Lahar hazard assessment in the southern drainage system of Cotopaxi volcano, Ecuador: Results from multiscale lahar simulations

NASA Astrophysics Data System (ADS)

Pistolesi, Marco; Cioni, Raffaello; Rosi, Mauro; Aguilera, Eduardo

2014-02-01

The ice-capped Cotopaxi volcano is known worldwide for the large-scale, catastrophic lahars that have occurred in connection with historical explosive eruptions. The most recent large-scale lahar event occurred in 1877 when scoria flows partially melted ice and snow of the summit glacier, generating debris flows that severely impacted all the river valleys originating from the volcano. The 1877 lahars have been considered in the recent years as a maximum expected event to define the hazard associated to lahar generation at Cotopaxi. Conversely, recent field-based studies have shown that such debris flows have occurred several times during the last 800 years of activity at Cotopaxi, and that the scale of lahars has been variable, including events much larger than that of 1877. Despite a rapid retreat of the summit ice cap over the past century, in fact, there are no data clearly suggesting that future events will be smaller than those observed in the deposits of the last 800 years of activity. In addition, geological field data prove that the lahar triggering mechanism also has to be considered as a key input parameter and, under appropriate eruptive mechanisms, a hazard scenario of a lahar with a volume 3-times larger than the 1877 event is likely. In order to analyze the impact scenarios in the southern drainage system of the volcano, simulations of inundation areas were performed with a semi-empirical model (LAHARZ), using input parameters including variable water volume. Results indicate that a lahar 3-times larger than the 1877 event would invade much wider areas than those flooded by the 1877 lahars along the southern valley system, eventually impacting highly-urbanized areas such as the city of Latacunga.

The Mount Rainier Lahar Detection System

NASA Astrophysics Data System (ADS)

Lockhart, A. B.; Murray, T. L.

2003-12-01

To mitigate the risk of unheralded lahars from Mount Rainier, the U.S. Geological Survey, in cooperation with Pierce County, Washington, installed a lahar-detection system on the Puyallup and Carbon rivers that originate on Mount Rainier's western slopes. The system, installed in 1998, is designed to automatically detect the passage of lahars large enough to potentially affect populated areas downstream (approximate volume threshold 40 million cubic meters), while ignoring small lahars, earthquakes, extreme weather and floods. Along each river valley upstream, arrays of independent lahar-monitoring stations equipped with geophones and short tripwires telemeter data to a pair of redundant computer base stations located in and near Tacoma at existing public safety facilities that are staffed around the clock. Monitored data consist of ground-vibration levels, tripwire status, and transmissions at regular intervals. The base stations automatically evaluate these data to determine if a dangerous lahar is passing through the station array. The detection algorithm requires significant ground vibration to occur at those stations in the array that are above the anticipated level of inundation, while lower level `deadman' stations, inundated by the flow, experience tripwire breakage or are destroyed. Once a base station detects a lahar, it alerts staff who execute a call-down of public-safety officials and schools, initiating evacuation of areas potentially at risk. Because the system's risk-mitigation task imposes high standards of reliability on all components, it has been under test for several years. To date, the system has operated reliably and without false alarms, including during the nearby M6.8 Nisqually Earthquake on February 28, 2001. The system is being turned over to Pierce County, and activated as part of their lahar warning system.

Water, ice and mud: Lahars and lahar hazards at ice- and snow-clad volcanoes

USGS Publications Warehouse

Waythomas, Christopher F.

2014-01-01

Large-volume lahars are significant hazards at ice and snow covered volcanoes. Hot eruptive products produced during explosive eruptions can generate a substantial volume of melt water that quickly evolves into highly mobile flows of ice, sediment and water. At present it is difficult to predict the size of lahars that can form at ice and snow covered volcanoes due to their complex flow character and behaviour. However, advances in experiments and numerical approaches are producing new conceptual models and new methods for hazard assessment. Eruption triggered lahars that are ice-dominated leave behind thin, almost unrecognizable sedimentary deposits, making them likely to be under-represented in the geological record.

Modeling the October 2005 lahars at Panabaj (Guatemala)

NASA Astrophysics Data System (ADS)

Charbonnier, S. J.; Connor, C. B.; Connor, L. J.; Sheridan, M. F.; Oliva Hernández, J. P.; Richardson, J. A.

2018-01-01

An extreme rainfall event in October of 2005 triggered two deadly lahars on the flanks of Tolimán volcano (Guatemala) that caused many fatalities in the village of Panabaj. We mapped the deposits of these lahars, then developed computer simulations of the lahars using the geologic data and compared simulated area inundated by the flows to mapped area inundated. Computer simulation of the two lahars was dramatically improved after calibration with geological data. Specifically, detailed field measurements of flow inundation area, flow thickness, flow direction, and velocity estimates, collected after lahar emplacement, were used to calibrate the rheological input parameters for the models, including deposit volume, yield strength, sediment and water concentrations, and Manning roughness coefficients. Simulations of the two lahars, with volumes of 240,200 ± 55,400 and 126,000 ± 29,000 m3, using the FLO-2D computer program produced models of lahar runout within 3% of measured runouts and produced reasonable estimates of flow thickness and velocity along the lengths of the simulated flows. We compare areas inundated using the Jaccard fit, model sensitivity, and model precision metrics, all related to Bayes' theorem. These metrics show that false negatives (areas inundated by the observed lahar where not simulated) and false positives (areas not inundated by the observed lahar where inundation was simulated) are reduced using a model calibrated by rheology. The metrics offer a procedure for tuning model performance that will enhance model accuracy and make numerical models a more robust tool for natural hazard reduction.

Examining the impact of lahars on buildings using numerical modelling

NASA Astrophysics Data System (ADS)

Mead, Stuart R.; Magill, Christina; Lemiale, Vincent; Thouret, Jean-Claude; Prakash, Mahesh

2017-05-01

Lahars are volcanic flows containing a mixture of fluid and sediment which have the potential to cause significant damage to buildings, critical infrastructure and human life. The extent of this damage is controlled by properties of the lahar, location of elements at risk and susceptibility of these elements to the lahar. Here we focus on understanding lahar-induced building damage. Quantification of building damage can be difficult due to the complexity of lahar behaviour (hazard), varying number and type of buildings exposed to the lahar (exposure) and the uncertain susceptibility of buildings to lahar impacts (vulnerability). In this paper, we quantify and examine the importance of lahar hazard, exposure and vulnerability in determining building damage with reference to a case study in the city of Arequipa, Peru. Numerical modelling is used to investigate lahar properties that are important in determining the inundation area and forces applied to buildings. Building vulnerability is quantified through the development of critical depth-pressure curves based on the ultimate bending moment of masonry structures. In the case study area, results suggest that building strength plays a minor role in determining overall building losses in comparison to the effects of building exposure and hydraulic characteristics of the lahar.

Full-wave Ambient Noise Tomography of Mt Rainier volcano, USA

NASA Astrophysics Data System (ADS)

Flinders, Ashton; Shen, Yang

2015-04-01

Mount Rainier towers over the landscape of western Washington (USA), ranking with Fuji-yama in Japan, Mt Pinatubo in the Philippines, and Mt Vesuvius in Italy, as one of the great stratovolcanoes of the world. Notwithstanding its picturesque stature, Mt Rainier is potentially the most devastating stratovolcano in North America, with more than 3.5 million people living beneath is shadow in the Seattle-Tacoma area. The primary hazard posed by the volcano is in the form of highly destructive debris flows (lahars). These lahars form when water and/or melted ice erode away and entrain preexisting volcanic sediment. At Mt Rainier these flows are often initiated by sector collapse of the volcano's hydrothermally rotten flanks and compounded by Mt Rainier's extensive snow and glacial ice coverage. It is therefore imperative to ascertain the extent of the volcano's summit hydrothermal alteration, and determine areas prone to collapse. Despite being one of the sixteen volcanoes globally designated by the International Association of Volcanology and Chemistry of the Earth's Interior as warranting detailed and focused study, Mt Rainier remains enigmatic both in terms of the shallow internal structure and the degree of summit hydrothermal alteration. We image this shallow internal structure and areas of possible summit alteration using ambient noise tomography. Our full waveform forward modeling includes high-resolution topography allowing us to accuratly account for the effects of topography on the propagation of short-period Rayleigh waves. Empirical Green's functions were extracted from 80 stations within 200 km of Mt Rainier, and compared with synthetic greens functions over multiple frequency bands from 2-28 seconds.

Community Exposure to Lahar Hazards from Mount Rainier, Washington

USGS Publications Warehouse

Wood, Nathan J.; Soulard, Christopher E.

2009-01-01

Geologic evidence of past events and inundation modeling of potential events suggest that lahars associated with Mount Rainier, Washington, are significant threats to downstream development. To mitigate potential impacts of future lahars and educate at-risk populations, officials need to understand how communities are vulnerable to these fast-moving debris flows and which individuals and communities may need assistance in preparing for and responding to an event. To support local risk-reduction planning for future Mount Rainier lahars, this study documents the variations among communities in King, Lewis, Pierce, and Thurston Counties in the amount and types of developed land, human populations, economic assets, and critical facilities in a lahar-hazard zone. The lahar-hazard zone in this study is based on the behavior of the Electron Mudflow, a lahar that traveled along the Puyallup River approximately 500 years ago and was due to a slope failure on the west flank of Mount Rainier. This lahar-hazard zone contains 78,049 residents, of which 11 percent are more than 65 years in age, 21 percent do not live in cities or unincorporated towns, and 39 percent of the households are renter occupied. The lahar-hazard zone contains 59,678 employees (4 percent of the four-county labor force) at 3,890 businesses that generate $16 billion in annual sales (4 and 7 percent, respectively, of totals in the four-county area) and tax parcels with a combined total value of $8.8 billion (2 percent of the study-area total). Employees in the lahar-hazard zone are primarily in businesses related to manufacturing, retail trade, transportation and warehousing, wholesale trade, and construction. Key road and rail corridors for the region are in the lahar-hazard zone, which could result in significant indirect economic losses for businesses that rely on these networks, such as the Port of Tacoma. Although occupancy values are not known for each site, the lahar-hazard zone contains numerous

Pyroclastic density current dynamics and associated hazards at ice-covered volcanoes

NASA Astrophysics Data System (ADS)

Dufek, J.; Cowlyn, J.; Kennedy, B.; McAdams, J.

2015-12-01

Understanding the processes by which pyroclastic density currents (PDCs) are emplaced is crucial for volcanic hazard prediction and assessment. Snow and ice can facilitate PDC generation by lowering the coefficient of friction and by causing secondary hydrovolcanic explosions, promoting remobilisation of proximally deposited material. Where PDCs travel over snow or ice, the reduction in surface roughness and addition of steam and meltwater signficantly changes the flow dynamics, affecting PDC velocities and runout distances. Additionally, meltwater generated during transit and after the flow has come to rest presents an immediate secondary lahar hazard that can impact areas many tens of kilometers beyond the intial PDC. This, together with the fact that deposits emplaced on ice are rarely preserved means that PDCs over ice have been little studied despite the prevalence of summit ice at many tall stratovolcanoes. At Ruapehu volcano in the North Island of New Zealand, a monolithologic welded PDC deposit with unusually rounded clasts provides textural evidence for having been transported over glacial ice. Here, we present the results of high-resolution multiphase numerical PDC modeling coupled with experimentaly determined rates of water and steam production for the Ruapehu deposits in order to assess the effect of ice on the Ruapehu PDC. The results suggest that the presence of ice significantly modified the PDC dynamics, with implications for assessing the PDC and associated lahar hazards at Ruapehu and other glaciated volcanoes worldwide.

Mechanism of sand slide - cold lahar induced by extreme rainfall

NASA Astrophysics Data System (ADS)

Fukuoka, Hiroshi; Yamada, Masumi; Dok, Atitkagna

2014-05-01

reveal the mechanism of rapid motion. In the undrained or partially drained tests under pore water pressure test, monotonic loading of shear stress, and constant shear speed conditions, we found that immediately after failure takes place, a big excess pore pressure was generated and accelerating motions had stated in all cases. The reduced shear resistance thereafter was maintained because of the lasting high pore pressure. Even in the partially-drained test, we found once the pore pressure reached almost same with the normal stress and then gradually decreased due to dissipation. Those tests apparently shows that the high mobility and high acceleration of the motion are expected and this could be the key mechanism of the fluidization of initial shallow slides into sand flows, i.e., cold lahars. In the past ring shear test series on volcanic materials from fluidized landslides at El Picaccho of El Salvador, Mt Aso of Kumamto Prefecture, and Nagari Tandikat near Padang, Indonesia, show very similar trends. In all those cases, we expected serious grain crushing during shear, contributed to the generation of excess pore pressure, because those material are deposited recently (in geological time) and suffered no big overburden pressure which means no consolidation and no serious grain crushing ever before. So those volcanic materials are generally susceptible to crushing and expect high mobility when slides are initiated under fully saturated condition.

Earth Observation taken during the Expedition 37 mission

NASA Image and Video Library

2013-09-30

ISS037-E-005089 (30 Sept. 2013) --- Ruapehu volcano and Tongariro volcanic complex in New Zealand are featured in this image photographed by an Expedition 37 crew member on the International Space Station. Mount Ruapehu is one of several volcanic centers on the North Island of New Zealand, but is the largest and historically most active. The 2,797-meter elevation volcano is also the highest mountain on North Island and is covered with snow on its upper slopes. Scientists believe while there are three summit craters that have been active during the last 10,000 years, South Crater is the only historically active one. This vent is currently filled with a lake (Crater Lake), visible at left; eruptions from the vent, mixed with water from the lake can lead to the formation of lahars – destructive gravity flows of mixed fluid and volcanic debris that form a hazard to ski areas on the upper slopes and lower river valleys. The most recent significant eruption of Ruapehu took place in 2007 and formed both an eruption plume and lahars. The volcano is surrounded by a 100-cubic-kilometer ring plain of volcaniclastic debris that appears dark grey in the image, whereas vegetated areas appear light to dark green. Located to the northeast of the Ruapehu volcanic structure, the Tongariro volcanic complex (lower right) is currently in an active eruptive phase – the previous eruptive phase ended in 1897. Explosive eruptions occurred in 2012, which have been followed by steam and gas plumes observed almost daily. According to scientists, the volcanic complex contains multiple cones constructed over the past 275,000 years. The most prominent of these, Mount Ngauruhoe, last erupted in 1975. Like Ruapehu, the upper slopes of both Ngauruhoe and the upper peaks of Tongariro are snow-covered. Scattered cloud cover is also visible near Tongariro at lower right.

Lahars of Mount Pinatubo, Philippines

USGS Publications Warehouse

Newhall, Christopher G.; Stauffer, Peter H.; Hendley, James W.

1997-01-01

On June 15, 1991, Mount Pinatubo in the Philippines exploded in the second largest volcanic eruption on Earth this century. This eruption deposited more than 1 cubic mile (5 cubic kilometers) of volcanic ash and rock fragments on the volcano's slopes. Within hours, heavy rains began to wash this material down into the surrounding lowlands in giant, fast-moving mudflows called lahars. In the next four rainy seasons, lahars carried about half of the deposits off the volcano, causing even more destruction in the lowlands than the eruption itself.

Dendrogeomorphic reconstruction of lahar activity and triggers: Shiveluch volcano, Kamchatka Peninsula, Russia

NASA Astrophysics Data System (ADS)

Salaorni, E.; Stoffel, M.; Tutubalina, O.; Chernomorets, S.; Seynova, I.; Sorg, A.

2017-01-01

Lahars are highly concentrated, water-saturated volcanic hyperconcentrated flows or debris flows containing pyroclastic material and are a characteristic mass movement process on volcanic slopes. On Kamchatka Peninsula (Russian Federation), lahars are widespread and may affect remote settlements. Historical records of past lahar occurrences are generally sparse and mostly limited to events which damaged infrastructure on the slopes or at the foot of volcanoes. In this study, we present a tree-ring-based reconstruction of spatiotemporal patterns of past lahar activity at Shiveluch volcano. Using increment cores and cross sections from 126 Larix cajanderi trees, we document 34 events covering the period AD 1729-2012. Analyses of the seasonality of damage in trees reveal that 95% of all lahars occurred between October and May and thus point to the predominant role of the sudden melt of the snow cover by volcanic material. These observations suggest that most lahars were likely syn-eruptive and that lahar activity is largely restricted to periods of volcanic activity. By contrast, rainfall events do not seem to play a significant role in lahar triggering.

Environmental hazards of fluoride in volcanic ash: a case study from Ruapehu volcano, New Zealand

NASA Astrophysics Data System (ADS)

Cronin, Shane J.; Neall, V. E.; Lecointre, J. A.; Hedley, M. J.; Loganathan, P.

2003-03-01

The vent-hosted hydrothermal system of Ruapehu volcano is normally covered by a c. 10 million m 3 acidic crater lake where volcanic gases accumulate. Through analysis of eruption observations, granulometry, mineralogy and chemistry of volcanic ash from the 1995-1996 Ruapehu eruptions we report on the varying influences on environmental hazards associated with the deposits. All measured parameters are more dependent on the eruptive style than on distance from the vent. Early phreatic and phreatomagmatic eruption phases from crater lakes similar to that on Ruapehu are likely to contain the greatest concentrations of environmentally significant elements, especially sulphur and fluoride. These elements are contained within altered xenolithic material extracted from the hydrothermal system by steam explosions, as well as in residue hydrothermal fluids adsorbed on to particle surfaces. In particular, total F in the ash may be enriched by a factor of 6 relative to original magmatic contents, although immediately soluble F does not show such dramatic increases. Highly soluble NaF and CaSiF 6 phases, demonstrated to be the carriers of 'available' F in purely magmatic eruptive systems, are probably not dominant in the products of phreatomagmatic eruptions through hydrothermal systems. Instead, slowly soluble compounds such as CaF 2, AlF 3 and Ca 5(PO 4) 3F dominate. Fluoride in these phases is released over longer periods, where only one third is leached in a single 24-h water extraction. This implies that estimation of soluble F in such ashes based on a single leach leads to underestimation of the F impact, especially of a potential longer-term environmental hazard. In addition, a large proportion of the total F in the ash is apparently soluble in the digestive system of grazing animals. In the Ruapehu case this led to several thousand sheep deaths from fluorosis.

Real-time prediction of rain-triggered lahars: incorporating seasonality and catchment recovery

NASA Astrophysics Data System (ADS)

Jones, Robbie; Manville, Vern; Peakall, Jeff; Froude, Melanie J.; Odbert, Henry M.

2017-12-01

Rain-triggered lahars are a significant secondary hydrological and geomorphic hazard at volcanoes where unconsolidated pyroclastic material produced by explosive eruptions is exposed to intense rainfall, often occurring for years to decades after the initial eruptive activity. Previous studies have shown that secondary lahar initiation is a function of rainfall parameters, source material characteristics and time since eruptive activity. In this study, probabilistic rain-triggered lahar forecasting models are developed using the lahar occurrence and rainfall record of the Belham River valley at the Soufrière Hills volcano (SHV), Montserrat, collected between April 2010 and April 2012. In addition to the use of peak rainfall intensity (PRI) as a base forecasting parameter, considerations for the effects of rainfall seasonality and catchment evolution upon the initiation of rain-triggered lahars and the predictability of lahar generation are also incorporated into these models. Lahar probability increases with peak 1 h rainfall intensity throughout the 2-year dataset and is higher under given rainfall conditions in year 1 than year 2. The probability of lahars is also enhanced during the wet season, when large-scale synoptic weather systems (including tropical cyclones) are more common and antecedent rainfall and thus levels of deposit saturation are typically increased. The incorporation of antecedent conditions and catchment evolution into logistic-regression-based rain-triggered lahar probability estimation models is shown to enhance model performance and displays the potential for successful real-time prediction of lahars, even in areas featuring strongly seasonal climates and temporal catchment recovery.

Modeling lahar behavior and hazards

USGS Publications Warehouse

Manville, Vernon; Major, Jon J.; Fagents, Sarah A.

2013-01-01

Lahars are highly mobile mixtures of water and sediment of volcanic origin that are capable of traveling tens to > 100 km at speeds exceeding tens of km hr-1. Such flows are among the most serious ground-based hazards at many volcanoes because of their sudden onset, rapid advance rates, long runout distances, high energy, ability to transport large volumes of material, and tendency to flow along existing river channels where populations and infrastructure are commonly concentrated. They can grow in volume and peak discharge through erosion and incorporation of external sediment and/or water, inundate broad areas, and leave deposits many meters thick. Furthermore, lahars can recur for many years to decades after an initial volcanic eruption, as fresh pyroclastic material is eroded and redeposited during rainfall events, resulting in a spatially and temporally evolving hazard. Improving understanding of the behavior of these complex, gravitationally driven, multi-phase flows is key to mitigating the threat to communities at lahar-prone volcanoes. However, their complexity and evolving nature pose significant challenges to developing the models of flow behavior required for delineating their hazards and hazard zones.

Rain-triggered lahars following the 2010 eruption of Merapi volcano, Indonesia: A major risk

NASA Astrophysics Data System (ADS)

de Bélizal, Edouard; Lavigne, Franck; Hadmoko, Danang Sri; Degeai, Jean-Philippe; Dipayana, Gilang Aria; Mutaqin, Bachtiar Wahyu; Marfai, Muh Aris; Coquet, Marie; Mauff, Baptiste Le; Robin, Anne-Kyria; Vidal, Céline; Cholik, Noer; Aisyah, Nurnaning

2013-07-01

The 2010 VEI 4 eruption of Merapi volcano deposited roughly ten times the volume of pyroclastic materials of the 1994 and 2006 eruptions, and is recognized as one of the most intense eruption since 1872. However, as the eruptive phase is now over, another threat endangers local communities: rain-triggered lahars. Previous papers on lahars at Merapi presented lahar-related risk following small-scale dome-collapse PDCs. Thus the aim of this study is to provide new insights on lahar-related risk following a large scale VEI 4 eruption. The paper highlights the high number of events (240) during the 2010-2011 rainy season (October 2010-May 2011). The frequency of the 2010-2011 lahars is also the most important ever recorded at Merapi. Lahars occurred in almost all drainages located under the active cone, with runout distances exceeding 15 km. The geomorphic impacts of lahars on the distal slope of the volcano are then explained as they directly threaten houses and infrastructures: creation of large corridors, avulsions, riverbank erosion and riverbed downcutting are detailed through local scale examples. Related damage is also studied: 860 houses damaged, 14 sabo-dams and 21 bridges destroyed. Sedimentological characteristics of volcaniclastic sediments in lahar corridors are presented, with emphasis on the resource in building material that they represent for local communities. Risk studies should not forget that thousands of people are exposing themselves to lahar hazard when they quarry volcaniclastic sediment on lahar corridors. Finally, the efficient community-based crisis management is explained, and shows how local people organize themselves to manage the risk: 3 fatalities were reported, although lahars reached densely populated areas. To summarize, this study provides an update of lahar risk issues at Merapi, with emphasis on the distal slope of the volcano where lahars had not occurred for 40 years, and where lahar corridors were rapidly formed.

Eruption-induced modifications to volcanic seismicity at Ruapehu, New Zealand, and its implications for eruption forecasting

USGS Publications Warehouse

Bryan, C.J.; Sherburn, S.

2003-01-01

Broadband seismic data collected on Ruapehu volcano, New Zealand, in 1994 and 1998 show that the 1995-1996 eruptions of Ruapehu resulted in a significant change in the frequency content of tremor and volcanic earthquakes at the volcano. The pre-eruption volcanic seismicity was characterized by several independent dominant frequencies, with a 2 Hz spectral peak dominating the strongest tremor and volcanic earthquakes and higher frequencies forming the background signal. The post-eruption volcanic seismicity was dominated by a 0.8-1.4 Hz spectral peak not seen before the eruptions. The 2 Hz and higher frequency signals remained, but were subordinate to the 0.8-1.4 Hz energy. That the dominant frequencies of volcanic tremor and volcanic earthquakes were identical during the individual time periods prior to and following the 1995-1996 eruptions suggests that during each of these time periods the volcanic tremor and earthquakes were generated by the same source process. The overall change in the frequency content, which occurred during the 1995-1996 eruptions and remains as of the time of the writing of this paper, most likely resulted from changes in the volcanic plumbing system and has significant implications for forecasting and real-time assessment of future eruptive activity at Ruapehu.

Sensitivity to lunar cycles prior to the 2007 eruption of Ruapehu volcano.

PubMed

Girona, Társilo; Huber, Christian; Caudron, Corentin

2018-01-24

A long-standing question in Earth Science is the extent to which seismic and volcanic activity can be regulated by tidal stresses, a repeatable and predictable external excitation induced by the Moon-Sun gravitational force. Fortnightly tides, a ~14-day amplitude modulation of the daily tidal stresses that is associated to lunar cycles, have been suggested to affect volcano dynamics. However, previous studies found contradictory results and remain mostly inconclusive. Here we study how fortnightly tides have affected Ruapehu volcano (New Zealand) from 2004 to 2016 by analysing the rolling correlation between lunar cycles and seismic amplitude recorded close to the crater. The long-term (~1-year) correlation is found to increase significantly (up to confidence level of 5-sigma) during the ~3 months preceding the 2007 phreatic eruption of Ruapehu, thus revealing that the volcano is sensitive to fortnightly tides when it is prone to explode. We show through a mechanistic model that the real-time monitoring of seismic sensitivity to lunar cycles may help to detect the clogging of active volcanic vents, and thus to better forecast phreatic volcanic eruptions.

Reducing risk from lahar hazards: concepts, case studies, and roles for scientists

USGS Publications Warehouse

Pierson, Thomas C.; Wood, Nathan J.; Driedger, Carolyn L.

2014-01-01

Lahars are rapid flows of mud-rock slurries that can occur without warning and catastrophically impact areas more than 100 km downstream of source volcanoes. Strategies to mitigate the potential for damage or loss from lahars fall into four basic categories: (1) avoidance of lahar hazards through land-use planning; (2) modification of lahar hazards through engineered protection structures; (3) lahar warning systems to enable evacuations; and (4) effective response to and recovery from lahars when they do occur. Successful application of any of these strategies requires an accurate understanding and assessment of the hazard, an understanding of the applicability and limitations of the strategy, and thorough planning. The human and institutional components leading to successful application can be even more important: engagement of all stakeholders in hazard education and risk-reduction planning; good communication of hazard and risk information among scientists, emergency managers, elected officials, and the at-risk public during crisis and non-crisis periods; sustained response training; and adequate funding for risk-reduction efforts. This paper reviews a number of methods for lahar-hazard risk reduction, examines the limitations and tradeoffs, and provides real-world examples of their application in the U.S. Pacific Northwest and in other volcanic regions of the world. An overriding theme is that lahar-hazard risk reduction cannot be effectively accomplished without the active, impartial involvement of volcano scientists, who are willing to assume educational, interpretive, and advisory roles to work in partnership with elected officials, emergency managers, and vulnerable communities.

Rapid Loss of Andean Alpine Glaciers: A Reflection on Cotopaxi´s Long-Distance Historical Lahars and Future Lahar Scenarios

NASA Astrophysics Data System (ADS)

Mothes, P. A.; Hall, M. L.; Samaniego, P.; Francou, B.; Castro, M.; Hidalgo, X.

2007-05-01

Andean alpine glaciers are in rapid retreat, as witnessed by actual measurements, comparative imagery and popular memory. Overall glacier losses will diminish future water availability for human consumption as well as for lahar generation, the product of mixing incandescent eruptive materials with glacial ice and snow. The field study and modeling of long-distance historical lahars from Cotopaxi volcano, Ecuador has shown them to be some of the most voluminous and longest reported. Based on back calculations, peak discharges were commonly between 45,000-60,000 m3/sec, velocities reached 70 km/hr, and run outs attained 325 km. The last "super" debris flow was produced at Cotopaxi in 1877. Observations made after the 1877 eruption reported that the glacier had suffered about 10 meters of ice stripped off the top and the incision of deep gullies from melting and erosion by the scoria block-rich pyroclastic flows. Average reductions of 45% and 60%, respectively, of the area and volume of Cotopaxi´s 19 alpine glaciers during the last 30 years have left an ice cap of only 13 km2 and a volume of 0.60 km3. Descriptions by astute 18th and 19th century observers lead us to conclude that Cotopaxi glaciers were much more robust then, surpassing a total area of about 30 km2, a fact which contributed to generating large volume lahars and high discharges, during the waning "Little Ice Age". If an eruption similar to that of 1877 occurs at Cotopaxi in the future, reduced glacier sizes and the glaciers´ preferential distribution upon the cone will likely attenuate volcano-ice interactions and will lower the probability of "super" lahars being produced during eruptive periods. However, in the last 2000 years of eruptive activity, explosive eruptions display a large size span-- from weakly explosive events (VEI= 2) to highly explosive eruptive cycles (VEI= 4-5). Given the uncertainty of the size of the next explosive eruption of Cotopaxi, several scenarios for lahar generation must

Satellite remote sensing as a tool in Lahar disaster management.

PubMed

Kerle, Norman; Oppenheimer, Clive

2002-06-01

At least 40,000 deaths have been attributed to historic lahars (volcanic mudflows). The most recent lahar disaster occurred in 1998 at Casita volcano, Nicaragua, claiming over 2,500 lives. Lahars can cover large areas and be highly destructive, and constitute a challenge for disaster management. With infrastructure affected and access frequently impeded, disaster management can benefit from the synoptic coverage provided by satellite imagery. This potential has been recognisedfor other types of natural disasters, but limitations are also known. Dedicated satellite constellations for disaster response and management have been proposed as one solution. Here we investigate the utility of currently available and forthcoming optical and radar sensors as tools in lahar disaster management. Applied to the Casita case, we find that imagery available at the time could not have significantly improved disaster response. However, forthcoming satellites, especially radar, will improve the situation, reducing the benefit of dedicated constellations.

Lahar infrasound associated with Volcán Villarrica's 3 March 2015 eruption

NASA Astrophysics Data System (ADS)

Johnson, Jeffrey B.; Palma, Jose L.

2015-08-01

The paroxysmal 2015 eruption of Volcán Villarrica (Chile) produced a 2.5 h long lahar, which descended more than 20 km within the Rio Correntoso/Turbio drainage and destroyed two small bridges. A three-element infrasound array 10 km from the summit, and 4 km from the lahar's closest approach, was used to study the flow's progression. Array processing using cross-correlation lag times and semblance places constraints on the lahar's dynamics, including detection of an initial flow pulse that traveled from 2 to 12 km at an average speed of 38 m/s. Subsequently, the lahar signal evolved to a relatively stationary infrasonic tremor located 10 to 12 km from the vent and adjacent to a topographic notch, through which sound may have preferentially diffracted toward the recording site. This study demonstrates the powerful capabilities of infrasound arrays for lahar study and suggests their potential application for future hazard monitoring.

Loss Estimation Modeling Of Scenario Lahars From Mount Rainier, Washington State, Using HAZUS-MH

NASA Astrophysics Data System (ADS)

Walsh, T. J.; Cakir, R.

2011-12-01

We have adapted lahar hazard zones developed by Hoblitt and others (1998) and converted to digital data by Schilling and others (2008) into the appropriate format for HAZUS-MH, which is FEMA's loss estimation model. We assume that structures engulfed by cohesive lahars will suffer complete loss, and structures affected by post-lahar flooding will be appropriately modeled by the HAZUS-MH flood model. Another approach investigated is to estimate the momentum of lahars, calculate a lateral force, and apply the earthquake model, substituting the lahar lateral force for PGA. Our initial model used the HAZUS default data, which include estimates of building type and value from census data. This model estimated a loss of about 12 billion for a repeat lahar similar to the Electron Mudflow down the Puyallup River. Because HAZUS data are based on census tracts, this estimated damage includes everything in the census tract, even buildings outside of the lahar hazard zone. To correct this, we acquired assessors data from all of the affected counties and converted them into HAZUS format. We then clipped it to the boundaries of the lahar hazard zone to more precisely delineate those properties actually at risk in each scenario. This refined our initial loss estimate to about 6 billion with exclusion of building content values. We are also investigating rebuilding the lahar hazard zones applying Lahar-Z to a more accurate topographic grid derived from recent Lidar data acquired from the Puget Sound Lidar Consortium and Mount Rainier National Park. Final results of these models for the major drainages of Mount Rainier will be posted to the Washington Interactive Geologic Map (http://www.dnr.wa.gov/ResearchScience/Topics/GeosciencesData/Pages/geology_portal.aspx).

Variations in population exposure and sensitivity to lahar hazards from Mount Rainier, Washington

NASA Astrophysics Data System (ADS)

Wood, Nathan; Soulard, Christopher

2009-12-01

Although much has been done to understand, quantify, and delineate volcanic hazards, there are fewer efforts to assess societal vulnerability to these hazards, particularly demographic differences in exposed populations or spatial variations in exposure to regional hazards. To better understand population diversity in volcanic hazard zones, we assess the number and types of people in a single type of hazard zone (lahars) for 27 communities downstream of Mount Rainier, Washington (USA). Using various socioeconomic and hazard datasets, we estimate that there are more than 78 000 residents, 59 000 employees, several dependent-population facilities (e.g., child-day-care centers, nursing homes) and numerous public venues (e.g., churches, hotels, museums) in a Mount Rainier lahar-hazard zone. We find that communities vary in the primary category of individuals in lahar-prone areas—exposed populations are dominated by residents in some communities (e.g., Auburn), employees in others (e.g., Tacoma), and tourists likely outnumber both of these groups in yet other areas (e.g., unincorporated Lewis County). Population exposure to potential lahar inundation varies considerably—some communities (e.g., Auburn) have large numbers of people but low percentages of them in hazard zones, whereas others (e.g., Orting) have fewer people but they comprise the majority of a community. A composite lahar-exposure index is developed to help emergency managers understand spatial variations in community exposure to lahars and results suggest that Puyallup has the highest combination of high numbers and percentages of people and assets in lahar-prone areas. Risk education and preparedness needs will vary based on who is threatened by future lahars, such as residents, employees, tourists at a public venue, or special-needs populations at a dependent-care facility. Emergency managers must first understand the people whom they are trying to prepare before they can expect these people to take

Variations in population exposure and sensitivity to lahar hazards from Mount Rainier, Washington

USGS Publications Warehouse

Wood, N.; Soulard, C.

2009-01-01

Although much has been done to understand, quantify, and delineate volcanic hazards, there are fewer efforts to assess societal vulnerability to these hazards, particularly demographic differences in exposed populations or spatial variations in exposure to regional hazards. To better understand population diversity in volcanic hazard zones, we assess the number and types of people in a single type of hazard zone (lahars) for 27 communities downstream of Mount Rainier, Washington (USA). Using various socioeconomic and hazard datasets, we estimate that there are more than 78 000 residents, 59 000 employees, several dependent-population facilities (e.g., child-day-care centers, nursing homes) and numerous public venues (e.g., churches, hotels, museums) in a Mount Rainier lahar-hazard zone. We find that communities vary in the primary category of individuals in lahar-prone areas-exposed populations are dominated by residents in some communities (e.g., Auburn), employees in others (e.g., Tacoma), and tourists likely outnumber both of these groups in yet other areas (e.g., unincorporated Lewis County). Population exposure to potential lahar inundation varies considerably-some communities (e.g., Auburn) have large numbers of people but low percentages of them in hazard zones, whereas others (e.g., Orting) have fewer people but they comprise the majority of a community. A composite lahar-exposure index is developed to help emergency managers understand spatial variations in community exposure to lahars and results suggest that Puyallup has the highest combination of high numbers and percentages of people and assets in lahar-prone areas. Risk education and preparedness needs will vary based on who is threatened by future lahars, such as residents, employees, tourists at a public venue, or special-needs populations at a dependent-care facility. Emergency managers must first understand the people whom they are trying to prepare before they can expect these people to take

Variations in community exposure to lahar hazards from multiple volcanoes in Washington State (USA)

USGS Publications Warehouse

Diefenbach, Angela K.; Wood, Nathan J.; Ewert, John W.

2015-01-01

Understanding how communities are vulnerable to lahar hazards provides critical input for effective design and implementation of volcano hazard preparedness and mitigation strategies. Past vulnerability assessments have focused largely on hazards posed by a single volcano, even though communities and officials in many parts of the world must plan for and contend with hazards associated with multiple volcanoes. To better understand community vulnerability in regions with multiple volcanic threats, we characterize and compare variations in community exposure to lahar hazards associated with five active volcanoes in Washington State, USA—Mount Baker, Glacier Peak, Mount Rainier, Mount Adams and Mount St. Helens—each having the potential to generate catastrophic lahars that could strike communities tens of kilometers downstream. We use geospatial datasets that represent various population indicators (e.g., land cover, residents, employees, tourists) along with mapped lahar-hazard boundaries at each volcano to determine the distributions of populations within communities that occupy lahar-prone areas. We estimate that Washington lahar-hazard zones collectively contain 191,555 residents, 108,719 employees, 433 public venues that attract visitors, and 354 dependent-care facilities that house individuals that will need assistance to evacuate. We find that population exposure varies considerably across the State both in type (e.g., residential, tourist, employee) and distribution of people (e.g., urban to rural). We develop composite lahar-exposure indices to identify communities most at-risk and communities throughout the State who share common issues of vulnerability to lahar-hazards. We find that although lahars are a regional hazard that will impact communities in different ways there are commonalities in community exposure across multiple volcanoes. Results will aid emergency managers, local officials, and the public in educating at-risk populations and developing

Catastrophic precipitation-triggered lahar at Casita volcano, Nicaragua: Occurrence, bulking and transformation

USGS Publications Warehouse

Scott, K.M.; Vallance, J.W.; Kerle, N.; Macias, J.L.; Strauch, W.; Devoli, G.

2005-01-01

A catastrophic lahar began on 30 October 1998, as hurricane precipitation triggered a small flank collapse of Casita volcano, a complex and probably dormant stratovolcano. The initial rockslide-debris avalanche evolved on the flank to yield a watery debris flood with a sediment concentration less than 60 per cent by volume at the base of the volcano. Within 2-5 km, however, the watery flow entrained (bulked) enough sediment to transform entirely to a debris flow. The debris flow, 6 km downstream and 1??2 km wide and 3 to 6 m deep, killed 2500 people, nearly the entire populations of the communities of El Porvenir and Rolando Rodriguez. These 'new towns' were developed in a prehistoric lahar pathway: at least three flows of similar size since 8330 14C years BP are documented by stratigraphy in the same 30-degree sector. Travel time between perception of the flow and destruction of the towns was only 2??5-3??0 minutes. The evolution of the flow wave occurred with hydraulic continuity and without pause or any extraordinary addition of water. The precipitation trigger of the Casita lahar emphasizes the nee d, in volcano hazard assessments, for including the potential for non-eruption-related collapse lahars with the more predictable potential of their syneruption analogues. The flow behaviour emphasizes that volcano collapses can yield not only volcanic debris avalanches with restricted runouts, but also mobile lahars that enlarge by bulking as they flow. Volumes and hence inundation areas of collapse-runout lahars can increase greatly beyond their sources: the volume of the Casita lahar bulked to at least 2??6 times the contributing volume of the flank collapse and 4??2 times that of the debris flood. At least 78 per cent of the debris flow matrix (sediment < -1??0??; 2 mm) was entrained during flow. Copyright c 2004 John Wiley & Sons, Ltd.

Lahars at Cotopaxi and Tungurahua Volcanoes, Ecuador: Highlights from stratigraphy and observational records and related downstream hazards: Chapter 6

USGS Publications Warehouse

Mothes, Patricia A; Vallance, James W.

2015-01-01

Lahars are volcanic debris flows that are dubbed primary when triggered by eruptive activity or secondary when triggered by other factors such as heavy rainfall after eruptive activity has waned. Variation in time and space of the proportion of sediment to water within a lahar dictates lahar flow phase and the resultant sedimentary character of deposits. Characteristics of source material and of debris eroded and incorporated during flow downstream may strongly affect the grain-size composition of flowing lahars and their deposits. Lahars borne on the flanks of two steep-sided stratocones in Ecuador exemplify two important lahar types. Glacier-clad Cotopaxi volcano has been a producer of primary lahars that flow great distances downstream. Such primary lahars include those of both clast-rich and matrix-rich composition—some of which have flowed as far as 325 km to the Pacific Ocean. Cotopaxi's last important eruption in 1877 generated formidable syneruptive lahars comparable in size to those that buried Armero, Colombia, following the 1985 eruption of Nevado del Ruiz volcano. In contrast, ash-producing eruptive activity during the past 15 years at Tungurahua volcano has generated a continual supply of fresh volcaniclastic debris that is regularly remobilized by precipitation. Between 2000 and 2011, 886 rain-generated lahars were registered at Tungurahua. These two volcanoes pose dramatically different hazards to nearby populations. At Tungurahua, the frequency and small sizes of lahars have resulted in effective mitigation measures. At Cotopaxi 137 years have passed since the last important lahar-producing eruption, and there is now a high-risk situation for more than 100,000 people living in downstream valleys.

Developing building-damage scales for lahars: application to Merapi volcano, Indonesia

NASA Astrophysics Data System (ADS)

Jenkins, Susanna F.; Phillips, Jeremy C.; Price, Rebecca; Feloy, Kate; Baxter, Peter J.; Hadmoko, Danang Sri; de Bélizal, Edouard

2015-09-01

Lahar damage to buildings can include burial by sediment and/or failure of walls, infiltration into the building and subsequent damage to contents. The extent to which a building is damaged will be dictated by the dynamic characteristics of the lahar, i.e. the velocity, depth, sediment concentration and grain size, as well as the structural characteristics and setting of the building in question. The focus of this paper is on quantifying how buildings may respond to impact by lahar. We consider the potential for lahar damage to buildings on Merapi volcano, Indonesia, as a result of the voluminous deposits produced during the large (VEI 4) eruption in 2010. A building-damage scale has been developed that categorises likely lahar damage levels and, through theoretical calculations of expected building resistance to impact, approximate ranges of impact pressures. We found that most weak masonry buildings on Merapi would be destroyed by dilute lahars with relatively low velocities (ca. 3 m/s) and pressures (ca. 5 kPa); however, the majority of stronger rubble stone buildings may be expected to withstand higher velocities (to 6 m/s) and pressures (to 20 kPa). We applied this preliminary damage scale to a large lahar in the Putih River on 9 January 2011, which inundated and caused extensive building damage in the village of Gempol, 16 km southwest of Merapi. The scale was applied remotely through the use of public satellite images and through field studies to categorise damage and estimate impact pressures and velocities within the village. Results were compared with those calculated independently from Manning's calculations for flow velocity and depth within Gempol village using an estimate of flow velocity at one upstream site as input. The results of this calculation showed reasonable agreement with an average channel velocity derived from travel time observations. The calculated distribution of flow velocities across the area of damaged buildings was consistent with

Record of late holocene debris avalanches and lahars at Iliamna Volcano, Alaska

USGS Publications Warehouse

Waythomas, C.F.; Miller, T.P.; Beget, J.E.

2000-01-01

Iliamna Volcano is a 3053-meter high, glaciated stratovolcano in the southern Cook Inlet region of Alaska and is one of seven volcanoes in this region that have erupted multiple times during the past 10,000 yr. Prior to our studies of Iliamna Volcano, little was known about the frequency, magnitude, and character of Holocene volcanic activity. Here we present geologic evidence of the most recent eruptive activity of the volcano and provide the first outline of Late Holocene debris-avalanche and lahar formation. Iliamna has had no documented historical eruptions but our recent field investigations indicate that the volcano has erupted at least twice in the last 300 yr. Clay-rich lahar deposits dated by radiocarbon to ???1300 and ???90 yr BP are present in two major valleys that head on the volcano. These deposits indicate that at least two large, possibly deep-seated, flank failures of the volcanic edifice have occurred in the last 1300 yr. Noncohesive lahar deposits likely associated with explosive pyroclastic eruptions date to 2400-1300,>1500,???300, and <305 yr BP. Debris-avalanche deposits from recent and historical small-volume slope failures of the hydrothermally altered volcanic edifice cover most of the major glaciers on the volcano. Although these deposits consist almost entirely of hydrothermally altered rock debris and snow and ice, none of the recently generated debris avalanches evolved to lahars. A clay-rich lahar deposit that formed <90??60 radiocarbon yr BP and entered the Johnson River Valley southeast of the volcano cannot be confidently related to an eruption of Iliamna Volcano, which has had no known historical eruptions. This deposit may record an unheralded debris avalanche and lahar. ?? 2000 Elsevier Science B.V. All rights reserved.

Causes, Dynamics and Impacts of Lahar Mass Flows due to the April 2015 Eruption of Calbuco Volcano, Chile

NASA Astrophysics Data System (ADS)

Dussaillant, Alejandro; Russell, Andy; Meier, Claudio; Rivera, Andres; Mella, Mauricio; Garrido, Natalia; Hernandez, Jorge; Napoleoni, Felipe; Gonzalez, Cristian

2016-04-01

Calbuco is a 2015m high, glacier capped, stratovolcano in the heavily populated Los Lagos region of southern Chile with a history of large volcanic eruptions in 1893-95, 1906-7, 1911-12, 1917, 1932, 1945, 1961 and 1972. Calbuco volcano experienced a powerful 90 minute eruption at 18:04h on 22 April, 2015 followed by additional major eruptions at 01:00h and 13:10h on 23 & 30 April, respectively, resulting in the evacuation of 6500 people and the imposition of a 20 km radius exclusion zone. Pyroclastic flows descended into several river catchments radiating from the volcano with lahars travelling distances of up to 14 km, reaching populated areas. We present findings from detailed field observations from April and July 2015, and January 2016, regarding the causes, dynamics and impacts of lahars generated by the April 2015 eruption, supported by satellite imagery, LiDAR and detailed rtkGPS & TLS surveys, as well as sediment sampling. Pyroclastic flows melted glacier ice and snow generating the largest lahars in the Rio Este and Rio Blanco Sur on the southern flanks of the volcano. Lahar deposits in the Rio Blanco Norte were buried by pyroclastic flow deposits with measured temperatures of up to 282°C three months after emplacement. Lahar erosional impacts included bedrock erosion, alluvial channel incision, erosion of surficial deposits and the felling of large areas of forest. Depositional landforms included boulder run-ups on the outsides of channel bends, boulder clusters and large woody debris jams. Lahars deposited up to 8m of sediment within distal reaches. Deposits on the southern flanks of Calbuco indicate the passage of multiple pulses of contrasting rheology. Lahar occurrence and magnitude was controlled by the pre-eruption distribution of snow and ice on the volcano. Pre-existing lahar channels controlled flows to lower piedmont zones where routing was determined by palaeo-lahar geomorphology. Ongoing erosion of proximal pyroclastic flow and lahar deposits

Monitoring the Dynamic of a Fluvial Channel after Lahar Disturbance: Huiloac Gorge (Popocatepetl Volcano, Mexico)

NASA Astrophysics Data System (ADS)

Andres, N.; Palacios, D.; Zamorano, J. J.; Tanarro, L. M.; Renschler, C.; Sanjosé, J. J.; Atkinson, A.

2009-04-01

Capra, L.; Poblete, M.A. and Alvarado, R. 2004. The 1997 and 2001 lahars of Popocatépetl volcano (Central Mexico): textural and sedimentological constraints on their origin and hazards. Journal of Volcanology and Geothermal Research, 131: 351-369. Gran, K. y Montgomery, D., 2005. Spatial and temporal patterns in fluvial recovery following volcanic eruptions: Channel response to basin-wide sediment loading at Mount Pinatubo, Philippines. GSA Bulletin, 117; 1-2: 195-211. Hayes, S.K., Montgomery, D.R. and Newhall, C.G., 2002, Fluvial sediment transport and deposition following the 1991 eruption of Mt. Pinatubo. Geomorphology. Vol. 45: 211-224. Major, J.J., Pierson, T.C., Dinehart, R.L. y Costa, J.E. 2000. Sediment yield following severe volcanic disturbance- A two-decade perspective from Mount St. Helens. Geology, 28, n° 9: 819-822. Major, J.J., 2003. Post-eruption hydrology and sediment transport in volcanic river systems, Water Resources IMPACT, 5(3): 10-15. Muñoz, E. 2007. Los lahares del Popocatépetl: tratamiento de la información para la prevención de catástrofes. (PhD thesis, Universidad Complutense de Madrid.) Palacios, D., 1995. Rockslide processes on the north slope of Popocatépetl Volcano, Mexico, Permafrost and Periglaciar Processes, 6: 345-356. Palacios, D., J.J. Zamorano and G. Parrilla. 1998. Proglacial debris flows in Popocatépetl North Face and their relation to 1995 eruption. Z. Geomorph. N. P., 42(3), 273-295 Palacios, D., J.J. Zamorano and A. Gómez. 2001. The impact of present lahars on the geomorphologic evolution of proglacial gorges: Popocatépetl, Mexico. Geomorphology, 37(1-2), 15-42.

Geomorphological evolution of a fluvial channel after primary lahar deposition: Huiloac Gorge, Popocatépetl volcano (Mexico)

NASA Astrophysics Data System (ADS)

Tanarro, L. M.; Andrés, N.; Zamorano, J. J.; Palacios, D.; Renschler, C. S.

2010-10-01

Popocatépetl volcano (19°02' N, 98°62' W, 5424 m) began its most recent period of volcanic activity in December 1994. The interaction of volcanic and glacier activity triggered the formation of lahars through the Huiloac Gorge, located on the northern flank of the volcano, causing significant morphological changes in the channel. The most powerful lahars occurred in April 1995, July 1997 and January 2001, and were followed by secondary lahars that formed during the post-eruptive period. This study interprets the geomorphological evolution of the Huiloac Gorge after the January 2001 lahar. Variations in channel morphology at a 520 m-long research site located mid-way down the gorge were recorded over a 4 year period from February 2002 to March 2005, and depicted in five geomorphological maps (scale 1:200) for 14 February and 15 October 2002, 27 September 2003, 9 February 2004, and 16 March 2006. A GIS was used to calculate the surface area for the landforms identified for each map and detected changes and erosion-deposition processes of the landforms using the overlay function for different dates. Findings reveal that secondary lahars and others types of flows, like sediment-laden or muddy streamflows caused by precipitation, rapidly modified the gorge channel following the January 2001 non-eruptive lahar, a period associated with volcanic inactivity and the disappearance of the glacier once located at the headwall of the gorge. Field observations also confirmed that secondary flows altered the dynamics and geomorphological development of the channel. These flows incised and destroyed the formations generated by the primary lahars (1997 and 2001), causing a widening of the channel that continues today. After February 2004, a rain-triggered lahar and other flows infilled the channel with materials transported by these flows. The deposits on the lateral edges of the channel form terraces. A recent lull in lahar activity contrasts with the increasing instability of

Preliminary observations of voluminous ice-rich and water-rich lahars generated during the 2009 eruption of Redoubt, Alaska

USGS Publications Warehouse

Waythomas, Christopher F.; Pierson, Thomas C.; Major, Jon J.; Scott, William E.

2012-01-01

Redoubt Volcano in south-central Alaska began erupting on March 15, 2009, and by April 4, 2009, had produced at least 20 explosive events that generated plumes of ash and lahars. The 3,108-m high, snow- and -ice-clad stratovolcano has an ice-filled summit crater that is breached to the north. The volcano supports about 4 km3 of ice and snow and about 1 km3 of this makes up the Drift glacier on the northern side of the volcano. Explosive eruptions between March 22 and April 4, which included the destruction of at least two lava domes, triggered significant lahars in the Drift River valley on March 23 and April 4 and several smaller lahars between March 24 and March 31. High-flow marks, character of deposits, areas of inundation, and estimates of flow velocity revealed that the lahars on March 23 and April 4 were the largest of the eruption. In the 2-km-wide upper Drift River valley, average flow depths were about 3–5 m. Average peak-flow velocities were likely between 10 and 15 ms-1, and peak discharges were on the order of 104–105 m3s-1. The area inundated by lahars on March 23 was at least 100 km2 and on April 4 about 125 km2. The lahars emplaced on March 23 and April 4 had volumes on the order of 107–108 m3 and were similar in size to the largest lahar of the 1989–90 eruption. The March 23 lahars were primarily flowing slurries of snow and ice entrained from the Drift glacier and seasonal snow and tabular blocks of river ice from the Drift River valley. Only a single, undifferentiated deposit up to 5 m thick was found and contained about 80–95 percent of poorly sorted, massive to imbricate assemblages of snow and ice. The deposit was frozen soon after it was emplaced and later eroded and buried by the April 4 lahar. The lahar of April 4, in contrast, was primarily a hyperconcentrated flow, as interpreted from 1- to 6-m thick deposits of massive to horizontally stratified sand-to-fine-gravel. Rock material in the April 4 lahar deposit is predominantly

Topographic Change at Mt. Pinatubo, Philippines, from SRTM and TOPSAR Observations

NASA Astrophysics Data System (ADS)

Mouginis-Mark, P. J.; Garbeil, H.; Torres, R.

2001-12-01

Data from the Shuttle Radar Topographic Mission (SRTM) will permit extensive analysis of volcanoes and volcanic processes in many parts of the world that are infrequently studied by field volcanologists. In preparation for the release of the SRTM data, we have been studying Mt. Pinatubo volcano in the Philippines, using digital elevation data collected from the TOPSAR airborne interferometric radar. We report here on our results from these preparatory studies, and suggest how SRTM observations may enhance future work on Mt. Pinatubo and other volcanoes. The 1991 eruption of Mt. Pinatubo, Philippines, provides a unique opportunity to study the effects of a large eruption in part because it took place after the advent of satellite-based observations. Using five SPOT multispectral satellite images (obtained 4/88, 12/91, 12/94, 2/96 and 12/98), we have documented the drainage evolution on the "Western Fan", which is a large (>100 km2) ignimbrite deposit extending from O'Donnell Valley in the north to Marella Valley in the SW. Detailed knowledge of topography and slopes is important for documenting these changes, and are relevant for the study of the evolving "sediment budget" (near-summit sediments eroded during storms and deposited at lower elevations) which controls lahar production. These lahars can result in extensive damage downstream even years after the eruption. Our topographic studies have so far relied on the morphologic analysis of TOPSAR data of the western fan collected during the 1996 and 2000 PacRim deployments. Co-registering the TOPSAR and SPOT data enables the degree of erosion to be assessed over the 5 year 4 month period between the eruption and TOPSAR data collection. A maximum of >50 m of erosion has been identified in areas buried by the eruption. Numerous small (10 - 15 m deep) new canyons have also been measured. Because they were obtained in the same year as PacRim 2 data, the SRTM observations promise to provide the regional context for these

Stratigraphic and sedimetological study of relevant lahar deposits of La Lumbre ravine, Colima volcano (Mexico): preliminary results.

NASA Astrophysics Data System (ADS)

Sarocchi, D.; Rodriguez-Sedano, L. A.; Saucedo, R.; Capra, L.

2009-04-01

Volcán de Colima is the most active volcano of Mexico with more than fifty eruptions documented in the last four centuries. The great amount of pyroclastic material deposited in the volcano slopes represents a perfect source for an intense lahar activity. Despite the intense volcanic activity with production of explosive eruptions and pyroclastic flows, lahars are greatly the most dangerous phenomena at Volcán de Colima. Pyroclastic flows did not reach long distances, generally less than 5 km from the crater. In contrast, lahars travel long distances, up to 10 km, causing damage to infrastructure and being able to affect populated areas. For this reason in the last 100 years more than 350 people died for lahars in the Colima Volcanic Complex and only 8 lost their lives for pyroclastic flows in 1913 plinian eruption. "La Lumbre" ravine is a very important morphological feature in the western-southwestern sector of the volcano, there, it gathers the main drainage system and collects water from "El Playon", a wide intra-caldera basin delimited by the Volcán de Colima to the south and the "Paleofuego" caldera rim to the north. This ravine produced huge lahars such as the 1906 lahar which killed almost 325 people, or the lahars associated with the great 1913 eruption, other associated with de 1990-91 volcanic crisis, and is still very active, continuously remobilizing the 1998-99 pyroclastic flow deposits. In 2002 near the confluence between "La Lumbre" and "El Zarco" Ravine, a house was destroyed fortunately with no danger for people. In order to perform future accurate lahar numerical simulation and obtain reliable hazard study along this ravine, is very important to reconstruct the complex stratigraphy and understand which of such important deposits is related with the 1906, 1913 or 1991 eruptive crisis. For this reason we are performing a detailed stratigraphic study of the lahars sequence. We selected the best outcrops at different distances from the crater. In

Smoothed particle hydrodynamic modeling of volcanic debris flows: Application to Huiloac Gorge lahars (Popocatépetl volcano, Mexico)

NASA Astrophysics Data System (ADS)

Haddad, Bouchra; Palacios, David; Pastor, Manuel; Zamorano, José Juan

2016-09-01

Lahars are among the most catastrophic volcanic processes, and the ability to model them is central to mitigating their effects. Several lahars recently generated by the Popocatépetl volcano (Mexico) moved downstream through the Huiloac Gorge towards the village of Santiago Xalitzintla. The most dangerous was the 2001 lahar, in which the destructive power of the debris flow was maintained throughout the extent of the flow. Identifying the zone of hazard can be based either on numerical or empirical models, but a calibration and validation process is required to ensure hazard map quality. The Geoflow-SPH depth integrated numerical model used in this study to reproduce the 2001 lahar was derived from the velocity-pressure version of the Biot-Zienkiewicz model, and was discretized using the smoothed particle hydrodynamics (SPH) method. The results of the calibrated SPH model were validated by comparing the simulated deposit depth with the field depth measured at 16 cross sections distributed strategically along the gorge channel. Moreover, the dependency of the results on topographic mesh resolution, initial lahar mass shape and dimensions is also investigated. The results indicate that to accurately reproduce the 2001 lahar flow dynamics the channel topography needed to be discretized using a mesh having a minimum 5 m resolution, and an initial lahar mass shape that adopted the source area morphology. Field validation of the calibrated model showed that there was a satisfactory relationship between the simulated and field depths, the error being less than 20% for 11 of the 16 cross sections. This study demonstrates that the Geoflow-SPH model was able to accurately reproduce the lahar path and the extent of the flow, but also reproduced other parameters including flow velocity and deposit depth.

The drag forces exerted by lahar flows on a cylindrical pier: case study of post Mount Merapi eruptions

NASA Astrophysics Data System (ADS)

Faizien Haza, Zainul

2018-03-01

Debris flows of lahar flows occurred in post mount eruption is a phenomenon in which large quantities of water, mud, and gravel flow down a stream at a high velocity. It is a second stage of danger after the first danger of lava flows, pyroclastic, and toxic gases. The debris flow of lahar flows has a high density and also high velocity; therefore it has potential detrimental consequences against homes, bridges, and infrastructures, as well as loss of life along its pathway. The collision event between lahar flows and pier of a bridge is observed. The condition is numerically simulated using commercial software of computational fluid dynamic (CFD). The work is also conducted in order to investigate drag force generated during collision. Rheological data of lahar is observed through laboratory test of lahar model as density and viscosity. These data were used as the input data of the CFD simulation. The numerical model is involving two types of fluid: mud and water, therefore multiphase model is adopted in the current CFD simulation. The problem formulation is referring to the constitutive equations of mass and momentum conservation for incompressible and viscous fluid, which in perspective of two dimension (2D). The simulation models describe the situation of the collision event between lahar flows and pier of a bridge. It provides sequential view images of lahar flow impaction and the propagation trend line of the drag force coefficient values. Lahar flow analysis used non-dimensional parameter of Reynolds number. According to the results of numerical simulations, the drag force coefficients are in range 1.23 to 1.48 those are generated by value of flow velocity in range 11.11 m/s to 16.67 m/s.

Distinguishing between stress-induced and structural anisotropy at Mount Ruapehu volcano, New Zealand

USGS Publications Warehouse

Johnson, J. H.; Savage, M.K.; Townend, J.

2011-01-01

We have created a benchmark of spatial variations in shear wave anisotropy around Mount Ruapehu, New Zealand, against which to measure future temporal changes. Anisotropy in the crust is often assumed to be caused by stress-aligned microcracks, and the polarization of the fast quasi-shear wave (??) is thus interpreted to indicate the direction of maximum horizontal stress, but can also be due to aligned minerals or macroscopic fractures. Changes in seismic anisotropy have been observed following a major eruption in 1995/96 and were attributed to changes in stress from the depressurization of the magmatic system. Three-component broadband seismometers have been deployed to complement the permanent stations that surround Ruapehu, creating a combined network of 34 three-component seismometers. This denser observational network improves the resolution with which spatial variations in seismic anisotropy can be examined. Using an automated shear wave splitting analysis, we examine local earthquakes in 2008. We observe a strong azimuthal dependence of ?? and so introduce a spatial averaging technique and two-dimensional tomography of recorded delay times. The anisotropy can be divided into regions in which ?? agrees with stress estimations from focal mechanism inversions, suggesting stress-induced anisotropy, and those in which ?? is aligned with structural features such as faults, suggesting structural anisotropy. The pattern of anisotropy that is inferred to be stress related cannot be modeled adequately using Coulomb modeling with a dike-like inflation source. We suggest that the stress-induced anisotropy is affected by loading of the volcano and a lithospheric discontinuity. Copyright 2011 by the American Geophysical Union.

Simulating the Osceola Mudflow Lahar Event in the Pacific Northwest using a GPU Based 2-Dimensional Hydraulic Model

NASA Astrophysics Data System (ADS)

Katz, B. G.; Eppert, S.; Lohmann, D.; Li, S.; Goteti, G.; Kaheil, Y. H.

2011-12-01

At 4,400 meters, Mount Rainer has been the point of origin for several major lahar events. The largest event, termed the "Osceola Mudflow," occurred 5,500 years ago and covered an area of approximately 550km2 with a total volume of deposited material from 2 to 4km3. Particularly deadly, large lahars are estimated to have maximum flow velocities in of 100km/h with a density often described as "Flowing Concrete." While rare, these events typically cause total destruction within a lahar inundation zone. It is estimated that approximately 150,000 people live on top of previous deposits left by lahars which can be triggered by anything from earthquakes to glacial and chemical erosion of volcanic bedrock over time to liquefaction caused by extreme rainfall events. A novel methodology utilizing a 2 dimensional hydraulic model has been implemented allowing for high resolution (30m) lahar inundation maps to be generated. The utility of this model above or in addition to other methodologies such as that of Iverson (1998), lies in its portability to other lahar zones as well as its ability to model any total volume specified by the user. The process for generating lahar flood plains requires few inputs including: a Digital Terrain Map of any resolution (DTM), a mask defining the locations for lahar genesis, a raster of friction coefficients, and a time series depicting uniform material accumulation over the genesis mask which is allowed to flow down-slope. Finally, a significant improvement in speed has been made for solving the two dimensional model by utilizing the latest in graphics processing unit (GPU) technology which has resulted in a greater than 200 times speed up in model run time over previous CPU-based methods. The model runs for the Osceola Mudflow compare favorably with USGS derived inundation regions as derived using field measurements and GIS based approaches such as the LAHARZ program suit. Overall gradation of low to high risk match well, however the new

Groundwater drainage from fissures as a source for lahars

NASA Astrophysics Data System (ADS)

Johnson, P. J.; Valentine, G. A.; Stauffer, P. H.; Lowry, C. S.; Sonder, I.; Pulgarín, B. A.; Santacoloma, C. C.; Agudelo, A.

2018-04-01

One mechanism for generating lahars at volcanoes experiencing unrest is the disruption of internal aquifers. These disruptions can trigger releases of large quantities of groundwater. An example of such aquifer disruption occurred at Nevado del Huila Volcano, Colombia, during February and April 2007 when large fractures formed across the summit area of the volcano and lahars were emitted from them. Previous work interpreted that lahar volumes could not be accounted for by melted glacial snow or precipitation, and by elimination suggested that the primary water source was groundwater. Conceptual models have been developed for perched, confined aquifers that have been heated and pressurized by magma intrusions, followed by sudden pressure release and water emission during fracture formation. We consider an alternative end member wherein water release from large fissures at volcanoes is driven by simple gravity drainage. We apply numerical modeling to quantify water discharge from the porous medium surrounding a fissure with a low-elevation free exit. If a long fracture with high vertical extent (on the order of hundreds of meters) intersects a highly connected saturated porous medium, large volumes (on order 103 m3/m of crack length) of water may be released within tens of minutes. The drainage rates from the model may be adequate to account for the Nevado del Huila events if the medium surrounding the crack contains a large volume of water and has high horizontal permeability. This simple but poorly understood mechanism can present a hazard on its own or compound other processes releasing water from volcanoes.

Earth observations taken during STS-77 mission

NASA Image and Video Library

1996-05-28

STS077-715-037 (19-29 May 1996) --- According to NASA scientists, Ruapehu, on New Zealand?s North Island, is one of the most active volcanoes in the South Pacific. Prior to the flight, crew members scheduled this site as one of their photographic targets. The volcano endured a significant eruption in late September, 1995. This view is the first image of the crater region since that eruption. Since then, numerous landslides and secondary explosions in the summit area has produced changes. In this view, recent mudflows extend from the summit region and down the mountain flank which is in the shadow. Ruapehu is also one of New Zealand?s high points - the mountain supports a glacier and permanent ice fields, and volcanic activity necessarily involves mixing hot volcanic products with snow and ice. Recent activity has produced destructive lahars (mudslides which are slurries of volcanic material with ice and water) downslope. A hazard warning to skiers is still in effect.

Post Eruption Hazards at Mt. Pinatubo, Philippines

NASA Technical Reports Server (NTRS)

Mouginis-Mark, Peter J.

2004-01-01

Our project focused on the investigation of the post-eruption hazards at Mt. Pinatubo (Philippines) using remote sensing data, and field observations of the 1991 eruption deposits. Through the use of multiple satellite images, field work, and the 1996/2000 PacRim data sets, we conducted studies of the co- and post-eruption hazards of the volcano due to erosion and re-deposition of the extensive pyroclastic flow deposits. A major part of this project was the assembly and analysis of a database of over 50 high resolution (1 - 50 m/pixel) images that will facilitate this study. We collected Ikonos, SPOT, SIR-C/X-SAR, Landsat, ERS, RADARSAT, and ASTER images of the area around Mt. Pinatubo. An example of the changes that could be seen in these data is shown. Our investigation focused on a retrospective analysis of the erosion, redeposition, and re-vegetation of the 1991 pyroclastic flow deposits of Mt. Pinatubo. The primary geologic goal of our work was the analysis of the spatial distribution and volume change of the sources and sinks of materials associated with mudflow ('lahar') events. This included the measurement of river valley gradients and cross-sections using TOPSAR digital elevation data, as we are participating in the PacRim 2000 deployment to the Philippines specifically so that we can collect a second set of TOPSAR data that can then be used to create a topographic difference image of the volcano. The main results from this multi-sensor study have been published as Torres et al.. A discussion of the methodology that we used to assemble an appropriate database was included in Mouginis-Mark and Domergue-Schmidt. As part of an educational outreach effort, we also helped the Philippine Institute of Volcanology and Seismology (PHIVOLCS) in the Philippines to use NASA data to study Mt. Pinatubo and other Filipino volcanoes.

Groundwater drainage from fissures as a source for lahars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, P. J.; Valentine, G. A.; Stauffer, P. H.

One mechanism for generating lahars at volcanoes experiencing unrest is the disruption of internal aquifers. These disruptions can trigger releases of large quantities of groundwater. An example of such aquifer disruption occurred at Nevado del Huila Volcano, Colombia, during February and April 2007 when large fractures formed across the summit area of the volcano and lahars were emitted from them. Previous work interpreted that lahar volumes could not be accounted for by melted glacial snow or precipitation, and by elimination suggested that the primary water source was groundwater. Conceptual models have been developed for perched, confined aquifers that have beenmore » heated and pressurized by magma intrusions, followed by sudden pressure release and water emission during fracture formation. In this paper, we consider an alternative end member wherein water release from large fissures at volcanoes is driven by simple gravity drainage. We apply numerical modeling to quantify water discharge from the porous medium surrounding a fissure with a low-elevation free exit. If a long fracture with high vertical extent (on the order of hundreds of meters) intersects a highly connected saturated porous medium, large volumes (on order 10 3 m 3/m of crack length) of water may be released within tens of minutes. The drainage rates from the model may be adequate to account for the Nevado del Huila events if the medium surrounding the crack contains a large volume of water and has high horizontal permeability. Finally, this simple but poorly understood mechanism can present a hazard on its own or compound other processes releasing water from volcanoes.« less

Groundwater drainage from fissures as a source for lahars

DOE PAGES

Johnson, P. J.; Valentine, G. A.; Stauffer, P. H.; ...

2018-03-22

One mechanism for generating lahars at volcanoes experiencing unrest is the disruption of internal aquifers. These disruptions can trigger releases of large quantities of groundwater. An example of such aquifer disruption occurred at Nevado del Huila Volcano, Colombia, during February and April 2007 when large fractures formed across the summit area of the volcano and lahars were emitted from them. Previous work interpreted that lahar volumes could not be accounted for by melted glacial snow or precipitation, and by elimination suggested that the primary water source was groundwater. Conceptual models have been developed for perched, confined aquifers that have beenmore » heated and pressurized by magma intrusions, followed by sudden pressure release and water emission during fracture formation. In this paper, we consider an alternative end member wherein water release from large fissures at volcanoes is driven by simple gravity drainage. We apply numerical modeling to quantify water discharge from the porous medium surrounding a fissure with a low-elevation free exit. If a long fracture with high vertical extent (on the order of hundreds of meters) intersects a highly connected saturated porous medium, large volumes (on order 10 3 m 3/m of crack length) of water may be released within tens of minutes. The drainage rates from the model may be adequate to account for the Nevado del Huila events if the medium surrounding the crack contains a large volume of water and has high horizontal permeability. Finally, this simple but poorly understood mechanism can present a hazard on its own or compound other processes releasing water from volcanoes.« less

GPR-derived architecture of a lahar-generated fan at Cotopaxi volcano, Ecuador

NASA Astrophysics Data System (ADS)

Ettinger, Susanne; Manville, Vern; Kruse, Sarah; Paris, Raphaël

2014-05-01

The internal geometry of volcaniclastic fans produced by aggradation during lahar events is difficult to examine in modern settings because of the frequent lack of three-dimensional exposures. This makes it challenging to (i) reconstruct the spatial and temporal evolution of such fans; and (ii) interpret observed facies stratigraphy in the context of lahar flow dynamics from proximal to distal fan reaches. This research therefore presents the results of a ground penetrating radar (GPR) survey of the Rumipamba fan at the mouth of the Burrohuaycu quebrada on the southwestern flank of Cotopaxi volcano. A survey grid consisting of 50 individual GPR profiles representing a total length of 19.4 km was constructed covering most of the 4-km2 large fan surface. All GPR profiles were collected using a PulseEKKO 100 with a 400 V transmitter. Fan sediments consist of sandy and gravelly lahar deposits, alternating with volcanic fallout including ash and pumice lapilli, at times reworked by fluvial processes. Deposits could be ground-truthed to a depth of ~3 m, whereas GPR penetration depth reaches 15 m. Data interpretation was based on classification into 15 distinct radar facies characterized by the nature of their bounding surfaces and/or internal features, cross-referenced where possible with shallow exposures. Three main facies were identified: parallel, irregular, and clinoform. Erosional contacts were distinguished from aggradational ones (vertical, channel fill, and lateral accretion). Flow parallel versus flow transverse and proximal-distal variations in deposit architecture were featured. The results of this study confirm the existence of two major channel systems in the northern and southern extremities of the fan and the more recent formation of a smaller central fan channel system. Deposit architecture is complex and facies chronologies illustrate that lahars have affected the entire survey area.

Snow and ice perturbation during historical volcanic eruptions and the formation of lahars and floods

USGS Publications Warehouse

Major, Jon J.; Newhall, Christopher G.

