Fates of eroded soil organic carbon: Mississippi Basin case study

USGS Publications Warehouse

Smith, S.V.; Sleezer, R.O.; Renwick, W.H.; Buddemeier, R.W.

2005-01-01

We have developed a mass balance analysis of organic carbon (OC) across the five major river subsystems of the Mississippi (MS) Basin (an area of 3.2 ?? 106 km2). This largely agricultural landscape undergoes a bulk soil erosion rate of ???480 t??km -2??yr-1 (???1500 ?? 106 t/yr, across the MS Basin), and a soil organic carbon (SOC) erosion rate of ???7 t??km-2??yr-1 (???22 ?? 106 t/yr). Erosion translocates upland SOC to alluvial deposits, water impoundments, and the ocean. Soil erosion is generally considered to be a net source of CO2 release to the atmosphere in global budgets. However, our results indicate that SOC erosion and relocation of soil apparently can reduce the net SOC oxidation rate of the original upland SOC while promoting net replacement of eroded SOC in upland soils that were eroded. Soil erosion at the MS Basin scale is, therefore, a net CO2 sink rather than a source. ?? 2005 by the Ecological Society of America.

Understanding the sources and effects of abandoned, lost, and discarded fishing gear on marine turtles in northern Australia.

PubMed

Wilcox, Chris; Heathcote, Grace; Goldberg, Jennifer; Gunn, Riki; Peel, David; Hardesty, Britta Denise

2015-02-01

Globally, 6.4 million tons of fishing gear are lost in the oceans annually. This gear (i.e., ghost nets), whether accidently lost, abandoned, or deliberately discarded, threatens marine wildlife as it drifts with prevailing currents and continues to entangle marine organisms indiscriminately. Northern Australia has some of the highest densities of ghost nets in the world, with up to 3 tons washing ashore per kilometer of shoreline annually. This region supports globally significant populations of internationally threatened marine fauna, including 6 of the 7 extant marine turtles. We examined the threat ghost nets pose to marine turtles and assessed whether nets associated with particular fisheries are linked with turtle entanglement by analyzing the capture rates of turtles and potential source fisheries from nearly 9000 nets found on Australia's northern coast. Nets with relatively larger mesh and smaller twine sizes (e.g., pelagic drift nets) had the highest probability of entanglement for marine turtles. Net size was important; larger nets appeared to attract turtles, which further increased their catch rates. Our results point to issues with trawl and drift-net fisheries, the former due to the large number of nets and fragments found and the latter due to the very high catch rates resulting from the net design. Catch rates for fine-mesh gill nets can reach as high as 4 turtles/100 m of net length. We estimated that the total number of turtles caught by the 8690 ghost nets we sampled was between 4866 and 14,600, assuming nets drift for 1 year. Ghost nets continue to accumulate on Australia's northern shore due to both legal and illegal fishing; over 13,000 nets have been removed since 2005. This is an important and ongoing transboundary threat to biodiversity in the region that requires attention from the countries surrounding the Arafura and Timor Seas. © 2014 Society for Conservation Biology.

Determinants of Wealth Fluctuation: Changes in Hard-To-Measure Economic Variables in a Panel Study

PubMed Central

Pfeffer, Fabian T.; Griffin, Jamie

2017-01-01

Measuring fluctuation in families’ economic conditions is the raison d’être of household panel studies. Accordingly, a particularly challenging critique is that extreme fluctuation in measured economic characteristics might indicate compounding measurement error rather than actual changes in families’ economic wellbeing. In this article, we address this claim by moving beyond the assumption that particularly large fluctuation in economic conditions might be too large to be realistic. Instead, we examine predictors of large fluctuation, capturing sources related to actual socio-economic changes as well as potential sources of measurement error. Using the Panel Study of Income Dynamics, we study between-wave changes in a dimension of economic wellbeing that is especially hard to measure, namely, net worth as an indicator of total family wealth. Our results demonstrate that even very large between-wave changes in net worth can be attributed to actual socio-economic and demographic processes. We do, however, also identify a potential source of measurement error that contributes to large wealth fluctuation, namely, the treatment of incomplete information, presenting a pervasive challenge for any longitudinal survey that includes questions on economic assets. Our results point to ways for improving wealth variables both in the data collection process (e.g., by measuring active savings) and in data processing (e.g., by improving imputation algorithms). PMID:28316752

Microsoft C#.NET program and electromagnetic depth sounding for large loop source

NASA Astrophysics Data System (ADS)

Prabhakar Rao, K.; Ashok Babu, G.

2009-07-01

A program, in the C# (C Sharp) language with Microsoft.NET Framework, is developed to compute the normalized vertical magnetic field of a horizontal rectangular loop source placed on the surface of an n-layered earth. The field can be calculated either inside or outside the loop. Five C# classes with member functions in each class are, designed to compute the kernel, Hankel transform integral, coefficients for cubic spline interpolation between computed values and the normalized vertical magnetic field. The program computes the vertical magnetic field in the frequency domain using the integral expressions evaluated by a combination of straightforward numerical integration and the digital filter technique. The code utilizes different object-oriented programming (OOP) features. It finally computes the amplitude and phase of the normalized vertical magnetic field. The computed results are presented for geometric and parametric soundings. The code is developed in Microsoft.NET visual studio 2003 and uses various system class libraries.

Why is there net surface heating over the Antarctic Circumpolar Current?

NASA Astrophysics Data System (ADS)

Czaja, Arnaud; Marshall, John

2015-05-01

Using a combination of atmospheric reanalysis data, climate model outputs and a simple model, key mechanisms controlling net surface heating over the Southern Ocean are identified. All data sources used suggest that, in a streamline-averaged view, net surface heating over the Antarctic Circumpolar Current (ACC) is a result of net accumulation of solar radiation rather than a result of heat gain through turbulent fluxes (the latter systematically cool the upper ocean). It is proposed that the fraction of this net radiative heat gain realized as net ACC heating is set by two factors. First, the sea surface temperature at the southern edge of the ACC. Second, the relative strength of the negative heatflux feedbacks associated with evaporation at the sea surface and advection of heat by the residual flow in the oceanic mixed layer. A large advective feedback and a weak evaporative feedback maximize net ACC heating. It is shown that the present Southern Ocean and its circumpolar current are in this heating regime.

Noninvasive Fetal ECG: the PhysioNet/Computing in Cardiology Challenge 2013.

PubMed

Silva, Ikaro; Behar, Joachim; Sameni, Reza; Zhu, Tingting; Oster, Julien; Clifford, Gari D; Moody, George B

2013-03-01

The PhysioNet/CinC 2013 Challenge aimed to stimulate rapid development and improvement of software for estimating fetal heart rate (FHR), fetal interbeat intervals (FRR), and fetal QT intervals (FQT), from multichannel recordings made using electrodes placed on the mother's abdomen. For the challenge, five data collections from a variety of sources were used to compile a large standardized database, which was divided into training, open test, and hidden test subsets. Gold-standard fetal QRS and QT interval annotations were developed using a novel crowd-sourcing framework. The challenge organizers used the hidden test subset to evaluate 91 open-source software entries submitted by 53 international teams of participants in three challenge events, estimating FHR, FRR, and FQT using the hidden test subset, which was not available for study by participants. Two additional events required only user-submitted QRS annotations to evaluate FHR and FRR estimation accuracy using the open test subset available to participants. The challenge yielded a total of 91 open-source software entries. The best of these achieved average estimation errors of 187bpm 2 for FHR, 20.9 ms for FRR, and 152.7 ms for FQT. The open data sets, scoring software, and open-source entries are available at PhysioNet for researchers interested on working on these problems.

CO2 and CH4 exchanges between land ecosystems and the atmosphere in northern high latitudes over the 21st century

USGS Publications Warehouse

Zhuang, Q.; Melillo, J.M.; Sarofim, M.C.; Kicklighter, D.W.; McGuire, A.D.; Felzer, B.S.; Sokolov, A.; Prinn, R.G.; Steudler, P.A.; Hu, S.

2006-01-01

Terrestrial ecosystems of the northern high latitudes (above 50??N) exchange large amounts of CO2 and CH4 with the atmosphere each year. Here we use a process-based model to estimate the budget of CO 2 and CH4 of the region for current climate conditions and for future scenarios by considering effects of permafrost dynamics, CO 2 fertilization of photosynthesis and fire. We find that currently the region is a net source of carbon to the atmosphere at 276 Tg C yr -1. We project that throughout the 21st century, the region will most likely continue as a net source of carbon and the source will increase by up to 473 Tg C yr-1 by the end of the century compared to the current emissions. However our coupled carbon and climate model simulations show that these emissions will exert relatively small radiative forcing on global climate system compared to large amounts of anthropogenic emissions. Copyright 2006 by the American Geophysical Union.

Impact of the heatwave in 2003 on the summer CH4 and N2O budget of a spruce forest ecosystem: A four-year comparison

NASA Astrophysics Data System (ADS)

Lamers, M.; Fiedler, S.; Jungkunst, H. F.; Stahr, K.; Streck, T.

2009-04-01

Both CH4 and N2O reduction and oxidation are highly sensitive to variation in soil moisture. Significant changes of net CH4 and total N2O fluxes from soils can therefore be expected to accompany redistribution for precipitation in the course of climate change where more extreme events are predicted for the future. The extreme summer drought in 2003 offered the unique opportunity to study the impact of such events on the emission of greenhouse gases, such as methane or nitrous oxide, under field conditions. The main objective of the present study was to evaluate the impact of the summer drought in 2003 on the net methane and nitrous oxide budget of a spruce forest ecosystem (South-West Germany) with large variation in soil drainage. During the summers of 2000-2004 we measured net CH4 and N2O fluxes (bi)-weekly using the closed-chamber technique for six different soil types ranging from well-aerated Cambisols to poorly drained Gleysols and a wet Histosol. With regard to CH4 the extreme summer draught (1) did not elevate net CH4-sink function of soils, but (2) highly reduced net CH4-source strength and (3) reversed the net CH4 source of the investigated catchment into a sink. In all four summers investigated, net ecosystem exchange of CH4 was found only in the hydromorphic soils but not in the dominant well-aerated soils. This highlighted the key role of hydromorphic soils for the investigated pedodiverse system. With regard to N2O the summer draught in 2003 significantly reduced N2O emissions at least for the Humic Gleysol and the Sapric Histosol and hence markedly reduced the net N2O source strength of the investigated ecosystem.

Water level, vegetation composition and plant productivity explain greenhouse gas fluxes in temperate cutover fens after inundation

NASA Astrophysics Data System (ADS)

Minke, M.; Augustin, J.; Burlo, A.; Yarmashuk, T.; Chuvashova, H.; Thiele, A.; Freibauer, A.; Tikhonov, V.; Hoffmann, M.

2015-10-01

Rewetting of temperate continental cutover peatlands generally implies the creation of flooded areas, which are - dependent on water depth - colonized by helophytes such as Eriophorum angustifolium, Carex spp., Typha latifolia or Phragmites australis. Reeds of Typha and Phragmites are reported to be large sources of methane, but data on net CO2 uptake are contradictory for Typha and rare for Phragmites. This paper describes the effect of vegetation, water level and nutrient conditions on greenhouse gas (GHG) emissions for representative vegetation types along water level gradients at two rewetted cutover fens (mesotrophic and eutrophic) in Belarus. Greenhouse emissions were measured with manual chambers in weekly to few - weekly intervals over a two years period and interpolated by modelling. All sites had negligible nitrous oxide exchange rates. Most sites were carbon sinks and small GHG sources. Methane emissions were generally associated with net ecosystem CO2 uptake. Small sedges were minor methane emitters and net CO2 sinks, while Phragmites australis sites released large amounts of methane and sequestered very much CO2. Variability of both fluxes increased with site productivity. Floating mats composed of Carex tussocks and Typha latifolia were a source for both methane and CO2. We conclude that shallow, stable flooding is a better measure to arrive at low GHG emissions than deep flooding, and that the risk of high GHG emissions consequent on rewetting is larger for eutrophic than for mesotrophic peatlands.

Enriching semantic knowledge bases for opinion mining in big data applications.

PubMed

Weichselbraun, A; Gindl, S; Scharl, A

2014-10-01

This paper presents a novel method for contextualizing and enriching large semantic knowledge bases for opinion mining with a focus on Web intelligence platforms and other high-throughput big data applications. The method is not only applicable to traditional sentiment lexicons, but also to more comprehensive, multi-dimensional affective resources such as SenticNet. It comprises the following steps: (i) identify ambiguous sentiment terms, (ii) provide context information extracted from a domain-specific training corpus, and (iii) ground this contextual information to structured background knowledge sources such as ConceptNet and WordNet. A quantitative evaluation shows a significant improvement when using an enriched version of SenticNet for polarity classification. Crowdsourced gold standard data in conjunction with a qualitative evaluation sheds light on the strengths and weaknesses of the concept grounding, and on the quality of the enrichment process.

Kinematic Source Rupture Process of the 2008 Iwate-Miyagi Nairiku Earthquake, a MW6.9 thrust earthquake in northeast Japan, using Strong Motion Data

NASA Astrophysics Data System (ADS)

Asano, K.; Iwata, T.

2008-12-01

The 2008 Iwate-Miyagi Nairiku earthquake (MJMA7.2) on June 14, 2008, is a thrust type inland crustal earthquake, which occurred in northeastern Honshu, Japan. In order to see strong motion generation process of this event, the source rupture process is estimated by the kinematic waveform inversion using strong motion data. Strong motion data of the K-NET and KiK-net stations and Aratozawa Dam are used. These stations are located 3-94 km from the epicenter. Original acceleration time histories are integrated into velocity and band- pass filtered between 0.05 and 1 Hz. For obtaining the detailed source rupture process, appropriate velocity structure model for Green's functions should be used. We estimated one dimensional velocity structure model for each strong motion station by waveform modeling of aftershock records. The elastic wave velocity, density, and Q-values for four sedimentary layers are assumed following previous studies. The thickness of each sedimentary layer depends on the station, which is estimated to fit the observed aftershock's waveforms by the optimization using the genetic algorithm. A uniform layered structure model is assumed for crust and upper mantle below the seismic bedrock. We succeeded to get a reasonable velocity structure model for each station to give a good fit of the main S-wave part in the observation of aftershocks. The source rupture process of the mainshock is estimated by the linear kinematic waveform inversion using multiple time windows (Hartzell and Heaton, 1983). A fault plane model is assumed following the moment tensor solution by F-net, NIED. The strike and dip angle is 209° and 51°, respectively. The rupture starting point is fixed at the hypocenter located by the JMA. The obtained source model shows a large slip area in the shallow portion of the fault plane approximately 6 km southwest of the hypocenter. The rupture of the asperity finishes within about 9 s. This large slip area corresponds to the area with surface break reported by the field survey group (e.g., AIST/GSJ, 2008), which supports the existence of the large slip close to the ground surface. But, most of surface offset found by the field survey are less than 0.5 m whereas the slip amount of the shallow asperity of the source inversion result is 3-4 m. In north of the hypocenter, the estimated slip amount is small. Slip direction is almost pure dip-slip for the entire fault (Northwest side goes up against southeast side). Total seismic moment is 2.6× 1019 Nm (MW 6.9). Acknowledgments: Strong motion data of K-NET and KiK-net operated by the National Research Institute for Earth Science and Disaster Prevention are used. Strong motion data of Aratozawa Dam obtained by Miyagi prefecture government is also used in the study.

Sulfate Aerosol in the Arctic: Source Attribution and Radiative Forcing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Yang; Wang, Hailong; Smith, Steven J.

Source attributions of Arctic sulfate and its direct radiative effect for 2010–2014 are quantified in this study using the Community Earth System Model (CESM) equipped with an explicit sulfur source-tagging technique. Regions that have high emissions and/or are near/within the Arctic present relatively large contributions to Arctic sulfate burden, with the largest contribution from sources in East Asia (27%). East Asia and South Asia together have the largest contributions to Arctic sulfate concentrations at 9–12 km, whereas sources within or near the Arctic account largely below 2 km. For remote sources with strong emissions, their contributions to Arctic sulfate burdenmore » are primarily driven by meteorology, while contributions of sources within or near the Arctic are dominated by their emission strength. The sulfate direct radiative effect (DRE) is –0.080 W m-2 at the Arctic surface, offsetting the net warming effect from the combination of in-snow heating and DRE cooling from black carbon. East Asia, Arctic local and Russia/Belarus/Ukraine sources contribute –0.017, –0.016 and –0.014 W m-2, respectively, to Arctic sulfate DRE. A 20% reduction in anthropogenic SO2 emissions leads to a net increase of +0.013 W m-2 forcing at the Arctic surface. These results indicate that a joint reduction in BC emissions could prevent possible Arctic warming from future reductions in SO2 emissions. Sulfate DRE efficiency calculations suggest that short transport pathways together with meteorology favoring long sulfate lifetimes make certain sources more efficient in influencing the Arctic sulfate DRE.« less

Public-domain-software solution to data-access problems for numerical modelers

USGS Publications Warehouse

Jenter, Harry; Signell, Richard

1992-01-01

Unidata's network Common Data Form, netCDF, provides users with an efficient set of software for scientific-data-storage, retrieval, and manipulation. The netCDF file format is machine-independent, direct-access, self-describing, and in the public domain, thereby alleviating many problems associated with accessing output from large hydrodynamic models. NetCDF has programming interfaces in both the Fortran and C computer language with an interface to C++ planned for release in the future. NetCDF also has an abstract data type that relieves users from understanding details of the binary file structure; data are written and retrieved by an intuitive, user-supplied name rather than by file position. Users are aided further by Unidata's inclusion of the Common Data Language, CDL, a printable text-equivalent of the contents of a netCDF file. Unidata provides numerous operators and utilities for processing netCDF files. In addition, a number of public-domain and proprietary netCDF utilities from other sources are available at this time or will be available later this year. The U.S. Geological Survey has produced and is producing a number of public-domain netCDF utilities.

Geospatial Analysis Tool Kit for Regional Climate Datasets (GATOR) : An Open-source Tool to Compute Climate Statistic GIS Layers from Argonne Climate Modeling Results

DTIC Science & Technology

2017-08-01

This large repository of climate model results for North America (Wang and Kotamarthi 2013, 2014, 2015) is stored in Network Common Data Form (NetCDF...Network Common Data Form (NetCDF). UCAR/Unidata Program Center, Boulder, CO. Available at: http://www.unidata.ucar.edu/software/netcdf. Accessed on 6/20...emissions diverge from each other regarding fossil fuel use, technology, and other socioeconomic factors. As a result, the estimated emissions for each of

MoleculeNet: a benchmark for molecular machine learning† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02664a

PubMed Central

Wu, Zhenqin; Ramsundar, Bharath; Feinberg, Evan N.; Gomes, Joseph; Geniesse, Caleb; Pappu, Aneesh S.; Leswing, Karl

2017-01-01

Molecular machine learning has been maturing rapidly over the last few years. Improved methods and the presence of larger datasets have enabled machine learning algorithms to make increasingly accurate predictions about molecular properties. However, algorithmic progress has been limited due to the lack of a standard benchmark to compare the efficacy of proposed methods; most new algorithms are benchmarked on different datasets making it challenging to gauge the quality of proposed methods. This work introduces MoleculeNet, a large scale benchmark for molecular machine learning. MoleculeNet curates multiple public datasets, establishes metrics for evaluation, and offers high quality open-source implementations of multiple previously proposed molecular featurization and learning algorithms (released as part of the DeepChem open source library). MoleculeNet benchmarks demonstrate that learnable representations are powerful tools for molecular machine learning and broadly offer the best performance. However, this result comes with caveats. Learnable representations still struggle to deal with complex tasks under data scarcity and highly imbalanced classification. For quantum mechanical and biophysical datasets, the use of physics-aware featurizations can be more important than choice of particular learning algorithm. PMID:29629118

Costs and cost-effectiveness of vector control in Eritrea using insecticide-treated bed nets.

PubMed

Yukich, Joshua O; Zerom, Mehari; Ghebremeskel, Tewolde; Tediosi, Fabrizio; Lengeler, Christian

2009-03-30

While insecticide-treated nets (ITNs) are a recognized effective method for preventing malaria, there has been an extensive debate in recent years about the best large-scale implementation strategy. Implementation costs and cost-effectiveness are important elements to consider when planning ITN programmes, but so far little information on these aspects is available from national programmes. This study uses a standardized methodology, as part of a larger comparative study, to collect cost data and cost-effectiveness estimates from a large programme providing ITNs at the community level and ante-natal care facilities in Eritrea. This is a unique model of ITN implementation fully integrated into the public health system. Base case analysis results indicated that the average annual cost of ITN delivery (2005 USD 3.98) was very attractive when compared with past ITN delivery studies at different scales. Financing was largely from donor sources though the Eritrean government and net users also contributed funding. The intervention's cost-effectiveness was in a highly attractive range for sub-Saharan Africa. The cost per DALY averted was USD 13 - 44. The cost per death averted was USD 438-1449. Distribution of nets coincided with significant increases in coverage and usage of nets nationwide, approaching or exceeding international targets in some areas. ITNs can be cost-effectively delivered at a large scale in sub-Saharan Africa through a distribution system that is highly integrated into the health system. Operating and sustaining such a system still requires strong donor funding and support as well as a functional and extensive system of health facilities and community health workers already in place.

Patient-Reported Burden of a Neuroendocrine Tumor (NET) Diagnosis: Results From the First Global Survey of Patients With NETs

PubMed Central

Granberg, Dan; Wolin, Edward; Warner, Richard; Sissons, Maia; Kolarova, Teodora; Goldstein, Grace; Pavel, Marianne; Öberg, Kjell; Leyden, John

2017-01-01

Purpose Despite the considerable impact of neuroendocrine tumors (NETs) on patients’ daily lives, the journey of the patient with a NET has rarely been documented, with published data to date being limited to small qualitative studies. NETs are heterogeneous malignancies with nonspecific symptomology, leading to extensive health care use and diagnostic delays that affect survival. A large, international patient survey was conducted to increase understanding of the experience of the patient with a NET and identify unmet needs, with the aim of improving disease awareness and care worldwide. Methods An anonymous, self-reported survey was conducted (online or on paper) from February to May 2014, recruiting patients with NETs from > 12 countries as a collaboration between the International Neuroendocrine Cancer Alliance and Novartis Pharmaceuticals. Survey questions captured information on sociodemographics, clinical characteristics, NET diagnostic experience, disease impact/management, interaction with medical teams, NET knowledge/awareness, and sources of information. This article reports the most relevant findings on patient experience with NETs and the impact of NETs on health care system resources. Results A total of 1,928 patients with NETs participated. A NET diagnosis had a substantially negative impact on patients’ personal and work lives. Patients reported delayed diagnosis and extensive NET-related health care resource use. Patients desired improvement in many aspects of NET care, including availability of a wider range of NET-specific treatment options, better access to NET experts or specialist centers, and a more knowledgeable, better-coordinated/-aligned NET medical team. Conclusion This global patient-reported survey demonstrates the considerable burden of NETs with regard to symptoms, work and daily life, and health care resource use, and highlights considerable unmet needs. Further intervention is required to improve the patient experience among those with NETs. PMID:28717741

Patient-Reported Burden of a Neuroendocrine Tumor (NET) Diagnosis: Results From the First Global Survey of Patients With NETs.

PubMed

Singh, Simron; Granberg, Dan; Wolin, Edward; Warner, Richard; Sissons, Maia; Kolarova, Teodora; Goldstein, Grace; Pavel, Marianne; Öberg, Kjell; Leyden, John

2017-02-01

Despite the considerable impact of neuroendocrine tumors (NETs) on patients' daily lives, the journey of the patient with a NET has rarely been documented, with published data to date being limited to small qualitative studies. NETs are heterogeneous malignancies with nonspecific symptomology, leading to extensive health care use and diagnostic delays that affect survival. A large, international patient survey was conducted to increase understanding of the experience of the patient with a NET and identify unmet needs, with the aim of improving disease awareness and care worldwide. An anonymous, self-reported survey was conducted (online or on paper) from February to May 2014, recruiting patients with NETs from > 12 countries as a collaboration between the International Neuroendocrine Cancer Alliance and Novartis Pharmaceuticals. Survey questions captured information on sociodemographics, clinical characteristics, NET diagnostic experience, disease impact/management, interaction with medical teams, NET knowledge/awareness, and sources of information. This article reports the most relevant findings on patient experience with NETs and the impact of NETs on health care system resources. A total of 1,928 patients with NETs participated. A NET diagnosis had a substantially negative impact on patients' personal and work lives. Patients reported delayed diagnosis and extensive NET-related health care resource use. Patients desired improvement in many aspects of NET care, including availability of a wider range of NET-specific treatment options, better access to NET experts or specialist centers, and a more knowledgeable, better-coordinated/-aligned NET medical team. This global patient-reported survey demonstrates the considerable burden of NETs with regard to symptoms, work and daily life, and health care resource use, and highlights considerable unmet needs. Further intervention is required to improve the patient experience among those with NETs.

Enriching semantic knowledge bases for opinion mining in big data applications

PubMed Central

Weichselbraun, A.; Gindl, S.; Scharl, A.

2014-01-01

This paper presents a novel method for contextualizing and enriching large semantic knowledge bases for opinion mining with a focus on Web intelligence platforms and other high-throughput big data applications. The method is not only applicable to traditional sentiment lexicons, but also to more comprehensive, multi-dimensional affective resources such as SenticNet. It comprises the following steps: (i) identify ambiguous sentiment terms, (ii) provide context information extracted from a domain-specific training corpus, and (iii) ground this contextual information to structured background knowledge sources such as ConceptNet and WordNet. A quantitative evaluation shows a significant improvement when using an enriched version of SenticNet for polarity classification. Crowdsourced gold standard data in conjunction with a qualitative evaluation sheds light on the strengths and weaknesses of the concept grounding, and on the quality of the enrichment process. PMID:25431524

The Influence of Health Policy and Market Factors on the Hospital Safety Net

PubMed Central

Bazzoli, Gloria J; Lindrooth, Richard C; Kang, R ay; Hasnain-Wynia, R omana

2006-01-01

Objective To examine how the financial pressures resulting from the Balanced Budget Act (BBA) of 1997 interacted with private sector pressures to affect indigent care provision. Data Sources/Study Setting American Hospital Association Annual Survey, Area Resource File, InterStudy Health Maintenance Organization files, Current Population Survey, and Bureau of Primary Health Care data. Study Design We distinguished core and voluntary safety net hospitals in our analysis. Core safety net hospitals provide a large share of uncompensated care in their markets and have large indigent care patient mix. Voluntary safety net hospitals provide substantial indigent care but less so than core hospitals. We examined the effect of financial pressure in the initial year of the 1997 BBA on uncompensated care for three hospital groups. Data for 1996–2000 were analyzed using approaches that control for hospital and market heterogeneity. Data Collection/Extraction Methods All urban U.S. general acute care hospitals with complete data for at least 2 years between 1996 and 2000, which totaled 1,693 institutions. Principal Findings Core safety net hospitals reduced their uncompensated care in response to Medicaid financial pressure. Voluntary safety net hospitals also responded in this way but only when faced with the combined forces of Medicaid and private sector payment pressures. Nonsafety net hospitals did not exhibit similar responses. Conclusions Our results are consistent with theories of hospital behavior when institutions face reductions in payment. They raise concern given continuing state budget crises plus the focus of recent federal deficit reduction legislation intended to cut Medicaid expenditures. PMID:16899001

LSDCat: Detection and cataloguing of emission-line sources in integral-field spectroscopy datacubes

NASA Astrophysics Data System (ADS)

Herenz, Edmund Christian; Wisotzki, Lutz

2017-06-01

We present a robust, efficient, and user-friendly algorithm for detecting faint emission-line sources in large integral-field spectroscopic datacubes together with the public release of the software package Line Source Detection and Cataloguing (LSDCat). LSDCat uses a three-dimensional matched filter approach, combined with thresholding in signal-to-noise, to build a catalogue of individual line detections. In a second pass, the detected lines are grouped into distinct objects, and positions, spatial extents, and fluxes of the detected lines are determined. LSDCat requires only a small number of input parameters, and we provide guidelines for choosing appropriate values. The software is coded in Python and capable of processing very large datacubes in a short time. We verify the implementation with a source insertion and recovery experiment utilising a real datacube taken with the MUSE instrument at the ESO Very Large Telescope. The LSDCat software is available for download at http://muse-vlt.eu/science/tools and via the Astrophysics Source Code Library at http://ascl.net/1612.002

Multisource Estimation of Long-term Global Terrestrial Surface Radiation

NASA Astrophysics Data System (ADS)

Peng, L.; Sheffield, J.

2017-12-01

Land surface net radiation is the essential energy source at the earth's surface. It determines the surface energy budget and its partitioning, drives the hydrological cycle by providing available energy, and offers heat, light, and energy for biological processes. Individual components in net radiation have changed historically due to natural and anthropogenic climate change and land use change. Decadal variations in radiation such as global dimming or brightening have important implications for hydrological and carbon cycles. In order to assess the trends and variability of net radiation and evapotranspiration, there is a need for accurate estimates of long-term terrestrial surface radiation. While large progress in measuring top of atmosphere energy budget has been made, huge discrepancies exist among ground observations, satellite retrievals, and reanalysis fields of surface radiation, due to the lack of observational networks, the difficulty in measuring from space, and the uncertainty in algorithm parameters. To overcome the weakness of single source datasets, we propose a multi-source merging approach to fully utilize and combine multiple datasets of radiation components separately, as they are complementary in space and time. First, we conduct diagnostic analysis of multiple satellite and reanalysis datasets based on in-situ measurements such as Global Energy Balance Archive (GEBA), existing validation studies, and other information such as network density and consistency with other meteorological variables. Then, we calculate the optimal weighted average of multiple datasets by minimizing the variance of error between in-situ measurements and other observations. Finally, we quantify the uncertainties in the estimates of surface net radiation and employ physical constraints based on the surface energy balance to reduce these uncertainties. The final dataset is evaluated in terms of the long-term variability and its attribution to changes in individual components. The goal of this study is to provide a merged observational benchmark for large-scale diagnostic analyses, remote sensing and land surface modeling.

Submesoscale hotspots of productivity and respiration: Insights from high-resolution oxygen and fluorescence sections

NASA Astrophysics Data System (ADS)

Stanley, Rachel H. R.; McGillicuddy, Dennis J.; Sandwith, Zoe O.; Pleskow, Haley M.

2017-12-01

Modeling studies have shown that mesoscale and submesoscale processes can stimulate phytoplankton productivity and export production. Here, we present observations from an undulating, towed Video Plankton Recorder (VPR-II) in the tropical Atlantic. The VPR-II collected profiles of oxygen, fluorescence, temperature and salinity in the upper 140 m of the water column at a spatial resolution of 1 m in the vertical and <2 km in the horizontal. The data reveal remarkable "hotspots", i.e. locations 5-10 km wide which have elevated fluorescence and decreased oxygen, both of which are likely the result of intense submesoscale upwelling. Based on estimates of source water, estimated from identical temperature and salinity surfaces, hotspots are more often areas of net respiration than areas of net production - although the inferred changes in oxygen are subject to uncertainty in the determination of the source of the upwelled waters since the true source water may not have been sampled. We discuss the spatial distribution of these hotspots and present a conceptual model outlining their possible generation and decline. Simultaneous measurements of O2/Ar in the mixed layer from a shipboard mass spectrometer provide estimates of rates of surface net community production. We find that the subsurface biological hotspots are often expressed as an increase in mixed layer rates of net community production. Overall, the large number of these hotspots support the growing evidence that submesoscale processes are important drivers in upper ocean biological production.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kayanne, Hajime; Suzuki, Atsushi; Saito, Hiroshi

Coral reefs are considered to be a source of atmospheric carbon dioxide because of their high calcium carbonate production and low net primary production. This was tested by direct measurement of diurnal changes in the partial pressure of carbon dioxide (P{sub CO2}) in reef waters during two 3-day periods, one in March 1993 and one in March 1994, on Shiraho reef of the Ryukyu Islands, Japan. Although the P{sub CO2} values in reef waters exhibited large diurnal changes ranging from 160 to 520 microatmospheres, they indicate that the reef flat area is a net sink for atmospheric carbon dioxide. Thismore » suggests that the net organic production rate of the reef community exceeded its calcium carbonate production rate during the observation periods. 16 refs., 2 figs., 1 tab.« less

Climate change reduces the net sink of CH4 and N2O in a semiarid grassland

USDA-ARS?s Scientific Manuscript database

Methane (CH4) and nitrous oxide (N2O) are potent greenhouse gases; their concentrations in the atmosphere have increased because of human activity. Soils are important sources and sinks of both gases where their production and consumption are largely regulated by biological processes. Climate change...

SIMULATION OF NITROUS OXIDE EMISSIONS FROM DAIRY FARMS TO ASSESS GREENHOUSE GAS REDUCTION STRATEGIES

USDA-ARS?s Scientific Manuscript database

Farming practices can have a large impact on the net emission of greenhouse gases including carbon dioxide, methane, and nitrous oxide (N**2O). The primary sources of N**2O from dairy farms are nitrification and denitrification processes in soil, with smaller contributions from manure storage and ba...

SIMULATION OF CARBON DIOXIDE EMISSIONS FROM DAIRY FARMS TO ASSESS GREENHOUSE GAS REDUCTION STRATEGIES

USDA-ARS?s Scientific Manuscript database

Farming practices can have a large impact on the soil carbon cycle and the resulting net emission of greenhouse gases including carbon dioxide (CO**2), methane and nitrous oxide. Primary sources of CO**2 emission on dairy farms are soil, plant, and animal respiration with smaller contributions from ...

Mercury evasion from a boreal peatland shortens the timeline for recovery from legacy pollution.

PubMed

Osterwalder, Stefan; Bishop, Kevin; Alewell, Christine; Fritsche, Johannes; Laudon, Hjalmar; Åkerblom, Staffan; Nilsson, Mats B

2017-11-22

Peatlands are a major source of methylmercury that contaminates downstream aquatic food webs. The large store of mercury (Hg) in peatlands could be a source of Hg for over a century even if deposition is dramatically reduced. However, the reliability of Hg mass balances can be questioned due to missing long-term land-atmosphere flux measurements. We used a novel micrometeorological system for continuous measurement of Hg peatland-atmosphere exchange to derive the first annual Hg budget for a peatland. The evasion of Hg (9.4 µg m -2 yr -1 ) over the course of a year was seven times greater than stream Hg export, and over two times greater than wet bulk deposition to the boreal peatland. Measurements of dissolved gaseous Hg in the peat pore water also indicate Hg evasion. The net efflux may result from recent declines in atmospheric Hg concentrations that have turned the peatland from a net sink into a source of atmospheric Hg. This net Hg loss suggests that open boreal peatlands and downstream ecosystems can recover more rapidly from past atmospheric Hg deposition than previously assumed. This has important implications for future levels of methylmercury in boreal freshwater fish and the estimation of historical Hg accumulation rates from peat profiles.

Effect of algal blooms on retention of N, Si and P in Europe's largest coastal lagoon

NASA Astrophysics Data System (ADS)

Vybernaite-Lubiene, I.; Zilius, M.; Giordani, G.; Petkuviene, J.; Vaiciute, D.; Bukaveckas, P. A.; Bartoli, M.

2017-07-01

Nutrient fluxes from land to sea are regulated by climatic factors governing hydrologic loading rates (e.g., storm events, snowmelt) and by internal processes within estuaries that affect nutrient transformation and retention. We compared monthly input and output fluxes of N, Si, and P at the entrance and exit of the hypereutrophic Curonian Lagoon to better understand how seasonal changes in the stoichiometry of nutrient inputs and the occurrence of algal blooms affected nutrient retention within the lagoon. Nutrient ratios were indicative of increasing Si and N limitation during the growing season, and these were associated with a shift from a diatom-based to a cyanobacteria dominated phytoplankton community. The estuary was a net sink for dissolved nutrients, but we observed large interannual difference in the overall retention of N and P. The occurrence of a large cyanobacteria bloom in 2012 was associated with increased export of particulate matter to the Baltic Sea resulting in a net surplus of P export. Bloom conditions mobilized P from sediments and resulted in a shift from net retention to net export for the lagoon. The findings of our study illustrate how changes in nutrient loading ratios influence phytoplankton community composition, which in turn alters the source-sink status of the estuary.

GATECloud.net: a platform for large-scale, open-source text processing on the cloud.

PubMed

Tablan, Valentin; Roberts, Ian; Cunningham, Hamish; Bontcheva, Kalina

2013-01-28

Cloud computing is increasingly being regarded as a key enabler of the 'democratization of science', because on-demand, highly scalable cloud computing facilities enable researchers anywhere to carry out data-intensive experiments. In the context of natural language processing (NLP), algorithms tend to be complex, which makes their parallelization and deployment on cloud platforms a non-trivial task. This study presents a new, unique, cloud-based platform for large-scale NLP research--GATECloud. net. It enables researchers to carry out data-intensive NLP experiments by harnessing the vast, on-demand compute power of the Amazon cloud. Important infrastructural issues are dealt with by the platform, completely transparently for the researcher: load balancing, efficient data upload and storage, deployment on the virtual machines, security and fault tolerance. We also include a cost-benefit analysis and usage evaluation.

Large accumulation of micro-sized synthetic polymer particles in the sea surface microlayer.