1989-01-01

Historical eruptions have produced lahars and floods by perturbing snow and ice at more than 40 volcanoes worldwide. Most of these volcanoes are located at latitudes higher than 35°; those at lower latitudes reach altitudes generally above 4000 m. Volcanic events can perturb mantles of snow and ice in at least five ways: (1) scouring and melting by flowing pyroclastic debris or blasts of hot gases and pyroclastic debris, (2) surficial melting by lava flows, (3) basal melting of glacial ice or snow by subglacial eruptions or geothermal activity, (4) ejection of water by eruptions through a crater lake, and (5) deposition of tephra fall. Historical records of volcanic eruptions at snow-clad volcanoes show the following: (1) Flowing pyroclastic debris (pyroclastic flows and surges) and blasts of hot gases and pyroclastic debris are the most common volcanic events that generate lahars and floods; (2) Surficial lava flows generally cannot melt snow and ice rapidly enough to form large lahars or floods; (3) Heating the base of a glacier or snowpack by subglacial eruptions or by geothermal activity can induce basal melting that may result in ponding of water and lead to sudden outpourings of water or sediment-rich debris flows; (4) Tephra falls usually alter ablation rates of snow and ice but generally produce little meltwater that results in the formation of lahars and floods; (5) Lahars and floods generated by flowing pyroclastic debris, blasts of hot gases and pyroclastic debris, or basal melting of snow and ice commonly have volumes that exceed 105 m3.The glowing lava (pyroclastic flow) which flowed with force over ravines and ridges...gathered in the basin quickly and then forced downwards. As a result, tremendously wide and deep pathways in the ice and snow were made and produced great streams of water (Wolf 1878).

Snow and ice perturbation during historical volcanic eruptions and the formation of lahars and floods

NASA Astrophysics Data System (ADS)

Major, Jon J.; Newhall, Christopher G.

1989-10-01

Historical eruptions have produced lahars and floods by perturbing snow and ice at more than 40 volcanoes worldwide. Most of these volcanoes are located at latitudes higher than 35°; those at lower latitudes reach altitudes generally above 4000 m. Volcanic events can perturb mantles of snow and ice in at least five ways: (1) scouring and melting by flowing pyroclastic debris or blasts of hot gases and pyroclastic debris, (2) surficial melting by lava flows, (3) basal melting of glacial ice or snow by subglacial eruptions or geothermal activity, (4) ejection of water by eruptions through a crater lake, and (5) deposition of tephra fall. Historical records of volcanic eruptions at snow-clad volcanoes show the following: (1) Flowing pyroclastic debris (pyroclastic flows and surges) and blasts of hot gases and pyroclastic debris are the most common volcanic events that generate lahars and floods; (2) Surficial lava flows generally cannot melt snow and ice rapidly enough to form large lahars or floods; (3) Heating the base of a glacier or snowpack by subglacial eruptions or by geothermal activity can induce basal melting that may result in ponding of water and lead to sudden outpourings of water or sediment-rich debris flows; (4) Tephra falls usually alter ablation rates of snow and ice but generally produce little meltwater that results in the formation of lahars and floods; (5) Lahars and floods generated by flowing pyroclastic debris, blasts of hot gases and pyroclastic debris, or basal melting of snow and ice commonly have volumes that exceed 105 m3. The glowing lava (pyroclastic flow) which flowed with force over ravines and ridges...gathered in the basin quickly and then forced downwards. As a result, tremendously wide and deep pathways in the ice and snow were made and produced great streams of water (Wolf 1878).

Lahar Hazards at Casita and San Cristóbal Volcanoes, Nicaragua

USGS Publications Warehouse

Vallance, J.W.; Schilling, S.P.; Devoli, G.; Reid, M.E.; Howell, M.M.; Brien, D.L.

2004-01-01

to form ash-fall deposits (tephra), debris avalanches, lava flows, and hot flowing mixtures of ash and rock (called pyroclastic flows). The chronology of activity at Casita is rather poorly known. Its last documented eruption occurred 8300 years ago, and included a pyroclastic flow. Tephra deposits exposed in the east crater suggest the possibility of subsequent eruptions. Work prior to Hurricane Mitch suggested that a part of the volcano’s apron that included the area inundated during the 1998 event south of Casita was a lahar pathway. Erosion during Hurricane Mitch revealed that at least three large lahars descended this pathway to distances of up to 10 km. This report describes the hazards of landslides and lahars in general, and discusses potential hazards from future landslides and lahars at San Cristóbal and Casita volcanoes in particular. The report also shows, in the accompanying lahar hazard-zonation maps, which areas are likely to be at risk from future landslides and lahars at Casita and San Cristóbal.

An approach to source characterization of tremor signals associated with eruptions and lahars

NASA Astrophysics Data System (ADS)

Kumagai, Hiroyuki; Mothes, Patricia; Ruiz, Mario; Maeda, Yuta

2015-11-01

Tremor signals are observed in association with eruption activity and lahar descents. Reduced displacement ( D R) derived from tremor signals has been used to quantify tremor sources. However, tremor duration is not considered in D R, which makes it difficult to compare D R values estimated for different tremor episodes. We propose application of the amplitude source location (ASL) method to characterize the sources of tremor signals. We used this method to estimate the tremor source location and source amplitude from high-frequency (5-10 Hz) seismic amplitudes under the assumption of isotropic S-wave radiation. We considered the source amplitude to be the maximum value during tremor. We estimated the cumulative source amplitude ( I s) as the offset value of the time-integrated envelope of the vertical seismogram of tremor corrected for geometrical spreading and medium attenuation in the 5-10-Hz band. For eruption tremor signals, we also estimated the cumulative source pressure ( I p) from an infrasonic envelope waveform corrected for geometrical spreading. We studied these parameters of tremor signals associated with eruptions and lahars and explosion events at Tungurahua volcano, Ecuador. We identified two types of eruption tremor at Tungurahua: noise-like inharmonic waveforms and harmonic oscillatory signals. We found that I s increased linearly with increasing source amplitude for lahar tremor signals and explosion events, but I s increased exponentially with increasing source amplitude for inharmonic eruption tremor signals. The source characteristics of harmonic eruption tremor signals differed from those of inharmonic tremor signals. We found a linear relation between I s and I p for both explosion events and eruption tremor. Because I p may be proportional to the total mass involved during an eruption episode, this linear relation suggests that I s may be useful to quantify eruption size. The I s values we estimated for inharmonic eruption tremor were

Long boundary drainage as a source of lahars: Can big cracks make big floods?

NASA Astrophysics Data System (ADS)

Johnson, P. J.; Valentine, G.; Lowry, C.; Sonder, I.; Stauffer, P. H.; Santacoloma, C.; Pulgarín, B.; Adriana, A.

2016-12-01

Two phreatic eruptions in 2007 at Nevado del Huila Volcano, Colombia, were associated with the formation of very large (estimated 2,000 m long by 50 m wide) fracture systems at the summit of the volcano. Lahars with volumes up to 75 million m3 followed formation of these fissures, damaging villages downstream. Previous work suggested that water for these lahars was sourced at least in part by groundwater within the edifice that was rapidly expelled during the eruptions. The mechanisms for the rapid release of large volumes of water are unclear and cannot be uniquely constrained based on available data, leading to multiple conceptual models. We examine one conceptual model in which water discharge results primarily from gravity-driven drainage through the walls of the newly-opened fracture. The presence of a topographically low pour-point on the side of the edifice allows this leaking water to escape, forming a lahar. Steady state calculations and numerical modeling of transient-state fluid flow using the Finite Element Heat and Mass model (FEHM, https://fehm.lanl.gov) are used to estimate the resulting discharges. Our results show that a pulse of water is rapidly released through a new fracture, with discharge decreasing as the medium drains. Emitted water volumes depend on the dimensions of the crack and particularly sensitive to the height of the draining fracture wall and the magnitude of the permeability increase created during the fracturing event. Hazardous lahar events could be generated by this mechanism if large cracks form in water-bearing edifices elsewhere.

A comparison of the Landsat image and LAHARZ-simulated lahar inundation hazard zone by the 2010 Merapi eruption

NASA Astrophysics Data System (ADS)

Lee, Seul-Ki; Lee, Chang-Wook; Lee, Saro

2015-06-01

Located above the Java subduction zone, Merapi Volcano is an active stratovolcano with a volcanic activity cycle of 1-5 years. Most Merapi eruptions are relatively small with volcanic explosivity index (VEI) of 1-3. However, the most recent eruption, which occurred in 2010, was quite violent with a VEI of 4 and 386 people were killed. In this study, lahars and pyroclastic flow zones were detected using optical Landsat images and the lahar and pyroclastic flow zone simulated using the LAHARZ program. To detect areal extents of lahar and pyroclastic flows using Landsat images, supervised classification was performed after atmospheric correction by using a cosine of the solar zenith correction (COST) model. As a result, the extracted dimensions of pyroclastic flows are nearly identical to the Calatrava Volcanic Province (CVP) monthly reports. Then, areas of potential lahar and pyroclastic flow inundation based on flow volume using the LAHARZ program were simulated and mapped. Finally, the detected lahars and pyroclastic flow zones were compared with the simulated potential zones using LAHARZ program and verified. Results showed satisfactory similarity (55.63 %) between the detected and simulated zone. The simulated zones using the LAHARZ program can be used as an essential volcanic hazard map for preventing life and property damages for Merapi Volcano and other hazardous volcanic areas. Also, the LAHARZ program can be used to map volcano hazards in other hazardous volcanic areas.

Probabilistic Volcanic Multi-Hazard Assessment at Somma-Vesuvius (Italy): coupling Bayesian Belief Networks with a physical model for lahar propagation

NASA Astrophysics Data System (ADS)

Tierz, Pablo; Woodhouse, Mark; Phillips, Jeremy; Sandri, Laura; Selva, Jacopo; Marzocchi, Warner; Odbert, Henry

2017-04-01

Volcanoes are extremely complex physico-chemical systems where magma formed at depth breaks into the planet's surface resulting in major hazards from local to global scales. Volcano physics are dominated by non-linearities, and complicated spatio-temporal interrelationships which make volcanic hazards stochastic (i.e. not deterministic) by nature. In this context, probabilistic assessments are required to quantify the large uncertainties related to volcanic hazards. Moreover, volcanoes are typically multi-hazard environments where different hazardous processes can occur whether simultaneously or in succession. In particular, explosive volcanoes are able to accumulate, through tephra fallout and Pyroclastic Density Currents (PDCs), large amounts of pyroclastic material into the drainage basins surrounding the volcano. This addition of fresh particulate material alters the local/regional hydrogeological equilibrium and increases the frequency and magnitude of sediment-rich aqueous flows, commonly known as lahars. The initiation and volume of rain-triggered lahars may depend on: rainfall intensity and duration; antecedent rainfall; terrain slope; thickness, permeability and hydraulic diffusivity of the tephra deposit; etc. Quantifying these complex interrelationships (and their uncertainties), in a tractable manner, requires a structured but flexible probabilistic approach. A Bayesian Belief Network (BBN) is a directed acyclic graph that allows the representation of the joint probability distribution for a set of uncertain variables in a compact and efficient way, by exploiting unconditional and conditional independences between these variables. Once constructed and parametrized, the BBN uses Bayesian inference to perform causal (e.g. forecast) and/or evidential reasoning (e.g. explanation) about query variables, given some evidence. In this work, we illustrate how BBNs can be used to model the influence of several variables on the generation of rain-triggered lahars

Seismic characterization of low-magnitude floods and lahars at La Lumbre ravine, Volcán de Colima (Mexico)

NASA Astrophysics Data System (ADS)

Coviello, Velio; Capra, Lucia; Márquez, Víctor H.; Procter, Jonathan; Walsh, Braden

2017-04-01

Volcán de Colima currently is the most active volcano in Mexico where a number of rain-induced lahars occur each year. After an explosive phase, lahar frequency increases due to the immediate reworking of pyroclastic material and it progressively decreases in the following years. This behavior was distinctly observed during the two last rainy seasons that followed the intense volcanic activity of July 2015. La Lumbre ravine drains the West-Southwestern slopes of Volcán de Colima and is one of the most active channels of the volcano. Since 2014, monitoring is performed in a heavily instrumented cross-section located at 1580 m a.s.l. on the left bank of the channel. At the present day, the monitoring station is equipped with a raingauge, two stage sensors, a videocamera, and different seismic devices. At La Lumbre, lahars initiate as dilute, sediment-laden stream flows and with the entrainment of additional sediment they evolve into hyper-concentrations and debris flows. The hydro-repellency mechanism of the highly vegetated volcanic soils can explain the high frequency of lahars triggered by low-intensity rainfall events: under these hydrophobic conditions, infiltration is inhibited and runoff is facilitated at less highly peaked discharges that are more likely to initiate lahars that can have an impact on the inhabited areas located downstream. This is the reason why the possibility to detect not only large lahars but also low-magnitude flows is particularly important at La Lumbre. Here we present monitoring data of processes ranging from stream flows to large lahars that occurred during the last rainy seasons along La Lumbre ravine. In particular, we investigate the possibility to estimate the sediment concentration of debris flood and small lahars using a very easy-to-install and low-cost seismic sensor, i.e. a geophone, installed outside the flow path. For instance, we show how a hyper-concentrated flow characterized by a mean velocity of less than 1 meter per

Rheological behavior of water-ash mixtures from Sakurajima and Ontake volcanoes: implications for lahar flow dynamics

NASA Astrophysics Data System (ADS)

Kurokawa, Aika K.; Ishibashi, Hidemi; Miwa, Takahiro; Nanayama, Futoshi

2018-06-01

Lahars represent one of the most serious volcanic hazards, potentially causing severe damage to the surrounding environment, not only immediately after eruption but also later due to rainfall or snowfall. The flow of a lahar is governed by volcanic topography and its rheological behavior, which is controlled by its volume, microscale properties, and the concentration of particles. However, the effects of particle properties on the rheology of lahars are poorly understood. In this study, viscosity measurements were performed on water-ash mixtures from Sakurajima and Ontake volcanoes. Samples from Sakurajima show strong and simple shear thinning, whereas those from Ontake show viscosity fluctuations and a transition between shear thinning and shear thickening. Particle analysis of the volcanic ash together with a theoretical analysis suggests that the rheological difference between the two types of suspension can be explained by variations in particle size distribution and shape. In particular, to induce the complex rheology of the Ontake samples, coexistence of two particle size groups may be required since two independent behaviors, one of which follows the streamline (Stokes number St << 1, inertial number I < 0.001) and the other shows a complicated motion ( St 1, I 0.001), compete against each other. The variations in the spatial distribution of polydisperse particles, and the time dependence of this feature which generates apparent rheological changes, indicate that processes related to microscale particle heterogeneities are important in understanding the flow dynamics of lahars and natural polydisperse granular-fluid mixtures in general.

Mitigation of hazards from future lahars from Mount Merapi in the Krasak River channel near Yogyakarta, central Java

USGS Publications Warehouse

Ege, John R.; ,

1983-01-01

Procedures for reducing hazards from future lahars and debris flows in the Krasak River channel near Yogyakarta, Central Java, Indonesia, include (1) determining the history of the location, size, and effects of previous lahars and debris flows, and (2) decreasing flow velocities. The first may be accomplished by geologic field mapping along with acquiring information by interviewing local residents, and the second by increasing the cross sectional area of the river channel and constructing barriers in the flow path.

Modeled inundation limits of potential lahars from Mount Adams in the White Salmon River Valley, Washington

USGS Publications Warehouse

Griswold, Julia P.; Pierson, Thomas C.; Bard, Joseph A.

2018-05-09

Lahars large enough to reach populated areas are a hazard at Mount Adams, a massive volcano in the southern Cascade Range of Washington State (fig. 1). It is considered to be still active and has the potential to erupt again. By definition, lahars are gravity-driven flows of water-saturated mixtures of mud and rock (plus or minus ice, wood, and other debris), which originate from volcanoes and have a variety of potential triggering mechanisms (Vallance, 2000; Vallance and Iverson, 2015). Flowing mixtures can range in fluid consistency from something like a milkshake to something more like wet concrete, and they behave like flash floods, in that they can appear suddenly in river channels with little warning and commonly have boulder- or log-choked flow fronts. Lahars are hazardous because they can flow rapidly in confined valleys (commonly 20–35 miles per hour [mph] or 9–16 meters per second [m/s]), can travel more than 100 miles (mi) (161 kilometers [km]) from a source volcano, and can move with incredible destructive force, carrying multi-ton boulders and logs that can act as battering rams (Pierson, 1998). The biggest threats from lahars to downstream communities are present during eruptive activity, and impacts to communities can be dire. For example, a very large eruption-triggered lahar in Colombia in 1985 surprised and killed more than 20,000 people in a large town located about 45 mi (72 km) downstream and out of sight of the volcano that produced it (Pierson and others, 1990).Mount Adams, one of the largest volcanoes in the Cascade Range, is a composite stratocone composed primarily of andesite lava flows. It has been the most continuously active volcano within the 480-mi2 Mount Adams volcanic field—a region covering parts of Klickitat, Skamania, Yakima, andLewis Counties and part of the Yakama Nation Reservation in Washington State (Hildreth and Fierstein,1995, 1997). About 500,000 years in age, Mount Adams reached its present size by about 15

Perturbation and melting of snow and ice by the 13 November 1985 eruption of Nevado del Ruiz, Colombia, and consequent mobilization, flow and deposition of lahars

USGS Publications Warehouse

Pierson, T.C.; Janda, R.J.; Thouret, J.-C.; Borrero, C.A.

1990-01-01

A complex sequence of pyroclastic flows and surges erupted by Nevado del Ruiz volcano on 13 November 1985 interacted with snow and ice on the summit ice cap to trigger catastrophic lahars (volcanic debris flows), which killed more than 23,000 people living at or beyond the base of the volcano. The rapid transfer of heat from the hot eruptive products to about 10 km2 of the snowpack, combined with seismic shaking, produced large volumes of meltwater that flowed downslope, liquefied some of the new volcanic deposits, and generated avalanches of saturated snow, ice and rock debris within minutes of the 21:08 (local time) eruption. About 2 ?? 107 m3 of water was discharged into the upper reaches of the Molinos, Nereidas, Guali, Azufrado and Lagunillas valleys, where rapid entrainment of valley-fill sediment transformed the dilute flows and avalanches to debris flows. Computed mean velocities of the lahars at peak flow ranged up to 17 m s-1. Flows were rapid in the steep, narrow upper canyons and slowed with distance away from the volcano as flow depth and channel slope diminished. Computed peak discharges ranged up to 48,000 m3 s-1 and were greatest in reaches 10 to 20 km downstream from the summit. A total of about 9 ?? 107 m3 of lahar slurry was transported to depositional areas up to 104 km from the source area. Initial volumes of individual lahars increased up to 4 times with distance away from the summit. The sedimentology and stratigraphy of the lahar deposits provide compelling evidence that: (1) multiple initial meltwater pulses tended to coalesce into single flood waves; (2) lahars remained fully developed debris flows until they reached confluences with major rivers; and (3) debris-flow slurry composition and rheology varied to produce gradationally density-stratified flows. Key lessons and reminders from the 1985 Nevado del Ruiz volcanic eruption are: (1) catastrophic lahars can be generated on ice- and snow-capped volcanoes by relatively small eruptions; (2

Lahar hazards at Agua volcano, Guatemala

USGS Publications Warehouse

Schilling, S.P.; Vallance, J.W.; Matías, O.; Howell, M.M.

2001-01-01

At 3760 m, Agua volcano towers more than 3500 m above the Pacific coastal plain to the south and 2000 m above the Guatemalan highlands to the north. The volcano is within 5 to 10 kilometers (km) of Antigua, Guatemala and several other large towns situated on its northern apron. These towns have a combined population of nearly 100,000. It is within about 20 km of Escuintla (population, ca. 100,000) to the south. Though the volcano has not been active in historical time, or about the last 500 years, it has the potential to produce debris flows (watery flows of mud, rock, and debris—also known as lahars when they occur on a volcano) that could inundate these nearby populated areas.

Relationship between geomorphology and lithotypes of lahar deposit from Chokai volcano, Japan

NASA Astrophysics Data System (ADS)

Minami, Y.; Ohba, T.; Hayashi, S.; Kataoka, K.

2013-12-01

Chokai volcano, located in the northern Honshu arc in Japan, is an andesitic stratovolcano that collapsed partly at ca. 2500 years ago. A post collapse lahar deposit (Shirayukigawa lahar deposit) is distributed in the northern foot of the volcanic edifice. The deposit consists of 16 units of debris flow, hyperconcentrated flow and streamflow deposits. The Shirayukigawa lahar deposit has a total thickness of 30 m and overlies the 2.5-ka Kisakata debris avalanche deposit. Shirayukigawa lahar deposit forms volcanic fan and volcanic apron. The volcanic fan is subdivided into four areas on the basis of slope angles and of geomorphological features: 1) steeply sloped area, 2) moderately sloped area, 3) gently sloped area and 4) horizontal area. From sedimentary facies and structures, each unit of the Shirayukigawa lahar deposit is classified into one of four lithotypes: clast-supported debris flow deposit (Cc), matrix-supported debris flow deposit (Cm1), hyperconcentrated flow deposit (Cm2) and streamflow deposit (Sl). Each type has the following lithological characteristics. The lithotypes are well correlated with the geomorphology of the volcanic fan. The steeply-sloped and the moderately-sloped areas are dominated by Cc, Cm1, and Cm2, and The horizontal area are dominated by Sl. Debris flow deposit (Cc) is massive, very poorly sorted, partly graded, and clast-supported with polymictic clasts dominated by subrounded to rounded volcanic clasts. Matrix is sandy to muddy. Preferred clast orientation are present. Debris flow deposit (Cm1) is massive, very poorly sorted, and matrix-supported with polymictic clasts dominated by subrounded to rounded volcanic clasts. Matrix is sandy to muddy. Some layers exhibit coarse-tail normal/inverse grading. Most clasts are oriented. Hyperconcentrated flow deposit (Cm2) is massive to diffusely laminated, very poorly sorted and matrix-supported with polymictic clasts dominated by subrounded to rounded volcanic rocks. Matrix is sandy. The

Comparative lahar hazard mapping at Volcan Citlaltépetl, Mexico using SRTM, ASTER and DTED-1 digital topographic data

USGS Publications Warehouse

Hubbard, Bernard E.; Sheridan, Michael F.; Carrasco-Nunez, Gerardo; Diaz-Castellon, Rodolfo; Rodriguez, Sergio R.

2007-01-01

Finally, ASTERs 60 km swath width and 8% duty cycle presents a challenge for mapping lahar inundation hazards at E–W oriented stream valleys in low-latitude areas with persistent cloud cover. However, its continued operations enhances its utility as a means for updating the continuous but one-time coverage of SRTM, and for filling voids in the SRTM dataset such as those that occur along steep-sided valleys prone to hazards from future lahars.

Hydrological control of large hurricane-induced lahars: evidence from rainfall-runoff modeling, seismic and video monitoring

NASA Astrophysics Data System (ADS)

Capra, Lucia; Coviello, Velio; Borselli, Lorenzo; Márquez-Ramírez, Víctor-Hugo; Arámbula-Mendoza, Raul

2018-03-01

The Volcán de Colima, one of the most active volcanoes in Mexico, is commonly affected by tropical rains related to hurricanes that form over the Pacific Ocean. In 2011, 2013 and 2015 hurricanes Jova, Manuel and Patricia, respectively, triggered tropical storms that deposited up to 400 mm of rain in 36 h, with maximum intensities of 50 mm h -1. The effects were devastating, with the formation of multiple lahars along La Lumbre and Montegrande ravines, which are the most active channels in sediment delivery on the south-southwest flank of the volcano. Deep erosion along the river channels and several marginal landslides were observed, and the arrival of block-rich flow fronts resulted in damages to bridges and paved roads in the distal reaches of the ravines. The temporal sequence of these flow events is reconstructed and analyzed using monitoring data (including video images, seismic records and rainfall data) with respect to the rainfall characteristics and the hydrologic response of the watersheds based on rainfall-runoff numerical simulation. For the studied events, lahars occurred 5-6 h after the onset of rainfall, lasted several hours and were characterized by several pulses with block-rich fronts and a maximum flow discharge of 900 m3 s -1. Rainfall-runoff simulations were performer using the SCS-curve number and the Green-Ampt infiltration models, providing a similar result in the detection of simulated maximum watershed peaks discharge. Results show different behavior for the arrival times of the first lahar pulses that correlate with the simulated catchment's peak discharge for La Lumbre ravine and with the peaks in rainfall intensity for Montegrande ravine. This different behavior is related to the area and shape of the two watersheds. Nevertheless, in all analyzed cases, the largest lahar pulse always corresponds with the last one and correlates with the simulated maximum peak discharge of these catchments. Data presented here show that flow pulses

Rheological Variations in Lahars Expected to Flow Along the Sides of Sakurajima and Ontake Volcanoes, Japan

NASA Astrophysics Data System (ADS)

Kurokawa, A. K.; Ishibashi, H.

2016-12-01

Volcanic ash is known to accumulate on the ground surface around volcano after eruptions. Once the ash gains weight and mixes with water to a critical point, the mixture of volcanic ash and water runs down a side of volcano causing severe damage to the ambient environment. The flow is referred to as lahar that is widely observed all over the world and it occasionally generates seismic signals [Walsh et al., 2016; Ogiso and Yomogida, 2015]. Sometimes it happens just after an eruption [Nakayama and Kuroda, 2003] whereas a large debris flow, which occurred about 30 years after the latest eruption due to heavy rainfall is also reported [Ogiso and Yomogida, 2015]. Thus when the lahar starts flowing is a key. In order to understand flow characteristics of lahar, it is important to focus on the rheology. However, little is known about the rheological property although the experimental condition can be controlled at atmospheric pressure and ambient temperature. This is an advantage when compared with magma and rock, which need to reach high-pressure and/or high-temperature conditions to be measured. Based on the background, we have performed basic rheological measurements using mixtures of water and volcanic ashes collected at Sakurajima and Ontake volcanoes in Japan. The first important point of our findings is that the two types of mixtures show non-linear characteristics differently. For instance, the viscosity variation strongly depends on the water content in the case of Sakurajima sample while the viscosity fluctuates within a certain definite range of shear rate using Ontake sample. Since these non-linear characteristics are related to structural changes in the flow, our results indicate that the flow of lahar is time-variable and complicated. In this presentation, we report the non-linear rheology in detail and go into the relation to temporal changes in the flow.

Lahar hazards at Mombacho Volcano, Nicaragua

USGS Publications Warehouse

Vallance, J.W.; Schilling, S.P.; Devoli, G.

2001-01-01

Mombacho volcano, at 1,350 meters, is situated on the shores of Lake Nicaragua and about 12 kilometers south of Granada, a city of about 90,000 inhabitants. Many more people live a few kilometers southeast of Granada in 'las Isletas de Granada and the nearby 'Peninsula de Aseses. These areas are formed of deposits of a large debris avalanche (a fast moving avalanche of rock and debris) from Mombacho. Several smaller towns with population, in the range of 5,000 to 12,000 inhabitants are to the northwest and the southwest of Mombacho volcano. Though the volcano has apparently not been active in historical time, or about the last 500 years, it has the potential to produce landslides and debris flows (watery flows of mud, rock, and debris -- also known as lahars when they occur on a volcano) that could inundate these nearby populated areas. -- Vallance, et.al., 2001

Alteration, slope-classified alteration, and potential lahar inundation maps of volcanoes for the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Volcano Archive

USGS Publications Warehouse

Mars, John C.; Hubbard, Bernard E.; Pieri, David; Linick, Justin

2015-01-01

This study was undertaken during 2012–2013 in cooperation with the National Aeronautics and Space Administration (NASA). Since completion of this study, a new lahar modeling program (LAHAR_pz) has been released, which may produce slightly different modeling results from the LAHARZ model used in this study. The maps and data from this study should not be used in place of existing volcano hazard maps published by local authorities. For volcanoes without hazard maps and (or) published lahar-related hazard studies, this work will provide a starting point from which more accurate hazard maps can be produced. This is the first dataset to provide digital maps of altered volcanoes and adjacent watersheds that can be used for assessing volcanic hazards, hydrothermal alteration, and other volcanic processes in future studies.

Lahar Hazards at Concepción volcano, Nicaragua

USGS Publications Warehouse

Vallance, J.W.; Schilling, S.P.; Devoli, G.; Howell, M.M.

2001-01-01

Concepción is one of Nicaragua’s highest and most active volcanoes. The symmetrical cone occupies the northeastern half of a dumbbell shaped island called Isla Ometepa. The dormant volcano, Maderas, occupies the southwest half of the island. A narrow isthmus connects Concepción and Maderas volcanoes. Concepción volcano towers more than 1600 m above Lake Nicaragua and is within 5 to 10 km of several small towns situated on its aprons at or near the shoreline. These towns have a combined population of nearly 5,000. The volcano has frequently produced debris flows (watery flows of mud, rock, and debris—also known as lahars when they occur on a volcano) that could inundate these nearby populated areas. Concepción volcano has erupted more than 25 times in the last 120 years. Its first recorded activity was in AD 1883. Eruptions in the past century, most of which have originated from a small summit crater, comprise moderate explosions, ash that falls out of eruption plumes (called tephra), and occasional lava flows. Near the summit area, there are accumulations of rock that were emplaced hot (pyroclastic deposits), most of which were hot enough to stick together during deposition (a process called welding). These pyroclastic rocks are rather weak, and tend to break apart easily. The loose volcanic rock remobilizes during heavy rain to form lahars. Volcanic explosions have produced blankets of tephra that are distributed downwind, which on Isla Ometepe is mostly to the west. Older deposits at the west end of the island that are up to 1 m thick indicate larger explosive events have happened at Concepción volcano in prehistoric time. Like pyroclastic-flow deposits, loose tephra on the steep slopes of the volcano provides source material that heavy rainstorms and earthquakes can mobilize to trigger debris flow.

The heat source of Ruapehu crater lake; deductions from the energy and mass balances

NASA Astrophysics Data System (ADS)

Hurst, A. W.; Bibby, H. M.; Scott, B. J.; McGuinness, M. J.

1991-05-01

Regular observations of temperature, outflow rates and water chemistry of Crater Lake, Mt. Ruapehu, New Zealand have been made for the last 25 years. These data have been used to derive a model of the dynamics of the lake, and determine the input of energy, mass, and chloride from the volcano to the Crater Lake. The recent, relatively quiescent state of the volcano, when virtually no heat has been input to the lake, has also enabled an assessment to be made of the surface heat loss characteristics, which play an important role in the model of the lake. The modelling suggests that since about 1982 the ratio of the volcanic heat to mass added to the base of the lake is about 6 MJ/kg, which is not compatible with heating of the lake by magmatic steam alone. Thus, only about 50% of the heating has been by magmatic steam. It is suggested that heat could be transferred from a magmatic source to the region below the lake by a heat-pipe mechanism, commonly associated with geothermal systems. The simultaneous upward movement of vapour phase, and downward movement of liquid phase from condensed vapour allows efficient heat transfer without overall mass transfer. The permeability necessary to supply the required heat is of the order of 10 darcy, and is consistent with a rubble filled vent. For at least the last five years, there has been a characteristic pattern in the Crater Lake temperature record, with alternate heating and cooling phases. The heating phase generally lasts for one or two months, while the cooling phase lasts for six months to a year. A possible explanation for this cyclic behaviour is the presence of a layer of liquid sulphur under Crater Lake, acting as a partial barrier between the heat-pipe and the lake. The unusual variations of the viscosity of liquid sulphur with temperature will mean that at temperatures greater than 160°C, the layer of sulphur becomes highly viscous and would block any upwards steam flow and hence stop the heat input to Crater

Insights into lahar deposition processes in the Curah Lengkong (Semeru Volcano, Indonesia) using photogrammetry-based geospatial analysis, near-surface geophysics and CFD modelling

NASA Astrophysics Data System (ADS)

Gomez, C.; Lavigne, F.; Sri Hadmoko, D.; Wassmer, P.

2018-03-01

Semeru Volcano is an active stratovolcano located in East Java (Indonesia), where historic lava flows, occasional pyroclastic flows and vulcanian explosions (on average every 5 min to 15 min) generate a stock of material that is remobilized by lahars, mostly occurring during the rainy season between October and March. Every year, several lahars flow down the Curah Lengkong Valley on the South-east flank of the volcano, where numerous lahar studies have been conducted. In the present contribution, the objective was to study the spatial distribution of boulder-size clasts and try to understand how this distribution relates to the valley morphology and to the dynamic and deposition dynamic of lahars. To achieve this objective, the method relies on a combination of (1) aerial photogrammetry-derived geospatial data on boulders' distribution, (2) ground penetrating radar data collected along a 2 km series of transects and (3) a CFD model of flow to analyse the results from the deposits. Results show that <1 m diameter boulders are evenly distributed along the channel, but that lava flow deposits visible at the surface of the river bed and SABO dams increase the concentration of clasts upstream of their position. Lateral input of boulders from collapsing lava-flow deposits can bring outsized clasts in the system that tend to become trapped at one location. Finally, the comparison between the CFD simulation and previous research using video imagery of lahars put the emphasis the fact that there is no direct link between the sedimentary units observed in the field and the flow that deposited them. Both grain size, flow orientation, matrix characteristics can be very different in a deposit for one single flow, even in confined channels like the Curah Lengkong.

Holocene lahars and their byproducts along the historical path of the White River between Mount Rainier and Seattle: Geological Society of America Field Trip

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, T A; Zehfuss, P H; Atwater, B F

2003-10-16

Clay-poor lahars of late Holocene age from Mount Rainier change down the White River drainage into lahar-derived fluvial and deltaic deposits that filled an arm of Puget Sound between the sites of Auburn and Seattle, 110-150 km downvalley from the volcano's summit. Lahars in the debris-flow phase left cobbly and bouldery deposits on the walls of valleys within 70 km of the summit. At distances of 80-110 km, transitional (hyperconcentrated) flows deposited pebbles and sand that coat terraces in a gorge incised into glacial drift and the mid-Holocene Osceola Mudflow. On the broad, level floor of the Kent valley atmore » 110-130 km, lahars in the runout or streamflow phase deposited mostly sand-size particles that locally include the trunks of trees probably entrained by the flows. Beyond 130 km, in the Duwamish valley of Tukwila and Seattle, laminated andesitic sand derived from Mount Rainier built a delta northward across the Seattle fault. This distal facies, warped during an earthquake in A.D. 900-930, rests on estuarine mud at depths as great as 20 m. The deltaic filling occurred in episodes that appear to overlap in time with the lahars. As judged from radiocarbon ages of twigs and logs, at least three episodes of distal deposition postdate the Osceola Mudflow. One of these episodes occurred about 2200-2800 cal yr B.P., and two others occurred 1700-1000 cal yr B.P. The most recent episode ended by about the time of the earthquake of A.D. 900-930. The delta's northward march to Seattle averaged between 6 and 14 m/yr in the late Holocene.« less

Simulation of three lahars in the Mount St Helens area, Washington using a one-dimensional, unsteady-state streamflow model

USGS Publications Warehouse

Laenen, Antonius; Hansen, R.P.

1988-01-01

A one-dimensional, unsteady-state, open-channel model was used to analytically reproduce three lahar events. Factors contributing to the success of the modeling were: (1) the lahars were confined to a channel, (2) channel roughness was defined by field information, and (3) the volume of the flow remained relatively unchanged for the duration of the peak. Manning 's 'n ' values used in computing conveyance in the model were subject to the changing rheology of the debris flow and were calculated from field cross-section information (velocities used in these calculations were derived from super-elevation or run-up formulas). For the events modeled in this exercise, Manning 's 'n ' calculations ranged from 0.020 to 0.099. In all lahar simulations, the rheology of the flow changed in a downstream direction during the course of the event. Chen 's 'U ', the mudflow consistency index, changed approximately an order of magnitude for each event. The ' u ' values ranged from 5-2,260 kg/m for three events modeled. The empirical approach adopted in this paper is useful as a tool to help predict debris-flow behavior, but does not lead to understanding the physical processes of debris flows. (Author 's abstract)

STS-68 radar image: Mt. Pinatubo, Philippines

NASA Image and Video Library

1994-10-07

STS068-S-053 (7 October 1994) --- These are color composite radar images showing the area around Mount Pinatubo in the Philippines. The images were acquired by the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) aboard the Space Shuttle Endeavour on April 14, 1994 (left image) and October 5, 1994 (right image). The images are centered at about 15 degrees north latitude and 120.5 degrees east longitude. Both images were obtained with the same viewing geometry. The color composites were made by displaying the L-Band (horizontally transmitted and received) in red; the L-Band (horizontally transmitted and vertically received) in green; and the C-Band (horizontally transmitted and vertically received) in blue. The area shown is approximately 40 by 65 kilometers (25 by 40 miles). The main volcanic crater on Mount Pinatubo produced by the June 1991 eruptions and the steep slopes on the upper flanks of the volcano are easily seen in these images. Red on the high slopes shows the distribution of the ash deposited during the 1991 eruption, which appears red because of the low cross-polarized radar returns at C and L Bands. The dark drainage's radiating away from the summit are smooth mud flows, which even three years after the eruption continue to flood the river valleys after heavy rain. Comparing the two images shows that significant changes have occurred in the intervening five months along the Pasig-Potero rivers (the dark area in the lower right of the images). Mud flows, called "lahars", that occurred during the 1994 monsoon season filled the river valleys, allowing the lahars to spread over the surrounding countryside. Three weeks before the second image was obtained, devastating lahars more than doubled the area affected in the Pasig-Potero rivers, which is clearly visible as the increase in dark area on the lower right of the images. Migration of deposition to the east (right) has affected many communities. Newly affected areas included the

Lahars in and around the Taipei basin: Implications for the activity of the Shanchiao fault

NASA Astrophysics Data System (ADS)

Song, Sheng-Rong; Chen, Tsu-Mo; Tsao, Shuhjong; Chen, Huei-Fen; Liu, Huan-Chi

2007-11-01

In the last decade, more than 21 deep geological cores have been drilled in the Taipei basin to obtain a firmer grasp of its basic geology and engineering properties prior to the construction of new infrastructure. Thirteen of those cores contain lahar deposits, with the number of layers varying from one to three and the thickness of each layer varying from several to over 100 m. Based on their occurrence, petrology and geochemistry, it has been determined that the deposits originated from the southern slope of the Tatun Volcano Group (TVG). K-Ar age dating has shown that the lower layer of lahars was deposited less than 0.4 Ma, and this is clearly correlated to outcrops in the Kauntu, Chengtzeliao and Shihtzutao areas. These findings may well suggest that the Taipei basin has been formed in last 0.4 Ma and that the Shanchiao normal fault commenced its activity within this period. The surface trace and the activity of the Shanchiao normal fault have also been inferred and subsequently defined from stratigraphic data derived from these cores.

RiskScape Volcano: Development of a risk assessment tool for volcanic hazards

NASA Astrophysics Data System (ADS)

Deligne, Natalia; King, Andrew; Jolly, Gill; Wilson, Grant; Wilson, Tom; Lindsay, Jan

2013-04-01

RiskScape is a multi-hazard risk assessment tool developed by GNS Science and the National Institute of Water and Atmospheric Research Ltd. (NIWA) in New Zealand that models the risk and impact of various natural hazards on a given built environment. RiskScape has a modular structure: the hazard module models hazard exposure (e.g., ash thickness at a given location), the asset module catalogues assets (built environment, infrastructure, and people) and their attributes exposed to the hazard, and the vulnerability module models the consequences of asset exposure to the hazard. Hazards presently included in RiskScape are earthquakes, river floods, tsunamis, windstorms, and ash from volcanic eruptions (specifically from Ruapehu). Here we present our framework for incorporating other volcanic hazards (e.g., pyroclastic density currents, lava flows, lahars, ground deformation) into RiskScape along with our approach for assessing asset vulnerability. We also will discuss the challenges of evaluating risk for 'point source' (e.g., stratovolcanoes) vs 'diffuse' (e.g., volcanic fields) volcanism using Ruapehu and the Auckland volcanic field as examples. Once operational, RiskScape Volcano will be a valuable resource both in New Zealand and internationally as a practical tool for evaluating risk and also as an example for how to predict the consequences of volcanic eruptions on both rural and urban environments.

Mt, St. Helens, Mt. Adams, and Mt. Rainier, WA, USA

NASA Technical Reports Server (NTRS)

1992-01-01

This view of Mt. St. Helens (46.5N, 122.0W), taken 12 years after the volcanic eruption on 18 May 1980, in which the top 1300 ft. of the 9,677 ft. mountain was blown away, shows the rapid vegetation recovery within the blast area. Many fir trees have grown to heights of 20 ft. within the 150 square mile devastated area. Mt. Adams, an extinct volcano is just to the west and Mt. Rainier is to the north. Checkerboard logging can be seen throughout.

2. BUILDING MT76A AND MT76B FROM STREET, BUILDING MT76A IN ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

2. BUILDING MT-76-A AND MT-76-B FROM STREET, BUILDING MT-76-A IN FOREGROUND - Fort Keogh, Livestock & Range Research Station, 3 miles west of Miles City on U.S. Highway 10, Miles City, Custer County, MT

Eruption-triggered avalanche, flood, and lahar at Mount St. Helens - Effects of winter snowpack

USGS Publications Warehouse

Waitt, R.B.; Pierson, T.C.; MacLeod, N.S.; Janda, R.J.; Voight, B.; Holcomb, R.T.

1983-01-01

An explosive eruption of Mount St. Helens on 19 March 1982 had substantial impact beyond the vent because hot eruption products interacted with a thick snowpack. A blast of hot pumice, dome rocks, and gas dislodged crater-wall snow that avalanched through the crater and down the north flank. Snow in the crater swiftly melted to form a transient lake, from which a destructive flood and lahar swept down the north flank and the North Fork Toutle River.

Interrelations among pyroclastic surge, pyroclastic flow, and lahars in Smith Creek valley during first minutes of 18 May 1980 eruption of Mount St. Helens, USA

USGS Publications Warehouse

Brantley, S.R.; Waitt, R.B.

1988-01-01

A devastating pyroclastic surge and resultant lahars at Mount St. Helens on 18 May 1980 produced several catastrophic flowages into tributaries on the northeast volcano flank. The tributaries channeled the flows to Smith Creek valley, which lies within the area devastated by the surge but was unaffected by the great debris avalanche on the north flank. Stratigraphy shows that the pyroclastic surge preceded the lahars; there is no notable "wet" character to the surge deposits. Therefore the lahars must have originated as snowmelt, not as ejected water-saturated debris that segregated from the pyroclastic surge as has been inferred for other flanks of the volcano. In stratigraphic order the Smith Creek valley-floor materials comprise (1) a complex valley-bottom facies of the pyroclastic surge and a related pyroclastic flow, (2) an unusual hummocky diamict caused by complex mixing of lahars with the dry pyroclastic debris, and (3) deposits of secondary pyroclastic flows. These units are capped by silt containing accretionary lapilli, which began falling from a rapidly expanding mushroom-shaped cloud 20 minutes after the eruption's onset. The Smith Creek valley-bottom pyroclastic facies consists of (a) a weakly graded basal bed of fines-poor granular sand, the deposit of a low-concentration lithic pyroclastic surge, and (b) a bed of very poorly sorted pebble to cobble gravel inversely graded near its base, the deposit of a high-concentration lithic pyroclastic flow. The surge apparently segregated while crossing the steep headwater tributaries of Smith Creek; large fragments that settled from the turbulent surge formed a dense pyroclastic flow along the valley floor that lagged behind the front of the overland surge. The unusual hummocky diamict as thick as 15 m contains large lithic clasts supported by a tough, brown muddy sand matrix like that of lahar deposits upvalley. This unit contains irregular friable lenses and pods meters in diameter, blocks incorporated from

Does exposure to lahars risk affect people's risk-preferences and other attitudes? Field data from incentivized experiments and surveys in Arequipa - Peru

NASA Astrophysics Data System (ADS)

Heitz, C.; Bchir, M. A.; Willinger, M.

2012-04-01

Many individuals are exposed to risks which are either difficult to insure or hard to mitigate, such as tsunamis, floods, volcanic eruption,... Little is known about how exposure to such risks shapes individuals' risk-preferences. Are they more (less) risk-averse than people who are unexposed to such hazard risk? We provide empirical evidence about this question for the case of individuals exposed to lahars risk. Lahars are sediments laden flows from volcanic origin. We compare the risk-attitude of people exposed - versus non-exposed ones - to lahars risk. The originality of our approach is that we combine standard survey data to behavioural data collected by means of incentivized experiments. We collected data in various locations of the city of Arequipa (Peru), a densely populated area down the volcano El Misti. Participants in our experiment were identified as (non-)exposed to lahars risk based on risk zoning. Our survey questionnaire allows us to compare assessed exposure and the perceived exposure. We elicit risk-preference, time-preference, and trusting behaviour (a measure of social capital) for each respondent in addition to standard survey data. Our field experiment involved a total of 209 respondents from exposed and non-exposed areas. While respondents endow legitimacy in risk reduction (more than 74%) to a national authority (Defensa Civil) in charge of the management of risk in the city, more than 64% of them consider that they are not sufficiently informed about the behaviours to adopt in case of a disaster. Respondents are therefore poorly motivated to adopt initiatives of self-protection (23%) and express instead high expectations with respect to authorities' actions for decreasing their vulnerability (73%). The experimental data show that participants who live in exposed areas are not significantly more risk-averse than those living in non-exposed ones. Furthermore, there is no significant difference in time-preference between exposed and non

Heteromeric MT1/MT2 Melatonin Receptors Modulate Photoreceptor Function

PubMed Central

Baba, Kenkichi; Benleulmi-Chaachoua, Abla; Journé, Anne-Sophie; Kamal, Maud; Guillaume, Jean-Luc; Dussaud, Sébastien; Gbahou, Florence; Yettou, Katia; Liu, Cuimei; Contreras-Alcantara, Susana; Jockers, Ralf; Tosini, Gianluca

2013-01-01

The formation of G protein-coupled receptor (GPCR) heteromers elicits signaling diversification and holds great promise for improved drug selectivity. Most studies have been conducted in heterologous expression systems; however, in vivo validation is missing from most cases thus questioning the physiological significance of GPCR heteromerization. Melatonin MT1 and MT2 receptors have been shown to exist as homo- and heteromers in vitro. We show here that the effect of melatonin on rod photoreceptor light sensitivity is mediated by melatonin MT1/MT2 receptor heteromers. This effect involves activation of the heteromer-specific PLC/PKC pathway and is abolished in MT1−/− and MT2−/− mice as well as in mice overexpressing a non-functional MT2 receptor mutant that competes with the formation of functional MT1/MT2 heteromers in photoreceptor cells. This study establishes the essential role of melatonin receptor heteromers in retinal function and supports the physiological importance of GPCR heteromerization. Finally, our work may have important therapeutic implications, as the heteromer complex may provide a unique pharmacological target to improve photoreceptor functioning and to extend the viability of photoreceptors during aging. PMID:24106342

Combining criteria for delineating lahar- and flash-flood-prone hazard and risk zones for the city of Arequipa, Peru

NASA Astrophysics Data System (ADS)

Thouret, J.-C.; Enjolras, G.; Martelli, K.; Santoni, O.; Luque, J. A.; Nagata, M.; Arguedas, A.; Macedo, L.

2013-02-01

Arequipa, the second largest city in Peru, is exposed to many natural hazards, most notably earthquakes, volcanic eruptions, landslides, lahars (volcanic debris flows), and flash floods. Of these, lahars and flash floods, triggered by occasional torrential rainfall, pose the most frequently occurring hazards that can affect the city and its environs, in particular the areas containing low-income neighbourhoods. This paper presents and discusses criteria for delineating areas prone to flash flood and lahar hazards, which are localized along the usually dry (except for the rainy season) ravines and channels of the Río Chili and its tributaries that dissect the city. Our risk-evaluation study is based mostly on field surveys and mapping, but we also took into account quality and structural integrity of buildings, available socio-economic data, and information gained from interviews with risk-managers officials. In our evaluation of the vulnerability of various parts of the city, in addition to geological and physical parameters, we also took into account selected socio-economic parameters, such as the educational and poverty level of the population, unemployment figures, and population density. In addition, we utilized a criterion of the "isolation factor", based on distances to access emergency resources (hospitals, shelters or safety areas, and water) in each city block. By combining the hazard, vulnerability and exposure criteria, we produced detailed risk-zone maps at the city-block scale, covering the whole city of Arequipa and adjacent suburbs. Not surprisingly, these maps show that the areas at high risk coincide with blocks or districts with populations at low socio-economic levels. Inhabitants at greatest risk are the poor recent immigrants from rural areas who live in unauthorized settlements in the outskirts of the city in the upper parts of the valleys. Such settlements are highly exposed to natural hazards and have little access to vital resources. Our

Pharmacological characterization of human recombinant melatonin mt1 and MT2 receptors

PubMed Central

Browning, Christopher; Beresford, Isabel; Fraser, Neil; Giles, Heather

2000-01-01

We have pharmacologically characterized recombinant human mt1 and MT2 receptors, stably expressed in Chinese hamster ovary cells (CHO-mt1 and CHO-MT2), by measurement of [3H]-melatonin binding and forskolin-stimulated cyclic AMP (cAMP) production. [3H]-melatonin bound to mt1 and MT2 receptors with pKD values of 9.89 and 9.56 and Bmax values of 1.20 and 0.82 pmol mg−1 protein, respectively. Whilst most melatonin receptor agonists had similar affinities for mt1 and MT2 receptors, a number of putative antagonists had substantially higher affinities for MT2 receptors, including luzindole (11 fold), GR128107 (23 fold) and 4-P-PDOT (61 fold). In both CHO-mt1 and CHO-MT2 cells, melatonin inhibited forskolin-stimulated accumulation of cyclic AMP in a concentration-dependent manner (pIC50 9.53 and 9.74, respectively) causing 83 and 64% inhibition of cyclic AMP production at 100 nM, respectively. The potencies of a range of melatonin receptor agonists were determined. At MT2 receptors, melatonin, 2-iodomelatonin and 6-chloromelatonin were essentially equipotent, whilst at the mt1 receptor these agonists gave the rank order of potency of 2-iodomelatonin>melatonin>6-chloromelatonin. In both CHO-mt1 and CHO-MT2 cells, melatonin-induced inhibition of forskolin-stimulated cyclic AMP production was antagonized in a concentration-dependent manner by the melatonin receptor antagonist luzindole, with pA2 values of 5.75 and 7.64, respectively. Melatonin-mediated responses were abolished by pre-treatment of cells with pertussis toxin, consistent with activation of Gi/Go G-proteins. This is the first report of the use of [3H]-melatonin for the characterization of recombinant mt1 and MT2 receptors. Our results demonstrate that these receptor subtypes have distinct pharmacological profiles. PMID:10696085

Simulating Lahars Using A Rotating Drum

NASA Astrophysics Data System (ADS)

Neather, Adam; Lube, Gert; Jones, Jim; Cronin, Shane

2014-05-01

A large (0.5 m in diameter, 0.15 m wide) rotating drum is used to investigate the erosion and deposition mechanics of lahars. To systematically simulate the conditions occurring in natural mass flows our experimental setup differs from the common rotating drum employed in industrial/engineering studies. Natural materials with their typical friction properties are used, as opposed to the frequently employed spherical glass beads; the drum is completely water-proof, so solid/air and solid/liquid mixtures can be investigated; the drum velocity and acceleration can be precisely controlled using a software interface to a micro-controller, allowing for the study of steady, unsteady and intermediate flow regimes. The drum has a toughened glass door, allowing high-resolution, high-speed video recording of the material inside. Vector maps of the velocities involved in the flows are obtained using particle image velocimetry (PIV). The changes in velocity direction and/or magnitude are used to locate the primary internal boundaries between layers of opposite flow direction, as well as secondary interfaces between shear layers. A range of variables can be measured: thickness and number of layers; the curvature of the free surface; frequency of avalanching; position of the centre of mass of the material; and the velocity profiles of the flowing material. Experiments to date have focussed on dry materials, and have had a fill factor of approximately 0.3. Combining these measured variables allows us to derive additional data of interest, such as mass and momentum flux. It is these fluxes that we propose will allow insight into the erosion/deposition mechanics of a lahar. A number of conclusions can be drawn to date. A primary interface separates flowing and passive region (this interface has been identified in previous studies). As well as the primary interface, the flowing layer separates into individual shear layers, with individual erosion/deposition and flow histories. This

Preparing for Volcanic Hazards: An Examination of Lahar Knowledge, Risk Perception, and Preparedness around Mount Baker and Glacier Peak, WA

NASA Astrophysics Data System (ADS)

Corwin, K.; Brand, B. D.

2015-12-01

As the number of people living at risk from volcanic hazards in the U.S. Pacific Northwest continues to rise, so does the need for improved hazard science, mitigation, and response planning. The effectiveness of these efforts relies not only on scientists and policymakers, but on individuals and their risk perception and preparedness levels. This study examines the individual knowledge, perception, and preparedness of over 500 survey respondents living or working within the lahar zones of Mount Baker and Glacier Peak volcanoes. We (1) explore the common disconnect between accurate risk perception and adequate preparedness; (2) determine how participation in hazard response planning influences knowledge, risk perception, and preparedness; and (3) assess the effectiveness of current lahar hazard maps for public risk communication. Results indicate that a disconnect exists between perception and preparedness for the majority of respondents. While 82% of respondents accurately anticipate that future volcanic hazards will impact the Skagit Valley, this knowledge fails to motivate increased preparedness. A majority of respondents also feel "very responsible" for their own protection and provision of resources during a hazardous event (83%) and believe they have the knowledge and skills necessary to respond effectively to such an event (56%); however, many of these individuals still do not adequately prepare. When asked what barriers prevent them from preparing, respondents primarily cite a lack of knowledge about relevant local hazards. Results show that participation in response-related activities—a commonly recommended solution to this disconnect—minimally influences preparedness. Additionally, although local hazard maps successfully communicate the primary hazard—97% of respondents recognize the lahar hazard—many individuals incorrectly interpret other important facets of the maps. Those who participate in response-related activities fail to understand these

MT1 and MT2 Melatonin Receptors: A Therapeutic Perspective

PubMed Central

Liu, Jiabei; Clough, Shannon J.; Hutchinson, Anthony J.; Adamah-Biassi, Ekue B.; Popovska-Gorevski, Marina; Dubocovich, Margarita L.

2016-01-01

Melatonin, or 5-methoxy-N-acetyltryptamine, is synthesized and released by the pineal gland and locally in the retina following a circadian rhythm, with low levels during the day and elevated levels at night. Melatonin activates two high-affinity G protein–coupled receptors, termed MT1 and MT2, to exert beneficial actions in sleep and circadian abnormality, mood disorders, learning and memory, neuroprotection, drug abuse, and cancer. Progress in understanding the role of melatonin receptors in the modulation of sleep and circadian rhythms has led to the discovery of a novel class of melatonin agonists for treating insomnia, circadian rhythms, mood disorders, and cancer. This review describes the pharmacological properties of a slow-release melatonin preparation (i.e., Circadin®) and synthetic ligands (i.e., agomelatine, ramelteon, tasimelteon), with emphasis on identifying specific therapeutic effects mediated through MT1 and MT2 receptor activation. Discovery of selective ligands targeting the MT1 or the MT2 melatonin receptors may promote the development of novel and more efficacious therapeutic agents. PMID:26514204

Genome sequence of two members of the chloroaromatic-degrading MT community: Pseudomonas reinekei MT1 and Achromobacter xylosoxidans MT3.

PubMed

Gutierrez-Urrutia, Izabook; Miossec, Matthieu J; Valenzuela, Sandro L; Meneses, Claudio; Dos Santos, Vitor A P Martins; Castro-Nallar, Eduardo; Poblete-Castro, Ignacio

2018-06-10

We describe the genome sequence of Pseudomonas reinekei MT1 and Achromobacter xylosoxidans MT3, the most abundant members of a bacterial community capable of degrading chloroaromatic compounds. The MT1 genome contains open reading frames encoding enzymes responsible for the catabolism of chlorosalicylate, methylsalicylate, chlorophenols, phenol, benzoate, p-coumarate, phenylalanine, and phenylacetate. On the other hand, the MT3 strain genome possesses no ORFs to metabolize chlorosalicylates; instead the bacterium is capable of metabolizing nitro-phenolic and phenolic compounds, which can be used as the only carbon and energy source by MT3. We also confirmed that MT3 displays the genetic machinery for the metabolism of chlorocathecols and chloromuconates, where the latter are toxic compounds secreted by MT1 when degrading chlorosalicylates. Altogether, this work will advance our fundamental understanding of bacterial interactions. Copyright © 2018 Elsevier B.V. All rights reserved.

Snow cover correlation between Mt. Villarrica and Mt. Lliama in Chile

NASA Astrophysics Data System (ADS)

Kim, Jeong-Cheol; Park, Sung-Hwan; Jung, Hyung-Sup

2014-11-01

The Southern Volcanic Zone (SVZ) of Chile consists of many volcanoes, and all of the volcanoes are covered with snow at the top of mountain. Monitoring snow cover variations in these regions can give us a key parameter in order to understand the mechanisms of volcanic activity. In this study, we investigate on the volcanic activity and snow cover interaction from snow cover area mapping, snow-line extraction. The study areas cover Mt. Villarrica and Mt. Llaima, Chile. Both of them are most active volcanos in SVZ. Sixty Landsat TM and Landsat ETM+ images are used for observing snow cover variations of Mt. Villarrica and Mt. Llaima, spanning the 25 years from September 1986 to February 2011. Results show that snow cover area between volcanic activity and non-activity are largely changed from 42.84 km2 to 13.41 km2, temporarily decreased 79% at the Mt. Villarrica and from 28.98 km2 to 3.82 km2, temporarily decreased 87% at the Mt. Villarrica. The snow line elevation of snow cover retreated by approximately 260 m from 1,606m to 1,871 m at the Mt. Villarrica, approximately 266m from 1,741m to 2,007m at the Mt. Llaima. The results show that there are definitely correlations between snow cover and volcanic activity.

Swift snowmelt and floods (lahars) caused by great pyroclastic surge at Mount St Helens volcano, Washington, 18 May 1980

USGS Publications Warehouse

Waitt, R.B.

1989-01-01

The initial explosions at Mount St. Helens, Washington, on the moring of 18 May 1980 developed into a huge pyroclastic surge that generated catastrophic floods off the east and west flanks of the volcano. Near-source surge deposits on the east and west were lithic, sorted, lacking in accretionary lapilli and vesiculated ash, not plastered against upright obstacles, and hot enough to char wood - all attributes of dry pyroclastic surge. Material deposited at the surge base on steep slopes near the volcano transformed into high-concentration lithic pyroclastic flows whose deposits contain charred wood and other features indicating that these flows were hot and dry. Stratigraphy shows that even the tail of the surge had passed the east and west volcano flanks before the geomorphically distinct floods (lahars) arrived. This field evidence undermines hypotheses that the turbulent surge was itself wet and that its heavy components segregated out to transform directly into lahars. Nor is there evidence that meters-thick snow-slab avalanches intimately mixed with the surge to form the floods. The floods must have instead originated by swift snowmelt at the base of a hot and relatively dry turbulent surge. Impacting hot pyroclasts probably transferred downslope momentum to the snow surface and churned snow grains into the surge base. Melting snow and accumulating hot surge debris may have moved initially as thousands of small thin slushflows. As these flows removed the surface snow and pyroclasts, newly uncovered snow was partly melted by the turbulent surge base; this and accumulating hot surge debris in turn began flowing, a self-sustaining process feeding the initial flows. The flows thus grew swiftly over tens of seconds and united downslope into great slushy ejecta-laden sheetfloods. Gravity accelerated the floods to more than 100 km/h as they swept down and off the volcano flanks while the snow component melted to form great debris-rich floods (lahars) channeled into

Pathogenic role of mtDNA duplications in mitochondrial diseases associated with mtDNA deletions.

PubMed

Odoardi, Francesca; Rana, Michele; Broccolini, Aldobrando; Mirabella, Massimiliano; Modoni, Anna; D'Amico, Adele; Papacci, Manuela; Tonali, Pietro; Servidei, Serenella; Silvestri, Gabriella

2003-04-30

We estimated the frequency of multiple mtDNA rearrangements by Southern blot in 32 patients affected by mitochondrial disorders associated with single deletions in order to assess genotype-phenotype correlations and elucidate the pathogenic significance of mtDNA duplications. Muscle in situ hybridization studies were performed in patients showing mtDNA duplications at Southern blot. We found multiple rearrangements in 12/32 (37.5%) patients; in particular, mtDNA duplications were detected in 4/4 Kearns-Sayre syndrome (KSS), in 1 Pearson's syndrome, in 1/3 encephalomyopathies with progressive external ophthalmoplegia (PEO), and in 2/23 PEO. In situ studies documented an exclusive accumulation of deleted mtDNAs in cytochrome c oxidase negative fibers of patients with mtDNA duplications. The presence of mtDNA duplications significantly correlated with onset of symptoms before age 15 and occurrence of clinical multisystem involvement. Analysis of biochemical data documented a predominant reduction of complex III in patients without duplications compared to patients with mtDNA duplications. Our data indicate that multiple mtDNA rearrangements are detectable in a considerable proportion of patients with single deletions and that mtDNA duplications do not cause any oxidative impairment. They more likely play a pathogenic role in the determination of clinical expression of mitochondrial diseases associated with single mtDNA deletions, possibly generating deleted mtDNAs in embryonic tissues by homologous recombination. Copyright 2003 Wiley-Liss, Inc.

Identifying Alteration and Water on MT. Baker, WA with Geophysics: Implications for Volcanic Landslide Hazards

NASA Astrophysics Data System (ADS)

Finn, C.; Deszcz-Pan, M.; Bedrosian, P.; Minsley, B. J.

2016-12-01

Helicopter magnetic and electromagnetic (HEM) data, along with rock property measurements, local ground-based gravity, time domain electromagnetic (TEM) and nuclear magnetic resonance (NMR) data help identify alteration and water-saturated zones on Mount Baker, Washington. Hydrothermally altered rocks, particularly if water-saturated, can weaken volcanic edifices, increasing the potential for catastrophic sector collapses that can lead to far traveled and destructive debris flows. At Mount Baker volcano, collapses of hydrothermally altered rocks from the edifice have generated numerous debris flows that constitute their greatest volcanic hazards. Critical to quantifying this hazard is knowledge of the three-dimensional distribution of pervasively altered rock, shallow groundwater and ice that plays an important role in transforming debris avalanches to far traveled lahars. The helicopter geophysical data, combined with geological mapping and rock property measurements, indicate the presence of localized zones of less than 100 m thickness of water-saturated hydrothermally altered rock beneath Sherman Crater and the Dorr Fumarole Fields at Mt. Baker. New stochastic inversions of the HEM data indicate variations in resistivity in inferred perched aquifers—distinguishing between fresh and saline waters, possibly indicating the influence of nearby alteration and/or hydrothermal systems on water quality. The new stochastic results better resolve ice thickness than previous inversions, and also provide important estimates of uncertainty on ice thickness and other parameters. New gravity data will help constrain the thickness of the ice and alteration. Nuclear magnetic resonance data indicate that the hydrothermal clays contain 50% water with no evidence for water beneath the ice. The HEM data identify water-saturated fresh volcanic rocks from the surface to the detection limit ( 100 m) over the entire summit of Mt. Baker. Localized time domain EM soundings indicate that

Mount Baker lahars and debris flows, ancient, modern, and future

USGS Publications Warehouse

Tucker, David S; Scott, Kevin M.; Grossman, Eric E.; Linneman, Scott

2014-01-01

Holocene lahars and large debris flows (>106 m3) have left recognizable deposits in the Middle Fork Nooksack valley. A debris flow in 2013 resulting from a landslide in a Little Ice Age moraine had an estimated volume of 100,000 m3, yet affected turbidity for the entire length of the river, and produced a slug of sediment that is currently being reworked and remobilized in the river system. Deposits of smaller-volume debris flows, deposited as terraces in the upper valley, may be entirely eroded within a few years. Consequently, the geologic record of small debris flows such as those that occurred in 2013 is probably very fragmentary. Small debris flows may still have significant impacts on hydrology, biology, and human uses of rivers downstream. Impacts include the addition of waves of fine sediment to stream loads, scouring or burying salmon-spawning gravels, forcing unplanned and sudden closure of municipal water intakes, damaging or destroying trail crossings, extending river deltas into estuaries, and adding to silting of harbors near river mouths.

The MtDMI2-MtPUB2 Negative Feedback Loop Plays a Role in Nodulation Homeostasis1[OPEN

PubMed Central

Deng, Jie; Zhu, Fugui; Lu, Zheng

2018-01-01

DOES NOT MAKE INFECTION 2 (MtDMI2) is a Leu rich repeat-type receptor kinase required for signal transduction in the Medicago truncatula/Sinorhizobium meliloti symbiosis pathway. However, the mechanisms through which MtDMI2 participates in nodulation homeostasis are poorly understood. In this study, we identified MtPUB2—a novel plant U-box (PUB)–type E3 ligase—and showed that it interacts with MtDMI2. MtDMI2 and MtPUB2 accumulation were shown to be similar in various tissues. Roots of plants in which MtPUB2 was silenced by RNAi (MtPUB2-RNAi plants) exhibited impaired infection threads, fewer nodules, and shorter primary root lengths compared to those of control plants transformed with empty vector. Using liquid chromatography-tandem mass spectrometry, we showed that MtDMI2 phosphorylates MtPUB2 at Ser-316, Ser-421, and Thr-488 residues. When MtPUB2-RNAi plants were transformed with MtPUB2S421D, which mimics the phosphorylated state, MtDMI2 was persistently ubiquitinated and degraded by MtPUB2S421D, resulting in fewer nodules than observed in MtPUB2/MtPUB2-RNAi-complemented plants. However, MtPUB2S421A/MtPUB2-RNAi-complemented plants showed no MtPUB2 ubiquitination activity, and their nodulation phenotype was similar to that of MtPUB2-RNAi plants transformed with empty vector. Further studies demonstrated that these proteins form a negative feedback loop of the prey (MtDMI2)-predator (MtPUB2) type. Our results suggest that the MtDMI2-MtPUB2 negative feedback loop, which displays crosstalk with the long-distance autoregulation of nodulation via MtNIN, plays an important role in nodulation homeostasis. PMID:29440269

Laharz_py: GIS tools for automated mapping of lahar inundation hazard zones

USGS Publications Warehouse

Schilling, Steve P.

2014-01-01

Laharz_py is written in the Python programming language as a suite of tools for use in ArcMap Geographic Information System (GIS). Primarily, Laharz_py is a computational model that uses statistical descriptions of areas inundated by past mass-flow events to forecast areas likely to be inundated by hypothetical future events. The forecasts use physically motivated and statistically calibrated power-law equations that each has a form A = cV2/3, relating mass-flow volume (V) to planimetric or cross-sectional areas (A) inundated by an average flow as it descends a given drainage. Calibration of the equations utilizes logarithmic transformation and linear regression to determine the best-fit values of c. The software uses values of V, an algorithm for idenitifying mass-flow source locations, and digital elevation models of topography to portray forecast hazard zones for lahars, debris flows, or rock avalanches on maps. Laharz_py offers two methods to construct areas of potential inundation for lahars: (1) Selection of a range of plausible V values results in a set of nested hazard zones showing areas likely to be inundated by a range of hypothetical flows; and (2) The user selects a single volume and a confidence interval for the prediction. In either case, Laharz_py calculates the mean expected A and B value from each user-selected value of V. However, for the second case, a single value of V yields two additional results representing the upper and lower values of the confidence interval of prediction. Calculation of these two bounding predictions require the statistically calibrated prediction equations, a user-specified level of confidence, and t-distribution statistics to calculate the standard error of regression, standard error of the mean, and standard error of prediction. The portrayal of results from these two methods on maps compares the range of inundation areas due to prediction uncertainties with uncertainties in selection of V values. The Open-File Report

75 FR 43556 - TA-W-73,381, MT Rail Link, Inc., Missoula, MT; TA-W-73,381A, Billings, MT; TA-W-73,381B, Laurel...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-26

... DEPARTMENT OF LABOR Employment and Training Administration TA-W-73,381, MT Rail Link, Inc., Missoula, MT; TA-W-73,381A, Billings, MT; TA-W-73,381B, Laurel, MT; TA-W-73,381C, Livingston, MT; TA-W-73... Helena, Montana. The amended notice applicable to TA-W-73,381 is hereby issued as follows: All workers of...

Contrasting expression of membrane metalloproteinases, MT1-MMP and MT3-MMP, suggests distinct functions in skeletal development.

PubMed

Yang, Maozhou; Zhang, Bingbing; Zhang, Liang; Gibson, Gary

2008-07-01

Membrane-type 1 matrix metalloproteinase (MT1-MMP) is the most ubiquitous and widely studied of the membrane-type metalloproteinases (MT-MMPs). It was thus surprising to find no published data on chicken MT1-MMP. We report here the characterization of the chicken gene. Its low sequence identity with the MT1-MMP genes of other species, high GC content, and divergent catalytic domain explains the absence of data and our difficulties in characterizing the gene. The absence of structural features in the chicken gene that have been suggested to be critical for the activation of MMP-2 by MT1-MMP; for the effect of MT1-MMP on cell migration and for the recycling of MT1-MMP suggest these features are either not essential or that MT1-MMP does not perform these functions in chickens. Comparison of the expression of chicken MT1-MMP with MT3-MMP and with MMP-2 and MMP-13 has confirmed the previously recognized co-expression of MT1-MMP with MMP-2 and MMP-13 in fibrous and vascular tissues, particularly those surrounding the developing long bones in other species. By contrast, MT3-MMP expression differs markedly from that of MT1-MMP and of both MMP-2 and MMP-13. MT3-MMP is expressed by chondrocytes of the developing articular surface. Similar expression patterns of this group of MT-MMPs and MMPs have been observed in mouse embryos and suggest distinct and specific functions for MT1-MMP and MT3-MMP in skeletal development.

Burial of Emperor Augustus' villa at Somma Vesuviana (Italy) by post-79 AD Vesuvius eruptions and reworked (lahars and stream flow) deposits

NASA Astrophysics Data System (ADS)

Perrotta, Annamaria; Scarpati, Claudio; Luongo, Giuseppe; Aoyagi, Masanori

2006-11-01

A new archaeological site of Roman Age has been recently found engulfed in the products of Vesuvius activity at Somma Vesuviana, on the northern flank of the Somma-Vesuvius, 5 km from the vent. A 9 m deep, 30 by 35 m trench has revealed a monumental edifice tentatively attributed to the Emperor Augustus. Different than Pompeii and Herculaneum sites which were completely buried in the catastrophic eruption of 79 AD, this huge roman villa survived the effects of the 79 AD plinian eruption as suggested by stratigraphic and geochronologic data. It was later completely engulfed in the products of numerous explosive volcanic eruptions ranging from 472 AD to 1631 AD, which were separated by reworked material and paleosols. The exposed burial sequence is comprised of seven stratigraphic units. Four units are composed exclusively of pyroclastic products each emplaced during a unique explosive event. Two units are composed of volcaniclastic material (stream flow and lahars) emplaced during quiescent periods of the volcano. Finally, one unit is composed of both pyroclastic and volcaniclastic deposits. One of the more relevant volcanological results of this study is the detailed reconstruction of the destructive events that buried the Emperor Augustus' villa. Stratigraphic evidence shows the absence of any deposit associated with the 79 AD eruption at this site and that the building was extensively damaged (sacked) before it was engulfed by the products of subsequent volcanic eruptions and lahars. The products of the 472 AD eruption lie directly on the roman structures. They consist of scoria fall layers intercalated with massive and stratified pyroclastic density current deposits that caused limited damage to the structure. The impact on the building of penecontemporaneous lahars was more important; these caused the collapse of some structures. The remaining part of the building was subsequently entombed by the products of explosive eruptions (e.g. 512/536 eruption, 1631

Interface Symbiotic Membrane Formation in Root Nodules of Medicago truncatula: the Role of Synaptotagmins MtSyt1, MtSyt2 and MtSyt3

PubMed Central

Gavrin, Aleksandr; Kulikova, Olga; Bisseling, Ton; Fedorova, Elena E.

2017-01-01

Symbiotic bacteria (rhizobia) are maintained and conditioned to fix atmospheric nitrogen in infected cells of legume root nodules. Rhizobia are confined to the asymmetrical protrusions of plasma membrane (PM): infection threads (IT), cell wall-free unwalled droplets and symbiosomes. These compartments rapidly increase in surface and volume due to the microsymbiont expansion, and remarkably, the membrane resources of the host cells are targeted to interface membrane quite precisely. We hypothesized that the change in the membrane tension around the expanding microsymbionts creates a vector for membrane traffic toward the symbiotic interface. To test this hypothesis, we selected calcium sensors from the group of synaptotagmins: MtSyt1, Medicago truncatula homolog of AtSYT1 from Arabidopsis thaliana known to be involved in membrane repair, and two other homologs expressed in root nodules: MtSyt2 and MtSyt3. Here we show that MtSyt1, MtSyt2, and MtSyt3 are expressed in the expanding cells of the meristem, zone of infection and proximal cell layers of zone of nitrogen fixation (MtSyt1, MtSyt3). All three GFP-tagged proteins delineate the interface membrane of IT and unwalled droplets and create a subcompartments of PM surrounding these structures. The localization of MtSyt1 by EM immunogold labeling has shown the signal on symbiosome membrane and endoplasmic reticulum (ER). To specify the role of synaptotagmins in interface membrane formation, we compared the localization of MtSyt1, MtSyt3 and exocyst subunit EXO70i, involved in the tethering of post-Golgi secretory vesicles and operational in tip growth. The localization of EXO70i in root nodules and arbusculated roots was strictly associated with the tips of IT and the tips of arbuscular fine branches, but the distribution of synaptotagmins on membrane subcompartments was broader and includes lateral parts of IT, the membrane of unwalled droplets as well as the symbiosomes. The double silencing of synaptotagmins

mtDNA recombination in a natural population.

PubMed

Saville, B J; Kohli, Y; Anderson, J B

1998-02-03

Variation in mtDNA has been used extensively to draw inferences in phylogenetics and population biology. In the majority of eukaryotes investigated, transmission of mtDNA is uniparental and clonal, with genotypic diversity arising from mutation alone. In other eukaryotes, the transmission of mtDNA is biparental or primarily uniparental with the possibility of "leakage" from the minority parent. In these cases, heteroplasmy carries the potential for recombination between mtDNAs of different descent. In fungi, such mtDNA recombination has long been documented but only in laboratory experiments and only under conditions in which heteroplasmy is ensured. Despite this experimental evidence, mtDNA recombination has not been to our knowledge documented in a natural population. Because evidence from natural populations is prerequisite to understanding the evolutionary impact of mtDNA recombination, we investigated the possibility of mtDNA recombination in an organism with the demonstrated potential for heteroplasmy in laboratory matings. Using nucleotide sequence data, we report here that the genotypic structure of mtDNA in a natural population of the basidiomycete fungus Armillaria gallica is inconsistent with purely clonal mtDNA evolution and is fully consistent with mtDNA recombination.

Linear mtDNA fragments and unusual mtDNA rearrangements associated with pathological deficiency of MGME1 exonuclease

PubMed Central

Nicholls, Thomas J.; Zsurka, Gábor; Peeva, Viktoriya; Schöler, Susanne; Szczesny, Roman J.; Cysewski, Dominik; Reyes, Aurelio; Kornblum, Cornelia; Sciacco, Monica; Moggio, Maurizio; Dziembowski, Andrzej; Kunz, Wolfram S.; Minczuk, Michal

2014-01-01

MGME1, also known as Ddk1 or C20orf72, is a mitochondrial exonuclease found to be involved in the processing of mitochondrial DNA (mtDNA) during replication. Here, we present detailed insights on the role of MGME1 in mtDNA maintenance. Upon loss of MGME1, elongated 7S DNA species accumulate owing to incomplete processing of 5′ ends. Moreover, an 11-kb linear mtDNA fragment spanning the entire major arc of the mitochondrial genome is generated. In contrast to control cells, where linear mtDNA molecules are detectable only after nuclease S1 treatment, the 11-kb fragment persists in MGME1-deficient cells. In parallel, we observed characteristic mtDNA duplications in the absence of MGME1. The fact that the breakpoints of these mtDNA rearrangements do not correspond to either classical deletions or the ends of the linear 11-kb fragment points to a role of MGME1 in processing mtDNA ends, possibly enabling their repair by homologous recombination. In agreement with its functional involvement in mtDNA maintenance, we show that MGME1 interacts with the mitochondrial replicase PolgA, suggesting that it is a constituent of the mitochondrial replisome, to which it provides an additional exonuclease activity. Thus, our results support the viewpoint that MGME1-mediated mtDNA processing is essential for faithful mitochondrial genome replication and might be required for intramolecular recombination of mtDNA. PMID:24986917

Volcanic Risk Perception and Preparedness in Communities within the Mount Baker and Glacier Peak Lahar Hazard Zones

NASA Astrophysics Data System (ADS)

Corwin, K.; Brand, B. D.

2014-12-01

A community's ability to effectively respond to and recover from natural hazards depends on both the physical characteristics of the hazard and the community's inherent resilience. Resilience is shaped by a number of factors including the residents' perception of and preparedness for a natural hazard as well as the level of institutional preparedness. This study examines perception of and preparedness for lahar hazards from Mount Baker and Glacier Peak in Washington's Skagit Valley. Through an online survey, this study isolates the influence of specific variables (e.g., knowledge, past experience, scientific background, trust in various information sources, occupation, self-efficacy, sense of community) on risk perception and explores reasons behind the frequent disconnect between perception and preparedness. We anticipate that individuals with more extensive education in the sciences, especially geology or earth science, foster greater trust in scientists and a more accurate knowledge, understanding, and perception of the volcanic hazards in their community. Additionally, little research exists examining the extent to which first responders and leaders in response-related institutions prepare on a personal level. Since these individuals work toward community preparedness professionally, we hypothesize that they will be more prepared at home than members of the general public. Finally, the Skagit Valley has a significant history of flooding. We expect that the need to respond to and recover from frequent flooding creates a community with an inherently higher level of preparedness for other hazards such as lahars. The results of this study will contribute to the understanding of what controls risk perception and the interplay between perception and preparedness. At a broader level, this study provides local and state-level emergency managers information to evaluate and improve response capabilities and communication with the public and key institutions in order to

Earthworm Lumbricus rubellus MT-2: Metal Binding and Protein Folding of a True Cadmium-MT.

PubMed

Kowald, Gregory R; Stürzenbaum, Stephen R; Blindauer, Claudia A

2016-01-05

Earthworms express, as most animals, metallothioneins (MTs)-small, cysteine-rich proteins that bind d(10) metal ions (Zn(II), Cd(II), or Cu(I)) in clusters. Three MT homologues are known for Lumbricus rubellus, the common red earthworm, one of which, wMT-2, is strongly induced by exposure of worms to cadmium. This study concerns composition, metal binding affinity and metal-dependent protein folding of wMT-2 expressed recombinantly and purified in the presence of Cd(II) and Zn(II). Crucially, whilst a single Cd₇wMT-2 species was isolated from wMT-2-expressing E. coli cultures supplemented with Cd(II), expressions in the presence of Zn(II) yielded mixtures. The average affinities of wMT-2 determined for either Cd(II) or Zn(II) are both within normal ranges for MTs; hence, differential behaviour cannot be explained on the basis of overall affinity. Therefore, the protein folding properties of Cd- and Zn-wMT-2 were compared by ¹H NMR spectroscopy. This comparison revealed that the protein fold is better defined in the presence of cadmium than in the presence of zinc. These differences in folding and dynamics may be at the root of the differential behaviour of the cadmium- and zinc-bound protein in vitro, and may ultimately also help in distinguishing zinc and cadmium in the earthworm in vivo.

‘Column on column’ structures as indicators of lava/ice interaction, Ruapehu andesite volcano, New Zealand

NASA Astrophysics Data System (ADS)

Spörli, K. B.; Rowland, J. V.

2006-10-01

Lava flows of the Mangawhero Formation (ca. 15-60 ka) on Ruapehu volcano erupted during the last glaciation. In a distal flow lobe at Tukino, on the east side of the mountain, small secondary columns (10-20 cm thick) have formed on the sides of large, rectangular, primary (0.5-3 m thick) cooling columns. Thick (10 m+) zones of such small columns form a lateral and basal outer rind of the lobe. As they do not mark glassy zones of quenching, these secondary columns are interpreted as being formed by a second cooling event at temperatures below the boundary between the low creep and elastic regimes (˜ 600 °C) by rapid influx of copious amounts of water. Temperature drops deduced from extensional strains of the two sets of columns were used to gauge the viability of such a two-stage process. Absence of reliable data on andesite contraction coefficients was overcome by using a sliding scale to assess a large range of values. The estimates indicate that two-stage chilling is feasible. After flowing across relatively ice-poor terrain, the lava flow must have interacted with a valley glacier that provided water for further chilling the already formed primary columns and formation of the outer rind small columns. Given this evidence for lava/ice interaction, it is likely that prominent, thick flows elsewhere in the Mangawhero Formation may have been constrained to their ridge-top locations by ice conditions similar to those described by Lescinsky and Sisson [Lescinsky, D.T., Sisson, T.W., 1998. Ridge-forming, ice-bounded lava flows at Mount Rainier, Washington. Geology, 26, 351-354].

Nonconscious memory for motion activates MT+.

PubMed

Thakral, Preston P; Slotnick, Scott D

2014-11-12

Extrastriate region MT+ is widely thought to reflect conscious motion processing. The primary aim of the present functional MRI study was to assess whether MT+ is activated during nonconscious memory for motion. During the encoding phase, moving and stationary abstract shapes were presented to the left or right of fixation. During the retrieval phase, the same shapes were presented at fixation and participants classified each shape as 'moving-left', 'moving-right', 'stationary-left', or 'stationary-right'. The contrast of moving>stationary shapes at encoding was used to identify the location of MT+. Event-related activity was then extracted from MT+ within each hemisphere. MT+ activity was significantly greater for moving-misses than for stationary-misses, which indicates that nonconscious memory for motion activates MT+. Furthermore, nonconscious memory activity (moving-misses) had an earlier temporal onset than conscious memory activity (moving-hits). The present results are the first, to our knowledge, to demonstrate that MT+ is associated with nonconscious motion processing. Therefore, activity in this region or in other visual-sensory regions should not be assumed to reflect conscious processing.

mtDNA lineage analysis of mouse L-cell lines reveals the accumulation of multiple mtDNA mutants and intermolecular recombination

PubMed Central

Fan, Weiwei; Lin, Chun Shi; Potluri, Prasanth; Procaccio, Vincent; Wallace, Douglas C.

2012-01-01

The role of mitochondrial DNA (mtDNA) mutations and mtDNA recombination in cancer cell proliferation and developmental biology remains controversial. While analyzing the mtDNAs of several mouse L cell lines, we discovered that every cell line harbored multiple mtDNA mutants. These included four missense mutations, two frameshift mutations, and one tRNA homopolymer expansion. The LA9 cell lines lacked wild-type mtDNAs but harbored a heteroplasmic mixture of mtDNAs, each with a different combination of these variants. We isolated each of the mtDNAs in a separate cybrid cell line. This permitted determination of the linkage phase of each mtDNA and its physiological characteristics. All of the polypeptide mutations inhibited their oxidative phosphorylation (OXPHOS) complexes. However, they also increased mitochondrial reactive oxygen species (ROS) production, and the level of ROS production was proportional to the cellular proliferation rate. By comparing the mtDNA haplotypes of the different cell lines, we were able to reconstruct the mtDNA mutational history of the L–L929 cell line. This revealed that every heteroplasmic L-cell line harbored a mtDNA that had been generated by intracellular mtDNA homologous recombination. Therefore, deleterious mtDNA mutations that increase ROS production can provide a proliferative advantage to cancer or stem cells, and optimal combinations of mutant loci can be generated through recombination. PMID:22345519

The Role of Community-Based Organization in Disaster Response at Mt. Sinabung

NASA Astrophysics Data System (ADS)

Wulandari, Y.; Sagala, S. A. H.; Sullivan, G. B.

2018-05-01

In August 2010, Mt. Sinabung in North Sumatera erupted for the very first time in 400 years; until that moment the volcano had been declared as dormant. In contrast to the communities living around Mt. Merapi in Java, the Mt. Sinabung communities had little to no preparation when faced with the sudden volcanic eruption. The Sinabung eruption caused disturbances as it ruined the farmlands and community’s sources of livelihood, especially since most of the community members are farmers. Most of the time, these farmlands are located not far from their house, so displacing them means moving them away from their main source of income. This makes some of the displaced keep moving back to their old villages to farm even though they are putting themselves in danger by doing so. This condition motivated the community to initiate Beidar, an organization to monitor volcanic activities and give out early warnings to villagers nearby and within the hazard zone to evacuate. This paper will study Beidar’s involvement with the community and the government, how they operate, and how they impact the community members living near the volcano. This data used in this study are primarily from interviews with Beidar members and organizers, volcanic monitoring posts, and the local disaster management. A thematic analysis of the interviews shows the history of Beidar’s development as an organization proudly independent of the government; the “recruitment” of members; the important roles in the community including mediating between government and other local organizations (e.g., volcano monitoring station); specific monitoring; communication and evacuation activities (e.g., including search activities after eruptions and lahars); contacts and sharing of experience with similar groups in Indonesia; and identifying the limits of their influence in preventing local people from returning to the red zone. This research concludes that Beidar was officially acknowledged as an

Investigating crater lake warming using ASTER thermal imagery: Case studies at Ruapehu, Poás, Kawah Ijen, and Copahué Volcanoes

NASA Astrophysics Data System (ADS)

Trunk, Laura; Bernard, Alain

2008-12-01

A two-channel or split-window algorithm designed to correct for atmospheric conditions was applied to thermal images taken by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) of Lake Yugama on Kusatsu-Shirane volcano in Japan in order to measure the temperature of its crater lake. These temperature calculations were validated using lake water temperatures that were collected on the ground. Overall, the agreement between the temperatures calculated using the split-window method and ground truth is quite good, typically ± 1.5 °C for cloud-free images. Data from fieldwork undertaken in the summer of 2004 at Kusatsu-Shirane allow a comparison of ground-truth data with the radiant temperatures measured using ASTER imagery. Further images were analyzed of Ruapehu, Poás, Kawah Ijen, and Copahué volcanoes to acquire time-series of lake temperatures. A total of 64 images of these 4 volcanoes covering a wide range of geographical locations and climates were analyzed. Results of the split-window algorithm applied to ASTER images are reliable for monitoring thermal changes in active volcanic lakes. These temperature data, when considered in conjunction with traditional volcano monitoring techniques, lead to a better understanding of whether and how thermal changes in crater lakes aid in eruption forecasting.

Barley metallothioneins: MT3 and MT4 are localized in the grain aleurone layer and show differential zinc binding.

PubMed

Hegelund, Josefine Nymark; Schiller, Michaela; Kichey, Thomas; Hansen, Thomas Hesselhøj; Pedas, Pai; Husted, Søren; Schjoerring, Jan Kofod

2012-07-01

Metallothioneins (MTs) are low-molecular-weight, cysteine-rich proteins believed to play a role in cytosolic zinc (Zn) and copper (Cu) homeostasis. However, evidence for the functional properties of MTs has been hampered by methodological problems in the isolation and characterization of the proteins. Here, we document that barley (Hordeum vulgare) MT3 and MT4 proteins exist in planta and that they differ in tissue localization as well as in metal coordination chemistry. Combined transcriptional and histological analyses showed temporal and spatial correlations between transcript levels and protein abundance during grain development. MT3 was present in tissues of both maternal and filial origin throughout grain filling. In contrast, MT4 was confined to the embryo and aleurone layer, where it appeared during tissue specialization and remained until maturity. Using state-of-the-art speciation analysis by size-exclusion chromatography inductively coupled plasma mass spectrometry and electrospray ionization time-of-flight mass spectrometry on recombinant MT3 and MT4, their specificity and capacity for metal ion binding were quantified, showing a strong preferential Zn binding relative to Cu and cadmium (Cd) in MT4, which was not the case for MT3. When complementary DNAs from barley MTs were expressed in Cu- or Cd-sensitive yeast mutants, MT3 provided a much stronger complementation than did MT4. We conclude that MT3 may play a housekeeping role in metal homeostasis, while MT4 may function in Zn storage in developing and mature grains. The localization of MT4 and its discrimination against Cd make it an ideal candidate for future biofortification strategies directed toward increasing food and feed Zn concentrations.

Stratigraphic And Lithofacies Study Of Distal Rain-Triggered Lahars: The Case Of West Coast Of Ecuador

NASA Astrophysics Data System (ADS)

Mulas, M.; Chunga, K.; Peña Carpio, E.; Falquez Torres, D. A.; Alcivar, R., Sr.; Lopez Coronel, M. C.

2015-12-01

The central zone of the coast of Ecuador at the north of Manabí Province, on the area comprised between Salango and Jama communities, is characterized by the presence of whitish to grey, centimeters to meters thick, consolidated to loose distal ash deposits. Recent archeological studies on Valdivia (3500 BC) and Manteña (800-1500 AC - Harris et al. 2004) civilizations remains link this deposits with the intense eruptive phases that afflicted Ecuador 700-900 years ago (Usselman, 2006). Stratigraphic evidences and bibliographic datations of paleosols (Estrada, 1962; Mothes and Hall, 2008), allowed to estimate that these deposits are linked with the 800 BP eruption of Quilotoa and the following eruptions of Cotopaxi. According to the Smith and Lowe classification (1991), the deposits outcropping on the coast (located at a distance greater than 160 km from the volcanic vents), varied from whitish to grey, loose to weakly consolidated, massive to weakly stratified, centimeters to meters thick, coarse to fine ash matrix layers (diluite streamflow facies) to massive, large angular to sub-rounded siltitic blocks-rich and coarse to medium ash matrix deposits (debris flow facies). These types of lithofacies are associated to a rain-triggered lahar (De Belizal et al., 2013). The presence in some stratigraphic sections of sharp contacts, laminated layers of very fine ash, and also cm-thick sand and silt layers between the ash beds of the same deposits permit to understand that the different pulses were generated in short periods and after a long period. Structures like water pipes imply that the lahar went into the sea (Schneider, 2004), and allow the reconstruction of the paleotopographic condition during the emplacement of these deposits. This study focuses on the characterization of these types of deposits, permit to understand the kind of risk that may affect the towns located on the coast of Ecuador after VEI 4 to 6 eruptions on short time and within years.

The enormous Chillos Valley Lahar: An ash-flow-generated debris flow from Cotopaxi Volcano, Ecuador

USGS Publications Warehouse

Mothes, P.A.; Hall, M.L.; Janda, R.J.

1998-01-01

The Chillos Valley Lahar (CVL), the largest Holocene debris flow in area and volume as yet recognized in the northern Andes, formed on Cotopaxi volcano's north and northeast slopes and descended river systems that took it 326 km north-northwest to the Pacific Ocean and 130+ km east into the Amazon basin. In the Chillos Valley, 40 km downstream from the volcano, depths of 80-160 m and valley cross sections up to 337000m2 are observed, implying peak flow discharges of 2.6-6.0 million m3/s. The overall volume of the CVL is estimated to be ???3.8 km3. The CVL was generated approximately 4500 years BP by a rhyolitic ash flow that followed a small sector collapse on the north and northeast sides of Cotopaxi, which melted part of the volcano's icecap and transformed rapidly into the debris flow. The ash flow and resulting CVL have identical components, except for foreign fragments picked up along the flow path. Juvenile materials, including vitric ash, crystals, and pumice, comprise 80-90% of the lahar's deposit, whereas rhyolitic, dacitic, and andesitic lithics make up the remainder. The sand-size fraction and the 2- to 10-mm fraction together dominate the deposit, constituting ???63 and ???15 wt.% of the matrix, respectively, whereas the silt-size fraction averages less than ???10 wt.% and the clay-size fraction less than 0.5 wt.%. Along the 326-km runout, these particle-size fractions vary little, as does the sorting coefficient (average = 2.6). There is no tendency toward grading or improved sorting. Limited bulking is recognized. The CVL was an enormous non-cohesive debris flow, notable for its ash-flow origin and immense volume and peak discharge which gave it characteristics and a behavior akin to large cohesive mudflows. Significantly, then, ash-flow-generated debris flows can also achieve large volumes and cover great areas; thus, they can conceivably affect large populated regions far from their source. Especially dangerous, therefore, are snowclad volcanoes

Analysis of European mtDNAs for recombination.

PubMed

Elson, J L; Andrews, R M; Chinnery, P F; Lightowlers, R N; Turnbull, D M; Howell, N

2001-01-01

The standard paradigm postulates that the human mitochondrial genome (mtDNA) is strictly maternally inherited and that, consequently, mtDNA lineages are clonal. As a result of mtDNA clonality, phylogenetic and population genetic analyses should therefore be free of the complexities imposed by biparental recombination. The use of mtDNA in analyses of human molecular evolution is contingent, in fact, on clonality, which is also a condition that is critical both for forensic studies and for understanding the transmission of pathogenic mtDNA mutations within families. This paradigm, however, has been challenged recently by Eyre-Walker and colleagues. Using two different tests, they have concluded that recombination has contributed to the distribution of mtDNA polymorphisms within the human population. We have assembled a database that comprises the complete sequences of 64 European and 2 African mtDNAs. When this set of sequences was analyzed using any of three measures of linkage disequilibrium, one of the tests of Eyre-Walker and colleagues, there was no evidence for mtDNA recombination. When their test for excess homoplasies was applied to our set of sequences, only a slight excess of homoplasies was observed. We discuss possible reasons that our results differ from those of Eyre-Walker and colleagues. When we take the various results together, our conclusion is that mtDNA recombination has not been sufficiently frequent during human evolution to overturn the standard paradigm.

Idiosyncrasies of volcanic sulfur viscosity and the triggering of unheralded volcanic eruptions

NASA Astrophysics Data System (ADS)

Scolamacchia, Teresa; Cronin, Shane

2016-03-01

Unheralded "blue-sky" eruptions from dormant volcanoes cause serious fatalities, such as at Mt. Ontake (Japan) on 27 September 2014. Could these events result from magmatic gas being trapped within hydrothermal system aquifers by elemental sulfur (Se) clogging pores, due to sharp increases in its viscosity when heated above 159oC? This mechanism was thought to prime unheralded eruptions at Mt. Ruapehu in New Zealand. Impurities in sulfur (As, Te, Se) are known to modify S-viscosity and industry experiments showed that organic compounds, H2S, and halogens dramatically influence Se viscosity under typical hydrothermal heating/cooling rates and temperature thresholds. However, the effects of complex sulfur compositions are currently ignored at volcanoes, despite its near ubiquity in long-lived volcano-hydrothermal systems. Models of impure S behavior must be urgently formulated to detect pre-eruptive warning signs before the next "blue-sky" eruption

Phylogenetic Network for European mtDNA

PubMed Central

Finnilä, Saara; Lehtonen, Mervi S.; Majamaa, Kari

2001-01-01

The sequence in the first hypervariable segment (HVS-I) of the control region has been used as a source of evolutionary information in most phylogenetic analyses of mtDNA. Population genetic inference would benefit from a better understanding of the variation in the mtDNA coding region, but, thus far, complete mtDNA sequences have been rare. We determined the nucleotide sequence in the coding region of mtDNA from 121 Finns, by conformation-sensitive gel electrophoresis and subsequent sequencing and by direct sequencing of the D loop. Furthermore, 71 sequences from our previous reports were included, so that the samples represented all the mtDNA haplogroups present in the Finnish population. We found a total of 297 variable sites in the coding region, which allowed the compilation of unambiguous phylogenetic networks. The D loop harbored 104 variable sites, and, in most cases, these could be localized within the coding-region networks, without discrepancies. Interestingly, many homoplasies were detected in the coding region. Nucleotide variation in the rRNA and tRNA genes was 6%, and that in the third nucleotide positions of structural genes amounted to 22% of that in the HVS-I. The complete networks enabled the relationships between the mtDNA haplogroups to be analyzed. Phylogenetic networks based on the entire coding-region sequence in mtDNA provide a rich source for further population genetic studies, and complete sequences make it easier to differentiate between disease-causing mutations and rare polymorphisms. PMID:11349229

METHYLATION OF ARSENIC BY RECOMBINANT HUMAN AS3MT/287M AND AS3MT/287T POLYMORPHS

EPA Science Inventory

Arsenic (+3 oxidation state) methyltransferase (AS3MT) is the key enzyme in the pathway for methylation of inorganic arsenic (iAs). AS3MT polymorphism is, in part, responsible for interindividual differences in iAs metabolism. AS3MT/M287T polymorphism that is found in ~ 10% of C...

Keeping mtDNA in Shape between Generations

PubMed Central

Stewart, James B.; Larsson, Nils-Göran

2014-01-01

Since the unexpected discovery that mitochondria contain their own distinct DNA molecules, studies of the mitochondrial DNA (mtDNA) have yielded many surprises. In animals, transmission of the mtDNA genome is explicitly non-Mendelian, with a very high number of genome copies being inherited from the mother after a drastic bottleneck. Recent work has begun to uncover the molecular details of this unusual mode of transmission. Many surprising variations in animal mitochondrial biology are known; however, a series of recent studies have identified a core of evolutionarily conserved mechanisms relating to mtDNA inheritance, e.g., mtDNA bottlenecks during germ cell development, selection against specific mtDNA mutation types during maternal transmission, and targeted destruction of sperm mitochondria. In this review, we outline recent literature on the transmission of mtDNA in animals and highlight the implications for human health and ageing. PMID:25299061

Widespread recombination in published animal mtDNA sequences.

PubMed

Tsaousis, A D; Martin, D P; Ladoukakis, E D; Posada, D; Zouros, E

2005-04-01

Mitochondrial DNA (mtDNA) recombination has been observed in several animal species, but there are doubts as to whether it is common or only occurs under special circumstances. Animal mtDNA sequences retrieved from public databases were unambiguously aligned and rigorously tested for evidence of recombination. At least 30 recombination events were detected among 186 alignments examined. Recombinant sequences were found in invertebrates and vertebrates, including primates. It appears that mtDNA recombination may occur regularly in the animal cell but rarely produces new haplotypes because of homoplasmy. Common animal mtDNA recombination would necessitate a reexamination of phylogenetic and biohistorical inference based on the assumption of clonal mtDNA transmission. Recombination may also have an important role in producing and purging mtDNA mutations and thus in mtDNA-based diseases and senescence.

Eruption-related lahars and sedimentation response downstream of Mount Hood: Field guide to volcaniclastic deposits along the Sandy River, Oregon

USGS Publications Warehouse

Pierson, Tom C.; Scott, William E.; Vallance, James W.; Pringle, Patrick T.; O'Connor, Jim; Dorsey, Rebecca; Madin, Ian

2009-01-01

Late Holocene dome-building eruptions at Mount Hood during the Timberline and Old Maid eruptive periods resulted in numerous dome-collapse pyroclastic flows and lahars that moved large volumes of volcaniclastic sediment into temporary storage in headwater canyons of the Sandy River. During each eruptive period, accelerated sediment loading to the river through erosion and remobilization of volcanic fragmental debris resulted in very high sediment-transport rates in the Sandy River during rain- and snowmelt-induced floods. Large sediment loads in excess of the river's transport capacity led to channel aggradation, channel widening, and change to a braided channel form in the lowermost reach of the river, between 61 and 87 km downstream from the volcano. The post-eruption sediment load moved as a broad bed-material wave, which in the case of the Old Maid eruption took ~2 decades to crest 83 km downstream. Maximum post-eruption aggradation levels of at least 28 and 23 m were achieved in response to Timberline and Old Maid eruptions. In each case, downstream aggradation cycles were initiated by lahars, but the bulk of the aggradation was achieved by fluvial sediment transport and deposition. When the high rates of sediment supply began to diminish, the river degraded, incising the channel fills and forming progressively lower sets of degradational terraces. A variety of debris-flow, hyperconcentrated-flow, and fluvial (upper and lower flow regime) deposits record the downstream passage of the sediment waves that were initiated by these eruptions. The deposits also presage a hazard that may be faced by communities along the Sandy River when volcanic activity at Mount Hood resumes.

44 CFR 15.3 - Access to Mt. Weather.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 44 Emergency Management and Assistance 1 2013-10-01 2013-10-01 false Access to Mt. Weather. 15.3... HOMELAND SECURITY GENERAL CONDUCT AT THE MT. WEATHER EMERGENCY ASSISTANCE CENTER AND AT THE NATIONAL EMERGENCY TRAINING CENTER § 15.3 Access to Mt. Weather. Mt. Weather contains classified material and areas...

44 CFR 15.3 - Access to Mt. Weather.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 44 Emergency Management and Assistance 1 2012-10-01 2011-10-01 true Access to Mt. Weather. 15.3... HOMELAND SECURITY GENERAL CONDUCT AT THE MT. WEATHER EMERGENCY ASSISTANCE CENTER AND AT THE NATIONAL EMERGENCY TRAINING CENTER § 15.3 Access to Mt. Weather. Mt. Weather contains classified material and areas...

44 CFR 15.3 - Access to Mt. Weather.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 44 Emergency Management and Assistance 1 2010-10-01 2010-10-01 false Access to Mt. Weather. 15.3... HOMELAND SECURITY GENERAL CONDUCT AT THE MT. WEATHER EMERGENCY ASSISTANCE CENTER AND AT THE NATIONAL EMERGENCY TRAINING CENTER § 15.3 Access to Mt. Weather. Mt. Weather contains classified material and areas...

44 CFR 15.3 - Access to Mt. Weather.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 44 Emergency Management and Assistance 1 2014-10-01 2014-10-01 false Access to Mt. Weather. 15.3... HOMELAND SECURITY GENERAL CONDUCT AT THE MT. WEATHER EMERGENCY ASSISTANCE CENTER AND AT THE NATIONAL EMERGENCY TRAINING CENTER § 15.3 Access to Mt. Weather. Mt. Weather contains classified material and areas...

44 CFR 15.3 - Access to Mt. Weather.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 44 Emergency Management and Assistance 1 2011-10-01 2011-10-01 false Access to Mt. Weather. 15.3... HOMELAND SECURITY GENERAL CONDUCT AT THE MT. WEATHER EMERGENCY ASSISTANCE CENTER AND AT THE NATIONAL EMERGENCY TRAINING CENTER § 15.3 Access to Mt. Weather. Mt. Weather contains classified material and areas...

Patterns in Seismicity at Mt St Helens and Mt Unzen

NASA Astrophysics Data System (ADS)

Lamb, Oliver; De Angelis, Silvio; Lavallee, Yan

2014-05-01

Cyclic behaviour on a range of timescales is a well-documented feature of many dome-forming volcanoes. Previous work on Soufrière Hills volcano (Montserrat) and Volcán de Colima (Mexico) revealed broad-scale similarities in behaviour implying the potential to develop general physical models of sub-surface processes [1]. Using volcano-seismic data from Mt St Helens (USA) and Mt Unzen (Japan) this study explores parallels in long-term behaviour of seismicity at two dome-forming systems. Within the last twenty years both systems underwent extended dome-forming episodes accompanied by large Vulcanian explosions or dome collapses. This study uses a suite of quantitative and analytical techniques which can highlight differences or similarities in volcano seismic behaviour, and compare the behaviour to changes in activity during the eruptive episodes. Seismic events were automatically detected and characterized on a single short-period seismometer station located 1.5km from the 2004-2008 vent at Mt St Helens. A total of 714 826 individual events were identified from continuous recording of seismic data from 22 October 2004 to 28 February 2006 (average 60.2 events per hour) using a short-term/long-term average algorithm. An equivalent count will be produced from seismometer recordings over the later stages of the 1991-1995 eruption at MT Unzen. The event count time-series from Mt St Helens is then analysed using Multi-taper Method and the Short-Term Fourier Transform to explore temporal variations in activity. Preliminary analysis of seismicity from Mt St Helens suggests cyclic behaviour of subannual timescale, similar to that described at Volcán de Colima and Soufrière Hills volcano [1]. Frequency Index and waveform correlation tools will be implemented to analyse changes in the frequency content of the seismicity and to explore their relations to different phases of activity at the volcano. A single station approach is used to gain a fine-scale view of variations in

Coso MT Site Locations

DOE Data Explorer

Doug Blankenship

2011-05-04

This data includes the locations of the MT data collected in and around the Coso Geothermal field that covered the West Flank area. These are the data that the 3D MT models were created from that were discussed in Phase 1 of the West Flank FORGE project. The projected coordinate system is NAD 1927 State Plane California IV FIPS 0404 and the Projection is Lambert Conformal Conic. Units are in feet.

Barley Metallothioneins: MT3 and MT4 Are Localized in the Grain Aleurone Layer and Show Differential Zinc Binding1[W][OA

PubMed Central

Hegelund, Josefine Nymark; Schiller, Michaela; Kichey, Thomas; Hansen, Thomas Hesselhøj; Pedas, Pai; Husted, Søren; Schjoerring, Jan Kofod

2012-01-01

Metallothioneins (MTs) are low-molecular-weight, cysteine-rich proteins believed to play a role in cytosolic zinc (Zn) and copper (Cu) homeostasis. However, evidence for the functional properties of MTs has been hampered by methodological problems in the isolation and characterization of the proteins. Here, we document that barley (Hordeum vulgare) MT3 and MT4 proteins exist in planta and that they differ in tissue localization as well as in metal coordination chemistry. Combined transcriptional and histological analyses showed temporal and spatial correlations between transcript levels and protein abundance during grain development. MT3 was present in tissues of both maternal and filial origin throughout grain filling. In contrast, MT4 was confined to the embryo and aleurone layer, where it appeared during tissue specialization and remained until maturity. Using state-of-the-art speciation analysis by size-exclusion chromatography inductively coupled plasma mass spectrometry and electrospray ionization time-of-flight mass spectrometry on recombinant MT3 and MT4, their specificity and capacity for metal ion binding were quantified, showing a strong preferential Zn binding relative to Cu and cadmium (Cd) in MT4, which was not the case for MT3. When complementary DNAs from barley MTs were expressed in Cu- or Cd-sensitive yeast mutants, MT3 provided a much stronger complementation than did MT4. We conclude that MT3 may play a housekeeping role in metal homeostasis, while MT4 may function in Zn storage in developing and mature grains. The localization of MT4 and its discrimination against Cd make it an ideal candidate for future biofortification strategies directed toward increasing food and feed Zn concentrations. PMID:22582132

Application of remote sensing analysis and MT method for identification geothermal prospect zone in Mt. Endut

NASA Astrophysics Data System (ADS)

Akbar, A. M.; Permadi, A. N.; Wildan, D.; Sobirin, R.; Supriyanto

2017-07-01

Mount Endut is located at Banten Province, 40 km southward Rangkasbitung City, with geographic UTM position between 9261000-9274000 N and 639000-652000 E. Preliminary survey at Mt. Endut was geological and geochemical survey in 2006, resistivity survey and MT survey in 2007 with 27 measurement point. All survey conducted by Pusat Sumber Daya Geologi (PSDG). According to result of premilinary survey, Mt. Endut is dominated by quartenary volcanic rock produced by Mt. Endut, which breakthrough tertiary sediment layer. NE to SW normal fault produced surface manifestation, namely Cikawah (CKW) hot spring and Handeleum (HDL) hot spring. According to SiO2 and NaK geothermometer, subsurface temperature of Mt Endut is ranging from 162 to 180 °C. Apparent resistivity maps show that thermal manifestation areas coincide with pronounced high anomaly due to resistive intrusion bodies contrast to conductive sedimentary basements. In order to delineate permeability zone, fracture fault density (FFD) analysis from remote sensing image is carry out. FFD analysis from lansdat 7 image shows the area on westward flank of Mt. Endut have high fracture fault density (162-276 m/km2), higher than it's surrounding area and can be assume that area is weak zone and have high permeability. That's structure density anomaly coincide with low resistivity from Magnetotelluric data. Resistivity structure from Magnetotelluric data shows western flank have low permeability layer (14-27 Ohmm) with average thickness 250 m. Below this layer there is layer with higher resistivity (37-100 Ohmm) with ±1000 m depth and interpreted as shallow reservoir. Massive resistif intrusive bodies act controlled the surface manifestation, and act as boundary and bounded the geothermal system in western part of Mt. Endut.

Rainwater chemistry at a high-altitude station, Mt. Lulin, Taiwan: Comparison with a background station, Mt. Fuji

NASA Astrophysics Data System (ADS)

Wai, Ka Ming; Lin, Neng-Huei; Wang, Sheng-Hsiang; Dokiya, Yukiko

2008-03-01

Samples of rainwater were collected at a high-altitude site in east Asia between April 2003 and May 2005. The volume weighted mean pH value for the whole sampling period was 5.12, approaching that of typical natural water. Non-sea-salt (nss) SO42- and NH4+ were the most abundant anion and cation, respectively, both existing mostly in the form of (NH4)2SO4. Chloride was excessive in most of the samples. The signature of biomass burning in south and Southeast Asia was evident in the Mt. Lulin samples. Concentrations of chemical species were found to be elevated in the spring months, owing to the emissions from south/Southeast Asia and peak biomass burning activities and frequent dust storms (in the Indian Thar Desert). In the summer and fall seasons our samples are mainly influenced by marine air masses. The episodic species concentrations measured at the summit of Mt. Fuji during the spring were due to the influence of volcanic emissions from Miyake-Jima. Tropical cyclones (TC) over the western Pacific region and deep convections play important roles in the transport of boundary layer pollutants to the free troposphere, although their influence is not frequently detected at Mt. Lulin and Mt. Fuji. The rainwater chemistry at Mt. Lulin and Mt. Fuji were examined together with the aerosol chemistry obtained from the TRACE-P and ACE-Asia campaigns. The analysis of the Mt. Lulin data set demonstrates its background characteristics of the rainwater chemistry in east Asia.

Day/night expression of MT1 and MT2 receptors in hypothalamic nuclei of the primate Sapajus apella.

PubMed

Pinato, Luciana; Ramos, Dayane; Hataka, Alessandre; Rossignoli, Patricia S; Granado, Marcos Donisete; Mazzetto, Marina Cardoso; Campos, Leila M G

2017-04-01

Melatonin is involved in the temporal organization of several physiological and behavioral events, controlled by hypothalamic nuclei, like sleep, feeding, reproduction and metabolic modulation and acts through two types of high-affinity G protein-coupled membrane receptors: MT 1 and MT 2 . This study aimed to investigate the expression of MT 1 and MT 2 receptors proteins in four hypothalamic nuclei, i.e., SCN, supraoptic (SON), paraventricular (PVN) and anteroventral periventricular nuclei (AVPV), of the diurnal primate Sapajus apella using immunohistochemistry. Since these areas are involved in the expression of biological rhythms, they are candidates to have variations in their neurochemistry, so the MT 1 and MT 2 expression has been analyzed at a point in light and another in the dark phase. Both receptors were found to have day/night differences in the four hypothalamic nuclei with an apparent inverse expression in the SCN compared with the other areas. These differences could be related to the idea that the individual should be prepared to respond by different ways to melatonin signal within the several processes and can contribute to the efficacy of melatonin ligands or melatonin in therapies. Copyright © 2017 Elsevier B.V. All rights reserved.

MT3DMS: Model use, calibration, and validation

USGS Publications Warehouse

Zheng, C.; Hill, Mary C.; Cao, G.; Ma, R.

2012-01-01

MT3DMS is a three-dimensional multi-species solute transport model for solving advection, dispersion, and chemical reactions of contaminants in saturated groundwater flow systems. MT3DMS interfaces directly with the U.S. Geological Survey finite-difference groundwater flow model MODFLOW for the flow solution and supports the hydrologic and discretization features of MODFLOW. MT3DMS contains multiple transport solution techniques in one code, which can often be important, including in model calibration. Since its first release in 1990 as MT3D for single-species mass transport modeling, MT3DMS has been widely used in research projects and practical field applications. This article provides a brief introduction to MT3DMS and presents recommendations about calibration and validation procedures for field applications of MT3DMS. The examples presented suggest the need to consider alternative processes as models are calibrated and suggest opportunities and difficulties associated with using groundwater age in transport model calibration.

Impacts of river-bed aggradation and lahar activity downstream of Santiaguito Volcano, Guatemala: a Landsat Thematic Mapper perspective

NASA Astrophysics Data System (ADS)

Flynn, L. P.; Harris, A. J.; Davies, M. A.; Vallence, J. W.; Rose, W. I.

2002-12-01

Lava extrusion at Santiaguito volcano, Guatemala and rainfall runoff cause lahars and river-bed aggradation downstream of the volcano. We present a method that uses vegetation indices extracted from Landsat Thematic Mapper (TM) data to identify zones of impact. The method differentiates vegetation-free and vegetated pixels, constrains areas affected by aggradation, and generates catchment-wide aggradation maps. Application of the technique to 22 TM images acquired between 1987 and 2000 helped us to measure, map and track temporal and spatial variations in the area of lahar impact and river aggradation. To verify our TM-based analyses we carried out 3 field campaigns between 2000 and 2002, during which we focused on a segment of aggraded river beds ~8 km from Santiaguito. We then used our TM and field-based studies to document and validate changes at this location, as follows: (1) Time varying effects of aggradation. The main river to head at Santiaguito is R¡o Nima II. The TM analysis indicated development of a new channel cutting across farm land on the western edge of R¡o Nima II between 1996 and 2000. Field checking showed that development of an aggraded, convex, bed profile caused channels to flow westward away from the aggraded river-channel system. (2) Emplacement of lava flows. The TM time series indicated that a new lava flow extended into the upper reaches of the Rio Nima I during 1996 and triggered aggradation. Field checking confirmed that a new supply of volcaniclastic material had extended aggradation into this previously unaffected drainage. (3) River capture. Capture of R¡o Nima I by R¡o Samal has increased aggradation of along new sections of R¡o Samal , an effect evident in our TM mapping. Field checking showed that, although R¡o Samala does not head at Santiaguito, the new supply of material from R¡o Nima I triggered rapid aggradation of R¡o Samal after 1996.

Mt. Everest

NASA Image and Video Library

1994-09-30

STS068-259-009 (30 September-11 October 1994) --- This south-looking, summer-time view of Mt. Everest (center) - with strong sense of three dimension because of reduced amount of snow - and neighboring peaks of the Himalayas. Clouds cover lower slopes in India.

mtDNA, Metastasis, and the Mitochondrial Unfolded Protein Response (UPRmt).

PubMed

Kenny, Timothy C; Germain, Doris

2017-01-01

While several studies have confirmed a link between mitochondrial DNA (mtDNA) mutations and cancer cell metastasis, much debate remains regarding the nature of the alternations in mtDNA leading to this effect. Meanwhile, the mitochondrial unfolded protein response (UPR mt ) has gained much attention in recent years, with most studies of this pathway focusing on its role in aging. However, the UPR mt has also been studied in the context of cancer. More recent work suggests that rather than a single mutation or alternation, specific combinatorial mtDNA landscapes able to activate the UPR mt may be those that are selected by metastatic cells, while mtDNA landscapes unable to activate the UPR mt do not. This review aims at offering an overview of the confusing literature on mtDNA mutations and metastasis and the more recent work on the UPR mt in this setting.

Mt. Etna, Italy

NASA Image and Video Library

2002-11-07

On Sunday, November 3, 2002, Mt. Etna's ash-laden plume was imaged by the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra satellite. The plume is seen blowing toward the south-southeast, over the city and airport of Catania, Sicily. The previous day, the plume was blowing toward the northwest, and posed no hazard to Catania. The current eruption of Mt. Etna, Europe's most active volcano, began on October 27. These sorts of observations from space may help civil defense authorities mitigate hazards from active eruptions. Space data may also help scientists evaluate the behavior and effects volcanic eruptions have on our global climate system. http://photojournal.jpl.nasa.gov/catalog/PIA03881

Zinc metallothionein (MT) induction by parenteral iron and endotoxin: A temporal analysis of hepatic MT mRNA changes

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCormick, C.C.

The present study was undertaken to compare the temporal characteristics of iron-induced hepatic MT mRNA accumulation to that effected by endotoxin. Young chicks were given (ip) either endotoxin, ferrous gluconate or an equivalent volume of saline. At various times following injections, liver was obtained from 5 chicks per treatment for total RNA extraction. Equal amounts of total hepatic RNA from each chick were pooled and 10 {mu}g separated by denaturing agarose gel electrophoresis. Hepatic MT mRNA and albumin mRNA were analyzed by Northern blot analysis using synthetic oligonucleotides. The results indicated little temporal difference in the accumulation of hepatic MTmore » mRNA as affected by either endotoxin or iron. In both treatments, MT mRNA was minimally affected at 3 hours post-injection. Maximum accumulation was achieved during a 6 h period from 6 to 12 hours post-injection. At 24 hours, MT mRNA was considerably higher in liver of endotoxin-injected chicks when compared to that of iron-injection chicks. Albumin expression appeared not to be substantially affected by either treatment. The results suggest that the induction of hepatic MT by iron injection is not substantially different than that observed following endotoxin administration. It would be speculative to suggest that the processes by which MT is induced under these conditions are also similar.« less

Genetic diversities of MT-ND1 and MT-ND2 genes are associated with high-altitude adaptation in yak.

PubMed

Shi, Yu; Hu, Yongsong; Wang, Jie; Elzo, Mauricio A; Yang, Xue; Lai, Songjia

2018-04-01

Tibetan yak (Bos grunniens) inhabiting the Qinghai-Tibet Plateau (QTP) where the average altitude is 4000 m, is specially adapted to live at these altitudes. Conversely, cattle (B. taurus) has been found to suffer from high-altitude hypertension or heart failure when exposed to these high altitudes. Two mitochondrial genes, MT-ND1 and MT-ND2, encode two subunits of NADH dehydrogenase play an essential role in the electron transport chain of oxidative phosphorylation (OXPHOS). We sequenced these two mitochondrial genes in two bovine groups (70 Tibetan yaks and 70 Xuanhan cattle) and downloaded 300 sequences of B. taurus (cattle), 93 sequences of B. grunniens (domestic yak), and 2 sequences of B. mutus (wild yak) from NCBI to increase our understanding of the mechanisms of adaptability to hypoxia at high altitudes in yaks compared to cattle. MT-ND1 SNP m.3907 C > T, present in all Tibetan yaks, was positively associated with high-altitude adaptation (p < .0006). Specially, mutation m.3638 A > G present in all cattle, resulting in the termination of transcription, was negatively associated with high-altitude adaptation (p < .0006). Additionally, MT-ND2 SNPs m.4351 G > A and m.5218 C > T also showed positive associations with high-altitude adaptation (p < .0004). MT-ND1 haplotypes H2, H3, H4, H6, and H7 showed positive associations but haplotype H20 had a negative association with high-altitude adaptation (p < .0008). Similarly, MT-ND2 haplotypes Ha1 Ha8, Ha10, and Ha11 were positively associated whereas haplotype Ha2 was negatively associated with adaptability to high-altitudes (p < .0008). Thus, MT-ND1 and MT-ND2 can be considered as candidate genes associated with adaptation to high-altitude environments.

Characterization of pancreatic lesions from MT-tgf alpha, Ela-myc and MT-tgf alpha/Ela-myc single and double transgenic mice.

PubMed

Liao, Dezhong Joshua; Wang, Yong; Wu, Jiusheng; Adsay, Nazmi Volkan; Grignon, David; Khanani, Fayyaz; Sarkar, Fazlul H

2006-07-05

In order to identify good animal models for investigating therapeutic and preventive strategies for pancreatic cancer, we analyzed pancreatic lesions from several transgenic models and made a series of novel findings. Female MT-tgf alpha mice of the MT100 line developed pancreatic proliferation, acinar-ductal metaplasia, multilocular cystic neoplasms, ductal adenocarcinomas and prominent fibrosis, while the lesions in males were less severe. MT-tgf alpha-ES transgenic lines of both sexes developed slowly progressing lesions that were similar to what was seen in MT100 males. In both MT100 and MT-tgf alpha-ES lines, TGF alpha transgene was expressed mainly in proliferating ductal cells. Ela-myc transgenic mice with a mixed C57BL/6, SJL and FVB genetic background developed pancreatic tumors at 2-7 months of age, and half of the tumors were ductal adenocarcinomas, similar to what was reported originally by Sandgren et al 1. However, in 20% of the mice, the tumors metastasized to the liver. MT100/Ela-myc and MT-tgf alpha-ES/Ela-myc double transgenic mice developed not only acinar carcinomas and mixed carcinomas as previously reported but also various ductal-originated lesions, including multilocular cystic neoplasms and ductal adenocarcinomas. The double transgenic tumors were more malignant and metastasized to the liver at a higher frequency (33%) compared with the Ela-myc tumors. Sequencing of the coding region of p16ink4, k-ras and Rb cDNA in small numbers of pancreatic tumors did not identify mutations. The short latency for tumor development, the variety of tumor morphology and the liver metastases seen in Ela-myc and MT-tgf alpha/Ela-myc mice make these animals good models for investigating new therapeutic and preventive strategies for pancreatic cancer.

27 CFR 9.123 - Mt. Veeder.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false Mt. Veeder. 9.123 Section 9.123 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.123 Mt. Veeder. (a) Name. The name of the viticultural are...

27 CFR 9.123 - Mt. Veeder.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Mt. Veeder. 9.123 Section 9.123 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.123 Mt. Veeder. (a) Name. The name of the viticultural are...

27 CFR 9.123 - Mt. Veeder.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false Mt. Veeder. 9.123 Section 9.123 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.123 Mt. Veeder. (a) Name. The name of the viticultural are...

27 CFR 9.123 - Mt. Veeder.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Mt. Veeder. 9.123 Section 9.123 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.123 Mt. Veeder. (a) Name. The name of the viticultural are...

27 CFR 9.123 - Mt. Veeder.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false Mt. Veeder. 9.123 Section 9.123 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY ALCOHOL AMERICAN VITICULTURAL AREAS Approved American Viticultural Areas § 9.123 Mt. Veeder. (a) Name. The name of the viticultural are...

Identifying Water on Mt. Baker and Mt. St. Helens, WA with Geophysics: Implications for Volcanic Landslide Hazards

NASA Astrophysics Data System (ADS)

Finn, C.; Bedrosian, P.; Wisniewski, M.; Deszcz-Pan, M.

2015-12-01

Groundwater position, abundance, and flow rates within a volcano affect the transmission of fluid pressure, transport of mass and heat and formation of mechanically weak hydrothermal alteration influencing the stability of volcanoes. In addition, eruptions can shatter volcanic rocks, weakening the edifice. Helicopter magnetic and electromagnetic (HEM) data collected over Mt. Baker and Mt. St. Helens volcanoes reveal the distribution of water, shattered volcanic rocks and hydrothermal alteration essential to evaluating volcanic landslide hazards. These data, combined with geological mapping and rock property measurements, indicate the presence of localized <100 m thick zones of water-saturated hydrothermally altered rock beneath Sherman Crater and the Dorr Fumarole Fields at Mt. Baker. Nuclear magnetic resonance data indicate that the hydrothermal clays contain ~50% bound water with no evidence for free water ponded beneath the ice. The HEM data suggest water-saturated fresh volcanic rocks from the surface to the detection limit (~100 m) over the entire summit of Mt. Baker (below the ice). A 50-100 m thick high resistivity layer (>1500 ohm-m) corresponding to domes, debris avalanche, volcanic rocks and glaciers mantles the crater at Mt. St. Helens. Shallow low resistivity layers corresponding to fresh, cold water and hot brines are observed below the high resistivity surface in EM data. Shallow ground water mainly concentrates in shattered dome material in the crater of Mt. St. Helens. Aeromagnetic data indicate the location of basalts sandwiched between debris avalanche deposits and shattered dome material. The combination of the EM and magnetic data help map the location of the shattered dome material that is considered to be the failure surface for the 1980 debris avalanche. The EM data image the regional groundwater table near the base of the volcano. The geophysical identification of groundwater and weak layers constrain landslide hazards assessments.

Polymorphisms in arsenic(+III oxidation state) methyltransferase (AS3MT) predict gene expression of AS3MT as well as arsenic metabolism.

PubMed

Engström, Karin; Vahter, Marie; Mlakar, Simona Jurkovic; Concha, Gabriela; Nermell, Barbro; Raqib, Rubhana; Cardozo, Alejandro; Broberg, Karin

2011-02-01

Arsenic (As) occurs as monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA) in humans, and the methylation pattern demonstrates large interindividual differences. The fraction of urinary MMA is a marker for susceptibility to As-related diseases. We evaluated the impact of polymorphisms in five methyltransferase genes on As metabolism in two populations, one in South America and one in Southeast Asia. The methyltransferase genes were arsenic(+III oxidation state) methyltransferase (AS3MT), DNA-methyltransferase 1a and 3b (DNMT1a and DNMT3b, respectively), phosphatidylethanolamine N-methyltransferase (PEMT), and betaine-homocysteine methyltransferase (BHMT). AS3MT expression was analyzed in peripheral blood. Subjects were women exposed to As in drinking water in the Argentinean Andes [n = 172; median total urinary As (U-As), 200 µg/L] and in rural Bangladesh (n = 361; U-As, 100 µg/L; all in early pregnancy). Urinary As metabolites were measured by high-pressure liquid chromatography/inductively coupled plasma mass spectrometry. Polymorphisms (n = 22) were genotyped with Sequenom, and AS3MT expression was measured by quantitative real-time polymerase chain reaction using TaqMan expression assays. Six AS3MT polymorphisms were significantly associated with As metabolite patterns in both populations (p ≤ 0.01). The most frequent AS3MT haplotype in Bangladesh was associated with a higher percentage of MMA (%MMA), and the most frequent haplotype in Argentina was associated with a lower %MMA and a higher percentage of DMA. Four polymorphisms in the DNMT genes were associated with metabolite patterns in Bangladesh. Noncoding AS3MT polymorphisms affected gene expression of AS3MT in peripheral blood, demonstrating that one functional impact of AS3MT polymorphisms may be altered levels of gene expression. Polymorphisms in AS3MT significantly predicted As metabolism across these two very different populations, suggesting that AS3MT may have an impact on As metabolite

Polymorphisms in Arsenic(+III Oxidation State) Methyltransferase (AS3MT) Predict Gene Expression of AS3MT as Well as Arsenic Metabolism

PubMed Central

Engström, Karin; Vahter, Marie; Mlakar, Simona Jurkovic; Concha, Gabriela; Nermell, Barbro; Raqib, Rubhana; Cardozo, Alejandro; Broberg, Karin

2011-01-01

Background Arsenic (As) occurs as monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA) in humans, and the methylation pattern demonstrates large interindividual differences. The fraction of urinary MMA is a marker for susceptibility to As-related diseases. Objectives We evaluated the impact of polymorphisms in five methyltransferase genes on As metabolism in two populations, one in South America and one in Southeast Asia. The methyltransferase genes were arsenic(+III oxidation state) methyltransferase (AS3MT), DNA-methyltransferase 1a and 3b (DNMT1a and DNMT3b, respectively), phosphatidylethanolamine N-methyltransferase (PEMT), and betaine-homocysteine methyltransferase (BHMT). AS3MT expression was analyzed in peripheral blood. Methods Subjects were women exposed to As in drinking water in the Argentinean Andes [n = 172; median total urinary As (U-As), 200 μg/L] and in rural Bangladesh (n = 361; U-As, 100 μg/L; all in early pregnancy). Urinary As metabolites were measured by high-pressure liquid chromatography/inductively coupled plasma mass spectrometry. Polymorphisms (n = 22) were genotyped with Sequenom, and AS3MT expression was measured by quantitative real-time polymerase chain reaction using TaqMan expression assays. Results Six AS3MT polymorphisms were significantly associated with As metabolite patterns in both populations (p ≤ 0.01). The most frequent AS3MT haplotype in Bangladesh was associated with a higher percentage of MMA (%MMA), and the most frequent haplotype in Argentina was associated with a lower %MMA and a higher percentage of DMA. Four polymorphisms in the DNMT genes were associated with metabolite patterns in Bangladesh. Noncoding AS3MT polymorphisms affected gene expression of AS3MT in peripheral blood, demonstrating that one functional impact of AS3MT polymorphisms may be altered levels of gene expression. Conclusions Polymorphisms in AS3MT significantly predicted As metabolism across these two very different populations

Decreased Circulating mtDNA Levels in Professional Male Volleyball Players.

PubMed

Nasi, Milena; Cristani, Alessandro; Pinti, Marcello; Lamberti, Igor; Gibellini, Lara; De Biasi, Sara; Guazzaloca, Alessandro; Trenti, Tommaso; Cossarizza, Andrea

2016-01-01

Exercise exerts various effects on the immune system, and evidence is emerging on its anti-inflammatory effects; the mechanisms on the basis of these modifications are poorly understood. Mitochondrial DNA (mtDNA) released from damaged cells acts as a molecule containing the so-called damage-associated molecular patterns and can trigger sterile inflammation. Indeed, high plasma levels of mtDNA are associated to several inflammatory conditions and physiological aging and longevity. The authors evaluated plasma mtDNA in professional male volleyball players during seasonal training and the possible correlation between mtDNA levels and clinical parameters, body composition, and physical performance. Plasma mtDNA was quantified by real-time PCR every 2 mo in 12 professional volleyball players (PVPs) during 2 consecutive seasons. As comparison, 20 healthy nonathlete male volunteers (NAs) were analyzed. The authors found lower levels of mtDNA in plasma of PVPs than in NAs. However, PVPs showed a decrease of circulating mtDNA only in the first season, while no appreciable variations were observed during the second season. No correlation was observed among mtDNA, hematochemical, and anthropometric parameters. Regular physical activity appeared associated with lower levels of circulating mtDNA, further confirming the protective, anti-inflammatory effect of exercise.

Decay spectroscopy of element 115 daughters: Rg 280 → Mt 276 and Mt 276 → Bh 272

DOE PAGES

Gates, J. M.; Gregorich, K. E.; Gothe, O. R.; ...

2015-08-03

In this study, forty-six decay chains, assigned to the decay of 288115, were produced using the 243Am ( 48Ca, 3n) 288115 reaction at the Lawrence Berkeley National Laboratory 88-in. cyclotron. The resulting series of α decays were studied using α-photon and α-x-ray spectroscopies. Multiple α-photon coincidences were observed in the element 115 decay chain members, particularly in the third- and fourth-generation decays (presumed to be 280Rg and 276Mt, respectively). Upon combining these data with those from 22 288115 decay chains observed in a similar experiment, updated level schemes in 276Mt and 272Bh (populated by the α decay of 280Rg andmore » 276Mt, respectively) are proposed. Additionally, photons were observed in the energy range expected for K x rays coincident with the α decay of both 280Rg and 276Mt. However, Compton scattering of higher-energy γ rays and discrete transitions are present in the K x-ray region preventing a definitive Z identification to be made based on observation of characteristic K x-ray energies.« less

Italy: Mt. Etna

Atmospheric Science Data Center

2013-04-17

article title:  Eruption of Mt. Etna     View ... repeated caldera collapse, and partially buried by younger volcanic structures. Eruptions are related to a complex tectonic situation, ... available at JPL . July 22, 2001 - Eruption of the volcano in true-color and stereo. project:  ...

Pharmacology of Ramelteon, a Selective MT1/MT2 Receptor Agonist: A Novel Therapeutic Drug for Sleep Disorders

PubMed Central

Miyamoto, Masaomi

2009-01-01

An estimated one-third of the general population is affected by insomnia, and this number is increasing due to more stressful working conditions and the progressive aging of society. However, current treatment of insomnia with hypnotics, gamma-aminobutyric acid A (GABAA) receptor modulators, induces various side effects, including cognitive impairment, motor disturbance, dependence, tolerance, hangover, and rebound insomnia. Ramelteon (Rozerem; Takeda Pharmaceutical Company Limited, Osaka, Japan) is an orally active, highly selective melatonin MT1/MT2 receptor agonist. Unlike the sedative hypnotics that target GABAA receptor complexes, ramelteon is a chronohypnotic that acts on the melatonin MT1 and MT2 receptors, which are primarily located in the suprachiasmatic nucleus, the body's “master clock.” As such, ramelteon possesses the first new therapeutic mechanism of action for a prescription insomnia medication in over three decades. Ramelteon has demonstrated sleep-promoting effects in clinical trials, and coupled with its favorable safety profile and lack of abuse potential or dependence, this chronohypnotic provides an important treatment option for insomnia. PMID:19228178

Subsurface Structure Interpretation Beneath of Mt. Pandan Based on Gravity Data

NASA Astrophysics Data System (ADS)

Santoso, D.; Wahyudi, E. J.; Alawiyah, S.; Nugraha, A. D.; Widiyantoro, S.; Kadir, W. G. A.; Supendi, P.; Wiyono, S.; Zulkafriza

2017-04-01

Mt. Pandan is one of the volcano that state as dormant volcano. On the other hand, Smyth et al. (2008) defined that Mt. Pandan is an active volcano. This volcano is apart a volcanic chain in Java island which is trending east-west along the island. This volcanic chain known as present day volcanic arc. Mt. Wilis is located in the south and it relatively much bigger compare to Mt. Pandan. There were earthquakes activity experienced in the surrounding Mt. Pandan area in the past several years. This event is interesting, because Mt. Pandan is not classify as the active volcano according to the list of volcanoes in Indonesia. On the otherhand Smyth et. al. (2008) mentioned that G. Pandan as modern volcanic which is located in Kendeng Zone of East Java. Gravity measurement around Mt. Pandan area was done in order to understand subsurface structure of Mt. Pandan. Gravity interpretation results shows that there is a low density structure beneath Mt. Pandan. It could be interpreted as existing of magma body below the surface. Some indication of submagmatic activities were found as hot spring and warm ground. Therefore it could be concluded that there is a possibility of magmatic activity below the Mt. Pandan.

α -decay chains of superheavy Mt-279265 isotopes

NASA Astrophysics Data System (ADS)

Santhosh, K. P.; Nithya, C.

2017-10-01

The α -decay chains of the isotopes Mt-279265 are predicted by comparing the α half-lives calculated within the Coulomb and proximity potential model for deformed nuclei of Santhosh et al. [Nucl. Phys. A 850, 34 (2011)], 10.1016/j.nuclphysa.2010.12.002 with the spontaneous fission half-lives using the shell-effect-dependent formula of Santhosh and Nithya [Phys. Rev. C 94, 054621 (2016)], 10.1103/PhysRevC.94.054621. α half-lives also are calculated using different theoretical formalisms for comparison. The predicted half-lives and decay modes match well with the experimental results. The use of four different mass tables for calculating the α - decay energies indicates that the mass table of Wang et al. [Chin. Phys. C 41, 030003 (2017)], 10.1088/1674-1137/41/3/030003, which is based on the AME2016 atomic mass evaluation, is in better agreement with experimental results. The paper predicts long α chains from 265,267-269,271-273MT with half-lives within experimental limits. The isotopes 274-276,278Mt exhibit 2α chains followed by spontaneous fission. The 2α chain of 266Mt and the 4α chain of 270Mt end with electron capture. The isotopes Mt,279277 decay via spontaneous fission. We hope that the paper will open up new areas in this field.

The Formation and Erosion History of Mt. Sharp

NASA Technical Reports Server (NTRS)

Allen, Carlton C.; Dapremont, Angela M.

2014-01-01

The Curiosity rover is exploring 155 km diameter Gale crater and Mt. Sharp, Gale's 5 km high central mound (Fig. 1). This study addresses the formation and erosion history of Mt. Sharp. Gale lies on the topographic dichotomy between the southern highlands and the northern plains - a drop of over 2 km [1,2]. Altitude differences between the north and south rim reflect this regional slope, as do altitude differences between the deep annulus north of Mt. Sharp and the southern crater floor. Orbiter and rover images demonstrate that most exposed areas on Mt. Sharp consist of thin, sub-parallel units interpreted as sedimentary layers [3]. Gale is typical of the 50 large martian craters that have been totally or partially filled with such layers [4,5]. In many craters these sediments have been deeply eroded. Central Peak and Peak Ring: The highest point on Mt. Sharp, near the crater's center, is interpreted as a central peak [6]. The peak has a massive lower portion and a thin, smooth capping deposit (Fig. 2). Gale's size is transitional between martian craters with single central peaks and craters with peak rings approximately half the crater's diameter [2,6]. The boundaries of Mt. Sharp, as well as an arc of hills to the southeast of the mountain, closely match a circle approximately 80 km in diameter (Fig. 3). This morphology suggests that the Gale impact may have formed both a central peak and a partial peak ring, which is covered by the sediments of Mt. Sharp in the north and possibly exposed in the arc of eroded hills in the southeast quadrant (Figs. 3,4).

First Results from SERPENT Marine MT Study

NASA Astrophysics Data System (ADS)

Naif, S.; Key, K. W.; Constable, S.; Evans, R. L.

2010-12-01

In April 2010 we conducted a controlled source electromagnetic (CSEM) and magnetotelluric (MT) survey over the Middle Americas subduction zone offshore Nicaragua. Seismic and heat flow studies have been conducted in the region to explore the role water plays at convergent margins, yet the quantity of water entering the downgoing slab remains poorly constrained. Electrical conductivity, however, is highly sensitive to the amount and distribution of water in the crust, and possibly mantle. Our broadband marine MT receivers recorded electric and magnetic field variations at the seafloor in water depths ranging from 60-5100 m. A total of 54 receiver deployments along a 300 km profile resulted in the largest MT dataset ever collected over an active subduction zone, all recorded in a single 28 day cruise aboard the R/V Melville. Spectrograms of the raw data show strong signal, including a significant magnetic storm from 5/2 to 5/3. Robust multiple station processing of the MT data produced high quality apparent resistivity and phase estimates for periods of roughly 10-20,000 s. Impedance polar diagrams and skew estimates display an evolution of 1D structure on the abyssal plain, 2D structure at the outer rise, 3D structure on/near the trench, and 1D-2D structure along the continental shelf. The MT responses generally lack the severe anisotropy usually associated with the ocean-side coast effect in near-shore MT studies. However, large distortions are evident at a few sites on the prism side of the trench, where extremely high skews are strongly localized in both space and frequency; these are spatially correlated with cusps in apparent resistivity and negative phase wrapping of the TE mode. We suspect this is caused by a combination of severe bathymetric effects and local variations in conductivity structure. Initial modeling results will be presented.

Construct validity of the MMPI-2 College Maladjustment (Mt) Scale.

PubMed

Barthlow, Deanna L; Graham, John R; Ben-Porath, Yossef S; McNulty, John L

2004-09-01

The construct validity of the MMPI-2 (Minnesota Multiphasic Personality Inventory-2) College Maladjustment (Mt) Scale was examined using 376 student clients at a university psychological clinic. A principal components analysis and correlations of Mt scale scores with clients' and therapists' ratings of symptoms and functioning showed that the Mt scale identifies the presence of maladjustment as defined in terms of depressive and anxious symptoms. There is no evidence to show that the scale is specific to college students or that it is sensitive to severe psychological disturbance. The Mt scale does not inform the clinician as to why a person is distressed. In addition, there is no evidence from this study to suggest the superiority of the Mt scale over other MMPI-2 maladjustment measures. Therapists should use the entire MMPI-2 profile, not just the Mt scale, to gain the most comprehensive and specific understanding of clients.

Constraining particle size-dependent plume sedimentation from the 17 June 1996 eruption of Ruapehu Volcano, New Zealand, using geophysical inversions

NASA Astrophysics Data System (ADS)

Klawonn, M.; Frazer, L. N.; Wolfe, C. J.; Houghton, B. F.; Rosenberg, M. D.

2014-03-01

Weak subplinian-plinian plumes pose frequent hazards to populations and aviation, yet many key parameters of these particle-laden plumes are, to date, poorly constrained. This study recovers the particle size-dependent mass distribution along the trajectory of a well-constrained weak plume by inverting the dispersion process of tephra fallout. We use the example of the 17 June 1996 Ruapehu eruption in New Zealand and base our computations on mass per unit area tephra measurements and grain size distributions at 118 sample locations. Comparisons of particle fall times and time of sampling collection, as well as observations during the eruption, reveal that particles smaller than 250 μm likely settled as aggregates. For simplicity we assume that all of these fine particles fell as aggregates of constant size and density, whereas we assume that large particles fell as individual particles at their terminal velocity. Mass fallout along the plume trajectory follows distinct trends between larger particles (d≥250 μm) and the fine population (d<250 μm) that are likely due to the two different settling behaviors (aggregate settling versus single-particle settling). In addition, we computed the resulting particle size distribution within the weak plume along its axis and find that the particle mode shifts from an initial 1φ mode to a 2.5φ mode 10 km from the vent and is dominated by a 2.5 to 3φ mode 10-180 km from vent, where the plume reaches the coastline and we do not have further field constraints. The computed particle distributions inside the plume provide new constraints on the mass transport processes within weak plumes and improve previous models. The distinct decay trends between single-particle settling and aggregate settling may serve as a new tool to identify particle sizes that fell as aggregates for other eruptions.

Metabolic rescue in pluripotent cells from patients with mtDNA disease.

PubMed

Ma, Hong; Folmes, Clifford D L; Wu, Jun; Morey, Robert; Mora-Castilla, Sergio; Ocampo, Alejandro; Ma, Li; Poulton, Joanna; Wang, Xinjian; Ahmed, Riffat; Kang, Eunju; Lee, Yeonmi; Hayama, Tomonari; Li, Ying; Van Dyken, Crystal; Gutierrez, Nuria Marti; Tippner-Hedges, Rebecca; Koski, Amy; Mitalipov, Nargiz; Amato, Paula; Wolf, Don P; Huang, Taosheng; Terzic, Andre; Laurent, Louise C; Izpisua Belmonte, Juan Carlos; Mitalipov, Shoukhrat

2015-08-13

Mitochondria have a major role in energy production via oxidative phosphorylation, which is dependent on the expression of critical genes encoded by mitochondrial (mt)DNA. Mutations in mtDNA can cause fatal or severely debilitating disorders with limited treatment options. Clinical manifestations vary based on mutation type and heteroplasmy (that is, the relative levels of mutant and wild-type mtDNA within each cell). Here we generated genetically corrected pluripotent stem cells (PSCs) from patients with mtDNA disease. Multiple induced pluripotent stem (iPS) cell lines were derived from patients with common heteroplasmic mutations including 3243A>G, causing mitochondrial encephalomyopathy and stroke-like episodes (MELAS), and 8993T>G and 13513G>A, implicated in Leigh syndrome. Isogenic MELAS and Leigh syndrome iPS cell lines were generated containing exclusively wild-type or mutant mtDNA through spontaneous segregation of heteroplasmic mtDNA in proliferating fibroblasts. Furthermore, somatic cell nuclear transfer (SCNT) enabled replacement of mutant mtDNA from homoplasmic 8993T>G fibroblasts to generate corrected Leigh-NT1 PSCs. Although Leigh-NT1 PSCs contained donor oocyte wild-type mtDNA (human haplotype D4a) that differed from Leigh syndrome patient haplotype (F1a) at a total of 47 nucleotide sites, Leigh-NT1 cells displayed transcriptomic profiles similar to those in embryo-derived PSCs carrying wild-type mtDNA, indicative of normal nuclear-to-mitochondrial interactions. Moreover, genetically rescued patient PSCs displayed normal metabolic function compared to impaired oxygen consumption and ATP production observed in mutant cells. We conclude that both reprogramming approaches offer complementary strategies for derivation of PSCs containing exclusively wild-type mtDNA, through spontaneous segregation of heteroplasmic mtDNA in individual iPS cell lines or mitochondrial replacement by SCNT in homoplasmic mtDNA-based disease.

The expression characteristics of mt-ND2 gene in chicken.

PubMed

Zhang, Wenwen; Hou, Lingling; Wang, Ting; Lu, Weiwei; Tao, Yafei; Chen, Wen; Du, Xiaohui; Huang, Yanqun

2016-09-01

Subunit 2 of NADH dehydrogenase (ND2) is encoded by the mt-ND2 gene and plays a critical role in controlling the production of the mitochondrial reactive oxygen species. Our study focused on exploring the mt-ND2 tissue expression patterns and the effects of energy restriction and dietary fat (linseed oil, corn oil, sesame oil or lard) level (2.5% and 5%) on its expression in chicken. The results showed that mt-ND2 gene was expressed in the 15 tissues of hybrid chickens with the highest level in heart and lowest level in pancreas tissue; 30% energy restriction did not significantly affect mt-ND2 mRNA level in chicken liver tissue. Both the mt-ND2 mRNA levels in chicken pectoralis (p < 0.05) and hepatic tissues (p < 0.05) at 42 d-old were affected by the type of dietary fats in 5% level, while not in abdominal fat tissues. The expression of mt-ND2 in hepatic tissues was down-regulated with chicken age (p < 0.01). The interactive effect of dietary fat types with chicken age (p < 0.05) was significant on mt-ND2 mRNA level. The study demonstrated that mt-ND2 gene was extensively expressed in tissues, and the expression was affected by dietary fat types and chicken age.

Full waveform ambient noise tomography of Mount Rainer

NASA Astrophysics Data System (ADS)

Flinders, A. F.; Shen, Y.