PubMed

Song, Young Kyoung; Hong, Sang Hee; Jang, Mi; Kang, Jung-Hoon; Kwon, Oh Youn; Han, Gi Myung; Shim, Won Joon

2014-08-19

Determining the exact abundance of microplastics on the sea surface can be susceptible to the sampling method used. The sea surface microlayer (SML) can accumulate light plastic particles, but this has not yet been sampled. The abundance of microplastics in the SML was evaluated off the southern coast of Korea. The SML sampling method was then compared to bulk surface water filtering, a hand net (50 μm mesh), and a Manta trawl net (330 μm mesh). The mean abundances were in the order of SML water > hand net > bulk water > Manta trawl net. Fourier transform infrared spectroscopy (FTIR) identified that alkyds and poly(acrylate/styrene) accounted for 81 and 11%, respectively, of the total polymer content of the SML samples. These polymers originated from paints and the fiber-reinforced plastic (FRP) matrix used on ships. Synthetic polymers from ship coatings should be considered to be a source of microplastics. Selecting a suitable sampling method is crucial for evaluating microplastic pollution.

Inorganic carbon loading as a primary driver of dissolved carbon dioxide concentrations in the lakes and reservoirs of the contiguous United States

USGS Publications Warehouse

McDonald, Cory P.; Stets, Edward; Striegl, Robert G.; Butman, David

2013-01-01

Accurate quantification of CO2 flux across the air-water interface and identification of the mechanisms driving CO2 concentrations in lakes and reservoirs is critical to integrating aquatic systems into large-scale carbon budgets, and to predicting the response of these systems to changes in climate or terrestrial carbon cycling. Large-scale estimates of the role of lakes and reservoirs in the carbon cycle, however, typically must rely on aggregation of spatially and temporally inconsistent data from disparate sources. We performed a spatially comprehensive analysis of CO2 concentration and air-water fluxes in lakes and reservoirs of the contiguous United States using large, consistent data sets, and modeled the relative contribution of inorganic and organic carbon loading to vertical CO2 fluxes. Approximately 70% of lakes and reservoirs are supersaturated with respect to the atmosphere during the summer (June–September). Although there is considerable interregional and intraregional variability, lakes and reservoirs represent a net source of CO2 to the atmosphere of approximately 40 Gg C d–1 during the summer. While in-lake CO2 concentrations correlate with indicators of in-lake net ecosystem productivity, virtually no relationship exists between dissolved organic carbon and pCO2,aq. Modeling suggests that hydrologic dissolved inorganic carbon supports pCO2,aq in most supersaturated systems (to the extent that 12% of supersaturated systems simultaneously exhibit positive net ecosystem productivity), and also supports primary production in most CO2-undersaturated systems. Dissolved inorganic carbon loading appears to be an important determinant of CO2concentrations and fluxes across the air-water interface in the majority of lakes and reservoirs in the contiguous United States.

Net global warming potential and greenhouse gas intensity

USDA-ARS?s Scientific Manuscript database

Various methods exist to calculate global warming potential (GWP) and greenhouse gas intensity (GHG) as measures of net greenhouse gas (GHG) emissions from agroecosystems. Little is, however, known about net GWP and GHGI that account for all sources and sinks of GHG emissions. Sources of GHG include...

26 CFR 1.904(g)-3T - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2011 CFR

2011-04-01

...(g)-3T Section 1.904(g)-3T Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY....904(g)-3T Ordering rules for the allocation of net operating losses, net capital losses, U.S. source... domestic losses. The rules must be applied in the order set forth in paragraphs (b) through (g) of this...

26 CFR 1.904(g)-3T - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2012 CFR

2012-04-01

...(g)-3T Section 1.904(g)-3T Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY....904(g)-3T Ordering rules for the allocation of net operating losses, net capital losses, U.S. source... domestic losses. The rules must be applied in the order set forth in paragraphs (b) through (g) of this...

Shifting the Arctic Carbon Balance: Effects of a Long-Term Fertilization Experiment and Anomalously Warm Temperatures on Net Ecosystem Exchange in the Alaskan Tundra

NASA Astrophysics Data System (ADS)

Ludwig, S.; Natali, S.; Rastetter, E. B.; Shaver, G. R.; Graham, L. M.; Jastrow, J. D.

2017-12-01

The arctic is warming at an accelerated rate relative to the globe. Among the predicted consequences of warming temperatures in the arctic are increased gross primary productivity (GPP), ecosystem respiration (ER), and nutrient availability. The net effect of these changes on the carbon (C) cycle and resulting C balance and feedback to climate change remain unclear. Historically the Arctic has been a C sink, but evidence from recent years suggests some regions in the Arctic are becoming C sources. To predict the role of the Arctic in global C cycling, the mechanisms affecting arctic C balances need to be better resolved. We measured net ecosystem exchange (NEE) in a long-term, multi-level, fertilization experiment at Toolik Lake, AK during an anomalously warm summer. We modeled NEE, ER, and GPP using a Bayesian network model. The best-fit model included Q10 temperature functions and linear fertilization functions for both ER and GPP. ER was more strongly affected by temperature and GPP was driven more by fertilization level. As a result, fertilization increased the C sink capacity, but only at moderate and low temperatures. At high temperatures (>28 °C) the NEE modeled for the highest level of fertilization was not significantly different from zero. In contrast, at ambient nutrient levels modeled NEE was significantly below zero (net uptake) until 35 °C, when it becomes neutral. Regardless of the level of fertilization, NEE never decreased with warming. Temperature in low ranges (5-15°C) had no net effect on NEE, whereas NEE began to increase exponentially with temperature after a threshold of 15°C until becoming a net source to the atmosphere at 37°C. Our results indicate that the C sink strength of tundra ecosystems can be increased with small increases in nutrient availability, but that large increase in nutrient availability can switch tundra ecosystems into C sources under warm conditions. Warming temperatures in tundra ecosystems will only decrease C sink strength, and the continued increase in days with anomalously high summer temperatures could lead to the Arctic tundra becoming a source of C and a positive feed back to climate change.

The Role of Mycorrhizal Associations in Controlling Biogenic Volatile Organic Carbon Flux From a Temperate Deciduous Forest

NASA Astrophysics Data System (ADS)

Cook, A. A.; Trowbridge, A.; Jacobs, L. M.; Stoy, P. C.; Stevens, P. S.; Phillips, R.

2016-12-01

The sources of and controls over biogenic volatile organic compound (bVOC) fluxes between terrestrial ecosystems and the atmosphere remains poorly understood. Ecosystem bVOC flux models rarely include contributions from leaf litter and soils despite recent findings demonstrating that they can be nontrivial components of total ecosystem bVOC flux. Other recent studies have demonstrated the central role of arbuscular (AM) versus ectomycorrhizal (ECM) fungi in determining litter quality and soil biogeochemistry. Here, we quantify the role of mycorrhizal associations in controlling soil and leaf litter bVOC flux during the growing to non-growing season transition at the Morgan Monroe State Forest Ameriflux Core research site in Indiana, USA. We hypothesize that (1) total bVOC emissions will be greater from ECM plots due to larger belowground microbial biomass, and (2) fast-decomposing litter within the AM-dominated plots will result in an ephemeral pulse in bVOC emissions later in the season. AM and ECM-dominated forest soils were a net bVOC sink early in the growing season following leaf-out, but were net sources during the leaf-fall period in October. In the absence of leaf litter, soils dominated by ECM were a large sink of bVOCs, but leaf litter inputs resulted in a net source, suggesting that leaf litter and not merely soil microbial biomass is critical for understanding hypothesis (1). Temperature explains 57% (21%) of the variability of methanol flux - the bVOC of greatest quantity - in ECM (AM)-dominated plots. Non-methanol bVOC flux is only related to soil temperature in the Fall in ECM-dominated plots, where it explains 71% of the variability. Results are consistent with large methanol efflux with fresh litter after leaf-fall, especially in ECM plots (contrary to hypothesis 2), but net uptake with strong temperature-dependence during the growing season. Seasonality, phenology (including leaf litter dynamics) and mycorrhizal associations should be taken into account to accurately determine the relative contribution of forest soils to ecosystem bVOC fluxes in temperate forests and their sensitivity to environmental drivers.

Acetate Utilization and Butyryl Coenzyme A (CoA):Acetate-CoA Transferase in Butyrate-Producing Bacteria from the Human Large Intestine

PubMed Central

Duncan, Sylvia H.; Barcenilla, Adela; Stewart, Colin S.; Pryde, Susan E.; Flint, Harry J.

2002-01-01

Seven strains of Roseburia sp., Faecalibacterium prausnitzii, and Coprococcus sp. from the human gut that produce high levels of butyric acid in vitro were studied with respect to key butyrate pathway enzymes and fermentation patterns. Strains of Roseburia sp. and F. prausnitzii possessed butyryl coenzyme A (CoA):acetate-CoA transferase and acetate kinase activities, but butyrate kinase activity was not detectable either in growing or in stationary-phase cultures. Although unable to use acetate as a sole source of energy, these strains showed net utilization of acetate during growth on glucose. In contrast, Coprococcus sp. strain L2-50 is a net producer of acetate and possessed detectable butyrate kinase, acetate kinase, and butyryl-CoA:acetate-CoA transferase activities. These results demonstrate that different functionally distinct groups of butyrate-producing bacteria are present in the human large intestine. PMID:12324374

Liveness-enforcing supervisors synthesis for a class of generalised Petri nets based on two-stage deadlock control and mathematical programming

NASA Astrophysics Data System (ADS)

Zhao, Mi; Hou, Yifan; Liu, Ding

2010-10-01

In this article we deal with deadlock prevention problems for S4PR, a class of generalised Petri nets, which can well model a large class of flexible manufacturing systems where deadlocks are caused by insufficiently marked siphons. We present a deadlock prevention methodology that is an iterative approach consisting of two stages. The first one is called siphon control, which is to add for each insufficiently marked minimal siphon a control place to the original net. Its objective is to prevent a minimal siphon from being insufficiently marked. The second one, called control-induced siphon control, is to add a control place to the augmented net with its output arcs connecting to the source transitions, which assures that there are no new insufficiently marked siphons generated. At each iteration, a mixed integer programming approach is adopted for generalised Petri nets to obtain an insufficiently marked minimal siphon from the maximal deadly siphon. This way complete siphon enumeration is avoided that is much more time-consuming for a sizeable plant model than the proposed method. The relation of the proposed method and the liveness and reversibility of the controlled net is obtained. Examples are presented to demonstrate the presented method.

Two-stream Convolutional Neural Network for Methane Emissions Quantification

NASA Astrophysics Data System (ADS)

Wang, J.; Ravikumar, A. P.; McGuire, M.; Bell, C.; Tchapmi, L. P.; Brandt, A. R.

2017-12-01

Methane, a key component of natural gas, has a 25x higher global warming potential than carbon dioxide on a 100-year basis. Accurately monitoring and mitigating methane emissions require cost-effective detection and quantification technologies. Optical gas imaging, one of the most commonly used leak detection technology, adopted by Environmental Protection Agency, cannot estimate leak-sizes. In this work, we harness advances in computer science to allow for rapid and automatic leak quantification. Particularly, we utilize two-stream deep Convolutional Networks (ConvNets) to estimate leak-size by capturing complementary spatial information from still plume frames, and temporal information from plume motion between frames. We build large leak datasets for training and evaluating purposes by collecting about 20 videos (i.e. 397,400 frames) of leaks. The videos were recorded at six distances from the source, covering 10 -60 ft. Leak sources included natural gas well-heads, separators, and tanks. All frames were labeled with a true leak size, which has eight levels ranging from 0 to 140 MCFH. Preliminary analysis shows that two-stream ConvNets provides significant accuracy advantage over single steam ConvNets. Spatial stream ConvNet can achieve an accuracy of 65.2%, by extracting important features, including texture, plume area, and pattern. Temporal stream, fed by the results of optical flow analysis, results in an accuracy of 58.3%. The integration of the two-stream ConvNets gives a combined accuracy of 77.6%. For future work, we will split the training and testing datasets in distinct ways in order to test the generalization of the algorithm for different leak sources. Several analytic metrics, including confusion matrix and visualization of key features, will be used to understand accuracy rates and occurrences of false positives. The quantification algorithm can help to find and fix super-emitters, and improve the cost-effectiveness of leak detection and repair programs.

Net Thermal Radiation in the Atmosphere of Venus

NASA Technical Reports Server (NTRS)

Revercomb, H. E.; Sromovsky, L. A.; Suomi, V. E.; Boese, R. W.

1985-01-01

The four entry probes of the Pioneer Venus mission measured the radiative net flux in the atmosphere of Venus at latitudes of 60 deg. N, 31 deg. S, 27 deg. S, and 4 deg. N. The three higher latitude probes carried instruments (small probe net flux radiometers; SNFR) with external sensors. The measured SNFR net fluxes are too large below the clouds, but an error source and correction scheme have been found (H. E. Revercomb, L. A. Sromovsky, and V. E. Suomi, 1982, Icarus 52, 279-300). The near-equatorial probe carried an infrared radiometer (LIR) which viewed the atmosphere through a window in the probe. The LIR measurements are reasonable in the clouds, but increase to physically unreasonable levels shortly below the clouds. The probable error source and a correction procedure are identified. Three main conclusions can be drawn from comparisons of the four corrected flux profiles with radiative transfer calculations: (1) thermal net fluxes for the sounder probe do not require a reduction in the Mode 3 number density as has been suggested by O.B. Toon, B. Ragent, D. Colburn, J. Blamont, and C. Cot (1964. Icarus 37, 143-160), but the probe measurements as a whole are most consistent with a significantly reduced mode 3 contribution to the cloud opacity; (2) at all probe sites, the fluxes imply that the upper cloud contains a yet undetected source of IR opacity; and (3) beneath the clouds the fluxes at a given altitude increase with latitude, suggesting greater IR cooling below the clouds a( high latitudes and water vapor mixing ratios of about 2-5 x 10(exp -5) near 6 deg., 2-5 x 10(exp -11) near 30 deg., and less than 5 x 10(exp -4 ) near the equator. The suggested latitudinal variation of IR cooling is consistent with descending motions at high latitudes, and it is speculated that it could provide an important additional drive for the general circulation.

Year-round Regional CO2 Fluxes from Boreal and Tundra Ecosystems in Alaska

NASA Astrophysics Data System (ADS)

Commane, R.; Lindaas, J.; Benmergui, J. S.; Luus, K. A.; Chang, R. Y. W.; Daube, B. C.; Euskirchen, E. S.; Henderson, J.; Karion, A.; Miller, J. B.; Miller, S. M.; Parazoo, N.; Randerson, J. T.; Sweeney, C.; Tans, P. P.; Thoning, K. W.; Veraverbeke, S.; Miller, C. E.; Wofsy, S. C.

2016-12-01

High-latitude ecosystems could release large amounts of carbon dioxide (CO2) to the atmosphere in a warmer climate. We derive temporally and spatially resolved year-round CO2 fluxes in Alaska from a synthesis of airborne and tower CO2 observations in 2012-2014. We find that tundra ecosystems were net sources of atmospheric CO2. We discuss these flux estimates in the context of long-term CO2 measurements at Barrow, AK, to asses the long term trend in carbon fluxes in the Arctic. Many Earth System Models incorrectly simulate net carbon uptake in Alaska presently. Our results imply that annual net emission of CO2 to the atmosphere may have increased markedly in this region of the Arctic in response to warming climate, supporting the view that climate-carbon feedback is strongly positive in the high Arctic.

BASiNET-BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification.

PubMed

Ito, Eric Augusto; Katahira, Isaque; Vicente, Fábio Fernandes da Rocha; Pereira, Luiz Filipe Protasio; Lopes, Fabrício Martins

2018-06-05

With the emergence of Next Generation Sequencing (NGS) technologies, a large volume of sequence data in particular de novo sequencing was rapidly produced at relatively low costs. In this context, computational tools are increasingly important to assist in the identification of relevant information to understand the functioning of organisms. This work introduces BASiNET, an alignment-free tool for classifying biological sequences based on the feature extraction from complex network measurements. The method initially transform the sequences and represents them as complex networks. Then it extracts topological measures and constructs a feature vector that is used to classify the sequences. The method was evaluated in the classification of coding and non-coding RNAs of 13 species and compared to the CNCI, PLEK and CPC2 methods. BASiNET outperformed all compared methods in all adopted organisms and datasets. BASiNET have classified sequences in all organisms with high accuracy and low standard deviation, showing that the method is robust and non-biased by the organism. The proposed methodology is implemented in open source in R language and freely available for download at https://cran.r-project.org/package=BASiNET.

How reservoirs alter drinking water quality: Organic matter sources, sinks, and transformations

USGS Publications Warehouse

Kraus, Tamara E.C.; Bergamaschi, Brian A.; Hernes, Peter J.; Doctor, Daniel H.; Kendall, Carol; Downing, Bryan D.; Losee, Richard F.

2011-01-01

Within reservoirs, production, transformation, and loss of dissolved organic matter (DOM) occur simultaneously. While the balance between production and loss determines whether a reservoir is a net sink or source of DOM, changes in chemical composition are also important because they affect DOM reactivity with respect to disinfection by-product (DBP) formation. The composition of the DOM pool also provides insight into DOM sources and processing, which can inform reservoir management. We examined the concentration and composition of DOM in San Luis Reservoir, a large off-stream impoundment of the California State Water Project. We used a wide array of DOM chemical tracers including dissolved organic carbon (DOC) concentration, trihalomethane and haloacetic acid formation potentials (THMFP and HAAFP, respectively), absorbance properties, isotopic composition, lignin phenol content, and structural groupings determined by 13C nuclear magnetic resonance (NMR). There were periods when the reservoir was a net source of DOC due to the predominance of algal production (summer), a net sink due to the predominance of degradation (fall–winter), and balanced between production and consumption (spring). Despite only moderate variation in bulk DOC concentration (3.0–3.6 mg C/L), changes in DOM composition indicated that terrestrial-derived material entering the reservoir was being degraded and replaced by aquatic-derived DOM produced within the reservoir. Substantial changes in the propensity of the DOM pool to form THMs and HAAs illustrate that the DBP precursor pool was not directly coupled to bulk DOC concentration and indicate that algal production is an important source of DBP precursors. Results suggest reservoirs have the potential to attenuate DOM amount and reactivity with respect to DBP precursors via degradative processes; however, these benefits can be decreased or even negated by the production of algal-derived DOM.

Cyclic variations in nitrogen uptake rate of soybean plants: ammonium as a nitrogen source

NASA Technical Reports Server (NTRS)

Henry, L. T.; Raper, C. D. Jr

1989-01-01

When NO3- is the sole nitrogen source in flowing solution culture, the net rate of nitrogen uptake by nonnodulated soybean (Glycine max L. Merr. cv Ransom) plants cycles between maxima and minima with a periodicity of oscillation that corresponds with the interval of leaf emergence. Since soybean plants accumulate similar quantities of nitrogen when either NH4+ or NO3- is the sole source in solution culture controlled at pH 6.0, an experiment was conducted to determine if the oscillations in net rate of nitrogen uptake also occur when NH4+ is the nitrogen source. During a 21-day period of vegetative development, net uptake of NH4+ was measured daily by ion chromatography as depletion of NH4+ from a replenished nutrient solution containing 1.0 millimolar NH4+. The net rate of NH4+ uptake oscillated with a periodicity that was similar to the interval of leaf emergence. Instances of negative net rates of uptake indicate that the transition between maxima and minima involved changes in influx and efflux components of net NH4+ uptake.

North American coastal carbon stocks and exchanges among the coupled ecosystems of tidal wetlands and estuaries

NASA Astrophysics Data System (ADS)

Windham-Myers, L.; Cai, W. J.

2017-12-01

The development of the 2nd State of the Carbon Cycle Report (SOCCR-2) has recognized a significant role of aquatic ecosystems, including coastal zones, in reconciling some of the gaps associated with the North American carbon (C) budget. Along with a large community of coauthors, we report major C stocks and fluxes for tidal wetlands and estuaries of Canada, Mexico and the United States. We find divergent patterns between these coupled ecosystems, with tidal wetlands largely serving as CO2 sinks (net autotrophic), and open-water estuaries largely serving as CO2 sources (net heterotrophic). We summarized measurements across 4 continental regions - East Coast, Gulf of Mexico, West Coast, and High Latitudes - to assess spatial variability and datagaps in our understanding of coastal C cycling. Subtracting estuarine outgassing of 10 ± 10 Tg C yr-1 from the tidal wetland uptake of 23 ± 10 Tg C yr-1 leaves a net uptake of the combined system of 13 ± 14 Tg C yr-1. High uncertainty for net atmospheric C exchange in this combined coastal system is further complicated by spatially and temporally dynamic boundaries, as well as terrestrial C sources. Tidal wetlands are among the most productive ecosystems on earth and are capable of continuously accumulating organic C in their sediments as a result of environmental conditions that inhibit organic matter decomposition. Estuaries have more interannual variability in C dynamics than those of tidal wetlands, reflecting the estuarine balance of exchanges with terrestrial watersheds, tidal wetlands, and the continental shelf. Whereas tidal, subtidal and estuarine maps are of limited accuracy at larger scales, North America likely represents less than 1/10 of global distributions of coastal wetland habitats. Coupled land-ocean C flux models are increasingly robust but lacking much of the data needed for parameterization and validation. Accurate boundary maps and synoptic monitoring data on air-water CO2 exchange may be developed through novel remote-sensing products. Improved mapping and monitoring data at local-regional scales remains a necessary improvement to reduce the uncertainty associated with coastal zone C cycling and to understand potential land management implications.

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments

PubMed Central

Thomas, Brandon R.; Chylek, Lily A.; Colvin, Joshua; Sirimulla, Suman; Clayton, Andrew H.A.; Hlavacek, William S.; Posner, Richard G.

2016-01-01

Summary: Rule-based models are analyzed with specialized simulators, such as those provided by the BioNetGen and NFsim open-source software packages. Here, we present BioNetFit, a general-purpose fitting tool that is compatible with BioNetGen and NFsim. BioNetFit is designed to take advantage of distributed computing resources. This feature facilitates fitting (i.e. optimization of parameter values for consistency with data) when simulations are computationally expensive. Availability and implementation: BioNetFit can be used on stand-alone Mac, Windows/Cygwin, and Linux platforms and on Linux-based clusters running SLURM, Torque/PBS, or SGE. The BioNetFit source code (Perl) is freely available (http://bionetfit.nau.edu). Supplementary information: Supplementary data are available at Bioinformatics online. Contact: bionetgen.help@gmail.com PMID:26556387

Relative intensity noise transfer of large-bandwidth pump lasers in Raman fiber amplifiers

NASA Astrophysics Data System (ADS)

Keita, Kafing; Delaye, Philippe; Frey, Robert; Roosen, Gérald

2006-12-01

A theoretical analysis of the Raman amplification in optical fibers and the pump-to-signal relative intensity noise (RIN) transfer has been performed in the spectral domain. An efficient Raman amplification of a monochromatic signal beam by a large-bandwidth pump beam has been demonstrated for a pump bandwidth much smaller than the Raman linewidth. Under the same approximation the pump-to-signal RIN transfer has been calculated in both cases of copropagating and counterpropagating beams in the two limiting cases of modulated monochromatic and smooth-profile large-bandwidth pump beams. At low frequencies the excess of noise evidenced in the case of a modulated monochromatic pump beam did not exist in the case of large-bandwidth pseudoincoherent sources. As this noise reduction can be as large as 13 dB for a 40 dB net gain of the amplifier, such incoherent pumping sources must be considered for the purpose of low-noise Raman amplifiers.

Global Infrasound Association Based on Probabilistic Clutter Categorization

NASA Astrophysics Data System (ADS)

Arora, N. S.; Mialle, P.

2015-12-01

The IDC collects waveforms from a global network of infrasound sensors maintained by the IMS, and automatically detects signal onsets and associates them to form event hypotheses. However, a large number of signal onsets are due to local clutter sources such as microbaroms (from standing waves in the oceans), waterfalls, dams, gas flares, surf (ocean breaking waves) etc. These sources are either too diffuse or too local to form events. Worse still, the repetitive nature of this clutter leads to a large number of false event hypotheses due to the random matching of clutter at multiple stations. Previous studies, for example [1], have worked on categorization of clutter using long term trends on detection azimuth, frequency, and amplitude at each station. In this work we continue the same line of reasoning to build a probabilistic model of clutter that is used as part of NET-VISA [2], a Bayesian approach to network processing. The resulting model is a fusion of seismic, hydro-acoustic and infrasound processing built on a unified probabilistic framework. Notes: The attached figure shows all the unassociated arrivals detected at IMS station I09BR for 2012 distributed by azimuth and center frequency. (The title displays the bandwidth of the kernel density estimate along the azimuth and frequency dimensions).This plot shows multiple micro-barom sources as well as other sources of infrasound clutter. A diverse clutter-field such as this one is quite common for most IMS infrasound stations, and it highlights the dangers of forming events without due consideration of this source of noise. References: [1] Infrasound categorization Towards a statistics-based approach. J. Vergoz, P. Gaillard, A. Le Pichon, N. Brachet, and L. Ceranna. ITW 2011 [2] NET-VISA: Network Processing Vertically Integrated Seismic Analysis. N. S. Arora, S. Russell, and E. Sudderth. BSSA 2013.

Net energy ratio for the production of steam pretreated biomass-based pellets

DOE PAGES

Shahrukh, Hassan; Oyedun, Adetoyese Olajire; Kumar, Amit; ...

2015-06-21

In this study, a process model was developed to determine the net energy ratio (NER) for both regular and steam-pretreated pellet production from ligno-cellulosic biomass. NER is a ratio of the net energy output to the total net energy input from non-renewable energy source into the system. Scenarios were developed to measure the effect of temperature and level of steam pretreatment on the NER of both production processes. The NER for the base case at 6 kg h –1 is 1.29 and 5.0 for steam-pretreated and regular pellet production respectively. However, at the large scale NER would improve. The majormore » factor for NER is energy for steam and drying unit. The sensitivity analysis for the model shows that the optimum temperature for steam pretreatment is 200 °C with 50% pretreatment (Steam pretreating 50% feed stock, while the rest is undergoing regular pelletization). Uncertainty result for steam pretreated and regular pellet is 1.35 ± 0.09 and 4.52 ± 0.34 respectively.« less

26 CFR 1.904(f)-2 - Recapture of overall foreign losses.

Code of Federal Regulations, 2011 CFR

2011-04-01

... certain foreign source gain as United States source gain; and (ii) Section 904(b)(2) and the regulations... capital gains and losses. (c) Section 904(f)(1) recapture—(1) [Reserved] For further guidance, see § 1.904... limitation as follows: Foreign source taxable income other than net capital gain $720 Foreign source net...

26 CFR 1.904(f)-2 - Recapture of overall foreign losses.

Code of Federal Regulations, 2013 CFR

2013-04-01

... certain foreign source gain as United States source gain; and (ii) Section 904(b)(2) and the regulations... capital gains and losses. (c) Section 904(f)(1) recapture—(1)In general. In a taxable year in which a... limitation as follows: Foreign source taxable income other than net capital gain $720 Foreign source net...

26 CFR 1.904(f)-2 - Recapture of overall foreign losses.

Code of Federal Regulations, 2012 CFR

2012-04-01

... certain foreign source gain as United States source gain; and (ii) Section 904(b)(2) and the regulations... capital gains and losses. (c) Section 904(f)(1) recapture—(1) [Reserved] For further guidance, see § 1.904... limitation as follows: Foreign source taxable income other than net capital gain $720 Foreign source net...

26 CFR 1.904(f)-2 - Recapture of overall foreign losses.

Code of Federal Regulations, 2014 CFR

2014-04-01

... certain foreign source gain as United States source gain; and (ii) Section 904(b)(2) and the regulations... capital gains and losses. (c) Section 904(f)(1) recapture—(1)In general. In a taxable year in which a... limitation as follows: Foreign source taxable income other than net capital gain $720 Foreign source net...

NutrientNet: An Internet-Based Approach to Teaching Market-Based Policy for Environmental Management

ERIC Educational Resources Information Center

Nguyen, To N.; Woodward, Richard T.

2009-01-01

NutrientNet is an Internet-based environment in which a class can simulate a market-based approach for improving water quality. In NutrientNet, each student receives a role as either a point source or a nonpoint source polluter, and then the participants are allowed to trade water quality credits to cost-effectively reduce pollution in a…

Contribution of Doñana Wetlands to Carbon Sequestration

PubMed Central

Morris, Edward P.; Flecha, Susana; Figuerola, Jordi; Costas, Eduardo; Navarro, Gabriel; Ruiz, Javier; Rodriguez, Pablo; Huertas, Emma

2013-01-01

Inland and transitional aquatic systems play an important role in global carbon (C) cycling. Yet, the C dynamics of wetlands and floodplains are poorly defined and field data is scarce. Air-water fluxes in the wetlands of Doñana Natural Area (SW Spain) were examined by measuring alkalinity, pH and other physiochemical parameters in a range of water bodies during 2010–2011. Areal fluxes were calculated and, using remote sensing, an estimate of the contribution of aquatic habitats to gaseous transport was derived. Semi-permanent ponds adjacent to the large Guadalquivir estuary acted as mild sinks, whilst temporal wetlands were strong sources of (−0.8 and 36.3 ). Fluxes in semi-permanent streams and ponds changed seasonally; acting as sources in spring-winter and mild sinks in autumn (16.7 and −1.2 ). Overall, Doñana's water bodies were a net annual source of (5.2 ). Up–scaling clarified the overwhelming contribution of seasonal flooding and allochthonous organic matter inputs in determining regional air-water gaseous transport (13.1 ). Nevertheless, this estimate is about 6 times < local marsh net primary production, suggesting the system acts as an annual net sink. Initial indications suggest longer hydroperiods may favour autochthonous C capture by phytoplankton. Direct anthropogenic impacts have reduced the hydroperiod in Doñana and this maybe exacerbated by climate change (less rainfall and more evaporation), suggesting potential for the modification of C sequestration. PMID:23977044

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments.

PubMed

Thomas, Brandon R; Chylek, Lily A; Colvin, Joshua; Sirimulla, Suman; Clayton, Andrew H A; Hlavacek, William S; Posner, Richard G

2016-03-01

Rule-based models are analyzed with specialized simulators, such as those provided by the BioNetGen and NFsim open-source software packages. Here, we present BioNetFit, a general-purpose fitting tool that is compatible with BioNetGen and NFsim. BioNetFit is designed to take advantage of distributed computing resources. This feature facilitates fitting (i.e. optimization of parameter values for consistency with data) when simulations are computationally expensive. BioNetFit can be used on stand-alone Mac, Windows/Cygwin, and Linux platforms and on Linux-based clusters running SLURM, Torque/PBS, or SGE. The BioNetFit source code (Perl) is freely available (http://bionetfit.nau.edu). Supplementary data are available at Bioinformatics online. bionetgen.help@gmail.com. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Duplicate Health Insurance Coverage: Determinants of Variation Across States

PubMed Central

Luft, Harold S.; Maerki, Susan C.

1982-01-01

Although it is recognized that many people have duplicate private health insurance coverage, either through separate purchase or as health benefits in multi-earner families, there has been little analysis of the factors determining duplicate coverage rates. A new data source, the Survey of Income and Education, offers a comparison with the only previous source of state level data, the estimates from the Health Insurance Association of America. The R2 between the two sets is only .3 and certain problems can be traced to the methodology underlying the HIAA figures. Using figures for gross and net coverage, the ratio of total policies to people with private coverage ranges from .94 in Utah to 1.53 in Illinois. Measures of industry distribution, per capita income and employment explain a large portion of the variance, but it appears that these factors operate in opposite directions for group and non-group policies. Similar sociodemographic variables also explain net coverage. These findings have substantial implications for research and the structuring of employee health benefits. PMID:10309638

The use of open source electronic health records within the federal safety net.

PubMed

Goldwater, Jason C; Kwon, Nancy J; Nathanson, Ashley; Muckle, Alison E; Brown, Alexa; Cornejo, Kerri

2014-01-01

To conduct a federally funded study that examines the acquisition, implementation and operation of open source electronic health records (EHR) within safety net medical settings, such as federally qualified health centers (FQHC). The study was conducted by the National Opinion Research Center (NORC) at the University of Chicago from April to September 2010. The NORC team undertook a comprehensive environmental scan, including a literature review, a dozen key informant interviews using a semistructured protocol, and a series of site visits to West Virginia, California and Arizona FQHC that were currently using an open source EHR. Five of the six sites that were chosen as part of the study found a number of advantages in the use of their open source EHR system, such as utilizing a large community of users and developers to modify their EHR to fit the needs of their provider and patient communities, and lower acquisition and implementation costs as compared to a commercial system. Despite these advantages, many of the informants and site visit participants felt that widespread dissemination and use of open source was restrained due to a negative connotation regarding this type of software. In addition, a number of participants stated that there is a necessary level of technical acumen needed within the FQHC to make an open source EHR effective. An open source EHR provides advantages for FQHC that have limited resources to acquire and implement an EHR, but additional study is needed to evaluate its overall effectiveness.

Stratification of a closed region containing two buoyancy sources

NASA Astrophysics Data System (ADS)

Thompson, Andrew; Linden, Paul

2005-11-01

Many closed systems such as lakes, ocean basins, rooms etc. have inputs of buoyancy at different levels. We address the question of how the resulting stratification depends on the location of these sources. For example a lake is heated and cooled at the surface, while for a room cool air may be applied at the ceiling but the heat source may be a person standing on the floor. We present an experimental study of convection in a finite box in which we systematically vary the vertical location of two well-separated, constant buoyancy sources. We specifically consider the case of a dense source and a light source so that there is no net buoyancy flux into the tank. We study the development of the large-time stratification in the tank, which falls between one of two limits. When the location of the dense source is significantly higher than the light source, the fluid is well mixed and the system remains largely unstratified. When the location of the light source is significantly higher than the dense source, a two- layer stratification develops. We find that the circulation pattern is dominated by counter-flowing shear layers (Wong, Griffiths & Hughes, 2001), whose number and strength are strongly influenced by the buoyancy source locations. The shear layers are the primary means of communication between the plumes and thus play a large role in the resulting stratification. We support our findings with a simple numerical model.

The impacts of tropical cyclones on the net carbon balance of eastern US forests (1851-2000)

NASA Astrophysics Data System (ADS)

Fisk, J. P.; Hurtt, G. C.; Chambers, J. Q.; Zeng, H.; Dolan, K. A.; Negrón-Juárez, R. I.

2013-12-01

In temperate forests of the eastern US, tropical cyclones are a principal agent of catastrophic wind damage, with dramatic impacts on the structure and functioning of forests. Substantial progress has been made to quantify forest damage and resulting gross carbon emissions from tropical cyclones. However, the net effect of storms on the carbon balance of forests depends not only on the biomass lost in single events, but also on the uptake during recovery from a mosaic of past events. This study estimates the net impacts of tropical cyclones on the carbon balance of US forests over the period 1851-2000. To track both disturbance and recovery and to isolate the effects of storms, a modeling framework is used combining gridded historical estimates of mortality and damage with a mechanistic model using an ensemble approach. The net effect of tropical cyclones on the carbon balance is shown to depend strongly on the spatial and temporal scales of analysis. On average, tropical cyclones contribute a net carbon source over latter half of the 19th century. However, throughout much of the 20th century a regional carbon sink is estimated resulting from periods of forest recovery exceeding damage. The large-scale net annual flux resulting from tropical cyclones varies by up to 50 Tg C yr-1, an amount equivalent to 17%-36% of the US forest carbon sink.

Tropical forests are a net carbon source based on aboveground measurements of gain and loss

NASA Astrophysics Data System (ADS)

Baccini, A.; Walker, W.; Carvalho, L.; Farina, M.; Sulla-Menashe, D.; Houghton, R. A.

2017-10-01

The carbon balance of tropical ecosystems remains uncertain, with top-down atmospheric studies suggesting an overall sink and bottom-up ecological approaches indicating a modest net source. Here we use 12 years (2003 to 2014) of MODIS pantropical satellite data to quantify net annual changes in the aboveground carbon density of tropical woody live vegetation, providing direct, measurement-based evidence that the world’s tropical forests are a net carbon source of 425.2 ± 92.0 teragrams of carbon per year (Tg C year-1). This net release of carbon consists of losses of 861.7 ± 80.2 Tg C year-1 and gains of 436.5 ± 31.0 Tg C year-1. Gains result from forest growth; losses result from deforestation and from reductions in carbon density within standing forests (degradation or disturbance), with the latter accounting for 68.9% of overall losses.

How Reservoirs Alter DOM Amount and Composition: Sources, Sinks, and Transformations

NASA Astrophysics Data System (ADS)

Kraus, T. E.; Bergamaschi, B. A.; Hernes, P. J.; Doctor, D. H.; Kendall, C.; Losee, R. F.; Downing, B. D.