2014-12-01

Mount Rainier towers over the landscape of western Washington, ranking with Fuji-yama in Japan, Mt. Pinatubo in the Philippines, and Mt. Vesuvius in Italy, as one of the great stratovolcanoes of the world. Notwithstanding it's picturesque stature, Mt. Rainier is potentially the most devastating stratovolcano in North America, with more than 3.5 million people living beneath its shadow in the Seattle-Tacoma area. The primary hazard posed by the volcano is in the form of highly destructive volcanic debris flows (lahars). These lahars form when water and/or melted ice erode away and entrain preexisting volcanic sediment. At Mt. Rainier these flows are often initiated by sector collapse of the volcano's hydrothermally rotten flanks and compounded from Mt. Rainier's extensive snow and glacial ice coverage. It is therefore imperative to ascertain the extent of summit hydrothermal alteration within the volcano, and determine areas prone to collapse. Despite being one of the sixteen volcanoes globally designated by the International Association of Volcanology and Chemistry of the Earth's Interior as warranting detailed and focused study, Mt. Rainier remains enigmatic both in terms of shallow internal structure and the degree of summit hydrothermal alteration. We image this shallow internal structure and areas of possible summit alteration using ambient noise tomography. Our full waveform forward modeling includes high-resolution topography, allowing us to accurately account for the effects of topography on the propagation of short-period Rayleigh waves. Empirical Green's functions were extracted from 80 stations within 200 km of Mount Rainier and compared with synthetic greens functions over multiple frequency bands from 2-28 seconds. The preliminary model shows a broad (60 km wide) low shear-wave velocity anomaly in the mid-crust beneath the volcano. The mid-crust low-velocity body extends to the surface beneath the volcano summit in a narrow near-vertical conduit, the

SignMT: An Alternative Language Learning Tool

ERIC Educational Resources Information Center

Ditcharoen, Nadh; Naruedomkul, Kanlaya; Cercone, Nick

2010-01-01

Learning a second language is very difficult, especially, for the disabled; the disability may be a barrier to learn and to utilize information written in text form. We present the SignMT, Thai sign to Thai machine translation system, which is able to translate from Thai sign language into Thai text. In the translation process, SignMT takes into…

Food-induced reinforcement is abrogated by the genetic deletion of the MT1 or MT2 melatonin receptor in C3H/HeN mice.

PubMed

Clough, Shannon J; Hudson, Randall L; Dubocovich, Margarita L

2018-05-02

Palatable food is known for its ability to enhance reinforcing responses. Studies have suggested a circadian variation in both drug and natural reinforcement, with each following its own time course. The goal of this study was to determine the role of the MT 1 and MT 2 melatonin receptors in palatable snack food-induced reinforcement, as measured by the conditioned place preference (CPP) paradigm during the light and dark phases. C3H/HeN wild-type mice were trained for snack food-induced CPP at either ZT 6 - 8 (ZT: Zeitgeber time; ZT 0 = lights on), when endogenous melatonin levels are low, or ZT 19 - 21, when melatonin levels are high. These time points also correspond to the high and low points for expression of the circadian gene Period1, respectively. The amount of snack food (chow, Cheetos®, Froot Loops® and Oreos®) consumed was of similar magnitude at both times, however only C3H/HeN mice conditioned to snack food at ZT 6 - 8 developed a place preference. C3H/HeN mice with a genetic deletion of either the MT 1 (MT 1 KO) or MT 2 (MT 2 KO) receptor tested at ZT 6 - 8 did not develop a place preference for snack food. Although the MT 2 KO mice showed a similar amount of snack food consumed when compared to wild-type mice, the MT 1 KO mice consumed significantly less than either genotype. We conclude that in our mouse model snack food-induced CPP is dependent on time of day and the presence of the MT 1 or MT 2 receptors, suggesting a role for melatonin and its receptors in snack food-induced reinforcement. Copyright © 2018 Elsevier B.V. All rights reserved.

Mitochondrial DNA copy number threshold in mtDNA depletion myopathy.

PubMed

Durham, S E; Bonilla, E; Samuels, D C; DiMauro, S; Chinnery, P F

2005-08-09

The authors measured the absolute amount of mitochondrial DNA (mtDNA) within single muscle fibers from two patients with thymidine kinase 2 (TK2) deficiency and two healthy controls. TK2 deficient fibers containing more than 0.01 mtDNA/microm3 had residual cytochrome c oxidase (COX) activity. This defines the minimum amount of wild-type mtDNA molecules required to maintain COX activity in skeletal muscle and provides an explanation for the mosaic histochemical pattern seen in patients with mtDNA depletion syndrome.

MT Ser, a binary blue subdwarf

NASA Astrophysics Data System (ADS)

Shimanskii, V. V.; Borisov, N. V.; Sakhibullin, N. A.; Sheveleva, D. V.

2008-06-01

We have classified and determined the parameters of the evolved close binary MT Ser. Our moderate-resolution spectra covering various phases of the orbital period were taken with the 6-m telescope of the Special Astrophysical Observatory. The spectra of MT Ser freed from the contribution of the surrounding nebula Abell 41 contained no emission lines due to the reflection effect. The radial velocities measured from lines of different elements showed them to be constant on a time scale corresponding to the orbital period. At the same time, we find effects of broadening for the HeII absorption lines, due to the orbital motion of two hot stars of similar types. As a result, we classify MT Ser as a system with two blue subdwarfs after the common-envelope stage. We estimate the component masses and the distance to the object from the Doppler broadening of the HeII lines. We demonstrate that the age of the ambient nebula, Abell 41, is about 35 000 years.

Distant Mt. Fuji, Island of Honshu Japan

NASA Image and Video Library

1992-11-01

This distant view of Mt. Fuji, on the main home island of Honshu, Japan (34.0N, 139.0E) was taken from about 450 miles to the south. Evan at that great distance, the majestic and inspiring Mt. Fuji is still plainly visible and easily recognized as a world renowned symbol of Japan. The snow capped extinct volcano lies just a few miles south of Tokyo.

Leber Hereditary Optic Neuropathy: Exemplar of an mtDNA Disease.

PubMed

Wallace, Douglas C; Lott, Marie T

2017-01-01

The report in 1988 that Leber Hereditary Optic Neuropathy (LHON) was the product of mitochondrial DNA (mtDNA) mutations provided the first demonstration of the clinical relevance of inherited mtDNA variation. From LHON studies, the medical importance was demonstrated for the mtDNA showing its coding for the most important energy genes, its maternal inheritance, its high mutation rate, its presence in hundreds to thousands of copies per cell, its quantitatively segregation of biallelic genotypes during both mitosis and meiosis, its preferential effect on the most energetic tissues including the eye and brain, its wide range of functional polymorphisms that predispose to common diseases, and its accumulation of mutations within somatic tissues providing the aging clock. These features of mtDNA genetics, in combination with the genetics of the 1-2000 nuclear DNA (nDNA) coded mitochondrial genes, is not only explaining the genetics of LHON but also providing a model for understanding the complexity of many common diseases. With the maturation of LHON biology and genetics, novel animal models for complex disease have been developed and new therapeutic targets and strategies envisioned, both pharmacological and genetic. Multiple somatic gene therapy approaches are being developed for LHON which are applicable to other mtDNA diseases. Moreover, the unique cytoplasmic genetics of the mtDNA has permitted the first successful human germline gene therapy via spindle nDNA transfer from mtDNA mutant oocytes to enucleated normal mtDNA oocytes. Such LHON lessons are actively being applied to common ophthalmological diseases like glaucoma and neurological diseases like Parkinsonism.

Sedimentary and Volcanic Records of the Laschamp and Mono Lake Excursions from Australia and New Zealand

NASA Astrophysics Data System (ADS)

Ingham, E. M.; Roberts, A. P.; Turner, G. M.; Heslop, D.; Ronge, T.; Conway, C.; Leonard, G.; Townsend, D.; Tiedemann, R.; Lamy, F.; Calvert, A. T.

2014-12-01

Geomagnetic excursions are short-lived deviations of the geomagnetic field from the normal range of secular variation. Despite significant advances in geomagnetic excursion research over the past 20 years, fundamental questions remain concerning the typical duration and global morphology of excursional geomagnetic fields. To answer such questions, more high-resolution, chronologically well-constrained excursion records are required, particularly from the Southern Hemisphere. We present preliminary paleomagnetic records of the Laschamp (~41 ka) and Mono Lake (~35 ka) excursions from three marine sediment cores from the Bounty Trough, New Zealand margin, and complementary volcanic records of the Laschamp excursion from lavas of Mt Ruapehu, New Zealand. Relatively high sedimentation rates of 12 - 26 cm/kyr in the Bounty Trough during glacial periods allow identification of excursional field behavior at each of the studied core locations. Each core displays one or two excursional events, with rapid directional swings between stable normal polarity and reversed excursional directions, each associated with coincident relative paleointensity minima. These anomalous paleomagnetic directions are interpreted to represent the Laschamp and Mono Lake excursions, based on a combination of tephrochronology, radiocarbon dating, and cyclostratigraphy (defined from core-scanning X-ray fluorescence and magnetic susceptibility records). Beside these records, we present results from fourteen lava flows, on Mt Ruapehu, for which 40Ar-39Ar dating indicates ages of between 39 and 45 ka. The step heating 40Ar-39Ar experiments produced particularly flat age plateaus, with corresponding 2 s.d. errors mostly approaching 1 kyr. The youngest and oldest flows carry normal polarity magnetization, however six flows, dated between 41 and 43 ka, display transitional field characteristics. Three of these flows display a declination swing of around 180o, which coincides with a previously published

Mt. Etna: rationale and implementation of a Supersite

NASA Astrophysics Data System (ADS)

Puglisi, Giuseppe

2017-04-01

Mt. Etna is one of the most active volcanoes on Earth and, in the past few decades, has erupted virtually every year. The volcanism of Mt. Etna results from the interaction between magma ascent in the rather complex plumbing feeding system and the local tectonic regime controlled by the volcano edifice's eastern flank instability, whose driving conditions (e.g., structural setting, tectonic forces) and cause-effect relationships are not yet completely understood. At the surface, the combination of the two factors produces eruptions that might consist of either strongly explosive (e.g., 2002; 2011) and produce volcanic ash plumes likely to disrupt air traffic for hours to weeks (e.g., 5 January 2012), including powerful summit paroxysms in the 2012-2013 time span or lava flows capable of invading the populated sectors, that can threat human property and vital infrastructures. Mt. Etna presents many characteristics that make it prone to be a Geohazard Supersite. The volcano consists of an open-vent system characterised by continuous degassing from the volcano summit craters and frequent eruptive summit and flank eruptions. Eruptions can be of different kinds passing from violent short-lasting explosive events to long-lasting lava output, thus producing different kinds of impacts on the surrounding environment, and especially on the large number of people living around the volcano foot. Over time, the frequency and variety of Mt. Etna's eruptive activity have made the volcano one of the most well-studied and monitored worldwide. At Mt. Etna volcanic activity produces a wide spectrum of signals, spanning from seismic and geodetic to geochemical and radiometric signals, which are tracked in continuous and in real-and quasi-real time by the automatic multi-disciplinary monitoring systems deployed by INGV. The huge amount of ground-based collected data sets enforces the vision of Mt. Etna supersite as a Geohazard Supersite where applying the overarching criteria of the

High-quality mtDNA control region sequences from 680 individuals sampled across the Netherlands to establish a national forensic mtDNA reference database.

PubMed

Chaitanya, Lakshmi; van Oven, Mannis; Brauer, Silke; Zimmermann, Bettina; Huber, Gabriela; Xavier, Catarina; Parson, Walther; de Knijff, Peter; Kayser, Manfred

2016-03-01

The use of mitochondrial DNA (mtDNA) for maternal lineage identification often marks the last resort when investigating forensic and missing-person cases involving highly degraded biological materials. As with all comparative DNA testing, a match between evidence and reference sample requires a statistical interpretation, for which high-quality mtDNA population frequency data are crucial. Here, we determined, under high quality standards, the complete mtDNA control-region sequences of 680 individuals from across the Netherlands sampled at 54 sites, covering the entire country with 10 geographic sub-regions. The complete mtDNA control region (nucleotide positions 16,024-16,569 and 1-576) was amplified with two PCR primers and sequenced with ten different sequencing primers using the EMPOP protocol. Haplotype diversity of the entire sample set was very high at 99.63% and, accordingly, the random-match probability was 0.37%. No population substructure within the Netherlands was detected with our dataset. Phylogenetic analyses were performed to determine mtDNA haplogroups. Inclusion of these high-quality data in the EMPOP database (accession number: EMP00666) will improve its overall data content and geographic coverage in the interest of all EMPOP users worldwide. Moreover, this dataset will serve as (the start of) a national reference database for mtDNA applications in forensic and missing person casework in the Netherlands. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Petrographic and geochemical investigation of magma chamber processes beneath small Quaternary volcanic centers between Mt. Jefferson and Mt. Hood volcanoes, Cascade Range Volcanic Arc

NASA Astrophysics Data System (ADS)

Cunningham, E.; Cribb, J. W.

2017-12-01

The northern Oregon Cascade Range has been dominated by andesite to rhyodacite lavas at both Mt. Jefferson (Conrey, 1991) and at Mt. Hood (Cribb and Barton, 1996) during the Quaternary period. Eruptive sequences at both Mt. Hood and Mt. Jefferson have been attributed to open-system mama mixing (Kent et al., 2010) (Ferrell et al., 2015), and the narrow range of lavas erupted at both centers has been derived from repeated cycles of magma mixing-fractionation (Cribb and Barton, 1996). This research examines major and trace element geochemistry as well as the petrographic characteristics of Clear Lake Butte (CLB), Pinhead Butte (PB), and Olallie Butte (OB), all of which are located between Mt. Hood and Mt. Jefferson, and have ben active in the Quaternary period. The research investigates whether the same type of open-system magma mixing known to have occurred at Mt. Hood and Mt. Jefferson has also occurred at CLB, PB, or OB, or whether those systems were closed to mixing and dominated by fractional crystallization. One of the main goals of this project is to highlight the similarities and differences exhibited by neighboring magmatic systems of similar age, but different scale. Disequilibrium textures observed in thin sections from CLB, OB, and PB suggest open-system magma mixing is likely occurring beneath all three buttes. This petrographic evidence includes plagioclase and pyroxene zoning, embayed margins, sieving, and reaction rims. Major element oxide trends at all three buttes are consistent with fractional crystallization, but show narrow concentrations and non-overlapping compositions between PB, CLB, and OB. All three buttes are characterized by narrow ranges of incompatible and compatible trace element concentrations. CLB, PB, and OB all exhibit LREE enrichment and lack significant HFSE depletions, with PB exhibiting greatest enrichment in REE.

Optimized mtDNA Control Region Primer Extension Capture Analysis for Forensically Relevant Samples and Highly Compromised mtDNA of Different Age and Origin

PubMed Central

Eduardoff, Mayra; Xavier, Catarina; Strobl, Christina; Casas-Vargas, Andrea; Parson, Walther

2017-01-01

The analysis of mitochondrial DNA (mtDNA) has proven useful in forensic genetics and ancient DNA (aDNA) studies, where specimens are often highly compromised and DNA quality and quantity are low. In forensic genetics, the mtDNA control region (CR) is commonly sequenced using established Sanger-type Sequencing (STS) protocols involving fragment sizes down to approximately 150 base pairs (bp). Recent developments include Massively Parallel Sequencing (MPS) of (multiplex) PCR-generated libraries using the same amplicon sizes. Molecular genetic studies on archaeological remains that harbor more degraded aDNA have pioneered alternative approaches to target mtDNA, such as capture hybridization and primer extension capture (PEC) methods followed by MPS. These assays target smaller mtDNA fragment sizes (down to 50 bp or less), and have proven to be substantially more successful in obtaining useful mtDNA sequences from these samples compared to electrophoretic methods. Here, we present the modification and optimization of a PEC method, earlier developed for sequencing the Neanderthal mitochondrial genome, with forensic applications in mind. Our approach was designed for a more sensitive enrichment of the mtDNA CR in a single tube assay and short laboratory turnaround times, thus complying with forensic practices. We characterized the method using sheared, high quantity mtDNA (six samples), and tested challenging forensic samples (n = 2) as well as compromised solid tissue samples (n = 15) up to 8 kyrs of age. The PEC MPS method produced reliable and plausible mtDNA haplotypes that were useful in the forensic context. It yielded plausible data in samples that did not provide results with STS and other MPS techniques. We addressed the issue of contamination by including four generations of negative controls, and discuss the results in the forensic context. We finally offer perspectives for future research to enable the validation and accreditation of the PEC MPS method for

77 FR 64714 - Modification of Class E Airspace; Wolf Point, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-23

...-0569; Airspace Docket No. 12-ANM-17] Modification of Class E Airspace; Wolf Point, MT AGENCY: Federal... Wolf Point, MT. Controlled airspace is necessary to accommodate aircraft using Nondirectional Radio Beacon (NDB) standard instrument approach procedures at L M Clayton Airport, Wolf Point, MT. This...

MT-4 suppresses resistant ovarian cancer growth through targeting tubulin and HSP27.

PubMed

Pai, Hui Chen; Kumar, Sunil; Shen, Chien-Chang; Liou, Jing Ping; Pan, Shiow Lin; Teng, Che Ming

2015-01-01

In this study, the anticancer mechanisms of MT-4 were examined in A2780 and multidrug-resistant NCI-ADR/res human ovarian cancer cell lines. To evaluate the activity of MT-4, we performed in vitro cell viability and cell cycle assays and in vivo xenograft assays. Immunoblotting analysis was carried out to evaluate the effect of MT-4 on ovarian cancer. Tubulin polymerization was determined using a tubulin binding assay. MT-4 (2-Methoxy-5-[2-(3,4,5-trimethoxy-phenyl)-ethyl]-phenol), a derivative of moscatilin, can inhibit both sensitive A2780 and multidrug-resistant NCI-ADR/res cell growth and viability. MT-4 inhibited tubulin polymerization to induce G2/M arrest followed by caspase-mediated apoptosis. Further studies indicated that MT-4 is not a substrate of P-glycoprotein (p-gp). MT-4 also caused G2/M cell cycle arrest, accompanied by the upregulation of cyclin B, p-Thr161 Cdc2/p34, polo-like kinase 1 (PLK1), Aurora kinase B, and phospho-Ser10-histone H3 protein levels. In addition, we found that p38 MAPK pathway activation was involved in MT-4-induced apoptosis. Most importantly, MT-4 also decreased heat shock protein 27 expression and reduced its interaction with caspase-3, which inured cancer cells to chemotherapy resistance. Treatment of cells with SB203580 or overexpression of dominant negative (DN)-p38 or wild-type HSP27 reduced PARP cleavage caused by MT-4. MT-4 induced apoptosis through regulation of p38 and HSP27. Our xenograft models also show the in vivo efficacy of MT-4. MT-4 inhibited both A2780 and NCI-ADR/res cell growth in vitro and in vivo. These findings indicate that MT-4 could be a potential lead compound for the treatment of multidrug-resistant ovarian cancer.

76 FR 57633 - Amendment of Class E Airspace; Miles City, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-16

...-0515; Airspace Docket No. 11-ANM-11] Amendment of Class E Airspace; Miles City, MT AGENCY: Federal... Miles City, MT, to accommodate aircraft using a new Area Navigation (RNAV) Global Positioning System... proposed rulemaking to modify controlled airspace at Miles City, MT (76 FR 41725). Interested parties were...

Mt. St. Helens Memories.

ERIC Educational Resources Information Center

Sharp, Len

1992-01-01

Provides a personal account of one science teacher's participation in a teacher workshop in which teachers learned about volcanic development, types of eruption, geomorphology, plate tectonics, volcano monitoring, and hazards created by volcanoes by examining Mt. St. Helens. Provides a graphic identifying volcanoes active since 1975. (MDH)

Mt Agung (Bali) Eruption Plumes

Atmospheric Science Data Center

2018-05-23

article title:  Mt Agung (Bali) Eruption Plumes     View larger image ... 2017 (left) and calculated plume heights (right)   Volcanic eruptions can generate a significant amount of atmospheric aerosols ...

Space Radar Image of Central Java, Indonesia

NASA Image and Video Library

1999-04-15

The summits of two large volcanoes in Central Java, Indonesia are shown in the center of this radar image. Lava flows of different ages and surface roughness appear in shades of green and yellow surrounding the summit of Mt. Merbabu (mid-center) and Mt. Merapi (lower center). Mt. Merapi erupted on November 28, 1994 about six weeks after this image was taken. The eruption killed more than 60 people and forced the evacuation of more than 6,000 others. Thousands of other residents were put on alert due to the possibility of volcanic debris mudflows, called lahars, that threatened nearby towns. Mt. Merapi is located approximately 40 kilometers (25 miles) north of Yogyakarta, the capital of Central Java. The older volcano at the top of the image is unnamed. Lake Rawapening is the dark blue feature in the upper right. The light blue area southeast of the lake is the city of Salatiga. Directly south of Salatiga and southeast of Mt. Merapi is the city of Boyolali. Scientists are studying Mt. Merapi as part of the international "Decade Volcanoes" project, because of its recent activity and potential threat to local populations. The radar data are being used to identify and distinguish a variety of volcanic features. http://photojournal.jpl.nasa.gov/catalog/PIA01782

Incorporating Community Knowledge to Lahar Hazard Maps: Canton Buenos Aires Case Study, at Santa Ana (Ilamatepec) Volcano

NASA Astrophysics Data System (ADS)

Bajo, J. V.; Martinez-Hackert, B.; Polio, C.; Gutierrez, E.

2015-12-01

Santa Ana (Ilamatepec) Volcano is an active composite volcano located in the Apaneca Volcanic Field located in western part of El Salvador, Central America. The volcano is surrounded by rural communities in its proximal areas and the second (Santa Ana, 13 km) and fourth (Sonsosante, 15 km) largest cities of the country. On October 1st, 2005, the volcano erupted after months of increased activity. Following the eruption, volcanic mitigation projects were conducted in the region, but the communities had little or no input on them. This project consisted in the creation of lahar volcanic hazard map for the Canton Buanos Aires on the northern part of the volcano by incorporating the community's knowledge from prior events to model parameters and results. The work with the community consisted in several meetings where the community members recounted past events. They were asked to map the outcomes of those events using either a topographic map of the area, a Google Earth image, or a blank paper poster size. These maps have been used to identify hazard and vulnerable areas, and for model validation. These maps were presented to the communities and they accepted their results and the maps.

The Nitrate Transporter MtNPF6.8 (MtNRT1.3) Transports Abscisic Acid and Mediates Nitrate Regulation of Primary Root Growth in Medicago truncatula1[W

PubMed Central

Pellizzaro, Anthoni; Clochard, Thibault; Cukier, Caroline; Bourdin, Céline; Juchaux, Marjorie; Montrichard, Françoise; Thany, Steeve; Raymond, Valérie; Planchet, Elisabeth; Morère-Le Paven, Marie-Christine

2014-01-01

Elongation of the primary root during postgermination of Medicago truncatula seedlings is a multigenic trait that is responsive to exogenous nitrate. A quantitative genetic approach suggested the involvement of the nitrate transporter MtNPF6.8 (for Medicago truncatula NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER Family6.8) in the inhibition of primary root elongation by high exogenous nitrate. In this study, the inhibitory effect of nitrate on primary root elongation, via inhibition of elongation of root cortical cells, was abolished in npf6.8 knockdown lines. Accordingly, we propose that MtNPF6.8 mediates nitrate inhibitory effects on primary root growth in M. truncatula. pMtNPF6.8:GUS promoter-reporter gene fusion in Agrobacterium rhizogenes-generated transgenic roots showed the expression of MtNPF6.8 in the pericycle region of primary roots and lateral roots, and in lateral root primordia and tips. MtNPF6.8 expression was insensitive to auxin and was stimulated by abscisic acid (ABA), which restored the inhibitory effect of nitrate in npf6.8 knockdown lines. It is then proposed that ABA acts downstream of MtNPF6.8 in this nitrate signaling pathway. Furthermore, MtNPF6.8 was shown to transport ABA in Xenopus spp. oocytes, suggesting an additional role of MtNPF6.8 in ABA root-to-shoot translocation. 15NO3−-influx experiments showed that only the inducible component of the low-affinity transport system was affected in npf6.8 knockdown lines. This indicates that MtNPF6.8 is a major contributor to the inducible component of the low-affinity transport system. The short-term induction by nitrate of the expression of Nitrate Reductase1 (NR1) and NR2 (genes that encode two nitrate reductase isoforms) was greatly reduced in the npf6.8 knockdown lines, supporting a role of MtNPF6.8 in the primary nitrate response in M. truncatula. PMID:25367858

Adjusting MtDNA Quantification in Whole Blood for Peripheral Blood Platelet and Leukocyte Counts.

PubMed

Hurtado-Roca, Yamilee; Ledesma, Marta; Gonzalez-Lazaro, Monica; Moreno-Loshuertos, Raquel; Fernandez-Silva, Patricio; Enriquez, Jose Antonio; Laclaustra, Martin

2016-01-01

Alterations of mitochondrial DNA copy number (mtDNAcn) in the blood (mitochondrial to nuclear DNA ratio) appear associated with several systemic diseases, including primary mitochondrial disorders, carcinogenesis, and hematologic diseases. Measuring mtDNAcn in DNA extracted from whole blood (WB) instead of from peripheral blood mononuclear cells or buffy coat may yield different results due to mitochondrial DNA present in platelets. The aim of this work is to quantify the contribution of platelets to mtDNAcn in whole blood [mtDNAcn(WB)] and to propose a correction formula to estimate leukocytes' mtDNAcn [mtDNAcn(L)] from mtDNAcn(WB). Blood samples from 10 healthy adults were combined with platelet-enriched plasma and saline solution to produce artificial blood preparations. Aliquots of each sample were combined with five different platelet concentrations. In 46 of these blood preparations, mtDNAcn was measured by qPCR. MtDNAcn(WB) increased 1.07 (95%CI 0.86, 1.29; p<0.001) per 1000 platelets present in the preparation. We proved that leukocyte count should also be taken into account as mtDNAcn(WB) was inversely associated with leukocyte count; it increased 1.10 (95%CI 0.95, 1.25, p<0.001) per unit increase of the ratio between platelet and leukocyte counts. If hematological measurements are available, subtracting 1.10 the platelets/leukocyte ratio from mtDNAcn(WB) may serve as an estimation for mtDNAcn(L). Both platelet and leukocyte counts in the sample are important sources of variation if comparing mtDNAcn among groups of patients when mtDNAcn is measured in DNA extracted from whole blood. Not taking the platelet/leukocyte ratio into account in whole blood measurements, may lead to overestimation and misclassification if interpreted as leukocytes' mtDNAcn.

Ethidium bromide as a marker of mtDNA replication in living cells

NASA Astrophysics Data System (ADS)

Villa, Anna Maria; Fusi, Paola; Pastori, Valentina; Amicarelli, Giulia; Pozzi, Chiara; Adlerstein, Daniel; Doglia, Silvia Maria

2012-04-01

Mitochondrial DNA (mtDNA) in tumor cells was found to play an important role in maintaining the malignant phenotype. Using laser scanning confocal fluorescence microscopy (LSCFM) in a recent work, we reported a variable fluorescence intensity of ethidium bromide (EB) in mitochondria nucleoids of living carcinoma cells. Since when EB is bound to nucleic acids its fluorescence is intensified; a higher EB fluorescence intensity could reflect a higher DNA accessibility to EB, suggesting a higher mtDNA replication activity. To prove this hypothesis, in the present work we studied, by LSCFM, the EB fluorescence in mitochondria nucleoids of living neuroblastoma cells, a model system in which differentiation affects the level of mtDNA replication. A drastic decrease of fluorescence was observed after differentiation. To correlate EB fluorescence intensity to the mtDNA replication state, we evaluated the mtDNA nascent strands content by ligation-mediated real-time PCR, and we found a halved amount of replicating mtDNA molecules in differentiating cells. A similar result was obtained by BrdU incorporation. These results indicate that the low EB fluorescence of nucleoids in differentiated cells is correlated to a low content of replicating mtDNA, suggesting that EB may be used as a marker of mtDNA replication in living cells.

Inattention blindness to motion in area MT

PubMed Central

Harrison, Ian T.; Weiner, Katherine F.; Ghose, Geoffrey M.

2013-01-01

Subjects naturally form and use expectations to solve familiar tasks, but the accuracy of these expectations, and the neuronal mechanisms by which these expectations enhance behavior, are unclear. We trained animals (Macaca mulatta) in a challenging perceptual task in which the likelihood of a very brief pulse of motion was consistently modulated over time and space. Pulse likelihood had dramatic effects on behavior: unexpected pulses were nearly invisible to the animals. To examine the neuronal basis of such inattention blindness, we recorded from single neurons in the middle temporal (MT) area, an area related to motion perception. Fluctuations in how reliably MT neurons both signaled stimulus events and predicted behavioral choices were highly correlated with changes in performance over the course of individual trials. A simple neuronal pooling model reveals the dramatic behavioral effects of attention in this task can be completely explained by changes in the reliability of a small number of MT neurons. PMID:23658178

Modeling the Geologic History of Mt. Sharp

NASA Technical Reports Server (NTRS)

Pascuzzo, A.; Allen, C.

2015-01-01

Gale is an approximately 155 km diameter crater located on the martian dichotomy boundary (5 deg S 138 deg E). Gale is estimated to have formed 3.8 - 3.5 Gya, in the late Noachian or early Hesperian. Mt. Sharp, at the center of Gale Crater, is a crescent shaped sedimentary mound that rises 5.2 km above the crater floor. Gale is one of the few craters that has a peak reaching higher than the rim of the crater wall. The Curiosity rover is currently fighting to find its way across a dune field at the northwest base of the mound searching for evidence of habitability. This study used orbital images and topographic data to refine models for the geologic history of Mt. Sharp by analyzing its morphological features. In addition, it assessed the possibility of a peak ring in Gale. The presence of a peak ring can offer important information to how Mt. Sharp was formed and eroded early in Gale's history.

[MT-45--a dangerous and potentially ototoxic internet drug].

PubMed

Lindeman, Erik; Bäckberg, Matilda; Personne, Mark; Helander, Anders

2014-09-11

During the last years several synthetic opioids have been introduced on Internet sites selling new psychoactive substances (NPS). One of these, called MT-45, a piperazine derivative originally synthesized as a therapeutic drug candidate in the 1970s, has recently been detected in 21 deaths, according to unpublished data from the Swedish National Board of Forensic Medicine. We present clinical data from 12 analytically confirmed hospital cases of MT-45 poisoning. The cases demonstrate that MT-45, like other opioids, can induce potentially life threatening respiratory depression and loss of consciousness in users and that symptoms are usually reversed by standard doses of the opioid receptor antagonist naloxone. Significant auditory symptoms with transient tinnitus and hearing loss occurred in two cases and a pronounced sensorineural hearing loss still present at two weeks follow-up in one case. This indicates that MT-45 may be an ototoxic substance, illustrating the ubiquitous risk of unintended adverse effects NPSs pose to users.

Mt. St. Helens

NASA Image and Video Library

2001-10-22

This 3-D anaglyph image of Mt. St. Helens volcano combines the nadir-looking and back-looking band 3 images of ASTER. To view the image in stereo, you will need blue-red glasses. Make sure to look through the red lens with your left eye. This ASTER image of Mt. St. Helens volcano in Washington was acquired on August 8, 2000 and covers an area of 37 by 51 km. Mount Saint Helens, a volcano in the Cascade Range of southwestern Washington that had been dormant since 1857, began to show signs of renewed activity in early 1980. On 18 May 1980, it erupted with such violence that the top of the mountain was blown off, spewing a cloud of ash and gases that rose to an altitude of 19 kilometers. The blast killed about 60 people and destroyed all life in an area of some 180 square kilometers (some 70 square miles), while a much larger area was covered with ash and debris. It continues to spit forth ash and steam intermittently. As a result of the eruption, the mountain's elevation decreased from 2,950 meters to 2,549 meters. The image is centered at 46.2 degrees north latitude, 122.2 degrees west longitude. http://photojournal.jpl.nasa.gov/catalog/PIA11160

Myopathic mtDNA Depletion Syndrome Due to Mutation in TK2 Gene.

PubMed

Martín-Hernández, Elena; García-Silva, María Teresa; Quijada-Fraile, Pilar; Rodríguez-García, María Elena; Rivera, Henry; Hernández-Laín, Aurelio; Coca-Robinot, David; Fernández-Toral, Joaquín; Arenas, Joaquín; Martín, Miguel A; Martínez-Azorín, Francisco

2017-01-01

Whole-exome sequencing was used to identify the disease gene(s) in a Spanish girl with failure to thrive, muscle weakness, mild facial weakness, elevated creatine kinase, deficiency of mitochondrial complex III and depletion of mtDNA. With whole-exome sequencing data, it was possible to get the whole mtDNA sequencing and discard any pathogenic variant in this genome. The analysis of whole exome uncovered a homozygous pathogenic mutation in thymidine kinase 2 gene ( TK2; NM_004614.4:c.323 C>T, p.T108M). TK2 mutations have been identified mainly in patients with the myopathic form of mtDNA depletion syndromes. This patient presents an atypical TK2-related myopathic form of mtDNA depletion syndromes, because despite having a very low content of mtDNA (<20%), she presents a slower and less severe evolution of the disease. In conclusion, our data confirm the role of TK2 gene in mtDNA depletion syndromes and expanded the phenotypic spectrum.

MtDNA depleted PC3 cells exhibit Warburg effect and cancer stem cell features

PubMed Central

Li, Xiaoran; Zhong, Yali; Lu, Jie; Axcrona, Karol; Eide, Lars; Syljuåsen, Randi G.; Peng, Qian; Wang, Junbai; Zhang, Hongquan; Goscinski, Mariusz Adam; Kvalheim, Gunnar; Nesland, Jahn M.; Suo, Zhenhe

2016-01-01

Reducing mtDNA content was considered as a critical step in the metabolism restructuring for cell stemness restoration and further neoplastic development. However, the connections between mtDNA depletion and metabolism reprograming-based cancer cell stemness in prostate cancers are still lack of studies. Here, we demonstrated that human CRPC cell line PC3 tolerated high concentration of the mtDNA replication inhibitor ethidium bromide (EtBr) and the mtDNA depletion triggered a universal metabolic remodeling process. Failure in completing that process caused lethal consequences. The mtDNA depleted (MtDP) PC3 cells could be steadily maintained in the special medium in slow cycling status. The MtDP PC3 cells contained immature mitochondria and exhibited Warburg effect. Furthermore, the MtDP PC3 cells were resistant to therapeutic treatments and contained greater cancer stem cell-like subpopulations: CD44+, ABCG2+, side-population and ALDHbright. In conclusion, these results highlight the association of mtDNA content, mitochondrial function and cancer cell stemness features. PMID:27248169

A reduced number of mtSNPs saturates mitochondrial DNA haplotype diversity of worldwide population groups.

PubMed

Salas, Antonio; Amigo, Jorge

2010-05-03

The high levels of variation characterising the mitochondrial DNA (mtDNA) molecule are due ultimately to its high average mutation rate; moreover, mtDNA variation is deeply structured in different populations and ethnic groups. There is growing interest in selecting a reduced number of mtDNA single nucleotide polymorphisms (mtSNPs) that account for the maximum level of discrimination power in a given population. Applications of the selected mtSNP panel range from anthropologic and medical studies to forensic genetic casework. This study proposes a new simulation-based method that explores the ability of different mtSNP panels to yield the maximum levels of discrimination power. The method explores subsets of mtSNPs of different sizes randomly chosen from a preselected panel of mtSNPs based on frequency. More than 2,000 complete genomes representing three main continental human population groups (Africa, Europe, and Asia) and two admixed populations ("African-Americans" and "Hispanics") were collected from GenBank and the literature, and were used as training sets. Haplotype diversity was measured for each combination of mtSNP and compared with existing mtSNP panels available in the literature. The data indicates that only a reduced number of mtSNPs ranging from six to 22 are needed to account for 95% of the maximum haplotype diversity of a given population sample. However, only a small proportion of the best mtSNPs are shared between populations, indicating that there is not a perfect set of "universal" mtSNPs suitable for all population contexts. The discrimination power provided by these mtSNPs is much higher than the power of the mtSNP panels proposed in the literature to date. Some mtSNP combinations also yield high diversity values in admixed populations. The proposed computational approach for exploring combinations of mtSNPs that optimise the discrimination power of a given set of mtSNPs is more efficient than previous empirical approaches. In contrast to

A Reduced Number of mtSNPs Saturates Mitochondrial DNA Haplotype Diversity of Worldwide Population Groups

PubMed Central

Salas, Antonio; Amigo, Jorge

2010-01-01

Background The high levels of variation characterising the mitochondrial DNA (mtDNA) molecule are due ultimately to its high average mutation rate; moreover, mtDNA variation is deeply structured in different populations and ethnic groups. There is growing interest in selecting a reduced number of mtDNA single nucleotide polymorphisms (mtSNPs) that account for the maximum level of discrimination power in a given population. Applications of the selected mtSNP panel range from anthropologic and medical studies to forensic genetic casework. Methodology/Principal Findings This study proposes a new simulation-based method that explores the ability of different mtSNP panels to yield the maximum levels of discrimination power. The method explores subsets of mtSNPs of different sizes randomly chosen from a preselected panel of mtSNPs based on frequency. More than 2,000 complete genomes representing three main continental human population groups (Africa, Europe, and Asia) and two admixed populations (“African-Americans” and “Hispanics”) were collected from GenBank and the literature, and were used as training sets. Haplotype diversity was measured for each combination of mtSNP and compared with existing mtSNP panels available in the literature. The data indicates that only a reduced number of mtSNPs ranging from six to 22 are needed to account for 95% of the maximum haplotype diversity of a given population sample. However, only a small proportion of the best mtSNPs are shared between populations, indicating that there is not a perfect set of “universal” mtSNPs suitable for all population contexts. The discrimination power provided by these mtSNPs is much higher than the power of the mtSNP panels proposed in the literature to date. Some mtSNP combinations also yield high diversity values in admixed populations. Conclusions/Significance The proposed computational approach for exploring combinations of mtSNPs that optimise the discrimination power of a given set of

Extensive paternal mtDNA leakage in natural populations of Drosophila melanogaster.

PubMed

Nunes, Maria D S; Dolezal, Marlies; Schlötterer, Christian

2013-04-01

Strict maternal inheritance is considered a hallmark of animal mtDNA. Although recent reports suggest that paternal leakage occurs in a broad range of species, it is still considered an exceptionally rare event. To evaluate the impact of paternal leakage on the evolution of mtDNA, it is essential to reliably estimate the frequency of paternal leakage in natural populations. Using allele-specific real-time quantitative PCR (RT-qPCR), we show that heteroplasmy is common in natural populations with at least 14% of the individuals carrying multiple mitochondrial haplotypes. However, the average frequency of the minor mtDNA haplotype is low (0.8%), which suggests that this pervasive heteroplasmy has not been noticed before due to a lack of power in sequencing surveys. Based on the distribution of mtDNA haplotypes in the offspring of heteroplasmic mothers, we found no evidence for strong selection against one of the haplotypes. We estimated that the rate of paternal leakage is 6% and that at least 100 generations are required for complete sorting of mtDNA haplotypes. Despite the high proportion of heteroplasmic individuals in natural populations, we found no evidence for recombination between mtDNA molecules, suggesting that either recombination is rare or recombinant haplotypes are counter-selected. Our results indicate that evolutionary studies using mtDNA as a marker might be biased by paternal leakage in this species. © 2013 Blackwell Publishing Ltd.

77 FR 41939 - Proposed Establishment of Class E Airspace; Deer Lodge, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-17

...-0379; Airspace Docket No. 12-ANM-7 Proposed Establishment of Class E Airspace; Deer Lodge, MT AGENCY... action proposes to establish Class E airspace at Deer Lodge-City-County Airport, Deer Lodge, MT... System (GPS) standard instrument approach procedures at Deer Lodge-City-County Airport, Deer Lodge, MT...

Regulation of bone mass through pineal-derived melatonin-MT2 receptor pathway.

PubMed

Sharan, Kunal; Lewis, Kirsty; Furukawa, Takahisa; Yadav, Vijay K

2017-09-01

Tryptophan, an essential amino acid through a series of enzymatic reactions gives rise to various metabolites, viz. serotonin and melatonin, that regulate distinct biological functions. We show here that tryptophan metabolism in the pineal gland favors bone mass accrual through production of melatonin, a pineal-derived neurohormone. Pineal gland-specific deletion of Tph1, the enzyme that catalyzes the first step in the melatonin biosynthesis lead to a decrease in melatonin levels and a low bone mass due to an isolated decrease in bone formation while bone resorption parameters remained unaffected. Skeletal analysis of the mice deficient in MT1 or MT2 melatonin receptors showed a low bone mass in MT2-/- mice while MT1-/- mice had a normal bone mass compared to the WT mice. This low bone mass in the MT2-/- mice was due to an isolated decrease in osteoblast numbers and bone formation. In vitro assays of the osteoblast cultures derived from the MT1-/- and MT2-/- mice showed a cell intrinsic defect in the proliferation, differentiation and mineralization abilities of MT2-/- osteoblasts compared to WT counterparts, and the mutant cells did not respond to melatonin addition. Finally, we demonstrate that daily oral administration of melatonin can increase bone accrual during growth and can cure ovariectomy-induced structural and functional degeneration of bone by specifically increasing bone formation. By identifying pineal-derived melatonin as a regulator of bone mass through MT2 receptors, this study expands the role played by tryptophan derivatives in the regulation of bone mass and underscores its therapeutic relevance in postmenopausal osteoporosis. © 2017 The Authors. Journal of Pineal Research Published by John Wiley & Sons Ltd.

mtDNA mutation C1494T, haplogroup A, and hearing loss in Chinese

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang Chengye; Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, Kunming 650091; Graduate University of the Chinese Academy of Sciences, Beijing 100039

2006-09-22

Mutation C1494T in mitochondrial 12S rRNA gene was recently reported in two large Chinese families with aminoglycoside-induced and nonsyndromic hearing loss (AINHL) and was claimed to be pathogenic. This mutation, however, was first reported in a sample from central China in our previous study that was aimed to reconstruct East Asian mtDNA phylogeny. All these three mtDNAs formed a subclade defined by mutation C1494T in mtDNA haplogroup A. It thus seems that mutation C1494T is a haplogroup A-associated mutation and this matrilineal background may contribute a high risk for the penetrance of mutation C1494T in Chinese with AINHL. To testmore » this hypothesis, we first genotyped mutation C1494T in 553 unrelated individuals from three regional Chinese populations and performed an extensive search for published complete or near-complete mtDNA data sets (>3000 mtDNAs), we then screened the C1494T mutation in 111 mtDNAs with haplogroup A status that were identified from 1823 subjects across China. The search for published mtDNA data sets revealed no other mtDNA besides the above-mentioned three carrying mutation C1494T. None of the 553 randomly selected individuals and the 111 haplogroup A mtDNAs was found to bear this mutation. Therefore, our results suggest that C1494T is a very rare event. The mtDNA haplogroup A background in general is unlikely to play an active role in the penetrance of mutation C1494T in AINHL.« less

78 FR 52112 - Proposed Amendment of Class E Airspace; Cut Bank, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-22

...-0664; Airspace Docket No. 13-ANM-22] Proposed Amendment of Class E Airspace; Cut Bank, MT AGENCY... action proposes to modify Class E airspace at Cut Bank Municipal Airport, Cut Bank, MT. Controlled... from 700/1,200 feet above the surface at Cut Bank Municipal Airport, Cut Bank, MT. Controlled airspace...

[Aging affects early stage direction selectivity of MT cells in rhesus monkeys].

PubMed

Liang, Zhen; Chen, Yue-Ming; Meng, Xue; Wang, Yi; Zhou, Bao-Zhuo; Xie, Ying-Ying; He, Wen-Sheng

2012-10-01

The middle temporal area (MT/V5) plays an important role in motion processing. Neurons in this area have a strongly selective response to the moving direction of objects and as such, the selectivity of MT neurons was proposed to be a neural mechanism for the perception of motion. Our previous studies have found degradation in direction selectivity of MT neurons in old monkeys, but this direction selectivity was calculated during the whole response time and the results were not able to uncover the mechanism of motion perception over a time course. Furthermore, experiments have found that direction selectivity was enhanced by attention at a later stage. Therefore, the response should be excluded in experiments with anesthesia. To further characterize the neural mechanism over a time course, we investigated the age-related changes of direction selectivity in the early stage by comparing the proportions of direction selective MT cells in old and young macaque monkeys using in vivo single-cell recording techniques. Our results show that the proportion of early-stage-direction-selective cells is lower in old monkeys than in young monkeys, and that the early stage direction bias (esDB) of old MT cells decreased relative to young MT cells. Furthermore, the proportion of MT cells having strong early stage direction selectivity in old monkeys was decreased. Accordingly, the functional degradation in the early stage of MT cells may mediate perceptual declines of old primates in visual motion tasks.

mtDNA Mutations and Their Role in Aging, Diseases and Forensic Sciences

PubMed Central

Zapico, Sara C.; Ubelaker, Douglas H.

2013-01-01

Mitochondria are independent organelles with their own DNA. As a primary function, mitochondria produce the energy for the cell through Oxidative Phosphorylation (OXPHOS) in the Electron Transport Chain (ETC). One of the toxic products of this process is Reactive Oxygen Species (ROS), which can induce oxidative damage in macromolecules like lipids, proteins and DNA. Mitochondrial DNA (mtDNA) is less protected and has fewer reparation mechanisms than nuclear DNA (nDNA), and as such is more exposed to oxidative, mutation-inducing damage. This review analyzes the causes and consequences of mtDNA mutations and their relationship with the aging process. Neurodegenerative diseases, related with the aging, are consequences of mtDNA mutations resulting in a decrease in mitochondrial function. Also described are “mitochondrial diseases”, pathologies produced by mtDNA mutations and whose symptoms are related with mitochondrial dysfunction. Finally, mtDNA haplogroups are defined in this review; these groups are important for determination of geographical origin of an individual. Additionally, different haplogroups exhibit variably longevity and risk of certain diseases. mtDNA mutations in aging and haplogroups are of special interest to forensic science research. Therefore this review will help to clarify the key role of mtDNA mutations in these processes and support further research in this area. PMID:24307969

Exercise-induced mitochondrial p53 repairs mtDNA mutations in mutator mice.

PubMed

Safdar, Adeel; Khrapko, Konstantin; Flynn, James M; Saleem, Ayesha; De Lisio, Michael; Johnston, Adam P W; Kratysberg, Yevgenya; Samjoo, Imtiaz A; Kitaoka, Yu; Ogborn, Daniel I; Little, Jonathan P; Raha, Sandeep; Parise, Gianni; Akhtar, Mahmood; Hettinga, Bart P; Rowe, Glenn C; Arany, Zoltan; Prolla, Tomas A; Tarnopolsky, Mark A

2016-01-01

Human genetic disorders and transgenic mouse models have shown that mitochondrial DNA (mtDNA) mutations and telomere dysfunction instigate the aging process. Epidemiologically, exercise is associated with greater life expectancy and reduced risk of chronic diseases. While the beneficial effects of exercise are well established, the molecular mechanisms instigating these observations remain unclear. Endurance exercise reduces mtDNA mutation burden, alleviates multisystem pathology, and increases lifespan of the mutator mice, with proofreading deficient mitochondrial polymerase gamma (POLG1). We report evidence for a POLG1-independent mtDNA repair pathway mediated by exercise, a surprising notion as POLG1 is canonically considered to be the sole mtDNA repair enzyme. Here, we show that the tumor suppressor protein p53 translocates to mitochondria and facilitates mtDNA mutation repair and mitochondrial biogenesis in response to endurance exercise. Indeed, in mutator mice with muscle-specific deletion of p53, exercise failed to prevent mtDNA mutations, induce mitochondrial biogenesis, preserve mitochondrial morphology, reverse sarcopenia, or mitigate premature mortality. Our data establish a new role for p53 in exercise-mediated maintenance of the mtDNA genome and present mitochondrially targeted p53 as a novel therapeutic modality for diseases of mitochondrial etiology.

MtSWEET11, a Nodule-Specific Sucrose Transporter of Medicago truncatula

DOE PAGES

Kryvoruchko, Igor S.; Sinharoy, Senjuti; Torres-Jerez, Ivone; ...

2016-03-28

Optimization of nitrogen fixation by rhizobia in legumes is a key area of research for sustainable agriculture. Symbiotic nitrogen fixation (SNF) occurs in specialized organs called nodules and depends on a steady supply of carbon to both plant and bacterial cells. Here we report the functional characterization of a nodule-specific Suc transporter, MtSWEET11 from Medicago truncatula. MtSWEET11 belongs to a clade of plant SWEET proteins that are capable of transporting Suc and play critical roles in pathogen susceptibility. When expressed in mammalian cells, MtSWEET11 transported sucrose (Suc) but not glucose (Glc). The MtSWEET11 gene was found to be expressed inmore » infected root hair cells, and in the meristem, invasion zone, and vasculature of nodules. Expression of an MtSWEET11-GFP fusion protein in nodules resulted in green fluorescence associated with the plasma membrane of uninfected cells and infection thread and symbiosome membranes of infected cells. Two independent Tnt1-insertion sweet11 mutants were uncompromised in SNF. Furthermore, although MtSWEET11 appears to be involved in Suc distribution within nodules, it is not crucial for SNF, probably because other Suc transporters can fulfill its role(s).« less

75 FR 30367 - North Mt. Baker-Snoqualmie Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-01

... DEPARTMENT OF AGRICULTURE Forest Service North Mt. Baker-Snoqualmie Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The North Mt. Baker-Snoqualmie (MBS... meeting to: (1) Provide an orientation about Title II and the Federal Resource Advisory Committee; (2...

Development of forensic-quality full mtGenome haplotypes: success rates with low template specimens.

PubMed

Just, Rebecca S; Scheible, Melissa K; Fast, Spence A; Sturk-Andreaggi, Kimberly; Higginbotham, Jennifer L; Lyons, Elizabeth A; Bush, Jocelyn M; Peck, Michelle A; Ring, Joseph D; Diegoli, Toni M; Röck, Alexander W; Huber, Gabriela E; Nagl, Simone; Strobl, Christina; Zimmermann, Bettina; Parson, Walther; Irwin, Jodi A

2014-05-01

Forensic mitochondrial DNA (mtDNA) testing requires appropriate, high quality reference population data for estimating the rarity of questioned haplotypes and, in turn, the strength of the mtDNA evidence. Available reference databases (SWGDAM, EMPOP) currently include information from the mtDNA control region; however, novel methods that quickly and easily recover mtDNA coding region data are becoming increasingly available. Though these assays promise to both facilitate the acquisition of mitochondrial genome (mtGenome) data and maximize the general utility of mtDNA testing in forensics, the appropriate reference data and database tools required for their routine application in forensic casework are lacking. To address this deficiency, we have undertaken an effort to: (1) increase the large-scale availability of high-quality entire mtGenome reference population data, and (2) improve the information technology infrastructure required to access/search mtGenome data and employ them in forensic casework. Here, we describe the application of a data generation and analysis workflow to the development of more than 400 complete, forensic-quality mtGenomes from low DNA quantity blood serum specimens as part of a U.S. National Institute of Justice funded reference population databasing initiative. We discuss the minor modifications made to a published mtGenome Sanger sequencing protocol to maintain a high rate of throughput while minimizing manual reprocessing with these low template samples. The successful use of this semi-automated strategy on forensic-like samples provides practical insight into the feasibility of producing complete mtGenome data in a routine casework environment, and demonstrates that large (>2kb) mtDNA fragments can regularly be recovered from high quality but very low DNA quantity specimens. Further, the detailed empirical data we provide on the amplification success rates across a range of DNA input quantities will be useful moving forward as PCR

Estimates of Continental Ancestry Vary Widely among Individuals with the Same mtDNA Haplogroup

PubMed Central

Emery, Leslie S.; Magnaye, Kevin M.; Bigham, Abigail W.; Akey, Joshua M.; Bamshad, Michael J.

2015-01-01

The association between a geographical region and an mtDNA haplogroup(s) has provided the basis for using mtDNA haplogroups to infer an individual’s place of origin and genetic ancestry. Although it is well known that ancestry inferences using mtDNA haplogroups and those using genome-wide markers are frequently discrepant, little empirical information exists on the magnitude and scope of such discrepancies between multiple mtDNA haplogroups and worldwide populations. We compared genetic-ancestry inferences made by mtDNA-haplogroup membership to those made by autosomal SNPs in ∼940 samples of the Human Genome Diversity Panel and recently admixed populations from the 1000 Genomes Project. Continental-ancestry proportions often varied widely among individuals sharing the same mtDNA haplogroup. For only half of mtDNA haplogroups did the highest average continental-ancestry proportion match the highest continental-ancestry proportion of a majority of individuals with that haplogroup. Prediction of an individual’s mtDNA haplogroup from his or her continental-ancestry proportions was often incorrect. Collectively, these results indicate that for most individuals in the worldwide populations sampled, mtDNA-haplogroup membership provides limited information about either continental ancestry or continental region of origin. PMID:25620206

ER-mitochondria contacts couple mtDNA synthesis with mitochondrial division in human cells.

PubMed

Lewis, Samantha C; Uchiyama, Lauren F; Nunnari, Jodi

2016-07-15

Mitochondrial DNA (mtDNA) encodes RNAs and proteins critical for cell function. In human cells, hundreds to thousands of mtDNA copies are replicated asynchronously, packaged into protein-DNA nucleoids, and distributed within a dynamic mitochondrial network. The mechanisms that govern how nucleoids are chosen for replication and distribution are not understood. Mitochondrial distribution depends on division, which occurs at endoplasmic reticulum (ER)-mitochondria contact sites. These sites were spatially linked to a subset of nucleoids selectively marked by mtDNA polymerase and engaged in mtDNA synthesis--events that occurred upstream of mitochondrial constriction and division machine assembly. Our data suggest that ER tubules proximal to nucleoids are necessary but not sufficient for mtDNA synthesis. Thus, ER-mitochondria contacts coordinate licensing of mtDNA synthesis with division to distribute newly replicated nucleoids to daughter mitochondria. Copyright © 2016, American Association for the Advancement of Science.

Re-examining overlap between tactile and visual motion responses within hMT+ and STS

PubMed Central

Jiang, Fang; Beauchamp, Michael S.; Fine, Ione

2015-01-01

Here we examine overlap between tactile and visual motion BOLD responses within the human MT+ complex. Although several studies have reported tactile responses overlapping with hMT+, many used group average analyses, leaving it unclear whether these responses were restricted to sub-regions of hMT+. Moreover, previous studies either employed a tactile task or passive stimulation, leaving it unclear whether or not tactile responses in hMT+ are simply the consequence of visual imagery. Here we carried out a replication of one of the classic papers finding tactile responses in hMT+ (Hagen et al. 2002). We mapped MT and MST in individual subjects using visual field localizers. We then examined responses to tactile motion on the arm, either presented passively or in the presence of a visual task performed at fixation designed to minimize visualization of the concurrent tactile stimulation. To our surprise, without a visual task, we found only weak tactile motion responses in MT (6% of voxels showing tactile responses) and MST (2% of voxels). With an unrelated visual task designed to withdraw attention from the tactile modality, responses in MST reduced to almost nothing (<1% regions). Consistent with previous results, we did observe tactile responses in STS regions superior and anterior to hMT+. Despite the lack of individual overlap, group averaged responses produced strong spurious overlap between tactile and visual motion responses within hMT+ that resembled those observed in previous studies. The weak nature of tactile responses in hMT+ (and their abolition by withdrawal of attention) suggests that hMT+ may not serve as a supramodal motion processing module. PMID:26123373

mtDNA sequence diversity of Hazara ethnic group from Pakistan.

PubMed

Rakha, Allah; Fatima; Peng, Min-Sheng; Adan, Atif; Bi, Rui; Yasmin, Memona; Yao, Yong-Gang

2017-09-01

The present study was undertaken to investigate mitochondrial DNA (mtDNA) control region sequences of Hazaras from Pakistan, so as to generate mtDNA reference database for forensic casework in Pakistan and to analyze phylogenetic relationship of this particular ethnic group with geographically proximal populations. Complete mtDNA control region (nt 16024-576) sequences were generated through Sanger Sequencing for 319 Hazara individuals from Quetta, Baluchistan. The population sample set showed a total of 189 distinct haplotypes, belonging mainly to West Eurasian (51.72%), East & Southeast Asian (29.78%) and South Asian (18.50%) haplogroups. Compared with other populations from Pakistan, the Hazara population had a relatively high haplotype diversity (0.9945) and a lower random match probability (0.0085). The dataset has been incorporated into EMPOP database under accession number EMP00680. The data herein comprises the largest, and likely most thoroughly examined, control region mtDNA dataset from Hazaras of Pakistan. Copyright © 2017 Elsevier B.V. All rights reserved.

76 FR 19281 - Proposed Amendment of Class E Airspace; Bozeman, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-07

... Instrument Landing System (ILS) Localizer (LOC) standard instrument approach procedures at the airport. The... extending upward from 700 feet or more above the surface of the earth. * * * * * ANM MT E5 Bozeman, MT...

African-American mitochondrial DNAs often match mtDNAs found in multiple African ethnic groups

PubMed Central

Ely, Bert; Wilson, Jamie Lee; Jackson, Fatimah; Jackson, Bruce A

2006-01-01

Background Mitochondrial DNA (mtDNA) haplotypes have become popular tools for tracing maternal ancestry, and several companies offer this service to the general public. Numerous studies have demonstrated that human mtDNA haplotypes can be used with confidence to identify the continent where the haplotype originated. Ideally, mtDNA haplotypes could also be used to identify a particular country or ethnic group from which the maternal ancestor emanated. However, the geographic distribution of mtDNA haplotypes is greatly influenced by the movement of both individuals and population groups. Consequently, common mtDNA haplotypes are shared among multiple ethnic groups. We have studied the distribution of mtDNA haplotypes among West African ethnic groups to determine how often mtDNA haplotypes can be used to reconnect Americans of African descent to a country or ethnic group of a maternal African ancestor. The nucleotide sequence of the mtDNA hypervariable segment I (HVS-I) usually provides sufficient information to assign a particular mtDNA to the proper haplogroup, and it contains most of the variation that is available to distinguish a particular mtDNA haplotype from closely related haplotypes. In this study, samples of general African-American and specific Gullah/Geechee HVS-I haplotypes were compared with two databases of HVS-I haplotypes from sub-Saharan Africa, and the incidence of perfect matches recorded for each sample. Results When two independent African-American samples were analyzed, more than half of the sampled HVS-I mtDNA haplotypes exactly matched common haplotypes that were shared among multiple African ethnic groups. Another 40% did not match any sequence in the database, and fewer than 10% were an exact match to a sequence from a single African ethnic group. Differences in the regional distribution of haplotypes were observed in the African database, and the African-American haplotypes were more likely to match haplotypes found in ethnic groups from

75 FR 41075 - Amendment of Class E Airspace; Bozeman, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-15

...-1220; Airspace Docket No. 09-ANM-30] Amendment of Class E Airspace; Bozeman, MT AGENCY: Federal Aviation Administration (FAA), DOT. ACTION: Final rule. SUMMARY: This action will amend Class E airspace at... proposed rulemaking to amend Class E airspace at Bozeman, MT (75 FR 20321). Interested parties were invited...

Mt. Kilimanjaro expedition in earth science education

NASA Astrophysics Data System (ADS)

Sparrow, Elena; Yoshikawa, Kenji; Narita, Kenji; Brettenny, Mark; Yule, Sheila; O'Toole, Michael; Brettenny, Rogeline

2010-05-01

Mt. Kilimanjaro, Africa's highest mountain is 5,895 meters above sea level and is located 330 km south of the equator in Tanzania. In 1976 glaciers covered most of Mt. Kilimanjaro's summit; however in 2000, an estimated eighty percent of the ice cap has disappeared since the last thorough survey done in 1912. There is increased scientific interest in Mt. Kilimanjaro with the increase in global and African average temperatures. A team of college and pre-college school students from Tanzania, South Africa and Kenya, teachers from South Africa and the United States, and scientists from the University of Alaska Fairbanks in the United States and Akita University in Japan, climbed to the summit of Mt Kilimanjaro in October 2009. They were accompanied by guides, porters, two expedition guests, and a videographer. This expedition was part of the GLOBE Seasons and Biomes Earth System Science Project and the GLOBE Africa science education initiative, exploring and contributing to climate change studies. Students learned about earth science experientially by observing their physical and biological surroundings, making soil and air temperature measurements, participating in discussions, journaling their experience, and posing research questions. The international trekkers noted the change in the biomes as the altitude, temperature and conditions changed, from cultivated lands, to rain forest, heath zone, moorland, alpine desert, and summit. They also discovered permafrost, but not at the summit as expected. Rather, it was where the mountain was not covered by a glacier and thus more exposed to low extreme temperatures. This was the first report of permafrost on Mt. Kilimanjaro. Classrooms from all over the world participated in the expedition virtually. They followed the trek through the expedition website (http://www.xpeditiononline.com/) where pictures and journals were posted, and posed their own questions which were answered by the expedition and base camp team members

New geophysical views of Mt.Melbourne Volcano (East Antarctica)

NASA Astrophysics Data System (ADS)

Armadillo, E.; Gambetta, M.; Ferraccioli, F.; Corr, H.; Bozzo, E.

2009-05-01

Mt. Melbourne volcano is located along the transition between the Transantarctic Mountains and the West Antarctic Rift System. Recent volcanic activity is suggested by the occurrence of blankets of pyroclastic pumice and scoria fall around the eastern and southern flanks of Mt Melbourne and by pyroclastic layers interbedded with the summit snows. Geothermal activity in the crater area of Mount Melbourne may be linked to the intrusion of dykes within the last 200 years. Geophysical networks suggest that Mount Melbourne is a quiescent volcano, possibly characterised by slow internal dynamics. During the 2002-2003 Italian Antarctic campaign a high-resolution aeromagnetic survey was performed within the TIMM (Tectonics and Interior of Mt. Melbourne area) project. This helicopter-borne survey was flown at low-altitude and in drape-mode configuration (305 m above terrain) with a line separation less than 500 m. Our new high-resolution magnetic maps reveal the largely ice-covered magmatic and tectonic patters in the Mt. Melbourne volcano area. Additionally, in the frame of the UK-Italian ISODYN-WISE project (2005-06), an airborne ice-sounding radar survey was flown. We combine the sub-ice topography with images and models of the interior of Mt. Melbourne volcano, as derived from the high resolution aeromagnetic data and land gravity data. Our new geophysical maps and models also provide a new tool to study the regional setting of the volcano. In particular we re-assess whether there is geophysical evidence for coupling between strike-slip faulting, the Terror Rift, and Mount Melbourne volcano.

MtMAPKK4 is an essential gene for growth and reproduction of Medicago truncatula.

PubMed

Chen, Tao; Zhou, Bo; Duan, Liujian; Zhu, Hui; Zhang, Zhongming

2017-04-01

Mitogen-activated protein kinase (MAPK) cascades are universal signaling modules in eukaryotes, including yeasts, animals and plants. They are involved in responses to various biotic and abiotic stresses, hormones, cell division and developmental processes. A MAPK cascade is composed of three functionally tiered protein kinases, namely MAPK, MAPK kinases (MAPKKs) and MAPK kinase kinases (MAPKKKs). These kinases have been intensively studied for their roles in developmental and physiological processes in various organisms. In this study, a Medicago truncatula MtMAPKK4 mutant with the tobacco retrotransposon Tnt1 insertion was identified using reverse genetics methods. No homozygous progeny could be produced by self-pollination of mapkk4/+ heterozygotes for 5 generations. Heterozygous mapkk4/+ mutant plants exhibited growth retardation, chlorosis symptoms and significantly reduced numbers of infection threads and nodules. The interaction between MtMAPKK4 and MtMAPK3/6 occurred both in yeast and in planta. Green fluorescent protein-tagged MtMAPKK4, MtMAPK3 and MtMAPK6 were all localized to membranes, cytoplasm and nuclei. Expression of MtMAPKK4, MtMAPK3 and MtMAPK6 was detected in various tissues of M. truncatula plants at the nodule maturation stage. Transcript levels of these genes were decreased in roots at the early symbiotic stage. © 2016 Scandinavian Plant Physiology Society.

MT1-MMP is a crucial promotor of synovial invasion in human rheumatoid arthritis

PubMed Central

Miller, Mary-Clare; Manning, Hugh B.; Jain, Abhilash; Troeberg, Linda; Dudhia, Jayesh; Essex, David; Sandison, Ann; Seiki, Motoharu; Nanchahal, Jagdeep; Nagase, Hideaki; Itoh, Yoshifumi

2010-01-01

Objective A hallmark of rheumatoid arthritis (RA) is invasion of the synovial pannus into cartilage and this step requires degradation of the collagen matrix. The aim of this study was to explore the role of one of the collagen-degrading matrix metalloproteinases (MMPs), membrane-type 1 MMP (MT1-MMP), in synovial pannus invasiveness. Methods Expression and localization of MT1-MMP in human RA pannus were investigated by Western blot analysis of primary synovial cells and immunohistochemistry of RA joints specimens. The functional role of MT1-MMP was analyzed by 3D collagen invasion assays and a cartilage invasion assay in the presence or absence of tissue inhibitor of metalloproteinase (TIMP)-1, TIMP-2, or GM6001. The effect of adenoviral expression of a dominant negative MT1-MMP construct lacking a catalytic domain was also examined. Results MT1-MMP was highly expressed at the pannus-cartilage junction of RA joints. Freshly isolated rheumatoid synovial tissues and isolated RA synovial fibroblasts invaded into a 3D collagen matrix in an MT1-MMP-dependent manner. Invasion was blocked by TIMP-2 and GM6001, but not by TIMP-1. It was also inhibited by the over-expression of a dominant negative MT1-MMP which inhibits collagenolytic activity and proMMP-2 activation by MT1-MMP on the cell surface. Synovial fibroblasts also invaded into cartilage in an MT1-MMP-dependent manner. This process was further enhanced by removing aggrecan from the cartilage matrix. Conclusion MT1-MMP is an essential collagen-degrading proteinase during pannus invasion in human RA. Specific inhibition of MT1-MMP-dependent invasion may form a novel therapeutic strategy for RA. PMID:19248098

Construct Validity of the MMPI-2 College Maladjustment (Mt) Scale

ERIC Educational Resources Information Center

Barthlow, Deanna L.; Graham, John R.; Ben-Porath, Yossef S.; McNulty, John L

2004-01-01

The construct validity of the MMPI-2 (Minnesota Multiphasic Personality Inventory-2) College Maladjustment (Mt) Scale was examined using 376 student clients at a university psychological clinic. A principal components analysis and correlations of Mt scale scores with clients' and therapists' ratings of symptoms and functioning showed that the Mt…

Critical Role of Transient Activity of MT1-MMP for ECM Degradation in Invadopodia

PubMed Central

Watanabe, Ayako; Hosino, Daisuke; Koshikawa, Naohiko; Seiki, Motoharu; Suzuki, Takashi; Ichikawa, Kazuhisa

2013-01-01

Focal degradation of extracellular matrix (ECM) is the first step in the invasion of cancer cells. MT1-MMP is a potent membrane proteinase employed by aggressive cancer cells. In our previous study, we reported that MT1-MMP was preferentially located at membrane protrusions called invadopodia, where MT1-MMP underwent quick turnover. Our computer simulation and experiments showed that this quick turnover was essential for the degradation of ECM at invadopodia (Hoshino, D., et al., (2012) PLoS Comp. Biol., 8: e1002479). Here we report on characterization and analysis of the ECM-degrading activity of MT1-MMP, aiming at elucidating a possible reason for its repetitive insertion in the ECM degradation. First, in our computational model, we found a very narrow transient peak in the activity of MT1-MMP followed by steady state activity. This transient activity was due to the inhibition by TIMP-2, and the steady state activity of MT1-MMP decreased dramatically at higher TIMP-2 concentrations. Second, we evaluated the role of the narrow transient activity in the ECM degradation. When the transient activity was forcibly suppressed in computer simulations, the ECM degradation was heavily suppressed, indicating the essential role of this transient peak in the ECM degradation. Third, we compared continuous and pulsatile turnover of MT1-MMP in the ECM degradation at invadopodia. The pulsatile insertion showed basically consistent results with the continuous insertion in the ECM degradation, and the ECM degrading efficacy depended heavily on the transient activity of MT1-MMP in both models. Unexpectedly, however, low-frequency/high-concentration insertion of MT1-MMP was more effective in ECM degradation than high-frequency/low-concentration pulsatile insertion even if the time-averaged amount of inserted MT1-MMP was the same. The present analysis and characterization of ECM degradation by MT1-MMP together with our previous report indicate a dynamic nature of MT1-MMP at

Multiple essential MT1-MMP functions in tooth root formation, dentinogenesis, and tooth eruption

PubMed Central

Wimer, H.F.; Yamada, S.S.; Yang, T.; Holmbeck, K.; Foster, B.L.

2016-01-01

Membrane-type matrix metalloproteinase 1 (MT1-MMP) is a transmembrane zinc-endopeptidase that breaks down extracellular matrix components, including several collagens, during tissue development and physiological remodeling. MT1-MMP-deficient mice (MT1-MMP−/−) feature severe defects in connective tissues, such as impaired growth, osteopenia, fibrosis, and conspicuous loss of molar tooth eruption and root formation. In order to define the functions of MT1-MMP during root formation and tooth eruption, we analyzed the development of teeth and surrounding tissues in the absence of MT1-MMP. In situ hybridization showed that MT1-MMP was widely expressed in cells associated with teeth and surrounding connective tissues during development. Multiple defects in dentoalveolar tissues were associated with loss of MT1-MMP. Root formation was inhibited by defective structure and function of Hertwig's epithelial root sheath (HERS). However, no defect was found in creation of the eruption pathway, suggesting that tooth eruption was hampered by lack of alveolar bone modeling/remodeling coincident with reduced periodontal ligament (PDL) formation and integration with the alveolar bone. Additionally, we identified a significant defect in dentin formation and mineralization associated with the loss of MT1-MMP. To segregate these multiple defects and trace their cellular origin, conditional ablation of MT1-MMP was performed in epithelia and mesenchyme. Mice featuring selective loss of MT1-MMP activity in the epithelium were indistinguishable from wild type mice, and importantly, featured a normal HERS structure and molar eruption. In contrast, selective knock-out of MT1-MMP in Osterix-expressing mesenchymal cells, including osteoblasts and odontoblasts, recapitulated major defects from the global knock-out including altered HERS structure, short roots, defective dentin formation and mineralization, and reduced alveolar bone formation, although molars were able to erupt. These data

[Whole Genome Sequencing of Human mtDNA Based on Ion Torrent PGM™ Platform].

PubMed

Cao, Y; Zou, K N; Huang, J P; Ma, K; Ping, Y

2017-08-01

To analyze and detect the whole genome sequence of human mitochondrial DNA （mtDNA） by Ion Torrent PGM™ platform and to study the differences of mtDNA sequence in different tissues. Samples were collected from 6 unrelated individuals by forensic postmortem examination, including chest blood, hair, costicartilage, nail, skeletal muscle and oral epithelium. Amplification of whole genome sequence of mtDNA was performed by 4 pairs of primer. Libraries were constructed with Ion Shear™ Plus Reagents kit and Ion Plus Fragment Library kit. Whole genome sequencing of mtDNA was performed using Ion Torrent PGM™ platform. Sanger sequencing was used to determine the heteroplasmy positions and the mutation positions on HVⅠ region. The whole genome sequence of mtDNA from all samples were amplified successfully. Six unrelated individuals belonged to 6 different haplotypes. Different tissues in one individual had heteroplasmy difference. The heteroplasmy positions and the mutation positions on HVⅠ region were verified by Sanger sequencing. After a consistency check by the Kappa method, it was found that the results of mtDNA sequence had a high consistency in different tissues. The testing method used in present study for sequencing the whole genome sequence of human mtDNA can detect the heteroplasmy difference in different tissues, which have good consistency. The results provide guidance for the further applications of mtDNA in forensic science. Copyright© by the Editorial Department of Journal of Forensic Medicine

76 FR 53049 - Amendment of Class E Airspace; Shelby, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-25

...-0536; Airspace Docket No. 11-ANM-13] Amendment of Class E Airspace; Shelby, MT AGENCY: Federal Aviation Administration (FAA), DOT. ACTION: Final rule. SUMMARY: This action modifies Class E airspace at Shelby, MT, to... E airspace designations are published in paragraph 6005 of FAA Order 7400.9U dated August 18, 2010...

How good are indirect tests at detecting recombination in human mtDNA?

PubMed

White, Daniel James; Bryant, David; Gemmell, Neil John

2013-07-08

Empirical proof of human mitochondrial DNA (mtDNA) recombination in somatic tissues was obtained in 2004; however, a lack of irrefutable evidence exists for recombination in human mtDNA at the population level. Our inability to demonstrate convincingly a signal of recombination in population data sets of human mtDNA sequence may be due, in part, to the ineffectiveness of current indirect tests. Previously, we tested some well-established indirect tests of recombination (linkage disequilibrium vs. distance using D' and r(2), Homoplasy Test, Pairwise Homoplasy Index, Neighborhood Similarity Score, and Max χ(2)) on sequence data derived from the only empirically confirmed case of human mtDNA recombination thus far and demonstrated that some methods were unable to detect recombination. Here, we assess the performance of these six well-established tests and explore what characteristics specific to human mtDNA sequence may affect their efficacy by simulating sequence under various parameters with levels of recombination (ρ) that vary around an empirically derived estimate for human mtDNA (population parameter ρ = 5.492). No test performed infallibly under any of our scenarios, and error rates varied across tests, whereas detection rates increased substantially with ρ values > 5.492. Under a model of evolution that incorporates parameters specific to human mtDNA, including rate heterogeneity, population expansion, and ρ = 5.492, successful detection rates are limited to a range of 7-70% across tests with an acceptable level of false-positive results: the neighborhood similarity score incompatibility test performed best overall under these parameters. Population growth seems to have the greatest impact on recombination detection probabilities across all models tested, likely due to its impact on sequence diversity. The implications of our findings on our current understanding of mtDNA recombination in humans are discussed.

How Good Are Indirect Tests at Detecting Recombination in Human mtDNA?

PubMed Central

White, Daniel James; Bryant, David; Gemmell, Neil John

2013-01-01

Empirical proof of human mitochondrial DNA (mtDNA) recombination in somatic tissues was obtained in 2004; however, a lack of irrefutable evidence exists for recombination in human mtDNA at the population level. Our inability to demonstrate convincingly a signal of recombination in population data sets of human mtDNA sequence may be due, in part, to the ineffectiveness of current indirect tests. Previously, we tested some well-established indirect tests of recombination (linkage disequilibrium vs. distance using D′ and r2, Homoplasy Test, Pairwise Homoplasy Index, Neighborhood Similarity Score, and Max χ2) on sequence data derived from the only empirically confirmed case of human mtDNA recombination thus far and demonstrated that some methods were unable to detect recombination. Here, we assess the performance of these six well-established tests and explore what characteristics specific to human mtDNA sequence may affect their efficacy by simulating sequence under various parameters with levels of recombination (ρ) that vary around an empirically derived estimate for human mtDNA (population parameter ρ = 5.492). No test performed infallibly under any of our scenarios, and error rates varied across tests, whereas detection rates increased substantially with ρ values > 5.492. Under a model of evolution that incorporates parameters specific to human mtDNA, including rate heterogeneity, population expansion, and ρ = 5.492, successful detection rates are limited to a range of 7−70% across tests with an acceptable level of false-positive results: the neighborhood similarity score incompatibility test performed best overall under these parameters. Population growth seems to have the greatest impact on recombination detection probabilities across all models tested, likely due to its impact on sequence diversity. The implications of our findings on our current understanding of mtDNA recombination in humans are discussed. PMID:23665874

Snow Depth Depicted on Mt. Lyell by NASA Airborne Snow Observatory

NASA Image and Video Library

2013-05-02

A natural color image of Mt. Lyell, the highest point in the Tuolumne River Basin top image is compared with a three-dimensional color composite image of Mt. Lyell from NASA Airborne Snow Observatory depicting snow depth bottom image.

MT3D-USGS version 1: A U.S. Geological Survey release of MT3DMS updated with new and expanded transport capabilities for use with MODFLOW

USGS Publications Warehouse

Bedekar, Vivek; Morway, Eric D.; Langevin, Christian D.; Tonkin, Matthew J.

2016-09-30

MT3D-USGS, a U.S. Geological Survey updated release of the groundwater solute transport code MT3DMS, includes new transport modeling capabilities to accommodate flow terms calculated by MODFLOW packages that were previously unsupported by MT3DMS and to provide greater flexibility in the simulation of solute transport and reactive solute transport. Unsaturated-zone transport and transport within streams and lakes, including solute exchange with connected groundwater, are among the new capabilities included in the MT3D-USGS code. MT3D-USGS also includes the capability to route a solute through dry cells that may occur in the Newton-Raphson formulation of MODFLOW (that is, MODFLOW-NWT). New chemical reaction Package options include the ability to simulate inter-species reactions and parent-daughter chain reactions. A new pump-and-treat recirculation package enables the simulation of dynamic recirculation with or without treatment for combinations of wells that are represented in the flow model, mimicking the above-ground treatment of extracted water. A reformulation of the treatment of transient mass storage improves conservation of mass and yields solutions for better agreement with analytical benchmarks. Several additional features of MT3D-USGS are (1) the separate specification of the partitioning coefficient (Kd) within mobile and immobile domains; (2) the capability to assign prescribed concentrations to the top-most active layer; (3) the change in mass storage owing to the change in water volume now appears as its own budget item in the global mass balance summary; (4) the ability to ignore cross-dispersion terms; (5) the definition of Hydrocarbon Spill-Source Package (HSS) mass loading zones using regular and irregular polygons, in addition to the currently supported circular zones; and (6) the ability to specify an absolute minimum thickness rather than the default percent minimum thickness in dry-cell circumstances.Benchmark problems that implement the new

Viscosity controlled magma-carbonate interaction: a comparison of Mt. Vesuvius (Italy) and Mt. Merapi (Indonesia).

NASA Astrophysics Data System (ADS)

Blythe, L. S.; Misiti, V.; Masotta, M.; Taddeucci, J.; Freda, C.; Troll, V. R.; Deegan, F. M.; Jolis, E. M.

2012-04-01

Magma-carbonate interaction is increasingly seen as a viable and extremely important cause of magma contamination, and the generation of a crustally sourced CO2 phase (Goff et al., 2001; Freda et al., 2010). Even though the process is well recognized at certain volcanoes e.g. Popocatépetl, (Mexico); Merapi, (Indonesia); and Colli Albani, (Italy) (Goff et al., 2001; Deegan et al., 2010; Freda et al., 2010), neither the kinetics of carbonate assimilation nor its consequences for controlling the explosivity of eruptions have been constrained. Here we show the results of magma-carbonate interaction experiments conducted at 1200 °C and 0.5 GPa for varying durations (0 s, 60 s, 90 s and 300 s) for the Mt. Merapi (Indonesia) and Mt. Vesuvius (Italy) volcanic systems. We performed experiments using glassy starting materials specific to each volcano (shoshonite for Mt. Vesuvius, basaltic-andesite for Mt. Merapi) with different degrees of hydration (anhydrous vs hydration with ~ 2 wt % water) and using carbonate fragments of local origin; see Deegan et al., (2010) and Jolis et al., (2011). Experimental products include a gas phase (CO2-rich) and two melt phases, one pristine (Ca-normal) and one contaminated (Ca-rich) separated by a 'contamination front' which propagates outwards from the carbonate clast. Vesicles appear to nucleate in the contaminated glass and then migrate into the pristine one. Both contamination front propagation and bubble migration away from the carbonate are slower in anhydrous basaltic-andesite (Merapi anhydrous series) than in hydrated basaltic-andesite and shoshonite (Merapi and Vesuvius hydrated series), suggesting that assimilation speed is strongly controlled by the degree of hydration and the SiO2 content, both of which influence melt viscosity and hence diffusivity. As the carbonate dissolution proceeds in our experiments, initially dissolved and eventually exsolved CO2 builds up in the contaminated Ca-rich melt phase. Once melt volatile

Thermodynamics of Pb(ii) and Zn(ii) binding to MT-3, a neurologically important metallothionein.

PubMed

Carpenter, M C; Shami Shah, A; DeSilva, S; Gleaton, A; Su, A; Goundie, B; Croteau, M L; Stevenson, M J; Wilcox, D E; Austin, R N

2016-06-01

Isothermal titration calorimetry (ITC) was used to quantify the thermodynamics of Pb(2+) and Zn(2+) binding to metallothionein-3 (MT-3). Pb(2+) binds to zinc-replete Zn7MT-3 displacing each zinc ion with a similar change in free energy (ΔG) and enthalpy (ΔH). EDTA chelation measurements of Zn7MT-3 and Pb7MT-3 reveal that both metal ions are extracted in a tri-phasic process, indicating that they bind to the protein in three populations with different binding thermodynamics. Metal binding is entropically favoured, with an enthalpic penalty that reflects the enthalpic cost of cysteine deprotonation accompanying thiolate ligation of the metal ions. These data indicate that Pb(2+) binding to both apo MT-3 and Zn7MT-3 is thermodynamically favourable, and implicate MT-3 in neuronal lead biochemistry.

Mitochondrial depolarization in yeast zygotes inhibits clonal expansion of selfish mtDNA.

PubMed

Karavaeva, Iuliia E; Golyshev, Sergey A; Smirnova, Ekaterina A; Sokolov, Svyatoslav S; Severin, Fedor F; Knorre, Dmitry A

2017-04-01

Non-identical copies of mitochondrial DNA (mtDNA) compete with each other within a cell and the ultimate variant of mtDNA present depends on their relative replication rates. Using yeast Saccharomyces cerevisiae cells as a model, we studied the effects of mitochondrial inhibitors on the competition between wild-type mtDNA and mutant selfish mtDNA in heteroplasmic zygotes. We found that decreasing mitochondrial transmembrane potential by adding uncouplers or valinomycin changes the competition outcomes in favor of the wild-type mtDNA. This effect was significantly lower in cells with disrupted mitochondria fission or repression of the autophagy-related genes ATG8 , ATG32 or ATG33 , implying that heteroplasmic zygotes activate mitochondrial degradation in response to the depolarization. Moreover, the rate of mitochondrially targeted GFP turnover was higher in zygotes treated with uncoupler than in haploid cells or untreated zygotes. Finally, we showed that vacuoles of zygotes with uncoupler-activated autophagy contained DNA. Taken together, our data demonstrate that mitochondrial depolarization inhibits clonal expansion of selfish mtDNA and this effect depends on mitochondrial fission and autophagy. These observations suggest an activation of mitochondria quality control mechanisms in heteroplasmic yeast zygotes. © 2017. Published by The Company of Biologists Ltd.

Transformation of MT Resistivity Sections into Geologically Meaningful Images

NASA Astrophysics Data System (ADS)

Park, S. K.

2004-05-01

Earthscope offers an unprecedented opportunity for interdisciplinary studies of North America. In addition to a continent-wide seismic study, it includes the acquisition of magnetotelluric (MT) data at many of the Bigfoot array sites. Earthscope will thus provide a uniform 3-D MT survey over regional scales when completed. MT interpreters will be able to include 3-D regional effects in their models for the first time whether they are interpreting local studies. However, the full value of the interdisciplinary nature of Earthscope will be realized only if MT sections and maps are useful to other earth scientists. The standard final product from any 2-D or 3-D MT interpretation is a spatial distribution of electrical resistivity. Inference of the physicochemical state from bulk resistivity is complicated because a variety of factors influence the property including temperature, intrinsic conduction of silicates, and small amounts of interconnected conducting materials (e.g., graphite, metallic minerals, partial melt, fluid). Here, I use petrophysical measurements and a petrological model to transform a resistivity section into cross sections of temperature and partial melt fraction in the mantle beneath the Sierra Nevada. In this manner, I am able to separate the contributions of increasing temperature and melt fraction to the bulk resistivity. Predicted melt fractions match observations from xenoliths relatively well but temperatures are systematically 200C higher than those observed. A small amount of dissolved hydrogen (~70 ppm H/Si) lowers the predicted temperatures to match those from the xenoliths, however. I conclude that while this transformation is a simple first step based on many assumptions, initial results are promising.

TipMT: Identification of PCR-based taxon-specific markers.

PubMed

Rodrigues-Luiz, Gabriela F; Cardoso, Mariana S; Valdivia, Hugo O; Ayala, Edward V; Gontijo, Célia M F; Rodrigues, Thiago de S; Fujiwara, Ricardo T; Lopes, Robson S; Bartholomeu, Daniella C

2017-02-11

Molecular genetic markers are one of the most informative and widely used genome features in clinical and environmental diagnostic studies. A polymerase chain reaction (PCR)-based molecular marker is very attractive because it is suitable to high throughput automation and confers high specificity. However, the design of taxon-specific primers may be difficult and time consuming due to the need to identify appropriate genomic regions for annealing primers and to evaluate primer specificity. Here, we report the development of a Tool for Identification of Primers for Multiple Taxa (TipMT), which is a web application to search and design primers for genotyping based on genomic data. The tool identifies and targets single sequence repeats (SSR) or orthologous/taxa-specific genes for genotyping using Multiplex PCR. This pipeline was applied to the genomes of four species of Leishmania (L. amazonensis, L. braziliensis, L. infantum and L. major) and validated by PCR using artificial genomic DNA mixtures of the Leishmania species as templates. This experimental validation demonstrates the reliability of TipMT because amplification profiles showed discrimination of genomic DNA samples from Leishmania species. The TipMT web tool allows for large-scale identification and design of taxon-specific primers and is freely available to the scientific community at http://200.131.37.155/tipMT/ .

Mitochondrial comparative genomics and phylogenetic signal assessment of mtDNA among arbuscular mycorrhizal fungi.

PubMed

Nadimi, Maryam; Daubois, Laurence; Hijri, Mohamed

2016-05-01

Mitochondrial (mt) genes, such as cytochrome C oxidase genes (cox), have been widely used for barcoding in many groups of organisms, although this approach has been less powerful in the fungal kingdom due to the rapid evolution of their mt genomes. The use of mt genes in phylogenetic studies of Dikarya has been met with success, while early diverging fungal lineages remain less studied, particularly the arbuscular mycorrhizal fungi (AMF). Advances in next-generation sequencing have substantially increased the number of publically available mtDNA sequences for the Glomeromycota. As a result, comparison of mtDNA across key AMF taxa can now be applied to assess the phylogenetic signal of individual mt coding genes, as well as concatenated subsets of coding genes. Here we show comparative analyses of publically available mt genomes of Glomeromycota, augmented with two mtDNA genomes that were newly sequenced for this study (Rhizophagus irregularis DAOM240159 and Glomus aggregatum DAOM240163), resulting in 16 complete mtDNA datasets. R. irregularis isolate DAOM240159 and G. aggregatum isolate DAOM240163 showed mt genomes measuring 72,293bp and 69,505bp with G+C contents of 37.1% and 37.3%, respectively. We assessed the phylogenies inferred from single mt genes and complete sets of coding genes, which are referred to as "supergenes" (16 concatenated coding genes), using Shimodaira-Hasegawa tests, in order to identify genes that best described AMF phylogeny. We found that rnl, nad5, cox1, and nad2 genes, as well as concatenated subset of these genes, provided phylogenies that were similar to the supergene set. This mitochondrial genomic analysis was also combined with principal coordinate and partitioning analyses, which helped to unravel certain evolutionary relationships in the Rhizophagus genus and for G. aggregatum within the Glomeromycota. We showed evidence to support the position of G. aggregatum within the R. irregularis 'species complex'. Copyright © 2016

Single-cell analysis of intercellular heteroplasmy of mtDNA in Leber hereditary optic neuropathy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kobayashi, Y.; Sharpe, H.; Brown, N.

1994-07-01

The authors have investigated the distribution of mutant mtDNA molecules in single cells from a patient with Leber hereditary optic neuropathy (LHON). LHON is a maternally inherited disease that is characterized by a sudden-onset bilateral loss of central vision, which typically occurs in early adulthood. More than 50% of all LHON patients carry an mtDNA mutation at nucleotide position 11778. This nucleotide change converts a highly conserved arginine residue to histidine at codon 340 in the NADH-ubiquinone oxidoreductase subunit 4 (ND4) gene of mtDNA. In the present study, the authors used PCR amplification of mtDNA from lymphocytes to investigate mtDNAmore » heteroplasmy at the single-cell level in a LHON patient. They found that most cells were either homoplasmic normal or homoplasmic mutant at nucleotide position 11778. Some (16%) cells contained both mutant and normal mtDNA.« less

The M-T Hook Structure Is Critical for Design of HIV-1 Fusion Inhibitors*

PubMed Central

Chong, Huihui; Yao, Xue; Sun, Jianping; Qiu, Zonglin; Zhang, Meng; Waltersperger, Sandro; Wang, Meitian; Cui, Sheng; He, Yuxian

2012-01-01

CP621-652 is a potent HIV-1 fusion inhibitor peptide derived from the C-terminal heptad repeat of gp41. We recently identified that its N-terminal residues Met-626 and Thr-627 adopt a unique hook-like structure (termed M-T hook) thus stabilizing the interaction of the inhibitor with the deep pocket on the N-terminal heptad repeat. In this study, we further demonstrated that the M-T hook structure is a key determinant of CP621-652 in terms of its thermostability and anti-HIV activity. To directly define the structure and function of the M-T hook, we generated the peptide MT-C34 by incorporating Met-626 and Thr-627 into the N terminus of the C-terminal heptad repeat-derived peptide C34. The high resolution crystal structure (1.9 Å) of MT-C34 complexed by an N-terminal heptad repeat-derived peptide reveals that the M-T hook conformation is well preserved at the N-terminal extreme of the inhibitor. Strikingly, addition of two hook residues could dramatically enhance the binding affinity and thermostability of 6-helix bundle core. Compared with C34, MT-C34 exhibited significantly increased activity to inhibit HIV-1 envelope-mediated cell fusion (6.6-fold), virus entry (4.5-fold), and replication (6-fold). Mechanistically, MT-C34 had a 10.5-fold higher increase than C34 in blocking 6-helix bundle formation. We further showed that MT-C34 possessed higher potency against T20 (Enfuvirtide, Fuzeon)-resistant HIV-1 variants. Therefore, this study provides convincing data for our proposed concept that the M-T hook structure is critical for designing HIV-1 fusion inhibitors. PMID:22879603

Random mtDNA mutations modulate proliferation capacity in mouse embryonic fibroblasts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kukat, Alexandra; Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases; Edgar, Daniel

2011-06-10

Highlights: {yields} Increased mtDNA mutations in MEFs lead to high level of spontaneous immortalization. {yields} This process is independent of endogenous ROS production. {yields} Aerobic glycolysis significantly contributes to spontaneous immortalization of MEFs. -- Abstract: An increase in mtDNA mutation load leads to a loss of critical cells in different tissues thereby contributing to the physiological process of organismal ageing. Additionally, the accumulation of senescent cells that display changes in metabolic function might act in an active way to further disrupt the normal tissue function. We believe that this could be the important link missing in our understanding of themore » molecular mechanisms of premature ageing in the mtDNA mutator mice. We tested proliferation capacity of mtDNA mutator cells in vitro. When cultured in physiological levels of oxygen (3%) their proliferation capacity is somewhat lower than wild-type cells. Surprisingly, in conditions of increased oxidative stress (20% O{sub 2}) mtDNA mutator mouse embryonic fibroblasts exhibit continuous proliferation due to spontaneous immortalization, whereas the same conditions promote senescence in wild-type cells. We believe that an increase in aerobic glycolysis observed in mtDNA mutator mice is a major mechanism behind this process. We propose that glycolysis promotes proliferation and allows a fast turnover of metabolites, but also leads to energy crisis due to lower ATP production rate. This could lead to compromised replication and/or repair and therefore, in rare cases, might lead to mutations in tumor suppressor genes and spontaneous immortalization.« less

MT2-MMP-dependent release of collagen IV NC1 domains regulates submandibular gland branching morphogenesis.

PubMed

Rebustini, Ivan T; Myers, Christopher; Lassiter, Keyonica S; Surmak, Andrew; Szabova, Ludmila; Holmbeck, Kenn; Pedchenko, Vadim; Hudson, Billy G; Hoffman, Matthew P

2009-10-01

Proteolysis is essential during branching morphogenesis, but the roles of MT-MMPs and their proteolytic products are not clearly understood. Here, we discover that decreasing MT-MMP activity during submandibular gland branching morphogenesis decreases proliferation and increases collagen IV and MT-MMP expression. Specifically, reducing epithelial MT2-MMP profoundly decreases proliferation and morphogenesis, increases Col4a2 and intracellular accumulation of collagen IV, and decreases the proteolytic release of collagen IV NC1 domains. Importantly, we demonstrate the presence of collagen IV NC1 domains in developing tissue. Furthermore, recombinant collagen IV NC1 domains rescue branching morphogenesis after MT2-siRNA treatment, increasing MT-MMP and proproliferative gene expression via beta1 integrin and PI3K-AKT signaling. Additionally, HBEGF also rescues MT2-siRNA treatment, increasing NC1 domain release, proliferation, and MT2-MMP and Hbegf expression. Our studies provide mechanistic insight into how MT2-MMP-dependent release of bioactive NC1 domains from collagen IV is critical for integrating collagen IV synthesis and proteolysis with epithelial proliferation during branching morphogenesis.

Stochastic modelling, Bayesian inference, and new in vivo measurements elucidate the debated mtDNA bottleneck mechanism

PubMed Central

Johnston, Iain G; Burgstaller, Joerg P; Havlicek, Vitezslav; Kolbe, Thomas; Rülicke, Thomas; Brem, Gottfried; Poulton, Jo; Jones, Nick S

2015-01-01

Dangerous damage to mitochondrial DNA (mtDNA) can be ameliorated during mammalian development through a highly debated mechanism called the mtDNA bottleneck. Uncertainty surrounding this process limits our ability to address inherited mtDNA diseases. We produce a new, physically motivated, generalisable theoretical model for mtDNA populations during development, allowing the first statistical comparison of proposed bottleneck mechanisms. Using approximate Bayesian computation and mouse data, we find most statistical support for a combination of binomial partitioning of mtDNAs at cell divisions and random mtDNA turnover, meaning that the debated exact magnitude of mtDNA copy number depletion is flexible. New experimental measurements from a wild-derived mtDNA pairing in mice confirm the theoretical predictions of this model. We analytically solve a mathematical description of this mechanism, computing probabilities of mtDNA disease onset, efficacy of clinical sampling strategies, and effects of potential dynamic interventions, thus developing a quantitative and experimentally-supported stochastic theory of the bottleneck. DOI: http://dx.doi.org/10.7554/eLife.07464.001 PMID:26035426

Reservoir uncertainty, Precambrian topography, and carbon sequestration in the Mt. Simon Sandstone, Illinois Basin

USGS Publications Warehouse

Leetaru, H.E.; McBride, J.H.

2009-01-01

Sequestration sites are evaluated by studying the local geological structure and confirming the presence of both a reservoir facies and an impermeable seal not breached by significant faulting. The Cambrian Mt. Simon Sandstone is a blanket sandstone that underlies large parts of Midwest United States and is this region's most significant carbon sequestration reservoir. An assessment of the geological structure of any Mt. Simon sequestration site must also include knowledge of the paleotopography prior to deposition. Understanding Precambrian paleotopography is critical in estimating reservoir thickness and quality. Regional outcrop and borehole mapping of the Mt. Simon in conjunction with mapping seismic reflection data can facilitate the prediction of basement highs. Any potential site must, at the minimum, have seismic reflection data, calibrated with drill-hole information, to evaluate the presence of Precambrian topography and alleviate some of the uncertainty surrounding the thickness or possible absence of the Mt. Simon at a particular sequestration site. The Mt. Simon is thought to commonly overlie Precambrian basement granitic or rhyolitic rocks. In places, at least about 549 m (1800 ft) of topographic relief on the top of the basement surface prior to Mt. Simon deposition was observed. The Mt. Simon reservoir sandstone is thin or not present where basement is topographically high, whereas the low areas can have thick Mt. Simon. The paleotopography on the basement and its correlation to Mt. Simon thickness have been observed at both outcrops and in the subsurface from the states of Illinois, Ohio, Wisconsin, and Missouri. ?? 2009. The American Association of Petroleum Geologists/Division of Environmental Geosciences. All rights reserved.

Type of featural attention differentially modulates hMT+ responses to illusory motion aftereffects.

PubMed

Castelo-Branco, Miguel; Kozak, Lajos R; Formisano, Elia; Teixeira, João; Xavier, João; Goebel, Rainer

2009-11-01

Activity in the human motion complex (hMT(+)/V5) is related to the perception of motion, be it either real surface motion or an illusion of motion such as apparent motion (AM) or motion aftereffect (MAE). It is a long-lasting debate whether illusory motion-related activations in hMT(+) represent the motion itself or attention to it. We have asked whether hMT(+) responses to MAEs are present when shifts in arousal are suppressed and attention is focused on concurrent motion versus nonmotion features. Significant enhancement of hMT(+) activity was observed during MAEs when attention was focused either on concurrent spatial angle or color features. This observation was confirmed by direct comparison of adapting (MAE inducing) versus nonadapting conditions. In contrast, this effect was diminished when subjects had to report on concomitant speed changes of superimposed AM. The same finding was observed for concomitant orthogonal real motion (RM), suggesting that selective attention to concurrent illusory or real motion was interfering with the saliency of MAE signals in hMT(+). We conclude that MAE-related changes in the global activity of hMT(+) are present provided selective attention is not focused on an interfering feature such as concurrent motion. Accordingly, there is a genuine MAE-related motion signal in hMT(+) that is neither explained by shifts in arousal nor by selective attention.

77 FR 24159 - Proposed Modification of Class E Airspace; Plentywood, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-23

... action proposes to modify Class E airspace at Plentywood Sher-Wood Airport, Plentywood, MT. Controlled...) standard instrument approach procedures at Plentywood Sher-Wood Airport. The FAA is proposing this action... Sher-Wood Airport, Plentywood, MT. Controlled airspace is necessary to accommodate aircraft using RNAV...

Insertion of a self-splicing intron into the mtDNA of atriploblastic animal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valles, Y.; Halanych, K.; Boore, J.L.

2006-04-14

Nephtys longosetosa is a carnivorous polychaete worm that lives in the intertidal and subtidal zones with worldwide distribution (pleijel&rouse2001). Its mitochondrial genome has the characteristics typical of most metazoans: 37 genes; circular molecule; almost no intergenic sequence; and no significant gene rearrangements when compared to other annelid mtDNAs (booremoritz19981995). Ubiquitous features as small intergenic regions and lack of introns suggested that metazoan mtDNAs are under strong selective pressures to reduce their genome size allowing for faster replication requirements (booremoritz19981995Lynch2005). Yet, in 1996 two type I introns were found in the mtDNA of the basal metazoan Metridium senile (FigureX). Breaking amore » long-standing rule (absence of introns in metazoan mtDNA), this finding was later supported by the further presence of group I introns in other cnidarians. Interestingly, only the class Anthozoa within cnidarians seems to harbor such introns. Although several hundreds of triploblastic metazoan mtDNAs have been sequenced, this study is the first evidence of mitochondrial introns in triploblastic metazoans. The cox1 gene of N. longosetosa has an intron of almost 2 kbs in length. This finding represents as well the first instance of a group II intron (anthozoans harbor group I introns) in all metazoan lineages. Opposite trends are observed within plants, fungi and protist mtDNAs, where introns (both group I and II) and other non-coding sequences are widespread. Plant, fungal and protist mtDNA structure and organization differ enormously from that of metazoan mtDNA. Both, plant and fungal mtDNA are dynamic molecules that undergo high rates of recombination, contain long intergenic spacer regions and harbor both group I and group II introns. However, as metazoans they have a conserved gene content. Protists, on the other hand have a striking variation of gene content and introns that account for the genome size variation. In

Evidence of animal mtDNA recombination between divergent populations of the potato cyst nematode Globodera pallida.

PubMed

Hoolahan, Angelique H; Blok, Vivian C; Gibson, Tracey; Dowton, Mark

2012-03-01

Recombination is typically assumed to be absent in animal mitochondrial genomes (mtDNA). However, the maternal mode of inheritance means that recombinant products are indistinguishable from their progenitor molecules. The majority of studies of mtDNA recombination assess past recombination events, where patterns of recombination are inferred by comparing the mtDNA of different individuals. Few studies assess contemporary mtDNA recombination, where recombinant molecules are observed as direct mosaics of known progenitor molecules. Here we use the potato cyst nematode, Globodera pallida, to investigate past and contemporary recombination. Past recombination was assessed within and between populations of G. pallida, and contemporary recombination was assessed in the progeny of experimental crosses of these populations. Breeding of genetically divergent organisms may cause paternal mtDNA leakage, resulting in heteroplasmy and facilitating the detection of recombination. To assess contemporary recombination we looked for evidence of recombination between the mtDNA of the parental populations within the mtDNA of progeny. Past recombination was detected between a South American population and several UK populations of G. pallida, as well as between two South American populations. This suggests that these populations may have interbred, paternal mtDNA leakage occurred, and the mtDNA of these populations subsequently recombined. This evidence challenges two dogmas of animal mtDNA evolution; no recombination and maternal inheritance. No contemporary recombination between the parental populations was detected in the progeny of the experimental crosses. This supports current arguments that mtDNA recombination events are rare. More sensitive detection methods may be required to adequately assess contemporary mtDNA recombination in animals.

mtDNA Mutagenesis Disrupts Pluripotent Stem Cell Function by Altering Redox Signaling

PubMed Central

Hämäläinen, Riikka H.; Ahlqvist, Kati J.; Ellonen, Pekka; Lepistö, Maija; Logan, Angela; Otonkoski, Timo; Murphy, Michael P.; Suomalainen, Anu

2015-01-01

Summary mtDNA mutagenesis in somatic stem cells leads to their dysfunction and to progeria in mouse. The mechanism was proposed to involve modification of reactive oxygen species (ROS)/redox signaling. We studied the effect of mtDNA mutagenesis on reprogramming and stemness of pluripotent stem cells (PSCs) and show that PSCs select against specific mtDNA mutations, mimicking germline and promoting mtDNA integrity despite their glycolytic metabolism. Furthermore, mtDNA mutagenesis is associated with an increase in mitochondrial H2O2, reduced PSC reprogramming efficiency, and self-renewal. Mitochondria-targeted ubiquinone, MitoQ, and N-acetyl-L-cysteine efficiently rescued these defects, indicating that both reprogramming efficiency and stemness are modified by mitochondrial ROS. The redox sensitivity, however, rendered PSCs and especially neural stem cells sensitive to MitoQ toxicity. Our results imply that stem cell compartment warrants special attention when the safety of new antioxidants is assessed and point to an essential role for mitochondrial redox signaling in maintaining normal stem cell function. PMID:26027936

mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences

PubMed Central

Lee, Hwan Young; Song, Injee; Ha, Eunho; Cho, Sung-Bae; Yang, Woo Ick; Shin, Kyoung-Jin

2008-01-01

Background For the past few years, scientific controversy has surrounded the large number of errors in forensic and literature mitochondrial DNA (mtDNA) data. However, recent research has shown that using mtDNA phylogeny and referring to known mtDNA haplotypes can be useful for checking the quality of sequence data. Results We developed a Web-based bioinformatics resource "mtDNAmanager" that offers a convenient interface supporting the management and quality analysis of mtDNA sequence data. The mtDNAmanager performs computations on mtDNA control-region sequences to estimate the most-probable mtDNA haplogroups and retrieves similar sequences from a selected database. By the phased designation of the most-probable haplogroups (both expected and estimated haplogroups), mtDNAmanager enables users to systematically detect errors whilst allowing for confirmation of the presence of clear key diagnostic mutations and accompanying mutations. The query tools of mtDNAmanager also facilitate database screening with two options of "match" and "include the queried nucleotide polymorphism". In addition, mtDNAmanager provides Web interfaces for users to manage and analyse their own data in batch mode. Conclusion The mtDNAmanager will provide systematic routines for mtDNA sequence data management and analysis via easily accessible Web interfaces, and thus should be very useful for population, medical and forensic studies that employ mtDNA analysis. mtDNAmanager can be accessed at . PMID:19014619

The fate of MtBE during Fenton-like treatments through laboratory scale column tests.

PubMed

Piscitelli, Daniela; Zingaretti, Daniela; Verginelli, Iason; Gavasci, Renato; Baciocchi, Renato

2015-12-01

In Situ Chemical Oxidation (ISCO) based on the Fenton's process is a proven technology for the treatment of groundwater contaminated by organic compounds. Nevertheless, the application of this treatment process to methyl tert-butyl ether (MtBE) is questioned, as there are concerns about its capacity to achieve complete mineralization. Many existing studies have focused on water contaminated by MtBE and are thus not representative of in situ treatments since they do not consider the presence of soil. In this work, the effectiveness of a Fenton-like process for MtBE treatment was proven in soil column tests performed at operating conditions (i.e., oxidant and contaminant concentration and flow rates) resembling those typically used for in situ applications. No MtBE by-products were detected in any of the tested conditions, thus suggesting that the tert-butyl group of MtBE was completely degraded. A mass balance based on the CO2 produced was used as evidence that most of the MtBE removed was actually mineralized. Finally, the obtained results show that preconditioning of soil with a chelating agent (EDTA) significantly enhanced MtBE oxidation. Copyright © 2015 Elsevier B.V. All rights reserved.

The mitochondrial outer membrane protein MDI promotes local protein synthesis and mtDNA replication.

PubMed

Zhang, Yi; Chen, Yong; Gucek, Marjan; Xu, Hong

2016-05-17

Early embryonic development features rapid nuclear DNA replication cycles, but lacks mtDNA replication. To meet the high-energy demands of embryogenesis, mature oocytes are furnished with vast amounts of mitochondria and mtDNA However, the cellular machinery driving massive mtDNA replication in ovaries remains unknown. Here, we describe a Drosophila AKAP protein, MDI that recruits a translation stimulator, La-related protein (Larp), to the mitochondrial outer membrane in ovaries. The MDI-Larp complex promotes the synthesis of a subset of nuclear-encoded mitochondrial proteins by cytosolic ribosomes on the mitochondrial surface. MDI-Larp's targets include mtDNA replication factors, mitochondrial ribosomal proteins, and electron-transport chain subunits. Lack of MDI abolishes mtDNA replication in ovaries, which leads to mtDNA deficiency in mature eggs. Targeting Larp to the mitochondrial outer membrane independently of MDI restores local protein synthesis and rescues the phenotypes of mdi mutant flies. Our work suggests that a selective translational boost by the MDI-Larp complex on the outer mitochondrial membrane might be essential for mtDNA replication and mitochondrial biogenesis during oogenesis. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

The Mt. Mitchell scenery assessment

Treesearch

Robert F. Scheele; Gary W. Johnson

1979-01-01

The scenery assessment process for the Mt. Mitchell Suitability/Feasibility Study was conducted by National Park Service personnel and consultants in 1977-78. It combined approaches designed by Lewis (1962) and Jones (1976) in a comparative evaluation of the scenery of two large landscapes in the Appalachian physiographic province. The purpose of this study was to...

Recreation conflicts on Mt. Evans

Treesearch

Jerry J. Vaske; Karin Wittmann; Susan Laidlaw; Maureen P. Donnelly

1995-01-01

This study examines recreation conflict at Mt. Evans, Colorado; a high visibility area that attracts both hunters and non-hunters. Two types of conflict were distinguished: goal interference and conflict of values. Data were obtained from a series of on-site and mailed surveys. For hunting related events (e.g. seeing an animal being shot, hearing...

The amount and integrity of mtDNA in maize decline with development.

PubMed

Oldenburg, Delene J; Kumar, Rachana A; Bendich, Arnold J

2013-02-01

In maize and other grasses there is a developmental gradient from the meristematic cells at the base of the stalk to the differentiated cells at the leaf tip. This gradient presents an opportunity to investigate changes in mitochondrial DNA (mtDNA) that accompany growth under light and dark conditions, as done previously for plastid DNA. Maize mtDNA was analyzed by DAPI-DNA staining of individual mitochondria, gel electrophoresis/blot hybridization, and real-time qPCR. Both the amount and integrity of the mtDNA were found to decline with development. There was a 20-fold decline in mtDNA copy number per cell from the embryo to the light-grown leaf blade. The amount of DNA per mitochondrial particle was greater in dark-grown leaf blade (24 copies, on average) than in the light (2 copies), with some mitochondria lacking any detectable DNA. Three factors that influence the demise of mtDNA during development are considered: (1) the decision to either repair or degrade mtDNA molecules that are damaged by the reactive oxygen species produced as byproducts of respiration; (2) the generation of ATP by photophosphorylation in chloroplasts, reducing the need for respiratory-competent mitochondria; and (3) the shift in mitochondrial function from energy-generating respiration to photorespiration during the transition from non-green to green tissue.

Parallel loss of nuclear-encoded mitochondrial aminoacyl-tRNA synthetases and mtDNA-encoded tRNAs in Cnidaria.

PubMed

Haen, Karri M; Pett, Walker; Lavrov, Dennis V

2010-10-01

Unlike most animal mitochondrial (mt) genomes, which encode a set of 22 transfer RNAs (tRNAs) sufficient for mt protein synthesis, those of cnidarians have only retained one or two tRNA genes. Whether the missing cnidarian mt-tRNA genes relocated outside the main mt chromosome or were lost remains unclear. It is also unknown what impact the loss of tRNA genes had on other components of the mt translational machinery. Here, we explored the nuclear genome of the cnidarian Nematostella vectensis for the presence of mt-tRNA genes and their corresponding mt aminoacyl-tRNA synthetases (mt-aaRS). We detected no candidates for mt-tRNA genes and only two mt-aaRS orthologs. At the same time, we found that all but one cytosolic aaRS appear to be targeted to mitochondria. These results indicate that the loss of mt-tRNAs in Cnidaria is genuine and occurred in parallel with the loss of nuclear-encoded mt-aaRS. Our phylogenetic analyses of individual aaRS revealed that although the nearly total loss of mt-aaRS is rare, aaRS gene deletion and replacement have occurred throughout the evolution of Metazoa.

78 FR 67299 - Modification of Class E Airspace; Cut Bank, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-12

...-0664; Airspace Docket No. 13-ANM-22] Modification of Class E Airspace; Cut Bank, MT AGENCY: Federal... Cut Bank, MT, to accommodate new Area Navigation (RNAV) Global Positioning System (GPS) standard instrument approach procedures at Cut Bank Municipal Airport. This improves the safety and management of...

No recombination of mtDNA after heteroplasmy for 50 generations in the mouse maternal germline

PubMed Central

Hagström, Erik; Freyer, Christoph; Battersby, Brendan J.; Stewart, James B.; Larsson, Nils-Göran

2014-01-01

Variants of mitochondrial DNA (mtDNA) are commonly used as markers to track human evolution because of the high sequence divergence and exclusive maternal inheritance. It is assumed that the inheritance is clonal, i.e. that mtDNA is transmitted between generations without germline recombination. In contrast to this assumption, a number of studies have reported the presence of recombinant mtDNA molecules in cell lines and animal tissues, including humans. If germline recombination of mtDNA is frequent, it would strongly impact phylogenetic and population studies by altering estimates of coalescent time and branch lengths in phylogenetic trees. Unfortunately, this whole area is controversial and the experimental approaches have been widely criticized as they often depend on polymerase chain reaction (PCR) amplification of mtDNA and/or involve studies of transformed cell lines. In this study, we used an in vivo mouse model that has had germline heteroplasmy for a defined set of mtDNA mutations for more than 50 generations. To assess recombination, we adapted and validated a method based on cloning of single mtDNA molecules in the λ phage, without prior PCR amplification, followed by subsequent mutation analysis. We screened 2922 mtDNA molecules and found no germline recombination after transmission of mtDNA under genetically and evolutionary relevant conditions in mammals. PMID:24163253

Recessive Twinkle mutations in early onset encephalopathy with mtDNA depletion.

PubMed

Hakonen, Anna H; Isohanni, Pirjo; Paetau, Anders; Herva, Riitta; Suomalainen, Anu; Lönnqvist, Tuula

2007-11-01

Twinkle is a mitochondrial replicative helicase, the mutations of which have been associated with autosomal dominant progressive external ophthalmoplegia (adPEO), and recessively inherited infantile onset spinocerebellar ataxia (IOSCA). We report here a new phenotype in two siblings with compound heterozygous Twinkle mutations (A318T and Y508C), characterized by severe early onset encephalopathy and signs of liver involvement. The clinical manifestations included hypotonia, athetosis, sensory neuropathy, ataxia, hearing deficit, ophthalmoplegia, intractable epilepsy and elevation of serum transaminases. The liver showed mtDNA depletion, whereas the muscle mtDNA was only slightly affected. Alpers-Huttenlocher syndrome has previously been associated with mutations of polymerase gamma, a replicative polymerase of mtDNA. We show here that recessive mutations of the close functional partner of the polymerase, the Twinkle helicase, can also manifest as early encephalopathy with liver involvement, a phenotype reminiscent of Alpers syndrome, and are a new genetic cause underlying tissue-specific mtDNA depletion.

Skewed segregation of the mtDNA nt 8993 (T-->G) mutation in human oocytes.

PubMed Central

Blok, R B; Gook, D A; Thorburn, D R; Dahl, H H

1997-01-01

Rapid changes in mtDNA variants between generations have led to the bottleneck theory, which proposes a dramatic reduction in mtDNA numbers during early oogenesis. We studied oocytes from a woman with heteroplasmic expression of the mtDNA nt 8993 (T-->G) mutation. Of seven oocytes analyzed, one showed no evidence of the mutation, and the remaining six had a mutant load > 95%. This skewed expression of the mutation in oocytes is not compatible with the conventional bottleneck theory. A possible explanation is that, during amplification of mtDNA in the developing oocyte, mtDNA from one mitochondrion is preferentially amplified. Thus, subsequent mature oocytes may contain predominantly wild-type or mutant mitochondrial genomes. Images Figure 2 Figure 3 PMID:9199572

Reply to comment by M. Hagerty and S. Sherburn on `External modulation of volcanic activity'

NASA Astrophysics Data System (ADS)

Neuberg, J.

2002-03-01

This reply is based on the re-evaluation of an original data set of spectral seismic amplitudes on short-period seismic stations on Ruapehu, New Zealand, recorded in 1990. While there is agreement that a diurnal peak in the tremor spectrum on Ruapehu is most probably caused by man-made noise, there is disagreement in how to treat time-series adequately in the presence of data gaps. It is demonstrated why Hagerty and Sherburn fail to detect peaks of spectral energy.

MT2-MMP-dependent release of collagen IV NC1 domains regulates submandibular gland branching morphogenesis

PubMed Central

Rebustini, Ivan T.; Myers, Christopher; Lassiter, Keyonica S.; Surmak, Andrew; Szabova, Ludmila; Holmbeck, Kenn; Pedchenko, Vadim; Hudson, Billy G.; Hoffman, Matthew P.

2009-01-01

Summary Proteolysis is essential during branching morphogenesis, but the roles of MT-MMPs and their proteolytic products are not clearly understood. Here we discover that decreasing MT-MMP activity during submandibular gland branching morphogenesis decreases proliferation and increases collagen IV and MT-MMP expression. Importantly, reducing epithelial MT2-MMP profoundly decreases proliferation and morphogenesis, increases Col4a2 and intracellular accumulation of collagen IV, and decreases the proteolytic release of collagen IV NC1 domains. Importantly, we demonstrate the presence of collagen IV NC1 domains in developing tissue. Furthermore, recombinant collagen IV NC1 domains rescue branching morphogenesis after MT2-siRNA-treatment, increasing MT-MMP and pro-proliferative gene expression via β1 integrin and PI3K-AKT signaling. Additionally, HBEGF also rescues MT2-siRNA-treatment, increasing NC1 domain release, proliferation, and MT2-MMP and Hbegf expression. Our studies provide mechanistic insight into how MT2-MMP-dependent release of bioactive NC1 domains from collagen IV is critical for integrating collagen IV synthesis and proteolysis with epithelial proliferation during branching morphogenesis. PMID:19853562

78 FR 54415 - Proposed Establishment of Class E Airspace; Ennis, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-04

... action proposes to establish Class E airspace at Ennis- Big Sky Airport, Ennis, MT. Controlled airspace...) standard instrument approach procedures at Ennis-Big Sky Airport, Ennis, MT. The FAA is proposing this... parties are invited to participate in this proposed rulemaking by submitting such written data, views, or...

77 FR 61248 - Establishment of Class E Airspace; Deer Lodge, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-09

...-0379; Airspace Docket No. 12-ANM-7 Establishment of Class E Airspace; Deer Lodge, MT AGENCY: Federal... at Deer Lodge-City- County Airport, Deer Lodge, MT. Controlled airspace is necessary to accommodate... procedures at Deer Lodge-City-County Airport. This improves the safety and management of Instrument Flight...

78 FR 65556 - Establishment of Class E Airspace; Cut Bank, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-01

...-0532; Airspace Docket No. 13-ANM-21] Establishment of Class E Airspace; Cut Bank, MT AGENCY: Federal... at the Cut Bank VHF Omni-Directional Radio Range Tactical Air Navigational Aid (VORTAC) navigation aid, Cut Bank, MT, to facilitate vectoring of Instrument Flight Rules (IFR) aircraft under control of...

A Signal, from Human mtDNA, of Postglacial Recolonization in Europe

PubMed Central

Torroni, Antonio; Bandelt, Hans-Jürgen; Macaulay, Vincent; Richards, Martin; Cruciani, Fulvio; Rengo, Chiara; Martinez-Cabrera, Vicente; Villems, Richard; Kivisild, Toomas; Metspalu, Ene; Parik, Jüri; Tolk, Helle-Viivi; Tambets, Kristiina; Forster, Peter; Karger, Bernd; Francalacci, Paolo; Rudan, Pavao; Janicijevic, Branka; Rickards, Olga; Savontaus, Marja-Liisa; Huoponen, Kirsi; Laitinen, Virpi; Koivumäki, Satu; Sykes, Bryan; Hickey, Eileen; Novelletto, Andrea; Moral, Pedro; Sellitto, Daniele; Coppa, Alfredo; Al-Zaheri, Nadia; Santachiara-Benerecetti, A. Silvana; Semino, Ornella; Scozzari, Rosaria

2001-01-01

Mitochondrial HVS-I sequences from 10,365 subjects belonging to 56 populations/geographical regions of western Eurasia and northern Africa were first surveyed for the presence of the T→C transition at nucleotide position 16298, a mutation which has previously been shown to characterize haplogroup V mtDNAs. All mtDNAs with this mutation were then screened for a number of diagnostic RFLP sites, revealing two major subsets of mtDNAs. One is haplogroup V proper, and the other has been termed “pre*V,” since it predates V phylogenetically. The rather uncommon pre*V tends to be scattered throughout Europe (and northwestern Africa), whereas V attains two peaks of frequency: one situated in southwestern Europe and one in the Saami of northern Scandinavia. Geographical distributions and ages support the scenario that pre*V originated in Europe before the Last Glacial Maximum (LGM), whereas the more recently derived haplogroup V arose in a southwestern European refugium soon after the LGM. The arrival of V in eastern/central Europe, however, occurred much later, possibly with (post-)Neolithic contacts. The distribution of haplogroup V mtDNAs in modern European populations would thus, at least in part, reflect the pattern of postglacial human recolonization from that refugium, affecting even the Saami. Overall, the present study shows that the dissection of mtDNA variation into small and well-defined evolutionary units is an essential step in the identification of spatial frequency patterns. Mass screening of a few markers identified using complete mtDNA sequences promises to be an efficient strategy for inferring features of human prehistory. PMID:11517423

Ultrashort echo time magnetization transfer (UTE-MT) imaging of cortical bone.

PubMed

Chang, Eric Y; Bae, Won C; Shao, Hongda; Biswas, Reni; Li, Shihong; Chen, Jun; Patil, Shantanu; Healey, Robert; D'Lima, Darryl D; Chung, Christine B; Du, Jiang

2015-07-01

Magnetization transfer (MT) imaging is one way to indirectly assess pools of protons with fast transverse relaxation. However, conventional MT imaging sequences are not applicable to short T2 tissues such as cortical bone. Ultrashort echo time (UTE) sequences with TE values as low as 8 µs can detect signals from different water components in cortical bone. In this study we aim to evaluate two-dimensional UTE-MT imaging of cortical bone and its application in assessing cortical bone porosity as measured by micro-computed tomography (μCT) and biomechanical properties. In total, 38 human cadaveric distal femur and proximal tibia bones were sectioned to produce 122 rectangular pieces of cortical bone for quantitative UTE-MT MR imaging, μCT, and biomechanical testing. Off-resonance saturation ratios (OSRs) with a series of MT pulse frequency offsets (Δf) were calculated and compared with porosity assessed with μCT, as well as elastic (modulus, yield stress, and strain) and failure (ultimate stress, failure strain, and energy) properties, using Pearson correlation and linear regression. A moderately strong negative correlation was observed between OSR and μCT porosity (R(2)  = 0.46-0.51), while a moderate positive correlation was observed between OSR and yield stress (R(2)  = 0.25-0.30) and failure stress (R(2)  = 0.31-0.35), and a weak positive correlation (R(2)  = 0.09-0.12) between OSR and Young's modulus at all off-resonance saturation frequencies. OSR determined with the UTE-MT sequence provides quantitative information on cortical bone and is sensitive to μCT porosity and biomechanical function. Copyright © 2015 John Wiley & Sons, Ltd.

Novel Scalable 3-D MT Inverse Solver

NASA Astrophysics Data System (ADS)

Kuvshinov, A. V.; Kruglyakov, M.; Geraskin, A.

2016-12-01

We present a new, robust and fast, three-dimensional (3-D) magnetotelluric (MT) inverse solver. As a forward modelling engine a highly-scalable solver extrEMe [1] is used. The (regularized) inversion is based on an iterative gradient-type optimization (quasi-Newton method) and exploits adjoint sources approach for fast calculation of the gradient of the misfit. The inverse solver is able to deal with highly detailed and contrasting models, allows for working (separately or jointly) with any type of MT (single-site and/or inter-site) responses, and supports massive parallelization. Different parallelization strategies implemented in the code allow for optimal usage of available computational resources for a given problem set up. To parameterize an inverse domain a mask approach is implemented, which means that one can merge any subset of forward modelling cells in order to account for (usually) irregular distribution of observation sites. We report results of 3-D numerical experiments aimed at analysing the robustness, performance and scalability of the code. In particular, our computational experiments carried out at different platforms ranging from modern laptops to high-performance clusters demonstrate practically linear scalability of the code up to thousands of nodes. 1. Kruglyakov, M., A. Geraskin, A. Kuvshinov, 2016. Novel accurate and scalable 3-D MT forward solver based on a contracting integral equation method, Computers and Geosciences, in press.

Palaeomagnetic refinement of the eruption ages of Holocene lava flows, and implications for the eruptive history of the Tongariro Volcanic Centre, New Zealand

NASA Astrophysics Data System (ADS)

Greve, Annika; Turner, Gillian M.; Conway, Chris E.; Townsend, Dougal B.; Gamble, John A.; Leonard, Graham S.

2016-11-01

We present a detailed palaeomagnetic study from 35 sites on Holocene lava flows of the Tongariro Volcanic Centre, central North Island, New Zealand. Prior to the study the eruption ages of these flows were constrained to within a few thousand years by recently published high-precision 40Ar/39Ar geochronological data and tephrostratigraphic controls. Correlation of flow mean palaeomagnetic directions with a recently published continuous sediment record from Lake Mavora, Fiordland, allows us to reduce the age uncertainty to 300-500 yr in some cases. Our refined ages significantly improve the chronology of Holocene effusive eruptions of the volcanoes of the Tongariro Volcanic Centre. For instance, differences in the palaeomagnetic directions recorded by lavas from the voluminous Iwikau and Rangataua members suggest that individual effusive periods lasted up to thousands of years and that these bursts have been irregularly spaced over time. While over the last few millennia the effusive eruptive activity from Mt Ruapehu has been relatively quiet, the very young age (200-500 BP) of a Red Crater sourced flow suggests that effusive activity around Mt Tongariro lasted into the past few centuries. This adds an important hazard context to the historical record, which has otherwise comprised frequent relatively small, tephra producing, explosive eruptions without the production of lava flows.

Synthetic Modeling of A Geothermal System Using Audio-magnetotelluric (AMT) and Magnetotelluric (MT)

NASA Astrophysics Data System (ADS)

Mega Saputra, Rifki; Widodo

2017-04-01

Indonesia has 40% of the world’s potential geothermal resources with estimated capacity of 28,910 MW. Generally, the characteristic of the geothermal system in Indonesia is liquid-dominated systems, which driven by volcanic activities. In geothermal exploration, electromagnetic methods are used to map structures that could host potential reservoirs and source rocks. We want to know the responses of a geothermal system using synthetic data of Audio-magnetotelluric (AMT) and Magnetotelluric (MT). Due to frequency range, AMT and MT data can resolve the shallow and deeper structure, respectively. 1-D models have been performed using AMT and MT data. The results indicate that AMT and MT data give detailed conductivity distribution of geothermal structure.

Mt. Spurr's 1992 eruptions

USGS Publications Warehouse

1993-01-01

On 27 June, 1992, the Crater Peak vent on the south side of Mt. Spurr awoke from 39 years of dormancy and burst into sub-plinian eruption after 10 months of elevated seismicity. Two more eruptions followed in August and September. The volcano lies 125 km west of Anchorage, Alaska's largest city and an important international hub for air travel. The Alaska Volcano Observatory (AVO) was able to warn communities and the aviation industry well in advance of these eruptions.

Targeting MT1-MMP as an ImmunoPET-Based Strategy for Imaging Gliomas

PubMed Central

Oteo, M.; Romero, E.; Cámara, J. A.; de Martino, A.; Arroyo, A. G.; Morcillo, M. Á.; Squatrito, M.; Martinez-Torrecuadrada, J. L.; Mulero, F.

2016-01-01

Background A critical challenge in the management of Glioblastoma Multiforme (GBM) tumors is the accurate diagnosis and assessment of tumor progression in a noninvasive manner. We have identified Membrane-type 1 matrix metalloproteinase (MT1-MMP) as an attractive biomarker for GBM imaging since this protein is actively involved in tumor growth and progression, correlates with tumor grade and is closely associated with poor prognosis in GBM patients. Here, we report the development of an immunoPET tracer for effective detection of MT1-MMP in GBM models. Methods An anti-human MT1-MMP monoclonal antibody (mAb), LEM2/15, was conjugated to p-isothiocyanatobenzyl-desferrioxamine (DFO-NCS) for 89Zr labeling. Biodistribution and PET imaging studies were performed in xenograft mice bearing human GBM cells (U251) expressing MT1-MMP and non-expressing breast carcinoma cells (MCF-7) as negative control. Two orthotopic brain GBM models, patient-derived neurospheres (TS543) and U251 cells, with different degrees of blood-brain barrier (BBB) disruption were also used for PET imaging experiments. Results 89Zr labeling of DFO-LEM2/15 was achieved with high yield (>90%) and specific activity (78.5 MBq/mg). Biodistribution experiments indicated that 89Zr-DFO-LEM2/15 showed excellent potential as a radiotracer for detection of MT1-MMP positive GBM tumors. PET imaging also indicated a specific and prominent 89Zr-DFO-LEM2/15 uptake in MT1-MMP+ U251 GBM tumors compared to MT1-MMP- MCF-7 breast tumors. Results obtained in orthotopic brain GBM models revealed a high dependence of a disrupted BBB for tracer penetrance into tumors. 89Zr-DFO-LEM2/15 showed much higher accumulation in TS543 tumors with a highly disrupted BBB than in U251 orthotopic model in which the BBB permeability was only partially increased. Histological analysis confirmed the specificity of the immunoconjugate in all GBM models. Conclusion A new anti MT1-MMP-mAb tracer, 89Zr-DFO-LEM2/15, was synthesized efficiently. In

Use of Modality and Negation in Semantically-Informed Syntactic MT

DTIC Science & Technology

2012-06-01

Longman Dictionary of Contemporary English (LDOCE). 422 Baker et al. Modality and Negation in SIMT We produced the full English MN lexicon semi...English sentence pairs, and a bilingual dictionary with 113,911 entries. For our development and test sets, we split the NIST MT-08 test set into two...for combining MT and semantics (termed distillation) to answer the informa- tion needs of monolingual speakers using multilingual sources. Proper

Asian affinities and continental radiation of the four founding Native American mtDNAs.

PubMed Central

Torroni, A; Schurr, T G; Cabell, M F; Brown, M D; Neel, J V; Larsen, M; Smith, D G; Vullo, C M; Wallace, D C

1993-01-01

The mtDNA variation of 321 individuals from 17 Native American populations was examined by high-resolution restriction endonuclease analysis. All mtDNAs were amplified from a variety of sources by using PCR. The mtDNA of a subset of 38 of these individuals was also analyzed by D-loop sequencing. The resulting data were combined with previous mtDNA data from five other Native American tribes, as well as with data from a variety of Asian populations, and were used to deduce the phylogenetic relationships between mtDNAs and to estimate sequence divergences. This analysis revealed the presence of four haplotype groups (haplogroups A, B, C, and D) in the Amerind, but only one haplogroup (A) in the Na-Dene, and confirmed the independent origins of the Amerinds and the Na-Dene. Further, each haplogroup appeared to have been founded by a single mtDNA haplotype, a result which is consistent with a hypothesized founder effect. Most of the variation within haplogroups was tribal specific, that is, it occurred as tribal private polymorphisms. These observations suggest that the process of tribalization began early in the history of the Amerinds, with relatively little intertribal genetic exchange occurring subsequently. The sequencing of 341 nucleotides in the mtDNA D-loop revealed that the D-loop sequence variation correlated strongly with the four haplogroups defined by restriction analysis, and it indicated that the D-loop variation, like the haplotype variation, arose predominantly after the migration of the ancestral Amerinds across the Bering land bridge. Images Figure 4 PMID:7688932

Episodic weakness due to mitochondrial DNA MT-ATP6/8 mutations.

PubMed

Auré, Karine; Dubourg, Odile; Jardel, Claude; Clarysse, Lucie; Sternberg, Damien; Fournier, Emmanuel; Laforêt, Pascal; Streichenberger, Nathalie; Petiot, Philippe; Gervais-Bernard, Hélène; Vial, Christophe; Bedat-Millet, Anne-Laure; Drouin-Garraud, Valérie; Bouillaud, Frédéric; Vandier, Christophe; Fontaine, Bertrand; Lombès, Anne

2013-11-19

To report that homoplasmic deleterious mutations in the mitochondrial DNA MT-ATP6/8 genes may be responsible for acute episodes of limb weakness mimicking periodic paralysis due to channelopathies and dramatically responding to acetazolamide. Mitochondrial DNA sequencing and restriction PCR, oxidative phosphorylation functional assays, reactive oxygen species metabolism, and patch-clamp technique in cultured skin fibroblasts. Occurrence of a typical MELAS (mitochondrial encephalopathy with lactic acidosis and stroke-like episodes) syndrome in a single member of a large pedigree with episodic weakness associated with a later-onset distal motor neuropathy led to the disclosure of 2 deleterious mitochondrial DNA mutations. The MT-ATP6 m.9185T>C p.Leu220Pro mutation, previously associated with Leigh syndrome, was present in all family members, while the MT-TL1 m.3271T>C mutation, a known cause of MELAS syndrome, was observed in the sole patient with MELAS presentation. Significant defect of complexes V and I as well as oxidative stress were observed in both primary fibroblasts and cybrid cells with 100% m.9185T>C mutation. Permanent plasma membrane depolarization and altered permeability to K(+) in fibroblasts provided a link with the paralysis episodes. Screening of 9 patients, based on their clinical phenotype, identified 4 patients with similar deleterious MT-ATP6 mutations (twice m.9185T>C and once m.9176T>C or m.8893T>C). A fifth patient presented with an original potentially deleterious MT-ATP8 mutation (m.8403T>C). All mutations were associated with almost-normal complex V activity but significant oxidative stress and permanent plasma membrane depolarization. Homoplasmic mutations in the MT-ATP6/8 genes may cause episodic weakness responding to acetazolamide treatment.

Recombinant expression of thermostable processive MtEG5 endoglucanase and its synergism with MtLPMO from Myceliophthora thermophila during the hydrolysis of lignocellulosic substrates.

PubMed

Karnaouri, Anthi; Muraleedharan, Madhu Nair; Dimarogona, Maria; Topakas, Evangelos; Rova, Ulrika; Sandgren, Mats; Christakopoulos, Paul

2017-01-01

Filamentous fungi are among the most powerful cellulolytic organisms in terrestrial ecosystems. To perform the degradation of lignocellulosic substrates, these microorganisms employ both hydrolytic and oxidative mechanisms that involve the secretion and synergism of a wide variety of enzymes. Interactions between these enzymes occur on the level of saccharification, i.e., the release of neutral and oxidized products, but sometimes also reflected in the substrate liquefaction. Although the synergism regarding the yield of neutral sugars has been extensively studied, further studies should focus on the oxidized sugars, as well as the effect of enzyme combinations on the viscosity properties of the substrates. In the present study, the heterologous expression of an endoglucanase (EG) and its combined activity together with a lytic polysaccharide monooxygenase (LPMO), both from the thermophilic fungus Myceliophthora thermophila , are described. The EG gene, belonging to the glycoside hydrolase family 5, was functionally expressed in the methylotrophic yeast Pichia pastoris . The produced Mt EG5A (75 kDa) featured remarkable thermal stability and showed high specific activity on microcrystalline cellulose compared to CMC, which is indicative of its processivity properties. The enzyme was capable of releasing high amounts of cellobiose from wheat straw, birch, and spruce biomass. Addition of Mt LPMO9 together with Mt EG5A showed enhanced enzymatic hydrolysis yields against regenerated amorphous cellulose (PASC) by improving the release not only of the neutral but also of the oxidized sugars. Assessment of activity of Mt EG5A on the reduction of viscosity of PASC and pretreated wheat straw using dynamic viscosity measurements revealed that the enzyme is able to perform liquefaction of the model substrate and the natural lignocellulosic material, while when added together with Mt LPMO9, no further synergistic effect was observed. The endoglucanase Mt EG5A from the

No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation

PubMed Central

Hellberg, Michael E

2006-01-01

Background The mitochondrial DNA (mtDNA) of most animals evolves more rapidly than nuclear DNA, and often shows higher levels of intraspecific polymorphism and population subdivision. The mtDNA of anthozoans (corals, sea fans, and their kin), by contrast, appears to evolve slowly. Slow mtDNA evolution has been reported for several anthozoans, however this slow pace has been difficult to put in phylogenetic context without parallel surveys of nuclear variation or calibrated rates of synonymous substitution that could permit quantitative rate comparisons across taxa. Here, I survey variation in the coding region of a mitochondrial gene from a coral species (Balanophyllia elegans) known to possess high levels of nuclear gene variation, and estimate synonymous rates of mtDNA substitution by comparison to another coral (Tubastrea coccinea). Results The mtDNA surveyed (630 bp of cytochrome oxidase subunit I) was invariant among individuals sampled from 18 populations spanning 3000 km of the range of B. elegans, despite high levels of variation and population subdivision for allozymes over these same populations. The synonymous substitution rate between B. elegans and T. coccinea (0.05%/site/106 years) is similar to that in most plants, but 50–100 times lower than rates typical for most animals. In addition, while substitutions to mtDNA in most animals exhibit a strong bias toward transitions, mtDNA from these corals does not. Conclusion Slow rates of mitochondrial nucleotide substitution result in low levels of intraspecific mtDNA variation in corals, even when nuclear loci vary. Slow mtDNA evolution appears to be the basal condition among eukaryotes. mtDNA substitution rates switch from slow to fast abruptly and unidirectionally. This switch may stem from the loss of just one or a few mitochondrion-specific DNA repair or replication genes. PMID:16542456

Background sequence characteristics influence the occurrence and severity of disease-causing mtDNA mutations

PubMed Central

Wei, Wei; Hudson, Gavin

2017-01-01

Inherited mitochondrial DNA (mtDNA) mutations have emerged as a common cause of human disease, with mutations occurring multiple times in the world population. The clinical presentation of three pathogenic mtDNA mutations is strongly associated with a background mtDNA haplogroup, but it is not clear whether this is limited to a handful of examples or is a more general phenomenon. To address this, we determined the characteristics of 30,506 mtDNA sequences sampled globally. After performing several quality control steps, we ascribed an established pathogenicity score to the major alleles for each sequence. The mean pathogenicity score for known disease-causing mutations was significantly different between mtDNA macro-haplogroups. Several mutations were observed across all haplogroup backgrounds, whereas others were only observed on specific clades. In some instances this reflected a founder effect, but in others, the mutation recurred but only within the same phylogenetic cluster. Sequence diversity estimates showed that disease-causing mutations were more frequent on young sequences, and genomes with two or more disease-causing mutations were more common than expected by chance. These findings implicate the mtDNA background more generally in recurrent mutation events that have been purified through natural selection in older populations. This provides an explanation for the low frequency of mtDNA disease reported in specific ethnic groups. PMID:29253894

Phylogenetic analysis of mtDNA lineages in South American mummies.

PubMed

Monsalve, M V; Cardenas, F; Guhl, F; Delaney, A D; Devine, D V

1996-07-01

Some studies of mtDNA propose that contemporary Amerindians have descended from four haplotype groups, each defined by specific sets of polymorphisms. One recent study also found evidence of other potential founder haplotypes. We wanted to determine whether the four haplotypes in modern populations were also present in ancient South American aboriginals. We subjected mtDNA from Colombian mummies (470 to 1849 AD) to PCR amplification and restriction endonuclease analysis. The mtDNA D-loop region was surveyed for sequence variation by restriction analysis and a segment of this region was sequenced for each mummy to characterize the haplotypes. Our mummies exhibited three of the four major characteristic haplotypes of Amerindian populations defined by four markers. With sequence data obtained in the ancient samples and published data on contemporary Amerindians it was possible to infer the origin of these six mummies.

Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions.

PubMed

Belmonte, Frances R; Martin, James L; Frescura, Kristin; Damas, Joana; Pereira, Filipe; Tarnopolsky, Mark A; Kaufman, Brett A

2016-04-28

Mitochondrial DNA (mtDNA) mutations are a common cause of primary mitochondrial disorders, and have also been implicated in a broad collection of conditions, including aging, neurodegeneration, and cancer. Prevalent among these pathogenic variants are mtDNA deletions, which show a strong bias for the loss of sequence in the major arc between, but not including, the heavy and light strand origins of replication. Because individual mtDNA deletions can accumulate focally, occur with multiple mixed breakpoints, and in the presence of normal mtDNA sequences, methods that detect broad-spectrum mutations with enhanced sensitivity and limited costs have both research and clinical applications. In this study, we evaluated semi-quantitative and digital PCR-based methods of mtDNA deletion detection using double-stranded reference templates or biological samples. Our aim was to describe key experimental assay parameters that will enable the analysis of low levels or small differences in mtDNA deletion load during disease progression, with limited false-positive detection. We determined that the digital PCR method significantly improved mtDNA deletion detection sensitivity through absolute quantitation, improved precision and reduced assay standard error.

Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions

PubMed Central

Belmonte, Frances R.; Martin, James L.; Frescura, Kristin; Damas, Joana; Pereira, Filipe; Tarnopolsky, Mark A.; Kaufman, Brett A.

2016-01-01

Mitochondrial DNA (mtDNA) mutations are a common cause of primary mitochondrial disorders, and have also been implicated in a broad collection of conditions, including aging, neurodegeneration, and cancer. Prevalent among these pathogenic variants are mtDNA deletions, which show a strong bias for the loss of sequence in the major arc between, but not including, the heavy and light strand origins of replication. Because individual mtDNA deletions can accumulate focally, occur with multiple mixed breakpoints, and in the presence of normal mtDNA sequences, methods that detect broad-spectrum mutations with enhanced sensitivity and limited costs have both research and clinical applications. In this study, we evaluated semi-quantitative and digital PCR-based methods of mtDNA deletion detection using double-stranded reference templates or biological samples. Our aim was to describe key experimental assay parameters that will enable the analysis of low levels or small differences in mtDNA deletion load during disease progression, with limited false-positive detection. We determined that the digital PCR method significantly improved mtDNA deletion detection sensitivity through absolute quantitation, improved precision and reduced assay standard error. PMID:27122135

Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales.

PubMed

Palumbi, S R; Baker, C S

1994-05-01

Powerful analyses of population structure require information from multiple genetic loci. To help develop a molecular toolbox for obtaining this information, we have designed universal oligonucleotide primers that span conserved intron-exon junctions in a wide variety of animal phyla. We test the utility of exon-primed, intron-crossing amplifications by analyzing the variability of actin intron sequences from humpback, blue, and bowhead whales and comparing the results with mitochondrial DNA (mtDNA) haplotype data. Humpback actin introns fall into two major clades that exist in different frequencies in different oceanic populations. It is surprising that Hawaii and California populations, which are very distinct in mtDNAs, are similar in actin intron alleles. This discrepancy between mtDNA and nuclear DNA results may be due either to differences in genetic drift in mitochondrial and nuclear genes or to preferential movement of males, which do not transmit mtDNA to offspring, between separate breeding grounds. Opposing mtDNA and nuclear DNA results can help clarify otherwise hidden patterns of structure in natural populations.

A three-dimensional spatiotemporal receptive field model explains responses of area MT neurons to naturalistic movies

PubMed Central

Nishimoto, Shinji; Gallant, Jack L.

2012-01-01

Area MT has been an important target for studies of motion processing. However, previous neurophysiological studies of MT have used simple stimuli that do not contain many of the motion signals that occur during natural vision. In this study we sought to determine whether views of area MT neurons developed using simple stimuli can account for MT responses under more naturalistic conditions. We recorded responses from macaque area MT neurons during stimulation with naturalistic movies. We then used a quantitative modeling framework to discover which specific mechanisms best predict neuronal responses under these challenging conditions. We find that the simplest model that accurately predicts responses of MT neurons consists of a bank of V1-like filters, each followed by a compressive nonlinearity, a divisive nonlinearity and linear pooling. Inspection of the fit models shows that the excitatory receptive fields of MT neurons tend to lie on a single plane within the three-dimensional spatiotemporal frequency domain, and suppressive receptive fields lie off this plane. However, most excitatory receptive fields form a partial ring in the plane and avoid low temporal frequencies. This receptive field organization ensures that most MT neurons are tuned for velocity but do not tend to respond to ambiguous static textures that are aligned with the direction of motion. In sum, MT responses to naturalistic movies are largely consistent with predictions based on simple stimuli. However, models fit using naturalistic stimuli reveal several novel properties of MT receptive fields that had not been shown in prior experiments. PMID:21994372

Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM)☆

PubMed Central

Parson, Walther; Strobl, Christina; Huber, Gabriela; Zimmermann, Bettina; Gomes, Sibylle M.; Souto, Luis; Fendt, Liane; Delport, Rhena; Langit, Reina; Wootton, Sharon; Lagacé, Robert; Irwin, Jodi

2013-01-01

Insights into the human mitochondrial phylogeny have been primarily achieved by sequencing full mitochondrial genomes (mtGenomes). In forensic genetics (partial) mtGenome information can be used to assign haplotypes to their phylogenetic backgrounds, which may, in turn, have characteristic geographic distributions that would offer useful information in a forensic case. In addition and perhaps even more relevant in the forensic context, haplogroup-specific patterns of mutations form the basis for quality control of mtDNA sequences. The current method for establishing (partial) mtDNA haplotypes is Sanger-type sequencing (STS), which is laborious, time-consuming, and expensive. With the emergence of Next Generation Sequencing (NGS) technologies, the body of available mtDNA data can potentially be extended much more quickly and cost-efficiently. Customized chemistries, laboratory workflows and data analysis packages could support the community and increase the utility of mtDNA analysis in forensics. We have evaluated the performance of mtGenome sequencing using the Personal Genome Machine (PGM) and compared the resulting haplotypes directly with conventional Sanger-type sequencing. A total of 64 mtGenomes (>1 million bases) were established that yielded high concordance with the corresponding STS haplotypes (<0.02% differences). About two-thirds of the differences were observed in or around homopolymeric sequence stretches. In addition, the sequence alignment algorithm employed to align NGS reads played a significant role in the analysis of the data and the resulting mtDNA haplotypes. Further development of alignment software would be desirable to facilitate the application of NGS in mtDNA forensic genetics. PMID:23948325

Joint Inversion of 3d Mt/gravity/magnetic at Pisagua Fault.