2011-12-01

Reservoirs are critical components of many water supply systems as they allow the storage of water when supply exceeds demand. However, during water storage biogeochemical processes can alter both the amount and composition of dissolved organic matter (DOM), which can in turn affect water quality. While the balance between production and loss determines whether a reservoir is a net sink or source of DOM, changes in chemical composition are also relevant as they affect DOM reactivity (e.g. persistence in the environment, removability during coagulation treatment, and potential to form toxic compounds during drinking water treatment). The composition of the DOM pool also provides information about the DOM sources and processing, which can inform reservoir management. We examined the concentration and composition of DOM in San Luis Reservoir (SLR), a large off-stream impoundment of the California State Water Project. We used an array of DOM chemical tracers including dissolved organic carbon (DOC) concentration, optical properties, isotopic composition, lignin phenol content, and structural groupings determined by 13C NMR. There were periods when the reservoir was i) a net source of DOM due to the predominance of algal production (summer), ii) a net sink due to the predominance of degradation (fall/winter), and iii) balanced between production and consumption (spring). Despite only moderate variation in bulk DOC concentration (3.0-3.6 mg C/L), substantial changes in DOM composition indicated that terrestrial-derived material entering the reservoir was being degraded and replaced by aquatic-derived DOM produced within the reservoir. Results suggest reservoirs have the potential to reduce DOM amount and reactivity via degradative processes, however, these benefits can be decreased or even negated by the production of algal-derived DOM.

Source Process of the 2007 Niigata-ken Chuetsu-oki Earthquake Derived from Near-fault Strong Motion Data

NASA Astrophysics Data System (ADS)

Aoi, S.; Sekiguchi, H.; Morikawa, N.; Ozawa, T.; Kunugi, T.; Shirasaka, M.

2007-12-01

The 2007 Niigata-ken Chuetsu-oki earthquake occurred on July 16th, 2007, 10:13 JST. We performed a multi- time window linear waveform inversion analysis (Hartzell and Heaton, 1983) to estimate the rupture process from the near fault strong motion data of 14 stations from K-NET, KiK-net, F-net, JMA, and Niigata prefecture. The fault plane for the mainshock has not been clearly determined yet from the aftershock distribution, so that we performed two waveform inversions for north-west dipping fault (Model A) and south-east dipping fault (Model B). Their strike, dip, and rake are set to those of the moment tensor solutions by F-net. Fault plane model of 30 km length by 24 km width is set to cover aftershock distribution within 24 hours after the mainshock. Theoretical Green's functions were calculated by the discrete wavenumber method (Bouchon, 1981) and the R/T matrix method (Kennett, 1983) with the different stratified medium for each station based on the velocity structure including the information form the reflection survey and borehole logging data. Convolution of moving dislocation was introduced to represent the rupture propagation in an each subfault (Sekiguchi et al., 2002). The observed acceleration records were integrated into velocity except of F-net velocity data, and bandpass filtered between 0.1 and 1.0 Hz. We solved least-squared equation to obtain slip amount of each time window on each subfault to minimize squared residual of the waveform fitting between observed and synthetic waveforms. Both models provide moment magnitudes of 6.7. Regarding Model A, we obtained large slip in the south-west deeper part of the rupture starting point, which is close to Kashiwazaki-city. The second or third velocity pulses of observed velocity waveforms seem to be composed of slip from the asperity. Regarding Model B, we obtained large slip in the southwest shallower part of the rupture starting point, which is also close to Kashiwazaki-city. In both models, we found small slip near the rupture starting point, and largest slip at about ten kilometer in the south-west of the rupture starting point with the maximum slip of 2.3 and 2.5 m for Models A and B, respectively. The difference of the residual between observed and synthetic waveforms for both models is not significant, therefore it is difficult to conclude which fault plane is appropriate to explain. The estimated large-slip regions in the inverted source models with the Models A and B are located near the cross point of the two fault plane models, which should have similar radiation pattern. This situation may be one of the reasons why judgment of the fault plane orientation is such difficult. We need careful examinations not only strong motion data but also geodetic data to further explore the fault orientation and the source process of this earthquake.

Effects of permafrost melting on CO2 and CH4 exchange of a poorly drained black spruce lowland

USGS Publications Warehouse

Wickland, K.P.; Striegl, Robert G.; Neff, J.C.; Sachs, T.

2006-01-01

Permafrost melting is occurring in areas of the boreal forest region where large amounts of carbon (C) are stored in organic soils. We measured soil respiration, net CO2 flux, and net CH4 flux during May-September 2003 and March 2004 in a black spruce lowland in interior Alaska to better understand how permafrost thaw in poorly drained landscapes affects land-atmosphere CO2 and CH4 exchange. Sites included peat soils underlain by permafrost at ???0.4 m depth (permafrost plateau, PP), four thermokarst wetlands (TW) having no permafrost in the upper 2.2 m, and peat soils bordering the thermokarst wetlands having permafi7ost at ???0.5 in depth (thermokarst edges, TE). Soil respiration rates were not significantly different among the sites, and 5-cm soil temperature explained 50-91% of the seasonal variability in soil respiration within the sites. Groundcover vegetation photosynthesis (calculated as net CO2 minus soil respiration) was significantly different among the sites (TW > TE > PP), which can be partly attributed to the difference in photosynthetically active radiation reaching the ground at each site type. Methane emission rates were 15 to 28 times greater fi7om TW than from TE and PP. We modeled annual soil respiration and groundcover vegetation photosynthesis using soil temperature and radiation data, and CH4 flux by linear interpolation. We estimated all sites as net C gas sources to the atmosphere (not including tree CO2 uptake at PP and TE), although the ranges in estimates when accounting for errors were large enough that TE and TW may have been net C sinks. Copyright 2006 by the American Geophysical Union.

Variations of net ecosystem production due to seasonal precipitation differences in a tropical dry forest of northwest Mexico

NASA Astrophysics Data System (ADS)

Verduzco, Vivian S.; Garatuza-Payán, Jaime; Yépez, Enrico A.; Watts, Christopher J.; Rodríguez, Julio C.; Robles-Morua, Agustin; Vivoni, Enrique R.

2015-10-01

Due to their large extent and high primary productivity, tropical dry forests (TDF) are important contributors to atmospheric carbon exchanges in subtropical and tropical regions. In northwest Mexico, a bimodal precipitation regime that includes winter precipitation derived from Pacific storms and summer precipitation from the North American monsoon (NAM) couples water availability with ecosystem processes. We investigated the net ecosystem production of a TDF ecosystem using a 4.5 year record of water and carbon fluxes obtained from the eddy covariance method complemented with remotely sensed data. We identified a large CO2 efflux at the start of the summer season that is strongly related to the preceding winter precipitation and greenness. Since this CO2 efflux occurs prior to vegetation green-up, we infer that respiration is mainly due to decomposition of soil organic matter accumulated from the prior growing season. Overall, ecosystem respiration has an important effect on the net ecosystem production but can be overwhelmed by the strength of the primary productivity during the NAM. Precipitation characteristics during NAM have significant controls on sustaining carbon fixation in the TDF into the fall season. We identified that a threshold of ~350 to 400 mm of monsoon precipitation leads to a switch in the annual carbon balance in the TDF ecosystem from a net source (+102 g C/m2/yr) to a net sink (-249 g C/m2/yr). This monsoonal precipitation threshold is typically exceeded one out of every 2 years. The close coupling of winter and summer periods with respect to carbon fluxes suggests that the annual carbon balance is dependent on precipitation amounts in both seasons in TDF ecosystems.

Measurement of Urban fluxes of CO2 and water

NASA Astrophysics Data System (ADS)

Grimmond, S.; Crawford, B.; Offerle, B.; Hom, J.

2006-05-01

Measurements of surface-atmosphere fluxes of carbon dioxide (FCO2) and latent heat in urban environments are rare even though cities are a major source of atmospheric CO2 and users of water. In this paper, an overview of urban FCO2 measurements will be presented to illustrate how and where such measurements are being conducted and emerging results to date. Most of these studies have been conducted over short periods of time; few studies have considered annual sources/sinks. More investigations have been conducted, and are planned, in European cities than elsewhere, most commonly in areas of medium density urban development. The most dense urban sites are significant net sources of carbon. However, in areas where there is large amounts of vegetation present, there is a net sink of carbon during the summertime. In the second part of the presentation, more detailed attention will be directed to an ongoing measurement program in Baltimore, MD (part of the Baltimore Ecosystem Study). Eddy covariance instrumentation mounted on a tall-tower at 41.2 m has continuously measured local-scale fluxes of carbon dioxide from a suburban environment since 2001. Several features make this particular study unique: 1) for an urban area, the study site is extensively vegetated, 2) the period of record (2001-2005) is among the longest available for urban FCO2 measurements, 3) both closed-path and open-path infrared gas analyzers are used for observations, and 4) several unique data quality control and gap-filling methods have been developed for use in an urban environment. Additionally, detailed surface datasets and GIS software are used to perform flux source area analysis. Results from Baltimore indicate that FCO2 is very dependent on source area land-cover characteristics, particularly the proportion of vegetated and built surfaces. Over the course of a year, the urban surface is a strong net source of CO2, though there is considerable inter-annual variability depending on environmental conditions (e.g. average temperature, total precipitation, cicada infestation). During the growing season, there is net uptake of CO2 by the surface, but this uptake is less than in forested areas and is not enough to offset CO2 emissions for the entire year

Detection potential of the KM3NeT detector for high-energy neutrinos from the Fermi bubbles

NASA Astrophysics Data System (ADS)

KM3NeT Collaboration; Adrián-Martínez, S.; Ageron, M.; Aguilar, J. A.; Aharonian, F.; Aiello, S.; Albert, A.; Alexandri, M.; Ameli, F.; Anassontzis, E. G.; Anghinolfi, M.; Anton, G.; Anvar, S.; Ardid, M.; Assis Jesus, A.; Aubert, J.-J.; Bakker, R.; Ball, A. E.; Barbarino, G.; Barbarito, E.; Barbato, F.; Baret, B.; de Bel, M.; Belias, A.; Bellou, N.; Berbee, E.; Berkien, A.; Bersani, A.; Bertin, V.; Beurthey, S.; Biagi, S.; Bigongiari, C.; Bigourdan, B.; Billault, M.; de Boer, R.; Boer Rookhuizen, H.; Bonori, M.; Borghini, M.; Bou-Cabo, M.; Bouhadef, B.; Bourlis, G.; Bouwhuis, M.; Bradbury, S.; Brown, A.; Bruni, F.; Brunner, J.; Brunoldi, M.; Busto, J.; Cacopardo, G.; Caillat, L.; Calvo Díaz-Aldagalán, D.; Calzas, A.; Canals, M.; Capone, A.; Carr, J.; Castorina, E.; Cecchini, S.; Ceres, A.; Cereseto, R.; Chaleil, Th.; Chateau, F.; Chiarusi, T.; Choqueuse, D.; Christopoulou, P. E.; Chronis, G.; Ciaffoni, O.; Circella, M.; Cocimano, R.; Cohen, F.; Colijn, F.; Coniglione, R.; Cordelli, M.; Cosquer, A.; Costa, M.; Coyle, P.; Craig, J.; Creusot, A.; Curtil, C.; D'Amico, A.; Damy, G.; De Asmundis, R.; De Bonis, G.; Decock, G.; Decowski, P.; Delagnes, E.; De Rosa, G.; Distefano, C.; Donzaud, C.; Dornic, D.; Dorosti-Hasankiadeh, Q.; Drogou, J.; Drouhin, D.; Druillole, F.; Drury, L.; Durand, D.; Durand, G. A.; Eberl, T.; Emanuele, U.; Enzenhöfer, A.; Ernenwein, J.-P.; Escoffier, S.; Espinosa, V.; Etiope, G.; Favali, P.; Felea, D.; Ferri, M.; Ferry, S.; Flaminio, V.; Folger, F.; Fotiou, A.; Fritsch, U.; Gajanana, D.; Garaguso, R.; Gasparini, G. P.; Gasparoni, F.; Gautard, V.; Gensolen, F.; Geyer, K.; Giacomelli, G.; Gialas, I.; Giordano, V.; Giraud, J.; Gizani, N.; Gleixner, A.; Gojak, C.; Gómez-González, J. P.; Graf, K.; Grasso, D.; Grimaldi, A.; Groenewegen, R.; Guédé, Z.; Guillard, G.; Guilloux, F.; Habel, R.; Hallewell, G.; van Haren, H.; van Heerwaarden, J.; Heijboer, A.; Heine, E.; Hernández-Rey, J. J.; Herold, B.; Hillebrand, T.; van de Hoek, M.; Hogenbirk, J.; Hößl, J.; Hsu, C. C.; Imbesi, M.; Jamieson, A.; Jansweijer, P.; de Jong, M.; Jouvenot, F.; Kadler, M.; Kalantar-Nayestanaki, N.; Kalekin, O.; Kappes, A.; Karolak, M.; Katz, U. F.; Kavatsyuk, O.; Keller, P.; Kiskiras, Y.; Klein, R.; Kok, H.; Kontoyiannis, H.; Kooijman, P.; Koopstra, J.; Kopper, C.; Korporaal, A.; Koske, P.; Kouchner, A.; Koutsoukos, S.; Kreykenbohm, I.; Kulikovskiy, V.; Laan, M.; La Fratta, C.; Lagier, P.; Lahmann, R.; Lamare, P.; Larosa, G.; Lattuada, D.; Leisos, A.; Lenis, D.; Leonora, E.; Le Provost, H.; Lim, G.; Llorens, C. D.; Lloret, J.; Löhner, H.; Lo Presti, D.; Lotrus, P.; Louis, F.; Lucarelli, F.; Lykousis, V.; Malyshev, D.; Mangano, S.; Marcoulaki, E. C.; Margiotta, A.; Marinaro, G.; Marinelli, A.; Mariş, O.; Markopoulos, E.; Markou, C.; Martínez-Mora, J. A.; Martini, A.; Marvaldi, J.; Masullo, R.; Maurin, G.; Migliozzi, P.; Migneco, E.; Minutoli, S.; Miraglia, A.; Mollo, C. M.; Mongelli, M.; Monmarthe, E.; Morganti, M.; Mos, S.; Motz, H.; Moudden, Y.; Mul, G.; Musico, P.; Musumeci, M.; Naumann, Ch.; Neff, M.; Nicolaou, C.; Orlando, A.; Palioselitis, D.; Papageorgiou, K.; Papaikonomou, A.; Papaleo, R.; Papazoglou, I. A.; Păvălaş, G. E.; Peek, H. Z.; Perkin, J.; Piattelli, P.; Popa, V.; Pradier, T.; Presani, E.; Priede, I. G.; Psallidas, A.; Rabouille, C.; Racca, C.; Radu, A.; Randazzo, N.; Rapidis, P. A.; Razis, P.; Real, D.; Reed, C.; Reito, S.; Resvanis, L. K.; Riccobene, G.; Richter, R.; Roensch, K.; Rolin, J.; Rose, J.; Roux, J.; Rovelli, A.; Russo, A.; Russo, G. V.; Salesa, F.; Samtleben, D.; Sapienza, P.; Schmelling, J.-W.; Schmid, J.; Schnabel, J.; Schroeder, K.; Schuller, J.-P.; Schussler, F.; Sciliberto, D.; Sedita, M.; Seitz, T.; Shanidze, R.; Simeone, F.; Siotis, I.; Sipala, V.; Sollima, C.; Sparnocchia, S.; Spies, A.; Spurio, M.; Staller, T.; Stavrakakis, S.; Stavropoulos, G.; Steijger, J.; Stolarczyk, Th.; Stransky, D.; Taiuti, M.; Taylor, A.; Thompson, L.; Timmer, P.; Tonoiu, D.; Toscano, S.; Touramanis, C.; Trasatti, L.; Traverso, P.; Trovato, A.; Tsirigotis, A.; Tzamarias, S.; Tzamariudaki, E.; Urbano, F.; Vallage, B.; Van Elewyck, V.; Vannoni, G.; Vecchi, M.; Vernin, P.; Viola, S.; Vivolo, D.; Wagner, S.; Werneke, P.; White, R. J.; Wijnker, G.; Wilms, J.; de Wolf, E.; Yepes, H.; Zhukov, V.; Zonca, E.; Zornoza, J. D.; Zúñiga, J.

2013-02-01

A recent analysis of the Fermi Large Area Telescope data provided evidence for a high-intensity emission of high-energy gamma rays with a E-2 spectrum from two large areas, spanning 50° above and below the Galactic centre (the "Fermi bubbles"). A hadronic mechanism was proposed for this gamma-ray emission making the Fermi bubbles promising source candidates of high-energy neutrino emission. In this work Monte Carlo simulations regarding the detectability of high-energy neutrinos from the Fermi bubbles with the future multi-km3 neutrino telescope KM3NeT in the Mediterranean Sea are presented. Under the hypothesis that the gamma-ray emission is completely due to hadronic processes, the results indicate that neutrinos from the bubbles could be discovered in about one year of operation, for a neutrino spectrum with a cutoff at 100 TeV and a detector with about 6 km3 of instrumented volume. The effect of a possible lower cutoff is also considered.

The effects of land cover and land use change on the contemporary carbon balance of the arctic and boreal terrestrial ecosystems of northern Eurasia

USGS Publications Warehouse

Hayes, Daniel J.; McGuire, A. David; Kicklighter, David W.; Burnside , Todd J.; Melillo, Jerry M.

2010-01-01

Recent changes in climate, disturbance regimes and land use and management systems in Northern Eurasia have the potential to disrupt the terrestrial sink of atmospheric CO2 in a way that accelerates global climate change. To determine the recent trends in the carbon balance of the arctic and boreal ecosystems of this region, we performed a retrospective analysis of terrestrial carbon dynamics across northern Eurasia over a recent 10-year period using a terrestrial biogeochemical process model. The results of the simulations suggest a shift in direction of the net flux from the terrestrial sink of earlier decades to a net source on the order of 45 Tg C year−1between 1997 and 2006. The simulation framework and subsequent analyses presented in this study attribute this shift to a large loss of carbon from boreal forest ecosystems, which experienced a trend of decreasing precipitation and a large area burned during this time period.

Net ozone photochemical production over the eastern and central North Pacific as inferred from GTE/CITE 1 observations during fall 1983

NASA Technical Reports Server (NTRS)

Chameides, W. L.; Davis, D. D.; Rodgers, M. O.; Bradshaw, J.; Sandholm, S.; Sachse, G.; Hill, G.; Gregory, G.

1987-01-01

The role of photochemistry in the budget of tropospheric ozone is studied. Measurements of O3, NO, CO, H2O vapor, and temperature obtained during the fall of 1983 during the GTE/CITE project over the eastern and central North Pacific Ocean are analyzed. The effect of altitude on the measurements is discussed. The analysis reveals a correlation between ozone and NO levels; both increase in concentration and variability with altitude. It is observed that an additional source of secondary importance associated wih CO-rich air parcels exists. A photochemical model is utilized to calculate the net rate of ozone production by photochemical reactions. A net photochemical source of ozone in the free troposphere and a net sink in the boundary layer are detected. The relation between the ozone source in the free troposphere and NO is examined. It is estimated that photochemistry provides a net ozone source to the free troposphere overlying the eastern and central North Pacific Ocean of about 5 x 10 to the 10th molecules/sq cm sec and a net sink of ozone to the boundary layer overlying this region of about 3 x 10 to the 10th molecules/sq cm sec.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shahrukh, Hassan; Oyedun, Adetoyese Olajire; Kumar, Amit

In this study, a process model was developed to determine the net energy ratio (NER) for both regular and steam-pretreated pellet production from ligno-cellulosic biomass. NER is a ratio of the net energy output to the total net energy input from non-renewable energy source into the system. Scenarios were developed to measure the effect of temperature and level of steam pretreatment on the NER of both production processes. The NER for the base case at 6 kg h –1 is 1.29 and 5.0 for steam-pretreated and regular pellet production respectively. However, at the large scale NER would improve. The majormore » factor for NER is energy for steam and drying unit. The sensitivity analysis for the model shows that the optimum temperature for steam pretreatment is 200 °C with 50% pretreatment (Steam pretreating 50% feed stock, while the rest is undergoing regular pelletization). Uncertainty result for steam pretreated and regular pellet is 1.35 ± 0.09 and 4.52 ± 0.34 respectively.« less

Long-lasting insecticidal net source, ownership and use in the context of universal coverage: a household survey in eastern Rwanda.

PubMed

Kateera, Fredrick; Ingabire, Chantal M; Hakizimana, Emmanuel; Rulisa, Alexis; Karinda, Parfait; Grobusch, Martin P; Mutesa, Leon; van Vugt, Michèle; Mens, Petra F

2015-10-06

Universal long-lasting insecticidal net (LLIN) coverage (ULC) has reduced malaria morbidity and mortality across Africa. Although information is available on bed net use in specific groups, such as pregnant women and children under 5 years, there is paucity of data on their use among the general population. Bed net source, ownership and determinants of use among individuals from households in an eastern Rwanda community 8 months after a ULC were characterized. Using household-based, interviewer-administered questionnaires and interviewer-direct observations, data on bed net source, ownership and key determinants of net use, including demographics, socio-economic status indicators, house structure characteristics, as well as of bed net quantity, type and integrity, were collected from 1400 randomly selected households. Univariate and mixed effects logistic regression modelling was done to assess for determinants of bed net use. A total of 1410 households and 6598 individuals were included in the study. Overall, the proportion of households with at least one net was 92 % while bed net usage was reported among 72 % of household members. Of the households surveyed, a total ownership of 2768 nets was reported, of which about 96 % were reportedly LLINs received from the ULC. By interviewer-physical observation, 88 % of the nets owned were of the LLIN type with the remaining 12 % did not carry any mark to enable type recognition. The odds of bed net use were significantly lower among males and individuals: from households of low socio-economic status, from households with

Prognostic factors in ectopic Cushing's syndrome due to neuroendocrine tumors: a multicenter study.

PubMed

Davi', Maria Vittoria; Cosaro, Elisa; Piacentini, Serena; Reimondo, Giuseppe; Albiger, Nora; Arnaldi, Giorgio; Faggiano, Antongiulio; Mantovani, Giovanna; Fazio, Nicola; Piovesan, Alessandro; Arvat, Emanuela; Grimaldi, Franco; Canu, Letizia; Mannelli, Massimo; Ambrogio, Alberto Giacinto; Pecori Giraldi, Francesca; Martini, Chiara; Lania, Andrea; Albertelli, Manuela; Ferone, Diego; Zatelli, Maria Chiara; Campana, Davide; Colao, Annamaria; Scaroni, Carla; Terzolo, Massimo; De Marinis, Laura; Cingarlini, Sara; Micciolo, Rocco; Francia, Giuseppe

2017-04-01

Evidence is limited regarding outcome of patients with ectopic Cushing's syndrome (ECS) due to neuroendocrine tumors (NETs). We assessed the prognostic factors affecting the survival of patients with NETs and ECS. Retrospective analysis of clinicopathological features, severity of hormonal syndrome, treatments from a large cohort of patients with NETs and ECS collected from 17 Italian centers. Our series included 110 patients, 58.2% female, with mean (±s.d.) age at diagnosis of 49.5 ± 15.9 years. The main sources of ectopic ACTH were bronchial carcinoids (BC) (40.9%), occult tumors (22.7%) and pancreatic (p)NETs (15.5%). Curative surgery was performed in 56.7% (70.2% of BC, 11% of pNETs). Overall survival was significantly higher in BC compared with pNETs and occult tumors ( P  = 0.033) and in G1-NETs compared with G2 and G3 ( P  = 0.007). Negative predictive factors for survival were severity of hypercortisolism ( P  < 0.02), hypokalemia ( P  = 0.001), diabetes mellitus ( P  = 0.0146) and distant metastases ( P  < 0.001). Improved survival was observed in patients who underwent NET removal ( P  < 0.001). Adrenalectomy improved short-term survival. Multiple factors affect prognosis of ECS patients: type of NET, grading, distant metastases, severity of hypercortisolism, hypokalemia and diabetes mellitus. BCs have the highest curative surgical rate and better survival compared with occult tumors and pNETs. Hypercortisolism plays a primary role in affecting outcome and quality of life; therefore, prompt and vigorous treatment of hormonal excess by NET surgery and medical therapy should be a key therapeutic goal. In refractory cases, adrenalectomy should be considered as it affects outcome positively at least in the first 2 years. © 2017 European Society of Endocrinology.

Rapid Increase in Ownership and Use of Long-Lasting Insecticidal Nets and Decrease in Prevalence of Malaria in Three Regional States of Ethiopia (2006-2007)

PubMed Central

Shargie, Estifanos Biru; Ngondi, Jeremiah; Graves, Patricia M.; Getachew, Asefaw; Hwang, Jimee; Gebre, Teshome; Mosher, Aryc W.; Ceccato, Pietro; Endeshaw, Tekola; Jima, Daddi; Tadesse, Zerihun; Tenaw, Eskindir; Reithinger, Richard; Emerson, Paul M.; Richards, Frank O.; Ghebreyesus, Tedros Adhanom

2010-01-01

Following recent large scale-up of malaria control interventions in Ethiopia, this study aimed to compare ownership and use of long-lasting insecticidal nets (LLIN), and the change in malaria prevalence using two population-based household surveys in three regions of the country. Each survey used multistage cluster random sampling with 25 households per cluster. Household net ownership tripled from 19.6% in 2006 to 68.4% in 2007, with mean LLIN per household increasing from 0.3 to 1.2. Net use overall more than doubled from 15.3% to 34.5%, but in households owning LLIN, use declined from 71.7% to 48.3%. Parasitemia declined from 4.1% to 0.4%. Large scale-up of net ownership over a short period of time was possible. However, a large increase in net ownership was not necessarily mirrored directly by increased net use. Better targeting of nets to malaria-risk areas and sustained behavioural change communication are needed to increase and maintain net use. PMID:20936103

Bounding the Role of Black Carbon in the Climate System: A Scientific Assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bond, Tami C.; Doherty, Sarah J.; Fahey, D. W.

2013-06-06

Black carbon aerosol plays a unique and important role in Earth’s climate system. Black carbon is a type of carbonaceous material with a unique combination of physical properties. Predominant sources are combustion related; namely, fossil fuels for transportation, solid fuels for industrial and residential uses, and open burning of biomass. Total global emissions of black carbon using bottom-up inventory methods are 7500 Gg yr-1 in the year 2000 with an uncertainty range of 2000 to 29000. This assessment provides an evaluation of black-carbon climate forcing that is comprehensive in its inclusion of all known and relevant processes and that ismore » quantitative in providing best estimates and uncertainties of the main forcing terms: direct solar absorption, influence on liquid, mixed-phase, and ice clouds, and deposition on snow and ice. These effects are calculated with models, but when possible, they are evaluated with both microphysical measurements and field observations. Global atmospheric absorption attributable to black carbon is too low in many models, and should be increased by about about 60%. After this scaling, the best estimate for the industrial-era (1750 to 2005) direct radiative forcing of black carbon is +0.43 W m-2 with 90% uncertainty bounds of (+0.17, +0.68) W m-2. Total direct forcing by all black carbon sources in the present day is estimated as +0.49 (+0.20, +0.76) W m-2. Direct radiative forcing alone does not capture important rapid adjustment mechanisms. A framework is described and used for quantifying climate forcings and their rapid responses and feedbacks. The best estimate of industrial-era (1750 to 2005) climate forcing of black carbon through all forcing mechanisms is +0.77 W m-2 with 90% uncertainty bounds of +-0.06 to +1.53 W m-2. Thus, there is a 96% probability that black carbon emissions, independent of co-emitted species, have a positive forcing and warm the climate. With a value of +0.77 W m-2, black carbon is likely the second most important individual climate-forcing agent in the industrial era, following carbon dioxide. Sources that emit black carbon also emit other short- lived species that may either cool or warm climate. Climate forcings from co-emitted species are estimated and used in the framework described herein. When the principal effects of co- emissions, including cooling agents such as sulfur dioxide, are included in net forcing, energy-related sources (fossil-fuel and biofuel) have a net climate forcing of +0.004 (-0.62 to +0.57) W m-2 during the first year after emission. For a few of these sources, such as diesel engines and possibly residential biofuels, warming is strong enough that eliminating all emissions from these sources would reduce net climate forcing (i.e., produce cooling). When open burning emissions, which emit high levels of organic matter, are included in the total, the best estimate of net industrial-era climate forcing by all black- carbon-rich sources becomes slightly negative (-0.08 W m-2 with 90% uncertainty bounds of -1.23 to +0.81 W m-2). The uncertainties in net climate forcing from black-carbon-rich sources are substantial, largely due to lack of knowledge about cloud interactions with both black carbon and co-emitted organic carbon. In prioritizing potential black-carbon mitigation actions, non-science factors, such as technical feasibility, costs, policy design, and implementation feasibility play important roles. The major sources of black carbon are presently in different stages with regard to the feasibility for near-term mitigation. This assessment, by evaluating the large number and complexity of the associated physical and radiative processes in black-carbon climate forcing, sets a baseline from which to improve future climate forcing estimates.« less

The use of open source electronic health records within the federal safety net

PubMed Central

Goldwater, Jason C; Kwon, Nancy J; Nathanson, Ashley; Muckle, Alison E; Brown, Alexa; Cornejo, Kerri

2014-01-01

Objective To conduct a federally funded study that examines the acquisition, implementation and operation of open source electronic health records (EHR) within safety net medical settings, such as federally qualified health centers (FQHC). Methods and materials The study was conducted by the National Opinion Research Center (NORC) at the University of Chicago from April to September 2010. The NORC team undertook a comprehensive environmental scan, including a literature review, a dozen key informant interviews using a semistructured protocol, and a series of site visits to West Virginia, California and Arizona FQHC that were currently using an open source EHR. Results Five of the six sites that were chosen as part of the study found a number of advantages in the use of their open source EHR system, such as utilizing a large community of users and developers to modify their EHR to fit the needs of their provider and patient communities, and lower acquisition and implementation costs as compared to a commercial system. Discussion Despite these advantages, many of the informants and site visit participants felt that widespread dissemination and use of open source was restrained due to a negative connotation regarding this type of software. In addition, a number of participants stated that there is a necessary level of technical acumen needed within the FQHC to make an open source EHR effective. Conclusions An open source EHR provides advantages for FQHC that have limited resources to acquire and implement an EHR, but additional study is needed to evaluate its overall effectiveness. PMID:23744787

Plasma source for spacecraft potential control

NASA Technical Reports Server (NTRS)

Olsen, R. C.

1983-01-01

A stable electrical ground which enables the particle spectrometers to measure the low energy particle populations was investigated and the current required to neutralize the spacecraft was measured. In addition, the plasma source for potential control (PSPO C) prevents high charging events which could affect the spacecraft electrical integrity. The plasma source must be able to emit a plasma current large enough to balance the sum of all other currents to the spacecraft. In ion thrusters, hollow cathodes provide several amperes of electron current to the discharge chamber. The PSPO C is capable of balancing the net negative currents found in eclipse charging events producing 10 to 100 microamps of electron current. The largest current required is the ion current necessary to balance the total photoelectric current.

Pacific Northwest Regional and Ecozone-scale Carbon Cycle Responses to 25 Years of Variation in Climate and Disturbance

NASA Astrophysics Data System (ADS)

Turner, D. P.; Ritts, W. D.; Kennedy, R. E.; Gray, A. N.; Yang, Z.

2015-12-01

Spatial variation in climate, soils, disturbance regime, and forest management - as well as temporal variation in weather - all influence terrestrial carbon sources and sinks. Spatially-distributed, process-based, carbon cycle simulation models provide a means to integrate information from these various influences to estimate carbon pools and flux over large domains. Here we apply the Biome-BGC model over the 4 state (OR, WA, ID, Western MT) Northwest U.S. region for the interval from 1986-2010. Landsat data was used to characterize disturbances and revealed that the overall disturbance rate on forest land across the region was 0.8 % yr-1, with 49 % as harvests, 28 % as fire, and 23 % as pest/pathogen. A large proportion of the harvested area was on private forestland (62 %) and a large proportion of total burned area was on public forestland (89 %). Net ecosystem production (NEP) for the 2006-2010 interval on forestland was predominantly positive (a carbon sink) throughout the region, with maximum values in the Coast Range, intermediate values in the Cascade Mountains, and relatively low values in the Inland Rocky Mountain ecoregions. Croplands throughout the region had consistently high NEP. Localized negative NEPs were mostly associated with recent disturbances. There was large interannual variation in regional NEP, with notably low values across the region in 2003. In all ecoregions there was a downward trend in NEP over the 25 year study period. The net ecosystem carbon balance was positive in OR, near neutral in ID and WA, and negative (a carbon source) MT. The Northwest region as a whole was a carbon sink in the 2006-2010 period.

ROOT.NET: Using ROOT from .NET languages like C# and F#

NASA Astrophysics Data System (ADS)

Watts, G.

2012-12-01

ROOT.NET provides an interface between Microsoft's Common Language Runtime (CLR) and .NET technology and the ubiquitous particle physics analysis tool, ROOT. ROOT.NET automatically generates a series of efficient wrappers around the ROOT API. Unlike pyROOT, these wrappers are statically typed and so are highly efficient as compared to the Python wrappers. The connection to .NET means that one gains access to the full series of languages developed for the CLR including functional languages like F# (based on OCaml). Many features that make ROOT objects work well in the .NET world are added (properties, IEnumerable interface, LINQ compatibility, etc.). Dynamic languages based on the CLR can be used as well, of course (Python, for example). Additionally it is now possible to access ROOT objects that are unknown to the translation tool. This poster will describe the techniques used to effect this translation, along with performance comparisons, and examples. All described source code is posted on the open source site CodePlex.

[Characteristics of water and heat fluxes and its footprint climatology on farmland in low hilly region of red soil].

PubMed

Li, Yang; Jing, Yuan Shu; Qin, Ben Ben

2017-01-01

The analysis of the characteristics and footprint climatology of farmland water and heat fluxes has great significance to strengthen regional climate resource management and improve the hydrothermal resource utilization in the region of red soil. Based on quality controlled data from large aperture scintillometer and automatic meteorological station in hilly region of red soil, this paper analyzed in detail the characteristics of farmland water and heat fluxes at different temporal scales and the corresponding source area distribution of flux measurement in the non-rainy season and crop growth period in hilly region of red soil. The results showed that the diurnal variation of water and heat fluxes showed a unimodal trend, but compared with the sunny day, the diurnal variation curves fluctuated more complicatedly on cloudy day. In the whole, either ten-day periods or month scale, the water and heat fluxes were greater in August than in September, while the net radiation flux was more distributed to latent heat exchange. The proportion of net radiation to latent heat flux decreased in September compared to August, but the sensible heat flux was vice versa. With combined effects of weather conditions (particularly wind), stability, and surface condition, the source areas of flux measurement at different temporal scales showed different distribution characteristics. Combined with the underlying surface crops, the source areas at different temporal scales also had different contribution sources.

Trends in Renewable Energy Consumption and Electricity

EIA Publications

2012-01-01

Presents a summary of the nation’s renewable energy consumption in 2010 along with detailed historical data on renewable energy consumption by energy source and end-use sector. Data presented also includes renewable energy consumption for electricity generation and for non-electric use by energy source, and net summer capacity and net generation by energy source and state. The report covers the period from 2006 through 2010.

Long term net gains in coastal blue carbon stocks: A search for terrestrial drivers?

NASA Astrophysics Data System (ADS)

Clarke, Jessica; Austin, William; Smeaton, Craig; Winterton, Cathy; Bresnan, Eileen; Davidson, Keith; Lo Giudice Cappelli Lo Giudice Cappelli, Elena; Green, Jade

2017-04-01

Peat and Organic soils covers nearly 66% of Scotland, representing over 50% of the UK's soil carbon stocks. Natural processes such as peatland erosion are accelerated by human activities, such as land management and potentially by the impacts of climate change. We present evidence from the isle of Shetland's west coast voes (sea lochs or fjords) to suggest this process may have accelerated since medieval times. This work is supported by the analyses of short sediment Craib cores (triplicate coring) recovered from 17 sites. We present preliminary chronologies supported by radiocarbon dating and sediment characteristics that highlight both changes in the rate of accumulation and source of sedimentary organic carbon to the west coast Shetland voes during the late Holocene. Scottish coastal sediments contain a significant blue carbon stock, a significant proportion of which derives directly from terrestrial sources. The loss of peatland carbon represents a potentially important contribution (i.e. net gain) in refractory carbon within the marine environment and we present preliminary estimates to assess the significance of these large scale transfers and the subsidy of carbon to the coastal ocean.

RadioSource.NET: Case-Study of a Collaborative Land-Grant Internet Audio Project.

ERIC Educational Resources Information Center

Sohar, Kathleen; Wood, Ashley M.; Ramirez, Roberto

2002-01-01

Provides a case study of RadioSource.NET, an Internet broadcasting venture developed collaboratively by land-grant university communication departments to share resources, increase online distribution, and promote access to agricultural and natural and life science research. Describes planning, marketing, and implementation processes. (Contains 18…

Navigating the Net for Grant Money.

ERIC Educational Resources Information Center

Schnitzer, Denise K.

1996-01-01

The Internet offers educators a wealth of grant resources and information on securing funds for projects. The first step is finding a funding source whose goals match those of the desired project's. Certain Net search engines have excellent capabilities. Grantsweb has accessible, organized links to federal and nonfederal grants sources. Other…

KM3NeT/ARCA sensitivity to point-like neutrino sources

NASA Astrophysics Data System (ADS)

Trovato, A.; KM3NeT Collaboration

2017-09-01

KM3NeT is network of deep-sea neutrino telescopes in the Mediterranean Sea aiming at the discovery of cosmic neutrino sources (ARCA) and the determination of the neutrino mass hierarchy (ORCA). The geographical location of KM3NeT in the Northern hemisphere allows to observe most of the Galactic Plane, including the Galactic Centre. Thanks to its good angular resolution, prime targets of KM3NeT/ARCA are point-like neutrino sources and in particular galactic sources.