NASA Astrophysics Data System (ADS)

Bascur, J.; Saez, P.; Tapia, R.; Humpire, M.

2017-12-01

This work shows the results of a joint inversion at Pisagua Fault using 3D Magnetotellurics (MT), gravity and regional magnetic data. The MT survey has a poor coverage of study area with only 21 stations; however, it allows to detect a low resistivity zone aligned with the Pisagua Fault trace that it is interpreted as a damage zone. The integration of gravity and magnetic data, which have more dense sampling and coverage, adds more detail and resolution to the detected low resistivity structure and helps to improve the structure interpretation using the resulted models (density, magnetic-susceptibility and electrical resistivity). The joint inversion process minimizes a multiple target function which includes the data misfit, model roughness and coupling norms (crossgradient and direct relations) for all geophysical methods considered (MT, gravity and magnetic). This process is solved iteratively using the Gauss-Newton method which updates the model of each geophysical method improving its individual data misfit, model roughness and the coupling with the other geophysical models. For solving the model updates of magnetic and gravity methods were developed dedicated 3D inversion software codes which include the coupling norms with additionals geophysical parameters. The model update of the 3D MT is calculated using an iterative method which sequentially filters the priority model and the output model of a single 3D MT inversion process for obtaining the resistivity model coupled solution with the gravity and magnetic methods.

RadNet Air Data From Kalispell, MT

EPA Pesticide Factsheets

This page presents radiation air monitoring and air filter analysis data for Kalispell, MT from EPA's RadNet system. RadNet is a nationwide network of monitoring stations that measure radiation in air, drinking water and precipitation.

RadNet Air Data From Billings, MT

EPA Pesticide Factsheets

This page presents radiation air monitoring and air filter analysis data for Billings, MT from EPA's RadNet system. RadNet is a nationwide network of monitoring stations that measure radiation in air, drinking water and precipitation.

Recombination or mutational hot spots in human mtDNA?

PubMed

Innan, Hideki; Nordborg, Magnus

2002-07-01

Awadalla, Eyre-Walker, and Maynard Smith (1999) recently argued that there might be recombination in human mitochondrial DNA (mtDNA). Their claim was based on their observation of decaying linkage disequilibrium (LD) as a function of physical distance. Their study was much criticized, and follow-up studies have failed to find any evidence for recombination. We argue that the criticisms levied, even if correct, could not possibly explain the findings of Awadalla, Eyre-Walker, and Maynard Smith (1999). Nonetheless, the test proposed by Awadalla, Eyre-Walker, and Maynard Smith (1999 ) is not robust because recombination is not the only explanation for decay of LD. We show that such a pattern can be caused by mutational hot spots as well. However, a closer look at the data suggests that the pattern observed was not caused by mutational hot spots but rather by chance. Thus, there appears to be no evidence for recombination in the mtDNA polymorphism data. In conclusion, we discuss the possibility of detecting recombination in mtDNA and the implications of its existence.

OXPHOS Defects Due to mtDNA Mutations: Glutamine to the Rescue!

PubMed

Chinopoulos, Christos

2018-06-05

Mutations in mtDNA associated with OXPHOS defects preclude energy harnessing by OXPHOS. The work of Chen et al. (2018) is previewed, reporting flux pathways of glutamine catabolism in mtDNA mutant cells yielding high-energy phosphates through substrate-level phosphorylation and the influence exerted by the severity of OXPHOS impairment. Copyright © 2018 Elsevier Inc. All rights reserved.

Myopathic mtDNA Depletion Syndrome Due to Mutation in TK2 Gene.

PubMed

Martín-Hernández, Elena; García-Silva, María Teresa; Quijada-Fraile, Pilar; Rodríguez-García, María Elena; Hernández-Laín, Aurelio; Coca-Robinot, David; Rivera, Henry; Fernández-Toral, Joaquín; Arenas, Joaquín; Martín, MiguelÁngel; Martínez-Azorín, Francisco

2016-02-29

Whole-exome sequencing (WES) was used to identify the disease gene(s) in a Spanish girl with failure to thrive, muscle weakness, mild facial weakness, elevated creatine kinase (CK), deficiency of mitochondrial complex III and depletion of mtDNA. With WES data, it was possible to get the whole mtDNA sequencing and discard any pathogenic variant in this genome. The analysis of whole exome uncovered a homozygous pathogenic mutation in Thymidine kinase 2 gene (TK2; NM_004614.4:c.323C>T, p.T108M). TK2 mutations have been identified mainly in patients with the myopathic form of mtDNA depletion syndromes (MDS). This patient presents an atypical TK2 related-myopathic form of MDS, because despite having a very low content of mtDNA (<20%), she presents a slower and less severe evolution of the disease. In conclusion, our data confirm the role of TK2 gene in MDS and expanded the phenotypic spectrum.

Can indirect tests detect a known recombination event in human mtDNA?

PubMed

White, Daniel James; Gemmell, Neil John

2009-07-01

Whether human mitochondrial DNA (mtDNA) recombines sufficiently to influence its evolution, evolutionary analysis, and disease etiology, remains equivocal. Overall, evidence from indirect studies of population genetic data suggests that recombination is not occurring at detectable levels. This may be explained by no, or low, recombination or, alternatively, current indirect tests may be incapable of detecting recombination in human mtDNA. To investigate the latter, we have tested whether six well-established indirect tests of recombination could detect recombination in a human mtDNA data set, in which its occurrence had been empirically confirmed. Three showed statistical evidence for recombination (r(2) vs. distance, the Homoplasy test, Neighborhood Similarity Score), and three did not (D' vs. distance, Max Chi Squared, Pairwise Homoplasy Index). Possible reasons for detection failure are discussed. Further, evidence from earlier studies suggesting a lack of recombination in mtDNA in humans is reconsidered, taking into account the appropriateness of the tests used, based on our new findings.

Lahar—River of volcanic mud and debris

USGS Publications Warehouse

Major, Jon J.; Pierson, Thomas C.; Vallance, James W.

2018-05-09

Lahar, an Indonesian word for volcanic mudflow, is a mixture of water, mud, and volcanic rock flowing swiftly along a channel draining a volcano. Lahars can form during or after eruptions, or even during periods of inactivity. They are among the greatest threats volcanoes pose to people and property. Lahars can occur with little to no warning, and may travel great distances at high speeds, destroying or burying everything in their paths.Lahars form in many ways. They commonly occur when eruptions melt snow and ice on snow-clad volcanoes; when rains fall on steep slopes covered with fresh volcanic ash; when crater lakes, volcano glaciers or lakes dammed by volcanic debris suddenly release water; and when volcanic landslides evolve into flowing debris. Lahars are especially likely to occur at erupting or recently active volcanoes.Because lahars are so hazardous, U.S. Geological Survey scientists pay them close attention. They study lahar deposits and limits of inundation, model flow behavior, develop lahar-hazard maps, and work with community leaders and governmental authorities to help them understand and minimize the risks of devastating lahars.

76 FR 41725 - Proposed Amendment of Class E Airspace; Miles City, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-15

... Class E Airspace; Miles City, MT AGENCY: Federal Aviation Administration (FAA), DOT. ACTION: Notice of..., Miles City, MT, to accommodate aircraft using new Area Navigation (RNAV) Global Positioning System (GPS... airspace and Class E airspace extending upward from 700 feet above the surface at Frank Wiley Field, Miles...

78 FR 45474 - Proposed Establishment of Class E Airspace; Cut Bank, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-29

...-0532; Airspace Docket No. 13-ANM-21] Proposed Establishment of Class E Airspace; Cut Bank, MT AGENCY... action proposes to establish Class E airspace at the Cut Bank VHF Omni-Directional Radio Range Tactical Air Navigational Aid (VORTAC) navigation aid, Cut Bank, MT, to facilitate vectoring of Instrument...

Spectral Signatures of Feedforward and Recurrent Circuitry in Monkey Area MT.

PubMed

Solomon, Selina S; Morley, John W; Solomon, Samuel G

2017-05-01

Recordings of local field potential (LFP) in the visual cortex can show rhythmic activity at gamma frequencies (30-100 Hz). While the gamma rhythms in the primary visual cortex have been well studied, the structural and functional characteristics of gamma rhythms in extrastriate visual cortex are less clear. Here, we studied the spatial distribution and functional specificity of gamma rhythms in extrastriate middle temporal (MT) area of visual cortex in marmoset monkeys. We found that moving gratings induced narrowband gamma rhythms across cortical layers that were coherent across much of area MT. Moving dot fields instead induced a broadband increase in LFP in middle and upper layers, with weaker narrowband gamma rhythms in deeper layers. The stimulus dependence of LFP response in middle and upper layers of area MT appears to reflect the presence (gratings) or absence (dot fields and other textures) of strongly oriented contours. Our results suggest that gamma rhythms in these layers are propagated from earlier visual cortex, while those in the deeper layers may emerge in area MT. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

The CAFE Experiment: A Joint Seismic and MT Investigation of the Cascadia Subduction System

DTIC Science & Technology

2013-02-01

In this thesis we present results from inversion of data using dense arrays of collocated seismic and magnetotelluric stations located in the Cascadia...implicit in the standard MT inversion provides tools that enable us to generate a more accurate MT model. This final MT model clearly demonstrates...references within, Hacker, 2008) have given us the tools to better interpret geophysical evidence. Improvements in the thermal modeling of subduction zones

Reduced mtDNA copy number increases the sensitivity of tumor cells to chemotherapeutic drugs.

PubMed

Mei, H; Sun, S; Bai, Y; Chen, Y; Chai, R; Li, H

2015-04-02

Many cancer drugs are toxic to cells by activating apoptotic pathways. Previous studies have shown that mitochondria have key roles in apoptosis in mammalian cells, but the role of mitochondrial DNA (mtDNA) copy number variation in the pathogenesis of tumor cell apoptosis remains largely unknown. We used the HEp-2, HNE2, and A549 tumor cell lines to explore the relationship between mtDNA copy number variation and cell apoptosis. We first induced apoptosis in three tumor cell lines and one normal adult human skin fibroblast cell line (HSF) with cisplatin (DDP) or doxorubicin (DOX) treatment and found that the mtDNA copy number significantly increased in apoptotic tumor cells, but not in HSF cells. We then downregulated the mtDNA copy number by transfection with shRNA-TFAM plasmids or treatment with ethidium bromide and found that the sensitivity of tumor cells to DDP or DOX was significantly increased. Furthermore, we observed that levels of reactive oxygen species (ROS) increased significantly in tumor cells with lower mtDNA copy numbers, and this might be related to a low level of antioxidant gene expression. Finally, we rescued the increase of ROS in tumor cells with lipoic acid or N-acetyl-L-cysteine and found that the apoptosis rate decreased. Our studies suggest that the increase of mtDNA copy number is a self-protective mechanism of tumor cells to prevent apoptosis and that reduced mtDNA copy number increases ROS levels in tumor cells, increases the tumor cells' sensitivity to chemotherapeutic drugs, and increases the rate of apoptosis. This research provides evidence that mtDNA copy number variation might be a promising new therapeutic target for the clinical treatment of tumors.

WSJointInv2D-MT-DCR: An efficient joint two-dimensional magnetotelluric and direct current resistivity inversion

NASA Astrophysics Data System (ADS)

Amatyakul, Puwis; Vachiratienchai, Chatchai; Siripunvaraporn, Weerachai

2017-05-01

An efficient joint two-dimensional direct current resistivity (DCR) and magnetotelluric (MT) inversion, referred to as WSJointInv2D-MT-DCR, was developed with FORTRAN 95 based on the data space Occam's inversion algorithm. Our joint inversion software can be used to invert just the MT data or the DCR data, or invert both data sets simultaneously to get the electrical resistivity structures. Since both MT and DCR surveys yield the same resistivity structures, the two data types enhance each other leading to a better interpretation. Two synthetic and a real field survey are used here to demonstrate that the joint DCR and MT surveys can help constrain each other to reduce the ambiguities occurring when inverting the DCR or MT alone. The DCR data increases the lateral resolution of the near surface structures while the MT data reveals the deeper structures. When the MT apparent resistivity suffers from the static shift, the DCR apparent resistivity can serve as a replacement for the estimation of the static shift factor using the joint inversion. In addition, we also used these examples to show the efficiency of our joint inversion code. With the availability of our new joint inversion software, we expect the number of joint DCR and MT surveys to increase in the future.

Characterization of mtDNA haplogroups in 14 Mexican indigenous populations.

PubMed

Peñaloza-Espinosa, Rosenda I; Arenas-Aranda, Diego; Cerda-Flores, Ricardo M; Buentello-Malo, Leonor; González-Valencia, Gerardo; Torres, Javier; Alvarez, Berenice; Mendoza, Irma; Flores, Mario; Sandoval, Lucila; Loeza, Francisco; Ramos, Irma; Muñoz, Leopoldo; Salamanca, Fabio

2007-06-01

In this descriptive study we investigated the genetic structure of 513 Mexican indigenous subjects grouped in 14 populations (Mixteca-Alta, Mixteca-Baja, Otomi, Purépecha, Tzeltal, Tarahumara, Huichol, Nahua-Atocpan, Nahua-Xochimilco, Nahua-Zitlala, Nahua-Chilacachapa, Nahua-Ixhuatlancillo, Nahua-Necoxtla, and Nahua-Coyolillo) based on mtDNA haplogroups. These communities are geographically and culturally isolated; parents and grandparents were born in the community. Our data show that 98.6% of the mtDNA was distributed in haplogroups A1, A2, B1, B2, C1, C2, D1, and D2. Haplotype X6 was present in the Tarahumara (1/53) and Huichol (3/15), and haplotype L was present in the Nahua-Coyolillo (3/38). The first two principal components accounted for 95.9% of the total variation in the sample. The mtDNA haplogroup frequencies in the Purépecha and Zitlala were intermediate to cluster 1 (Otomi, Nahua-Ixhuatlancillo, Nahua-Xochimilco, Mixteca-Baja, and Tzeltal) and cluster 2 (Nahua-Necoxtla, Nahua-Atocpan, and Nahua-Chilacachapa). The Huichol, Tarahumara, Mixteca-Alta, and Nahua-Coyolillo were separated from the rest of the populations. According to these findings, the distribution of mtDNA haplogroups found in Mexican indigenous groups is similar to other Amerindian haplogroups, except for the African haplogroup found in one population.

Association study of ERβ, AR, and CYP19A1 genes and MtF transsexualism.

PubMed

Fernández, Rosa; Esteva, Isabel; Gómez-Gil, Esther; Rumbo, Teresa; Almaraz, Mari Cruz; Roda, Ester; Haro-Mora, Juan-Jesús; Guillamón, Antonio; Pásaro, Eduardo

2014-12-01

The etiology of male-to-female (MtF) transsexualism is unknown. Both genetic and neurological factors may play an important role. To investigate the possible influence of the genetic factor on the etiology of MtF transsexualism. We carried out a cytogenetic and molecular analysis in 442 MtFs and 473 healthy, age- and geographical origin-matched XY control males. The karyotype was investigated by G-banding and by high-density array in the transsexual group. The molecular analysis involved three tandem variable regions of genes estrogen receptor β (ERβ) (CA tandem repeats in intron 5), androgen receptor (AR) (CAG tandem repeats in exon 1), and CYP19A1 (TTTA tandem repeats in intron 4). The allele and genotype frequencies, after division into short and long alleles, were obtained. We investigated the association between genotype and transsexualism by performing a molecular analysis of three variable regions of genes ERβ, AR, and CYP19A1 in 915 individuals (442 MtFs and 473 control males). Most MtFs showed an unremarkable 46,XY karyotype (97.96%). No specific chromosome aberration was associated with MtF transsexualism, and prevalence of aneuploidy (2.04%) was slightly higher than in the general population. Molecular analyses showed no significant difference in allelic or genotypic distribution of the genes examined between MtFs and controls. Moreover, molecular findings presented no evidence of an association between the sex hormone-related genes (ERβ, AR, and CYP19A1) and MtF transsexualism. The study suggests that the analysis of karyotype provides limited information in these subjects. Variable regions analyzed from ERβ, AR, and CYP19A1 are not associated with MtF transsexualism. Nevertheless, this does not exclude other polymorphic regions not analyzed. © 2014 International Society for Sexual Medicine.

Transportation Observations, Considerations, and Recommendations for Mt. Baker-Snoqualmie National Forest and Mt. Rainier National Park Provided by the Interagency Transportation Assistance Group (TAG) / Alternative Transportation in Parks and Public Land

DOT National Transportation Integrated Search

2007-09-25

A field investigation of the current transportation infrastructure and issues at Mt. Baker-Snoqualmie National Forest and Mt. Rainier National Park by the interagency Transportation Assistance Group (TAG) was conducted September 25-27, 2007, on behal...

Expression of membrane-type 1 matrix metalloproteinase (MT1-MMP) on prostate cancer cell lines.

PubMed

Nagakawa, O; Murakami, K; Yamaura, T; Fujiuchi, Y; Murata, J; Fuse, H; Saiki, I

2000-07-31

Membrane-type metalloproteinase-1 (MT1-MMP) is a transmembrane metalloproteinase, which activates proMMP-2 and expressed on the cell surface in many invasive cancer cells. We investigated the expression of MT1-MMP in prostate cancer cell lines. MT1-MMP protein and mRNA were expressed in PC-3, DU-145 and TSU-pr1 cells (androgen-independent prostate cancer cell lines), but in LNCaP cells (androgen-dependent prostate cancer cell line). MT1-MMP protein was negative and mRNA was low to detect by RT-PCR. Cell lysate of PC-3 cleaved proMMP-2 to the active form. In addition, both hepatocyte growth factor (HGF) and gastrin-releasing peptide (GRP) increased Matrigel invasion and induced the expression of MT1-MMP protein in DU-145 prostate cancer cells. These results suggest that MT1-MMP is indeed the tumor-specific activator of proMMP-2 in androgen-independent prostate cancer cells and plays an important role in the invasive properties of prostate cancer cells.

78 FR 33047 - Humboldt-Toiyabe National Forest, Carson Ranger District Mt. Rose Ski Tahoe-Atoma Area...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-03

... the effects of a proposal from Mt. Rose Ski Tahoe (Mt. Rose) to expand its lift and terrain network... to create the Atoma lift and trail ``Pod'' to the north of the Mt. Rose Highway. The proposed Atoma... facilitate construction and [[Page 33048

Mitochondrial nucleoid clusters protect newly synthesized mtDNA during Doxorubicin- and Ethidium Bromide-induced mitochondrial stress

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alán, Lukáš, E-mail: lukas.alan@fgu.cas.cz; Špaček

Mitochondrial DNA (mtDNA) is compacted in ribonucleoprotein complexes called nucleoids, which can divide or move within the mitochondrial network. Mitochondrial nucleoids are able to aggregate into clusters upon reaction with intercalators such as the mtDNA depletion agent Ethidium Bromide (EB) or anticancer drug Doxorobicin (DXR). However, the exact mechanism of nucleoid clusters formation remains unknown. Resolving these processes may help to elucidate the mechanisms of DXR-induced cardiotoxicity. Therefore, we addressed the role of two key nucleoid proteins; mitochondrial transcription factor A (TFAM) and mitochondrial single-stranded binding protein (mtSSB); in the formation of mitochondrial nucleoid clusters during the action of intercalators.more » We found that both intercalators cause numerous aberrations due to perturbing their native status. By blocking mtDNA replication, both agents also prevented mtDNA association with TFAM, consequently causing nucleoid aggregation into large nucleoid clusters enriched with TFAM, co-existing with the normal nucleoid population. In the later stages of intercalation (> 48 h), TFAM levels were reduced to 25%. In contrast, mtSSB was released from mtDNA and freely distributed within the mitochondrial network. Nucleoid clusters mostly contained nucleoids with newly replicated mtDNA, however the nucleoid population which was not in replication mode remained outside the clusters. Moreover, the nucleoid clusters were enriched with p53, an anti-oncogenic gatekeeper. We suggest that mitochondrial nucleoid clustering is a mechanism for protecting nucleoids with newly replicated DNA against intercalators mediating genotoxic stress. These results provide new insight into the common mitochondrial response to mtDNA stress and can be implied also on DXR-induced mitochondrial cytotoxicity. - Highlights: • The mechanism for mitochondrial nucleoid clustering is proposed. • DNA intercalators (Doxorubicin or Ethidium Bromide) prevent

Leveraging increased cytoplasmic nucleoside kinase activity to target mtDNA and oxidative phosphorylation in AML.

PubMed

Liyanage, Sanduni U; Hurren, Rose; Voisin, Veronique; Bridon, Gaëlle; Wang, Xiaoming; Xu, ChangJiang; MacLean, Neil; Siriwardena, Thirushi P; Gronda, Marcela; Yehudai, Dana; Sriskanthadevan, Shrivani; Avizonis, Daina; Shamas-Din, Aisha; Minden, Mark D; Bader, Gary D; Laposa, Rebecca; Schimmer, Aaron D

2017-05-11

Mitochondrial DNA (mtDNA) biosynthesis requires replication factors and adequate nucleotide pools from the mitochondria and cytoplasm. We performed gene expression profiling analysis of 542 human acute myeloid leukemia (AML) samples and identified 55% with upregulated mtDNA biosynthesis pathway expression compared with normal hematopoietic cells. Genes that support mitochondrial nucleotide pools, including mitochondrial nucleotide transporters and a subset of cytoplasmic nucleoside kinases, were also increased in AML compared with normal hematopoietic samples. Knockdown of cytoplasmic nucleoside kinases reduced mtDNA levels in AML cells, demonstrating their contribution in maintaining mtDNA. To assess cytoplasmic nucleoside kinase pathway activity, we used a nucleoside analog 2'3'-dideoxycytidine (ddC), which is phosphorylated to the activated antimetabolite, 2'3'-dideoxycytidine triphosphate by cytoplasmic nucleoside kinases. ddC is a selective inhibitor of the mitochondrial DNA polymerase γ. ddC was preferentially activated in AML cells compared with normal hematopoietic progenitor cells. ddC treatment inhibited mtDNA replication, oxidative phosphorylation, and induced cytotoxicity in a panel of AML cell lines. Furthermore, ddC preferentially inhibited mtDNA replication in a subset of primary human leukemia cells and selectively targeted leukemia cells while sparing normal progenitor cells. In animal models of human AML, treatment with ddC decreased mtDNA, electron transport chain proteins, and induced tumor regression without toxicity. ddC also targeted leukemic stem cells in secondary AML xenotransplantation assays. Thus, AML cells have increased cytidine nucleoside kinase activity that regulates mtDNA biogenesis and can be leveraged to selectively target oxidative phosphorylation in AML. © 2017 by The American Society of Hematology.

Leveraging increased cytoplasmic nucleoside kinase activity to target mtDNA and oxidative phosphorylation in AML

PubMed Central

Liyanage, Sanduni U.; Hurren, Rose; Voisin, Veronique; Bridon, Gaëlle; Wang, Xiaoming; Xu, ChangJiang; MacLean, Neil; Siriwardena, Thirushi P.; Gronda, Marcela; Yehudai, Dana; Sriskanthadevan, Shrivani; Avizonis, Daina; Shamas-Din, Aisha; Minden, Mark D.; Bader, Gary D.; Laposa, Rebecca

2017-01-01

Mitochondrial DNA (mtDNA) biosynthesis requires replication factors and adequate nucleotide pools from the mitochondria and cytoplasm. We performed gene expression profiling analysis of 542 human acute myeloid leukemia (AML) samples and identified 55% with upregulated mtDNA biosynthesis pathway expression compared with normal hematopoietic cells. Genes that support mitochondrial nucleotide pools, including mitochondrial nucleotide transporters and a subset of cytoplasmic nucleoside kinases, were also increased in AML compared with normal hematopoietic samples. Knockdown of cytoplasmic nucleoside kinases reduced mtDNA levels in AML cells, demonstrating their contribution in maintaining mtDNA. To assess cytoplasmic nucleoside kinase pathway activity, we used a nucleoside analog 2′3′-dideoxycytidine (ddC), which is phosphorylated to the activated antimetabolite, 2′3′-dideoxycytidine triphosphate by cytoplasmic nucleoside kinases. ddC is a selective inhibitor of the mitochondrial DNA polymerase γ. ddC was preferentially activated in AML cells compared with normal hematopoietic progenitor cells. ddC treatment inhibited mtDNA replication, oxidative phosphorylation, and induced cytotoxicity in a panel of AML cell lines. Furthermore, ddC preferentially inhibited mtDNA replication in a subset of primary human leukemia cells and selectively targeted leukemia cells while sparing normal progenitor cells. In animal models of human AML, treatment with ddC decreased mtDNA, electron transport chain proteins, and induced tumor regression without toxicity. ddC also targeted leukemic stem cells in secondary AML xenotransplantation assays. Thus, AML cells have increased cytidine nucleoside kinase activity that regulates mtDNA biogenesis and can be leveraged to selectively target oxidative phosphorylation in AML. PMID:28283480

Presequence-Independent Mitochondrial Import of DNA Ligase Facilitates Establishment of Cell Lines with Reduced mtDNA Copy Number

PubMed Central

Spadafora, Domenico; Kozhukhar, Natalia; Alexeyev, Mikhail F.

2016-01-01

Due to the essential role played by mitochondrial DNA (mtDNA) in cellular physiology and bioenergetics, methods for establishing cell lines with altered mtDNA content are of considerable interest. Here, we report evidence for the existence in mammalian cells of a novel, low- efficiency, presequence-independent pathway for mitochondrial protein import, which facilitates mitochondrial uptake of such proteins as Chlorella virus ligase (ChVlig) and Escherichia coli LigA. Mouse cells engineered to depend on this pathway for mitochondrial import of the LigA protein for mtDNA maintenance had severely (up to >90%) reduced mtDNA content. These observations were used to establish a method for the generation of mouse cell lines with reduced mtDNA copy number by, first, transducing them with a retrovirus encoding LigA, and then inactivating in these transductants endogenous Lig3 with CRISPR-Cas9. Interestingly, mtDNA depletion to an average level of one copy per cell proceeds faster in cells engineered to maintain mtDNA at low copy number. This makes a low-mtDNA copy number phenotype resulting from dependence on mitochondrial import of DNA ligase through presequence-independent pathway potentially useful for rapidly shifting mtDNA heteroplasmy through partial mtDNA depletion. PMID:27031233

Eudialyte-group minerals in rocks of Lovozero layered complex at Mt. Karnasurt and Mt. Kedykvyrpakhk

NASA Astrophysics Data System (ADS)

Ivanyuk, G. Yu.; Pakhomovsky, Ya. A.; Yakovenchuk, V. N.

2015-12-01

Eudialyte-bearing interbeds within layers I-4 (Mt. Karnasurt) and II-4 (Mt. Kedykvyrpakhk) in the layered complex of the Lovozero Pluton are localized symmetrically relative to the loparite-bearing ijolite-malignite layer; the content of eudialyte decreases from underlying nepheline syenite to overlying foidolite. Eudialyte-group minerals fill the interstices between nepheline, sodalite, and microcline-perthite crystals in all rock types and are partially replaced with georgechaoite and minerals of the lovozerite group as a result of hydrothermal alteration. Variations in the chemical composition of the eudialyte-group minerals are mainly controlled by block substitution NaFeZrCl ↔ LnMn(Nb,Ti)S producing eudialyte proper, manganoeudialyte (sharply predominant), kentbrooksite, alluaivite, and a phase intermediate between manganoeudialyte and alluaivite. As the total Ln2O3 content increases, the relative amounts of Ce and La oxides increases linearly in the proportion Ce2O3: La2O3 = 2.5: 1. In the phases containing lower than 3 wt % La2O3, Nd becomes the next REE after Ce. It is very likely that (mangano)eudialyte was mostly formed after parakeldyshite and other anhydrous zirconium-silicate under effect of residual fluids enriched in Ca and Mn, which took part in fenitization of basalt, tuff, and tuffite of the Lovozero Formation.

High-throughput investigation of endothelial-to-mesenchymal transformation (EndMT) with combinatorial cellular microarrays.

PubMed

Wang, Zongjie; Calpe, Blaise; Zerdani, Jalil; Lee, Youngsang; Oh, Jonghyun; Bae, Hojae; Khademhosseini, Ali; Kim, Keekyoung

2016-07-01

In the developing heart, a specific subset of endocardium undergoes an endothelial-to-mesenchymal transformation (EndMT) thus forming nascent valve leaflets. Extracellular matrix (ECM) proteins and growth factors (GFs) play important roles in regulating EndMT but the combinatorial effect of GFs with ECM proteins is less well understood. Here we use microscale engineering techniques to create single, binary, and tertiary component microenvironments to investigate the combinatorial effects of ECM proteins and GFs on the attachment and transformation of adult ovine mitral valve endothelial cells to a mesenchymal phenotype. With the combinatorial microenvironment microarrays, we utilized 60 different combinations of ECM proteins (Fibronectin, Collagen I, II, IV, Laminin) and GFs (TGF-β1, bFGF, VEGF) and were able to identify new microenvironmental conditions capable of modulating EndMT in MVECs. Experimental results indicated that TGF-β1 significantly upregulated the EndMT while either bFGF or VEGF downregulated EndMT process markedly. Also, ECM proteins could influence both the attachment of MVECs and the response of MVECs to GFs. In terms of attachment, fibronectin is significantly better for the adhesion of MVECs among the five tested proteins. Overall collagen IV and fibronectin appeared to play important roles in promoting EndMT process. Great consistency between macroscale and microarrayed experiments and present studies demonstrates that high-throughput cellular microarrays are a promising approach to study the regulation of EndMT in valvular endothelium. Biotechnol. Bioeng. 2016;113: 1403-1412. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

mtDNA-Server: next-generation sequencing data analysis of human mitochondrial DNA in the cloud.

PubMed

Weissensteiner, Hansi; Forer, Lukas; Fuchsberger, Christian; Schöpf, Bernd; Kloss-Brandstätter, Anita; Specht, Günther; Kronenberg, Florian; Schönherr, Sebastian

2016-07-08

Next generation sequencing (NGS) allows investigating mitochondrial DNA (mtDNA) characteristics such as heteroplasmy (i.e. intra-individual sequence variation) to a higher level of detail. While several pipelines for analyzing heteroplasmies exist, issues in usability, accuracy of results and interpreting final data limit their usage. Here we present mtDNA-Server, a scalable web server for the analysis of mtDNA studies of any size with a special focus on usability as well as reliable identification and quantification of heteroplasmic variants. The mtDNA-Server workflow includes parallel read alignment, heteroplasmy detection, artefact or contamination identification, variant annotation as well as several quality control metrics, often neglected in current mtDNA NGS studies. All computational steps are parallelized with Hadoop MapReduce and executed graphically with Cloudgene. We validated the underlying heteroplasmy and contamination detection model by generating four artificial sample mix-ups on two different NGS devices. Our evaluation data shows that mtDNA-Server detects heteroplasmies and artificial recombinations down to the 1% level with perfect specificity and outperforms existing approaches regarding sensitivity. mtDNA-Server is currently able to analyze the 1000G Phase 3 data (n = 2,504) in less than 5 h and is freely accessible at https://mtdna-server.uibk.ac.at. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

[Application of mtDNA polymorphism in species identification of sarcosaphagous insects].

PubMed

Li, Xiang; Cai, Ji-feng

2011-04-01

Species identification of sarcosaphagous insects is one of the important steps in forensic research based on the knowledge of entomology. Recent studies reveal that the application of molecular biology, especially the mtDNA sequences analysis, works well in the species identification of sarcosaphagous insects. The molecular biology characteristics, structures, polymorphism of mtDNA of sarcosaphagous insects, and the recent studies in species identification of sarcosaphagous insects are reviewed in this article.

Recombination-dependent mtDNA partitioning: in vivo role of Mhr1p to promote pairing of homologous DNA.

PubMed

Ling, Feng; Shibata, Takehiko

2002-09-02

Yeast mhr1-1 was isolated as a defective mutation in mitochondrial DNA (mtDNA) recombination. About half of mhr1-1 cells lose mtDNA during growth at a higher temperature. Here, we show that mhr1-1 exhibits a defect in the partitioning of nascent mtDNA into buds and is a base-substitution mutation in MHR1 encoding a mitochondrial matrix protein. We found that the Mhr1 protein (Mhr1p) has activity to pair single-stranded DNA and homologous double-stranded DNA to form heteroduplex joints in vitro, and that mhr1-1 causes the loss of this activity, indicating its role in homologous mtDNA recombination. While the majority of the mtDNA in the mother cells consists of head-to-tail concatemers, more than half of the mtDNA in the buds exists as genome-sized monomers. The mhr1-1 deltacce1 double mutant cells do not maintain any mtDNA, indicating the strict dependence of mtDNA maintenance on recombination functions. These results suggest a mechanism for mtDNA inheritance similar to that operating in the replication and packaging of phage DNA.

77 FR 52217 - Amendment of Class D and Class E Airspace; Bozeman, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-29

... Bozeman Yellowstone International Airport. This improves the safety and management of Instrument Flight... Class E airspace at Bozeman Yellowstone International Airport, Bozeman, MT. This action aligns two Class... airspace designated as an extension to Class D, at Bozeman Yellowstone International Airport, Bozeman, MT...

ASTER Images Mt. Usu Volcano

NASA Image and Video Library

2000-04-26

On April 3, the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra Satellite captured this image of the erupting Mt. Usu volcano in Hokkaido, Japan. With its 14 spectral bands from the visible to the thermal infrared wavelength region, and its high spatial resolution of 15 to 90 meters (about 50 to 300 feet), ASTER will image the Earth for the next 6 years to map and monitor the changing surface of our planet. This false color infrared image of Mt Usu volcano is dominated by Lake Toya, an ancient volcanic caldera. On the south shore is the active Usu volcano. On Friday, March 31, more than 11,000 people were evacuated by helicopter, truck and boat from the foot of Usu, that began erupting from the northwest flank, shooting debris and plumes of smoke streaked with blue lightning thousands of feet in the air. Although no lava gushed from the mountain, rocks and ash continued to fall after the eruption. The region was shaken by thousands of tremors before the eruption. People said they could taste grit from the ash that was spewed as high as 2,700 meters (8,850 ft) into the sky and fell to coat surrounding towns with ash. "Mount Usu has had seven significant eruptions that we know of, and at no time has it ended quickly with only a small scale eruption," said Yoshio Katsui, a professor at Hokkaido University. This was the seventh major eruption of Mount Usu in the past 300 years. Fifty people died when the volcano erupted in 1822, its worst known eruption. In the image, most of the land is covered by snow. Vegetation, appearing red in the false color composite, can be seen in the agricultural fields, and forests in the mountains. Mt. Usu is crossed by three dark streaks. These are the paths of ash deposits that rained out from eruption plumes two days earlier. The prevailing wind was from the northwest, carrying the ash away from the main city of Date. Ash deposited can be traced on the image as far away as 10 kilometers (16 miles

The Making of the African mtDNA Landscape

PubMed Central

Salas, Antonio; Richards, Martin; De la Fe, Tomás; Lareu, María-Victoria; Sobrino, Beatriz; Sánchez-Diz, Paula; Macaulay, Vincent; Carracedo, Ángel

2002-01-01

Africa presents the most complex genetic picture of any continent, with a time depth for mitochondrial DNA (mtDNA) lineages >100,000 years. The most recent widespread demographic shift within the continent was most probably the Bantu dispersals, which archaeological and linguistic evidence suggest originated in West Africa 3,000–4,000 years ago, spreading both east and south. Here, we have carried out a thorough phylogeographic analysis of mtDNA variation in a total of 2,847 samples from throughout the continent, including 307 new sequences from southeast African Bantu speakers. The results suggest that the southeast Bantu speakers have a composite origin on the maternal line of descent, with ∼44% of lineages deriving from West Africa, ∼21% from either West or Central Africa, ∼30% from East Africa, and ∼5% from southern African Khoisan-speaking groups. The ages of the major founder types of both West and East African origin are consistent with the likely timing of Bantu dispersals, with those from the west somewhat predating those from the east. Despite this composite picture, the southeastern African Bantu groups are indistinguishable from each other with respect to their mtDNA, suggesting that they either had a common origin at the point of entry into southeastern Africa or have undergone very extensive gene flow since. PMID:12395296

Alterations in mtDNA, gastric carcinogenesis and early diagnosis.

PubMed

Rodrigues-Antunes, S; Borges, B N

2018-05-26

Gastric cancer remains one of the most prevalent cancers in the world. Due to this, efforts are being made to improve the diagnosis of this neoplasm and the search for molecular markers that may be involved in its genesis. Within this perspective, the mitochondrial DNA is considered as a potential candidate, since it has several well documented changes and is readily accessible. However, numerous alterations have been reported in mtDNA, not facilitating the visualization of which alterations and molecular markers are truly involved with gastric carcinogenesis. This review presents a compilation of the main known changes relating mtDNA to gastric cancer and their clinical significance.

Shear-wave velocity structure of the Tongariro Volcanic Centre, New Zealand: Fast Rayleigh and slow Love waves indicate strong shallow anisotropy

NASA Astrophysics Data System (ADS)

Godfrey, Holly J.; Fry, Bill; Savage, Martha K.

2017-04-01

Models of the velocity structure of volcanoes can help define possible magma pathways and contribute to calculating more accurate earthquake locations, which can help with monitoring volcanic activity. However, shear-wave velocity of volcanoes is difficult to determine from traditional seismic techniques, such as local earthquake tomography (LET) or refraction/reflection surveys. Here we use the recently developed technique of noise cross correlation of continuous seismic data to investigate the subsurface shear-wave velocity structure of the Tongariro Volcanic Centre (TgVC) of New Zealand, focusing on the active Ruapehu and Tongariro Volcanoes. We observe both the fundamental and first higher-order modes of Rayleigh and Love waves within our noise dataset, made from stacks of 15 min cross-correlation functions. We manually pick group velocity dispersion curves from over 1900 correlation functions, of which we consider 1373 to be high quality. We subsequently invert a subset of the fundamental mode Rayleigh- and Love-wave dispersion curves both independently and jointly for one dimensional shear-wave velocity (Vs) profiles at Ruapehu and Tongariro Volcanoes. Vs increases very slowly at a rate of approximately 0.2 km/s per km depth beneath Ruapehu, suggesting that progressive hydrothermal alteration mitigates the effects of compaction driven velocity increases. At Tongariro, we observe larger Vs increases with depth, which we interpret as different layers within Tongariro's volcanic system above altered basement greywacke. Slow Vs, on the order of 1-2 km/s, are compatible with P-wave velocities (using a Vp/Vs ratio of 1.7) from existing velocity profiles of areas within the TgVC, and the observations of worldwide studies of shallow volcanic systems that used ambient noise cross-correlation methods. Most of the measured group velocities of fundamental mode Love-waves across the TgVC are 0.1-0.4 km/s slower than those of fundamental mode Rayleigh-waves in the

Body composition and hematological changes following ascents of Mt. Aconcagua and Mt. Everest.

PubMed

Wagner, Dale R

2010-11-01

Both Mt. Aconcagua (22,841.2 ft/6962 m) and Mt. Everest (29,035.4 ft/ 8850 m) are highly prized summits by mountaineers, yet there are no published studies comparing the physiological adaptations that occur from climbing both peaks. This case study compares the changes in body composition and hematology of a mountaineer who ascended both peaks. The male subject was 41 yr of age during the Aconcagua ascent and 43 yr of age during the Everest ascent, and had a history of ascents above 19,685 ft (6000 m). Baseline body composition measurements and blood draws were done within a few days of departure for both expeditions. Body composition was assessed by air displacement plethysmography and the blood draw consisted of a complete blood count (CBC). Post-expedition measurements were taken 10-14 d after reaching the summits. The ascent of Aconcagua resulted in a 2.0-kg drop in body mass and a reduction in body fat (15.5% to 12.1%), but blood chemistry remained within +/- 2% of baseline values. Body mass was reduced from 65.0 kg to 60.5 kg during the Everest expedition with a drop in body fat from 17.3% to 10.2%. Despite no change in RBCs there were increases in hemoglobin and mean corpuscular hemoglobin of 12.7% and 13.7%, respectively. It took the subject 12 d to reach the summit of Aconcagua, whereas it took 50 d to reach the summit of Everest. The longer duration at higher altitude for the Everest expedition resulted in more dramatic physiological changes.

Assessing the damage at Mt. Coffee

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, J.C.; Macauley, L.D.

1995-12-31

The Mt. Coffee Hydroelectric Project was damaged during the Liberian civil unrest in early 1990`s. A team of engineers performed a damage assessment of the project with the hope that funding could be obtained to reconstruct the project. The damage done to the plant had far greater impacts to the country than merely the cost to rebuild the facility.

Roles of MPBQ-MT in Promoting α/γ-Tocopherol Production and Photosynthesis under High Light in Lettuce

PubMed Central

Tang, Yueli; Fu, Xueqing; Shen, Qian; Tang, Kexuan

2016-01-01

2-methyl-6-phytyl-1, 4-benzoquinol methyltransferase (MPBQ-MT) is a vital enzyme catalyzing a key methylation step in both α/γ-tocopherol and plastoquinone biosynthetic pathway. In this study, the gene encoding MPBQ-MT was isolated from lettuce (Lactuca sativa) by rapid amplification of cDNA ends (RACE), named LsMT. Overexpression of LsMT in lettuce brought about a significant increase of α- and γ-tocopherol contents with a reduction of phylloquinone (vitamin K1) content, suggesting a competition for a common substrate phytyl diphosphate (PDP) between the two biosynthetic pathways. Besides, overexpression of LsMT significantly increased plastoquinone (PQ) level. The increase of tocopherol and plastoquinone levels by LsMT overexpression conduced to the improvement of plants’ tolerance and photosynthesis under high light stress, by directing excessive light energy toward photosynthetic production rather than toward generation of more photooxidative damage. These findings suggest that the role and function of MPBQ-MT can be further explored for enhancing vitamin E value, strengthening photosynthesis and phototolerance under high light in plants. PMID:26867015

Nonsynonymous Polymorphisms in the Human AS3MT Arsenic Methylation Gene: Implications for Arsenic Toxicity

PubMed Central

2017-01-01

Arsenic methylation, the primary biotransformation in the human body, is catalyzed by the enzyme As(III) S-adenosylmethionine (SAM) methyltransferases (hAS3MT). This process is thought to be protective from acute high-level arsenic exposure. However, with long-term low-level exposure, hAS3MT produces intracellular methylarsenite (MAs(III)) and dimethylarsenite (DMAs(III)), which are considerably more toxic than inorganic As(III) and may contribute to arsenic-related diseases. Several single nucleotide polymorphisms (SNPs) in putative regulatory elements of the hAS3MT gene have been shown to be protective. In contrast, three previously identified exonic SNPs (R173W, M287T, and T306I) may be deleterious. The goal of this study was to examine the effect of single amino acid substitutions in hAS3MT on the activity of the enzyme that might explain their contributions to adverse health effects of environmental arsenic. We identified five additional intragenic variants in hAS3MT (H51R, C61W, I136T, W203C, and R251H). We purified the eight polymorphic hAS3MT proteins and characterized their enzymatic properties. Each enzyme had low methylation activity through decreased affinity for substrate, lower overall rates of catalysis, or lower stability. We propose that amino acid substitutions in hAS3MT with decreased catalytic activity lead to detrimental responses to environmental arsenic and may increase the risk of arsenic-related diseases. PMID:28537708

Evidence for recombination of mtDNA in the marine mussel Mytilus trossulus from the Baltic.

PubMed

Burzyński, Artur; Zbawicka, Małgorzata; Skibinski, David O F; Wenne, Roman

2003-03-01

A number of studies have claimed that recombination occurs in animal mtDNA, although this evidence is controversial. Ladoukakis and Zouros (2001) provided strong evidence for mtDNA recombination in the COIII gene in gonadal tissue in the marine mussel Mytilus galloprovincialis from the Black Sea. The recombinant molecules they reported had not however become established in the population from which experimental animals were sampled. In the present study, we provide further evidence of the generality of mtDNA recombination in Mytilus by reporting recombinant mtDNA molecules in a related mussel species, Mytilus trossulus, from the Baltic. The mtDNA region studied begins in the 16S rRNA gene and terminates in the cytochrome b gene and includes a major noncoding region that may be analogous to the D-loop region observed in other animals. Many bivalve species, including some Mytilus species, are unusual in that they have two mtDNA genomes, one of which is inherited maternally (F genome) the other inherited paternally (M genome). Two recombinant variants reported in the present study have population frequencies of 5% and 36% and appear to be mosaic for F-like and M-like sequences. However, both variants have the noncoding region from the M genome, and both are transmitted to sperm like the M genome. We speculate that acquisition of the noncoding region by the recombinant molecules has conferred a paternal role on mtDNA genomes that otherwise resemble the F genome in sequence.

Different degree of paternal mtDNA leakage between male and female progeny in interspecific Drosophila crosses

PubMed Central

Dokianakis, Emmanouil; Ladoukakis, Emmanuel D

2014-01-01

Maternal transmission of mitochondrial DNA (mtDNA) in animals is thought to prevent the spread of selfish deleterious mtDNA mutations in the population. Various mechanisms have been evolved independently to prevent the entry of sperm mitochondria in the embryo. However, the increasing number of instances of paternal mtDNA leakage suggests that these mechanisms are not very effective. The destruction of sperm mitochondria in mammalian embryos is mediated by nuclear factors. Also, the destruction of paternal mitochondria in intraspecific crosses is more effective than in interspecific ones. These observations have led to the hypothesis that leakage of paternal mtDNA (and consequently mtDNA recombination owing to ensuing heteroplasmy) might be more common in inter- than in intraspecific crosses and that it should increase with phylogenetic distance of hybridizing species. We checked paternal leakage in inter- and intraspecific crosses in Drosophila and found little evidence for this hypothesis. In addition, we have observed a higher level of leakage among male than among female progeny from the same cross. This is the first report of sex-specific leakage of paternal mtDNA. It suggests that paternal mtDNA leakage might not be a stochastic result of an error-prone mechanism, but rather, it may be under complex genetic control. PMID:25077015

Different degree of paternal mtDNA leakage between male and female progeny in interspecific Drosophila crosses.

PubMed

Dokianakis, Emmanouil; Ladoukakis, Emmanuel D

2014-07-01

Maternal transmission of mitochondrial DNA (mtDNA) in animals is thought to prevent the spread of selfish deleterious mtDNA mutations in the population. Various mechanisms have been evolved independently to prevent the entry of sperm mitochondria in the embryo. However, the increasing number of instances of paternal mtDNA leakage suggests that these mechanisms are not very effective. The destruction of sperm mitochondria in mammalian embryos is mediated by nuclear factors. Also, the destruction of paternal mitochondria in intraspecific crosses is more effective than in interspecific ones. These observations have led to the hypothesis that leakage of paternal mtDNA (and consequently mtDNA recombination owing to ensuing heteroplasmy) might be more common in inter- than in intraspecific crosses and that it should increase with phylogenetic distance of hybridizing species. We checked paternal leakage in inter- and intraspecific crosses in Drosophila and found little evidence for this hypothesis. In addition, we have observed a higher level of leakage among male than among female progeny from the same cross. This is the first report of sex-specific leakage of paternal mtDNA. It suggests that paternal mtDNA leakage might not be a stochastic result of an error-prone mechanism, but rather, it may be under complex genetic control.

Geophysical model of Mt. Labo geothermal field, Southeastern Luzon, Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Los Banos, C.F. Jr.; Layugan, D.B.; Maneja, F.C.

1996-12-31

The geophysical model of Mt. Labo geothermal field, based on the results of the regional gravity and magnetotelluric (MT) surveys, indicates a geothermal reservoir centered beneath the Mabahong Labo thermal ground. The heat source of the present hydrothermal system is provided by a cooling intrusive body, mapped as a gravity high, associated with the Mt. Labo volcanic activity. The geothermal fluids circulate along fractures within the low-density reservoir rocks of the Susung Dalaga Formation. This reservoir rock shows relatively high resistivity values of 30 to 40 ohm-m. Directly overlying the resistive reservoir, occurring between -1000 m to -1500 m, ismore » a thick alteration halo formed within the basal unit of the Labo Volcanics (Lbu). The predominantly hydrous, low-temperature clay minerals which compose the alteration halo give low resistivity values of 1 to 4 ohm-m. Outflow of hot fluids to the south-southwest, which possibly feeds the thermal springs at Kilbay and Alawihaw, may be channeled along the thinning low resistivity Lbu. The geophysical model also shows a possible separate hydrothermal system in the west associated with a relatively shallower intrusive body, also defined by positive gravity values. This intrusion, which could be related to the cluster of volcanic domes located south of Bakilid Fault, may provide the heat that drives the hot springs at Kilbay and Alawihaw. It could also be possible that the Kilbay and Alawihaw springs originate from both systems. Based on the interpretation of the gravity and MT data, wells LB-1D and LB-5D lie closest to the intrusive, LB-313 and LB-4D are located in the center of the resource, while LB-2D and LB-6D lie along the margin or outside of the resource. The size of this resource, as defined by the 5 ohm-m MT low resistivity anomaly, is about 10 sq. km.« less

Contrast Responsivity in MT+ Correlates with Phonological Awareness and Reading Measures in Children

PubMed Central

Ben-Shachar, Michal; Dougherty, Robert F.; Deutsch, Gayle K.; Wandell, Brian A.

2007-01-01

There are several independent sets of findings concerning the neural basis of reading. One set demonstrates a powerful relationship between phonological processing and reading skills. Another set reveals a relationship between visual responses in the motion pathways and reading skills. It is widely assumed that these two findings are unrelated. We tested the hypothesis that phonological awareness is related to motion responsivity in children’s MT+. We measured BOLD signals to drifting gratings as a function of contrast. Subjects were 35 children ages 7–12y with a wide range of reading skills. Contrast responsivity in MT+, but not V1, was correlated with phonological awareness and to a lesser extent with two other measures of reading. No correlation was found between MT+ signals and rapid naming, age or general IQ measures. These results establish an important link between visual and phonological processing in children and suggest that MT+ responsivity is a marker for healthy reading development. PMID:17689981

Mt. St. Helens

NASA Technical Reports Server (NTRS)

2001-01-01

[figure removed for brevity, see original site] [figure removed for brevity, see original site] Figure 1 Movie

This 3-D anaglyph image of Mt. St. Helens volcano combines the nadir-looking and back-looking band 3 images of ASTER. To view the image in stereo, you will need blue-red glasses. Make sure to look through the red lens with your left eye. Figure 1: This ASTER image of Mt. St. Helens volcano in Washington was acquired on August 8, 2000 and covers an area of 37 by 51 km. Mount Saint Helens, a volcano in the Cascade Range of southwestern Washington that had been dormant since 1857, began to show signs of renewed activity in early 1980. On 18 May 1980, it erupted with such violence that the top of the mountain was blown off, spewing a cloud of ash and gases that rose to an altitude of 19 kilometers. The blast killed about 60 people and destroyed all life in an area of some 180 square kilometers (some 70 square miles), while a much larger area was covered with ash and debris. It continues to spit forth ash and steam intermittently. As a result of the eruption, the mountain's elevation decreased from 2,950 meters to 2,549 meters. The image is centered at 46.2 degrees north latitude, 122.2 degrees west longitude.

Movie: The simulated fly-over was produced by draping ASTER visible and near infrared image data over a digital topography model, created from ASTER's 3-D stereo bands. The color was computer enhanced to create a natural color image, where the vegetation appears green. The topography has been exaggerated 2 times to enhance the appearance of the relief.

The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula

PubMed Central

Verdier, Jerome; Zhao, Jian; Torres-Jerez, Ivone; Ge, Shujun; Liu, Chenggang; He, Xianzhi; Mysore, Kirankumar S.; Dixon, Richard A.; Udvardi, Michael K.

2012-01-01

MtPAR (Medicago truncatula proanthocyanidin regulator) is an MYB family transcription factor that functions as a key regulator of proanthocyanidin (PA) biosynthesis in the model legume Medicago truncatula. MtPAR expression is confined to the seed coat, the site of PA accumulation. Loss-of-function par mutants contained substantially less PA in the seed coat than the wild type, whereas levels of anthocyanin and other specialized metabolites were normal in the mutants. In contrast, massive accumulation of PAs occurred when MtPAR was expressed ectopically in transformed hairy roots of Medicago. Transcriptome analysis of par mutants and MtPAR-expressing hairy roots, coupled with yeast one-hybrid analysis, revealed that MtPAR positively regulates genes encoding enzymes of the flavonoid–PA pathway via a probable activation of WD40-1. Expression of MtPAR in the forage legume alfalfa (Medicago sativa) resulted in detectable levels of PA in shoots, highlighting the potential of this gene for biotechnological strategies to increase PAs in forage legumes for reduction of pasture bloat in ruminant animals. PMID:22307644

DNA Barcoding the Medusozoa using mtCOI

NASA Astrophysics Data System (ADS)

Ortman, Brian D.; Bucklin, Ann; Pagès, Francesc; Youngbluth, Marsh

2010-12-01

The Medusozoa are a clade within the Cnidaria comprising the classes Hydrozoa, Scyphozoa, and Cubozoa. Identification of medusozoan species is challenging, even for taxonomic experts, due to their fragile forms and complex, morphologically-distinct life history stages. In this study 231 sequences for a portion of the mitochondrial Cytochrome Oxidase I (mtCOI) gene were obtained from 95 species of Medusozoans including; 84 hydrozoans (61 siphonophores, eight anthomedusae, four leptomedusae, seven trachymedusae, and four narcomedusae), 10 scyphozoans (three coronatae, four semaeostomae, two rhizostomae, and one stauromedusae), and one cubozoan. This region of mtCOI has been used as a DNA barcode (i.e., a molecular character for species recognition and discrimination) for a diverse array of taxa, including some Cnidaria. Kimura 2-parameter (K2P) genetic distances between sequence variants within species ranged from 0 to 0.057 (mean 0.013). Within the 13 genera for which multiple species were available, K2P distance between congeneric species ranged from 0.056 to 0.381. A cluster diagram generated by Neighbor Joining (NJ) using K2P distances reliably clustered all barcodes of the same species with ≥99% bootstrap support, ensuring accurate identification of species. Intra- and inter-specific variation of the mtCOI gene for the Medusozoa are appropriate for this gene to be used as a DNA barcode for species-level identification, but not for phylogenetic analysis or taxonomic classification of unknown sequences at higher taxonomic levels. This study provides a set of molecular tools that can be used to address questions of speciation, biodiversity, life-history, and population boundaries in the Medusozoa.

Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS

USGS Publications Warehouse

Morway, Eric D.; Niswonger, Richard G.; Langevin, Christian D.; Bailey, Ryan T.; Healy, Richard W.

2013-01-01

The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship.

Whole brain inhomogeneous magnetization transfer (ihMT) imaging: Sensitivity enhancement within a steady-state gradient echo sequence.

PubMed

Mchinda, Samira; Varma, Gopal; Prevost, Valentin H; Le Troter, Arnaud; Rapacchi, Stanislas; Guye, Maxime; Pelletier, Jean; Ranjeva, Jean-Philippe; Alsop, David C; Duhamel, Guillaume; Girard, Olivier M

2018-05-01

To implement, characterize, and optimize an interleaved inhomogeneous magnetization transfer (ihMT) gradient echo sequence allowing for whole-brain imaging within a clinically compatible scan time. A general framework for ihMT modelling was developed based on the Provotorov theory of radiofrequency saturation, which accounts for the dipolar order underpinning the ihMT effect. Experimental studies and numerical simulations were performed to characterize and optimize the ihMT-gradient echo dependency with sequence timings, saturation power, and offset frequency. The protocol was optimized in terms of maximum signal intensity and the reproducibility assessed for a nominal resolution of 1.5 mm isotropic. All experiments were performed on healthy volunteers at 1.5T. An important mechanism driving signal optimization and leading to strong ihMT signal enhancement that relies on the dynamics of radiofrequency energy deposition has been identified. By taking advantage of the delay allowed for readout between ihMT pulse bursts, it was possible to boost the ihMT signal by almost 2-fold compared to previous implementation. Reproducibility of the optimal protocol was very good, with an intra-individual error < 2%. The proposed sensitivity-boosted and time-efficient steady-state ihMT-gradient echo sequence, implemented and optimized at 1.5T, allowed robust high-resolution 3D ihMT imaging of the whole brain within a clinically compatible scan time. Magn Reson Med 79:2607-2619, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

MT71x: Multi-Temperature Library Based on ENDF/B-VII.1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conlin, Jeremy Lloyd; Parsons, Donald Kent; Gray, Mark Girard

The Nuclear Data Team has released a multitemperature transport library, MT71x, based upon ENDF/B-VII.1 with a few modifications as well as additional evaluations for a total of 427 isotope tables. The library was processed using NJOY2012.39 into 23 temperatures. MT71x consists of two sub-libraries; MT71xMG for multigroup energy representation data and MT71xCE for continuous energy representation data. These sub-libraries are suitable for deterministic transport and Monte Carlo transport applications, respectively. The SZAs used are the same for the two sub-libraries; that is, the same SZA can be used for both libraries. This makes comparisons between the two libraries and betweenmore » deterministic and Monte Carlo codes straightforward. Both the multigroup energy and continuous energy libraries were verified and validated with our checking codes checkmg and checkace (multigroup and continuous energy, respectively) Then an expanded suite of tests was used for additional verification and, finally, verified using an extensive suite of critical benchmark models. We feel that this library is suitable for all calculations and is particularly useful for calculations sensitive to temperature effects.« less

Biochemical signatures mimicking multiple carboxylase deficiency in children with mutations in MT-ATP6.

PubMed

Larson, Austin A; Balasubramaniam, Shanti; Christodoulou, John; Burrage, Lindsay C; Marom, Ronit; Graham, Brett H; Diaz, George A; Glamuzina, Emma; Hauser, Natalie; Heese, Bryce; Horvath, Gabriella; Mattman, Andre; van Karnebeek, Clara; Lane Rutledge, S; Williamson, Amy; Estrella, Lissette; Van Hove, Johan K L; Weisfeld-Adams, James D

2018-01-04

Elevations of specific acylcarnitines in blood reflect carboxylase deficiencies, and have utility in newborn screening for life-threatening organic acidemias and other inherited metabolic diseases. In this report, we describe a newly-identified association of biochemical features of multiple carboxylase deficiency in individuals harboring mitochondrial DNA (mtDNA) mutations in MT-ATP6 and in whom organic acidemias and multiple carboxylase deficiencies were excluded. Using retrospective chart review, we identified eleven individuals with abnormally elevated propionylcarnitine (C3) or hydroxyisovalerylcarnitine (C5OH) with mutations in MT-ATP6, most commonly m.8993T>G in high heteroplasmy or homoplasmy. Most patients were ascertained on newborn screening; most had normal enzymatic or molecular genetic testing to exclude biotinidase and holocarboxylase synthetase deficiencies. MT-ATP6 is associated with some cases of Leigh disease; clinical outcomes in our cohort ranged from death from neurodegenerative disease in early childhood to clinically and developmentally normal after several years of follow-up. These cases expand the biochemical phenotype associated with MT-ATP6 mutations, especially m.8993T>G, to include acylcarnitine abnormalities mimicking carboxylase deficiency states. Clinicians should be aware of this association and its implications for newborn screening, and consider mtDNA sequencing in patients exhibiting similar acylcarnitine abnormalities that are biotin-unresponsive and in whom other enzymatic deficiencies have been excluded. Copyright © 2018 Elsevier B.V. and Mitochondria Research Society. All rights reserved.

TOP1MT deficiency promotes GC invasion and migration via the enhancements of LDHA expression and aerobic glycolysis.

PubMed

Wang, Hongqiang; Zhou, Rui; Sun, Li; Xia, Jianling; Yang, Xuchun; Pan, Changqie; Huang, Na; Shi, Min; Bin, Jianping; Liao, Yulin; Liao, Wangjun

2017-11-01

Aerobic glycolysis plays an important role in cancer progression. New target genes regulating cancer aerobic glycolysis must be explored to improve patient prognosis. Mitochondrial topoisomerase I ( TOP1MT ) deficiency suppresses glucose oxidative metabolism but enhances glycolysis in normal cells. Here, we examined the role of TOP1MT in gastric cancer (GC) and attempted to determine the underlying mechanism. Using in vitro and in vivo experiments and analyzing the clinicopathological characteristics of patients with GC, we found that TOP1MT expression was lower in GC samples than in adjacent nonmalignant tissues. TOP1MT knockdown significantly promoted GC migration and invasion in vitro and in vivo Importantly, TOP1MT silencing increased glucose consumption, lactate production, glucose transporter 1 expression and the epithelial-mesenchymal transition (EMT) in GC. Additionally, regulation of glucose metabolism induced by TOP1MT was significantly associated with lactate dehydrogenase A (LDHA) expression. A retrospective analysis of clinical data from 295 patients with GC demonstrated that low TOP1MT expression was associated with lymph node metastasis, recurrence and high mortality rates. TOP1MT deficiency enhanced glucose aerobic glycolysis by stimulating LDHA to promote GC progression. © 2017 The authors.

In vitro and in vivo activity of MT201, a fully human monoclonal antibody for pancarcinoma treatment.

PubMed

Naundorf, Stefanie; Preithner, Susanne; Mayer, Petra; Lippold, Sandra; Wolf, Andreas; Hanakam, Frank; Fichtner, Iduna; Kufer, Peter; Raum, Tobias; Riethmüller, Gert; Baeuerle, Patrick A; Dreier, Torsten

2002-07-01

In our study, a novel, fully human, recombinant monoclonal antibody of the IgG1 isotype, called MT201, was characterized for its binding properties, complement-dependent (CDC) and antibody-dependent cellular cytotoxicity (ADCC), as well as for its in vivo antitumor activity in a nude mouse model. MT201 was found to bind its target, the epithelial cell adhesion molecule (Ep-CAM; also called 17-1A antigen, KSA, EGP-2, GA733-2), with low affinity in a range similar to that of the clinically validated, murine monoclonal IgG2a antibody edrecolomab (Panorex(R)). MT201 exhibited Ep-CAM-specific CDC with a potency similar to that of edrecolomab. However, the efficacy of ADCC of MT201, as mediated by human immune effector cells, was by 2 orders of magnitude higher than that of edrecolomab. Addition of human serum reduced the ADCC of MT201 while it essentially abolished ADCC of edrecolomab within the concentration range tested. In a nude mouse xenograft model, growth of tumors derived from the human colon carcinoma line HT-29 was significantly and comparably suppressed by MT201 and edrecolomab. The fully human nature and the improved ADCC of MT201 with human effector cells will make MT201 a promising candidate for the clinical development of a novel pan-carcinoma antibody that is superior to edrecolomab. Copyright 2002 Wiley-Liss, Inc.

Comparison of minichromosome maintenance proteins (MCM-3, MCM-7) and metallothioneins (MT-I/II, MT-III) expression in relation to clinicopathological data in ovarian cancer.

PubMed

Kobierzycki, Christopher; Pula, Bartosz; Skiba, Mateusz; Jablonska, Karolina; Latkowski, Krzysztof; Zabel, Maciej; Nowak-Markwitz, Ewa; Spaczynski, Marek; Kedzia, Witold; Podhorska-Okolow, Marzena; Dziegiel, Piotr

2013-12-01

Despite great progress in the understanding of ovarian cancer biology, clinicopathological data (i.e. grade, stage, histological type and residual disease after surgery) seem to be the most important prognostic factors. The present study aimed to investigate the relationship between expression of minichromosome maintenance proteins (MCM-3, MCM-7), metallothioneins (MT-I/II, MT-III), and Ki-67 in 103 ovarian cancer cases, mostly of the serous histological type. Statistical analysis revealed strong positive correlations in the expression of MCM-3 vs. Ki-67 (r=0.492), MCM-7 vs. Ki-67 (r=0.651), and MCM-3 vs. MCM-7 (r=0.515) (all p<0.0001). The Kruskal-Wallis test showed an association of increased expression of MCM-3 and Ki-67 with increasing grade of histological malignancy (p=0.0011, p=0.029, respectively). Regarding clinical progression, cytoplasmic MT-I/II expression was significantly higher in more advanced disease stages (III+IV vs. I+II; p=0.0247). Due to the correlations shown here, the determination of MCM proteins as proliferation markers of ovarian cancer, should be strongly considered.

Decrease of 3243 A→G mtDNA Mutation from Blood in MELAS Syndrome: A Longitudinal Study

PubMed Central

Rahman, S.; Poulton, J.; Marchington, D.; Suomalainen, A.

2001-01-01

It is widely held that changes in the distribution of mutant mtDNAs underlie the progressive nature of mtDNA diseases, but there are few data documenting such changes. We compared the levels of 3243 A→G mutant mtDNA in blood at birth from Guthrie cards and at the time of diagnosis in a blood DNA sample from patients with mitochondrial encephalopathy, lactic acidosis, and strokelike episodes (MELAS) syndrome. Paired blood DNA samples separated by 9–19 years were obtained from six patients with MELAS. Quantification of mutant load, by means of a solid-phase minisequencing technique, demonstrated a decline (range 12%–29%) in the proportion of mutant mtDNA in all cases (P=.0015, paired t-test). These results suggest that mutant mtDNA is slowly selected from rapidly dividing blood cells in MELAS. PMID:11085913

MtDNA and Y-chromosome variation in Kurdish groups.

PubMed

Nasidze, Ivan; Quinque, Dominique; Ozturk, Murat; Bendukidze, Nina; Stoneking, Mark

2005-07-01

In order to investigate the origins and relationships of Kurdish-speaking groups, mtDNA HV1 sequences, eleven Y chromosome bi-allelic markers, and 9 Y-STR loci were analyzed among three Kurdish groups: Zazaki and Kurmanji speakers from Turkey, and Kurmanji speakers from Georgia. When compared with published data from other Kurdish groups and from European, Caucasian, and West and Central Asian groups, Kurdish groups are most similar genetically to other West Asian groups, and most distant from Central Asian groups, for both mtDNA and the Y-chromosome. However, Kurdish groups show a closer relationship with European groups than with Caucasian groups based on mtDNA, but the opposite based on the Y-chromosome, indicating some differences in their maternal and paternal histories. The genetic data indicate that the Georgian Kurdish group experienced a bottleneck effect during their migration to the Caucasus, and that they have not had detectable admixture with their geographic neighbours in Georgia. Our results also do not support the hypothesis of the origin of the Zazaki-speaking group being in northern Iran; genetically they are more similar to other Kurdish groups. Genetic analyses of recent events, such as the origins and migrations of Kurdish-speaking groups, can therefore lead to new insights into such migrations.

Melatonin Suppresses Neuropathic Pain via MT2-Dependent and -Independent Pathways in Dorsal Root Ganglia Neurons of Mice

PubMed Central

Lin, Jia-Ji; Lin, Ye; Zhao, Tian-Zhi; Zhang, Chun-Kui; Zhang, Ting; Chen, Xiao-Li; Ding, Jia-Qi; Chang, Ting; Zhang, Zhuo; Sun, Chao; Zhao, Dai-Di; Zhu, Jun-Lin; Li, Zhu-Yi; Li, Jin-Lian

2017-01-01

Melatonin (Mel) and its receptors (MT1 and MT2) have a well-documented efficacy in treating different pain conditions. However, the anti-nociceptive effects of Mel and Mel receptors in neuropathic pain (NP) are poorly understood. To elucidate this process, pain behaviors were measured in a dorsal root ganglia (DRG)-friendly sciatic nerve cuffing model. We detected up-regulation of MT2 expression in the DRGs of cuff-implanted mice and its activation by the agonist 8-M-PDOT (8MP). Also, Mel attenuated the mechanical and thermal allodynia induced by cuff implantation. Immunohistochemical analysis demonstrated the expression of MT2 in the DRG neurons, while MT1 was expressed in the satellite cells. In cultured primary neurons, microarray analysis and gene knockdown experiments demonstrated that MT2 activation by 8MP or Mel suppressed calcium signaling pathways via MAPK1, which were blocked by RAR-related orphan receptor alpha (RORα) activation with a high dose of Mel. Furthermore, expression of nitric oxide synthase 1 (NOS1) was down-regulated upon Mel treatment regardless of MT2 or RORα. Application of Mel or 8MP in cuff-implanted models inhibited the activation of peptidergic neurons and neuro-inflammation in the DRGs by down-regulating c-fos, calcitonin gene-related peptide [CGRP], and tumor necrosis factor-1α [TNF-1α] and interleukin-1β [IL-1β]. Addition of the MT2 antagonist luzindole blocked the effects of 8MP but not those of Mel. In conclusion, only MT2 was expressed in the DRG neurons and up-regulated upon cuff implantation. The analgesic effects of Mel in cuff-implanted mice were closely associated with both MT2-dependent (MAPK-calcium channels) and MT2-independent (NOS1) pathways in the DRG. PMID:28656058

FoxO1 regulates apoptosis induced by asbestos in the MT-2 human T-cell line.

PubMed

Matsuzaki, Hidenori; Lee, Suni; Maeda, Megumi; Kumagai-Takei, Naoko; Nishimura, Yasumitsu; Otsuki, Takemi

2016-09-01

Asbestos is known to cause malignant mesothelioma and lung cancer. Recent studies implicate tumor immunity in the development of various tumors, including malignant mesothelioma. In order to establish an in vitro T-cell model to clarify the effects of long-term exposure of asbestos on tumor immunity, in this study, human T-cell line MT-2 cells were cultured with asbestos for longer than 8 months and the resultant cells (MT-2Rst) were assessed for the expression of forkhead transcription factor FoxO1. Gene expression analysis revealed that the amount of FoxO1 mRNA decreased after long-term exposure of the MT-2 cells to asbestos. In accordance with this reduction in FoxO1, pro-apoptotic Foxo1 target genes Puma, Fas ligand and Bim were also seen to be down-regulated in MT-2Rst cells. Furthermore, shRNA-mediated knock-down of FoxO1 reduced the number of apoptotic parental MT-2 cells after treatment with asbestos. On the other hand, over-expression of FoxO1 did not affect asbestos-induced apoptosis in MT-2Rst cells. These results suggested that FoxO1 played an important role in regulating asbestos-induced apoptosis and confirmed the presence of multiple pathways regulating resistance to asbestos in MT-2Rst cells.

Efficient inhibition of heavy metal release from mine tailings against acid rain exposure by triethylenetetramine intercalated montmorillonite (TETA-Mt).

PubMed

Gong, Beini; Wu, Pingxiao; Huang, Zhujian; Li, Yuanyuan; Yang, Shanshan; Dang, Zhi; Ruan, Bo; Kang, Chunxi

2016-11-15

The potential application of triethylenetetramine intercalated montmorillonite (TETA-Mt) in mine tailings treatment and AMD (acid mine drainage) remediation was investigated with batch experiments. The structural and morphological characteristics of TETA-Mt were analyzed with XRD, FTIR, DTG-TG and SEM. The inhibition efficiencies of TETA-Mt against heavy metal release from mine tailings when exposed to acid rain leaching was examined and compared with that of triethylenetetramine (TETA) and Mt. Results showed that the overall inhibition by TETA-Mt surpassed that by TETA or Mt for various heavy metal ions over an acid rain pH range of 3-5.6 and a temperature range of 25-40°C. When mine tailings were exposed to acid rain of pH 4.8 (the average rain pH of the mining site where the mine tailings were from), TETA-Mt achieved an inhibition efficiency of over 90% for Cu(2+), Zn(2+), Cd(2+) and Mn(2+) release, and 70% for Pb(2+) at 25°C. It was shown that TETA-Mt has a strong buffering capacity. Moreover, TETA-Mt was able to adsorb heavy metal ions and the adsorption process was fast, suggesting that coordination was mainly responsible. These results showed the potential of TETA-Mt in AMD mitigation, especially in acid rain affected mining area. Copyright © 2016 Elsevier B.V. All rights reserved.

Immobilization of metallothionein to carbon paste electrode surface via anti-MT antibodies and its use for biosensing of silver.

PubMed

Trnkova, Libuse; Krizkova, Sona; Adam, Vojtech; Hubalek, Jaromir; Kizek, Rene

2011-01-15

In this paper, heavy metal biosensor based on immobilization of metallothionein (MT) to the surface of carbon paste electrode (CPE) via anti-MT-antibodies is reported. First, the evaluation of MT electroactivity was done. The attention was focused on the capturing of MT to the CPE surface. Antibodies incorporated and mixed into carbon paste were stable; even after two weeks the observed changes in signal height were lower than 5%. Further, the interaction of MT with polyclonal chicken antibodies incorporated in carbon paste electrode was determined by square-wave voltammetry. In the voltammogram, two signals--labelled as cys(MT) and W(a)--were observed. The cys(MT) corresponded to -SH moieties of MT and W(a) corresponded to tryptophan residues of chicken antibodies. Time of interaction (300 s) and MT concentration (125 μg/ml) were optimized to suggest a silver(I) ions biosensor. Biosensor (CPE modified with anti-MT antibody) prepared under the optimized conditions was then used for silver(I) ions detection. The detection limit (3 S/N) for silver(I) ions was estimated as 0.5 nM. The proposed biosensor was tested by detection spiking of silver(I) ions in various water samples (from very pure distilled water to rainwater). Recoveries varied from 74 to 104%. Copyright © 2010 Elsevier B.V. All rights reserved.

The tephrostratigraphy of Mt. Berlin volcano, Antarctica: Integrating blue ice tephra and ice core tephra records

NASA Astrophysics Data System (ADS)

Iverson, N. A.; Dunbar, N. W.; McIntosh, W. C.; Kurbatov, A.

2016-12-01

Reconstructing volcanic activity in Antarctica is difficult because of the limited outcrop exposure. However, ice is an excellent medium for sampling tephra, allowing for a more complete eruptive record than can be found in other depositional environments. Furthermore, because of low ambient temperature, glass shards trapped in ice remain unaltered and unhydrated. Mt. Berlin is an ice covered volcano in Marie Byrd Land, Antarctica, and, because of heavy glaciation, eruptive records on the volcano itself are sparse. Here, we present the integration of two different records of Mt. Berlin volcanism: the blue ice record found at Mt. Moulton (Dunbar et al., 2008) and the ice core record from the WAIS Divide ice core. Tephra from Mt. Berlin are also found in other ice and marine core records, and these have been correlated and integrated into the combined volcanic record. The Mt. Moulton blue ice area is located 30 km from Mt. Berlin and hosts a fabulous tephra record spanning the last 500 ka. A total of 36 tephra from Mt. Berlin were sampled in stratigraphic order and nine were directly dated by 40Ar/39Ar dating method. Twenty five tephra from WAIS Divide have been analyzed and are geochemically similar to Mt. Berlin with ice core ages dating back to 70 ka. The two tephra records were integrated using their respective timescales. In locations where the Mt. Moulton record does not have precise chronology, the δ18O records from Mt. Moulton (Popp, 2008) and WAIS (WAIS, 2015) were used to integrate the stratigraphy. In total 61 tephra from both ice sections provide an excellent record of the magmatic evolution of Mt. Berlin over the past 500 ka. EMP analyses on glass shards show a gradual change in Fe and S over time. Most of the other major elements remain relatively unchanged. The trend in Fe and S could be produced by progressive tapping of a single, stratified magma chamber, but the long duration of volcanism makes this unlikely. We instead favor small batches of

b-value distribution in and around Mt. Tarumae, Japan

NASA Astrophysics Data System (ADS)

Chiba, K.

2017-12-01

Mt. Tarumae is an active volcano located in southeastern Shikotsu caldera, Hokkaido, Japan. Recently, crustal expansion occurred in 1999-2000 and 2013 near the summit of Mt. Tarumae, with a M5.6 earthquake recorded west of the summit on 8 July 2014. In this study, I determined hypocenter distributions and then performed b-value analysis for the period between 1 August 2014 and 12 August 2016 to improve our understanding of the magma system geometry beneath the summit of Mt. Tarumae. Hypocenters are mainly distributed in two regions: 3 - 5 km west of Mt. Tarumae, and beneath the volcano. I then determined b-value distributions. Regions with relatively high b-values ( 1.3) are located at depths of -0.5 to 2.0 km beneath the summit and at depths greater than 6.0 km in the northwestern part at about 1.5 - 3.0 km from the summit, while a region with relatively low b-values ( 0.6) is located at depths of 2.0 - 6.0 km beneath the summit. Compared the b-value distributions with other geophysical observations, it was found that the high b-value region from -0.5 to 2.0 km depth corresponds to regions of lower resistivity, positive self-potential anomaly, and an inflation source observed in 1999-2000. It is thus inferred that this region is generated by crustal heterogeneity, a decrease in effective normal stress, and change of a frictional property due to the development of faults and fissures, and the circulation of hydrothermal fluids. On the other hand, the inflation source observed in 2013 was located near the boundary between the low b-value region beneath the summit and the deeper high b-value region in the northwestern part at about 1.5 - 3.0 km from the summit. Studies of other volcanoes suggest that such a high-b-value region likely corresponds to a magma chamber. From the deeper high b-value region estimated in this study, I am able to point out that the magma chamber is located to depths greater than 6.0 km in the northwestern part at about 1.5 - 3.0 km from the

Speed skills: measuring the visual speed analyzing properties of primate MT neurons.

PubMed

Perrone, J A; Thiele, A

2001-05-01

Knowing the direction and speed of moving objects is often critical for survival. However, it is poorly understood how cortical neurons process the speed of image movement. Here we tested MT neurons using moving sine-wave gratings of different spatial and temporal frequencies, and mapped out the neurons' spatiotemporal frequency response profiles. The maps typically had oriented ridges of peak sensitivity as expected for speed-tuned neurons. The preferred speed estimate, derived from the orientation of the maps, corresponded well to the preferred speed when moving bars were presented. Thus, our data demonstrate that MT neurons are truly sensitive to the object speed. These findings indicate that MT is not only a key structure in the analysis of direction of motion and depth perception, but also in the analysis of object speed.

Constitutional Rights: A View from Mt. Healthy.

ERIC Educational Resources Information Center

Gee, E. Gordon

In their 1977 decision, "Mt. Healthy City School District Board of Education v. Doyle," the Supreme Court held that if a government employee who had a reasonable expectation of continued employment is dismissed and can show that his dismissal was motivated by his taking actions that are constitutionally protected, the employing agency…

76 FR 59479 - Montana Disaster Number MT-00062

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-26

... SMALL BUSINESS ADMINISTRATION [Disaster Declaration 12714 and 12715] Montana Disaster Number MT-00062 AGENCY: U.S. Small Business Administration. ACTION: Amendment 2. SUMMARY: This is an amendment of... information in the original declaration remains unchanged. (Catalog of Federal Domestic Assistance Numbers...

Mt. Elgon, Africa, Shaded Relief and Colored Height

NASA Technical Reports Server (NTRS)

2004-01-01

The striking contrast of geologic structures in Africa is shown in this shaded relief image of Mt. Elgon on the left and a section of the Great Rift Valley on the right.

Mt. Elgon is a solitary extinct volcano straddling the border between Uganda and Kenya, and at 4,321 meters (14,178 feet) tall is the eighth highest mountain in Africa. It is positioned on the Pre-Cambriam bedrock of the Trans Nzoia Plateau, and is similar to other such volcanoes in East Africa in that it is associated with the formation of the Rift Valley. However one thing that sets Mt. Elgon apart is its age.

Although there is no verifiable evidence of its earliest volcanic activity, Mt. Elgon is estimated to be at least 24 million years old, making it the oldest extinct volcano in East Africa. This presents a striking comparison to Mt. Kilimanjaro, the highest mountain in Africa at 5,895 meters (19,341 feet), which is just over one million years old. Judging by the diameter of its base, it is a common belief among geological experts that Mt. Elgon was once the highest mountains in Africa, however erosion has played a significant role in reducing the height to its present value.

Juxtaposed with this impressive mountain is a section of the Great Rift Valley, a geological fault system that extends for about 4,830 kilometers (2,995 miles) from Syria to central Mozambique. Erosion has concealed some sections, but in some sections like that shown here, there are sheer cliffs several thousand feet high. The present configuration of the valley, which dates from the mid-Pleistocene epoch, results from a rifting process associated with thermal currents in the Earth's mantle.

Two visualization methods were combined to produce the image: shading and color coding of topographic height. The shade image was derived by computing topographic slope in the northwest-southeast direction, so that northwest slopes appear bright and southeast slopes appear dark. Color coding is directly

Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS.

PubMed

Morway, Eric D; Niswonger, Richard G; Langevin, Christian D; Bailey, Ryan T; Healy, Richard W

2013-03-01

The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship. Published 2012. This article is a U.S. Government work and is in the public domain in the USA.

Preliminary Marine MT Results from the Anisotropy and Physics of the Pacific Lithosphere Experiment (APPLE)

NASA Astrophysics Data System (ADS)

Heinson, G.; Key, K.; Constable, S.; White, A.

2002-12-01

We present preliminary magnetotelluric (MT) and geomagnetic depth sounding (GDS) results from the Anisotropy and Physics of the Pacific Lithosphere Experiment (APPLE). APPLE included both controlled source EM and MT components in order to provide constraints on the depth and alignment of anisotropic conductivity structure in both the crust and upper mantle. A key goal of the MT component is to provide insights into electrical conduction mechanisms in the mantle, particularly the proposal that hydrogen dissolved in olivine enhances the conduction in the a axis direction. The main survey was located on 30 Ma old lithosphere, about 1000 km west of San Diego, USA. The core location consisted of two long period MT instruments (102 - 105 s), two broadband MT instruments (101-104 s) along with four long wire electric field receivers. Around the core eight additional instruments were positioned on a 30 km radius to provide constraints on lateral heterogeneities in conductivity structure that may masquerade as mantle anisotropy. Four long period instruments were also deployed along a transect from the core to the base of the continental slope to constrain the effect of the coast on the data. These were augmented with four broadband sites in 1500 m water on the continental shelf offshore San Diego and six broadband sites in 10-350 m water offshore Torrey Pines Beach, California. Processing the MT time series yielded impedance responses that are predominantly two dimensional (2D) with large splits between the two principal MT modes (up to a factor of 10 difference in apparent resistivity), with the greatest mode split and most significant GDS response occurring at sites nearest the continental margin. This suggests that much of this first order anisotropy in the MT response is due to the juxtaposition of the conductive ocean and the resistive continental crust, and indeed a 2D inversion that includes bathymetry of the coastline as fixed structure produces a model with

Mitochondrial DNA (mtDNA) haplogroups in 1526 unrelated individuals from 11 Departments of Colombia

PubMed Central

Yunis, Juan J.; Yunis, Emilio J.

2013-01-01

The frequencies of four mitochondrial Native American DNA haplogroups were determined in 1526 unrelated individuals from 11 Departments of Colombia and compared to the frequencies previously obtained for Amerindian and Afro-Colombian populations. Amerindian mtDNA haplogroups ranged from 74% to 97%. The lowest frequencies were found in Departments on the Caribbean coast and in the Pacific region, where the frequency of Afro-Colombians is higher, while the highest mtDNA Amerindian haplogroup frequencies were found in Departments that historically have a strong Amerindian heritage. Interestingly, all four mtDNA haplogroups were found in all Departments, in contrast to the complete absence of haplogroup D and high frequencies of haplogroup A in Amerindian populations in the Caribbean region of Colombia. Our results indicate that all four Native American mtDNA haplogroups were widely distributed in Colombia at the time of the Spanish conquest. PMID:24130438

Biodegradation of 17alpha-methyltestosterone and isolation of MT-degrading bacterium from sediment of Nile tilapia masculinization pond.

PubMed

Homklin, Supreeda; Wattanodorn, Theerachit; Ong, Say Kee; Limpiyakorn, Tawan

2009-01-01

The fast growing and highly tolerant fish Nile tilapia is one of the most commonly raised fish in the aquaculture industry. To produce an all-male population, a common practice is to feed the Nile tilapia fry with 17alpha-methyltestosterone (MT)-impregnated food. Uneaten fish food with MT may accumulate in the masculinization ponds and be released into the receiving waters. Not much is known about the fate of MT in the fish farms and in the receiving streams. The objective of this study is to investigate the biodegradation of MT under aerobic condition and to isolate responsible microorganisms. Aerobic biodegradation tests were conducted with MT concentrations of 0.3, 1.0, 5.0, 7.0, and 10.0 mg/L using sediment from the masculinization pond as microbial seed. The results suggested that MT is biodegradable. Lag phase was not observed in all cases. With initial concentrations of 0.3, 1.0, 5.0, 7.0, and 10.0 mg/l, the first-order degradation rates were 0.52, 0.23, 0.17, 0.13 and 0.10 day(-1), respectively. Degradation rates were found to decrease with an increase in the initial MT concentration. Analysis of 16S rRNA gene sequences of a strain isolated from the sediment indicated that the strain was highly similar to Pimelobacter simplex strain S151 (100%) which is in the genus Nocardioidaceae. Using this strain, MT is degraded with a first-order degradation rate of 0.044 h(-1) excluding the lag phase. This is the first work reporting biodegradation of MT and isolation of MT-degrading bacterium from environment.

Novel mitochondrial gene content and gene arrangement indicate illegitimate inter-mtDNA recombination in the chigger mite, Leptotrombidium pallidum.

PubMed

Shao, Renfu; Mitani, Harumi; Barker, Stephen C; Takahashi, Mamoru; Fukunaga, Masahito

2005-06-01

To better understand the evolution of mitochondrial (mt) genomes in the Acari (mites and ticks), we sequenced the mt genome of the chigger mite, Leptotrombidium pallidum (Arthropoda: Acari: Acariformes). This genome is highly rearranged relative to that of the hypothetical ancestor of the arthropods and the other species of Acari studied. The mt genome of L. pallidum has two genes for large subunit rRNA, a pseudogene for small subunit rRNA, and four nearly identical large noncoding regions. Nineteen of the 22 tRNAs encoded by this genome apparently lack either a T-arm or a D-arm. Further, the mt genome of L. pallidum has two distantly separated sections with identical sequences but opposite orientations of transcription. This arrangement cannot be accounted for by homologous recombination or by previously known mechanisms of mt gene rearrangement. The most plausible explanation for the origin of this arrangement is illegitimate inter-mtDNA recombination, which has not been reported previously in animals. In light of the evidence from previous experiments on recombination in nuclear and mt genomes of animals, we propose a model of illegitimate inter-mtDNA recombination to account for the novel gene content and gene arrangement in the mt genome of L. pallidum.

Cumulative mtDNA damage and mutations contribute to the progressive loss of RGCs in a rat model of glaucoma

PubMed Central

Nickerson, John M.; Gao, Feng-juan; Sun, Zhongmou; Chen, Xin-ya; Zhang, Shu-jie; Gao, Feng; Chen, Jun-yi; Luo, Yi; Wang, Yan; Sun, Xing-huai

2015-01-01

Glaucoma is a chronic neurodegenerative disease characterized by the progressive loss of retinal ganglion cells (RGCs). Mitochondrial DNA (mtDNA) alterations have been documented as a key component of many neurodegenerative disorders. However, whether mtDNA alterations contribute to the progressive loss of RGCs and the mechanism whereby this phenomenon could occur are poorly understood. We investigated mtDNA alterations in RGCs using a rat model of chronic intraocular hypertension and explored the mechanisms underlying progressive RGC loss. We demonstrate that the mtDNA damage and mutations triggered by intraocular pressure (IOP) elevation are initiating, crucial events in a cascade leading to progressive RGC loss. Damage to and mutation of mtDNA, mitochondrial dysfunction, reduced levels of mtDNA repair/replication enzymes, and elevated reactive oxygen species form a positive feedback loop that produces irreversible mtDNA damage and mutation and contributes to progressive RGC loss, which occurs even after a return to normal IOP. Furthermore, we demonstrate that mtDNA damage and mutations increase the vulnerability of RGCs to elevated IOP and glutamate levels, which are among the most common glaucoma insults. This study suggests that therapeutic approaches that target mtDNA maintenance and repair and that promote energy production may prevent the progressive death of RGCs. PMID:25478814

Homopolymeric tract heteroplasmy in mtDNA from tissues and single oocytes: support for a genetic bottleneck.

PubMed Central

Marchington, D R; Hartshorne, G M; Barlow, D; Poulton, J

1997-01-01

While mtDNA polymorphisms at single base positions are common, the overwhelming majority of the mitochondrial genomes within a single individual are usually identical. When there is a point-mutation difference between a mother and her offspring, there may be a complete switching of mtDNA type within a single generation. It is generally assumed that there is a genetic bottleneck whereby a single or small number of founder mtDNA(s) populate the organism, but it is not known at which stages the restriction/amplification of mtDNA subtype(s) occur, and this uncertainty impedes antenatal diagnosis for mtDNA disorders. Length polymorphisms in homopolymeric tracts have been demonstrated in the large noncoding region of mtDNA. We have developed a new method, T-PCR (trimmed PCR), to quantitate heteroplasmy for two of these tracts (D310 and D16189). D310 variation is sufficient to indicate clonal origins of tissues and single oocytes. Tissues from normal individuals often possessed more than one length variant (heteroplasmy). However, there was no difference in the pattern of the length variants between somatic tissues in any control individual when bulk samples were taken. Oocytes from normal women undergoing in vitro fertilization were frequently heteroplasmic for length variants, and in two cases the modal length of the D310 tract differed in individual oocytes from the same woman. These data suggest that a restriction/amplification event, which we attribute to clonal expansion of founder mtDNA(s), has occurred by the time oocytes are mature, although further segregation may occur at a later stage. In contrast to controls, the length distribution of the D310 tract varied between tissues in a patient with heteroplasmic mtDNA rearrangements, suggesting that these mutants influence segregation. These findings have important implications for the genetic counselling of patients with pathogenic mtDNA mutations. Images Figure 2 Figure 1 Figure 3 Figure 4 Figure 5 PMID:9012414

Mt. Vesuvius, Italy

NASA Image and Video Library

2001-10-22

This ASTER image of Mt. Vesuvius Italy was acquired September 26, 2000, and covers an area of 36 by 45 km. Vesuvius overlooks the city of Naples and the Bay of Naples in central Italy. In 79 AD, Vesuvius erupted cataclysmically, burying all of the surrounding cites with up to 30 m of ash. The towns of Pompeii and Herculanaeum were rediscovered in the 18th century, and excavated in the 20th century. They provide a snapshot of Roman life from 2000 years ago: perfectly preserved are wooden objects, food items, and the casts of hundreds of victims. Vesuvius is intensively monitored for potential signs of unrest that could signal the beginning of another eruption. The image is centered at 40.8 degrees north latitude, 14.4 degrees east longitude. http://photojournal.jpl.nasa.gov/catalog/PIA11091

Combining Feature Selection and Integration—A Neural Model for MT Motion Selectivity

PubMed Central

Beck, Cornelia; Neumann, Heiko

2011-01-01

Background The computation of pattern motion in visual area MT based on motion input from area V1 has been investigated in many experiments and models attempting to replicate the main mechanisms. Two different core conceptual approaches were developed to explain the findings. In integrationist models the key mechanism to achieve pattern selectivity is the nonlinear integration of V1 motion activity. In contrast, selectionist models focus on the motion computation at positions with 2D features. Methodology/Principal Findings Recent experiments revealed that neither of the two concepts alone is sufficient to explain all experimental data and that most of the existing models cannot account for the complex behaviour found. MT pattern selectivity changes over time for stimuli like type II plaids from vector average to the direction computed with an intersection of constraint rule or by feature tracking. Also, the spatial arrangement of the stimulus within the receptive field of a MT cell plays a crucial role. We propose a recurrent neural model showing how feature integration and selection can be combined into one common architecture to explain these findings. The key features of the model are the computation of 1D and 2D motion in model area V1 subpopulations that are integrated in model MT cells using feedforward and feedback processing. Our results are also in line with findings concerning the solution of the aperture problem. Conclusions/Significance We propose a new neural model for MT pattern computation and motion disambiguation that is based on a combination of feature selection and integration. The model can explain a range of recent neurophysiological findings including temporally dynamic behaviour. PMID:21814543

mtDNA variation in caste populations of Andhra Pradesh, India.

PubMed

Bamshad, M; Fraley, A E; Crawford, M H; Cann, R L; Busi, B R; Naidu, J M; Jorde, L B

1996-02-01

Various anthropological analyses have documented extensive regional variation among populations on the subcontinent of India using morphological, protein, blood group, and nuclear DNA polymorphisms. These patterns are the product of complex population structure (genetic drift, gene flow) and a population history noted for numerous branching events. As a result, the interpretation of relationships among caste populations of South India and between Indians and continental populations remains controversial. The Hindu caste system is a general model of genetic differentiation among endogamous populations stratified by social forces (e.g., religion and occupation). The mitochondrial DNA (mtDNA) molecule has unique properties that facilitate the exploration of population structure. We analyzed 36 Hindu men born in Andhra Pradesh who were unrelated matrilineally through at least 3 generations and who represent 4 caste populations: Brahmin (9), Yadava (10), Kapu (7), and Relli (10). Individuals from Africa (36), Asia (36), and Europe (36) were sampled for comparison. A 200-base-pair segment of hypervariable segment 2 (HVS2) of the mtDNA control region was sequenced in all individuals. In the Indian castes 25 distinct haplotypes are identified. Aside from the Cambridge reference sequence, only two haplotypes are shared between caste populations. Middle castes form a highly supported cluster in a neighbor-joining network. Mean nucleotide diversity within each caste is 0.015, 0.012, 0.011, and 0.012 for the Brahmin, Yadava, Kapu, and Relli, respectively. mtDNA variation is highly structured between castes (GST = 0.17; p < 0.002). The effects of social structure on mtDNA variation are much greater than those on variation measured by traditional markers. Explanations for this discordance include (1) the higher resolving power of mtDNA, (2) sex-dependent gene flow, (3) differences in male and female effective population sizes, and (4) elements of the kinship structure. Thirty

Propagation of dikes at Vesuvio (Italy) and the effect of Mt. Somma

NASA Astrophysics Data System (ADS)

Acocella, V.; Porreca, M.; Neri, M.; Massimi, E.; Mattei, M.

2006-04-01

Dikes provide crucial information on how magma propagates within volcanoes. Somma-Vesuvio (Italy) consists of the active Vesuvio cone, partly bordered by the older Mt. Somma edifice. Historical chronicles on the fissure eruptions in 1694-1944 are matched with an analytical solution to define the propagation path of the related dikes and to study any control of the Mt. Somma relief. The fissures always consisted of the downslope migration of vents from an open summit conduit, indicating lateral propagation as the predominant mechanism for shallow dike emplacement. No fissure emplaced beyond Mt. Somma, suggesting that its buttressing hinders the propagation of the radial dikes. An analytical solution is defined to describe the mechanism of formation of the laterally propagating dikes and to evaluate the effect of topography. The application to Somma-Vesuvio suggests that, under ordinary excess magmatic pressures, the dikes should not propagate laterally at depths >240-480 m below the surface, as the increased lithostatic pressure requires magmatic pressures higher than average. This implies that, when the conduit is open, the lateral emplacement of dikes is expectable on the S, W and E slopes. The lack of fissures N of Mt. Somma is explained by its buttressing, which hinders dike propagation.

Stereo Image of Mt. Usu Volcano

NASA Technical Reports Server (NTRS)

2002-01-01

On April 3, the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) on NASA's Terra Satellite captured this image of the erupting Mt. Usu volcano in Hokkaido, Japan. This anaglyph stereo image is of Mt Usu volcano. On Friday, March 31, more than 15,000 people were evacuated by helicopter, truck and boat from the foot of Usu, that began erupting from the northwest flank, shooting debris and plumes of smoke streaked with blue lightning thousands of feet in the air. Although no lava gushed from the mountain, rocks and ash continued to fall after the eruption. The region was shaken by thousands of tremors before the eruption. People said they could taste grit from the ash that was spewed as high as 2,700 meters (8,850 ft) into the sky and fell to coat surrounding towns with ash. A 3-D view can be obtained by looking through stereo glasses, with the blue film through your left eye and red film with your right eye at the same time. North is on your right hand side. For more information, see When Rivers of Rock Flow ASTER web page Image courtesy of MITI, ERSDAC, JAROS, and the U.S./Japan ASTER Science Team

Microtron MT 25 as a source of neutrons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kralik, M.; Solc, J.; Chvatil, D.

2012-08-15

The objective was to describe Microtron MT25 as a source of neutrons generated by bremsstrahlung induced photonuclear reactions in U and Pb targets. Bremsstrahlung photons were produced by electrons accelerated at energy 21.6 MeV. Spectral fluence of the generated neutrons was calculated with MCNPX code and then experimentally determined at two positions by means of a Bonner spheres spectrometer in which the detector of thermal neutrons was replaced by activation Mn tablets or track detectors CR-39 with a {sup 10}B radiator. The measured neutron spectral fluence and the calculated anisotropy served for the estimation of neutron yield from the targetsmore » and for the determination of ambient dose equivalent rate at the place of measurement. Microtron MT25 is intended as one of the sources for testing neutron sensitive devices which will be sent into the space.« less

Mt. Etna, Sicily as seen from STS-64

NASA Image and Video Library

1994-09-19

STS064-71-037 (9-20 Sept. 1994) --- Mt. Etna on Sicily displays a steam plume from its summit. Geologists attribute the volcano's existence to the collision of tectonic plates. Unlike the sudden, explosive eruption at Rabaul, Mt. Etna's activity is ongoing and is generally not explosive - Etna's slopes have been settled with villages and cultivated land for centuries. Other Mediterranean volcanoes (like Santorini) have experienced large catastrophic eruptions. Etna recently finished a two-year eruption (ending in 1993), marked by relatively gentle lava flows down the eastern flank. It has been continually degassing since then, according to the geologists, producing an omnipresent steam plume, as seen here. The 1993 flow is difficult to identify in this image because it lies within shadows on the eastern flank, but small cinder cones on the western flank mark earlier episodes of volcanic activity. Photo credit: NASA or National Aeronautics and Space Administration

Impact of Sleeping Altitude on Symptoms of Acute Mountain Sickness on Mt. Fuji.

PubMed

Horiuchi, Masahiro; Uno, Tadashi; Endo, Junko; Handa, Yoko; Hasegawa, Tatsuya

2018-05-09

Horiuchi, Masahiro, Tadashi Uno, Junko Endo, Yoko Handa, and Tatsuya Hasegawa. Impact of sleeping altitude on symptoms of acute mountain sickness on Mt. Fuji. High Alt Med Biol. 00:000-000, 2018. We sought to investigate the factors influencing acute mountain sickness (AMS) on Mt. Fuji in Japan, in particular, to assess the effects of sleeping altitude, by means of a questionnaire survey. This study involved 1932 participants who climbed Mt. Fuji, and obtained information regarding sex, age, and whether participants stayed at the mountain lodges. The AMS survey excluded the perceived sleep difficulties assessed with the Lake Louise Scoring (LLS) system for all climbers. The overall prevalence of AMS was 31.6% for all participants (LLS score ≥3 with headache, excluding sleep difficulties). A univariate analysis revealed that overnight stay at Mt. Fuji was associated with an increased prevalence of AMS, but that sex and age were not. For overnight lodgers, the mean sleeping altitude in participants with AMS was slightly higher than that in participants without AMS (p < 0.05). Moreover, participants who stayed above 2870 m were more likely to experience AMS than those who stayed below 2815 m (p < 0.001), but sex and age were not significantly associated with the probability of experiencing AMS. Staying overnight at a mountain lodge, especially one above 2870 m, may be associated with an increased prevalence of AMS on Mt. Fuji.

A novel mutation MT-COIII m.9267G>C and MT-COI m.5913G>A mutation in mitochondrial genes in a Tunisian family with maternally inherited diabetes and deafness (MIDD) associated with sever nephropathy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tabebi, Mouna, E-mail: mouna.biologiste@yahoo.com; Mkaouar-Rebai, Emna; Mnif, Mouna

Mitochondrial diabetes (MD) is a heterogeneous disorder characterized by a chronic hyperglycemia, maternal transmission and its association with a bilateral hearing impairment. Several studies reported mutations in mitochondrial genes as potentially pathogenic for diabetes, since mitochondrial oxidative phosphorylation plays an important role in glucose-stimulated insulin secretion from beta cells. In the present report, we studied a Tunisian family with mitochondrial diabetes (MD) and deafness associated with nephropathy. The mutational analysis screening revealed the presence of a novel heteroplasmic mutation m.9276G>C in the mitochondrial COIII gene, detected in mtDNA extracted from leukocytes of a mother and her two daughters indicating thatmore » this mutation is maternally transmitted and suggest its implication in the observed phenotype. Bioinformatic tools showed that m.9267G>C mutation (p.A21P) is « deleterious » and it can modify the function and the stability of the MT-COIII protein by affecting the assembly of mitochondrial COX subunits and the translocation of protons then reducing the activity of the respective OXPHOS complexes of ATP synthesis. The nonsynonymous mutation (p.A21P) has not been reported before, it is the first mutation described in the COXIII gene which is related to insulin dependent mitochondrial diabetes and deafness and could be specific to the Tunisian population. The m.9267G>C mutation was present with a nonsynonymous inherited mitochondrial homoplasmic variation MT-COI m.5913 G>A (D4N) responsible of high blood pressure, a clinical feature detected in all explored patients. - Highlights: • MT-COX3 m.9267G>C (p.A21P), heteroplasmic substitution, is not reported in any database. • m.9267G>C can be responsible of the MIDD associated with nephropaty. • This substitution can modify the function and the stability of the MT-CO3 protein. • This substitution can modify MT-CO3 structure (2D and 3D). • MT-COX3 m.9267G>C is

A defect in the thymidine kinase 2 gene causing isolated mitochondrial myopathy without mtDNA depletion.

PubMed

Leshinsky-Silver, E; Michelson, M; Cohen, S; Ginsberg, M; Sadeh, M; Barash, V; Lerman-Sagie, T; Lev, D

2008-07-01

Isolated mitochondrial myopathies (IMM) are either due to primary defects in mtDNA, in nuclear genes that control mtDNA abundance and structure such as thymidine kinase 2 (TK2), or due to CoQ deficiency. Defects in the TK2 gene have been found to be associated with mtDNA depletion attributed to a depleted mitochondrial dNTP pool in non-dividing cells. We report an unusual case of IMM, homozygous for the H90N mutation in the TK2 gene but unlike other cases with the same mutation, does not demonstrate mtDNA depletion. The patient's clinical course is relatively mild and a muscle biopsy showed ragged red muscle fibers with a mild decrease in complexes I and an increase in complexes IV and II activities. This report extends the phenotypic expression of TK2 defects and suggests that all patients who present with an IMM even with normal quantities of mtDNA should be screened for TK2 mutations.

Three-dimensional geophysical mapping of rock alteration and water content at Mount Adams, Washington: Implications for lahar hazards

USGS Publications Warehouse

Finn, C.A.; Deszcz-Pan, M.; Anderson, E.D.; John, D.A.

2007-01-01

Hydrothermally altered rocks, particularly if water saturated, can weaken stratovolcanoes, thereby increasing the potential for catastrophic sector collapses that can lead to far-traveled, destructive debris flows. Evaluating the hazards associated with such alteration is difficult because alteration has been mapped on few active volcanoes and the distribution and intensity of subsurface alteration are largely unknown on any active volcano. At Mount Adams, some Holocene debris flows contain abundant hydrothermal minerals derived from collapse of the altered, edifice. Intense hydrothermal alteration significantly reduces the resistivity and magnetization of volcanic rock, and therefore hydrothermally altered rocks can be identified with helicopter electromagnetic and magnetic measurements. Electromagnetic and magnetic data, combined with geological mapping and rock property measurements, indicate the presence of appreciable thicknesses of hydrothermally altered rock in the central core of Mount Adams north of the summit. We identify steep cliffs at the western edge of this zone as the likely source for future large debris flows. In addition, the electromagnetic data identified water in the brecciated core of the upper 100-200 m of the volcano. Water helps alter the rocks, reduces the effective stress, thereby increasing the potential for slope failure, and acts, with entrained melting ice, as a lubricant to transform debris avalanches into lahars. Therefore knowing the distribution of water is also important for hazard assessments. Our results demonstrate that high-resolution geophysical and geological observations can yield unprecedented views of the three-dimensional distribution of altered rock and shallow pore water aiding evaluation of the debris avalanche hazard.

Mt. Kilimanjaro's Receding Glaciers

NASA Technical Reports Server (NTRS)

2002-01-01

Mt. Kilimanjaro (Tanzania), the highest point in all Africa, was photographed by the crew of Space Shuttle mission STS-97 on December 2, 2000 (STS097-701-17). Kilimanjaro (Kilima Njaro or 'shining mountain' in Swahili) is capped by glaciers on its southern and southwestern flanks. The glaciers and snow cap covered a far greater area ten years prior to the view above. Compare the photograph above with a photograph of Kilimanjaro taken in November 1990 by the Space Shuttle mission STS-38 crew. Shuttle photograph provided by the Earth Sciences and Image Analysis Laboratory, Johnson Space Center. Additional photographs taken by astronauts and cosmonauts can be viewed via the NASA - JSC Gateway to Astronaut Photography of Earth.

Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers

PubMed Central

2011-01-01

Background The classical perspective that interspecific hybridization in animals is rare has been changing due to a growing list of empirical examples showing the occurrence of gene flow between closely related species. Using sequence data from cyt b mitochondrial gene and three intron nuclear genes (RPL9, c-myc, and RPL3) we investigated patterns of nucleotide polymorphism and divergence between two closely related toad species R. marina and R. schneideri. By comparing levels of differentiation at nuclear and mtDNA levels we were able to describe patterns of introgression and infer the history of hybridization between these species. Results All nuclear loci are essentially concordant in revealing two well differentiated groups of haplotypes, corresponding to the morphologically-defined species R. marina and R. schneideri. Mitochondrial DNA analysis also revealed two well-differentiated groups of haplotypes but, in stark contrast with the nuclear genealogies, all R. schneideri sequences are clustered with sequences of R. marina from the right Amazon bank (RAB), while R. marina sequences from the left Amazon bank (LAB) are monophyletic. An Isolation-with-Migration (IM) analysis using nuclear data showed that R. marina and R. schneideri diverged at ≈ 1.69 Myr (early Pleistocene), while R. marina populations from LAB and RAB diverged at ≈ 0.33 Myr (middle Pleistocene). This time of divergence is not consistent with the split between LAB and RAB populations obtained with mtDNA data (≈ 1.59 Myr), which is notably similar to the estimate obtained with nuclear genes between R. marina and R. schneideri. Coalescent simulations of mtDNA phylogeny under the speciation history inferred from nuclear genes rejected the hypothesis of incomplete lineage sorting to explain the conflicting signal between mtDNA and nuclear-based phylogenies. Conclusions The cytonuclear discordance seems to reflect the occurrence of interspecific hybridization between these two closely related

The influence of regional extensional tectonic stress on the eruptive behaviour of subduction-zone volcanoes

NASA Astrophysics Data System (ADS)

Tost, M.; Cronin, S. J.

2015-12-01

Regional tectonic stress is considered a trigger mechanism for explosive volcanic activity, but the related mechanisms at depth are not well understood. The unique geological setting of Ruapehu, New Zealand, allows investigation on the effect of enhanced regional extensional crustal tension on the eruptive behaviour of subduction-zone volcanoes. The composite cone is located at the southwestern terminus of the Taupo Volcanic Zone, one of the most active silicic magma systems on Earth, which extends through the central part of New Zealand's North Island. Rhyolitic caldera eruptions are limited to its central part where crustal extension is highest, whereas lower extension and additional dextral shear dominate in the southwestern and northeastern segments characterized by andesitic volcanism. South of Ruapehu, the intra-arc rift zone traverses into a compressional geological setting with updoming marine sequences dissected by reverse and normal faults. The current eruptive behaviour of Ruapehu is dominated by small-scaled vulcanian eruptions, but our studies indicate that subplinian to plinian eruptions have frequently occurred since ≥340 ka and were usually preceded by major rhyolitic caldera unrest in the Taupo Volcanic Zone. Pre-existing structures related to the NNW-SSE trending subduction-zone setting are thought to extend at depth and create preferred pathways for the silicic magma bodies, which may facilitate the development of large (>100 km3) dyke-like upper-crustal storage systems prior to major caldera activity. This may cause enhanced extensional stress throughout the entire intra-arc setting, including the Ruapehu area. During periods of caldera dormancy, the thick crust underlying the volcano and the enhanced dextral share rate likely impede ascent of larger andesitic magma bodies, and storage of andesitic melts dominantly occurs within small-scaled magma bodies at middle- to lower-crustal levels. During episodes of major caldera unrest, ascent and

Cumulative mtDNA damage and mutations contribute to the progressive loss of RGCs in a rat model of glaucoma.

PubMed

Wu, Ji-Hong; Zhang, Sheng-Hai; Nickerson, John M; Gao, Feng-Juan; Sun, Zhongmou; Chen, Xin-Ya; Zhang, Shu-Jie; Gao, Feng; Chen, Jun-Yi; Luo, Yi; Wang, Yan; Sun, Xing-Huai

2015-02-01

Glaucoma is a chronic neurodegenerative disease characterized by the progressive loss of retinal ganglion cells (RGCs). Mitochondrial DNA (mtDNA) alterations have been documented as a key component of many neurodegenerative disorders. However, whether mtDNA alterations contribute to the progressive loss of RGCs and the mechanism whereby this phenomenon could occur are poorly understood. We investigated mtDNA alterations in RGCs using a rat model of chronic intraocular hypertension and explored the mechanisms underlying progressive RGC loss. We demonstrate that the mtDNA damage and mutations triggered by intraocular pressure (IOP) elevation are initiating, crucial events in a cascade leading to progressive RGC loss. Damage to and mutation of mtDNA, mitochondrial dysfunction, reduced levels of mtDNA repair/replication enzymes, and elevated reactive oxygen species form a positive feedback loop that produces irreversible mtDNA damage and mutation and contributes to progressive RGC loss, which occurs even after a return to normal IOP. Furthermore, we demonstrate that mtDNA damage and mutations increase the vulnerability of RGCs to elevated IOP and glutamate levels, which are among the most common glaucoma insults. This study suggests that therapeutic approaches that target mtDNA maintenance and repair and that promote energy production may prevent the progressive death of RGCs. Copyright © 2014 Elsevier Inc. All rights reserved.

Melatonin acts through MT1/MT2 receptors to activate hypothalamic Akt and suppress hepatic gluconeogenesis in rats.

PubMed

Faria, Juliana A; Kinote, Andrezza; Ignacio-Souza, Letícia M; de Araújo, Thiago M; Razolli, Daniela S; Doneda, Diego L; Paschoal, Lívia B; Lellis-Santos, Camilo; Bertolini, Gisele L; Velloso, Lício A; Bordin, Silvana; Anhê, Gabriel F

2013-07-15

Melatonin can contribute to glucose homeostasis either by decreasing gluconeogenesis or by counteracting insulin resistance in distinct models of obesity. However, the precise mechanism through which melatonin controls glucose homeostasis is not completely understood. Male Wistar rats were administered an intracerebroventricular (icv) injection of melatonin and one of following: an icv injection of a phosphatidylinositol 3-kinase (PI3K) inhibitor, an icv injection of a melatonin receptor (MT) antagonist, or an intraperitoneal (ip) injection of a muscarinic receptor antagonist. Anesthetized rats were subjected to pyruvate tolerance test to estimate in vivo glucose clearance after pyruvate load and in situ liver perfusion to assess hepatic gluconeogenesis. The hypothalamus was removed to determine Akt phosphorylation. Melatonin injections in the central nervous system suppressed hepatic gluconeogenesis and increased hypothalamic Akt phosphorylation. These effects of melatonin were suppressed either by icv injections of PI3K inhibitors and MT antagonists and by ip injection of a muscarinic receptor antagonist. We conclude that melatonin activates hypothalamus-liver communication that may contribute to circadian adjustments of gluconeogenesis. These data further suggest a physiopathological relationship between the circadian disruptions in metabolism and reduced levels of melatonin found in type 2 diabetes patients.

76 FR 9991 - Television Broadcasting Services; Kalispell, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-23

... FEDERAL COMMUNICATIONS COMMISSION 47 CFR Part 73 [DA 11-224; MB Docket No. 11-20; RM-11619] Television Broadcasting Services; Kalispell, MT AGENCY: Federal Communications Commission. ACTION: Proposed... before March 25, 2011, and reply comments on or before April 11, 2011. ADDRESSES: Federal Communications...

76 FR 27914 - Television Broadcasting Services; Kalispell, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-13

... FEDERAL COMMUNICATIONS COMMISSION 47 CFR Part 73 [MB Docket No. 11-20; RM-11619, DA 11-750] Television Broadcasting Services; Kalispell, MT AGENCY: Federal Communications Commission. ACTION: Final rule... rulemaking filed by Montana State University (``MSU'') requesting that channel *46 be transferred from the...

Special issue “The phreatic eruption of Mt. Ontake volcano in 2014”

USGS Publications Warehouse

Yamaoka, Koshun; Geshi, Nobuo; Hashimoto, Tasheki; Ingebritsen, Steven E.; Oikawa, Teruki

2016-01-01

Mt. Ontake volcano erupted at 11:52 on September 27, 2014, claiming the lives of at least 58 hikers. This eruption was the worst volcanic disaster in Japan since the 1926 phreatic eruption of Mt. Tokachidake claimed 144 lives (Table 1). The timing of the eruption contributed greatly to the heavy death toll: near midday, when many hikers were near the summit, and during a weekend of clear weather conditions following several rainy weekends. The importance of this timing is reflected by the fact that a somewhat larger eruption of Mt. Ontake in 1979 resulted in injuries but no deaths. In 2014, immediate precursors were detected with seismometers and tiltmeters about 10 min before the eruption, but the eruption started before a warning was issued.

Joint inversion of marine MT and CSEM data over Gemini prospect, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Constable, S.; Orange, A. S.; Key, K.

2013-12-01

In 2003 we tested a prototype marine controlled-source electromagnetic (CSEM) transmitter over the Gemini salt body in the Gulf of Mexico, collecting one line of data over 15 seafloor receiver instruments using the Cox waveform with a 0.25 Hz fundamental, yielding 3 usable frequencies. Transmission current was 95 amps on a 150 m antenna. We had previously collected 16 sites of marine magnetotelluric (MT) data along this line during the development of broadband marine MT as a tool for mapping salt geometry. Recently we commissioned a finite element code capable of joint CSEM and MT 2D inversion incorporating bathymetry and anisotropy, and this heritage data set provided an opportunity to explore such inversions with real data. We reprocessed the CSEM data to obtain objective error estimates and inverted single frequency CSEM, multi-frequency CSEM, MT, and joint MT and CSEM data sets for a variety of target misfits, using the Occam regularized inversion algorithm. As expected, MT-only inversions produce a smoothed image of the salt and a resistive basement at 9 km depth. The CSEM data image a conductive cap over the salt body and have little sensitivity to the salt or structure at depths beyond about 1500 m below seafloor. However, the joint inversion yields more than the sum of the parts - the outline of the salt body is much sharper and there is much more structural detail even at depths beyond the resolution of the CSEM data. As usual, model complexity greatly depends on target misfit, and even with well-estimated errors the choice of misfit becomes a somewhat subjective decision. Our conclusion is a familiar one; more data are always good.

Thymidine kinase and mtDNA depletion in human cardiomyopathy: epigenetic and translational evidence for energy starvation

PubMed Central

Koczor, Christopher A.; Torres, Rebecca A.; Fields, Earl J.; Boyd, Amy; He, Stanley; Patel, Nilamkumar; Lee, Eva K.; Samarel, Allen M.

2013-01-01

This study addresses how depletion of human cardiac left ventricle (LV) mitochondrial DNA (mtDNA) and epigenetic nuclear DNA methylation promote cardiac dysfunction in human dilated cardiomyopathy (DCM) through regulation of pyrimidine nucleotide kinases. Samples of DCM LV and right ventricle (n = 18) were obtained fresh at heart transplant surgery. Parallel samples from nonfailing (NF) controls (n = 12) were from donor hearts found unsuitable for clinical use. We analyzed abundance of mtDNA and nuclear DNA (nDNA) using qPCR. LV mtDNA was depleted in DCM (50%, P < 0.05 each) compared with NF. No detectable change in RV mtDNA abundance occurred. DNA methylation and gene expression were determined using microarray analysis (GEO accession number: GSE43435). Fifty-seven gene promoters exhibited DNA hypermethylation or hypomethylation in DCM LVs. Among those, cytosolic thymidine kinase 1 (TK1) was hypermethylated. Expression arrays revealed decreased abundance of the TK1 mRNA transcript with no change in transcripts for other relevant thymidine metabolism enzymes. Quantitative immunoblots confirmed decreased TK1 polypeptide steady state abundance. TK1 activity remained unchanged in DCM samples while mitochondrial thymidine kinase (TK2) activity was significantly reduced. Compensatory TK activity was found in cardiac myocytes in the DCM LV. Diminished TK2 activity is mechanistically important to reduced mtDNA abundance and identified in DCM LV samples here. Epigenetic and genetic changes result in changes in mtDNA and in nucleotide substrates for mtDNA replication and underpin energy starvation in DCM. PMID:23695887

Thymidine kinase 2 deficiency-induced mtDNA depletion in mouse liver leads to defect β-oxidation.

PubMed

Zhou, Xiaoshan; Kannisto, Kristina; Curbo, Sophie; von Döbeln, Ulrika; Hultenby, Kjell; Isetun, Sindra; Gåfvels, Mats; Karlsson, Anna

2013-01-01

Thymidine kinase 2 (TK2) deficiency in humans causes mitochondrial DNA (mtDNA) depletion syndrome. To study the molecular mechanisms underlying the disease and search for treatment options, we previously generated and described a TK2 deficient mouse strain (TK2(-/-)) that progressively loses its mtDNA. The TK2(-/-) mouse model displays symptoms similar to humans harboring TK2 deficient infantile fatal encephalomyopathy. Here, we have studied the TK2(-/-) mouse model to clarify the pathological role of progressive mtDNA depletion in liver for the severe outcome of TK2 deficiency. We observed that a gradual depletion of mtDNA in the liver of the TK2(-/-) mice was accompanied by increasingly hypertrophic mitochondria and accumulation of fat vesicles in the liver cells. The levels of cholesterol and nonesterified fatty acids were elevated and there was accumulation of long chain acylcarnitines in plasma of the TK2(-/-) mice. In mice with hepatic mtDNA levels below 20%, the blood sugar and the ketone levels dropped. These mice also exhibited reduced mitochondrial β-oxidation due to decreased transport of long chain acylcarnitines into the mitochondria. The gradual loss of mtDNA in the liver of the TK2(-/-) mice causes impaired mitochondrial function that leads to defect β-oxidation and, as a result, insufficient production of ketone bodies and glucose. This study provides insight into the mechanism of encephalomyopathy caused by TK2 deficiency-induced mtDNA depletion that may be used to explore novel therapeutic strategies.

Thymidine Kinase 2 Deficiency-Induced mtDNA Depletion in Mouse Liver Leads to Defect β-Oxidation

PubMed Central

von Döbeln, Ulrika; Hultenby, Kjell; Isetun, Sindra; Gåfvels, Mats; Karlsson, Anna

2013-01-01

Thymidine kinase 2 (TK2) deficiency in humans causes mitochondrial DNA (mtDNA) depletion syndrome. To study the molecular mechanisms underlying the disease and search for treatment options, we previously generated and described a TK2 deficient mouse strain (TK2−/−) that progressively loses its mtDNA. The TK2−/− mouse model displays symptoms similar to humans harboring TK2 deficient infantile fatal encephalomyopathy. Here, we have studied the TK2−/− mouse model to clarify the pathological role of progressive mtDNA depletion in liver for the severe outcome of TK2 deficiency. We observed that a gradual depletion of mtDNA in the liver of the TK2−/− mice was accompanied by increasingly hypertrophic mitochondria and accumulation of fat vesicles in the liver cells. The levels of cholesterol and nonesterified fatty acids were elevated and there was accumulation of long chain acylcarnitines in plasma of the TK2−/− mice. In mice with hepatic mtDNA levels below 20%, the blood sugar and the ketone levels dropped. These mice also exhibited reduced mitochondrial β-oxidation due to decreased transport of long chain acylcarnitines into the mitochondria. The gradual loss of mtDNA in the liver of the TK2−/− mice causes impaired mitochondrial function that leads to defect β-oxidation and, as a result, insufficient production of ketone bodies and glucose. This study provides insight into the mechanism of encephalomyopathy caused by TK2 deficiency-induced mtDNA depletion that may be used to explore novel therapeutic strategies. PMID:23505564

Regulation of microtubule (MT)-based cytoskeleton in the seminiferous epithelium during spermatogenesis

PubMed Central

Tang, Elizabeth I.; Mruk, Dolores D.; Cheng, C. Yan

2016-01-01

In rodents and humans, testicular cells, similar to other mammalian cells, are supported by actin-, microtubule (MT)- and intermediate filament-based cytoskeletons to regulate spermatogenesis during the epithelial cycle. However, most of the published findings in the literature are limited to studies that visualize these cytoskeletons in the seminiferous epithelium during spermatogenesis. Few are focus on the underlying molecular mechanism that regulates their organization in the epithelium in response to changes in the stages of the epithelial cycle remains largely explored. Functional studies in the last decade have begun to focus on the role of binding proteins that regulate these cytoskeletons, and some interesting data have been rapidly emerging in the field. Since the actin- and intermediate-based cytoskeletons have been recently reviewed, herein we focus on the MT-based cytoskeleton for two reasons. First, besides serving as a structural support cytoskeleton, MT is known to serve as the track to support and facilitate the transport of germ cells, such as preleptotene spermatocytes connected in clones and elongating/elongated spermatids during spermiogenesis across the blood-testis barrier (BTB) and the adluminal compartment, respectively, during spermatogenesis. While these cellular events are crucial to the completion of spermatogenesis, they have been largely ignored in the past. Second, MT-based cytoskeleton is working in concert with the actin-based cytoskeleton to provide structural support to the transport of intracellular organelles across the cell cytosol, such as endosome-based vesicles, and residual bodies, phagosomes in Sertoli cells, to maintain the cellular homeostasis in the seminiferous epithelium. We critically evaluate some recent published findings herein to support a hypothesis regarding the role of MT in conferring germ cell transport in the seminiferous epithelium. PMID:26791048

Effect of feature-selective attention on neuronal responses in macaque area MT

PubMed Central

Chen, X.; Hoffmann, K.-P.; Albright, T. D.

2012-01-01

Attention influences visual processing in striate and extrastriate cortex, which has been extensively studied for spatial-, object-, and feature-based attention. Most studies exploring neural signatures of feature-based attention have trained animals to attend to an object identified by a certain feature and ignore objects/displays identified by a different feature. Little is known about the effects of feature-selective attention, where subjects attend to one stimulus feature domain (e.g., color) of an object while features from different domains (e.g., direction of motion) of the same object are ignored. To study this type of feature-selective attention in area MT in the middle temporal sulcus, we trained macaque monkeys to either attend to and report the direction of motion of a moving sine wave grating (a feature for which MT neurons display strong selectivity) or attend to and report its color (a feature for which MT neurons have very limited selectivity). We hypothesized that neurons would upregulate their firing rate during attend-direction conditions compared with attend-color conditions. We found that feature-selective attention significantly affected 22% of MT neurons. Contrary to our hypothesis, these neurons did not necessarily increase firing rate when animals attended to direction of motion but fell into one of two classes. In one class, attention to color increased the gain of stimulus-induced responses compared with attend-direction conditions. The other class displayed the opposite effects. Feature-selective activity modulations occurred earlier in neurons modulated by attention to color compared with neurons modulated by attention to motion direction. Thus feature-selective attention influences neuronal processing in macaque area MT but often exhibited a mismatch between the preferred stimulus dimension (direction of motion) and the preferred attention dimension (attention to color). PMID:22170961

Effect of feature-selective attention on neuronal responses in macaque area MT.

PubMed

Chen, X; Hoffmann, K-P; Albright, T D; Thiele, A

2012-03-01

Attention influences visual processing in striate and extrastriate cortex, which has been extensively studied for spatial-, object-, and feature-based attention. Most studies exploring neural signatures of feature-based attention have trained animals to attend to an object identified by a certain feature and ignore objects/displays identified by a different feature. Little is known about the effects of feature-selective attention, where subjects attend to one stimulus feature domain (e.g., color) of an object while features from different domains (e.g., direction of motion) of the same object are ignored. To study this type of feature-selective attention in area MT in the middle temporal sulcus, we trained macaque monkeys to either attend to and report the direction of motion of a moving sine wave grating (a feature for which MT neurons display strong selectivity) or attend to and report its color (a feature for which MT neurons have very limited selectivity). We hypothesized that neurons would upregulate their firing rate during attend-direction conditions compared with attend-color conditions. We found that feature-selective attention significantly affected 22% of MT neurons. Contrary to our hypothesis, these neurons did not necessarily increase firing rate when animals attended to direction of motion but fell into one of two classes. In one class, attention to color increased the gain of stimulus-induced responses compared with attend-direction conditions. The other class displayed the opposite effects. Feature-selective activity modulations occurred earlier in neurons modulated by attention to color compared with neurons modulated by attention to motion direction. Thus feature-selective attention influences neuronal processing in macaque area MT but often exhibited a mismatch between the preferred stimulus dimension (direction of motion) and the preferred attention dimension (attention to color).

Canis mtDNA HV1 database: a web-based tool for collecting and surveying Canis mtDNA HV1 haplotype in public database.

PubMed

Thai, Quan Ke; Chung, Dung Anh; Tran, Hoang-Dung

2017-06-26

Canine and wolf mitochondrial DNA haplotypes, which can be used for forensic or phylogenetic analyses, have been defined in various schemes depending on the region analyzed. In recent studies, the 582 bp fragment of the HV1 region is most commonly used. 317 different canine HV1 haplotypes have been reported in the rapidly growing public database GenBank. These reported haplotypes contain several inconsistencies in their haplotype information. To overcome this issue, we have developed a Canis mtDNA HV1 database. This database collects data on the HV1 582 bp region in dog mitochondrial DNA from the GenBank to screen and correct the inconsistencies. It also supports users in detection of new novel mutation profiles and assignment of new haplotypes. The Canis mtDNA HV1 database (CHD) contains 5567 nucleotide entries originating from 15 subspecies in the species Canis lupus. Of these entries, 3646 were haplotypes and grouped into 804 distinct sequences. 319 sequences were recognized as previously assigned haplotypes, while the remaining 485 sequences had new mutation profiles and were marked as new haplotype candidates awaiting further analysis for haplotype assignment. Of the 3646 nucleotide entries, only 414 were annotated with correct haplotype information, while 3232 had insufficient or lacked haplotype information and were corrected or modified before storing in the CHD. The CHD can be accessed at http://chd.vnbiology.com . It provides sequences, haplotype information, and a web-based tool for mtDNA HV1 haplotyping. The CHD is updated monthly and supplies all data for download. The Canis mtDNA HV1 database contains information about canine mitochondrial DNA HV1 sequences with reconciled annotation. It serves as a tool for detection of inconsistencies in GenBank and helps identifying new HV1 haplotypes. Thus, it supports the scientific community in naming new HV1 haplotypes and to reconcile existing annotation of HV1 582 bp sequences.

Facile preparation and characterization of pH sensitive Mt/CMC nanocomposite hydrogel beads for propranolol controlled release.

PubMed

Farhadnejad, Hassan; Mortazavi, Seyed Alireza; Erfan, Mohammad; Darbasizadeh, Behzad; Motasadizadeh, Hamidreza; Fatahi, Yousef

2018-05-01

The main aim of the present study was to design pH-sensitive nanocomposite hydrogel beads, based on carboxymethyl cellulose (CMC) and montmorillonite (Mt)-propranolol (PPN) nanohybrid, and evaluate whether the prepared nanocomposite beads could potentially be used as oral drug delivery systems. PPN-as a model drug-was intercalated into the interlayer space of Mt clay mineral via the ion exchange procedure. The resultant nanohybrid (Mt-PPN) was applied to fabricate nanocomposite hydrogel beads by association with carboxymethyl cellulose. The characterization of test samples was performed using different techniques: X-Ray Diffraction (XRD), IR spectroscopy (FT-IR), thermal gravity analysis (TGA), and scanning electron microscopy (SEM). The drug encapsulation efficiency was evaluated by UV-vis spectroscopy, and was found to be high for Mt/CMC beads. In vitro drug release test was performed in the simulated gastrointestinal conditions to evaluate the efficiency of Mt-PPN/CMC nanocomposite beads as a controlled-release drug carrier. The drug release profiles indicated that the Mt-PPN/CMC nanocomposite beads had high stability against stomach acid and a sustained- and controlled-release profile for PPN under the simulated intestinal conditions. Copyright © 2018 Elsevier B.V. All rights reserved.

HMEC-1 adopt the mixed amoeboid-mesenchymal migration type during EndMT.

PubMed

Kryczka, Jakub; Przygodzka, Patrycja; Bogusz, Helena; Boncela, Joanna

2017-06-01

The contribution of endothelial cells to scar and fibrotic tissue formation is undisputedly connected to their ability to undergo the endothelial-to-mesenchymal transition (EndMT) towards fibroblast phenotype-resembling cells. The migration model of fibroblasts and fibroblast-resembling cells is still not fully understood. It may be either a Rho/ROCK-independent, an integrin- and MMP-correlated ECM degradation-dependent, a mesenchymal model or Rho/ROCK-dependent, integrin adhesion- and MMP activity-independent, an amoeboid model. Here, we hypothesized that microvascular endothelial cells (HMEC-1) undergoing EndMT adopt an intermediate state of drifting migration model between the mesenchymal and amoeboid protrusive types in the early stages of fibrosis. We characterized the response of HMEC-1 to TGF-β2, a well-known mediator of EndMT within the microvasculature. We observed that TGF-β2 induces up to an intermediate mesenchymal phenotype in HMEC-1. In parallel, MMP-2 is upregulated and is responsible for most proteolytic activity. Interestingly, the migration of HMEC-1 undergoing EndMT is dependent on both ECM degradation and invadosome formation associated with MMP-2 proteolytic activity and Rho/ROCK cytoskeleton contraction. In conclusion, the transition from mesenchymal towards amoeboid movement highlights a molecular plasticity mechanism in endothelial cell migration in skin fibrosis. Copyright © 2017 Elsevier GmbH. All rights reserved.

Superpartner Mass Measurement Technique using 1D Orthogonal Decompositions of the Cambridge Transverse Mass Variable MT2

NASA Astrophysics Data System (ADS)

Konar, Partha; Kong, Kyoungchul; Matchev, Konstantin T.; Park, Myeonghun

2010-07-01

We propose a new model-independent technique for mass measurements in missing energy events at hadron colliders. We illustrate our method with the most challenging case of a single-step decay chain. We consider inclusive same-sign chargino pair production in supersymmetry, followed by leptonic decays to sneutrinos χ+χ+→ℓ+ℓ'+ν˜ℓν˜ℓ' and invisible decays ν˜ℓ→νℓχ˜10. We introduce two one-dimensional decompositions of the Cambridge MT2 variable: MT2∥ and MT2⊥, on the direction of the upstream transverse momentum P→T and the direction orthogonal to it, respectively. We show that the sneutrino mass Mc can be measured directly by minimizing the number of events N(M˜c) in which MT2 exceeds a certain threshold, conveniently measured from the end point MT2⊥max⁡(M˜c).

Onboard Photo of Mt. Everest

NASA Technical Reports Server (NTRS)

2002-01-01

Astronaut Daniel W. Bursch, Expedition Four flight engineer, was delighted in capturing this image of Mt. Everest in the Himalayan Range from aboard the International Space Station (ISS). The mountain is near frame center. Because the photo was taken close to orbital sunrise, the low sun angle gave tremendous relief to the mountains. Named for Sir George Everest, the British surveyor-general of India, Mount Everest is the tallest point on earth. Standing 29,028 feet tall, it is 5 1/2 miles above sea level. Mount Everest is located half in Nepal and half in Tibet.

Molecular characterization and expression profile of the melatonin receptor MT1 in the ovary of Tianzhu white yak (Bos grunniens).

PubMed

Hu, Jun Jie; Zhang, Xiao Yu; Zhang, Yong; Zhao, Xing Xu; Li, Fa Di; Tao, Jin Zhong

2017-02-01

Melatonin plays crucial roles in a wide range of ovarian physiological functions via the melatonin receptors (MRs). Structure and function of MRs have been well studied in sheep, cattle, and humans, but little information exists on the genetic characterization and function of these receptors in the ovary of the white yak. In the present study, the melatonin receptor MT1 was cloned by RT-PCR in the ovary of white yak; the MT1 cDNA fragment obtained (843bp) comprised an open reading frame (827bp) encoding a protein containing 275 residues, characterized by seven transmembrane regions and an NRY motif, two distinct amino acid replacements were found. The white yak MT1 had a 83.9-98.6% protein sequence identity with that of nine other mammals. Using RT-PCR, the expression levels of MT1, MT2, and LHR in the ovary of pregnant and non-pregnant white yaks were compared, revealing higher levels of all genes in pregnant yaks: 3.83-fold increase for MT1 (P<0.05), 1.39-fold increase for MT2, and 15.32-fold increase for LHR (P<0.05). The distribution of MT1 in yak ovaries was observed using immunohistochemistry on paraffin embedded ovarian sections: MT1 was mainly present on primordial follicles (PF), granulosa cells (GCs), oocytes, and corpus luteum (CL) cells; MT1 expression showed an increasing tendency from PF to GCs to oocytes and to large CL cells. It is suggested that melatonin and MT1 are associated with the corpus luteum function of pregnancy maintenance and follicular development during oocyte maturation in the white yak. Copyright © 2015 Elsevier Inc. All rights reserved.

Segregation of mtDNA Throughout Human Embryofetal Development: m.3243A > G as a Model System

PubMed Central

Monnot, Sophie; Gigarel, Nadine; Samuels, David C; Burlet, Philippe; Hesters, Laetitia; Frydman, Nelly; Frydman, René; Kerbrat, Violaine; Funalot, Benoit; Martinovic, Jelena; Benachi, Alexandra; Feingold, Josué; Munnich, Arnold; Bonnefont, Jean-Paul; Steffann, Julie

2011-01-01

Mitochondrial DNA (mtDNA) mutations cause a wide range of serious diseases with high transmission risk and maternal inheritance. Tissue heterogeneity of the heteroplasmy rate (“mutant load”) accounts for the wide phenotypic spectrum observed in carriers. Owing to the absence of therapy, couples at risk to transmit such disorders commonly ask for prenatal (PND) or preimplantation diagnosis (PGD). The lack of data regarding heteroplasmy distribution throughout intrauterine development, however, hampers the implementation of such procedures. We tracked the segregation of the m.3243A > G mutation (MT-TL1 gene) responsible for the MELAS syndrome in the developing embryo/fetus, using tissues and cells from eight carrier females, their 38 embryos and 12 fetuses. Mutant mtDNA segregation was found to be governed by random genetic drift, during oogenesis and somatic tissue development. The size of the bottleneck operating for m.3243A > G during oogenesis was shown to be individual-dependent. Comparison with data we achieved for the m.8993T > G mutation (MT-ATP6 gene), responsible for the NARP/Leigh syndrome, indicates that these mutations differentially influence mtDNA segregation during oogenesis, while their impact is similar in developing somatic tissues. These data have major consequences for PND and PGD procedures in mtDNA inherited disorders. Hum Mutat 32:116–125, 2011. © 2010 Wiley-Liss, Inc. PMID:21120938

Co-ordinated expression of MMP-2 and its putative activator, MT1-MMP, in human placentation.

PubMed

Bjørn, S F; Hastrup, N; Lund, L R; Danø, K; Larsen, J F; Pyke, C

1997-08-01

The spatial expression of mRNA for matrix metalloproteinase 2 (MMP-2), its putative activator, the membrane-type 1 matrix metalloproteinase (MT1-MMP), and the MMP-2 substrate type IV collagen was investigated in human placentas of both normal and tubal ectopic pregnancies and in cyclic endometrium using in-situ hybridization. Cytokeratin staining applied to adjacent sections was used to identify epithelial and trophoblast cells. In both normal and tubal pregnancies MT1-MMP, MMP-2 and type IV collagen mRNA were highly expressed and co-localized in the extravillous cytotrophoblasts of anchoring villi, in cytotrophoblasts that had penatrated into the placental bed and in cytotrophoblastic cell islands. In addition, the decidual cells of normal pregnancies in some areas co-expressed MT1-MMP and MMP-2 mRNA, with moderate signals for both components. Fibroblast-like stromal cells in tubal pregnancies were positive for MMP-2 mRNA but generally negative for MT1-MMP mRNA. The consistent co-localization of MT1-MMP with MMP-2 and type IV collagen in the same subset of cytotrophoblasts strongly suggests that all three components co-operate in the tightly regulated fetal invasion process. The co-expression of MT1-MMP and MMP-2 mRNA in some of the decidual cells indicates that these cells are also actively involved in the placentation process.

Organization of area hV5/MT+ in subjects with homonymous visual field defects.

PubMed

Papanikolaou, Amalia; Keliris, Georgios A; Papageorgiou, T Dorina; Schiefer, Ulrich; Logothetis, Nikos K; Smirnakis, Stelios M

2018-04-06

Damage to the primary visual cortex (V1) leads to a visual field loss (scotoma) in the retinotopically corresponding part of the visual field. Nonetheless, a small amount of residual visual sensitivity persists within the blind field. This residual capacity has been linked to activity observed in the middle temporal area complex (V5/MT+). However, it remains unknown whether the organization of hV5/MT+ changes following early visual cortical lesions. We studied the organization of area hV5/MT+ of five patients with dense homonymous defects in a quadrant of the visual field as a result of partial V1+ or optic radiation lesions. To do so, we developed a new method, which models the boundaries of population receptive fields directly from the BOLD signal of each voxel in the visual cortex. We found responses in hV5/MT+ arising inside the scotoma for all patients and identified two possible sources of activation: 1) responses might originate from partially lesioned parts of area V1 corresponding to the scotoma, and 2) responses can also originate independent of area V1 input suggesting the existence of functional V1-bypassing pathways. Apparently, visually driven activity observed in hV5/MT+ is not sufficient to mediate conscious vision. More surprisingly, visually driven activity in corresponding regions of V1 and early extrastriate areas including hV5/MT+ did not guarantee visual perception in the group of patients with post-geniculate lesions that we examined. This suggests that the fine coordination of visual activity patterns across visual areas may be an important determinant of whether visual perception persists following visual cortical lesions. Copyright © 2018 Elsevier Inc. All rights reserved.

mtDNA and the Origin of the Icelanders: Deciphering Signals of Recent Population History

PubMed Central

Helgason, Agnar; Sigurðardóttir, Sigrún; Gulcher, Jeffrey R.; Ward, Ryk; Stefánsson, Kári

2000-01-01

Previous attempts to investigate the origin of the Icelanders have provided estimates of ancestry ranging from a 98% British Isles contribution to an 86% Scandinavian contribution. We generated mitochondrial sequence data for 401 Icelandic individuals and compared these data with >2,500 other European sequences from published sources, to determine the probable origins of women who contributed to Iceland’s settlement. Although the mean number of base-pair differences is high in the Icelandic sequences and they are widely distributed in the overall European mtDNA phylogeny, we find a smaller number of distinct mitochondrial lineages, compared with most other European populations. The frequencies of a number of mtDNA lineages in the Icelanders deviate noticeably from those in neighboring populations, suggesting that founder effects and genetic drift may have had a considerable influence on the Icelandic gene pool. This is in accordance with available demographic evidence about Icelandic population history. A comparison with published mtDNA lineages from European populations indicates that, whereas most founding females probably originated from Scandinavia and the British Isles, lesser contributions from other populations may also have taken place. We present a highly resolved phylogenetic network for the Icelandic data, identifying a number of previously unreported mtDNA lineage clusters and providing a detailed depiction of the evolutionary relationships between European mtDNA clusters. Our findings indicate that European populations contain a large number of closely related mitochondrial lineages, many of which have not yet been sampled in the current comparative data set. Consequently, substantial increases in sample sizes that use mtDNA data will be needed to obtain valid estimates of the diverse ancestral mixtures that ultimately gave rise to contemporary populations. PMID:10712214

Molecular and pharmacological evidence for MT1 melatonin receptor subtype in the tail artery of juvenile Wistar rats

PubMed Central

Ting, K N; Blaylock, N A; Sugden, D; Delagrange, P; Scalbert, E; Wilson, V G

1999-01-01

In this study reverse transcriptase-polymerase chain reaction (RT–PCR) has been used to identify mt1 and MT2 receptor mRNA expression in the rat tail artery. The contributions of both receptors to the functional response to melatonin were examined with the putative selective MT2 receptor antagonists, 4-phenyl-2-propionamidotetraline (4-P-PDOT) and 2-benzyl-N-pentanoyltryptamine. In addition, the action of melatonin on the second messenger cyclic AMP was investigated.Using RT–PCR, mt1 receptor mRNA was detected in the tail artery from seven rats. In contrast MT2 receptor mRNA was not detected even after nested PCR.At low concentrations of the MT2 selective ligands, neither 10 nM 4-P-PDOT (pEC50=8.70±0.31 (control) vs 8.73±0.16, n=6) nor 60 nM 2-benzyl-N-pentanoyltryptamine (pEC50=8.53±0.20 (control) vs 8.83±0.38, n=6) significantly altered the potency of melatonin in the rat tail artery.At concentrations non-selective for mt1 and MT2 receptors, 4-P-PDOT (3 μM) and 2-benzyl-N-pentanoyltryptamine (5 μM) caused a significant rightward displacement of the vasoconstrictor effect of melatonin. In the case of 4-P-PDOT, the estimated pKB (6.17±0.16, n=8) is similar to the binding affinity for mt1 receptor.Pre-incubation with 1 μM melatonin did not affect the conversion of [3H]-adenine to [3H]-cyclic AMP under basal condition (0.95±0.19% conversion (control) vs 0.92±0.19%, n=4) or following exposure to 30 μM forskolin (5.20±1.30% conversion (control) vs 5.35±0.90%, n=4).Based on the above findings, we conclude that melatonin receptor on the tail artery belongs to the MT1 receptor subtype, and that this receptor is probably independent of the adenylyl cyclase pathway. PMID:10433507

Winter water relations at the upper elevational limits of hemlock on Mt. Ascutney, Vermont

Treesearch

Chandra B. Vostral; Richard L. Boyce

2000-01-01

Winter water relations have been monitored in hemlock (Tsuga canadensis (L.) Carr.) at their upper elevational limits for three winters, 1997, 1998, and 1999, on Mt. Ascutney, Vermont. Hemlock and white pine trees (Pinus strobus L.) reach their elevational limit on Mt. Ascutney at 640 m (2100?), while the summit has an elevation of...

[Genetic ecological monitoring in human populations: heterozygosity, mtDNA haplotype variation, and genetic load].

PubMed

Balanovskiĭ, O P; Koshel', S M; Zaporozhchenko, V V; Pshenichnov, A S; Frolova, S A; Kuznetsova, M A; Baranova, E E; Teuchezh, I E; Kuznetsova, A A; Romashkina, M V; Utevskaia, O M; Churnosov, M I; Villems, R; Balanovskaia, E V

2011-11-01

Yu. P. Altukhov suggested that heterozygosity is an indicator of the state of the gene pool. The idea and a linked concept of genetic ecological monitoring were applied to a new dataset on mtDNA variation in East European ethnic groups. Haplotype diversity (an analog of the average heterozygosity) was shown to gradually decrease northwards. Since a similar trend is known for population density, interlinked changes were assumed for a set of parameters, which were ordered to form a causative chain: latitude increases, land productivity decreases, population density decreases, effective population size decreases, isolation of subpopulations increases, genetic drift increases, and mtDNA haplotype diversity decreases. An increase in genetic drift increases the random inbreeding rate and, consequently, the genetic load. This was confirmed by a significant correlation observed between the incidence of autosomal recessive hereditary diseases and mtDNA haplotype diversity. Based on the findings, mtDNA was assumed to provide an informative genetic system for genetic ecological monitoring; e.g., analyzing the ecology-driven changes in the gene pool.

The origin of Chinese domestic horses revealed with novel mtDNA variants.

PubMed

Yang, Yunzhou; Zhu, Qiyun; Liu, Shuqin; Zhao, Chunjiang; Wu, Changxin

2017-01-01

The origin of domestic horses in China was a controversial issue and several hypotheses including autochthonous domestication, introduction from other areas, and multiple-origins from both introduction and local wild horse introgression have been proposed, but none of them have been fully supported by DNA data. In the present study, mitochondrial DNA (mtDNA) sequences of 714 Chinese indigenous horses were analyzed. The results showed that Chinese domestic horses harbor some novel mtDNA haplogroups and suggested that local domestication events may have occurred, but they are not the dominant haplogroups and the geographical distributions of the novel mtDNA haplogroups were rather restricted. Conclusively, our results support the hypothesis that the domestic horses in China originated from both the introduced horses from outside of China and the local wild horses' introgression into the domestic populations. Results of genetic diversity analysis suggested a possibility that the introduced horses entered China through northern regions from the Eurasian steppe. © 2016 Japanese Society of Animal Science.