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments

DOE PAGES

Thomas, Brandon R.; Chylek, Lily A.; Colvin, Joshua; ...

2015-11-09

Rule-based models are analyzed with specialized simulators, such as those provided by the BioNetGen and NFsim open-source software packages. Here in this paper, we present BioNetFit, a general-purpose fitting tool that is compatible with BioNetGen and NFsim. BioNetFit is designed to take advantage of distributed computing resources. This feature facilitates fitting (i.e. optimization of parameter values for consistency with data) when simulations are computationally expensive.

Targeting Net Zero Energy for Military Installations (Presentation)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burman, K.

2012-05-01

Targeting Net Zero Energy for Military Installations in Kaneohe Bay, Hawaii. A net zero energy installation (NZEI) is one that produces as much energy from on-site renewable sources as it consumes. NZEI assessment provides a systematic approach to energy projects.

GeoNetGIS: a Geodetic Network Geographical Information System to manage GPS networks in seismic and volcanic areas

NASA Astrophysics Data System (ADS)

Cristofoletti, P.; Esposito, A.; Anzidei, M.

2003-04-01

This paper presents the methodologies and issues involved in the use of GIS techniques to manage geodetic information derived from networks in seismic and volcanic areas. Organization and manipulation of different geodetical, geological and seismic database, give us a new challenge in interpretation of information that has several dimensions, including spatial and temporal variations, also the flexibility and brand range of tools available in GeoNetGIS, make it an attractive platform for earthquake risk assessment. During the last decade the use of geodetic networks based on the Global Positioning System, devoted to geophysical applications, especially for crustal deformation monitoring in seismic and volcanic areas, increased dramatically. The large amount of data provided by these networks, combined with different and independent observations, such as epicentre distribution of recent and historical earthquakes, geological and structural data, photo interpretation of aerial and satellite images, can aid for the detection and parameterization of seismogenic sources. In particular we applied our geodetic oriented GIS to a new GPS network recently set up and surveyed in the Central Apennine region: the CA-GeoNet. GeoNetGIS is designed to analyze in three and four dimensions GPS sources and to improve crustal deformation analysis and interpretation related with tectonic structures and seismicity. It manages many database (DBMS) consisting of different classes, such as Geodesy, Topography, Seismicity, Geology, Geography and Raster Images, administrated according to Thematic Layers. GeoNetGIS represents a powerful research tool allowing to join the analysis of all data layers to integrate the different data base which aid for the identification of the activity of known faults or structures and suggesting the new evidences of active tectonics. A new approach to data integration given by GeoNetGIS capabilities, allow us to create and deliver a wide range of maps, digital and 3-dimensional environment data analysis applications for geophysical users and civil defense companies, also distributing them on the World Wide Web or in wireless connection realized by PDA computer. It runs on powerful PC platform under Win2000 Prof OS © and based on ArcGIS 8.2 ESRI © software.

Long-period Ground Motion Simulation in the Osaka Basin during the 2011 Great Tohoku Earthquake

NASA Astrophysics Data System (ADS)

Iwata, T.; Kubo, H.; Asano, K.; Sato, K.; Aoi, S.

2014-12-01

Large amplitude long-period ground motions (1-10s) with long duration were observed in the Osaka sedimentary basin during the 2011 Tohoku earthquake (Mw9.0) and its aftershock (Ibaraki-Oki, Mw7.7), which is about 600 km away from the source regions. Sato et al. (2013) analyzed strong ground motion records from the source region to the Osaka basin and showed the following characteristics. (1) In the period range of 1 to 10s, the amplitude of horizontal components of the ground motion at the site-specific period is amplified in the Osaka basin sites. The predominant period is about 7s in the bay area where the largest pSv were observed. (2) The velocity Fourier amplitude spectra with their predominant period of around 7s are observed at the bedrock sites surrounding the Osaka basin. Those characteristics were observed during both of the mainshock and the largest aftershock. Therefore, large long-period ground motions in the Osaka basin are generated by the combination of propagation-path and basin effects. They simulated ground motions due to the largest aftershock as a simple point source model using three-dimensional FDM (GMS; Aoi and Fujiwara, 1999). They used a three-dimensional velocity structure based on the Japan Integrated Velocity Structure Model (JIVSM, Koketsu et al., 2012), with the minimum effective period of the computation of 3s. Their simulation result reproduced the observation characteristics well and it validates the applicability of the JIVSM for the long period ground motion simulation. In this study, we try to simulate long-period ground motions during the mainshock. The source model we used for the simulation is based on the SMGA model obtained by Asano and Iwata (2012). We succeed to simulate long-period ground motion propagation from Kanto area to the Osaka basin fairly well. The long-period ground motion simulations with the several Osaka basin velocity structure models are done for improving the model applicability. We used strong motion data recorded by K-NET, KiK-net and F-net of NIED, CEORKA, BRI, JMA, Osaka city waterworks bureau, and Osaka prefecture. GMS provided by NIED is used for the computation.

Tropical forests are a net carbon source based on aboveground measurements of gain and loss.

PubMed

Baccini, A; Walker, W; Carvalho, L; Farina, M; Sulla-Menashe, D; Houghton, R A

2017-10-13

The carbon balance of tropical ecosystems remains uncertain, with top-down atmospheric studies suggesting an overall sink and bottom-up ecological approaches indicating a modest net source. Here we use 12 years (2003 to 2014) of MODIS pantropical satellite data to quantify net annual changes in the aboveground carbon density of tropical woody live vegetation, providing direct, measurement-based evidence that the world's tropical forests are a net carbon source of 425.2 ± 92.0 teragrams of carbon per year (Tg C year -1 ). This net release of carbon consists of losses of 861.7 ± 80.2 Tg C year -1 and gains of 436.5 ± 31.0 Tg C year -1 Gains result from forest growth; losses result from deforestation and from reductions in carbon density within standing forests (degradation or disturbance), with the latter accounting for 68.9% of overall losses. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Contribution of acetate to butyrate formation by human faecal bacteria.

PubMed

Duncan, Sylvia H; Holtrop, Grietje; Lobley, Gerald E; Calder, A Graham; Stewart, Colin S; Flint, Harry J

2004-06-01

Acetate is normally regarded as an endproduct of anaerobic fermentation, but butyrate-producing bacteria found in the human colon can be net utilisers of acetate. The butyrate formed provides a fuel for epithelial cells of the large intestine and influences colonic health. [1-(13)C]Acetate was used to investigate the contribution of exogenous acetate to butyrate formation. Faecalibacterium prausnitzii and Roseburia spp. grown in the presence of 60 mm-acetate and 10 mm-glucose derived 85-90 % butyrate-C from external acetate. This was due to rapid interchange between extracellular acetate and intracellular acetyl-CoA, plus net acetate uptake. In contrast, a Coprococcus-related strain that is a net acetate producer derived only 28 % butyrate-C from external acetate. Different carbohydrate-derived energy sources affected butyrate formation by mixed human faecal bacteria growing in continuous or batch cultures. The ranking order of butyrate production rates was amylopectin > oat xylan > shredded wheat > inulin > pectin (continuous cultures), and inulin > amylopectin > oat xylan > shredded wheat > pectin (batch cultures). The contribution of external acetate to butyrate formation in these experiments ranged from 56 (pectin) to 90 % (xylan) in continuous cultures, and from 72 to 91 % in the batch cultures. This is consistent with a major role for bacteria related to F. prausnitzii and Roseburia spp. in butyrate formation from a range of substrates that are fermented in the large intestine. Variations in the dominant metabolic type of butyrate producer between individuals or with variations in diet are not ruled out, however, and could influence butyrate supply in the large intestine.

Ecosystem fluxes of hydrogen in a mid-latitude forest driven by soil microorganisms and plants

DOE PAGES

Meredith, Laura K.; Commane, Róisín; Keenan, Trevor F.; ...

2016-09-14

Molecular hydrogen (H 2 ) is an atmospheric trace gas with a large microbe-mediated soil sink, yet cycling of this compound throughout ecosystems is poorly understood. Measurements of the sources and sinks of H 2 in various ecosystems are sparse, resulting in large uncertainties in the global H 2 budget. Constraining the H 2 cycle is critical to understanding its role in atmospheric chemistry and climate. We measured H 2 fluxes at high frequency in a temperate mixed deciduous forest for 15 months using a tower-based flux-gradient approach to determine both the soil-atmosphere and the net ecosystem flux of H 2more » . We also found that Harvard Forest is a net H 2 sink (-1.4 ± 1.1 kg H 2  ha -1 ) with soils as the dominant H 2 sink (-2.0 ± 1.0 kg H 2  ha -1 ) and aboveground canopy emissions as the dominant H 2 source (+0.6 ± 0.8 kg H 2  ha -1 ). Aboveground emissions of H 2 were an unexpected and substantial component of the ecosystem H 2 flux, reducing net ecosystem uptake by 30% of that calculated from soil uptake alone. Soil uptake was highly seasonal (July maximum, February minimum), positively correlated with soil temperature and negatively correlated with environmental variables relevant to diffusion into soils (i.e., soil moisture, snow depth, snow density). Soil microbial H 2 uptake was correlated with rhizosphere respiration rates (r = 0.8, P  <  0.001), and H 2 metabolism yielded up to 2% of the energy gleaned by microbes from carbon substrate respiration. Here, we elucidate key processes controlling the biosphere–atmosphere exchange of H 2 and raise new questions regarding the role of aboveground biomass as a source of atmospheric H 2 and mechanisms linking soil H 2 and carbon cycling. Our results should be incorporated into modeling efforts to predict the response of the H 2 soil sink to changes in anthropogenic H 2 emissions and shifting soil conditions with climate and land-use change.« less

Ecosystem fluxes of hydrogen in a mid-latitude forest driven by soil microorganisms and plants

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meredith, Laura K.; Commane, Róisín; Keenan, Trevor F.

Molecular hydrogen (H 2 ) is an atmospheric trace gas with a large microbe-mediated soil sink, yet cycling of this compound throughout ecosystems is poorly understood. Measurements of the sources and sinks of H 2 in various ecosystems are sparse, resulting in large uncertainties in the global H 2 budget. Constraining the H 2 cycle is critical to understanding its role in atmospheric chemistry and climate. We measured H 2 fluxes at high frequency in a temperate mixed deciduous forest for 15 months using a tower-based flux-gradient approach to determine both the soil-atmosphere and the net ecosystem flux of H 2more » . We also found that Harvard Forest is a net H 2 sink (-1.4 ± 1.1 kg H 2  ha -1 ) with soils as the dominant H 2 sink (-2.0 ± 1.0 kg H 2  ha -1 ) and aboveground canopy emissions as the dominant H 2 source (+0.6 ± 0.8 kg H 2  ha -1 ). Aboveground emissions of H 2 were an unexpected and substantial component of the ecosystem H 2 flux, reducing net ecosystem uptake by 30% of that calculated from soil uptake alone. Soil uptake was highly seasonal (July maximum, February minimum), positively correlated with soil temperature and negatively correlated with environmental variables relevant to diffusion into soils (i.e., soil moisture, snow depth, snow density). Soil microbial H 2 uptake was correlated with rhizosphere respiration rates (r = 0.8, P  <  0.001), and H 2 metabolism yielded up to 2% of the energy gleaned by microbes from carbon substrate respiration. Here, we elucidate key processes controlling the biosphere–atmosphere exchange of H 2 and raise new questions regarding the role of aboveground biomass as a source of atmospheric H 2 and mechanisms linking soil H 2 and carbon cycling. Our results should be incorporated into modeling efforts to predict the response of the H 2 soil sink to changes in anthropogenic H 2 emissions and shifting soil conditions with climate and land-use change.« less

Young organic matter as a source of carbon dioxide outgassing from Amazonian rivers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayorga, E; Aufdenkampe, A K; Masiello, C A

2005-06-23

Rivers are generally supersaturated with respect to carbon dioxide, resulting in large gas evasion fluxes that can be a significant component of regional net carbon budgets. Amazonian rivers were recently shown to outgas more than ten times the amount of carbon exported to the ocean in the form of total organic carbon or dissolved inorganic carbon. High carbon dioxide concentrations in rivers originate largely from in situ respiration of organic carbon, but little agreement exists about the sources or turnover times of this carbon. Here we present results of an extensive survey of the carbon isotope composition ({sup 13}C andmore » {sup 14}C) of dissolved inorganic carbon and three size-fractions of organic carbon across the Amazonian river system. We find that respiration of contemporary organic matter (less than 5 years old) originating on land and near rivers is the dominant source of excess carbon dioxide that drives outgassing in mid-size to large rivers, although we find that bulk organic carbon fractions transported by these rivers range from tens to thousands of years in age. We therefore suggest that a small, rapidly cycling pool of organic carbon is responsible for the large carbon fluxes from land to water to atmosphere in the humid tropics.« less

The geospatial data quality REST API for primary biodiversity data

PubMed Central

Otegui, Javier; Guralnick, Robert P.

2016-01-01

Summary: We present a REST web service to assess the geospatial quality of primary biodiversity data. It enables access to basic and advanced functions to detect completeness and consistency issues as well as general errors in the provided record or set of records. The API uses JSON for data interchange and efficient parallelization techniques for fast assessments of large datasets. Availability and implementation: The Geospatial Data Quality API is part of the VertNet set of APIs. It can be accessed at http://api-geospatial.vertnet-portal.appspot.com/geospatial and is already implemented in the VertNet data portal for quality reporting. Source code is freely available under GPL license from http://www.github.com/vertnet/api-geospatial. Contact: javier.otegui@gmail.com or rguralnick@flmnh.ufl.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26833340

The geospatial data quality REST API for primary biodiversity data.

PubMed

Otegui, Javier; Guralnick, Robert P

2016-06-01

We present a REST web service to assess the geospatial quality of primary biodiversity data. It enables access to basic and advanced functions to detect completeness and consistency issues as well as general errors in the provided record or set of records. The API uses JSON for data interchange and efficient parallelization techniques for fast assessments of large datasets. The Geospatial Data Quality API is part of the VertNet set of APIs. It can be accessed at http://api-geospatial.vertnet-portal.appspot.com/geospatial and is already implemented in the VertNet data portal for quality reporting. Source code is freely available under GPL license from http://www.github.com/vertnet/api-geospatial javier.otegui@gmail.com or rguralnick@flmnh.ufl.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

A low complexity visualization tool that helps to perform complex systems analysis

NASA Astrophysics Data System (ADS)

Beiró, M. G.; Alvarez-Hamelin, J. I.; Busch, J. R.

2008-12-01

In this paper, we present an extension of large network visualization (LaNet-vi), a tool to visualize large scale networks using the k-core decomposition. One of the new features is how vertices compute their angular position. While in the later version it is done using shell clusters, in this version we use the angular coordinate of vertices in higher k-shells, and arrange the highest shell according to a cliques decomposition. The time complexity goes from O(n\\sqrt n) to O(n) upon bounds on a heavy-tailed degree distribution. The tool also performs a k-core-connectivity analysis, highlighting vertices that are not k-connected; e.g. this property is useful to measure robustness or quality of service (QoS) capabilities in communication networks. Finally, the actual version of LaNet-vi can draw labels and all the edges using transparencies, yielding an accurate visualization. Based on the obtained figure, it is possible to distinguish different sources and types of complex networks at a glance, in a sort of 'network iris-print'.

Dynamic Balancing of Isoprene Carbon Sources Reflects Photosynthetic and Photorespiratory Responses to Temperature Stress1[W][OPEN

PubMed Central

Chambers, Jeffrey; Alves, Eliane G.; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D.; Nielsen, Lars K.; Torn, Margaret S.; Vickers, Claudia E.

2014-01-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-13C]glycine (a photorespiratory intermediate) stimulated emissions of [13C1–5]isoprene and 13CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. PMID:25318937

Dynamic balancing of isoprene carbon sources reflects photosynthetic and photorespiratory responses to temperature stress.

PubMed

Jardine, Kolby; Chambers, Jeffrey; Alves, Eliane G; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D; Nielsen, Lars K; Torn, Margaret S; Vickers, Claudia E

2014-12-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-(13)C]glycine (a photorespiratory intermediate) stimulated emissions of [(13)C1-5]isoprene and (13)CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. © 2014 American Society of Plant Biologists. All Rights Reserved.

The Effect of the Immigration of Soviet Jews to Israel on Israel’s Economy and Human Resources

DTIC Science & Technology

1993-06-01

S 𔃺 0,"• The basic method will be a SWOT (strengths, weaknesses, opportunities I and threats) analysis followed by strategy formulation S suggestion...Middle east. 00 This thesis investigates the expected effects of the immigrants on the Israeli economy and society. The purpose of this analysis is...consistent source of external financing. This aid , which is especially responsive to emergencies, provides a safety net. Large funding drives were of

Implications of net energy-return-on-investment for a low-carbon energy transition

NASA Astrophysics Data System (ADS)

King, Lewis C.; van den Bergh, Jeroen C. J. M.

2018-04-01

Low-carbon energy transitions aim to stay within a carbon budget that limits potential climate change to 2 °C—or well below—through a substantial growth in renewable energy sources alongside improved energy efficiency and carbon capture and storage. Current scenarios tend to overlook their low net energy returns compared to the existing fossil fuel infrastructure. Correcting from gross to net energy, we show that a low-carbon transition would probably lead to a 24-31% decline in net energy per capita by 2050, which implies a strong reversal of the recent rising trends of 0.5% per annum. Unless vast end-use efficiency savings can be achieved in the coming decades, current lifestyles might be impaired. To maintain the present net energy returns, solar and wind renewable power sources should grow two to three times faster than in other proposals. We suggest a new indicator, `energy return on carbon', to assist in maximizing the net energy from the remaining carbon budget.

Carbon cycling under 300 years of land use change: importance of the secondary vegetation sink

USGS Publications Warehouse

Shevliakova, Elena; Pacala, Stephen W.; Malyshev, Sergey; Hurtt, George C.; Milly, P.C.D.; Caspersen, John P.; Sentman, Lori T.; Fisk, Justin P.; Wirth, Christian; Crevoisier, Cyril

2009-01-01

We have developed a dynamic land model (LM3V) able to simulate ecosystem dynamics and exchanges of water, energy, and CO2 between land and atmosphere. LM3V is specifically designed to address the consequences of land use and land management changes including cropland and pasture dynamics, shifting cultivation, logging, fire, and resulting patterns of secondary regrowth. Here we analyze the behavior of LM3V, forced with the output from the Geophysical Fluid Dynamics Laboratory (GFDL) atmospheric model AM2, observed precipitation data, and four historic scenarios of land use change for 1700-2000. Our analysis suggests a net terrestrial carbon source due to land use activities from 1.1 to 1.3 GtC/a during the 1990s, where the range is due to the difference in the historic cropland distribution. This magnitude is substantially smaller than previous estimates from other models, largely due to our estimates of a secondary vegetation sink of 0.35 to 0.6 GtC/a in the 1990s and decelerating agricultural land clearing since the 1960s. For the 1990s, our estimates for the pastures' carbon flux vary from a source of 0.37 to a sink of 0.15 GtC/a, and for the croplands our model shows a carbon source of 0.6 to 0.9 GtC/a. Our process-based model suggests a smaller net deforestation source than earlier bookkeeping models because it accounts for decelerated net conversion of primary forest to agriculture and for stronger secondary vegetation regrowth in tropical regions. The overall uncertainty is likely to be higher than the range reported here because of uncertainty in the biomass recovery under changing ambient conditions, including atmospheric CO2 concentration, nutrients availability, and climate. Copyright 2009 by the American Geophysical Union.

Reconciling estimates of the contemporary North American carbon balance among terrestrial biosphere models, atmospheric inversions, and a new approach for estimating net ecosystem exchange from inventory-based data

USGS Publications Warehouse

Hayes, Daniel J.; Turner, David P.; Stinson, Graham; McGuire, A. David; Wei, Yaxing; West, Tristram O.; Heath, Linda S.; de Jong, Bernardus; McConkey, Brian G.; Birdsey, Richard A.; Kurz, Werner A.; Jacobson, Andrew R.; Huntzinger, Deborah N.; Pan, Yude; Post, W. Mac; Cook, Robert B.

2012-01-01

We develop an approach for estimating net ecosystem exchange (NEE) using inventory-based information over North America (NA) for a recent 7-year period (ca. 2000–2006). The approach notably retains information on the spatial distribution of NEE, or the vertical exchange between land and atmosphere of all non-fossil fuel sources and sinks of CO2, while accounting for lateral transfers of forest and crop products as well as their eventual emissions. The total NEE estimate of a -327 ± 252 TgC yr-1 sink for NA was driven primarily by CO2 uptake in the Forest Lands sector (-248 TgC yr-1), largely in the Northwest and Southeast regions of the US, and in the Crop Lands sector (-297 TgC yr-1), predominantly in the Midwest US states. These sinks are counteracted by the carbon source estimated for the Other Lands sector (+218 TgC yr-1), where much of the forest and crop products are assumed to be returned to the atmosphere (through livestock and human consumption). The ecosystems of Mexico are estimated to be a small net source (+18 TgC yr-1) due to land use change between 1993 and 2002. We compare these inventory-based estimates with results from a suite of terrestrial biosphere and atmospheric inversion models, where the mean continental-scale NEE estimate for each ensemble is -511 TgC yr-1 and -931 TgC yr-1, respectively. In the modeling approaches, all sectors, including Other Lands, were generally estimated to be a carbon sink, driven in part by assumed CO2 fertilization and/or lack of consideration of carbon sources from disturbances and product emissions. Additional fluxes not measured by the inventories, although highly uncertain, could add an additional -239 TgC yr-1 to the inventory-based NA sink estimate, thus suggesting some convergence with the modeling approaches.

Seasonal Precipitation Variability Effects on Carbon Exchange in a Tropical Dry Forest of Northwest Mexico

NASA Astrophysics Data System (ADS)

Verduzco, V.; Garatuza-Payan, J.; Yépez, E. A.; Watts, C. J.; Rodriguez, J. C.; Robles-Morua, A.; Vivoni, E. R.

2015-12-01

The Tropical Dry Forest (TDF) cover a large area in tropical and subtropical regions in the Americas and its productivity is thought to have an important contribution to the atmospheric carbon fluxes. However, due to this ecosystem complex dynamics, our understanding about the mechanisms controlling net ecosystem exchange is limited. In this study, five years of continue water and carbon fluxes measurements from eddy covariance complemented with remotely sensed vegetation greenness were used to investigate the ecosystem carbon balance of a TDF in the North American Monsoon region under different hydro climatic conditions. We identified a large CO2 efflux at the start of the summer season that is strongly related to the preceding winter precipitation and greenness. Since this CO2 efflux occurs prior to vegetation green-up, we infer a predominant heterotrophic control owed to high decomposition of accumulated labile soil organic matter from prior growing season. Overall, ecosystem respiration has an important effect on the net ecosystem production over the year, but can be overwhelmed by the strength of the primary productivity during the monsoon season. Precipitation characteristics during the monsoon have significant controls on sustaining carbon fixation in the TDF ecosystem into the fall season. A threshold of ~350 to 400 mm of summer precipitation was identify to switch the annual carbon balance in the TDF ecosystem from a net source (+102 g C/m2/yr) to a net sink (-249 g C/m2/yr). This research points at the needs for understanding the potential effects of changing seasonal precipitation patterns on ecosystem dynamics and carbon sequestration in subtropical regions.

Evaluation of the influence of electric nets on the behaviour of oviposition site seeking Anopheles gambiae s.s

PubMed Central

2014-01-01

Background Electric nets (e-nets) are used to analyse the flight behaviour of insects and have been used extensively to study the host-oriented flight of tsetse flies. Recently we adapted this tool to analyse the oviposition behaviour of gravid malaria vectors, Anopheles gambiae s.s., orienting towards aquatic habitats and traps by surrounding an artificial pond with e-nets and collecting electrocuted mosquitoes on sticky boards on the ground next to the nets. Here we study whether e-nets themselves affect the responses of gravid An. gambiae s.s.. Methods Dual-choice experiments were carried out in 80 m2 screened semi-field systems where 200 gravid An. gambiae s.s. were released each night for 12 nights per experiment. The numbers of mosquito landing on or approaching an oviposition site were studied by adding detergent to the water in an artificial pond or surrounding the pond with a square of e-nets. We also assessed whether the supporting framework of the nets or the sticky boards used to retain electrocuted mosquitoes influenced the catch. Results Two similar detergent treated ponds presented in choice tests caught an equal proportion of the mosquitoes released, whereas a pond surrounded by e-nets caught a higher proportion than an open pond (odds ratio (OR) 1.7, 95% confidence interval (CI) 1.1 - 2.7; p < 0.017). The separate evaluation of the impact of the square of electric nets and the yellow boards on the approach of gravid females towards a pond suggests that the tower-like construction of the square of electric nets did not restrict the approach of females but the yellow sticky boards on the ground attract gravid females to a source of water (OR 2.7 95% CI 1.7 – 4.3; p < 0.001). Conclusion The trapping efficiency of the electric nets is increased when large yellow sticky boards are placed on the ground next to the e-nets to collect electrocuted mosquitoes, possibly because of increased visual contrast to the aquatic habitat. It is therefore important when comparing two treatments that the same trapping device is used in both. The importance of contrast around artificial habitats might be exploited to improve collections of An. gambiae s.s. in gravid traps. PMID:24948354

NetMOD Version 2.0 Parameters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Merchant, Bion J.

2015-08-01

NetMOD ( Net work M onitoring for O ptimal D etection) is a Java-based software package for conducting simulation of seismic, hydroacoustic and infrasonic networks. Network simulations have long been used to study network resilience to station outages and to determine where additional stations are needed to reduce monitoring thresholds. NetMOD makes use of geophysical models to determine the source characteristics, signal attenuation along the path between the source and station, and the performance and noise properties of the station. These geophysical models are combined to simulate the relative amplitudes of signal and noise that are observed at each ofmore » the stations. From these signal-to-noise ratios (SNR), the probability of detection can be computed given a detection threshold. This document describes the parameters that are used to configure the NetMOD tool and the input and output parameters that make up the simulation definitions.« less

Greenhouse gas emissions from alternative futures of deforestation and agricultural management in the southern Amazon.

PubMed

Galford, Gillian L; Melillo, Jerry M; Kicklighter, David W; Cronin, Timothy W; Cerri, Carlos E P; Mustard, John F; Cerri, Carlos C

2010-11-16

The Brazilian Amazon is one of the most rapidly developing agricultural areas in the world and represents a potentially large future source of greenhouse gases from land clearing and subsequent agricultural management. In an integrated approach, we estimate the greenhouse gas dynamics of natural ecosystems and agricultural ecosystems after clearing in the context of a future climate. We examine scenarios of deforestation and postclearing land use to estimate the future (2006-2050) impacts on carbon dioxide (CO(2)), methane (CH(4)), and nitrous oxide (N(2)O) emissions from the agricultural frontier state of Mato Grosso, using a process-based biogeochemistry model, the Terrestrial Ecosystems Model (TEM). We estimate a net emission of greenhouse gases from Mato Grosso, ranging from 2.8 to 15.9 Pg CO(2)-equivalents (CO(2)-e) from 2006 to 2050. Deforestation is the largest source of greenhouse gas emissions over this period, but land uses following clearing account for a substantial portion (24-49%) of the net greenhouse gas budget. Due to land-cover and land-use change, there is a small foregone carbon sequestration of 0.2-0.4 Pg CO(2)-e by natural forests and cerrado between 2006 and 2050. Both deforestation and future land-use management play important roles in the net greenhouse gas emissions of this frontier, suggesting that both should be considered in emissions policies. We find that avoided deforestation remains the best strategy for minimizing future greenhouse gas emissions from Mato Grosso.

VOEventNet: An Open Source of Transient Alerts for Astronomers.

NASA Astrophysics Data System (ADS)

Drake, Andrew J.; Williams, R.; Graham, M. J.; Mahabal, A.; Djorgovski, S. G.; White, R. R.; Vestrand, W. T.; Bloom, J.

2007-12-01

Event based astronomy is acquiring an increasingly important role in astronomy as large time-domain surveys such as Palomar Transient Factory (PTF), Pan-STARRs, SkyMapper and Allan Telescope Array (ATA) surveys come online. These surveys are expected to discover thousands of transients each year ranging from near earth asteroids to distant SNe. Although the primary instruments for of these surveys are in place, in order to fully utilize these event discovery streams, automated alerting and follow-up is a necessity. For the past two years the VOEventNet network has been globally distributing information about transient astronomical events using the VOEvent format, a Virtual Observatory standard. Events messages are openly distributed so that follow-up can utilize the most appropriate resources available in order to characterize the nature of the transients. Since its inception VOEventNet has broadcast more than 3500 SDSSSS Supernova candidates, 3300 GRB alert and follow-up notices from GCN, 700 OGLE microlensing event candidates, and 4300 newly discovered asteroid and optical transient candidates from the Palomar Quest survey. Additional transient event streams are expected this season including optical transients from the Catalina Sky Survey. VOEventNet astronomical transient events streams are available to all astronomers via traditional HTML tables, RSS news-feeds, real-time publication (via Jabber and TCP), and Google Sky mashups. VOEventNet currently carries out optical transient event follow-up with the Palomar 60 and 200in (Caltech), Faulkes Telescopes North and South (LCOGTN), RAPTOR (LANL), and PARITEL (UCB; CfA).

Controls of Carbon Exchange in a Boreal Minerogenic Mire

NASA Astrophysics Data System (ADS)

Nilsson, M.; Sagerfors, J.; Buffam, I.; Eriksson, T.; Grelle, A.; Klemedtsson, L.; Weslien, P.; Laudon, H.; Lindroth, A.

2008-12-01

Based on theories on both mire development and their response to environmental change, the current role of mires as a net carbon sink has been questioned. A rigorous evaluation of the contemporary net C-exchange in mires requires direct measurements of all relevant fluxes. We use data on carbon exchange from a boreal minerogenic oligotrophic mire (Degerö Stormyr, 64°11' N, 19°33E) to derive a contemporary carbon budget and to analyze the main controls on the C exchange. Data on the following fluxes were collected: land-atmosphere CO2 (continuous Eddy Covariance measurements, 7 years) and CH4 (static chambers during the snow free period, 4 years) exchange; DOC in precipitation; loss of TOC, CO2 and CH4 through water runoff, 4 years (continuous discharge measurement and regular C-content measurements). The annual land atmosphere exchange of CO2 (NEE) was fairly constant between years and varied between -48 - -61 gCm-2yr-1 during six out of the seven years, despite a large variation in weather combinations, the average being -53 ± 5 gCm-2yr-1. Of the net fixation of atmospheric CO2-C during the net uptake period, i.e. the growing season, approximately a third was lost during the net source period, i.e. the winter period. During the four years with measurements of methane and runoff C-export another third of the growing season uptake was lost from the mire ecosystem as methane and runoff C. While the balance between the length of the NEE uptake and the NEE loss period are most important for the annual net ecosystem carbon balance (NECB) it is central to understand the controls of the spring-summer, and the summer-autumn transitions. The onset of the net C uptake period was controlled by the interaction between the water content and the temperature of the peat moss surface. We interpret this as mainly being a control of the CO2 photosynthesis uptake by the Sphagnum mosses. The transition from being a net C sink to being a net C source is in contrast only controlled by the soil temperature. The higher the soil temperature during the months preceding the transition the earlier the mire will shift from being a C sink to become a C source. Our interpretation is that this transition is mainly controlled by the activity of the heterotrophic microorganisms. During a year with exceptional dry late summer the NEE dropped to -17 gCm-2yr-1, compared to -53±5 gCm- 2yr-1 during "normal" years. During this period the water table level was approximately 15 cm below the long-term lowest level. Data indicate that most of the reduction in NEE comes from decreased GPP while the ecosystem respiration was relatively stable between years. Including all component fluxes the mire still is a sink of atmospheric C during average weather conditions. During the years 2004 and 2005 the Net Ecosystem Balance (NECB) was -20±3.3 gCm-2yr-1. Both emission of methane and runoff export of carbon contributed significantly to the loss of carbon. During the dry year with a NEE of -17 gCm-2yr-1 the methane emission and runoff C export resulted in a NECB not different from 0.

The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases

PubMed Central

Whetzel, Patricia L.; Grethe, Jeffrey S.; Banks, Davis E.; Martone, Maryann E.

2015-01-01

The NIDDK Information Network (dkNET; http://dknet.org) was launched to serve the needs of basic and clinical investigators in metabolic, digestive and kidney disease by facilitating access to research resources that advance the mission of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK). By research resources, we mean the multitude of data, software tools, materials, services, projects and organizations available to researchers in the public domain. Most of these are accessed via web-accessible databases or web portals, each developed, designed and maintained by numerous different projects, organizations and individuals. While many of the large government funded databases, maintained by agencies such as European Bioinformatics Institute and the National Center for Biotechnology Information, are well known to researchers, many more that have been developed by and for the biomedical research community are unknown or underutilized. At least part of the problem is the nature of dynamic databases, which are considered part of the “hidden” web, that is, content that is not easily accessed by search engines. dkNET was created specifically to address the challenge of connecting researchers to research resources via these types of community databases and web portals. dkNET functions as a “search engine for data”, searching across millions of database records contained in hundreds of biomedical databases developed and maintained by independent projects around the world. A primary focus of dkNET are centers and projects specifically created to provide high quality data and resources to NIDDK researchers. Through the novel data ingest process used in dkNET, additional data sources can easily be incorporated, allowing it to scale with the growth of digital data and the needs of the dkNET community. Here, we provide an overview of the dkNET portal and its functions. We show how dkNET can be used to address a variety of use cases that involve searching for research resources. PMID:26393351

MitProNet: A Knowledgebase and Analysis Platform of Proteome, Interactome and Diseases for Mammalian Mitochondria

PubMed Central

Mao, Song; Chai, Xiaoqiang; Hu, Yuling; Hou, Xugang; Tang, Yiheng; Bi, Cheng; Li, Xiao

2014-01-01

Mitochondrion plays a central role in diverse biological processes in most eukaryotes, and its dysfunctions are critically involved in a large number of diseases and the aging process. A systematic identification of mitochondrial proteomes and characterization of functional linkages among mitochondrial proteins are fundamental in understanding the mechanisms underlying biological functions and human diseases associated with mitochondria. Here we present a database MitProNet which provides a comprehensive knowledgebase for mitochondrial proteome, interactome and human diseases. First an inventory of mammalian mitochondrial proteins was compiled by widely collecting proteomic datasets, and the proteins were classified by machine learning to achieve a high-confidence list of mitochondrial proteins. The current version of MitProNet covers 1124 high-confidence proteins, and the remainders were further classified as middle- or low-confidence. An organelle-specific network of functional linkages among mitochondrial proteins was then generated by integrating genomic features encoded by a wide range of datasets including genomic context, gene expression profiles, protein-protein interactions, functional similarity and metabolic pathways. The functional-linkage network should be a valuable resource for the study of biological functions of mitochondrial proteins and human mitochondrial diseases. Furthermore, we utilized the network to predict candidate genes for mitochondrial diseases using prioritization algorithms. All proteins, functional linkages and disease candidate genes in MitProNet were annotated according to the information collected from their original sources including GO, GEO, OMIM, KEGG, MIPS, HPRD and so on. MitProNet features a user-friendly graphic visualization interface to present functional analysis of linkage networks. As an up-to-date database and analysis platform, MitProNet should be particularly helpful in comprehensive studies of complicated biological mechanisms underlying mitochondrial functions and human mitochondrial diseases. MitProNet is freely accessible at http://bio.scu.edu.cn:8085/MitProNet. PMID:25347823

The Scenario Analysis Tool Suite: A User’s Guide

DTIC Science & Technology

2009-01-01

be exported at any stage and continued manually. The free, open-source integrated development environment (IDE) NetBeans [14] was used in the creation...and Technology Organisation, Australia. 14. Sun Microsystems & CollabNet (2008) NetBeans IDE 6.0, http://wwwnetbeans.org. 15. Tri, N., Boswell, S

Small Boat and Swarm Defense: A Gap Study

DTIC Science & Technology

2008-09-01

25 1. Java......................................................................................................25 2. The NetBeans ...Figure 12. Overview of Java program development (Zakhour 2006)...............................26 Figure 13. NetBeans IDE generating new “Hello World...Application (Zakhour 2006) ..27 Figure 14. Example source code generation using NetBeans for the “Hello World” application (Zakhour 2006

What Students Produce from the Net: Assessing Their Work.

ERIC Educational Resources Information Center

1996

Two papers that examine how to assess students' work in this age of electronic information sources include: "Students on the Net: Enhancing Learning through Authentic Assessment" (James Henri); and "Assessing Students' Work from the Net: An Impossible Dream?" (Paul Lupton) The first paper notes the problem of parents doing…

The moisture budget in relation to convection

NASA Technical Reports Server (NTRS)

Scott, R. W.; Scoggins, J. R.

1977-01-01

An evaluation of the moisture budget in the environment of convective storms is presented by using the unique 3- to 6-h rawinsonde data. Net horizontal and vertical boundary fluxes accounted for most of the large amounts of moisture which were concentrated into convective regions associated with two squall lines that moved through the area during the experiment. The largest values of moisture accumulations were located slightly downwind of the most intense convective activity. Relationships between computed moisture quantities of the moisture budget and radar-observed convection improved when lagging the radar data by 3 h. The residual of moisture which represents all sources and sinks of moisture in the budget equation was largely accounted for by measurements of precipitation.

Using OPeNDAP's Data-Services Framework to Lift Mash-Ups above Blind Dates

NASA Astrophysics Data System (ADS)

Gallagher, J. H. R.; Fulker, D. W.

2015-12-01

OPeNDAP's data-as-service framework (Hyrax) matches diverse sources with many end-user tools and contexts. Keys to its flexibility include: A data model embracing tabular data alongside n-dim arrays and other structures useful in geoinformatics. A REST-like protocol that supports—via suffix notation—a growing set of output forms (netCDF, XML, etc.) plus a query syntax for subsetting. Subsetting applies (via constraints on column values) to tabular data or (via constraints on indices or coordinates) to array-style data . A handler-style architecture that admits a growing set of input types. Community members may contribute handlers, making Hyrax effective as middleware, where N sources are mapped to M outputs with order N+M effort (not NxM). Hyrax offers virtual aggregations of source data, enabling granularity aimed at users, not data-collectors. OPeNDAP-access libraries exist in multiple languages, including Python, Java, and C++. Recent enhancements are increasing this framework's interoperability (i.e., its mash-up) potential. Extensions implemented as servlets—running adjacent to Hyrax—are enriching the forms of aggregation and enabling new protocols: User-specified aggregations, namely, applying a query to (huge) lists of source granules, and receiving one (large) table or zipped netCDF file. OGC (Open Geospatial Consortium) protocols, WMS and WCS. A Webification (W10n) protocol that returns JavaScript Object Notation (JSON). Extensions to OPeNDAP's query language are reducing transfer volumes and enabling new forms of inspection. Advances underway include: Functions that, for triangular-mesh sources, return sub-meshes spec'd via geospatial bounding boxes. Functions that, for data from multiple, satellite-borne sensors (with differing orbits), select observations based on coincidence. Calculations of means, histograms, etc. that greatly reduce output volumes.. Paths for communities to contribute new server functions (in Python, e.g.) that data providers may incorporate into Hyrax via installation parameters. One could say Hyrax itself is a mash-up, but we suggest it as an instrument for a mash-up artist's toolbox. This instrument can support mash-ups built on netCDF files, OGC protocols, JavaScript Web pages, and/or programs written in Python, Java, C or C++.

Land Use Effects on Net Greenhouse Gas Fluxes in the US Great Plains: Historical Trends and Model Projections

NASA Astrophysics Data System (ADS)

Del Grosso, S. J.; Parton, W. J.; Ojima, D. S.; Mosier, A. R.; Mosier, A. R.; Paustian, K.; Peterson, G. A.

2001-12-01

We present maps showing regional patterns of land use change and soil C levels in the US Great Plains during the 20th century and time series of net greenhouse gas fluxes associated with different land uses. Net greenhouse gas fluxes were calculated by accounting for soil CO2 fluxes, the CO2 equivalents of N2O emissions and CH4 uptake, and the CO2 costs of N fertilizer production. Both historical and modern agriculture in this region have been net sources of greenhouse gases. The primary reason for this, prior to 1950, is that agriculture mined soil C and resulted in net CO2 emissions. When chemical N fertilizer became widely used in the 1950's agricultural soils began to sequester CO2-C but these soils were still net greenhouse gas sources if the effects of increased N2O emissions and decreased CH4 uptake are included. The sensitivity of net greenhouse gas fluxes to conventional and alternative land uses was explored using the DAYCENT ecosystem model. Model projections suggest that conversion to no-till, reduction of the fallow period, and use of nitrification inhibitors can significantly decrease net greenhouse gas emissions in dryland and irrigated systems, while maintaining or increasing crop yields.

26 CFR 1.904(g)-3 - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2012 CFR

2012-04-01

... of separate limitation losses, overall foreign losses, and overall domestic losses. 1.904(g)-3 Section 1.904(g)-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Income from Sources Without the United States § 1.904(g...

26 CFR 1.904(g)-3 - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2010 CFR

2010-04-01

... of separate limitation losses, overall foreign losses, and overall domestic losses. 1.904(g)-3 Section 1.904(g)-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES Income from Sources Without the United States § 1.904(g)-3 Ordering...

26 CFR 1.904(g)-3 - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2014 CFR

2014-04-01

... recapture of separate limitation losses, overall foreign losses, and overall domestic losses. 1.904(g)-3 Section 1.904(g)-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Income from Sources Without the United States § 1.904(g...

26 CFR 1.904(g)-3 - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2011 CFR

2011-04-01

... of separate limitation losses, overall foreign losses, and overall domestic losses. 1.904(g)-3 Section 1.904(g)-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Income from Sources Without the United States § 1.904(g...

26 CFR 1.904(g)-3 - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2013 CFR

2013-04-01

... recapture of separate limitation losses, overall foreign losses, and overall domestic losses. 1.904(g)-3 Section 1.904(g)-3 Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES (CONTINUED) Income from Sources Without the United States § 1.904(g...

Accounting for intracell flow in models with emphasis on water table recharge and stream-aquifer interaction: 1. Problems and concepts

USGS Publications Warehouse

Jorgensen, Donald G.; Signor, Donald C.; Imes, Jeffrey L.

1989-01-01

Intracell flow is important in modeling cells that contain both sources and sinks. Special attention is needed if recharge through the water table is a source. One method of modeling multiple sources and sinks is to determine the net recharge per cell. For example, for a model cell containing both a sink and recharge through the water table, the amount of recharge should be reduced by the ratio of the area of influence of the sink within the cell to the area of the cell. The reduction is the intercepted portion of the recharge. In a multilayer model this amount is further reduced by a proportion factor, which is a function of the depth of the flow lines from the water table boundary to the internal sink. A gaining section of a stream is a typical sink. The aquifer contribution to a gaining stream can be conceptualized as having two parts; the first part is the intercepted lateral flow from the water table and the second is the flow across the streambed due to differences in head between the water level in the stream and the aquifer below. The amount intercepted is a function of the geometry of the cell, but the amount due to difference in head across the stream bed is largely independent of cell geometry. A discharging well can intercept recharge through the water table within a model cell. The net recharge to the cell would be reduced in proportion to the area of influence of the well within the cell. The area of influence generally changes with time. Thus the amount of intercepted recharge and net recharge may not be constant with time. During periods when the well is not discharging there will be no intercepted recharge even though the area of influence from previous pumping may still exist. The reduction of net recharge per cell due to internal interception of flow will result in a model-calculated mass balance less than the prototype. Additionally the “effective transmissivity” along the intercell flow paths may be altered when flow paths are occupied by intercepted recharge.

Net subterranean estuarine export fluxes of dissolved inorganic C, N, P, Si, and total alkalinity into the Jiulong River estuary, China

NASA Astrophysics Data System (ADS)

Wang, Guizhi; Wang, Zhangyong; Zhai, Weidong; Moore, Willard S.; Li, Qing; Yan, Xiuli; Qi, Di; Jiang, Yuwu

2015-01-01

To evaluate geochemical impacts of the subterranean estuary (STE) on the Jiulong River estuary, China, we estimated seasonal fluxes of subterranean water discharge into the estuary based on the mass balance of radium isotopes and net subterranean export fluxes of dissolved inorganic C (DIC), N (DIN), Si (DSi), soluble reactive phosphorus (SRP), and total alkalinity (TA). Based on 226Ra data, the subterranean discharge (in 107 m3 d-1) was estimated to be 0.29-0.60 in the spring, 0.69-1.44 in the summer, 0.45-0.93 in the fall, and 0.26-0.54 in the winter. This was equivalent to 8-19% of the concomitant river discharge. The net spatially integrated material fluxes from the STE into the estuary were equivalent up to 45-110% of the concomitant riverine fluxes for DIC and TA, around 14-32% for DSi and 7-19% for DIN, and negligible for SRP. Paradoxically, the mixing lines along the salinity gradient revealed no apparent additions of these species. These additions are not revealed because the STE is a relatively small spatially-averaged source (at most 11% of the total input at steady state) that spreads throughout the estuary as a non-point source in contrast to the major point sources of the river and the ocean for the estuary and a true open ocean endmember is likely lacking. Greater water flushing in the summer might dilute the STE effect on the mixing lines even more. The great spatial variation in salinity in the estuary introduced the major uncertainty in our estimates of the flushing time, which further affected the estimate of the subterranean discharge and associated material fluxes. Additionally, the great spatial variation in the STE endmember caused the relatively large ranges in these flux estimates. Despite apparent conservative mixing of DIC, DIN, and DSi in estuaries, net subterranean exports must be taken into account in evaluating geochemical impacts of estuarine exports on shelf waters.

Source sparsity control of sound field reproduction using the elastic-net and the lasso minimizers.

PubMed

Gauthier, P-A; Lecomte, P; Berry, A

2017-04-01

Sound field reproduction is aimed at the reconstruction of a sound pressure field in an extended area using dense loudspeaker arrays. In some circumstances, sound field reproduction is targeted at the reproduction of a sound field captured using microphone arrays. Although methods and algorithms already exist to convert microphone array recordings to loudspeaker array signals, one remaining research question is how to control the spatial sparsity in the resulting loudspeaker array signals and what would be the resulting practical advantages. Sparsity is an interesting feature for spatial audio since it can drastically reduce the number of concurrently active reproduction sources and, therefore, increase the spatial contrast of the solution at the expense of a difference between the target and reproduced sound fields. In this paper, the application of the elastic-net cost function to sound field reproduction is compared to the lasso cost function. It is shown that the elastic-net can induce solution sparsity and overcomes limitations of the lasso: The elastic-net solves the non-uniqueness of the lasso solution, induces source clustering in the sparse solution, and provides a smoother solution within the activated source clusters.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kung, Feitau; Frank, Stephen; Scheib, Jennifer

A zero energy building (ZEB)—also known as a net zero energy or zero net energy building—is a building that exports as much renewable energy as the total energy it imports from other sources on an annual basis (DOE 2015). Large-scale and commercially viable ZEBs are now in the marketplace, and they are expected to become a larger share of the commercial building footprint as government and private sector policies continue to promote the development of buildings that produce more on-site energy than they use. However, the load profiles of ZEBs are currently perceived by electric utilities to be unfavorable andmore » unpredictable. As shown in Figure ES-1, ZEB load profiles can have abrupt changes in magnitude, at times switching rapidly between exporting and importing electricity. This is a challenge for utilities, which are responsible for constantly balancing electricity supply and demand across the grid. Addressing these concerns will require new strategies and tools.« less

Klusters, NeuroScope, NDManager: a free software suite for neurophysiological data processing and visualization.

PubMed

Hazan, Lynn; Zugaro, Michaël; Buzsáki, György

2006-09-15

Recent technological advances now allow for simultaneous recording of large populations of anatomically distributed neurons in behaving animals. The free software package described here was designed to help neurophysiologists process and view recorded data in an efficient and user-friendly manner. This package consists of several well-integrated applications, including NeuroScope (http://neuroscope.sourceforce.net), an advanced viewer for electrophysiological and behavioral data with limited editing capabilities, Klusters (http://klusters.sourceforge.net), a graphical cluster cutting application for manual and semi-automatic spike sorting, NDManager (GPL,see http://www.gnu.org/licenses/gpl.html), an experimental parameter and data processing manager. All of these programs are distributed under the GNU General Public License (GPL, see ), which gives its users legal permission to copy, distribute and/or modify the software. Also included are extensive user manuals and sample data, as well as source code and documentation.

Impacts of second-generation biofuel feedstock production in the central U.S. on the hydrologic cycle and global warming mitigation potential

NASA Astrophysics Data System (ADS)

Harding, K. J.; Twine, T. E.; VanLoocke, A.; Bagley, J. E.; Hill, J.

2016-10-01

Biofuel feedstocks provide a renewable energy source that can reduce fossil fuel emissions; however, if produced on a large scale they can also impact local to regional water and carbon budgets. Simulation results for 2005-2014 from a regional weather model adapted to simulate the growth of two perennial grass biofuel feedstocks suggest that replacing at least half the current annual cropland with these grasses would increase water use efficiency and drive greater rainfall downwind of perturbed grid cells, but increased evapotranspiration (ET) might switch the Mississippi River basin from having a net warm-season surplus of water (precipitation minus ET) to a net deficit. While this scenario reduces land required for biofuel feedstock production relative to current use for maize grain ethanol production, it only offsets approximately one decade of projected anthropogenic warming and increased water vapor results in greater atmospheric heat content.

NetMOD Version 2.0 Mathematical Framework

DOE Office of Scientific and Technical Information (OSTI.GOV)

Merchant, Bion J.; Young, Christopher J.; Chael, Eric P.

2015-08-01

NetMOD ( Net work M onitoring for O ptimal D etection) is a Java-based software package for conducting simulation of seismic, hydroacoustic and infrasonic networks. Network simulations have long been used to study network resilience to station outages and to determine where additional stations are needed to reduce monitoring thresholds. NetMOD makes use of geophysical models to determine the source characteristics, signal attenuation along the path between the source and station, and the performance and noise properties of the station. These geophysical models are combined to simulate the relative amplitudes of signal and noise that are observed at each ofmore » the stations. From these signal-to-noise ratios (SNR), the probabilities of signal detection at each station and event detection across the network of stations can be computed given a detection threshold. The purpose of this document is to clearly and comprehensively present the mathematical framework used by NetMOD, the software package developed by Sandia National Laboratories to assess the monitoring capability of ground-based sensor networks. Many of the NetMOD equations used for simulations are inherited from the NetSim network capability assessment package developed in the late 1980s by SAIC (Sereno et al., 1990).« less

NetMOD version 1.0 user's manual

DOE Office of Scientific and Technical Information (OSTI.GOV)

Merchant, Bion John

2014-01-01

NetMOD (Network Monitoring for Optimal Detection) is a Java-based software package for conducting simulation of seismic networks. Specifically, NetMOD simulates the detection capabilities of seismic monitoring networks. Network simulations have long been used to study network resilience to station outages and to determine where additional stations are needed to reduce monitoring thresholds. NetMOD makes use of geophysical models to determine the source characteristics, signal attenuation along the path between the source and station, and the performance and noise properties of the station. These geophysical models are combined to simulate the relative amplitudes of signal and noise that are observed atmore » each of the stations. From these signal-to-noise ratios (SNR), the probability of detection can be computed given a detection threshold. This manual describes how to configure and operate NetMOD to perform seismic detection simulations. In addition, NetMOD is distributed with a simulation dataset for the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) International Monitoring System (IMS) seismic network for the purpose of demonstrating NetMOD's capabilities and providing user training. The tutorial sections of this manual use this dataset when describing how to perform the steps involved when running a simulation.« less

SeaDataNet II - EMODNet - building a pan-European infrastructure for marine and ocean data management

NASA Astrophysics Data System (ADS)

Schaap, Dick M. A.; Fichaut, Michele

2014-05-01

The second phase of the project SeaDataNet is well underway since October 2011 and is making good progress. The main objective is to improve operations and to progress towards an efficient data management infrastructure able to handle the diversity and large volume of data collected via research cruises and monitoring activities in European marine waters and global oceans. The SeaDataNet infrastructure comprises a network of interconnected data centres and a central SeaDataNet portal. The portal provides users a unified and transparent overview of the metadata and controlled access to the large collections of data sets, managed by the interconnected data centres, and the various SeaDataNet standards and tools,. Recently the 1st Innovation Cycle has been completed, including upgrading of the CDI Data Discovery and Access service to ISO 19139 and making it fully INSPIRE compliant. The extensive SeaDataNet Vocabularies have been upgraded too and implemented for all SeaDataNet European metadata directories. SeaDataNet is setting and governing marine data standards, and exploring and establishing interoperability solutions to connect to other e-infrastructures on the basis of standards of ISO (19115, 19139), OGC (WMS, WFS, CS-W and SWE), and OpenSearch. The population of directories has also increased considerably in cooperation and involvement in associated EU projects and initiatives. SeaDataNet now gives overview and access to more than 1.4 million data sets for physical oceanography, chemistry, geology, geophysics, bathymetry and biology from more than 90 connected data centres from 30 countries riparian to European seas. Access to marine data is also a key issue for the implementation of the EU Marine Strategy Framework Directive (MSFD). The EU communication 'Marine Knowledge 2020' underpins the importance of data availability and harmonising access to marine data from different sources. SeaDataNet qualified itself for leading the data management component of the EMODNet (European Marine Observation and Data Network) that is promoted in the EU Communication. In the past 4 years EMODNet portals have been initiated for marine data themes: digital bathymetry, chemistry, physical oceanography, geology, biology, and seabed habitat mapping. These portals are now being expanded to all European seas in successor projects, which started mid 2013 from EU DG MARE. EMODNet encourages more data providers to come forward for data sharing and participating in the process of making complete overviews and homogeneous data products. The EMODNet Bathymetry project is very illustrative for the synergy with SeaDataNet and added value of generating public data products. The project develops and publishes Digital Terrain Models (DTM) for the European seas. These are produced from survey and aggregated data sets. The portal provides a versatile DTM viewing service with many relevant map layers and functions for retrieving. A further refinement is taking place in the new phase. The presentation will give information on present services of the SeaDataNet infrastructure and services, highlight key achievements in SeaDataNet II so far, and give further insights in the EMODNet Bathymetry progress.

Catch of channel catfish with tandem-set hoop nets and gill nets in lentic systems of Nebraska

USGS Publications Warehouse

Richters, Lindsey K.; Pope, Kevin L.

2011-01-01

Twenty-six Nebraska water bodies representing two ecosystem types (small standing waters and large standing waters) were surveyed during 2008 and 2009 with tandem-set hoop nets and experimental gill nets to determine if similar trends existed in catch rates and size structures of channel catfish Ictalurus punctatus captured with these gears. Gear efficiency was assessed as the number of sets (nets) that would be required to capture 100 channel catfish given observed catch per unit effort (CPUE). Efficiency of gill nets was not correlated with efficiency of hoop nets for capturing channel catfish. Small sample sizes prohibited estimation of proportional size distributions in most surveys; in the four surveys for which sample size was sufficient to quantify length-frequency distributions of captured channel catfish, distributions differed between gears. The CPUE of channel catfish did not differ between small and large water bodies for either gear. While catch rates of hoop nets were lower than rates recorded in previous studies, this gear was more efficient than gill nets at capturing channel catfish. However, comparisons of size structure between gears may be problematic.

Seasonal variations in methane fluxes in response to summer warming and leaf litter addition in a subarctic heath ecosystem

NASA Astrophysics Data System (ADS)

Pedersen, Emily Pickering; Elberling, Bo; Michelsen, Anders

2017-08-01

Methane (CH4) is a powerful greenhouse gas controlled by both biotic and abiotic processes. Few studies have investigated CH4 fluxes in subarctic heath ecosystems, and climate change-induced shifts in CH4 flux and the overall carbon budget are therefore largely unknown. Hence, there is an urgent need for long-term in situ experiments allowing for the study of ecosystem processes over time scales relevant to environmental change. Here we present in situ CH4 and CO2 flux measurements from a wet heath ecosystem in northern Sweden subjected to 16 years of manipulations, including summer warming with open-top chambers, birch leaf litter addition, and the combination thereof. Throughout the snow-free season, the ecosystem was a net sink of CH4 and CO2 (CH4 -0.27 mg C m-2 d-1; net ecosystem exchange -1827 mg C m-2 d-1), with highest CH4 uptake rates (-0.70 mg C m-2 d-1) during fall. Warming enhanced net CO2 flux, while net CH4 flux was governed by soil moisture. Litter addition and the combination with warming significantly increased CH4 uptake rates, explained by a pronounced soil drying effect of up to 32% relative to ambient conditions. Both warming and litter addition also increased the seasonal average concentration of dissolved organic carbon in the soil. The site was a carbon sink with a net uptake of 60 g C m-2 over the snow-free season. However, warming reduced net carbon uptake by 77%, suggesting that this ecosystem type might shift from snow-free season sink to source with increasing summer temperatures.

Net global warming potential and greenhouse gas intensity influenced by irrigation, tillage, crop rotation, and nitrogen fertilization

USDA-ARS?s Scientific Manuscript database

Little information exists about sources and sinks of greenhouse gases (GHGs) affected by management practices to account for net emissions from agroecosystems. We evaluated the effects of irrigation, tillage, crop rotation, and N fertilization on net global warming potential (GWP) and greenhouse gas...

Classification of foods by transferring knowledge from ImageNet dataset

NASA Astrophysics Data System (ADS)

Heravi, Elnaz J.; Aghdam, Hamed H.; Puig, Domenec

2017-03-01

Automatic classification of foods is a way to control food intake and tackle with obesity. However, it is a challenging problem since foods are highly deformable and complex objects. Results on ImageNet dataset have revealed that Convolutional Neural Network has a great expressive power to model natural objects. Nonetheless, it is not trivial to train a ConvNet from scratch for classification of foods. This is due to the fact that ConvNets require large datasets and to our knowledge there is not a large public dataset of food for this purpose. Alternative solution is to transfer knowledge from trained ConvNets to the domain of foods. In this work, we study how transferable are state-of-art ConvNets to the task of food classification. We also propose a method for transferring knowledge from a bigger ConvNet to a smaller ConvNet by keeping its accuracy similar to the bigger ConvNet. Our experiments on UECFood256 datasets show that Googlenet, VGG and residual networks produce comparable results if we start transferring knowledge from appropriate layer. In addition, we show that our method is able to effectively transfer knowledge to the smaller ConvNet using unlabeled samples.

EPICS SCA CLIENTS ON THE .NET X64 PLATFORM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Timossi, Chris; Nishimura, Hiroshi

2006-10-19

We have developed a .NET assembly, which we call SCA.NET,which we have been using for building EPICS based control roomapplications at the Advanced Light Source (ALS). In this paper we reporton our experiences building a 64-bit version of SCA.NET and theunderlying channel access libraries for Windows XP x64 (using a dual coreAMD Athlon CPU). We also report on our progress in building newaccelerator control applications for this environment.

The Importance of Artificial Intelligence for Naval Intelligence Training Simulations

DTIC Science & Technology

2006-09-01

experimental investigation described later. B. SYSTEM ARCHITECTURE The game-based simulator was created using NetBeans , which is an open source integrated...development environment (IDE) written entirely in Java using the NetBeans Platform. NetBeans is based upon the Java language which contains the...involved within the simulation are conducted in a GUI built within the NetBeans IDE. The opening display allows the user to setup the simulation

Ontological function annotation of long non-coding RNAs through hierarchical multi-label classification.

PubMed

Zhang, Jingpu; Zhang, Zuping; Wang, Zixiang; Liu, Yuting; Deng, Lei

2018-05-15

Long non-coding RNAs (lncRNAs) are an enormous collection of functional non-coding RNAs. Over the past decades, a large number of novel lncRNA genes have been identified. However, most of the lncRNAs remain function uncharacterized at present. Computational approaches provide a new insight to understand the potential functional implications of lncRNAs. Considering that each lncRNA may have multiple functions and a function may be further specialized into sub-functions, here we describe NeuraNetL2GO, a computational ontological function prediction approach for lncRNAs using hierarchical multi-label classification strategy based on multiple neural networks. The neural networks are incrementally trained level by level, each performing the prediction of gene ontology (GO) terms belonging to a given level. In NeuraNetL2GO, we use topological features of the lncRNA similarity network as the input of the neural networks and employ the output results to annotate the lncRNAs. We show that NeuraNetL2GO achieves the best performance and the overall advantage in maximum F-measure and coverage on the manually annotated lncRNA2GO-55 dataset compared to other state-of-the-art methods. The source code and data are available at http://denglab.org/NeuraNetL2GO/. leideng@csu.edu.cn. Supplementary data are available at Bioinformatics online.

On the energy balance closure and net radiation in complex terrain

PubMed Central

Wohlfahrt, Georg; Hammerle, Albin; Niedrist, Georg; Scholz, Katharina; Tomelleri, Enrico; Zhao, Peng

2017-01-01

In complex, sloping terrain, horizontal measurements of net radiation are not reflective of the radiative energy available for the conductive and convective heat exchange of the underlying surface. Using data from a grassland site on a mountain slope characterised by spatial heterogeneity in inclination and aspect, we tested the hypothesis that a correction of the horizontal net radiation measurements which accounts for the individual footprint contributions of the various surfaces to the measured sensible and latent heat eddy covariance fluxes will yield more realistic slope-parallel net radiation estimates compared to a correction based on the average inclination and aspect of the footprint. Our main result is that both approaches led to clear, but very similar improvements in the phase between available energy and the sum of the latent and sensible heat fluxes. As a consequence the variance in the sum of latent and sensible heat flux explained by available radiation improved by >10 %, while energy balance closure improved only slightly. This is shown to be mainly due to the average inclination and aspect corresponding largely with the inclination and aspect of the main flux source area in combination with a limited sensitivity of the slope correction to small angular differences in, particularly, inclination and aspect. We conclude with a discussion of limitations of the present approach and future research directions. PMID:28066093

A comparison of shoreline seines with fyke nets for sampling littoral fish communities in floodplain lakes

USGS Publications Warehouse

Clark, S.J.; Jackson, J.R.; Lochmann, S.E.

2007-01-01

We compared shoreline seines with fyke nets in terms of their ability to sample fish species in the littoral zone of 22 floodplain lakes of the White River, Arkansas. Lakes ranged in size from less than 0.5 to 51.0 ha. Most contained large amounts of coarse woody debris within the littoral zone, thus making seining in shallow areas difficult. We sampled large lakes (>2 ha) using three fyke nets; small lakes (<2 ha) were sampled using two fyke nets. Fyke nets were set for 24 h. Large lakes were sampled with an average of 11 seine hauls/ lake and small lakes were sampled with an average of 3 seine hauls/lake, but exact shoreline seining effort varied among lakes depending on the amount of open shoreline. Fyke nets collected more fish and produced greater species richness and diversity measures than did seining. Species evenness was similar for the two gear types. Two species were unique to seine samples, whereas 13 species and 3 families were unique to fyke-net samples. Although fyke nets collected more fish and more species than did shoreline seines, neither gear collected all the species present in the littoral zone of floodplain lakes. These results confirm the need for a multiple-gear approach to fully characterize the littoral fish assemblages in floodplain lakes. ?? Copyright by the American Fisheries Society 2007.

Popularity of Russian information sources of medical education.

PubMed

Vasilyeva, Irina V; Arseniev, Sergey B

2014-01-01

The aim of the present study is to analyze the popularity of information sources of medical educational sites <webmedinfo.ru>, medical information portal <meduniver.com>, medical portal for students <6years.net>, electronic library of medical literature <booksmed.com>, <medliter.ru> and <medbook.net.ru>. Three sites (<www.webmedinfo.ru>, <meduniver.com> and <6years.net>) provide sources of medical literature, educational videos, medical histories, medical papers and medical popular literature. And three other sites (<www.booksmed.com>, <www.medliter.ru> and <www.medbook.net.ru>) provide sources for electronic medical books on various subjects. Using on-line programs Alexa and Cy-pr we have analyzed the website's rating and identified the main data and time-varying data of the sites. Calculated Alexa Rank rating was determined for each site. Our study has shown that the most popular information sources of medical education among the six studied sites for Russian users is <meduniver.com>; the site <booksmed.com> is at the second place referring to the Alexa Rank rating and the site <webmedinfo.ru> is at the second place referring to the citation index in Yandex. The most popular medical site of electronic medical books is <booksmed.com>.

The Surface Energy Budget and Precipitation Efficiency for Convective Systems During TOGA, COARE, GATE, SCSMEX and ARM: Cloud-Resolving Model Simulations

NASA Technical Reports Server (NTRS)

Tao, W.-K.; Shie, C.-L.; Johnson, D; Simpson, J.; Starr, David OC. (Technical Monitor)

2002-01-01

A two-dimensional version of the Goddard Cumulus Ensemble (GCE) Model is used to simulate convective systems that developed in various geographic locations. Observed large-scale advective tendencies for potential temperature, water vapor mixing ratio, and horizontal momentum derived from field campaigns are used as the main forcing. By examining the surface energy budgets, the model results show that the two largest terms are net condensation (heating/drying) and imposed large-scale forcing (cooling/moistening) for tropical oceanic cases. These two terms arc opposite in sign, however. The contributions by net radiation and latent heat flux to the net condensation vary in these tropical cases, however. For cloud systems that developed over the South China Sea and eastern Atlantic, net radiation (cooling) accounts for about 20% or more of the net condensation. However, short-wave heating and long-wave cooling are in balance with each other for cloud systems over the West Pacific region such that the net radiation is very small. This is due to the thick anvil clouds simulated in the cloud systems over the Pacific region. Large-scale cooling exceeds large-scale moistening in the Pacific and Atlantic cases. For cloud systems over the South China Sea, however, there is more large-scale moistening than cooling even though the cloud systems developed in a very moist environment. though For three cloud systems that developed over a mid-latitude continent, the net radiation and sensible and latent heat fluxes play a much more important role. This means the accurate measurement of surface fluxes and radiation is crucial for simulating these mid-latitude cases.

Perspectives of the KM3NeT project

NASA Astrophysics Data System (ADS)

Margiotta, A.; KM3NeT Collaboration

2016-10-01

KM3NeT is a large distributed research infrastructure that comprises a network of deep-sea neutrino telescopes in the Mediterranean Sea with user ports for Earth and Sea sciences. The main objectives of KM3NeT are the discovery and subsequent observation of high-energy neutrino sources in the Universe (ARCA) and the determination of the mass hierarchy of neutrinos (ORCA). Technically, the network of telescopes will consist of building blocks of 115 vertical detection units anchored at the seabed and connected to shore via a deep sea electro-optical cable. Each detection unit carries 18 optical modules equipped with 31 3; photomultipliers. Two configurations for the building blocks are defined to optimally detect neutrinos in different ranges of energy. The modular technical design of the KM3NeT telescope allows for a progressive implementation and for data taking even with an incomplete detector. The first phase of implementation has started. The next phase foresees the installation of three building blocks: two building blocks, for a total instrumented volume of 1 km3 (ARCA), at the KM3NeT-It site, at a depth of 3500 m, about 100 km offshore Capo Passero, Sicily. The main scientific goals of the ARCA detector is the exploration of the neutrino sky with unprecedented resolution, searching for neutrinos coming from defined sources or sky regions, like the Galactic Plane. It will also look for diffuse high energy neutrino fluxes following the indication provided by the IceCube signal. The third building block, with a more compact distribution of the optical modules, will be deployed at the KM3NeT-Fr site, 40 km offshore Toulon at a depth of 2500 m (ORCA). The main objective of ORCA is studying the neutrino mass-hierarchy problem and exploring the low energy region of the spectrum. The status of the first phase of the KM3NeT implementation is described and a survey of the physics potentiality of the telescope is given in this contribution, with particular emphasis on the high energy studies.

Career Guidance in India Based on O*NET and Cultural Variables

ERIC Educational Resources Information Center

Bhatnagar, Mohit

2018-01-01

The Occupational Information Network (O*NET) is the primary source of occupational information in the United States (US). In this study, I review O*NET's usage for career guidance in India and conceive a career intervention based on it. In an empirical evaluation adopting a posttest-only experimental design with post-graduate management students…

Sounding rocket flight experiment for demonstrating “Furoshiki Satellite” for large phased array antenna

NASA Astrophysics Data System (ADS)

Nakasuka, Shinichi; Funane, Tsukasa; Nakamura, Yuya; Nojiri, Yuta; Sahara, Hironori; Sasaki, Fumiki; Kaya, Nobuyuki

2006-07-01

University of Tokyo and Kobe University are planning a sounding rocket experiment of large membrane "Furoshiki Satellite" extension and large phased array RF transmission. The paper will describe the concept of "Furoshiki Satellite," its application to solar power satellite, and the scenario of micro-gravity experiment using a small sounding rocket. University of Tokyo has been proposing the idea of "Furoshiki Satellite," a large membrane or a net structure, say 1km×1km in size, extended by satellites which hold its corners. The attitude and the shape of the membrane or net structure is controlled by these corner satellites. As one application of Furoshiki Satellite, a large solar power satellite can be configured by several solar cells and RF transmitters placed on several parts of the large net structure. It is difficult to control the position and attitude of the RF transmitters precisely, but using the "retro-directive" method, the tolerance of such position and attitude disturbance will be relaxed by large. This is one of promising systems' concept of the future large solar power satellite or large antenna, because quite a large area can be obtained without any hard structure, and the weight will not depend very much on the size. To demonstrate the feasibility of the extension of large net structure and phased array performance, micro-gravity experiment is planned using a sounding rocket of JAXA/ISAS, Japan.

Mist collection on parallel fiber arrays

NASA Astrophysics Data System (ADS)

Labbé, Romain; Duprat, Camille

2016-11-01

Fog is an important source of fresh water in specific arid regions such as the Atacama Desert in Chile. The method used to collect water passively from fog, either for domestic consumption or research purposes, consists in erecting large porous fiber nets on which the mist droplets impact. The two main mechanisms involved with this process are the impact of the drops on the fibers and the drainage of the fluid from the net, while the main limiting factor is the clogging of the mesh by accumulated water. We consider a novel collection system, made of an array of parallel fibers, that we study experimentally with a wind mist tunnel. In addition, we develop theoretical models considering the coupling of wind flow, droplet trajectories and wetting of the fibers. We find that the collection efficiency strongly depends on the size and distribution of the drops formed on the fibers, and thus on the fibers diameter, inclination angle and wetting properties. In particular, we show that the collection efficiency is greater when large drops are formed on the fibers. By adjusting the fibers diameter and the inter-fiber spacing, we look for an optimal structure that maximizes the collection surface and the drainage, while avoiding flow deviations.

Ergatis: a web interface and scalable software system for bioinformatics workflows

PubMed Central

Orvis, Joshua; Crabtree, Jonathan; Galens, Kevin; Gussman, Aaron; Inman, Jason M.; Lee, Eduardo; Nampally, Sreenath; Riley, David; Sundaram, Jaideep P.; Felix, Victor; Whitty, Brett; Mahurkar, Anup; Wortman, Jennifer; White, Owen; Angiuoli, Samuel V.

2010-01-01

Motivation: The growth of sequence data has been accompanied by an increasing need to analyze data on distributed computer clusters. The use of these systems for routine analysis requires scalable and robust software for data management of large datasets. Software is also needed to simplify data management and make large-scale bioinformatics analysis accessible and reproducible to a wide class of target users. Results: We have developed a workflow management system named Ergatis that enables users to build, execute and monitor pipelines for computational analysis of genomics data. Ergatis contains preconfigured components and template pipelines for a number of common bioinformatics tasks such as prokaryotic genome annotation and genome comparisons. Outputs from many of these components can be loaded into a Chado relational database. Ergatis was designed to be accessible to a broad class of users and provides a user friendly, web-based interface. Ergatis supports high-throughput batch processing on distributed compute clusters and has been used for data management in a number of genome annotation and comparative genomics projects. Availability: Ergatis is an open-source project and is freely available at http://ergatis.sourceforge.net Contact: jorvis@users.sourceforge.net PMID:20413634

Biogenic CH4 and N2O emissions overwhelm land CO2 sink in Asia: Toward a full GHG budget

NASA Astrophysics Data System (ADS)

Tian, H.

2017-12-01

The recent global assessment indicates the terrestrial biosphere as a net source of greenhouse gases to the atmosphere (Tian et al Nature 2016). The fluxes of greenhouse gases (GHG) vary by region. Both TD and BU approaches indicate that human-caused biogenic fluxes of CO2, CH4 and N2O in the biosphere of Southern Asia led to a large net climate warming effect, because the 100-year cumulative effects of CH4 and N2O emissions together exceed that of the terrestrial CO2 sink. Southern Asia has about 90% of the global rice fields and represents more than 60% of the world's nitrogen fertilizer consumption, with 64%-81% of CH4 emissions and 36%-52% of N2O emissions derived from the agriculture and waste sectors. Given the large footprint of agriculture in Southern Asia, improved fertilizer use efficiency, rice management and animal diets could substantially reduce global agricultural N2O and CH4 emissions. This study highlights the importance of including all three major GHGs in regional climate impact assessments, mitigation option and climate policy development.

International trade causes large net economic losses in tropical countries via the destruction of ecosystem services.

PubMed

Chang, Junning; Symes, William S; Lim, Felix; Carrasco, L Roman

2016-05-01

Despite the large implications of the use of tropical land for exports ("land absorption") on ecosystem services (ES) and global biodiversity conservation, the magnitude of these externalities is not known. We quantify the net value of ES lost in tropical countries as a result of cropland, forestland and pastureland absorption for exports after deducting ES gains through imports ("land displacement"). We find that net ES gains occur only in 7 out of the 41 countries and regions considered. We estimate global annual net losses of over 1.7 x 10(12) international dollars (I$) (I$1.1 x 10(12) if carbon-related services are not considered). After deducting the benefits from agricultural, forest and livestock rents in land replacing tropical forests, the net annual losses are I$1.3 and I$0.7 x 10(12), respectively. The results highlight the large magnitude of tropical ES losses through international trade that are not compensated by the rents of land uses in absorbed land.

Cyber Defence in the Armed Forces of the Czech Republic

DTIC Science & Technology

2010-11-01

undesirable action backward discovery. This solution is based on special tools using NetFlow protocol. Active network elements or specialized hardware...probes attached to the backbone network using a tap can be the sources of NetFlow data. The principal advantage of NetFlow protocol is the fact that it...provides primary data in the open form, which can be easily utilized in the subsequent operations. The FlowMon Probe 4000 is mostly used NetFlow

NetMOD Version 2.0 User?s Manual.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Merchant, Bion J.