The iron chelator Dp44mT suppresses osteosarcoma’s proliferation, invasion and migration: in vitro and in vivo

PubMed Central

Li, Pengcheng; Zheng, Xun; Shou, Kangquan; Niu, Yahui; Jian, Chao; Zhao, Yong; Yi, Wanrong; Hu, Xiang; Yu, Aixi

2016-01-01

Di-2-pyridylketone-4,4-dimethyl-3-thiosemicarbazone (Dp44mT), the novel iron chelator, has been reported to inhibit the tumorigenesis and progression of various cancer cells, including neuroblastoma, neuroepithelioma and prostate cancer. However, whether Dp44mT has anticancer effects in osteosarcoma is still unknown. Here, we investigated the antitumor action of Dp44mT in osteosarcoma and its underlying mechanisms. A human osteosarcoma 143B cell line in vitro and 143B xenograft in nude mice in vivo were utilized, the anticancer effects of Dp44mT were examined through methods of MTT assay, transwell, wound healing assay, flow cytometry, western blot, immunohistochemistry and H&E staining. We showed that Dp44mT inhibits cell proliferation, invasion and migration in vitro. In addition, flow cytometry further illustrated that Dp44mT suppression of 143B cell proliferation, invasion and migration were partially due to induction of cell apoptosis, cell cycle arrest in S phase and ROS production. Also in vitro and in vivo, the expression levels of Bcl2, Bax, Caspase3, Caspase9, LC3-II, β-catenin and its downstream targets such as C-myc and Cyclin D1 demonstrated that cell apoptosis and autophagy, as well as Wnt/β-catenin pathway were involved in Dp44mT induced osteosarcoma suppression. The Dp44mT inhibition of osteosarcoma was further verified via animal models. The findings indicated that in vivo Dp44mT showed a significant reduction in the 143B xenograft tumor growth and metastasis. In conclusion, our data demonstrated that Dp44mT has effective anticancer capability in osteosarcoma and that may represent a promising treatment strategy for osteosarcoma. PMID:28078009

Leptin-mediated regulation of MT1-MMP localization is KIF1B dependent and enhances gastric cancer cell invasion.

PubMed

Dong, Zhaogang; Xu, Xiaofei; Du, Lutao; Yang, Yongmei; Cheng, Huanhuan; Zhang, Xin; Li, Zewu; Wang, Lili; Li, Juan; Liu, Hui; Qu, Xun; Wang, Chuanxin

2013-05-01

Leptin overexpression is closely correlated with gastric cancer (GC) invasion, but its exact effect and the underlying mechanism in tumorigenesis remain poorly understood. Membrane type 1-matrix metalloproteinase (MT1-MMP), a surface-anchored 'master switch' proteinase, is overexpressed and plays crucial roles in tumor invasion. Here, we characterized the influence of leptin on the generation and surface localization of MT1-MMP in GC and elucidated its molecular mechanisms. Our results revealed that leptin promoted GC cell invasion in vitro by upregulating MT1-MMP expression. Furthermore, cell surface biotinylation assay and flow cytometry demonstrated that the surface expression of MT1-MMP was also enhanced by leptin, and knockdown of kinesin family member 1B (KIF1B, a microtubule plus end-directed monomeric motor protein) by small interference RNA inhibited this process. Notably, coimmunoprecipitation analysis indicated that leptin enhanced the interaction of MT1-MMP with KIF1B in a time-dependent manner, which consequently contributed to GC cell invasion. Moreover, leptin increased MT1-MMP or KIF1B expression by the protein kinase B (AKT) pathway and extracellular signal-regulated kinase 1/2 partially participated in this process. However, only AKT was implicated in the leptin-mediated membrane localization of MT1-MMP. Immunohistochemistry analysis revealed that leptin, MT1-MMP and KIF1B are overexpressed in GC tissues, and they positively correlated with clinical stage and lymph node metastasis. These observations indicate that this regulatory network exists in vivo. Taken together, our findings suggest that leptin is an effective intracellular stimulator of MT1-MMP and that leptin-enhanced cell surface localization of MT1-MMP is dependent on KIF1B, which consequently plays a critical role in GC invasion.

Conflicting Values: Spirituality and Wilderness at Mt. Shasta

Treesearch

Maria Fernandez-Gimenez; Lynn Huntsinger; Catherine Phillips; Barbara Allen-Diaz

1992-01-01

Many people from a variety of backgrounds believe that Mt. Shasta is a major spiritual center. Although these "spiritual users" value the area's natural features, their spiritual and social activities, including construction of sweat lodges, medicine wheels, altars, meditation pads, trails, and campsites, are leading to rapid ecological degradation. This...

Human iPSC-Derived Neural Progenitors Are an Effective Drug Discovery Model for Neurological mtDNA Disorders.

PubMed

Lorenz, Carmen; Lesimple, Pierre; Bukowiecki, Raul; Zink, Annika; Inak, Gizem; Mlody, Barbara; Singh, Manvendra; Semtner, Marcus; Mah, Nancy; Auré, Karine; Leong, Megan; Zabiegalov, Oleksandr; Lyras, Ekaterini-Maria; Pfiffer, Vanessa; Fauler, Beatrix; Eichhorst, Jenny; Wiesner, Burkhard; Huebner, Norbert; Priller, Josef; Mielke, Thorsten; Meierhofer, David; Izsvák, Zsuzsanna; Meier, Jochen C; Bouillaud, Frédéric; Adjaye, James; Schuelke, Markus; Wanker, Erich E; Lombès, Anne; Prigione, Alessandro

2017-05-04

Mitochondrial DNA (mtDNA) mutations frequently cause neurological diseases. Modeling of these defects has been difficult because of the challenges associated with engineering mtDNA. We show here that neural progenitor cells (NPCs) derived from human induced pluripotent stem cells (iPSCs) retain the parental mtDNA profile and exhibit a metabolic switch toward oxidative phosphorylation. NPCs derived in this way from patients carrying a deleterious homoplasmic mutation in the mitochondrial gene MT-ATP6 (m.9185T>C) showed defective ATP production and abnormally high mitochondrial membrane potential (MMP), plus altered calcium homeostasis, which represents a potential cause of neural impairment. High-content screening of FDA-approved drugs using the MMP phenotype highlighted avanafil, which we found was able to partially rescue the calcium defect in patient NPCs and differentiated neurons. Overall, our results show that iPSC-derived NPCs provide an effective model for drug screening to target mtDNA disorders that affect the nervous system. Copyright © 2016 Elsevier Inc. All rights reserved.

Melatonin Synergizes the Chemotherapeutic Effect of Cisplatin in Ovarian Cancer Cells Independently of MT1 Melatonin Receptors.

PubMed

Zemła, Agata; Grzegorek, Irmina; Dzięgiel, Piotr; Jabłońska, Karolina

2017-01-01

Melatonin (MLT), through the interaction with membrane melatonin receptors MT1, can improve the effectiveness of cytostatic agents, including cisplatin (CP). The aim of this study was to examine the synergistic effect of MLT and CP in three cell lines: IOSE 364, SK-OV-3 and OVCAR-3, as well as to assess the role of MT1 receptors in this mechanism. Using the SRB assay we investigated the effect of different concentrations of CP and MLT on cell viability. Tests, using luzindole - MT1 inhibitor, allowed us to assess the potential involvement of MT1 in the mechanism of MLT action. MLT at certain concentrations demonstrated a synergistic effect in combination with CP. The addition of luzindole did not affect the action of MLT in combination with CP. In summary, the synergistic effect of MLT with CP seems to be independent of membrane MT1 receptors. Copyright© 2017, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

Mt. Vesuvius, Italy

NASA Technical Reports Server (NTRS)

2001-01-01

This ASTER image of Mt. Vesuvius Italy was acquired September 26, 2000, and covers an area of 36 by 45 km. Vesuvius overlooks the city of Naples and the Bay of Naples in central Italy. In 79 AD, Vesuvius erupted cataclysmically, burying all of the surrounding cites with up to 30 m of ash. The towns of Pompeii and Herculanaeum were rediscovered in the 18th century, and excavated in the 20th century. They provide a snapshot of Roman life from 2000 years ago: perfectly preserved are wooden objects, food items, and the casts of hundreds of victims. Vesuvius is intensively monitored for potential signs of unrest that could signal the beginning of another eruption. The image is centered at 40.8 degrees north latitude, 14.4 degrees east longitude.

The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

MitoTALEN: A General Approach to Reduce Mutant mtDNA Loads and Restore Oxidative Phosphorylation Function in Mitochondrial Diseases

PubMed Central

Hashimoto, Masami; Bacman, Sandra R; Peralta, Susana; Falk, Marni J; Chomyn, Anne; Chan, David C; Williams, Sion L; Moraes, Carlos T

2015-01-01

We have designed mitochondrially targeted transcription activator-like effector nucleases or mitoTALENs to cleave specific sequences in the mitochondrial DNA (mtDNA) with the goal of eliminating mtDNA carrying pathogenic point mutations. To test the generality of the approach, we designed mitoTALENs to target two relatively common pathogenic mtDNA point mutations associated with mitochondrial diseases: the m.8344A>G tRNALys gene mutation associated with myoclonic epilepsy with ragged red fibers (MERRF) and the m.13513G>A ND5 mutation associated with MELAS/Leigh syndrome. Transmitochondrial cybrid cells harbouring the respective heteroplasmic mtDNA mutations were transfected with the respective mitoTALEN and analyzed after different time periods. MitoTALENs efficiently reduced the levels of the targeted pathogenic mtDNAs in the respective cell lines. Functional assays showed that cells with heteroplasmic mutant mtDNA were able to recover respiratory capacity and oxidative phosphorylation enzymes activity after transfection with the mitoTALEN. To improve the design in the context of the low complexity of mtDNA, we designed shorter versions of the mitoTALEN specific for the MERRF m.8344A>G mutation. These shorter mitoTALENs also eliminated the mutant mtDNA. These reductions in size will improve our ability to package these large sequences into viral vectors, bringing the use of these genetic tools closer to clinical trials. PMID:26159306

Messenger RNA for membrane-type 2 matrix metalloproteinase, MT2-MMP, is expressed in human placenta of first trimester.

PubMed

Bjørn, S F; Hastrup, N; Larsen, J F; Lund, L R; Pyke, C

2000-01-01

An intimately regulated cell surface activation of matrix metalloproteinases (MMPs) is believed to be of critical importance for the control of trophoblast invasion. A histological investigation of the expression and localization of three different MMPs, the membrane-type matrix metalloproteinases 1 and 2 (MT1-MMP, MT2-MMP) and matrix metalloproteinase 2 (MMP-2/gelatinase A) was performed by in situ hybridization on consecutive sections from human placentae of first trimester pregnancies. Cytokeratin immunostaining identified trophoblast cells. Both normal and tubal implantation sites were studied. We observed a high degree of coexpression of MT2-MMP, MT1-MMP and MMP-2 mRNAs in single extravillous cytotrophoblasts that had invaded the endometrium and tubal wall. Furthermore, mRNAs for all three genes were also seen in cytotrophoblasts of cell islands. In contrast to this coexpression pattern, MT2-MMP expression was absent from cell columns and decidual cells, in which signals for MT1-MMP and MMP-2 mRNAs were seen. The present data on the cellular expression of MT2-MMP mRNA in placenta extend our knowledge of the proteolytic events that take place during early pregnancy. The data suggest that MT2-MMP, capable of activating MMP-2 in vitro, is involved in the invasion of extravillous cytotrophoblast, possibly related to the physiological activation of MMP-2. Copyright 2000 Harcourt Publishers Ltd.

The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?

PubMed

Smith, David Roy

2016-01-01

The year 2014 saw more than a thousand new mitochondrial genome sequences deposited in GenBank-an almost 15% increase from the previous year. Hundreds of peer-reviewed articles accompanied these genomes, making mitochondrial DNAs (mtDNAs) the most sequenced and reported type of eukaryotic chromosome. These mtDNA data have advanced a wide range of scientific fields, from forensics to anthropology to medicine to molecular evolution. But for many biological lineages, mtDNAs are so well sampled that newly published genomes are arguably no longer contributing significantly to the progression of science, and in some cases they are tying up valuable resources, particularly journal editors and referees. Is it time to acknowledge that as a research community we have published enough mitochondrial genome papers? Here, I address this question, exploring the history, milestones and impacts of mitochondrial genomics, the benefits and drawbacks of continuing to publish mtDNAs at a high rate and what the future may hold for such an important and popular genetic marker. I highlight groups for which mtDNAs are still poorly sampled, thus meriting further investigation, and recommend that more energy be spent characterizing aspects of mitochondrial genomes apart from the DNA sequence, such as their chromosomal and transcriptional architectures. Ultimately, one should be mindful before writing a mitochondrial genome paper. Consider perhaps sending the sequence directly to GenBank instead, and be sure to annotate it correctly before submission. © The Author 2015. Published by Oxford University Press.

Polynesian genetic affinities with Southeast Asian populations as identified by mtDNA analysis.

PubMed Central

Melton, T; Peterson, R; Redd, A J; Saha, N; Sofro, A S; Martinson, J; Stoneking, M

1995-01-01

Polynesian genetic affinities to populations of Asia were studied using mtDNA markers. A total of 1,037 individuals from 12 populations were screened for a 9-bp deletion in the intergenic region between the COII and tRNA(Lys) genes that approaches fixation in Polynesians. Sequence-specific oligonucleotide probes that identify specific mtDNA control region nucleotide substitutions were used to describe variation in individuals with the 9-bp deletion. The 9-bp deletion was not observed in northern Indians, Bangladeshis, or Pakistanis but was seen at low to moderate frequencies in the nine other Southeast Asian populations. Three substitutions in the control region at positions 16217, 16247, and 16261 have previously been observed at high frequency in Polynesian mtDNAs; this "Polynesian motif" was observed in 20% of east Indonesians with the 9-bp deletion but was observed in only one additional individual. mtDNA types related to the Polynesian motif are highest in frequency in the corridor from Taiwan south through the Philippines and east Indonesia, and the highest diversity for these types is in Taiwan. These results are consistent with linguistic evidence of a Taiwanese origin for the proto-Polynesian expansion, which spread throughout Oceania by way of Indonesia. PMID:7668267

Coexistence of minicircular and a highly rearranged mtDNA molecule suggests that recombination shapes mitochondrial genome organization.

PubMed

Mao, Meng; Austin, Andrew D; Johnson, Norman F; Dowton, Mark

2014-03-01

Recombination has been proposed as a possible mechanism to explain mitochondrial (mt) gene rearrangements, although the issue of whether mtDNA recombination occurs in animals has been controversial. In this study, we sequenced the entire mt genome of the megaspilid wasp Conostigmus sp., which possessed a highly rearranged mt genome. The sequence of the A+T-rich region contained a number of different types of repeats, similar to those reported previously in the nematode Meloidogyne javanica, in which recombination was discovered. In Conostigmus, we detected the end products of recombination: a range of minicircles. However, using isolated (cloned) fragments of the A+T-rich region, we established that some of these minicircles were found to be polymerase chain reaction (PCR) artifacts. It appears that regions with repeats are prone to PCR template switching or PCR jumping. Nevertheless, there is strong evidence that one minicircle is real, as amplification primers that straddle the putative breakpoint junction produce a single strong amplicon from genomic DNA but not from the cloned A+T-rich region. The results provide support for the direct link between recombination and mt gene rearrangement. Furthermore, we developed a model of recombination which is important for our understanding of mtDNA evolution.

The 2001 Mt. Etna eruption: new constraints on the intrusive mechanism from ground deformation data

NASA Astrophysics Data System (ADS)

Palano, Mimmo; González, Pablo J.

2013-04-01

The occurrence of seismic swarms beneath the SW flank of Mt. Etna, often observed just a few months before an eruption, has been considered as the fragile response to a magma intrusion (Bonanno et al., 2011 and reference therein). These intrusions and/or pressurization of deep magmatic bodies, have been able to significantly affect the seismic pattern within the volcano edifice, leading to a changes in the local stress field. For example, during the months preceding the 1991-1993 Mt. Etna eruption, shallow intense seismic swarms (4-6 km deep) occurring in the SW flank (e.g. Cocina et al., 1998), related to the magma intrusion before the eruption onset, were observed contemporaneously with a rotation of stress field of about 90°. A similar scenario was observed during January 1998, when a magma recharging phases induced a local rotation of stress tensor, forcing a buried fault zone located beneath the SW flank of Mt. Etna to slip as a right-lateral strike-slip fault (Bonanno et al., 2011). This fault system was forced to slip again, during late April 2001 (more than 200 events in less than 5 days; maximum Magnitude = 3.6) by the pressurization of the magmatic bodies feeding the July-August 2001 Mt. Etna eruption. Here we analyzed in detail the July-August 2001 Mt. Etna eruption as well as the dynamics preceding this event, by using a large dataset of geodetic data (GPS and synthetic aperture radar interferometry) collected between July 2000 and August 2001. References Cocina, O., Neri, G., Privitera, E. and Spampinato S., 1998. Seismogenic stress field beneath Mt. Etna South Italy and possible relationships with volcano-tectonic features. J. Volcanol. Geotherm. Res., 83, 335-348. Bonanno A., Palano M., Privitera E., Gresta S., Puglisi G., 2011. Magma intrusion mechanisms and redistribution of seismogenic stress at Mt. Etna volcano (1997-1998). Terra Nova, 23, 339-348, doi: 10.1111/j.1365-3121.2011.01019.x, 2011.

Individual Differences in the Alignment of Structural and Functional Markers of the V5/MT Complex in Primates

PubMed Central

Large, I.; Bridge, H.; Ahmed, B.; Clare, S.; Kolasinski, J.; Lam, W. W.; Miller, K. L.; Dyrby, T. B.; Parker, A. J.; Smith, J. E. T.; Daubney, G.; Sallet, J.; Bell, A. H.; Krug, K.

2016-01-01

Extrastriate visual area V5/MT in primates is defined both structurally by myeloarchitecture and functionally by distinct responses to visual motion. Myelination is directly identifiable from postmortem histology but also indirectly by image contrast with structural magnetic resonance imaging (sMRI). First, we compared the identification of V5/MT using both sMRI and histology in Rhesus macaques. A section-by-section comparison of histological slices with in vivo and postmortem sMRI for the same block of cortical tissue showed precise correspondence in localizing heavy myelination for V5/MT and neighboring MST. Thus, sMRI in macaques accurately locates histologically defined myelin within areas known to be motion selective. Second, we investigated the functionally homologous human motion complex (hMT+) using high-resolution in vivo imaging. Humans showed considerable intersubject variability in hMT+ location, when defined with myelin-weighted sMRI signals to reveal structure. When comparing sMRI markers to functional MRI in response to moving stimuli, a region of high myelin signal was generally located within the hMT+ complex. However, there were considerable differences in the alignment of structural and functional markers between individuals. Our results suggest that variation in area identification for hMT+ based on structural and functional markers reflects individual differences in human regional brain architecture. PMID:27371764

3-D Inversion of the MT EarthScope Data, Collected Over the East Central United States

NASA Astrophysics Data System (ADS)

Gribenko, A. V.; Zhdanov, M. S.

2017-12-01

The magnetotelluric (MT) data collected as a part of the EarthScope project provided a unique opportunity to study the conductivity structure of the deep interior of the North American continent. Besides the scientific value of the recovered subsurface models, the data also allowed inversion practitioners to test the robustness of their algorithms applied to regional long-period data. In this paper, we present the results of MT inversion of a subset of the second footprint of the MT data collection covering the East Central United States. Our inversion algorithm implements simultaneous inversion of the full MT impedance data both for the 3-D conductivity distribution and for the distortion matrix. The distortion matrix provides the means to account for the effect of the near-surface geoelectrical inhomogeneities on the MT data. The long-period data do not have the resolution for the small near-surface conductivity anomalies, which makes an application of the distortion matrix especially appropriate. The determined conductivity model of the region agrees well with the known geologic and tectonic features of the East Central United States. The conductivity anomalies recovered by our inversion indicate a possible presence of the hot spot track in the area.

76 FR 35967 - Amendment of Class E Airspace; Bozeman, MT

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-21

..., Gallatin Field Airport, Bozeman, MT, to accommodate aircraft using Instrument Landing System (ILS... 6005 Class E airspace areas extending upward from 700 feet or more above the surface of the earth...

MT4-MMP and EGFR expression levels are key biomarkers for breast cancer patient response to chemotherapy and erlotinib

PubMed Central

Yip, Cassandre; Foidart, Pierre; Somja, Joan; Truong, Alice; Lienard, Mehdi; Feyereisen, Emilie; Schroeder, Hélène; Gofflot, Stéphanie; Donneau, Anne-Françoise; Collignon, Joëlle; Delvenne, Philippe; Sounni, Nor Eddine; Jerusalem, Guy; Noël, Agnès

2017-01-01

Background: Triple-negative breast cancers (TNBC) are heterogeneous cancers with poor prognosis. We aimed to determine the clinical relevance of membrane type-4 matrix metalloproteinase (MT4-MMP), a membrane type matrix metalloproteinase that interacts with epidermal growth factor receptor (EGFR) overexpressed in >50% of TNBC. Methods: We conducted a retrospective immunohistochemical analysis on human TNBC samples (n=81) and validated our findings in in vitro and in vivo assays. Results: Membrane type-4 matrix metalloproteinase and EGFR are produced in 72.5% of TNBC samples, whereas those proteins are faintly produced by healthy tissues. Unexpectedly, tumour relapse after chemotherapy was reduced in samples highly positive for MT4-MMP. Mechanistically, this is ascribed to a higher sensitivity of MT4-MMP-producing cells to alkylating or intercalating chemotherapeutic agents, as assessed in vitro. In sharp contrast, MT4-MMP expression did not affect tumour cell sensitivity to paclitaxel that interferes with protease trafficking. Importantly, MT4-MMP expression sensitised cancer cells to erlotinib, a tyrosine kinase EGFR inhibitor. In a pre-clinical model, the growth of MT4-MMP overexpressing xenografts, but not of control ones, was reduced by epirubicin or erlotinib. The combination of suboptimal drug doses blocked drastically the growth of MT4-MMP-producing tumours. Conclusions: We demonstrate that MT4-MMP defines a sub-population of TNBC sensitive to a combination of DNA-targeting chemotherapeutic agents and anti-EGFR drugs. PMID:28196064

Superpartner mass measurement technique using 1D orthogonal decompositions of the Cambridge transverse mass variable M(T2).

PubMed

Konar, Partha; Kong, Kyoungchul; Matchev, Konstantin T; Park, Myeonghun

2010-07-30

We propose a new model-independent technique for mass measurements in missing energy events at hadron colliders. We illustrate our method with the most challenging case of a single-step decay chain. We consider inclusive same-sign chargino pair production in supersymmetry, followed by leptonic decays to sneutrinos χ+ χ+ → ℓ+ ℓ'+ ν(ℓ)ν(ℓ') and invisible decays ν(ℓ) → ν(ℓ) χ(1)(0). We introduce two one-dimensional decompositions of the Cambridge MT2 variable: M(T2∥) and M(T2⊥), on the direction of the upstream transverse momentum P→T and the direction orthogonal to it, respectively. We show that the sneutrino mass Mc can be measured directly by minimizing the number of events N(Mc) in which MT2 exceeds a certain threshold, conveniently measured from the end point M(T2⊥)(max) (Mc).

The rapid detection of methyl tert-butyl ether (MtBE) in water using a prototype gas sensor system.

PubMed

de Lacy Costello, B P J; Sivanand, P S; Ratcliffe, N M; Reynolds, D M

2005-01-01

The gasoline additive Methyl-tertiary-Butyl Ether (MtBE) is the second most common contaminant of groundwater in the USA and represents an important soil contaminant. This compound has been detected in the groundwater in at least 27 states as a result of leaking underground storage facilities (gasoline storage tanks and pipelines). Since the health effects of MtBE are unclear the potential threat to drinking water supplies is serious. Therefore, the ability to detect MtBE at low levels (ppb) and on-line at high-risk groundwater sites would be highly desirable. This paper reports the use of 'commercial' and metal oxide sensor arrays for the detection of MtBE in drinking and surface waters at low ppb level (microg.L(-1) range). The output responses from some of the sensors were found to correlate well with MtBE concentrations under laboratory conditions.

Global microphysical simulation of stratospheric sulfate aerosol after the Mt. Pinatubo eruption

NASA Astrophysics Data System (ADS)

Sekiya, T.; Sudo, K.

2014-12-01

An explosive volcanic eruption can inject a large amount of SO2 into the stratosphere, which is oxidized to form sulfate aerosol. Such aerosol has an impact on the Earth's radiative budget by enhancing back-scattering of the solar radiation. Changes in the size distribution of the aerosol were observed after large volcanic eruptions. Representing the changes in size distribution is important for climate simulation, because the changes affect climate responses to large volcanic eruptions. This study newly developed an aerosol microphysics module and investigated changes in stratospheric sulfate aerosol after the Mt. Pinatubo eruption in the framework of a chemistry-aerosol coupled climate model MIROC-CHASER/SPRINTARS. The module represents aerosol size distribution with three lognormal modes (nucleation, Aitken, and accumulation modes) and includes nucleation, condensation growth/evaporation, and coagulation processes. As a model evaluation, we tested reproducibility of the impacts of the Mt. Pinatubo eruption. We carried out a simulation, in which 20 Mt of SO2 and 100 Mt of volcanic ash were injected respectively into 25 km and 16—22 km altitudes over Mt. Pinatubo (120.4°E, 15.1°N) on June 15th 1991. We compared the model results with space-borne and balloon-borne observations. Although our model overestimated a near-global mean (60°N—60°S) of stratospheric aerosol optical depth (SAOD) observed by SAGE II instrument until one year after the eruption, it reproduced the observed SAOD in the subsequent period. The model well captured the observed increase of effective radius at 20 km altitude in the northern midlatitudes. In addition, we analyzed the pathway of volcanic sulfur from SO2 to sulfate aerosol. The most amount of the volcanic sulfur was converted from SO2 to accumulation mode aerosol by 100 days after the eruption. The conversion into the accumulation mode aerosol is attributable to coagulation until the first 14 days and to condensation growth

Preliminary interpretation of high resolution 3D seismic data from offshore Mt. Etna, Italy

NASA Astrophysics Data System (ADS)

Gross, F.; Krastel, S.; Chiocci, F. L.; Ridente, D.; Cukur, D.; Bialas, J.; Papenberg, C. A.; Crutchley, G.; Koch, S.

2013-12-01

In order to gain knowledge about subsurface structures and its correlation to seafloor expressions, a hydro-acoustic dataset was collected during RV Meteor Cruise M86/2 (December 2011/January 2012) in Messina Straits and offshore Mt. Etna. Especially offshore Mt. Etna, the data reveals an obvious connection between subsurface structures and previously known morphological features at the sea floor. Therefore a high resolution 3D seismic dataset was acquired between Riposto Ridge and Catania Canyon close to the shore of eastern Sicily. The study area is characterized by a major structural high, which hosts several ridge-like features at the seafloor. These features are connected to a SW-NE trending fault system. The ridges are bended in their NE-SW direction and host major escarpments at the seafloor. Furthermore they are located directly next to a massive amphitheater structure offshore Mt. Etna with slope gradients of up to 35°, which is interpreted as remnants of a massive submarine mass wasting event off Sicily. The new 3D seismic dataset allows an in depth analysis of the ongoing deformation of the east flank of Mt. Etna.

The GHEP–EMPOP collaboration on mtDNA population data—A new resource for forensic casework

PubMed Central

Prieto, L.; Zimmermann, B.; Goios, A.; Rodriguez-Monge, A.; Paneto, G.G.; Alves, C.; Alonso, A.; Fridman, C.; Cardoso, S.; Lima, G.; Anjos, M.J.; Whittle, M.R.; Montesino, M.; Cicarelli, R.M.B.; Rocha, A.M.; Albarrán, C.; de Pancorbo, M.M.; Pinheiro, M.F.; Carvalho, M.; Sumita, D.R.; Parson, W.

2011-01-01

Mitochondrial DNA (mtDNA) population data for forensic purposes are still scarce for some populations, which may limit the evaluation of forensic evidence especially when the rarity of a haplotype needs to be determined in a database search. In order to improve the collection of mtDNA lineages from the Iberian and South American subcontinents, we here report the results of a collaborative study involving nine laboratories from the Spanish and Portuguese Speaking Working Group of the International Society for Forensic Genetics (GHEP-ISFG) and EMPOP. The individual laboratories contributed population data that were generated throughout the past 10 years, but in the majority of cases have not been made available to the scientific community. A total of 1019 haplotypes from Iberia (Basque Country, 2 general Spanish populations, 2 North and 1 Central Portugal populations), and Latin America (3 populations from São Paulo) were collected, reviewed and harmonized according to defined EMPOP criteria. The majority of data ambiguities that were found during the reviewing process (41 in total) were transcription errors confirming that the documentation process is still the most error-prone stage in reporting mtDNA population data, especially when performed manually. This GHEP–EMPOP collaboration has significantly improved the quality of the individual mtDNA datasets and adds mtDNA population data as valuable resource to the EMPOP database (www.empop.org). PMID:21075696

A goodness-of-fit test for capture-recapture model M(t) under closure

USGS Publications Warehouse

Stanley, T.R.; Burnham, K.P.

1999-01-01

A new, fully efficient goodness-of-fit test for the time-specific closed-population capture-recapture model M(t) is presented. This test is based on the residual distribution of the capture history data given the maximum likelihood parameter estimates under model M(t), is partitioned into informative components, and is based on chi-square statistics. Comparison of this test with Leslie's test (Leslie, 1958, Journal of Animal Ecology 27, 84- 86) for model M(t), using Monte Carlo simulations, shows the new test generally outperforms Leslie's test. The new test is frequently computable when Leslie's test is not, has Type I error rates that are closer to nominal error rates than Leslie's test, and is sensitive to behavioral variation and heterogeneity in capture probabilities. Leslie's test is not sensitive to behavioral variation in capture probabilities but, when computable, has greater power to detect heterogeneity than the new test.

Altering the Mitochondrial Fatty Acid Synthesis (mtFASII) Pathway Modulates Cellular Metabolic States and Bioactive Lipid Profiles as Revealed by Metabolomic Profiling

PubMed Central

Clay, Hayley B.; Parl, Angelika K.; Mitchell, Sabrina L.; Singh, Larry; Bell, Lauren N.; Murdock, Deborah G.

2016-01-01

Despite the presence of a cytosolic fatty acid synthesis pathway, mitochondria have retained their own means of creating fatty acids via the mitochondrial fatty acid synthesis (mtFASII) pathway. The reason for its conservation has not yet been elucidated. Therefore, to better understand the role of mtFASII in the cell, we used thin layer chromatography to characterize the contribution of the mtFASII pathway to the fatty acid composition of selected mitochondrial lipids. Next, we performed metabolomic analysis on HeLa cells in which the mtFASII pathway was either hypofunctional (through knockdown of mitochondrial acyl carrier protein, ACP) or hyperfunctional (through overexpression of mitochondrial enoyl-CoA reductase, MECR). Our results indicate that the mtFASII pathway contributes little to the fatty acid composition of mitochondrial lipid species examined. Additionally, loss of mtFASII function results in changes in biochemical pathways suggesting alterations in glucose utilization and redox state. Interestingly, levels of bioactive lipids, including lysophospholipids and sphingolipids, directly correlate with mtFASII function, indicating that mtFASII may be involved in the regulation of bioactive lipid levels. Regulation of bioactive lipid levels by mtFASII implicates the pathway as a mediator of intracellular signaling. PMID:26963735

High-altitude adaptation of Tibetan chicken from MT-COI and ATP-6 perspective.

PubMed

Zhao, Xiaoling; Wu, Nan; Zhu, Qing; Gaur, Uma; Gu, Ting; Li, Diyan

2016-09-01

The problem of hypoxia adaptation in high altitudes is an unsolved brainteaser in the field of life sciences. As one of the best chicken breeds with adaptability to highland environment, the Tibetan chicken, is genetically different from lowland chicken breeds. In order to gain a better understanding of the mechanism of hypoxic adaptability in high altitude, in the present study, we focused on the MT-COI together with ATP-6 gene to explore the regulatory mechanisms for hypoxia adaptability in Tibet chicken. Here, we sequenced MT-COI of 29 Tibetan chickens and 30 Chinese domestic chickens and ATP-6 gene of 28 Tibetan chickens and 29 Chinese domestic chickens. In MT-COI gene, 9 single nucleotide polymorphisms (SNPs) were detected though none of these was a missense mutation, confirming the fact that MT-COI gene is a largely conservative sequence. In ATP-6 gene, 6 single nucleotide polymorphisms (SNPs) were detected and we found a missense mutation (m.9441G > A) in the ATP-6 gene of Tibetan chicken resulting in an amino acid substitution. Due to the critical role of ATP-6 gene in the proton translocation and energy metabolism, we speculated the possibility of this mutation playing an important role in easier energy conversion and metabolism in Tibetan chickens than Chinese domestic chickens so as to better adapt to the harsh environment of the high-altitude areas. The Median-joining profile also suggested that haplotype Ha2 has the ancestral position to the other haplotypes and has significant relationship with high-altitude adaptation in ATP-6 gene. Therefore, we considered that the polymorphism (m.9441G > A) in the ATP-6 gene may affect the specific functions of ATP-6 enzyme relating to high-altitude adaptation of Tibetan chicken and MT-COI gene is a largely conservative sequence.

Mt. Etna, Sicily as seen from STS-62

NASA Image and Video Library

1994-03-05

STS062-85-195 (4-18 March 1994) --- A thin plume of steam blows southward from the summit of Mt. Etna, the active volcano on the island of Sicily. The summit is capped with snow but the dark lava flow along the eastern flank (the 1991-93 flow) is clearly visible. The coastal city south of Etna is Catania.

Targeted transgenic overexpression of mitochondrial thymidine kinase (TK2) alters mitochondrial DNA (mtDNA) and mitochondrial polypeptide abundance: transgenic TK2, mtDNA, and antiretrovirals.

PubMed

Hosseini, Seyed H; Kohler, James J; Haase, Chad P; Tioleco, Nina; Stuart, Tami; Keebaugh, Erin; Ludaway, Tomika; Russ, Rodney; Green, Elgin; Long, Robert; Wang, Liya; Eriksson, Staffan; Lewis, William

2007-03-01

Mitochondrial toxicity limits nucleoside reverse transcriptase inhibitors (NRTIs) for acquired immune deficiency syndrome. NRTI triphosphates, the active moieties, inhibit human immunodeficiency virus reverse transcriptase and eukaryotic mitochondrial DNA polymerase pol-gamma. NRTI phosphorylation seems to correlate with mitochondrial toxicity, but experimental evidence is lacking. Transgenic mice (TGs) with cardiac overexpression of thymidine kinase isoforms (mitochondrial TK2 and cytoplasmic TK1) were used to study NRTI mitochondrial toxicity. Echocardiography and nuclear magnetic resonance imaging defined cardiac performance and structure. TK gene copy and enzyme activity, mitochondrial (mt) DNA and polypeptide abundance, succinate dehydrogenase and cytochrome oxidase histochemistry, and electron microscopy correlated with transgenesis, mitochondrial structure, and biogenesis. Antiretroviral combinations simulated therapy. Untreated hTK1 or TK2 TGs exhibited normal left ventricle mass. In TK2 TGs, cardiac TK2 gene copy doubled, activity increased 300-fold, and mtDNA abundance doubled. Abundance of the 17-kd subunit of complex I, succinate dehydrogenase histochemical activity, and cristae density increased. NRTIs increased left ventricle mass 20% in TK2 TGs. TK activity increased 3 logs in hTK1 TGs, but no cardiac phenotype resulted. NRTIs abrogated functional effects of transgenically increased TK2 activity but had no effect on TK2 mtDNA abundance. Thus, NRTI mitochondrial phosphorylation by TK2 is integral to clinical NRTI mitochondrial toxicity.

Precise hypocenter locations of midcrustal low-frequency earthquakes beneath Mt. Fuji, Japan

USGS Publications Warehouse

Nakamichi, H.; Ukawa, M.; Sakai, S.

2004-01-01

Midcrustal low-frequency earthquakes (MLFs) have been observed at seismic stations around Mt. Fuji, Japan. In September - December 2000 and April - May 2001, abnormally high numbers of MLFs occurred. We located hypocenters for the 80 MLFs during 1998-2003 by using the hypoDD earthquake location program (Waldhauser and Ellsworth, 2000). The MLF hypocenters define an ellipsoidal volume some 5 km in diameter ranging from 11 to 16 km in focal depth. This volume is centered 3 km northeast of the summit and its long axis is directed NW-SE. The direction of the axis coincides with the major axis of tectonic compression around Mt. Fuji. The center of the MLF epicenters gradually migrated upward and 2-3 km from southeast to northwest during 1998-2001. We interpret that the hypocentral migration of MLFs reflects magma movement associated with a NW-SE oriented dike beneath Mt. Fuji. Copyright ?? The Society of Geomagnetism and Earth, Planetary and Space Sciences (SGEPSS); The Seismological Society of Japan; The Volcanological Society of Japan; The Geodetic Society of Japan; The Japanese Society for Planetary Sciences.

Therapeutic Targeting of the Mitochondria Initiates Excessive Superoxide Production and Mitochondrial Depolarization Causing Decreased mtDNA Integrity

PubMed Central

Pokrzywinski, Kaytee L.; Biel, Thomas G.; Kryndushkin, Dmitry; Rao, V. Ashutosh

2016-01-01

Mitochondrial dysregulation is closely associated with excessive reactive oxygen species (ROS) production. Altered redox homeostasis has been implicated in the onset of several diseases including cancer. Mitochondrial DNA (mtDNA) and proteins are particularly sensitive to ROS as they are in close proximity to the respiratory chain (RC). Mitoquinone (MitoQ), a mitochondria-targeted redox agent, selectively damages breast cancer cells possibly through damage induced via enhanced ROS production. However, the effects of MitoQ and other triphenylphosphonium (TPP+) conjugated agents on cancer mitochondrial homeostasis remain unknown. The primary objective of this study was to determine the impact of mitochondria-targeted agent [(MTAs) conjugated to TPP+: mitoTEMPOL, mitoquinone and mitochromanol-acetate] on mitochondrial physiology and mtDNA integrity in breast (MDA-MB-231) and lung (H23) cancer cells. The integrity of the mtDNA was assessed by quantifying the degree of mtDNA fragmentation and copy number, as well as by measuring mitochondrial proteins essential to mtDNA stability and maintenance (TFAM, SSBP1, TWINKLE, POLG and POLRMT). Mitochondrial status was evaluated by measuring superoxide production, mitochondrial membrane depolarization, oxygen consumption, extracellular acidification and mRNA or protein levels of the RC complexes along with TCA cycle activity. In this study, we demonstrated that all investigated MTAs impair mitochondrial health and decrease mtDNA integrity in MDA-MB-231 and H23 cells. However, differences in the degree of mitochondrial damage and mtDNA degradation suggest unique properties among each MTA that may be cell line, dose and time dependent. Collectively, our study indicates the potential for TPP+ conjugated molecules to impair breast and lung cancer cells by targeting mitochondrial homeostasis. PMID:28030582

Therapeutic Targeting of the Mitochondria Initiates Excessive Superoxide Production and Mitochondrial Depolarization Causing Decreased mtDNA Integrity.

PubMed

Pokrzywinski, Kaytee L; Biel, Thomas G; Kryndushkin, Dmitry; Rao, V Ashutosh

2016-01-01

Mitochondrial dysregulation is closely associated with excessive reactive oxygen species (ROS) production. Altered redox homeostasis has been implicated in the onset of several diseases including cancer. Mitochondrial DNA (mtDNA) and proteins are particularly sensitive to ROS as they are in close proximity to the respiratory chain (RC). Mitoquinone (MitoQ), a mitochondria-targeted redox agent, selectively damages breast cancer cells possibly through damage induced via enhanced ROS production. However, the effects of MitoQ and other triphenylphosphonium (TPP+) conjugated agents on cancer mitochondrial homeostasis remain unknown. The primary objective of this study was to determine the impact of mitochondria-targeted agent [(MTAs) conjugated to TPP+: mitoTEMPOL, mitoquinone and mitochromanol-acetate] on mitochondrial physiology and mtDNA integrity in breast (MDA-MB-231) and lung (H23) cancer cells. The integrity of the mtDNA was assessed by quantifying the degree of mtDNA fragmentation and copy number, as well as by measuring mitochondrial proteins essential to mtDNA stability and maintenance (TFAM, SSBP1, TWINKLE, POLG and POLRMT). Mitochondrial status was evaluated by measuring superoxide production, mitochondrial membrane depolarization, oxygen consumption, extracellular acidification and mRNA or protein levels of the RC complexes along with TCA cycle activity. In this study, we demonstrated that all investigated MTAs impair mitochondrial health and decrease mtDNA integrity in MDA-MB-231 and H23 cells. However, differences in the degree of mitochondrial damage and mtDNA degradation suggest unique properties among each MTA that may be cell line, dose and time dependent. Collectively, our study indicates the potential for TPP+ conjugated molecules to impair breast and lung cancer cells by targeting mitochondrial homeostasis.

MT119, a new planar-structured compound, targets the colchicine site of tubulin arresting mitosis and inhibiting tumor cell proliferation.

PubMed

Zhang, Zhixiang; Meng, Tao; Yang, Na; Wang, Wei; Xiong, Bing; Chen, Yi; Ma, Lanping; Shen, Jingkang; Miao, Ze-Hong; Ding, Jian

2011-07-01

Microtubule-targeted drugs are now indispensable for the therapy of various cancer types worldwide. In this article, we report MT119 [6-[2-(4-methoxyphenyl) -ethyl]-9-[(pyridine-3-ylmethyl)amino]pyrido[2',1':2,3]imida-zo[4,5-c]isoquinolin-5(6H)-one] as a new microtubule-targeted agent. MT119 inhibited tubulin polymerization significantly both in tumor cells and in cell-free systems, which was followed by the disruption of mitotic spindle assembly. Surface plasmon resonance-based analyses showed that MT119 bound to purified tubulin directly, with the K(D) value of 10.6 μM. The binding of MT119 in turn caused tubulin conformational changes as evidenced by the quenched tryptophan fluorescence, the reduction of the bis-ANS reactivity and the decreased DTNB-sulfhydryl reaction rate. Competitive binding assays further revealed that MT119 bound to tubulin at its colchicine site. Consequently, by inhibiting tubulin polymerization, MT119 arrested different tumor cells at mitotic phase, which contributed to its potent antitumor activity in vitro. MT119 was also similarly cytotoxic to vincristine-, adriamycin- or mitoxantrone-resistant cancer cells and to their corresponding parental cells. Together, these data indicate that MT119 represents a new class of colchicine-site-targeted inhibitors against tubulin polymerization, which might be a promising starting point for future cancer therapeutics. Copyright © 2010 UICC.

Endurance exercise rescues progeroid aging and induces systemic mitochondrial rejuvenation in mtDNA mutator mice

PubMed Central

Safdar, Adeel; Bourgeois, Jacqueline M.; Ogborn, Daniel I.; Little, Jonathan P.; Hettinga, Bart P.; Akhtar, Mahmood; Thompson, James E.; Melov, Simon; Mocellin, Nicholas J.; Kujoth, Gregory C.; Prolla, Tomas A.; Tarnopolsky, Mark A.

2011-01-01

A causal role for mitochondrial DNA (mtDNA) mutagenesis in mammalian aging is supported by recent studies demonstrating that the mtDNA mutator mouse, harboring a defect in the proofreading-exonuclease activity of mitochondrial polymerase gamma, exhibits accelerated aging phenotypes characteristic of human aging, systemic mitochondrial dysfunction, multisystem pathology, and reduced lifespan. Epidemiologic studies in humans have demonstrated that endurance training reduces the risk of chronic diseases and extends life expectancy. Whether endurance exercise can attenuate the cumulative systemic decline observed in aging remains elusive. Here we show that 5 mo of endurance exercise induced systemic mitochondrial biogenesis, prevented mtDNA depletion and mutations, increased mitochondrial oxidative capacity and respiratory chain assembly, restored mitochondrial morphology, and blunted pathological levels of apoptosis in multiple tissues of mtDNA mutator mice. These adaptations conferred complete phenotypic protection, reduced multisystem pathology, and prevented premature mortality in these mice. The systemic mitochondrial rejuvenation through endurance exercise promises to be an effective therapeutic approach to mitigating mitochondrial dysfunction in aging and related comorbidities. PMID:21368114

Dynamics of the functional link between area MT LFPs and motion detection

PubMed Central

Smith, Jackson E. T.; Beliveau, Vincent; Schoen, Alan; Remz, Jordana; Zhan, Chang'an A.

2015-01-01

The evolution of a visually guided perceptual decision results from multiple neural processes, and recent work suggests that signals with different neural origins are reflected in separate frequency bands of the cortical local field potential (LFP). Spike activity and LFPs in the middle temporal area (MT) have a functional link with the perception of motion stimuli (referred to as neural-behavioral correlation). To cast light on the different neural origins that underlie this functional link, we compared the temporal dynamics of the neural-behavioral correlations of MT spikes and LFPs. Wide-band activity was simultaneously recorded from two locations of MT from monkeys performing a threshold, two-stimuli, motion pulse detection task. Shortly after the motion pulse occurred, we found that high-gamma (100–200 Hz) LFPs had a fast, positive correlation with detection performance that was similar to that of the spike response. Beta (10–30 Hz) LFPs were negatively correlated with detection performance, but their dynamics were much slower, peaked late, and did not depend on stimulus configuration or reaction time. A late change in the correlation of all LFPs across the two recording electrodes suggests that a common input arrived at both MT locations prior to the behavioral response. Our results support a framework in which early high-gamma LFPs likely reflected fast, bottom-up, sensory processing that was causally linked to perception of the motion pulse. In comparison, late-arriving beta and high-gamma LFPs likely reflected slower, top-down, sources of neural-behavioral correlation that originated after the perception of the motion pulse. PMID:25948867

Postglacial volcanic deposits at Glacier Peak, Washington, and potential hazards from future eruptions; a preliminary report

USGS Publications Warehouse

Beget, J.E.

1982-01-01

Eruptions and other geologic events at Glacier Peak volcano in northern Washington have repeatedly affected areas near the volcano as well as areas far downwind and downstream. This report describes the evidence of this activity preserved in deposits on the west and east flanks of the volcano. On the west side of Glacier Peak the oldest postglacial deposit is a large, clayey mudflow which traveled at least 35 km down the White Chuck River valley sometime after 14,000 years ago. Subsequent large explosive eruptions produced lahars and at least 10 pyroclastic-flow deposits, including a semiwelded vitric tuff in the White Chuck River valley. These deposits, known collectively as the White Chuck assemblage, form a valley fill which is locally preserved as far as 100 km downstream from the volcano in the Stillaguamish River valley. At least some of the assemblage is about 11,670-11,500 radiocarbon years old. A small clayey lahar, containing reworked blocks of the vitric tuff, subsequently traveled at least 15 km down the White Chuck River. This lahar is overlain by lake sediments containing charred wood which is about 5,500 years old. A 150-m-thick assemblage of pyroclastic-flow deposits and lahars, called the Kennedy Creek assemblage, is in part about 5,500-5,100 radiocarbon years old. Lithic lahars from this assemblage extend at least 100 km downstream in the Skagit River drainage. The younger lahar assemblages, each containing at least three lahars and reaching at least 18 km downstream from Glacier Peak in the White Chuck River valley, are about 2,800 and 1,800 years old, respectively. These are postdated by a lahar containing abundant oxyhornblende dacite, which extends at least 30 km to the Sauk River. A still younger lahar assemblage that contains at least five lahars, and that also extends at least 30 km to the Sauk River, is older than a mature forest growing on its surface. At least one lahar and a flood deposit form a low terrace at the confluence of the

Delineation of a Re-establishing Drainage Network Using SPOT and Landsat Images

NASA Astrophysics Data System (ADS)

Bailey, J. E.; Self, S.; Mouginis-Mark, P. J.

2008-12-01

The 1991 eruption of Mt. Pinatubo, The Philippines, provided a unique opportunity to study the effects on the landscape of a large eruption in part because it took place after the advent of regular satellite-based observations. The eruption formed one large (>100km2) ignimbrite sheet, with over 70% of the total deposit deposited in three primary drainage basins to the west of the volcano. High-resolution (20 m/pixel) satellite images, showing the western drainage basins and surrounding region both before and after the eruption were used to observe the re-establishment and evolution of drainage networks on the newly emplaced ignimbrite sheet. Changes in the drainage networks were delineated from a time series of SPOT (Satellite Pour l'Observation de la Terre) and Landsat multi-spectral satellite images. The analysis of which was supplemented by ground- based observations. The satellite images showed that the blue prints for the new drainage systems were established early (within days of the eruption) and at a large-scale followed the pre-eruption pattern. However, the images also illustrated the ephemeral nature of many channels due to the influence of secondary pyroclastic flows, lahar- dammed lake breakouts, stream piracy and shifts due to erosion. Characteristics of the defined drainage networks were used to infer the relative influence on the lahar hazard within each drainage basin.

Neural Representation of Motion-In-Depth in Area MT

PubMed Central

Sanada, Takahisa M.

2014-01-01

Neural processing of 2D visual motion has been studied extensively, but relatively little is known about how visual cortical neurons represent visual motion trajectories that include a component toward or away from the observer (motion in depth). Psychophysical studies have demonstrated that humans perceive motion in depth based on both changes in binocular disparity over time (CD cue) and interocular velocity differences (IOVD cue). However, evidence for neurons that represent motion in depth has been limited, especially in primates, and it is unknown whether such neurons make use of CD or IOVD cues. We show that approximately one-half of neurons in macaque area MT are selective for the direction of motion in depth, and that this selectivity is driven primarily by IOVD cues, with a small contribution from the CD cue. Our results establish that area MT, a central hub of the primate visual motion processing system, contains a 3D representation of visual motion. PMID:25411481

Locating the depth of magma supply for volcanic eruptions, insights from Mt. Cameroon

PubMed Central

Geiger, Harri; Barker, Abigail K.; Troll, Valentin R.

2016-01-01

Mt. Cameroon is one of the most active volcanoes in Africa and poses a possible threat to about half a million people in the area, yet knowledge of the volcano’s underlying magma supply system is sparse. To characterize Mt. Cameroon’s magma plumbing system, we employed mineral-melt equilibrium thermobarometry on the products of the volcano’s two most recent eruptions of 1999 and 2000. Our results suggest pre-eruptive magma storage between 20 and 39 km beneath Mt. Cameroon, which corresponds to the Moho level and below. Additionally, the 1999 eruption products reveal several shallow magma pockets between 3 and 12 km depth, which are not detected in the 2000 lavas. This implies that small-volume magma batches actively migrate through the plumbing system during repose intervals. Evolving and migrating magma parcels potentially cause temporary unrest and short-lived explosive outbursts, and may be remobilized during major eruptions that are fed from sub-Moho magma reservoirs. PMID:27713494

Locating the depth of magma supply for volcanic eruptions, insights from Mt. Cameroon.

PubMed

Geiger, Harri; Barker, Abigail K; Troll, Valentin R

2016-10-07

Mt. Cameroon is one of the most active volcanoes in Africa and poses a possible threat to about half a million people in the area, yet knowledge of the volcano's underlying magma supply system is sparse. To characterize Mt. Cameroon's magma plumbing system, we employed mineral-melt equilibrium thermobarometry on the products of the volcano's two most recent eruptions of 1999 and 2000. Our results suggest pre-eruptive magma storage between 20 and 39 km beneath Mt. Cameroon, which corresponds to the Moho level and below. Additionally, the 1999 eruption products reveal several shallow magma pockets between 3 and 12 km depth, which are not detected in the 2000 lavas. This implies that small-volume magma batches actively migrate through the plumbing system during repose intervals. Evolving and migrating magma parcels potentially cause temporary unrest and short-lived explosive outbursts, and may be remobilized during major eruptions that are fed from sub-Moho magma reservoirs.

Recombinant Human Melatonin Receptor MT1 Isolated in Mixed Detergents Shows Pharmacology Similar to That in Mammalian Cell Membranes

PubMed Central

Logez, Christel; Berger, Sylvie; Legros, Céline; Banères, Jean-Louis; Cohen, William; Delagrange, Philippe; Nosjean, Olivier; Boutin, Jean A.; Ferry, Gilles

2014-01-01

The human melatonin MT1 receptor—belonging to the large family of G protein-coupled receptors (GPCRs)—plays a key role in circadian rhythm regulation and is notably involved in sleep disorders and depression. Structural and functional information at the molecular level are highly desired for fine characterization of this receptor; however, adequate techniques for isolating soluble MT1 material suitable for biochemical and biophysical studies remain lacking. Here we describe the evaluation of a panel of constructs and host systems for the production of recombinant human MT1 receptors, and the screening of different conditions for their solubilization and purification. Our findings resulted in the establishment of an original strategy using a mixture of Fos14 and CHAPS detergents to extract and purify a recombinant human MT1 from Pichia pastoris membranes. This procedure enabled the recovery of relatively pure, monomeric and ligand-binding active MT1 receptor in the near-milligram range. A comparative study based on extensive ligand-binding characterization highlighted a very close correlation between the pharmacological profiles of MT1 purified from yeast and the same receptor present in mammalian cell membranes. The high quality of the purified MT1 was further confirmed by its ability to activate its cognate Gαi protein partner when reconstituted in lipid discs, thus opening novel paths to investigate this receptor by biochemical and biophysical approaches. PMID:24959712

Recombinant human melatonin receptor MT1 isolated in mixed detergents shows pharmacology similar to that in mammalian cell membranes.

PubMed

Logez, Christel; Berger, Sylvie; Legros, Céline; Banères, Jean-Louis; Cohen, William; Delagrange, Philippe; Nosjean, Olivier; Boutin, Jean A; Ferry, Gilles; Simonin, Frédéric; Wagner, Renaud

2014-01-01

The human melatonin MT1 receptor-belonging to the large family of G protein-coupled receptors (GPCRs)-plays a key role in circadian rhythm regulation and is notably involved in sleep disorders and depression. Structural and functional information at the molecular level are highly desired for fine characterization of this receptor; however, adequate techniques for isolating soluble MT1 material suitable for biochemical and biophysical studies remain lacking. Here we describe the evaluation of a panel of constructs and host systems for the production of recombinant human MT1 receptors, and the screening of different conditions for their solubilization and purification. Our findings resulted in the establishment of an original strategy using a mixture of Fos14 and CHAPS detergents to extract and purify a recombinant human MT1 from Pichia pastoris membranes. This procedure enabled the recovery of relatively pure, monomeric and ligand-binding active MT1 receptor in the near-milligram range. A comparative study based on extensive ligand-binding characterization highlighted a very close correlation between the pharmacological profiles of MT1 purified from yeast and the same receptor present in mammalian cell membranes. The high quality of the purified MT1 was further confirmed by its ability to activate its cognate Gαi protein partner when reconstituted in lipid discs, thus opening novel paths to investigate this receptor by biochemical and biophysical approaches.

Activation of the Human MT Complex by Motion in Depth Induced by a Moving Cast Shadow

PubMed Central

Katsuyama, Narumi; Usui, Nobuo; Taira, Masato

2016-01-01

A moving cast shadow is a powerful monocular depth cue for motion perception in depth. For example, when a cast shadow moves away from or toward an object in a two-dimensional plane, the object appears to move toward or away from the observer in depth, respectively, whereas the size and position of the object are constant. Although the cortical mechanisms underlying motion perception in depth by cast shadow are unknown, the human MT complex (hMT+) is likely involved in the process, as it is sensitive to motion in depth represented by binocular depth cues. In the present study, we examined this possibility by using a functional magnetic resonance imaging (fMRI) technique. First, we identified the cortical regions sensitive to the motion of a square in depth represented via binocular disparity. Consistent with previous studies, we observed significant activation in the bilateral hMT+, and defined functional regions of interest (ROIs) there. We then investigated the activity of the ROIs during observation of the following stimuli: 1) a central square that appeared to move back and forth via a moving cast shadow (mCS); 2) a segmented and scrambled cast shadow presented beside the square (sCS); and 3) no cast shadow (nCS). Participants perceived motion of the square in depth in the mCS condition only. The activity of the hMT+ was significantly higher in the mCS compared with the sCS and nCS conditions. Moreover, the hMT+ was activated equally in both hemispheres in the mCS condition, despite presentation of the cast shadow in the bottom-right quadrant of the stimulus. Perception of the square moving in depth across visual hemifields may be reflected in the bilateral activation of the hMT+. We concluded that the hMT+ is involved in motion perception in depth induced by moving cast shadow and by binocular disparity. PMID:27597999

Progesterone and calcitriol reduce invasive potential of endometrial cancer cells by targeting ARF6, NEDD9 and MT1-MMP.

PubMed

Waheed, Sana; Dorjbal, Batsukh; Hamilton, Chad A; Maxwell, G Larry; Rodriguez, Gustavo C; Syed, Viqar

2017-12-26

Previously, we have demonstrated that progesterone and calcitriol synergistically inhibit growth of endometrial and ovarian cancer by enhancing apoptosis and causing cell cycle arrest. Metastasis is the main reason of mortality in cancer patients. Activation of ADP-Ribosylation Factor 6 (ARF6), Neural Precursor cell expressed Developmentally Downregulated 9 (NEDD9), and Membrane-Type-1 Matrix Metalloproteinase (MT1-MMP) have been implicated in promoting tumor growth and metastasis. We examined the effects of progesterone, calcitriol and progesterone-calcitriol combination on metastasis promoting proteins in endometrial cancer. Expression of ARF6, NEDD9, and MT1-MMP was enhanced in advanced-stage endometrial tumors and in cancer cell lines compared to normal tissues and immortalized EM-E6/E7-TERT endometrial epithelial cells. Knockdown of these proteins significantly inhibited the invasiveness of the cancer cells. The expression levels of all three proteins was reduced with progesterone and progesterone-calcitriol combination treatment, whereas calcitriol alone showed no effect on their expression but moderately decreased MT1-MMP activity. Fluorescence microscopy showed membrane expression of MT1-MMP in vehicle and calcitriol-treated endometrial cancer cells. However, progesterone and calcitriol-progesterone combination treatment revealed MT1-MMP in the cytoplasm. Furthermore, progesterone and calcitriol reduced the activity of MT1-MMP, MMP-9, and MMP-2. In addition, invadopodia regulatory proteins were attenuated in both progesterone and progesterone-calcitriol combination treated cells as well as in MT1-MMP knockdown cells. Thus, targeting the aberrant MT1-MMP signaling with progesterone-calcitriol may be a novel approach to impede MT1-MMP mediated cancer dissemination and may have therapeutic benefits for endometrial cancer patients.

Progesterone and calcitriol reduce invasive potential of endometrial cancer cells by targeting ARF6, NEDD9 and MT1-MMP

PubMed Central

Waheed, Sana; Dorjbal, Batsukh; Hamilton, Chad A.; Maxwell, G. Larry; Rodriguez, Gustavo C.; Syed, Viqar

2017-01-01

Previously, we have demonstrated that progesterone and calcitriol synergistically inhibit growth of endometrial and ovarian cancer by enhancing apoptosis and causing cell cycle arrest. Metastasis is the main reason of mortality in cancer patients. Activation of ADP-Ribosylation Factor 6 (ARF6), Neural Precursor cell expressed Developmentally Downregulated 9 (NEDD9), and Membrane-Type-1 Matrix Metalloproteinase (MT1-MMP) have been implicated in promoting tumor growth and metastasis. We examined the effects of progesterone, calcitriol and progesterone-calcitriol combination on metastasis promoting proteins in endometrial cancer. Expression of ARF6, NEDD9, and MT1-MMP was enhanced in advanced-stage endometrial tumors and in cancer cell lines compared to normal tissues and immortalized EM-E6/E7-TERT endometrial epithelial cells. Knockdown of these proteins significantly inhibited the invasiveness of the cancer cells. The expression levels of all three proteins was reduced with progesterone and progesterone-calcitriol combination treatment, whereas calcitriol alone showed no effect on their expression but moderately decreased MT1-MMP activity. Fluorescence microscopy showed membrane expression of MT1-MMP in vehicle and calcitriol-treated endometrial cancer cells. However, progesterone and calcitriol-progesterone combination treatment revealed MT1-MMP in the cytoplasm. Furthermore, progesterone and calcitriol reduced the activity of MT1-MMP, MMP-9, and MMP-2. In addition, invadopodia regulatory proteins were attenuated in both progesterone and progesterone-calcitriol combination treated cells as well as in MT1-MMP knockdown cells. Thus, targeting the aberrant MT1-MMP signaling with progesterone-calcitriol may be a novel approach to impede MT1-MMP mediated cancer dissemination and may have therapeutic benefits for endometrial cancer patients. PMID:29371931

The Music Therapy Session Assessment Scale (MT-SAS): Validation of a new tool for music therapy process evaluation.

PubMed

Raglio, Alfredo; Gnesi, Marco; Monti, Maria Cristina; Oasi, Osmano; Gianotti, Marta; Attardo, Lapo; Gontero, Giulia; Morotti, Lara; Boffelli, Sara; Imbriani, Chiara; Montomoli, Cristina; Imbriani, Marcello

2017-11-01

Music therapy (MT) interventions are aimed at creating and developing a relationship between patient and therapist. However, there is a lack of validated observational instruments to consistently evaluate the MT process. The purpose of this study was the validation of Music Therapy Session Assessment Scale (MT-SAS), designed to assess the relationship between therapist and patient during active MT sessions. Videotapes of a single 30-min session per patient were considered. A pilot study on the videotapes of 10 patients was carried out to help refine the items, define the scoring system and improve inter-rater reliability among the five raters. Then, a validation study on 100 patients with different clinical conditions was carried out. The Italian MT-SAS was used throughout the process, although we also provide an English translation. The final scale consisted of 7 binary items accounting for eye contact, countenance, and nonverbal and sound-music communication. In the pilot study, raters were found to share an acceptable level of agreement in their assessments. Explorative factorial analysis disclosed a single homogeneous factor including 6 items (thus supporting an ordinal total score), with only the item about eye contact being unrelated to the others. Moreover, the existence of 2 different archetypal profiles of attuned and disattuned behaviours was highlighted through multiple correspondence analysis. As suggested by the consistent results of 2 different analyses, MT-SAS is a reliable tool that globally evaluates sonorous-musical and nonverbal behaviours related to emotional attunement and empathetic relationship between patient and therapist during active MT sessions. Copyright © 2017 John Wiley & Sons, Ltd.

Immunohistochemical demonstration of EphA2 processing by MT1-MMP in invasive cutaneous squamous cell carcinoma.

PubMed

Tatsukawa, Ryoko; Koga, Kaori; Aoki, Mikiko; Koshikawa, Naohiko; Imafuku, Shinichi; Nakayama, Juichiro; Nabeshima, Kazuki

2016-07-01

Erythropoietin-producing hepatocellular receptor-2 (EphA2) overexpression is prevalent in many types of human cancers, and it has been reported that high EphA2 expression is correlated with malignancy. Recent studies revealed that processing of EphA2 by cleaving off the N-terminal portion by membrane-type 1 matrix metalloproteinase (MT1-MMP) promotes invasion via stimulation of Ras in cancer cells in vitro. The objectives of this study were to investigate the presence and role of EphA2 processing in cutaneous squamous cell carcinoma (SCC) tissues. EphA2 (C-terminal and N-terminal) and MT1-MMP expression patterns and levels were analyzed immunohistochemically in SCC (n = 70) and Bowen disease (BD; n = 20). Levels of MT1-MMP and EphA2 expression were evaluated using digital image analysis. Proximity between MT1-MMP and EphA2 in cancer cells and its effect on EphA2 processing were investigated using a combination of in situ proximity ligation assay (PLA) and Western blotting. Immunohistochemical analyses showed that levels of EphA2 N-terminal expression were significantly lower than those of EphA2 C-terminal expression in SCC, whereas levels of EphA2 C- and N-terminal expression were similar in BD. Western blotting showed processed EphA2 fragments in human SCC tissues. Expression levels of MT1-MMP, EphA2, and processed EphA2 fragments were higher in SCC than BD. Proximity between MT1-MMP and EphA2 in SCC was demonstrated by in situ PLA. Our results suggest possible involvement of MT1-MMP processing of EphA2 in invasiveness of cutaneous SCC.

Anaerobic degradation of a mixture of MtBE, EtBE, TBA, and benzene under different redox conditions.

PubMed

van der Waals, Marcelle J; Pijls, Charles; Sinke, Anja J C; Langenhoff, Alette A M; Smidt, Hauke; Gerritse, Jan

2018-04-01

The increasing use of biobased fuels and fuel additives can potentially change the typical fuel-related contamination in soil and groundwater. Anaerobic biotransformation of the biofuel additive ethyl tert-butyl ether (EtBE), as well as of methyl tert-butyl ether (MtBE), benzene, and tert-butyl alcohol (TBA, a possible oxygenate metabolite), was studied at an industrially contaminated site and in the laboratory. Analysis of groundwater samples indicated that in the field MtBE was degraded, yielding TBA as major product. In batch microcosms, MtBE was degraded under different conditions: unamended control, with medium without added electron acceptors, or with ferrihydrite or sulfate (with or without medium) as electron acceptor, respectively. Degradation of EtBE was not observed under any of these conditions tested. TBA was partially depleted in parallel with MtBE. Results of microcosm experiments with MtBE substrate analogues, i.e., syringate, vanillate, or ferulate, were in line with the hypothesis that the observed TBA degradation is a cometabolic process. Microcosms with ferulate, syringate, isopropanol, or diethyl ether showed EtBE depletion up to 86.5% of the initial concentration after 83 days. Benzene was degraded in the unamended controls, with medium without added electron acceptors and with ferrihydrite, sulfate, or chlorate as electron acceptor, respectively. In the presence of nitrate, benzene was only degraded after addition of an anaerobic benzene-degrading community. Nitrate and chlorate hindered MtBE, EtBE, and TBA degradation.

MODFLOW/MT3DMS-based simulation of variable-density ground water flow and transport

USGS Publications Warehouse

Langevin, C.D.; Guo, W.

2006-01-01

This paper presents an approach for coupling MODFLOW and MT3DMS for the simulation of variable-density ground water flow. MODFLOW routines were modified to solve a variable-density form of the ground water flow equation in which the density terms are calculated using an equation of state and the simulated MT3DMS solute concentrations. Changes to the MODFLOW and MT3DMS input files were kept to a minimum, and thus existing data files and data files created with most pre- and postprocessors can be used directly with the SEAWAT code. The approach was tested by simulating the Henry problem and two of the saltpool laboratory experiments (low- and high-density cases). For the Henry problem, the simulated results compared well with the steady-state semianalytic solution and also the transient isochlor movement as simulated by a finite-element model. For the saltpool problem, the simulated breakthrough curves compared better with the laboratory measurements for the low-density case than for the high-density case but showed good agreement with the measured salinity isosurfaces for both cases. Results from the test cases presented here indicate that the MODFLOW/MT3DMS approach provides accurate solutions for problems involving variable-density ground water flow and solute transport. ?? 2006 National Ground Water Association.

Species mtDNA genetic diversity explained by infrapopulation size in a host-symbiont system.

PubMed

Doña, Jorge; Moreno-García, Marina; Criscione, Charles D; Serrano, David; Jovani, Roger

2015-12-01

Understanding what shapes variation in genetic diversity among species remains a major challenge in evolutionary ecology, and it has been seldom studied in parasites and other host-symbiont systems. Here, we studied mtDNA variation in a host-symbiont non-model system: 418 individual feather mites from 17 feather mite species living on 17 different passerine bird species. We explored how a surrogate of census size, the median infrapopulation size (i.e., the median number of individual parasites per infected host individual), explains mtDNA genetic diversity. Feather mite species genetic diversity was positively correlated with mean infrapopulation size, explaining 34% of the variation. As expected from the biology of feather mites, we found bottleneck signatures for most of the species studied but, in particular, three species presented extremely low mtDNA diversity values given their infrapopulation size. Their star-like haplotype networks (in contrast with more reticulated networks for the other species) suggested that their low genetic diversity was the consequence of severe bottlenecks or selective sweeps. Our study shows for the first time that mtDNA diversity can be explained by infrapopulation sizes, and suggests that departures from this relationship could be informative of underlying ecological and evolutionary processes.

Electrochemical detection of the MT-ND6 gene and its enzymatic digestion: application in human genomic sample.

PubMed

Mazloum-Ardakani, Mohammad; Ahmadi, Roya; Heidari, Mohammad Mehdi; Sheikh-Mohseni, Mohammad Ali

2014-06-15

A simple electrochemical biosensor was developed for the detection of the mitochondrial NADH dehydrogenase 6 gene (MT-ND6) and its enzymatic digestion by BamHI enzyme. This biosensor was fabricated by modification of a glassy carbon electrode with gold nanoparticles (AuNPs/GCE) and a probe oligonucleotide (ssDNA/AuNPs/GCE). The probe, which is a thiolated segment of the MT-ND6 gene, was deposited by self-assembling immobilization on AuNPs/GCE. Two indicators including methylene blue (MB) and neutral red (NR) were used as the electroactive indicators and the electrochemical response of the modified electrode was measured by differential pulse voltammetry. The proposed biosensor can detect the complementary sequences of the MT-ND6 gene. Also the modified electrode was used for the detection of an enzymatic digestion process by BamHI enzyme. The electrochemical biosensor can detect the MT-ND6 gene and its enzymatic digestion in polymerase chain reaction (PCR)-amplified DNA extracted from human blood. Also the biosensor was used directly for detection of the MT-ND6 gene in all of the human genome. Copyright © 2014 Elsevier Inc. All rights reserved.

Video-Seismic coupling for debris flow study at Merapi Volcano, Indonesia

NASA Astrophysics Data System (ADS)

Budi Wibowo, Sandy; Lavigne, Franck; Mourot, Philippe; Sukatja, Bambang

2016-04-01

Previous lahar disasters caused at least 44.252 death toll worldwide from 1600 to 2010 of which 52 % was due to a single event in the late 20th century. The need of a better understanding of lahar flow behavior makes general public and stakeholders much more curious than before. However, the dynamics of lahar in motion is still poorly understood because data acquisition of active flows is difficult. This research presents debris-flow-type lahar on February 28, 2014 at Merapi volcano in Indonesia. The lahar dynamics was studied in the frame of the SEDIMER Project (Sediment-related Disasters following the 2010 centennial eruption of Merapi Volcano, Java, Indonesia) based on coupling between video and seismic data analysis. We installed a seismic station at Gendol river (1090 meters asl, 4.6 km south from the summit) consisting of two geophones placed 76 meters apart parallel to the river, a high definition camera on the edge of the river and two raingauges at east and west side of the river. The results showed that the behavior of this lahar changed continuously during the event. The lahar front moved at an average speed of 4.1 m/s at the observation site. Its maximum velocity reached 14.5 m/s with a peak discharge of 473 m3/s. The maximum depth of the flow reached 7 m. Almost 600 blocks of more than 1 m main axis were identified on the surface of the lahar during 36 minutes, which represents an average block discharge of 17 blocks per minute. Seismic frequency ranged from 10 to 150 Hz. However, there was a clear difference between upstream and downstream seismic characteristics. The interpretation related to this difference could be improved by the results of analysis of video recordings, especially to differentiate the debris flow and hyperconcentrated flow phase. The lahar video is accessible online to the broader community (https://www.youtube.com/watch?v=wlVssRoaPbw). Keywords: lahar, video, seismic signal, debris flow, hyperconcentrated flow, Merapi, Indonesia.

Transportation observations, considerations and recommendations for Mt. Hood National Forest

DOT National Transportation Integrated Search

2009-06-24

A field investigation of the current transportation infrastructure and operations at Mt. Hood : National Forest (MHNF) by the interagency Transportation Assistance Group (TAG) was conducted June : 24-26, 2009, on behalf of the U.S. Forest Service (US...

Mt. Pinatubo Volcano - Post Eruption, Luzon, Philippines

NASA Image and Video Library

1992-08-08