2015-10-01

NetMOD ( Net work M onitoring for O ptimal D etection) is a Java-based software package for conducting simulation of seismic, hydracoustic, and infrasonic networks. Specifically, NetMOD simulates the detection capabilities of monitoring networks. Network simulations have long been used to study network resilience to station outages and to determine where additional stations are needed to reduce monitoring thresholds. NetMOD makes use of geophysical models to determine the source characteristics, signal attenuation along the path between the source and station, and the performance and noise properties of the station. These geophysical models are combined to simulate the relative amplitudes ofmore » signal and noise that are observed at each of the stations. From these signal-to-noise ratios (SNR), the probability of detection can be computed given a detection threshold. This manual describes how to configure and operate NetMOD to perform detection simulations. In addition, NetMOD is distributed with simulation datasets for the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO) International Monitoring System (IMS) seismic, hydroacoustic, and infrasonic networks for the purpose of demonstrating NetMOD's capabilities and providing user training. The tutorial sections of this manual use this dataset when describing how to perform the steps involved when running a simulation. ACKNOWLEDGEMENTS We would like to thank the reviewers of this document for their contributions.« less

In the Right Ballpark? Assessing the Accuracy of Net Price Calculators

ERIC Educational Resources Information Center

Anthony, Aaron M.; Page, Lindsay C.; Seldin, Abigail

2016-01-01

Large differences often exist between a college's sticker price and net price after accounting for financial aid. Net price calculators (NPCs) were designed to help students more accurately estimate their actual costs to attend a given college. This study assesses the accuracy of information provided by net price calculators. Specifically, we…

Linking netCDF Data with the Semantic Web - Enhancing Data Discovery Across Domains

NASA Astrophysics Data System (ADS)

Biard, J. C.; Yu, J.; Hedley, M.; Cox, S. J. D.; Leadbetter, A.; Car, N. J.; Druken, K. A.; Nativi, S.; Davis, E.

2016-12-01

Geophysical data communities are publishing large quantities of data across a wide variety of scientific domains which are overlapping more and more. Whilst netCDF is a common format for many of these communities, it is only one of a large number of data storage and transfer formats. One of the major challenges ahead is finding ways to leverage these diverse data sets to advance our understanding of complex problems. We describe a methodology for incorporating Resource Description Framework (RDF) triples into netCDF files called netCDF-LD (netCDF Linked Data). NetCDF-LD explicitly connects the contents of netCDF files - both data and metadata, with external web-based resources, including vocabularies, standards definitions, and data collections, and through them, a whole host of related information. This approach also preserves and enhances the self describing essence of the netCDF format and its metadata, whilst addressing the challenge of integrating various conventions into files. We present a case study illustrating how reasoning over RDF graphs can empower researchers to discover datasets across domain boundaries.

Soil nitrogen transformation responses to seasonal precipitation changes are regulated by changes in functional microbial abundance in a subtropical forest

NASA Astrophysics Data System (ADS)

Chen, Jie; Xiao, Guoliang; Kuzyakov, Yakov; Jenerette, G. Darrel; Ma, Ying; Liu, Wei; Wang, Zhengfeng; Shen, Weijun

2017-05-01

The frequency of dry-season droughts and wet-season storms has been predicted to increase in subtropical areas in the coming decades. Since subtropical forest soils are significant sources of N2O and NO3-, it is important to understand the features and determinants of N transformation responses to the predicted precipitation changes. A precipitation manipulation field experiment was conducted in a subtropical forest to reduce dry-season precipitation and increase wet-season precipitation, with annual precipitation unchanged. Net N mineralization, net nitrification, N2O emission, nitrifying (bacterial and archaeal amoA) and denitrifying (nirK, nirS and nosZ) gene abundance, microbial biomass carbon (MBC), extractable organic carbon (EOC), NO3-, NH4+ and soil water content (SWC) were monitored to characterize and explain soil N transformation responses. Dry-season precipitation reduction decreased net nitrification and N mineralization rates by 13-20 %, while wet-season precipitation addition increased both rates by 50 %. More than 20 % of the total variation of net nitrification and N mineralization could be explained by microbial abundance and SWC. Notably, archaeal amoA abundance showed the strongest correlation with net N transformation rates (r ≥ 0.35), suggesting the critical role of archaeal amoA abundance in determining N transformations. Increased net nitrification in the wet season, together with large precipitation events, caused substantial NO3- losses via leaching. However, N2O emission decreased moderately in both dry and wet seasons due to changes in nosZ gene abundance, MBC, net nitrification and SWC (decreased by 10-21 %). We conclude that reducing dry-season precipitation and increasing wet-season precipitation affect soil N transformations through altering functional microbial abundance and MBC, which are further affected by changes in EOC and NH4+ availabilities.

A novel pore-forming toxin in type A Clostridium perfringens is associated with both fatal canine hemorrhagic gastroenteritis and fatal foal necrotizing enterocolitis.

PubMed

Mehdizadeh Gohari, Iman; Parreira, Valeria R; Nowell, Victoria J; Nicholson, Vivian M; Oliphant, Kaitlyn; Prescott, John F

2015-01-01

A role for type A Clostridium perfringens in acute hemorrhagic and necrotizing gastroenteritis in dogs and in necrotizing enterocolitis of neonatal foals has long been suspected but incompletely characterized. The supernatants of an isolate made from a dog and from a foal that died from these diseases were both found to be highly cytotoxic for an equine ovarian (EO) cell line. Partial genome sequencing of the canine isolate revealed three novel putative toxin genes encoding proteins related to the pore-forming Leukocidin/Hemolysin Superfamily; these were designated netE, netF, and netG. netE and netF were located on one large conjugative plasmid, and netG was located with a cpe enterotoxin gene on a second large conjugative plasmid. Mutation and complementation showed that only netF was associated with the cytotoxicity. Although netE and netG were not associated with cytotoxicity, immunoblotting with specific antisera showed these proteins to be expressed in vitro. There was a highly significant association between the presence of netF with type A strains isolated from cases of canine acute hemorrhagic gastroenteritis and foal necrotizing enterocolitis. netE and netF were found in all cytotoxic isolates, as was cpe, but netG was less consistently present. Pulsed-field gel electrophoresis showed that netF-positive isolates belonged to a clonal population; some canine and equine netF-positive isolates were genetically indistinguishable. Equine antisera to recombinant Net proteins showed that only antiserum to rNetF had high supernatant cytotoxin neutralizing activity. The identifica-tion of this novel necrotizing toxin is an important advance in understanding the virulence of type A C. perfringens in specific enteric disease of animals.

A Novel Pore-Forming Toxin in Type A Clostridium perfringens Is Associated with Both Fatal Canine Hemorrhagic Gastroenteritis and Fatal Foal Necrotizing Enterocolitis

PubMed Central

Nowell, Victoria J.; Nicholson, Vivian M.; Oliphant, Kaitlyn; Prescott, John F.

2015-01-01

A role for type A Clostridium perfringens in acute hemorrhagic and necrotizing gastroenteritis in dogs and in necrotizing enterocolitis of neonatal foals has long been suspected but incompletely characterized. The supernatants of an isolate made from a dog and from a foal that died from these diseases were both found to be highly cytotoxic for an equine ovarian (EO) cell line. Partial genome sequencing of the canine isolate revealed three novel putative toxin genes encoding proteins related to the pore-forming Leukocidin/Hemolysin Superfamily; these were designated netE, netF, and netG. netE and netF were located on one large conjugative plasmid, and netG was located with a cpe enterotoxin gene on a second large conjugative plasmid. Mutation and complementation showed that only netF was associated with the cytotoxicity. Although netE and netG were not associated with cytotoxicity, immunoblotting with specific antisera showed these proteins to be expressed in vitro. There was a highly significant association between the presence of netF with type A strains isolated from cases of canine acute hemorrhagic gastroenteritis and foal necrotizing enterocolitis. netE and netF were found in all cytotoxic isolates, as was cpe, but netG was less consistently present. Pulsed-field gel electrophoresis showed that netF-positive isolates belonged to a clonal population; some canine and equine netF-positive isolates were genetically indistinguishable. Equine antisera to recombinant Net proteins showed that only antiserum to rNetF had high supernatant cytotoxin neutralizing activity. The identifica-tion of this novel necrotizing toxin is an important advance in understanding the virulence of type A C. perfringens in specific enteric disease of animals. PMID:25853427

Refining surface net radiation estimates in arid and semi-arid climates of Iran

NASA Astrophysics Data System (ADS)

Golkar, Foroogh; Rossow, William B.; Sabziparvar, Ali Akbar

2018-06-01

Although the downwelling fluxes exhibit space-time scales of dependency on characteristic of atmospheric variations, especially clouds, the upward fluxes and, hence the net radiation, depends on the variation of surface properties, particularly surface skin temperature and albedo. Evapotranspiration at the land surface depends on the properties of that surface and is determined primarily by the net surface radiation, mostly absorbed solar radiation. Thus, relatively high spatial resolution net radiation data are needed for evapotranspiration studies. Moreover, in more arid environments, the diurnal variations of surface (air and skin) temperature can be large so relatively high (sub-daily) time resolution net radiation is also needed. There are a variety of radiation and surface property products available but they differ in accuracy, space-time resolution and information content. This situation motivated the current study to evaluate multiple sources of information to obtain the best net radiation estimate with the highest space-time resolution from ISCCP FD dataset. This study investigates the accuracy of the ISCCP FD and AIRS surface air and skin temperatures, as well as the ISCCP FD and MODIS surface albedos and aerosol optical depths as the leading source of uncertainty in ISCCP FD dataset. The surface air temperatures, 10-cm soil temperatures and surface solar insolation from a number of surface sites are used to judge the best combinations of data products, especially on clear days. The corresponding surface skin temperatures in ISCCP FD, although they are known to be biased somewhat high, disagreed more with AIRS measurements because of the mismatch of spatial resolutions. The effect of spatial resolution on the comparisons was confirmed using the even higher resolution MODIS surface skin temperature values. The agreement of ISCCP FD surface solar insolation with surface measurements is good (within 2.4-9.1%), but the use of MODIS aerosol optical depths as an alternative was checked and found to not improve the agreement. The MODIS surface albedos differed from the ISCCP FD values by no more than 0.02-0.07, but because these differences are mostly at longer wavelengths, they did not change the net solar radiation very much. Therefore to obtain the best estimate of surface net radiation with the best combination of spatial and temporal resolution, we developed a method to adjust the ISCCP FD surface longwave fluxes using the AIRS surface air and skin temperatures to obtain the higher spatial resolution of the latter (45 km), while retaining the 3-h time intervals of the former. Overall, the refinements reduced the ISCCP FD longwave flux magnitudes by about 25.5-42.1 W/m2 RMS (maximum difference -27.5 W/m2 for incoming longwave radiation and -59 W/m2 for outgoing longwave radiation) with the largest differences occurring at 9:00 and 12:00 UTC near local noon. Combining the ISCCP FD net shortwave radiation data and the AIRS-modified net longwave radiation data changed the total net radiation for summertime by 4.64 to 61.5 W/m2 and for wintertime by 1.06 to 41.88 W/m2 (about 11.1-39.2% of the daily mean).

Greenhouse gas emissions from alternative futures of deforestation and agricultural management in the southern Amazon

PubMed Central

Galford, Gillian L.; Melillo, Jerry M.; Kicklighter, David W.; Cronin, Timothy W.; Cerri, Carlos E. P.; Mustard, John F.; Cerri, Carlos C.

2010-01-01

The Brazilian Amazon is one of the most rapidly developing agricultural areas in the world and represents a potentially large future source of greenhouse gases from land clearing and subsequent agricultural management. In an integrated approach, we estimate the greenhouse gas dynamics of natural ecosystems and agricultural ecosystems after clearing in the context of a future climate. We examine scenarios of deforestation and postclearing land use to estimate the future (2006–2050) impacts on carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) emissions from the agricultural frontier state of Mato Grosso, using a process-based biogeochemistry model, the Terrestrial Ecosystems Model (TEM). We estimate a net emission of greenhouse gases from Mato Grosso, ranging from 2.8 to 15.9 Pg CO2-equivalents (CO2-e) from 2006 to 2050. Deforestation is the largest source of greenhouse gas emissions over this period, but land uses following clearing account for a substantial portion (24–49%) of the net greenhouse gas budget. Due to land-cover and land-use change, there is a small foregone carbon sequestration of 0.2–0.4 Pg CO2-e by natural forests and cerrado between 2006 and 2050. Both deforestation and future land-use management play important roles in the net greenhouse gas emissions of this frontier, suggesting that both should be considered in emissions policies. We find that avoided deforestation remains the best strategy for minimizing future greenhouse gas emissions from Mato Grosso. PMID:20651250

Strong ground motion simulation of the 2016 Kumamoto earthquake of April 16 using multiple point sources

NASA Astrophysics Data System (ADS)

Nagasaka, Yosuke; Nozu, Atsushi

2017-02-01

The pseudo point-source model approximates the rupture process on faults with multiple point sources for simulating strong ground motions. A simulation with this point-source model is conducted by combining a simple source spectrum following the omega-square model with a path spectrum, an empirical site amplification factor, and phase characteristics. Realistic waveforms can be synthesized using the empirical site amplification factor and phase models even though the source model is simple. The Kumamoto earthquake occurred on April 16, 2016, with M JMA 7.3. Many strong motions were recorded at stations around the source region. Some records were considered to be affected by the rupture directivity effect. This earthquake was suitable for investigating the applicability of the pseudo point-source model, the current version of which does not consider the rupture directivity effect. Three subevents (point sources) were located on the fault plane, and the parameters of the simulation were determined. The simulated results were compared with the observed records at K-NET and KiK-net stations. It was found that the synthetic Fourier spectra and velocity waveforms generally explained the characteristics of the observed records, except for underestimation in the low frequency range. Troughs in the observed Fourier spectra were also well reproduced by placing multiple subevents near the hypocenter. The underestimation is presumably due to the following two reasons. The first is that the pseudo point-source model targets subevents that generate strong ground motions and does not consider the shallow large slip. The second reason is that the current version of the pseudo point-source model does not consider the rupture directivity effect. Consequently, strong pulses were not reproduced enough at stations northeast of Subevent 3 such as KMM004, where the effect of rupture directivity was significant, while the amplitude was well reproduced at most of the other stations. This result indicates the necessity for improving the pseudo point-source model, by introducing azimuth-dependent corner frequency for example, so that it can incorporate the effect of rupture directivity.[Figure not available: see fulltext.

Carbon Dynamics of Bioenergy Cropping Systems Compared to Conventional Cotton Cropping Systems in the Southern Cotton Belt Region of the U.S.

NASA Astrophysics Data System (ADS)

Rajan, N.; Sharma, S.; Casey, K.; Maas, S. J.

2015-12-01

We are facing an unprecedented challenge in securing America's energy future. To address this challenge, increased biofuel crop production is needed. Second-generation biofuels are made from the by-products of intensive agriculture or from less-intensive agriculture on more marginal lands. The Southwestern U.S. Cotton Belt can play a significant role in this effort through a change from more conventional crops (like continuous cotton) to second-generation biofuel feedstocks (biomass sorghum and perennial grasses). We have established eddy covariance flux towers in producer fields in the Southern High Plains region. Among the four land uses compared, the net carbon uptake was the highest for the biomass sorghum field. During the year 2014, the biomass sorghum field gained approximately 672 gC m-2y-1. The next highest carbon uptake was recorded for the Old World Bluestem grass field, which was approximately 301 gC m-2y-1. The dominant land use in the region is cotton. While the forage sorghum and grass fields acted as net carbon sinks, the irrigated cotton field acted as a net carbon source to the atmosphere during the same period. The irrigated cotton field exhibited a net carbon loss of approximately 246 gC m-2y-1. In contrast, the dryland cotton field acted as a net carbon sink, with a total uptake of approximately 58 g C m-2y-1. The net primary production of the irrigated cotton field was higher than that of the dryland cotton field, yet the irrigated field was a significant carbon source to the atmosphere. This was due to conventional tillage practices combined with irrigation which enhanced the ecosystem respiration significantly compared to the dryland field. In 2014, an early spring cold front caused poor germination of seeds in the majority of the cotton fields in the region, including the eddy covariance site. This site was re-planted on 9 June, which shortened the growing season for cotton. This was also a contributing factor to this field being a net carbon source. When only seasonal data were considered (i.e, from planting to harvest), the biomass sorghum field was the largest net C sink (-668 g C m-2y-1) followed by the grassland field (-298 g C m-2y-1). Among the two cotton fields, the irrigated cotton field remained a net carbon source (38 g C m-2y-1), while the dryland field was a net carbon sink (-127 g C m-2y-1).

26 CFR 1.904(g)-3T - Ordering rules for the allocation of net operating losses, net capital losses, U.S. source losses...

Code of Federal Regulations, 2010 CFR

2010-04-01

...(g)-3T Section 1.904(g)-3T Internal Revenue INTERNAL REVENUE SERVICE, DEPARTMENT OF THE TREASURY (CONTINUED) INCOME TAX (CONTINUED) INCOME TAXES Income from Sources Without the United States § 1.904(g)-3T.... The rules must be applied in the order set forth in paragraphs (b) through (g) of this section. (b...

Planning long lasting insecticide treated net campaigns: should households’ existing nets be taken into account?

PubMed Central

2013-01-01

Background Mass distribution of long-lasting insecticide treated bed nets (LLINs) has led to large increases in LLIN coverage in many African countries. As LLIN ownership levels increase, planners of future mass distributions face the challenge of deciding whether to ignore the nets already owned by households or to take these into account and attempt to target individuals or households without nets. Taking existing nets into account would reduce commodity costs but require more sophisticated, and potentially more costly, distribution procedures. The decision may also have implications for the average age of nets in use and therefore on the maintenance of universal LLIN coverage over time. Methods A stochastic simulation model based on the NetCALC algorithm was used to determine the scenarios under which it would be cost saving to take existing nets into account, and the potential effects of doing so on the age profile of LLINs owned. The model accounted for variability in timing of distributions, concomitant use of continuous distribution systems, population growth, sampling error in pre-campaign coverage surveys, variable net ‘decay’ parameters and other factors including the feasibility and accuracy of identifying existing nets in the field. Results Results indicate that (i) where pre-campaign coverage is around 40% (of households owning at least 1 LLIN), accounting for existing nets in the campaign will have little effect on the mean age of the net population and (ii) even at pre-campaign coverage levels above 40%, an approach that reduces LLIN distribution requirements by taking existing nets into account may have only a small chance of being cost-saving overall, depending largely on the feasibility of identifying nets in the field. Based on existing literature the epidemiological implications of such a strategy is likely to vary by transmission setting, and the risks of leaving older nets in the field when accounting for existing nets must be considered. Conclusions Where pre-campaign coverage levels established by a household survey are below 40% we recommend that planners do not take such LLINs into account and instead plan a blanket mass distribution. At pre-campaign coverage levels above 40%, campaign planners should make explicit consideration of the cost and feasibility of accounting for existing LLINs before planning blanket mass distributions. Planners should also consider restricting the coverage estimates used for this decision to only include nets under two years of age in order to ensure that old and damaged nets do not compose too large a fraction of existing net coverage. PMID:23763773

Planning long lasting insecticide treated net campaigns: should households' existing nets be taken into account?

PubMed

Yukich, Joshua; Bennett, Adam; Keating, Joseph; Yukich, Rudy K; Lynch, Matt; Eisele, Thomas P; Kolaczinski, Kate

2013-06-14

Mass distribution of long-lasting insecticide treated bed nets (LLINs) has led to large increases in LLIN coverage in many African countries. As LLIN ownership levels increase, planners of future mass distributions face the challenge of deciding whether to ignore the nets already owned by households or to take these into account and attempt to target individuals or households without nets. Taking existing nets into account would reduce commodity costs but require more sophisticated, and potentially more costly, distribution procedures. The decision may also have implications for the average age of nets in use and therefore on the maintenance of universal LLIN coverage over time. A stochastic simulation model based on the NetCALC algorithm was used to determine the scenarios under which it would be cost saving to take existing nets into account, and the potential effects of doing so on the age profile of LLINs owned. The model accounted for variability in timing of distributions, concomitant use of continuous distribution systems, population growth, sampling error in pre-campaign coverage surveys, variable net 'decay' parameters and other factors including the feasibility and accuracy of identifying existing nets in the field. Results indicate that (i) where pre-campaign coverage is around 40% (of households owning at least 1 LLIN), accounting for existing nets in the campaign will have little effect on the mean age of the net population and (ii) even at pre-campaign coverage levels above 40%, an approach that reduces LLIN distribution requirements by taking existing nets into account may have only a small chance of being cost-saving overall, depending largely on the feasibility of identifying nets in the field. Based on existing literature the epidemiological implications of such a strategy is likely to vary by transmission setting, and the risks of leaving older nets in the field when accounting for existing nets must be considered. Where pre-campaign coverage levels established by a household survey are below 40% we recommend that planners do not take such LLINs into account and instead plan a blanket mass distribution. At pre-campaign coverage levels above 40%, campaign planners should make explicit consideration of the cost and feasibility of accounting for existing LLINs before planning blanket mass distributions. Planners should also consider restricting the coverage estimates used for this decision to only include nets under two years of age in order to ensure that old and damaged nets do not compose too large a fraction of existing net coverage.

A large and persistent carbon sink in the world's forests

USGS Publications Warehouse

Pan, Y.; Birdsey, R.A.; Fang, J.; Houghton, R.; Kauppi, P.E.; Kurz, W.A.; Phillips, O.L.; Shvidenko, A.; Lewis, S.L.; Canadell, J.G.; Ciais, P.; Jackson, R.B.; Pacala, S.W.; McGuire, A.D.; Piao, S.; Rautiainen, A.; Sitch, S.; Hayes, D.

2011-01-01

The terrestrial carbon sink has been large in recent decades, but its size and location remain uncertain. Using forest inventory data and long-term ecosystem carbon studies, we estimate a total forest sink of 2.4 ?? 0.4 petagrams of carbon per year (Pg C year-1) globally for 1990 to 2007. We also estimate a source of 1.3 ?? 0.7 Pg C year-1 from tropical land-use change, consisting of a gross tropical deforestation emission of 2.9 ?? 0.5 Pg C year-1 partially compensated by a carbon sink in tropical forest regrowth of 1.6 ?? 0.5 Pg C year-1. Together, the fluxes comprise a net global forest sink of 1.1 ?? 0.8 Pg C year-1, with tropical estimates having the largest uncertainties. Our total forest sink estimate is equivalent in magnitude to the terrestrial sink deduced from fossil fuel emissions and land-use change sources minus ocean and atmospheric sinks.

Impact of a behaviour change intervention on long-lasting insecticidal net care and repair behaviour and net condition in Nasarawa State, Nigeria.

PubMed

Koenker, Hannah; Kilian, Albert; Hunter, Gabrielle; Acosta, Angela; Scandurra, Leah; Fagbemi, Babafunke; Onyefunafoa, Emmanuel O; Fotheringham, Megan; Lynch, Matthew

2015-01-21

While some data on net durability have been accumulating in recent years, including formative qualitative research on attitudes towards net care and repair, no data are available on how the durability of a net is influenced by behaviour of net maintenance, care and repair, and whether behavioural change interventions (BCC) could substantially impact on the average useful life of the net. The study used an intervention-control design with before-after assessment through repeated cross-sectional household surveys with two-stage cluster sampling following Nasarawa State's December 2010 mass campaign. All campaign nets were 100-denier polyester, long-lasting insecticidal nets (LLIN). Baseline, midline, and endline surveys occurred at one-year intervals, in March 2012, March 2013, and April 2014, respectively. Outcome measures were the proportion of confirmed campaign nets with observed repairs, and the proportion in serviceable condition, measured with proportionate hole index (pHI) and according to WHO guidelines. For all respondents, exposure to BCC messages was strongly correlated with increased positive attitude towards care and repair, and increases in attitude were positively correlated with observed net repairs, and with the proportion of nets in serviceable condition. In a multivariate regression model, positive care and repair attitude (OR 6.17 p = 0.001) and level of exposure (1 source: OR 4.00 p = 0.000; 3 sources: OR 9.34 p = 0.000) remained the most significant predictors of net condition, controlling for background and environmental factors. Nets that were tied up had 2.70 higher odds of being in serviceable condition (p = 0.001), while repairs made to nets were not sufficient to improve their pHI category. Estimated median net lifespan was approximately one full year longer for nets in households with a positive compared to a negative attitude. Exposure to multiple channels of a comprehensive BCC intervention was associated with improved attitude scores, and with improved net condition at endline. It is possible for BCC interventions to change both attitudes and behaviours, and to have an important effect on overall median net lifespan. Care and repair messages are easily incorporated into existing malaria BCC platforms, and will help contribute to improved net condition, providing, in principle, more protection from malaria.

SeaDataNet II - EMODNet Bathymetry - building a pan-European infrastructure for marine and ocean data management and a digital high resolution bathymetry for European seas

NASA Astrophysics Data System (ADS)

Schaap, Dick M. A.; Fichaut, Michele

2015-04-01

The second phase of the project SeaDataNet is well underway since October 2011. The main objective is to improve operations and to progress towards an efficient data management infrastructure able to handle the diversity and large volume of data collected via research cruises and monitoring activities in European marine waters and global oceans. The SeaDataNet infrastructure comprises a network of interconnected data centres and a central SeaDataNet portal. The portal provides users a unified and transparent overview of the metadata and controlled access to the large collections of data sets, managed by the interconnected data centres, and the various SeaDataNet standards and tools,. SeaDataNet is also setting and governing marine data standards, and exploring and establishing interoperability solutions to connect to other e-infrastructures on the basis of standards of ISO (19115, 19139), OGC (WMS, WFS, CS-W and SWE), and OpenSearch. The population of directories has increased considerably in cooperation and involvement in associated EU projects and initiatives. SeaDataNet now gives overview and access to more than 1.6 million data sets for physical oceanography, chemistry, geology, geophysics, bathymetry and biology from more than 100 connected data centres from 34 countries riparian to European seas. Access to marine data is also a key issue for the implementation of the EU Marine Strategy Framework Directive (MSFD). The EU communication 'Marine Knowledge 2020' underpins the importance of data availability and harmonising access to marine data from different sources. SeaDataNet qualified itself for an active role in the data management component of the EMODnet (European Marine Observation and Data network) that is promoted in the EU Communication. Starting 2009 EMODnet pilot portals have been initiated for marine data themes: digital bathymetry, chemistry, physical oceanography, geology, biology, and seabed habitat mapping. These portals are being expanded to all European sea regions as part of EMODnet Phase 2, which started mid 2013. EMODnet encourages more data providers to come forward for data sharing and participating in the process of making complete overviews and homogeneous data products. The EMODnet Bathymetry project is very illustrative for the synergy between SeaDataNet and EMODnet and added value of generating public data products. The project develops and publishes Digital Terrain Models (DTM) for the European seas. These are produced from survey and aggregated data sets. The portal provides a versatile DTM viewing service with many relevant map layers and functions for retrieving. A further refinement is taking place as part of phase 2. The presentation will highlight key achievements in SeaDataNet II and give further details and views on the new EMODNet Digital Bathymetry for European seas as to be released early 2015.

Surveillance for White-Nose Syndrome in the bat community at El Malpais National Monument, New Mexico, 2011

USGS Publications Warehouse

Valdez, Ernest W.

2012-01-01

From late winter to summer 2011, the U.S. Geological Survey Arid Lands Field Station conducted mist-netting efforts at El Malpais National Monument and on adjacent lands belonging to Bureau of Land Management and U.S. Forest Service to detect the occurrence of white-nose syndrome or causal fungal agent (Geomyces destructans). During this assessment, 421 bats belonging to 8 species were documented at El Malpais National Monument and adjacent lands. None of these captures showed evidence for the presence of white-nose syndrome or G. destructans, but it is possible that the subtle signs of some infections may not have been observed. Throughout the field efforts, Laguna de Juan Garcia was the only water source located on El Malpais National Monument and was netted on June 20 and 27, July 25, and August 2, 2011. During these dates, a total of 155 bats were captured, belonging to eight species including: Corynorhinus townsendii (Townsend's Big-Eared Bat), Eptesicus fuscus (Big Brown Bat), Lasionycterics noctivagans (Silver-Haired Bat), Myotis ciliolabrum (Small-Footed Myotis), M. evotis (Long-eared myotis), M. thysanodes (Fringed Myotis), M. volans (Long-Legged Myotis), and Tadarida brasiliensis (Brazilian Free-Tailed Bat). Overall, Laguna de Juan Garcia had the greatest number of captures (79 bats) during one night compared to the other sites netted on adjacent lands and had the greatest species diversity of 8 species netted, not including Euderma maculatum (Spotted Bat) that was detected by its audible calls as it flew overhead. Laguna de Juan Garcia is an important site to bats because of its accessibility by all known occurring species, including the less-maneuverable T. brasiliensis that is known to form large colonies in the park. Laguna de Juan Garcia is also important as a more permanent water source during drought conditions in the earlier part of the spring and summer, as observed in 2011.

Development of Real-time Tsunami Inundation Forecast Using Ocean Bottom Tsunami Networks along the Japan Trench

NASA Astrophysics Data System (ADS)

Aoi, S.; Yamamoto, N.; Suzuki, W.; Hirata, K.; Nakamura, H.; Kunugi, T.; Kubo, T.; Maeda, T.

2015-12-01

In the 2011 Tohoku earthquake, in which huge tsunami claimed a great deal of lives, the initial tsunami forecast based on hypocenter information estimated using seismic data on land were greatly underestimated. From this lesson, NIED is now constructing S-net (Seafloor Observation Network for Earthquakes and Tsunamis along the Japan Trench) which consists of 150 ocean bottom observatories with seismometers and pressure gauges (tsunamimeters) linked by fiber optic cables. To take full advantage of S-net, we develop a new methodology of real-time tsunami inundation forecast using ocean bottom observation data and construct a prototype system that implements the developed forecasting method for the Pacific coast of Chiba prefecture (Sotobo area). We employ a database-based approach because inundation is a strongly non-linear phenomenon and its calculation costs are rather heavy. We prepare tsunami scenario bank in advance, by constructing the possible tsunami sources, and calculating the tsunami waveforms at S-net stations, coastal tsunami heights and tsunami inundation on land. To calculate the inundation for target Sotobo area, we construct the 10-m-mesh precise elevation model with coastal structures. Based on the sensitivities analyses, we construct the tsunami scenario bank that efficiently covers possible tsunami scenarios affecting the Sotobo area. A real-time forecast is carried out by selecting several possible scenarios which can well explain real-time tsunami data observed at S-net from tsunami scenario bank. An advantage of our method is that tsunami inundations are estimated directly from the actual tsunami data without any source information, which may have large estimation errors. In addition to the forecast system, we develop Web services, APIs, and smartphone applications and brush them up through social experiments to provide the real-time tsunami observation and forecast information in easy way to understand toward urging people to evacuate.

Cyclic occurrence of fire and its role in carbon dynamics along an edaphic moisture gradient in longleaf pine ecosystems.

PubMed

Whelan, Andrew; Mitchell, Robert; Staudhammer, Christina; Starr, Gregory

2013-01-01

Fire regulates the structure and function of savanna ecosystems, yet we lack understanding of how cyclic fire affects savanna carbon dynamics. Furthermore, it is largely unknown how predicted changes in climate may impact the interaction between fire and carbon cycling in these ecosystems. This study utilizes a novel combination of prescribed fire, eddy covariance (EC) and statistical techniques to investigate carbon dynamics in frequently burned longleaf pine savannas along a gradient of soil moisture availability (mesic, intermediate and xeric). This research approach allowed us to investigate the complex interactions between carbon exchange and cyclic fire along the ecological amplitude of longleaf pine. Over three years of EC measurement of net ecosystem exchange (NEE) show that the mesic site was a net carbon sink (NEE = -2.48 tonnes C ha(-1)), while intermediate and xeric sites were net carbon sources (NEE = 1.57 and 1.46 tonnes C ha(-1), respectively), but when carbon losses due to fuel consumption were taken into account, all three sites were carbon sources (10.78, 7.95 and 9.69 tonnes C ha(-1) at the mesic, intermediate and xeric sites, respectively). Nonetheless, rates of NEE returned to pre-fire levels 1-2 months following fire. Consumption of leaf area by prescribed fire was associated with reduction in NEE post-fire, and the system quickly recovered its carbon uptake capacity 30-60 days post fire. While losses due to fire affected carbon balances on short time scales (instantaneous to a few months), drought conditions over the final two years of the study were a more important driver of net carbon loss on yearly to multi-year time scales. However, longer-term observations over greater environmental variability and additional fire cycles would help to more precisely examine interactions between fire and climate and make future predictions about carbon dynamics in these systems.

Cyclic Occurrence of Fire and Its Role in Carbon Dynamics along an Edaphic Moisture Gradient in Longleaf Pine Ecosystems

PubMed Central

Whelan, Andrew; Mitchell, Robert; Staudhammer, Christina; Starr, Gregory

2013-01-01

Fire regulates the structure and function of savanna ecosystems, yet we lack understanding of how cyclic fire affects savanna carbon dynamics. Furthermore, it is largely unknown how predicted changes in climate may impact the interaction between fire and carbon cycling in these ecosystems. This study utilizes a novel combination of prescribed fire, eddy covariance (EC) and statistical techniques to investigate carbon dynamics in frequently burned longleaf pine savannas along a gradient of soil moisture availability (mesic, intermediate and xeric). This research approach allowed us to investigate the complex interactions between carbon exchange and cyclic fire along the ecological amplitude of longleaf pine. Over three years of EC measurement of net ecosystem exchange (NEE) show that the mesic site was a net carbon sink (NEE = −2.48 tonnes C ha−1), while intermediate and xeric sites were net carbon sources (NEE = 1.57 and 1.46 tonnes C ha−1, respectively), but when carbon losses due to fuel consumption were taken into account, all three sites were carbon sources (10.78, 7.95 and 9.69 tonnes C ha−1 at the mesic, intermediate and xeric sites, respectively). Nonetheless, rates of NEE returned to pre-fire levels 1–2 months following fire. Consumption of leaf area by prescribed fire was associated with reduction in NEE post-fire, and the system quickly recovered its carbon uptake capacity 30–60 days post fire. While losses due to fire affected carbon balances on short time scales (instantaneous to a few months), drought conditions over the final two years of the study were a more important driver of net carbon loss on yearly to multi-year time scales. However, longer-term observations over greater environmental variability and additional fire cycles would help to more precisely examine interactions between fire and climate and make future predictions about carbon dynamics in these systems. PMID:23335986

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop.

PubMed

Schumacher, André; Pireddu, Luca; Niemenmaa, Matti; Kallio, Aleksi; Korpelainen, Eija; Zanetti, Gianluigi; Heljanko, Keijo

2014-01-01

Hadoop MapReduce-based approaches have become increasingly popular due to their scalability in processing large sequencing datasets. However, as these methods typically require in-depth expertise in Hadoop and Java, they are still out of reach of many bioinformaticians. To solve this problem, we have created SeqPig, a library and a collection of tools to manipulate, analyze and query sequencing datasets in a scalable and simple manner. SeqPigscripts use the Hadoop-based distributed scripting engine Apache Pig, which automatically parallelizes and distributes data processing tasks. We demonstrate SeqPig's scalability over many computing nodes and illustrate its use with example scripts. Available under the open source MIT license at http://sourceforge.net/projects/seqpig/

Modeling of water treatment plant using timed continuous Petri nets

NASA Astrophysics Data System (ADS)

Nurul Fuady Adhalia, H.; Subiono, Adzkiya, Dieky

2017-08-01

Petri nets represent graphically certain conditions and rules. In this paper, we construct a model of the Water Treatment Plant (WTP) using timed continuous Petri nets. Specifically, we consider that (1) the water pump always active and (2) the water source is always available. After obtaining the model, the flow through the transitions and token conservation laws are calculated.

Governance in Open Source Software Development Projects: Towards a Model for Network-Centric Edge Organizations

DTIC Science & Technology

2008-06-01

project is not an isolated OSSD project. Instead, the NetBeans IDE which is the focus of development activities in the NetBeans.org project community...facilitate or constrain the intended usage of the NetBeans IDE. Figure 1 provides a rendering of some of the more visible OSSD projects that...as BioBeans and RefactorIT communities build tools on top of or extending the NetBeans platform or IDE. How do these organizations interact with

Large interannual variability in net ecosystem carbon dioxide exchange of a disturbed temperate peatland.

PubMed

Aslan-Sungur, Guler; Lee, Xuhui; Evrendilek, Fatih; Karakaya, Nusret

2016-06-01

Peatland ecosystems play an important role in the global carbon (C) cycle as significant C sinks. However, human-induced disturbances can turn these sinks into sources of atmospheric CO2. Long-term measurements are needed to understand seasonal and interannual variability of net ecosystem CO2 exchange (NEE) and effects of hydrological conditions and their disturbances on C fluxes. Continuous eddy-covariance measurements of NEE were conducted between August 2010 and April 2014 at Yenicaga temperate peatland (Turkey), which was drained for agricultural usage and for peat mining until 2009. Annual NEE during the three full years of measurement indicated that the peatland acted as a CO2 source with large interannual variability, at rates of 246, 244 and 663 g Cm(-2)yr(-1) for 2011, 2012, and 2013 respectively, except for June 2011, and May to July 2012. The emission strengths were comparable to those found for severely disturbed tropical peatlands. The peak CO2 emissions occurred in the dry summer of 2013 when water table level (WTL) was below a threshold value of -60 cm and soil water content (SCW) below a threshold value of 70% by volume. Water availability index was found to have a stronger explanatory power for variations in monthly ecosystem respiration (ER) than the traditional water status indicators (SCW and WTL). Air temperature, evapotranspiration and vapor pressure deficient were the most significant variables strongly correlated with NEE and its component fluxes of gross primary production and ER. Copyright © 2016 Elsevier B.V. All rights reserved.

Africa's largest long-lasting insecticide-treated net producer: lessons from A to Z Textiles.

PubMed

Masum, Hassan; Shah, Ronak; Schroeder, Karl; Daar, Abdallah S; Singer, Peter A

2010-12-13

Field trials have demonstrated the efficacy of insecticide-treated nets, and the WHO has recently endorsed a shift toward Long-Lasting Insecticide Treated nets (LLINs) due to factors such as reduced distribution costs. However, the need for LLINs poses several challenges. Is it possible to manufacture LLINs in large quantities in the African continent, where malaria is most endemic? When production is located in low-income countries, what role is played by local funding and employment, scaling up manufacturing, and partnerships? What factors influence availability and pricing? A case study of A to Z Textiles was undertaken to answer the question of how large-scale production of LLINs can occur in a low income setting. One of the largest sources of bed nets for Africa, A to Z Textiles is Africa-based, and its Tanzanian operations have a production capacity of 30 million LLINs per year, along with full WHO recommendation for its nets. Our analysis is based on semi-structured interviews with key informants familiar with A to Z, site visits in Tanzania, and literature reviews.This paper discusses the history and current status of A to Z Textiles, identifies the factors that led to its success, and suggests policy considerations that could support similar initiatives in the future. Local funding, scaling up manufacturing, technology transfer, and partnerships all played important roles in A to Z's ascent, as did perceived benefits of local employment and capacity-building. Regulatory issues and procurement rules acted as barriers. A to Z cost-effectively manufactures high-quality LLINs where malaria is most endemic. With a production capacity of 30 million LLINs per year, and full WHOPES (WHO Pesticide Evaluation Scheme) certification, A to Z Textiles demonstrates how key health goods can be successfully produced in the low-income countries that use them. Its example may be instructive and of high interest to readers in the malaria community, especially in developing countries, and to those who wish to support or partner with efforts by developing countries to build their health innovation capacity.

Africa's largest long-lasting insecticide-treated net producer: lessons from A to Z Textiles

PubMed Central

2010-01-01

Background Field trials have demonstrated the efficacy of insecticide-treated nets, and the WHO has recently endorsed a shift toward Long-Lasting Insecticide Treated nets (LLINs) due to factors such as reduced distribution costs. However, the need for LLINs poses several challenges. Is it possible to manufacture LLINs in large quantities in the African continent, where malaria is most endemic? When production is located in low-income countries, what role is played by local funding and employment, scaling up manufacturing, and partnerships? What factors influence availability and pricing? Discussion A case study of A to Z Textiles was undertaken to answer the question of how large-scale production of LLINs can occur in a low income setting. One of the largest sources of bed nets for Africa, A to Z Textiles is Africa-based, and its Tanzanian operations have a production capacity of 30 million LLINs per year, along with full WHO recommendation for its nets. Our analysis is based on semi-structured interviews with key informants familiar with A to Z, site visits in Tanzania, and literature reviews. This paper discusses the history and current status of A to Z Textiles, identifies the factors that led to its success, and suggests policy considerations that could support similar initiatives in the future. Local funding, scaling up manufacturing, technology transfer, and partnerships all played important roles in A to Z’s ascent, as did perceived benefits of local employment and capacity-building. Regulatory issues and procurement rules acted as barriers. A to Z cost-effectively manufactures high-quality LLINs where malaria is most endemic. Summary With a production capacity of 30 million LLINs per year, and full WHOPES (WHO Pesticide Evaluation Scheme) certification, A to Z Textiles demonstrates how key health goods can be successfully produced in the low-income countries that use them. Its example may be instructive and of high interest to readers in the malaria community, especially in developing countries, and to those who wish to support or partner with efforts by developing countries to build their health innovation capacity. PMID:21144077

A 5 Year Study of Carbon Fluxes from a Restored English Blanket Bog

NASA Astrophysics Data System (ADS)

Worrall, F.; Dixon, S.; Evans, M.

2014-12-01

This study aimed to measure the effects of ecological restoration on blanket peat water table depths, DOC concentrations and CO2 fluxes. In April 2003 the Bleaklow Plateau, an extensive area of deep blanket peat in the Peak District National Park, northern England, was devegetated by a wildfire. As a result the area was selected for large scale restoration. In this study we considered a 5-year study of four restored sites in comparison to both an unrestored, bare peat control and to vegetated control that did not require restoration. Results suggested that sites with revegetation alongside slope stabilisation had the highest rates of photosynthesis and were the largest net (daylight hours) sinks of CO2. Bare sites were the largest net sources of CO2 and had the deepest water table depths. Sites with gully wall stabilisation were between 5-8 times more likely to be net CO2 sinks than the bare sites. Revegetation without gully flow blocking using plastic dams did not have a large effect on water table depths in and around the gullies investigated whereas a blocked gully had water table depths comparable to a naturally revegetating gully. A ten centimetre lowering in water table depth decreased the probability of observing a net CO2 sink, on a given site, by up to 30%. With respect to DOC the study showed that the average soil porewater DOC concentration on the restored sites rose significantly over the 5 year study representing a 34% increase relative to the vegetated control and an 11% increase relative to the unrestored, bare control. Soil pore water concentrations were not significantly different from surface runoff DOC concentrations and therefore restoration as conducted by this study would have contributed to water quality deterioration in the catchment. The most important conclusion of this research was that restoration interventions were apparently effective at increasing the likelihood of net CO2 sink behaviour and raising water tables on degraded, climatically marginal blanket bog. However, had water table restoration been conducted alongside revegetation then a significant decline in DOC concentrations could have also been realised.

40 CFR 403.15 - Net/Gross calculation.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 403.15 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS GENERAL PRETREATMENT REGULATIONS FOR EXISTING AND NEW SOURCES OF POLLUTION § 403.15 Net/Gross... environmental degradation will result. [70 FR 60198, Oct. 14, 2005] ...

PhysioNet: physiologic signals, time series and related open source software for basic, clinical, and applied research.

PubMed

Moody, George B; Mark, Roger G; Goldberger, Ary L

2011-01-01

PhysioNet provides free web access to over 50 collections of recorded physiologic signals and time series, and related open-source software, in support of basic, clinical, and applied research in medicine, physiology, public health, biomedical engineering and computing, and medical instrument design and evaluation. Its three components (PhysioBank, the archive of signals; PhysioToolkit, the software library; and PhysioNetWorks, the virtual laboratory for collaborative development of future PhysioBank data collections and PhysioToolkit software components) connect researchers and students who need physiologic signals and relevant software with researchers who have data and software to share. PhysioNet's annual open engineering challenges stimulate rapid progress on unsolved or poorly solved questions of basic or clinical interest, by focusing attention on achievable solutions that can be evaluated and compared objectively using freely available reference data.

NetF-producing Clostridium perfringens: Clonality and plasmid pathogenicity loci analysis.

PubMed

Mehdizadeh Gohari, Iman; Kropinski, Andrew M; Weese, Scott J; Whitehead, Ashley E; Parreira, Valeria R; Boerlin, Patrick; Prescott, John F

2017-04-01

Clostridium perfringens is an important cause of foal necrotizing enteritis and canine acute hemorrhagic diarrhea. A major virulence determinant of the strains associated with these diseases appears to be a beta-sheet pore-forming toxin, NetF, encoded within a pathogenicity locus (NetF locus) on a large tcp-conjugative plasmid. Strains producing NetF also produce the putative toxin NetE, encoded within the same pathogenicity locus, as well as CPE enterotoxin and CPB2 on a second plasmid, and sometimes the putative toxin NetG within a pathogenicity locus (NetG locus) on another separate large conjugative plasmid. Previous genome sequences of two netF-positive C. perfringens showed that they both shared three similar plasmids, including the NetF/NetE and CPE/CPB2 toxins-encoding plasmids mentioned above and a putative bacteriocin-encoding plasmid. The main purpose of this study was to determine whether all NetF-producing strains share this common plasmid profile and whether their distinct NetF and CPE pathogenicity loci are conserved. To answer this question, 15 equine and 15 canine netF-positive isolates of C. perfringens were sequenced using Illumina Hiseq2000 technology. In addition, the clonal relationships among the NetF-producing strains were evaluated by core genome multilocus sequence typing (cgMLST). The data obtained showed that all NetF-producing strains have a common plasmid profile and that the defined pathogenicity loci on the plasmids are conserved in all these strains. cgMLST analysis showed that the NetF-producing C. perfringens strains belong to two distinct clonal complexes. The pNetG plasmid was absent from isolates of one of the clonal complexes, and there were minor but consistent differences in the NetF/NetE and CPE/CPB2 plasmids between the two clonal complexes. Copyright © 2017 Elsevier B.V. All rights reserved.

Command and Control for Large-Scale Hybrid Warfare Systems

DTIC Science & Technology

2014-06-05

Prescribed by ANSI Std Z39-18 2 CK Pang et al. in C2 architectures was proposed using Petri nets (PNs).10 Liao in [11] reported an architecture for...arises from the chal- lenging and often-conflicting user requirements, scale, scope, inter-connectivity with different large-scale net - worked teams and...resources can be easily modelled and reconfigured by the notion of block matrix. At any time, the various missions of the net - worked team can be added

Inferring tidal wetland stability from channel sediment fluxes: observations and a conceptual model

USGS Publications Warehouse

Ganju, Neil K.; Nidzieko, Nicholas J.; Kirwan, Matthew L.

2013-01-01

Anthropogenic and climatic forces have modified the geomorphology of tidal wetlands over a range of timescales. Changes in land use, sediment supply, river flow, storminess, and sea level alter the layout of tidal channels, intertidal flats, and marsh plains; these elements define wetland complexes. Diagnostically, measurements of net sediment fluxes through tidal channels are high-temporal resolution, spatially integrated quantities that indicate (1) whether a complex is stable over seasonal timescales and (2) what mechanisms are leading to that state. We estimated sediment fluxes through tidal channels draining wetland complexes on the Blackwater and Transquaking Rivers, Maryland, USA. While the Blackwater complex has experienced decades of degradation and been largely converted to open water, the Transquaking complex has persisted as an expansive, vegetated marsh. The measured net export at the Blackwater complex (1.0 kg/s or 0.56 kg/m2/yr over the landward marsh area) was caused by northwesterly winds, which exported water and sediment on the subtidal timescale; tidally forced net fluxes were weak and precluded landward transport of suspended sediment from potential seaward sources. Though wind forcing also exported sediment at the Transquaking complex, strong tidal forcing and proximity to a turbidity maximum led to an import of sediment (0.031 kg/s or 0.70 kg/m2/yr). This resulted in a spatially averaged accretion of 3.9 mm/yr, equaling the regional relative sea level rise. Our results suggest that in areas where seaward sediment supply is dominant, seaward wetlands may be more capable of withstanding sea level rise over the short term than landward wetlands. We propose a conceptual model to determine a complex's tendency toward stability or instability based on sediment source, wetland channel location, and transport mechanisms. Wetlands with a reliable portfolio of sources and transport mechanisms appear better suited to offset natural and anthropogenic loss.

The Seismic Tool-Kit (STK): an open source software for seismology and signal processing.

NASA Astrophysics Data System (ADS)

Reymond, Dominique

2016-04-01

We present an open source software project (GNU public license), named STK: Seismic ToolKit, that is dedicated mainly for seismology and signal processing. The STK project that started in 2007, is hosted by SourceForge.net, and count more than 19 500 downloads at the date of writing. The STK project is composed of two main branches: First, a graphical interface dedicated to signal processing (in the SAC format (SAC_ASCII and SAC_BIN): where the signal can be plotted, zoomed, filtered, integrated, derivated, ... etc. (a large variety of IFR and FIR filter is proposed). The estimation of spectral density of the signal are performed via the Fourier transform, with visualization of the Power Spectral Density (PSD) in linear or log scale, and also the evolutive time-frequency representation (or sonagram). The 3-components signals can be also processed for estimating their polarization properties, either for a given window, or either for evolutive windows along the time. This polarization analysis is useful for extracting the polarized noises, differentiating P waves, Rayleigh waves, Love waves, ... etc. Secondly, a panel of Utilities-Program are proposed for working in a terminal mode, with basic programs for computing azimuth and distance in spherical geometry, inter/auto-correlation, spectral density, time-frequency for an entire directory of signals, focal planes, and main components axis, radiation pattern of P waves, Polarization analysis of different waves (including noize), under/over-sampling the signals, cubic-spline smoothing, and linear/non linear regression analysis of data set. A MINimum library of Linear AlGebra (MIN-LINAG) is also provided for computing the main matrix process like: QR/QL decomposition, Cholesky solve of linear system, finding eigen value/eigen vectors, QR-solve/Eigen-solve of linear equations systems ... etc. STK is developed in C/C++, mainly under Linux OS, and it has been also partially implemented under MS-Windows. Usefull links: http://sourceforge.net/projects/seismic-toolkit/ http://sourceforge.net/p/seismic-toolkit/wiki/browse_pages/

Economic Return From the Women’s Health Initiative Estrogen Plus Progestin Clinical Trial

PubMed Central

Roth, Joshua A.; Etzioni, Ruth; Waters, Teresa M.; Pettinger, Mary; Rossouw, Jacques E.; Anderson, Garnet L.; Chlebowski, Rowan T.; Manson, JoAnn E.; Hlatky, Mark; Johnson, Karen C.; Ramsey, Scott D.

2014-01-01

Background The findings of the Women’s Health Initiative (WHI) estrogen plus progestin (E+P) trial led to a substantial reduction in use of combined hormone therapy (cHT) among postmenopausal women in the United States. The economic effect of this shift has not been evaluated relative to the trial’s $260 million cost (2012 U.S. dollars). Objective To estimate the economic return from the WHI E+P trial. Design Decision model to simulate health outcomes for a “WHI scenario” with observed cHT use and a “no-WHI scenario” with cHT use extrapolated from the pretrial period. Data Sources Primary analyses of WHI outcomes, peer-reviewed literature, and government sources. Target Population Postmenopausal women in the United States, aged 50 to 79 years, who did not have a hysterectomy. Time Horizon 2003 to 2012. Perspective Payer. Intervention Combined hormone therapy. Outcome Measures Disease incidence, expenditure, quality-adjusted life-years, and net economic return. Results of Base-Case Analysis The WHI scenario resulted in 4.3 million fewer cHT users, 126 000 fewer breast cancer cases, 76 000 fewer cardiovascular disease cases, 263 000 more fractures, 145 000 more quality-adjusted life-years, and expenditure savings of $35.2 billion. The corresponding net economic return of the trial was $37.1 billion ($140 per dollar invested in the trial) at a willingness-to-pay level of $100 000 per quality-adjusted life-year. Results of Sensitivity Analysis The 95% CI for the net economic return of the trial was $23.1 to $51.2 billion. Limitation No evaluation of indirect costs or outcomes beyond 2012. Conclusion The WHI E+P trial made high-value use of public funds with a substantial return on investment. These results can contribute to discussions about the role of public funding for large, prospective trials with high potential for public health effects. Primary Funding Source National Heart, Lung, and Blood Institute. PMID:24798522

Markets, voucher subsidies and free nets combine to achieve high bed net coverage in rural Tanzania.

PubMed

Khatib, Rashid A; Killeen, Gerry F; Abdulla, Salim M K; Kahigwa, Elizeus; McElroy, Peter D; Gerrets, Rene P M; Mshinda, Hassan; Mwita, Alex; Kachur, S Patrick

2008-06-02

Tanzania has a well-developed network of commercial ITN retailers. In 2004, the government introduced a voucher subsidy for pregnant women and, in mid 2005, helped distribute free nets to under-fives in small number of districts, including Rufiji on the southern coast, during a child health campaign. Contributions of these multiple insecticide-treated net delivery strategies existing at the same time and place to coverage in a poor rural community were assessed. Cross-sectional household survey in 6,331 members of randomly selected 1,752 households of 31 rural villages of Demographic Surveillance System in Rufiji district, Southern Tanzania was conducted in 2006. A questionnaire was administered to every consenting respondent about net use, treatment status and delivery mechanism. Net use was 62.7% overall, 87.2% amongst infants (0 to 1 year), 81.8% amongst young children (>1 to 5 years), 54.5% amongst older children (6 to 15 years) and 59.6% amongst adults (>15 years). 30.2% of all nets had been treated six months prior to interview. The biggest source of nets used by infants was purchase from the private sector with a voucher subsidy (41.8%). Half of nets used by young children (50.0%) and over a third of those used by older children (37.2%) were obtained free of charge through the vaccination campaign. The largest source of nets amongst the population overall was commercial purchase (45.1% use) and was the primary means for protecting adults (60.2% use). All delivery mechanisms, especially sale of nets at full market price, under-served the poorest but no difference in equity was observed between voucher-subsidized and freely distributed nets. All three delivery strategies enabled a poor rural community to achieve net coverage high enough to yield both personal and community level protection for the entire population. Each of them reached their relevant target group and free nets only temporarily suppressed the net market, illustrating that in this setting that these are complementary rather than mutually exclusive approaches.

Agricultural peatland restoration: effects of land-use change on greenhouse gas (CO2 and CH4) fluxes in the Sacramento-San Joaquin Delta.

PubMed

Knox, Sara Helen; Sturtevant, Cove; Matthes, Jaclyn Hatala; Koteen, Laurie; Verfaillie, Joseph; Baldocchi, Dennis

2015-02-01

Agricultural drainage of organic soils has resulted in vast soil subsidence and contributed to increased atmospheric carbon dioxide (CO2) concentrations. The Sacramento-San Joaquin Delta in California was drained over a century ago for agriculture and human settlement and has since experienced subsidence rates that are among the highest in the world. It is recognized that drained agriculture in the Delta is unsustainable in the long-term, and to help reverse subsidence and capture carbon (C) there is an interest in restoring drained agricultural land-use types to flooded conditions. However, flooding may increase methane (CH4) emissions. We conducted a full year of simultaneous eddy covariance measurements at two conventional drained agricultural peatlands (a pasture and a corn field) and three flooded land-use types (a rice paddy and two restored wetlands) to assess the impact of drained to flooded land-use change on CO2 and CH4 fluxes in the Delta. We found that the drained sites were net C and greenhouse gas (GHG) sources, releasing up to 341 g C m(-2) yr(-1) as CO2 and 11.4 g C m(-2) yr(-1) as CH4. Conversely, the restored wetlands were net sinks of atmospheric CO2, sequestering up to 397 g C m(-2) yr(-1). However, they were large sources of CH4, with emissions ranging from 39 to 53 g C m(-2) yr(-1). In terms of the full GHG budget, the restored wetlands could be either GHG sources or sinks. Although the rice paddy was a small atmospheric CO2 sink, when considering harvest and CH4 emissions, it acted as both a C and GHG source. Annual photosynthesis was similar between sites, but flooding at the restored sites inhibited ecosystem respiration, making them net CO2 sinks. This study suggests that converting drained agricultural peat soils to flooded land-use types can help reduce or reverse soil subsidence and reduce GHG emissions. © 2014 John Wiley & Sons Ltd.

Air pollution radiative forcing from specific emissions sectors at 2030

NASA Astrophysics Data System (ADS)

Unger, Nadine; Shindell, Drew T.; Koch, Dorothy M.; Streets, David G.

2008-01-01

Reduction of short-lived air pollutants can contribute to mitigate global warming in the near-term with ancillary benefits to human health. However, the radiative forcings of short-lived air pollutants depend on the location and source type of the precursor emissions. We apply the Goddard Institute for Space Studies atmospheric composition-climate model to quantify near-future (2030 A1B) global annual mean radiative forcing by ozone (O3) and sulfate from six emissions sectors in seven geographic regions. At 2030 the net forcings from O3, sulfate, black and organic carbon, and indirect CH4 effects for each emission sector are (in mWm-2) biomass burning, +95; domestic, +68; transportation, +67; industry, -131; and power, -224. Biomass burning emissions in East Asia and central and southern Africa, domestic biofuel emissions in East Asia, south Asia, and central and southern Africa, and transportation emissions in Europe and North America have large net positive forcings and are therefore attractive targets to counter global warming. Power and industry emissions from East Asia, south Asia, and north Africa and the Middle East have large net negative forcings. Therefore air quality control measures that affect these regional sectors require offsetting climate measures to avoid a warming impact. Linear relationships exist between O3 forcing and biomass burning and domestic biofuel CO precursor emissions independent of region with sensitivity of +0.2 mWm-2/TgCO. Similarly, linear relationships exist between sulfate forcing and SO2 precursor emissions that depend upon region but are independent of sector with sensitivities ranging from -3 to -12 mWm-2/TgS.

PANDORA: keyword-based analysis of protein sets by integration of annotation sources.

PubMed

Kaplan, Noam; Vaaknin, Avishay; Linial, Michal

2003-10-01

Recent advances in high-throughput methods and the application of computational tools for automatic classification of proteins have made it possible to carry out large-scale proteomic analyses. Biological analysis and interpretation of sets of proteins is a time-consuming undertaking carried out manually by experts. We have developed PANDORA (Protein ANnotation Diagram ORiented Analysis), a web-based tool that provides an automatic representation of the biological knowledge associated with any set of proteins. PANDORA uses a unique approach of keyword-based graphical analysis that focuses on detecting subsets of proteins that share unique biological properties and the intersections of such sets. PANDORA currently supports SwissProt keywords, NCBI Taxonomy, InterPro entries and the hierarchical classification terms from ENZYME, SCOP and GO databases. The integrated study of several annotation sources simultaneously allows a representation of biological relations of structure, function, cellular location, taxonomy, domains and motifs. PANDORA is also integrated into the ProtoNet system, thus allowing testing thousands of automatically generated clusters. We illustrate how PANDORA enhances the biological understanding of large, non-uniform sets of proteins originating from experimental and computational sources, without the need for prior biological knowledge on individual proteins.

A Study of NetCDF as an Approach for High Performance Medical Image Storage

NASA Astrophysics Data System (ADS)

Magnus, Marcone; Coelho Prado, Thiago; von Wangenhein, Aldo; de Macedo, Douglas D. J.; Dantas, M. A. R.

2012-02-01

The spread of telemedicine systems increases every day. The systems and PACS based on DICOM images has become common. This rise reflects the need to develop new storage systems, more efficient and with lower computational costs. With this in mind, this article discusses a study for application in NetCDF data format as the basic platform for storage of DICOM images. The study case comparison adopts an ordinary database, the HDF5 and the NetCDF to storage the medical images. Empirical results, using a real set of images, indicate that the time to retrieve images from the NetCDF for large scale images has a higher latency compared to the other two methods. In addition, the latency is proportional to the file size, which represents a drawback to a telemedicine system that is characterized by a large amount of large image files.

Scheduling multirobot operations in manufacturing by truncated Petri nets

NASA Astrophysics Data System (ADS)

Chen, Qin; Luh, J. Y.

1995-08-01

Scheduling of operational sequences in manufacturing processes is one of the important problems in automation. Methods of applying Petri nets to model and analyze the problem with constraints on precedence relations, multiple resources allocation, etc. have been available in literature. Searching for an optimum schedule can be implemented by combining the branch-and-bound technique with the execution of the timed Petri net. The process usually produces a large Petri net which is practically not manageable. This disadvantage, however, can be handled by a truncation technique which divides the original large Petri net into several smaller size subnets. The complexity involved in the analysis of each subnet individually is greatly reduced. However, when the locally optimum schedules of the resulting subnets are combined together, it may not yield an overall optimum schedule for the original Petri net. To circumvent this problem, algorithms are developed based on the concepts of Petri net execution and modified branch-and-bound process. The developed technique is applied to a multi-robot task scheduling problem of the manufacturing work cell.

Simulating the hydrologic cycle in coal mining subsidence areas with a distributed hydrologic model

PubMed Central

Wang, Jianhua; Lu, Chuiyu; Sun, Qingyan; Xiao, Weihua; Cao, Guoliang; Li, Hui; Yan, Lingjia; Zhang, Bo

2017-01-01

Large-scale ground subsidence caused by coal mining and subsequent water-filling leads to serious environmental problems and economic losses, especially in plains with a high phreatic water level. Clarifying the hydrologic cycle in subsidence areas has important practical value for environmental remediation, and provides a scientific basis for water resource development and utilisation of the subsidence areas. Here we present a simulation approach to describe interactions between subsidence area water (SW) and several hydrologic factors from the River-Subsidence-Groundwater Model (RSGM), which is developed based on the distributed hydrologic model. Analysis of water balance shows that the recharge of SW from groundwater only accounts for a small fraction of the total water source, due to weak groundwater flow in the plain. The interaction between SW and groundwater has an obvious annual cycle. The SW basically performs as a net source of groundwater in the wet season, and a net sink for groundwater in the dry season. The results show there is an average 905.34 million m3 per year of water available through the Huainan coal mining subsidence areas (HCMSs). If these subsidence areas can be integrated into water resource planning, the increasingly precarious water supply infrastructure will be strengthened. PMID:28106048

Anticipated Improvements to Net Surface Freshwater Fluxes from GPM

NASA Technical Reports Server (NTRS)

Smith, Eric A.

2005-01-01

Evaporation and precipitation over the oceans play very important roles in the global water cycle, upper-ocean heat budget, ocean dynamics, and coupled ocean-atmosphere dynamics. In the conventional representation of the terrestrial water cycle, the assumed role of the oceans is to act as near-infinite reservoirs of water with the main drivers of the water cycle being land- atmosphere interactions in which excess precipitation (P) over evaporation (E) is returned to the oceans as surface runoff and baseflow. Whereas this perspective is valid for short space and time scales -- fundamental principles, available observed estimates, and results from models indicate that the oceans play a far more important role in the large-scale water cycle at seasonal and longer timescales. Approximately 70-80% of the total global evaporation and precipitation occurs over oceans. Moreover, latent heat release into the atmosphere over the oceans is the major heat source driving global atmospheric circulations, with the moisture transported by circulations from oceans to continents being the major source of water precipitating over land. Notably, the major impediment in understanding and modeling the oceans role in the global water cycle is the lack of reliable net surface freshwater flux estimates (E - P fluxes) at the salient spatial and temporal resolutions, i.e., consistent coupled weekly to monthly E - P gridded datasets.

Patterns of species range evolution in Indo-Pacific reef assemblages reveal the Coral Triangle as a net source of transoceanic diversity.

PubMed

Evans, Sean M; McKenna, Caroline; Simpson, Stephen D; Tournois, Jennifer; Genner, Martin J

2016-06-01

The Coral Triangle in the Indo-Pacific is a region renowned for exceptional marine biodiversity. The area could have acted as a 'centre of origin' where speciation has been prolific or a 'centre of survival' by providing refuge during major environmental shifts such as sea-level changes. The region could also have acted as a 'centre of accumulation' for species with origins outside of the Coral Triangle, owing to it being at a central position between the Indian and Pacific oceans. Here, we investigated support for these hypotheses using population-level DNA sequence-based reconstructions of the range evolution of 45 species (314 populations) of Indo-Pacific reef-associated organisms. Our results show that populations undergoing the most ancient establishment were significantly more likely to be closer to the centre of the Coral Triangle than to peripheral locations. The data are consistent with the Coral Triangle being a net source of coral-reef biodiversity for the Indo-Pacific region, suggesting that the region has acted primarily as a centre of survival, a centre of origin or both. These results provide evidence of how a key location can influence the large-scale distributions of biodiversity over evolutionary timescales. © 2016 The Authors.

Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.

PubMed

Adalsteinsson, David; McMillen, David; Elston, Timothy C

2004-03-08

Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true for pathways that involve transcriptional regulation, where generally there are two copies of each gene and the number of messenger RNA (mRNA) molecules can be small. Therefore, there is a need for computational tools for developing and investigating stochastic models of biochemical networks. We have developed the software package Biochemical Network Stochastic Simulator (BioNetS) for efficiently and accurately simulating stochastic models of biochemical networks. BioNetS has a graphical user interface that allows models to be entered in a straightforward manner, and allows the user to specify the type of random variable (discrete or continuous) for each chemical species in the network. The discrete variables are simulated using an efficient implementation of the Gillespie algorithm. For the continuous random variables, BioNetS constructs and numerically solves the appropriate chemical Langevin equations. The software package has been developed to scale efficiently with network size, thereby allowing large systems to be studied. BioNetS runs as a BioSpice agent and can be downloaded from http://www.biospice.org. BioNetS also can be run as a stand alone package. All the required files are accessible from http://x.amath.unc.edu/BioNetS. We have developed BioNetS to be a reliable tool for studying the stochastic dynamics of large biochemical networks. Important features of BioNetS are its ability to handle hybrid models that consist of both continuous and discrete random variables and its ability to model cell growth and division. We have verified the accuracy and efficiency of the numerical methods by considering several test systems.

Effect of geological carbon sources on eddy covariance measurements: analysis and possible correction approaches

NASA Astrophysics Data System (ADS)

Papale, D.; Rey, A.; Belelli-Marchesini, L.; Etiope, G.; Pegoraro, E.

2013-12-01

A recent set of studies carried out in the SE of Spain highlighted the need to consider geological carbon sources when estimating the net ecosystem carbon balance (NECB) of terrestrial ecosystems located in areas potentially affected by geofluid circulation. In this study we present the mechanisms and propose a new methodology using physical parameters of the atmospheric boundary layer to quantify the CO2 coming from deep origin. To test our approach, we compare NECB estimates with seasonal patterns of soil CO2 efflux and vegetation activity measured by satellite images (NDVI) over two-year period at this site (2007/2008). According with the eddy covariance measurements the alpha grass ecosystem was a net carbon source (93.7 and 145.0 g C m-2, for the years 2007 and 2008, respectively) particularly as a result of large amounts of carbon released over the dry period. This relevant CO2 emission (reaching up to 15 umol m-2 s-1) was however not related to ecosystem activities as confirmed by measurements of soil CO2 efflux using chambers (ca. 0.5 umol m-2 s-1) and plant productivity that was minimal during this period. A simple correction based on a linear relationship between NECB and wind speed for different stability conditions and wind sectors has been used to estimate the geological flux FGEO and subtracted it from the NECB to obtain the biological flux FBIO. We then partitioned FBIO into gross primary productivity and ecosystem respiration and proved that, after removing FGEO, ecosystem and soil respiration followed similar temporal patterns. The annual contribution of the geological component to NECB was 49.6 and 46.7 % for the year 2007 and 2008, respectively. Therefore, potential contribution of geological carbon sources should be tested and quantified in those ecosystems located in areas with potential natural emission of geologic gases to the surface. References: REY A., BELELLI MARCHESINI L., WERE A., SERRANO ORTIZ P., ETIOPE G., PAPALE D, DOMINGO F., PEGORARO E. (2012). Wind as a main driver of the net ecosystem carbon balance of a semiarid Mediterranean steppe in the South East of Spain. GLOBAL CHANGE BIOLOGY, vol. 18, p. 539-554 REY A., ETIOPE G., BELELLI-MARCHESINI L., PAPALE D, VALENTINI R. (2012). Geologic carbon sources may confound ecosystem carbon balance estimates: Evidence from a semiarid steppe in the southeast of Spain. JOURNAL OF GEOPHYSICAL RESEARCH. BIOGEOSCIENCES, vol. 117 REY A., BELELLI-MARCHESINI L., ETIOPE G., PAPALE D., CANFORA E., VALENTINI R., PEGORARO E. (2013) Partitioning the net ecosystem carbon balance of a semiarid steppe into biological and geological carbon components. BIOGEOCHEMISTRY, (in review)

Spectrum of Gastroenteropancreatic NENs in Routine Histological Examinations of Bioptic and Surgical Specimen: A Study of 161 Cases Collected from 17 Departments of Pathology in the Czech Republic

PubMed Central

Mandys, Václav

2014-01-01

Objective. To characterize GEP-NENs in routine biopsies and surgical specimen in the Czech Republic and to evaluate how WHO Classification (2010) is acceptable in diagnostic practice. Methods. Paraffin-embedded blocks and bioptic reports were collected from 17 departments of pathology. Histologic slides were stained with H&E and immunohistologically for CgA, synaptophysin, and Ki-67. Results. Out of 28 gastric NENs, there were 22 NETs, G1, 5 NETs, G2, and 1 NEC. Ten duodenal NENs were NETs, G1. Among 27 NENs of jejunum and ileum, 23 were NETs, G1, 2 NETs, G2, and 1 NEC and 1 mixed adenoneuroendocrine carcinoma (MANEC). Among 42 appendiceal “incidentalomas”, 39 were NETs G1, 2 goblet cell carcinoids, and 1 MANEC. Out of 34 large intestinal NENs, 30 were NETs, G1, 3 NETs, G2, and 1 NEC. One small intestinal and 6 large bowel neoplasms were reclassified as poorly differentiated adenocarcinomas. In 12 pancreatic NENs, there were 7 NETs, G1, 3 NETs, G2, and 2 NECs. Conclusions. Our study demonstrates differences in GEP-NENs frequency in sites of origin in our region, comparing to other countries. Regarding routine bioptic diagnostics, we gave evidence that the WHO 2010 classification of NENs is fully acceptable for exact categorisation of tumours. PMID:24695372

Automated Determination of Magnitude and Source Length of Large Earthquakes

NASA Astrophysics Data System (ADS)

Wang, D.; Kawakatsu, H.; Zhuang, J.; Mori, J. J.; Maeda, T.; Tsuruoka, H.; Zhao, X.

2017-12-01

Rapid determination of earthquake magnitude is of importance for estimating shaking damages, and tsunami hazards. However, due to the complexity of source process, accurately estimating magnitude for great earthquakes in minutes after origin time is still a challenge. Mw is an accurate estimate for large earthquakes. However, calculating Mw requires the whole wave trains including P, S, and surface phases, which takes tens of minutes to reach stations at tele-seismic distances. To speed up the calculation, methods using W phase and body wave are developed for fast estimating earthquake sizes. Besides these methods that involve Green's Functions and inversions, there are other approaches that use empirically simulated relations to estimate earthquake magnitudes, usually for large earthquakes. The nature of simple implementation and straightforward calculation made these approaches widely applied at many institutions such as the Pacific Tsunami Warning Center, the Japan Meteorological Agency, and the USGS. Here we developed an approach that was originated from Hara [2007], estimating magnitude by considering P-wave displacement and source duration. We introduced a back-projection technique [Wang et al., 2016] instead to estimate source duration using array data from a high-sensitive seismograph network (Hi-net). The introduction of back-projection improves the method in two ways. Firstly, the source duration could be accurately determined by seismic array. Secondly, the results can be more rapidly calculated, and data derived from farther stations are not required. We purpose to develop an automated system for determining fast and reliable source information of large shallow seismic events based on real time data of a dense regional array and global data, for earthquakes that occur at distance of roughly 30°- 85° from the array center. This system can offer fast and robust estimates of magnitudes and rupture extensions of large earthquakes in 6 to 13 min (plus source duration time) depending on the epicenter distances. It may be a promising aid for disaster mitigation right after a damaging earthquake, especially when dealing with the tsunami evacuation and emergency rescue.

Automated Determination of Magnitude and Source Extent of Large Earthquakes

NASA Astrophysics Data System (ADS)

Wang, Dun

2017-04-01

Rapid determination of earthquake magnitude is of importance for estimating shaking damages, and tsunami hazards. However, due to the complexity of source process, accurately estimating magnitude for great earthquakes in minutes after origin time is still a challenge. Mw is an accurate estimate for large earthquakes. However, calculating Mw requires the whole wave trains including P, S, and surface phases, which takes tens of minutes to reach stations at tele-seismic distances. To speed up the calculation, methods using W phase and body wave are developed for fast estimating earthquake sizes. Besides these methods that involve Green's Functions and inversions, there are other approaches that use empirically simulated relations to estimate earthquake magnitudes, usually for large earthquakes. The nature of simple implementation and straightforward calculation made these approaches widely applied at many institutions such as the Pacific Tsunami Warning Center, the Japan Meteorological Agency, and the USGS. Here we developed an approach that was originated from Hara [2007], estimating magnitude by considering P-wave displacement and source duration. We introduced a back-projection technique [Wang et al., 2016] instead to estimate source duration using array data from a high-sensitive seismograph network (Hi-net). The introduction of back-projection improves the method in two ways. Firstly, the source duration could be accurately determined by seismic array. Secondly, the results can be more rapidly calculated, and data derived from farther stations are not required. We purpose to develop an automated system for determining fast and reliable source information of large shallow seismic events based on real time data of a dense regional array and global data, for earthquakes that occur at distance of roughly 30°- 85° from the array center. This system can offer fast and robust estimates of magnitudes and rupture extensions of large earthquakes in 6 to 13 min (plus source duration time) depending on the epicenter distances. It may be a promising aid for disaster mitigation right after a damaging earthquake, especially when dealing with the tsunami evacuation and emergency rescue.

NetProt: Complex-based Feature Selection.

PubMed

Goh, Wilson Wen Bin; Wong, Limsoon

2017-08-04

Protein complex-based feature selection (PCBFS) provides unparalleled reproducibility with high phenotypic relevance on proteomics data. Currently, there are five PCBFS paradigms, but not all representative methods have been implemented or made readily available. To allow general users to take advantage of these methods, we developed the R-package NetProt, which provides implementations of representative feature-selection methods. NetProt also provides methods for generating simulated differential data and generating pseudocomplexes for complex-based performance benchmarking. The NetProt open source R package is available for download from https://github.com/gohwils/NetProt/releases/ , and online documentation is available at http://rpubs.com/gohwils/204259 .

Accelerating Exploitation of Low-grade Intelligence through Semantic Text Processing of Social Media

DTIC Science & Technology

2013-06-01

importance as an information source. The brevity of social media content (e.g., 140 characters per tweet) combined with the increasing usage of mobile...platform imports unstructured text from a variety of sources and then maps the text to an existing ontology of frames (FrameNet, https...framenet.icsi.berkeley.edu/fndrupal/) during a process of Semantic Role Labeling ( SRL ). FrameNet is a structured language model grounded in the theory of Frame

Large membrane “Furoshiki Satellite” applied to phased array antenna and its sounding rocket experiment

NASA Astrophysics Data System (ADS)

Nakasuka, Shinichi; Funase, Ryu; Nakada, Kenji; Kaya, Nobuyuki; Mankins, John C.

2006-04-01

University of Tokyo and Kobe University are planning a sounding rocket experiment of large membrane "Furoshiki Satellite" extension and large phased array RF transmission. The paper will describe the concept of "Furoshiki Satellite," its application to phased array antenna, and the scenario of micro gravity experiment using a small sounding rocket. University of Tokyo has been proposing the idea of "Furoshiki Satellite," a large membrane or a net structure, say 1km×1km in size, extended by satellites which hold its corners. The attitude and the shape of the membrane or net structure is controlled by these corner satellites. As one application of Furoshiki Satellite, a large phased array antenna can be configured by several RF transmitters placed on several parts of the large net structure. It is difficult to control the position and attitude of the RF transmitters precisely, but using the "retro-directive" method, the tolerance of such position and attitude disturbance will be relaxed by large. This is one of promising systems' concept of the future large solar power satellite or large antenna, because quite a large area can be obtained without any hard structure, and the weight will not depend very much on the size [S. Motohashi, T. Nagamura, Large scaled membrane structure Furoshiki Satellite—its concept and orbital/attitude dynamics, in: Proceedings of 20th International Symposium on Space Technology and Science (ISTS), 1996, p. 96-n-14]. To demonstrate the feasibility of the extension of large net structure and phased array performance, micro-gravity experiment is planned using a sounding rocket of ISAS/JAXA, Japan.

Sequence of Two Plasmids from Clostridium perfringens Chicken Necrotic Enteritis Isolates and Comparison with C. perfringens Conjugative Plasmids

PubMed Central

Parreira, Valeria R.; Costa, Marcio; Eikmeyer, Felix; Blom, Jochen; Prescott, John F.

2012-01-01

Twenty-six isolates of Clostridium perfringens of different MLST types from chickens with necrotic enteritis (NE) (15 netB-positive) or from healthy chickens (6 netB-positive, 5 netB-negative) were found to contain 1–4 large plasmids, with most netB-positive isolates containing 3 large and variably sized plasmids which were more numerous and larger than plasmids in netB-negative isolates. NetB and cpb2 were found on different plasmids consistent with previous studies. The pathogenicity locus NELoc1, which includes netB, was largely conserved in these plasmids whereas NeLoc3, present in the cpb2 containing plasmids, was less well conserved. A netB-positive and a cpb2-positive plasmid were likely to be conjugative, and the plasmids were completely sequenced. Both plasmids possessed the intact tcp conjugative region characteristic of C. perfringens conjugative plasmids. Comparative genomic analysis of nine CpCPs, including the two plasmids described here, showed extensive gene rearrangements including pathogenicity locus and accessory gene insertions around rather than within the backbone region. The pattern that emerges from this analysis is that the major toxin-containing regions of the variety of virulence-associated CpCPs are organized as complex pathogenicity loci. How these different but related CpCPs can co-exist in the same host has been an unanswered question. Analysis of the replication-partition region of these plasmids suggests that this region controls plasmid incompatibility, and that CpCPs can be grouped into at least four incompatibility groups. PMID:23189158

Sequence of two plasmids from Clostridium perfringens chicken necrotic enteritis isolates and comparison with C. perfringens conjugative plasmids.

PubMed

Parreira, Valeria R; Costa, Marcio; Eikmeyer, Felix; Blom, Jochen; Prescott, John F

2012-01-01

Twenty-six isolates of Clostridium perfringens of different MLST types from chickens with necrotic enteritis (NE) (15 netB-positive) or from healthy chickens (6 netB-positive, 5 netB-negative) were found to contain 1-4 large plasmids, with most netB-positive isolates containing 3 large and variably sized plasmids which were more numerous and larger than plasmids in netB-negative isolates. NetB and cpb2 were found on different plasmids consistent with previous studies. The pathogenicity locus NELoc1, which includes netB, was largely conserved in these plasmids whereas NeLoc3, present in the cpb2 containing plasmids, was less well conserved. A netB-positive and a cpb2-positive plasmid were likely to be conjugative, and the plasmids were completely sequenced. Both plasmids possessed the intact tcp conjugative region characteristic of C. perfringens conjugative plasmids. Comparative genomic analysis of nine CpCPs, including the two plasmids described here, showed extensive gene rearrangements including pathogenicity locus and accessory gene insertions around rather than within the backbone region. The pattern that emerges from this analysis is that the major toxin-containing regions of the variety of virulence-associated CpCPs are organized as complex pathogenicity loci. How these different but related CpCPs can co-exist in the same host has been an unanswered question. Analysis of the replication-partition region of these plasmids suggests that this region controls plasmid incompatibility, and that CpCPs can be grouped into at least four incompatibility groups.

NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.

PubMed

Levy, Roie; Carr, Rogan; Kreimer, Anat; Freilich, Shiri; Borenstein, Elhanan

2015-05-17

Host-microbe and microbe-microbe interactions are often governed by the complex exchange of metabolites. Such interactions play a key role in determining the way pathogenic and commensal species impact their host and in the assembly of complex microbial communities. Recently, several studies have demonstrated how such interactions are reflected in the organization of the metabolic networks of the interacting species, and introduced various graph theory-based methods to predict host-microbe and microbe-microbe interactions directly from network topology. Using these methods, such studies have revealed evolutionary and ecological processes that shape species interactions and community assembly, highlighting the potential of this reverse-ecology research paradigm. NetCooperate is a web-based tool and a software package for determining host-microbe and microbe-microbe cooperative potential. It specifically calculates two previously developed and validated metrics for species interaction: the Biosynthetic Support Score which quantifies the ability of a host species to supply the nutritional requirements of a parasitic or a commensal species, and the Metabolic Complementarity Index which quantifies the complementarity of a pair of microbial organisms' niches. NetCooperate takes as input a pair of metabolic networks, and returns the pairwise metrics as well as a list of potential syntrophic metabolic compounds. The Biosynthetic Support Score and Metabolic Complementarity Index provide insight into host-microbe and microbe-microbe metabolic interactions. NetCooperate determines these interaction indices from metabolic network topology, and can be used for small- or large-scale analyses. NetCooperate is provided as both a web-based tool and an open-source Python module; both are freely available online at http://elbo.gs.washington.edu/software_netcooperate.html.

Terra Populus and DataNet Collaboration

NASA Astrophysics Data System (ADS)

Kugler, T.; Ruggles, S.; Fitch, C. A.; Clark, P. D.; Sobek, M.; Van Riper, D.

2012-12-01

Terra Populus, part of NSF's new DataNet initiative, is developing organizational and technical infrastructure to integrate, preserve, and disseminate data describing changes in the human population and environment over time. Terra Populus will incorporate large microdata and aggregate census datasets from the United States and around the world, as well as land use, land cover, climate and other environmental datasets. These data are widely dispersed, exist in a variety of data structures, have incompatible or inadequate metadata, and have incompatible geographic identifiers. Terra Populus is developing methods of integrating data from different domains and translating across data structures based on spatio-temporal linkages among data contents. The new infrastructure will enable researchers to identify and merge data from heterogeneous sources to study the relationships between human behavior and the natural world. Terra Populus will partner with data archives, data producers, and data users to create a sustainable international organization that will guarantee preservation and access over multiple decades. Terra Populus is also collaborating with the other projects in the DataNet initiative - DataONE, the DataNet Federation Consortium (DFC) and Sustainable Environment-Actionable Data (SEAD). Taken together, the four projects address aspects of the entire data lifecycle, including planning, collection, documentation, discovery, integration, curation, preservation, and collaboration; and encompass a wide range of disciplines including earth sciences, ecology, social sciences, hydrology, oceanography, and engineering. The four projects are pursuing activities to share data, tools, and expertise between pairs of projects as well as collaborating across the DataNet program on issues of cyberinfrastructure and community engagement. Topics to be addressed through program-wide collaboration include technical, organizational, and financial sustainability; semantic integration; data management training and education; and cross-disciplinary awareness of data resources.

Retrofitting impervious urban infrastructure with green technology for rainfall-runoff restoration, indirect reuse and pollution load reduction.

PubMed

Sansalone, John; Raje, Saurabh; Kertesz, Ruben; Maccarone, Kerrilynn; Seltzer, Karl; Siminari, Michele; Simms, Peter; Wood, Brandon

2013-12-01

The built environs alter hydrology and water resource chemistry. Florida is subject to nutrient criteria and is promulgating "no-net-load-increase" criteria for runoff and constituents (nutrients and particulate matter, PM). With such criteria, green infrastructure, hydrologic restoration, indirect reuse and source control are potential design solutions. The study simulates runoff and constituent load control through urban source area re-design to provide long-term "no-net-load-increases". A long-term continuous simulation of pre- and post-development response for an existing surface parking facility is quantified. Retrofits include a biofiltration area reactor (BAR) for hydrologic and denitrification control. A linear infiltration reactor (LIR) of cementitious permeable pavement (CPP) provides infiltration, adsorption and filtration. Pavement cleaning provided source control. Simulation of climate and source area data indicates re-design achieves "no-net-load-increases" at lower costs compared to standard construction. The retrofit system yields lower cost per nutrient load treated compared to Best Management Practices (BMPs). Copyright © 2013 Elsevier Ltd. All rights reserved.

Scaling net ecosystem production and net biome production over a heterogeneous region in the Western United States

Treesearch

D.P. Turner; W.D. Ritts; B.E. Law; W.B. Cohen; Z. Yan; T. Hudiburg; J.L. Campbell; M. Duane

2007-01-01

Bottom-up scaling of net ecosystem production (NEP) and net biome production (NBP) was used to generate a carbon budget for a large heterogeneous region (the state of Oregon, 2.5x105 km2 ) in the Western United States. Landsat resolution (30 m) remote sensing provided the basis for mapping land cover and disturbance history...

Ontology based standardization of Petri net modeling for signaling pathways.

PubMed

Takai-Igarashi, Takako

2005-01-01

Taking account of the great availability of Petri nets in modeling and analyzing large complicated signaling networks, semantics of Petri nets is in need of systematization for the purpose of consistency and reusability of the models. This paper reports on standardization of units of Petri nets on the basis of an ontology that gives an intrinsic definition to the process of signaling in signaling pathways.

Ontology based standardization of petri net modeling for signaling pathways.

PubMed

Takai-Igarashi, Takako

2011-01-01

Taking account of the great availability of Petri nets in modeling and analyzing large complicated signaling networks, semantics of Petri nets is in need of systematization for the purpose of consistency and reusability of the models. This paper reports on standardization of units of Petri nets on the basis of an ontology that gives an intrinsic definition to the process of signaling in signaling pathways.

The urban atmosphere as a non-point source for the transport of MTBE and other volatile organic compounds (VOCS) to shallow groundwater

USGS Publications Warehouse

Pankow, J.F.; Thomson, N.R.; Johnson, Richard L.; Baehr, A.L.; Zogorski, J.S.

1997-01-01

Infiltration and dispersion (including molecular diffusion) can transport volatile organic compounds (VOCs) from urban air into shallow groundwater. The gasoline additive methyl-tert-butyl ether (MTBE) is of special interest because of its (1) current levels in some urban air, (2) strong partitioning from air into water, (3) resistance to degradation, (4) use as an octane-booster since the 1970s, (5) rapidly increasing use in the 1990s to reduce CO and O3 in urban air, and (6) its frequent detection at low microgram per liter levels in shallow urban groundwater in Denver, New England, and elsewhere. Numerical simulations were conducted using a 1-D model domain set in medium sand (depth to water table = 5 m) to provide a test of whether MTBE and other atmospheric VOCs could move to shallow groundwater within the 10−15 y time frame over which MTBE has now been used in large amounts. Degradation and sorption were assumed negligible. In case 1 (no infiltration, steady atmospheric source), 10 y was not long enough to permit significant VOC movement by diffusion into shallow groundwater. Case 2 considered a steady atmospheric source plus 36 cm/y of net infiltration; groundwater at 2 m below the water table became nearly saturated with atmospheric levels of VOC within 5 y. Case 3 was similar to case 2, but considered the source to be seasonal, being “on” for only 5 of 12 months each year, as with the use of MTBE during the winter fuel-oxygenate season; groundwater at 2 m below the water table became equilibrated with 5/12 of the “source-on” concentration within 5 y. Cases 4 and 5 added an evapotranspiration (ET) loss of 36 cm/y, resulting in no net recharge. Case 4 took the ET from the surface, and case 5 took the ET from the capillary fringe at a depth of 3.5 m. Net VOC mass transfer to shallow groundwater after 5 y was less for both cases 4 and 5 than for case 3. However, it was significantly greater for cases 4 and 5 than for case 1, even though cases 1, 4, and 5 were all no-net recharge cases. The mechanism responsible for this effect was the dispersion acting on each downward infiltration event, and also on the ET-induced flow. The ability of MTBE to reach groundwater in cases 2−5 is taken as evidence of the potential importance of urban air as a non-point source for VOCs in shallow urban groundwater. Two subcases were run for both case 4 and case 5:  subcase a (water and VOCs move with ET) and subcase b (water only moves with ET).

Impact of precipitation dynamics on net ecosystem exchange

USDA-ARS?s Scientific Manuscript database

Net ecosystem carbon dioxide (CO2) exchange (NEE) was measured on shortgrass steppe (SGS) vegetation at the USDA Central Plains Experimental Range in northeastern Colorado from 2001-2003. Large year-to-year differences were observed in annual NEE, with > 95% of the net carbon uptake occurring during...

Greenhouse gas emissions of different land uses in the delta region of Red River, Vietnam

NASA Astrophysics Data System (ADS)

Zhou, Minghua; Ha, Thu; An, Ngo The; Brüggemann, Nicolas

2017-04-01

Agricultural activities are responsible for up to a third of total anthropogenic GHG emissions. The subtropical/tropical delta areas of the large rivers in Southeast Asia are long-term history agricultural regions in the world. However, due to lack of field measurements, the estimation of the contribution of agro-ecosystems in the subtropical/tropical delta areas to global greenhouse gas emissions remains largely uncertain. Here, we conducted field experiments since January 2016 to quantify greenhouse gases (CO2, CH4 and N2O) emissions from four agricultural land uses of annual rice-rice, rice-vegetable, continuous vegetable system and fish pond in Red River delta region of Vietnam by using the transparent static chamber-gas chromatography technique. Higher N2O emissions were observed in the rice-vegetable and continuous vegetable systems, while lower N2O emissions were observed in the rice-rice and find pond systems. Compared to rice-rice system the cumulative N2O fluxes were on average twenty-fold higher in the rice-vegetable and continuous vegetable systems but significantly lower (75%) in the fish pond. Overall the net CO2 sinks were observed in the rice-rice system while other three land uses of rice-vegetable, continuous vegetable and fish pond acted as the net CO2 sources. The rice-rice and fish pond showed net CH4 emissions while variations of CH4 emissions (i.e. shifting between sources and sinks) along variations of soil moisture and temperature were observed in rice-vegetable and continuous vegetable systems. Compared to rice-rice system, the cumulative CH4 fluxes were significantly decreased by 100% for continuous vegetable system, 94% for rice-vegetable system and 89% for fish pond. Overall, the data suggest that conversion of traditional rice-rice paddy system to rice-vegetable, continuous vegetable system and find pond, which are currently undergoing driven by the economical requests and environmental changes (e.g., salinity intrusion) in this delta region, could alter CH4, CO2 and N2O emissions.

Opportunities and trade-offs of biomass based negative emissions within planetary boundaries

NASA Astrophysics Data System (ADS)

Heck, Vera; Gerten, Dieter; Lucht, Wolfgang

2017-04-01

The Paris Agreement requires "a balance between anthropogenic emissions by sources and removals by sinks of greenhouse gases in the second half of the century" (UNFCCC, 2015). Without a full decarbonization of the energy and land use sector until the second half of this century, negative emission technologies (NETs) are required to achieve net zero greenhouse gas emissions. Integrated assessment studies indicate that bioenergy with carbon capture and storage (BECCS), a land based NET, has the potential to contribute substantially to balancing anthropogenic fossil fuel emissions. However, significant negative emission potentials from BECCS require substantial biomass potentials, which can only be achieved by intensively managed (fertilized and irrigated) large-scale biomass plantations. Additional to direct trade-offs of land and water availability, the implementation of large-scale biomass plantations implies major restructuring of the land surface on top of existing land use and would be accompanied by indirect trade-offs such as changes in moisture and energy fluxes. In the context of the planetary boundaries framework as proposed by Rockström et al. (2009), BECCS might contribute to reduce the transgression of the planetary boundary (PB) for climate change, but would most likely steer the Earth system closer to the PB for freshwater use and lead to further transgression of the PBs for land system change, biosphere integrity and biogeochemical flows. This presentation will investigate the opportunities of second generation biomass potentials within the safe operating space for humanity and highlight the multidimensional trade-offs between biomass potentials for BECCS in relation to the PBs. Scenarios of land availability for biomass plantations and land based carbon sequestration were developed with a spatially explicit multi-criterial optimization framework, considering the precautionary need to stay within the safe operating space vis-à-vis the need to sustain food supply. References: UNFCCC. Adoption of the Paris Agreement, FCCC/CP/2015/L.9/Rev1, United Nations Framework Convention on Climate Change (2015). J. Rockström et al., A safe operating space for humanity. Nature 461 (7263), 472-475 (2009) Without a full ecarbonization of the energy and land use sector, nes are required to balance sinks and sources according

A Problem-Solving Environment for Biological Network Informatics: Bio-Spice

DTIC Science & Technology

2007-06-01

user an environment to access software tools. The Dashboard is built upon the NetBeans Integrated Development Environment (IDE), an open source Java...based integration platform was demonstrated. During the subsequent six month development cycle, the first version of the NetBeans based Bio-SPICE...frameworks (OAA, NetBeans , and Systems Biology Workbench (SBW)[15]), it becomes possible for Bio-SPICE tools to truly interoperate. This interoperation

Learning Management Platform for CyberCIEGE

DTIC Science & Technology

2011-12-01

developments were done using the NetBeans Integrated Development Environment (IDE) 7.0, which is a free and open source IDE. Some of these...developments could be implemented using the GUI design features of NetBeans . However, it was not done so because the existing Campaign Analyzer code base...directory through a dialog window. Also, the existing directory structures are not consistent with NetBeans project management assumptions and thus

Comparing the net cost of CSP-TES to PV deployed with battery storage

NASA Astrophysics Data System (ADS)

Jorgenson, Jennie; Mehos, Mark; Denholm, Paul

2016-05-01

Concentrated solar power with thermal energy storage (CSP-TES) is a unique source of renewable energy in that its energy can be shifted over time and it can provide the electricity system with dependable generation capacity. In this study, we provide a framework to determine if the benefits of CSP-TES (shiftable energy and the ability to provide firm capacity) exceed the benefits of PV and firm capacity sources such as long-duration battery storage or conventional natural gas combustion turbines (CTs). The results of this study using current capital cost estimates indicate that a combination of PV and conventional gas CTs provides a lower net cost compared to CSP-TES and PV with batteries. Some configurations of CSP-TES have a lower net cost than PV with batteries for even the lowest battery cost estimate. Using projected capital cost targets, however, some configurations of CSP-TES have a lower net cost than PV with either option for even the lowest battery cost estimate. The net cost of CSP-TES varies with configuration, and lower solar multiples coupled with less storage are more attractive at current cost levels, due to high component costs. However, higher solar multiples show a lower net cost using projected future costs for heliostats and thermal storage materials.

Carbon Transformations and Source - Sink Dynamics along a River, Marsh, Estuary, Ocean Continuum

NASA Astrophysics Data System (ADS)

Anderson, I. C.; Crosswell, J.; Czapla, K.; Van Dam, B.

2017-12-01

Estuaries, the transition zone between land and the coastal ocean, are highly dynamic systems in which carbon sourced from watersheds, marshes, atmosphere, and ocean may be transformed, sequestered, or exported. The net fate of carbon in estuaries, governed by the interactions of biotic and physical drivers varying on spatial and temporal scales, is currently uncertain because of limited observational data. In this study, conducted in a temperate, microtidal, and shallow North Carolina USA estuary, carbon exchanges via river, tributary, and fringing salt marsh, air-water fluxes, sediment C accumulation, and metabolism were monitored over two-years, with sharply different amounts of rainfall. Air-water CO2 fluxes and metabolic variables were simultaneously measured in channel and shoal by conducting high-resolution surveys at dawn, dusk and the following dawn. Marsh CO2 exchanges, sediment C inputs, and lateral exports of DIC and DOC were also measured. Carbon flows between estuary regions and export to the coastal ocean were calculated by quantifying residual transport of DIC and TOC down-estuary as flows were modified by sources, sinks and internal transformations. Variation in metabolic rates, CO2, TOC and DIC exchanges were large when determined for short time and limited spatial scales. However, when scaled to annual and whole estuarine scales, variation tended to decrease because of counteracting metabolic rates and fluxes between channel and shoal or between seasons. Although overall salt marshes accumulated OC, they were a negligible source of DIC and DOC to the estuary, and net inputs of C to the marsh were mainly derived from sediment OC. These results, as observed in other observational studies of estuaries, show that riverine input, light, temperature and metabolism are major controls on carbon cycling. Comparison of our results with other types of estuaries varying in depth, latitude, and nutrification demonstrates large discrepancies underscoring the limitations of current sampling designs, models and datasets in representing system-scale diversity; thus, a more practical approach may be to choose a small number of representative coastal systems, coordinate research efforts to quantify the relevant fluxes and constrain a range of environmental conditions that influence carbon cycling.

A global modeling study on carbonaceous aerosol microphysical characteristics and radiative forcing

NASA Astrophysics Data System (ADS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-02-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, cloud-indirect and semi-direct forcing effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative forcing. Our best estimate for net direct and indirect aerosol radiative forcing between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative forcing can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Assuming that sulfates, nitrates and secondary organics form a coating around a black carbon core, rather than forming a uniformly mixed particle, changes the overall net aerosol radiative forcing from negative to positive. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Black carbon absorption is amplified by sulfate and nitrate coatings, but even more strongly by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative forcing when sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to climate benefits.

Large net CO2 loss from a grass-dominated tropical savanna in south-central Brazil in response to seasonal and interannual drought

NASA Astrophysics Data System (ADS)

Zanella De Arruda, Paulo Henrique; Vourlitis, George Louis; Santanna, Franciele Bomfiglio; Pinto, Osvaldo Borges, Jr.; De Almeida Lobo, Francisco; De Souza Nogueira, José

2016-08-01

The savanna vegetation of Brazil (Cerrado) accounts for 20-25% of the land cover of Brazil and is the second largest ecosystem following Amazonian forest; however, Cerrado mass and energy exchange is still highly uncertain. We used eddy covariance to measure the net ecosystem CO2 exchange (NEE) of grass-dominated Cerrado (campo sujo) over 3 years. We hypothesized that soil water availability would be a key control over the seasonal and interannual variations in NEE. Multiple regression indicated that gross primary production (GPP) was positively correlated (Pearson's r = 0.69; p < 0.001) with soil water content, radiation, and the Moderate Resolution Imaging Spectroradiometer (MODIS)-derived enhanced vegetation index (EVI) but negatively correlated with the vapor pressure deficit (VPD), indicating that drier conditions increased water limitations on GPP. Similarly, ecosystem respiration (Reco) was positively correlated (Pearson's r = 0.78; p < 0.001) with the EVI, radiation, soil water content, and temperature but slightly negatively correlated with rainfall and the VPD. While the NEE responded rapidly to temporal variations in soil water availability, the grass-dominated Cerrado stand was a net source of CO2 to the atmosphere during the study period, which was drier compared to the long-term average rainfall. Cumulative NEE was approximately 842 gC m-2, varying from 357 gC m-2 in 2011 to 242 gC m-2 in 2012. Our results indicate that grass-dominated Cerrado may be an important regional CO2 source in response to the warming and drying that is expected to occur in the southern Amazon Basin under climate change.

Increasing Coverage and Decreasing Inequity in Insecticide-Treated Bed Net Use among Rural Kenyan Children

PubMed Central

Noor, Abdisalan M; Amin, Abdinasir A; Akhwale, Willis S; Snow, Robert W

2007-01-01

Background Inexpensive and efficacious interventions that avert childhood deaths in sub-Saharan Africa have failed to reach effective coverage, especially among the poorest rural sectors. One particular example is insecticide-treated bed nets (ITNs). In this study, we present repeat observations of ITN coverage among rural Kenyan homesteads exposed at different times to a range of delivery models, and assess changes in coverage across socioeconomic groups. Methods and Findings We undertook a study of annual changes in ITN coverage among a cohort of 3,700 children aged 0–4 y in four districts of Kenya (Bondo, Greater Kisii, Kwale, and Makueni) annually between 2004 and 2006. Cross-sectional surveys of ITN coverage were undertaken coincidentally with the incremental availability of commercial sector nets (2004), the introduction of heavily subsidized nets through clinics (2005), and the introduction of free mass distributed ITNs (2006). The changing prevalence of ITN coverage was examined with special reference to the degree of equity in each delivery approach. ITN coverage was only 7.1% in 2004 when the predominant source of nets was the commercial retail sector. By the end of 2005, following the expansion of heavily subsidized clinic distribution system, ITN coverage rose to 23.5%. In 2006 a large-scale mass distribution of ITNs was mounted providing nets free of charge to children, resulting in a dramatic increase in ITN coverage to 67.3%. With each subsequent survey socioeconomic inequity in net coverage sequentially decreased: 2004 (most poor [2.9%] versus least poor [15.6%]; concentration index 0.281); 2005 (most poor [17.5%] versus least poor [37.9%]; concentration index 0.131), and 2006 with near-perfect equality (most poor [66.3%] versus least poor [66.6%]; concentration index 0.000). The free mass distribution method achieved highest coverage among the poorest children, the highly subsidised clinic nets programme was marginally in favour of the least poor, and the commercial social marketing favoured the least poor. Conclusions Rapid scaling up of ITN coverage among Africa's poorest rural children can be achieved through mass distribution campaigns. These efforts must form an important adjunct to regular, routine access to ITNs through clinics, and each complimentary approach should aim to make this intervention free to clients to ensure equitable access among those least able to afford even the cost of a heavily subsidized net. PMID:17713981

Net Reaction Rate and Neutrino Cooling Rate for the Urca Process in Departure from Chemical Equilibrium in the Crust of Fast-accreting Neutron Stars

NASA Astrophysics Data System (ADS)

Wang, Wei-Hua; Huang, Xi; Zheng, Xiao-Ping

We discuss the effect of compression on Urca shells in the ocean and crust of accreting neutron stars, especially in superbursting sources. We find that Urca shells may be deviated from chemical equilibrium in neutron stars which accrete at several tenths of the local Eddington accretion rate. The deviation depends on the energy threshold of the parent and daughter nuclei, the transition strength, the temperature, and the local accretion rate. In a typical crust model of accreting neutron stars, the chemical departures range from a few tenths of kBT to tens of kBT for various Urca pairs. If the Urca shell can exist in crusts of accreting neutron stars, compression may enhance the net neutrino cooling rate by a factor of about 1-2 relative to the neutrino emissivity in chemical equilibrium. For some cases, such as Urca pairs with small energy thresholds and/or weak transition strength, the large chemical departure may result in net heating rather than cooling, although the released heat can be small. Strong Urca pairs in the deep crust are hard to be deviated even in neutron stars accreting at the local Eddington accretion rate.

Microbial production of organic acids in aquitard sediments and its role in aquifer geochemistry

USGS Publications Warehouse

McMahon, P.B.; Chapelle, F.H.

1991-01-01

MICROBIAL activity in aquifers plays an important part in the chemical evolution of ground water1-5. The most important terminal electron-accepting microbial processes in deeply buried anaerobic aquifers are iron reduction, sulphate reduction and methanogenesis5-8, each of which requires simple organic compounds or hydrogen (H2) as electron donors. Until now, the source of these compounds was unknown because the concentrations of dissolved organic carbon and sedimentary organic carbon in aquifers are extremely low9-11. Here we show that rates of microbial fermentation exceed rates of respiration in organic-rich aquitards (low-permeability sediments stratigraphically adjacent to higher-permeability aquifer sediments), resulting in a net accumulation of simple organic acids in pore waters. In aquifers, however, respiration outpaces fermentation, resulting in a net consumption of organic acids. The concentration gradient that develops in response to these two processes drives a net diffusive flux of organic acids from aquitards to aquifers. Diffusion calculations demonstrate that rates of organic acid transport are sufficient to account for observed rates of microbial respiration in aquifers. This overall process effectively links the large pool of sedimentary organic carbon in aquitards to microbial respiration in aquifers, and is a principal mechanism driving groundwater chemistry changes in aquifers.

A 3D Active Learning Application for NeMO-Net, the NASA Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

NASA Technical Reports Server (NTRS)

van den Bergh, Jarrett; Schutz, Joey; Li, Alan; Chirayath, Ved

2017-01-01

NeMO-Net, the NASA neural multi-modal observation and training network for global coral reef assessment, is an open-source deep convolutional neural network and interactive active learning training software aiming to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology as well as mapping of spatial distribution. We present an interactive video game prototype for tablet and mobile devices where users interactively label morphology classifications over mm-scale 3D coral reef imagery captured using fluid lensing to create a dataset that will be used to train NeMO-Nets convolutional neural network. The application currently allows for users to classify preselected regions of coral in the Pacific and will be expanded to include additional regions captured using our NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as lower-resolution airborne remote sensing data from the ongoing NASA CORAL campaign. Active learning applications present a novel methodology for efficiently training large-scale Neural Networks wherein variances in identification can be rapidly mitigated against control data. NeMO-Net periodically checks users input against pre-classified coral imagery to gauge their accuracy and utilize in-game mechanics to provide classification training. Users actively communicate with a server and are requested to classify areas of coral for which other users had conflicting classifications and contribute their input to a larger database for ranking. In partnering with Mission Blue and IUCN, NeMO-Net leverages an international consortium of subject matter experts to classify areas of confusion identified by NeMO-Net and generate additional labels crucial for identifying decision boundary locations in coral reef assessment.

Discovery of non-volcanic tremor and contribution to earth science by NIED Hi-net

NASA Astrophysics Data System (ADS)

Obara, K.

2015-12-01

Progress of seismic observation network brings breakthroughs in the earth science at each era. High sensitivity seismograph network (Hi-net) was constructed by National Research Institute for Earth Science and Disaster Prevention (NIED) as a national project in order to improve the detection capability of microearthquake after disastrous 1995 Kobe earthquake. Hi-net has been contributing to not only monitoring of seismicity but also producing many research results like as discoveries of non-volcanic tremor and other slow earthquakes. More important thing is that we have continued to make efforts to monitor all of data visually and effectively. The discovery of tremor in southwest Japan stimulated PGC researchers to search similar seismic signature in Cascadia because of a couple of common features in the tremor in Japan and slow slip event (SSE) they already discovered in Cascadia. At last, episodic tremor and slip (ETS) was discovered, then the SSE associated with tremor was also detected in Japan by using the tilting data measured by high-sensitivity accelerometer attached with the Hi-net. This coupling phenomena strengthened the connection between seismology and geodesy. Widely separated spectrum of tremor and SSE motivated us to search intervened phenomena, then we found very low frequency earthquake during ETS episode. These slow earthquakes obey a scaling law different from ordinary earthquake. This difference is very important to resolve the earthquake physics. Hi-net is quite useful for not only three-dimensional imaging of underground structure beneath the Japan Islands, but also resolving deep Earth interior by using teleseismic events or ambient noises and source rupture process of large earthquakes by using back-projection analysis as a remote array. Hi-net will continue to supply unexpected new discoveries. I expect that multiple installation of similar dense seismic array in the world will give us great opportunity to discover more important and explore a new regime in the earth science.

A 3D Active Learning Application for NeMO-Net, the NASA Neural Multi-Modal Observation and Training Network for Global Coral Reef Assessment

NASA Astrophysics Data System (ADS)

van den Bergh, J.; Schutz, J.; Chirayath, V.; Li, A.

2017-12-01

NeMO-Net, the NASA neural multi-modal observation and training network for global coral reef assessment, is an open-source deep convolutional neural network and interactive active learning training software aiming to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology as well as mapping of spatial distribution. We present an interactive video game prototype for tablet and mobile devices where users interactively label morphology classifications over mm-scale 3D coral reef imagery captured using fluid lensing to create a dataset that will be used to train NeMO-Net's convolutional neural network. The application currently allows for users to classify preselected regions of coral in the Pacific and will be expanded to include additional regions captured using our NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as lower-resolution airborne remote sensing data from the ongoing NASA CORAL campaign.Active learning applications present a novel methodology for efficiently training large-scale Neural Networks wherein variances in identification can be rapidly mitigated against control data. NeMO-Net periodically checks users' input against pre-classified coral imagery to gauge their accuracy and utilizes in-game mechanics to provide classification training. Users actively communicate with a server and are requested to classify areas of coral for which other users had conflicting classifications and contribute their input to a larger database for ranking. In partnering with Mission Blue and IUCN, NeMO-Net leverages an international consortium of subject matter experts to classify areas of confusion identified by NeMO-Net and generate additional labels crucial for identifying decision boundary locations in coral reef assessment.

Transport, sloughing and settling rates of estuarine macrophytes: Mechanisms and ecological implications

NASA Astrophysics Data System (ADS)

Flindt, M. R.; Pedersen, C. B.; Amos, C. L.; Levy, A.; Bergamasco, A.; Friend, P. L.

2007-05-01

The study of plant-bound nutrient transport has been largely neglected in estuaries. Lately however, it has been shown that nutrients bound to macroalgae and seagrasses can constitute a major part of the nutrient transport in shallow tidal estuaries. Organic detritus in estuaries comes from various sources. This paper looks into the source of detritus from sloughing, and the transport behaviour of plant detritus under unidirectional flows. In order to determine the extent of the sloughing of macrophytes, the threshold current velocities for the traction and resuspension of the most common submersed macrophytes in Venice Lagoon ( Ulva lactuca, Enteromorpha sp., Ceramium rubrum, Cladophora sp., and Chaetomorpha linum) were studied in a laboratory flume. It was found that all macrophytes subjected to flows of 1.5-3.0 cm s -1 move initially as bed load. The threshold for suspension of the macrophyte tissue was at current speeds >3 cm s -1. The exception was the filamentous macroalgae, C. linum, which moved as bed load at all current speeds. This implies that the advection of plant-bound nutrients in Venice Lagoon is widespread and takes place over virtually all stages of the tide. Initial experiments were carried out on unattached macroalgae. A second study focused on the sloughing of attached macroalgae by steady currents. The threshold current speeds at which sloughing commenced varied between different types of algae, and sloughing rate was related largely to current speed. The resuspension rates were uniform between the different macrophyte groups. Our results help explain why plant matter has been trapped in nets close to the bed of Venice Lagoon on ebbing tides. It shows that a major component of the bedload is organic in origin. The results verify that a large proportion of the net nutrient export from estuaries is bound in macrophyte tissue. These findings need to be included in future ecological models that describe the resuspension, sloughing and settling of macrophytes.

JEnsembl: a version-aware Java API to Ensembl data systems

PubMed Central

Paterson, Trevor; Law, Andy

2012-01-01

Motivation: The Ensembl Project provides release-specific Perl APIs for efficient high-level programmatic access to data stored in various Ensembl database schema. Although Perl scripts are perfectly suited for processing large volumes of text-based data, Perl is not ideal for developing large-scale software applications nor embedding in graphical interfaces. The provision of a novel Java API would facilitate type-safe, modular, object-orientated development of new Bioinformatics tools with which to access, analyse and visualize Ensembl data. Results: The JEnsembl API implementation provides basic data retrieval and manipulation functionality from the Core, Compara and Variation databases for all species in Ensembl and EnsemblGenomes and is a platform for the development of a richer API to Ensembl datasources. The JEnsembl architecture uses a text-based configuration module to provide evolving, versioned mappings from database schema to code objects. A single installation of the JEnsembl API can therefore simultaneously and transparently connect to current and previous database instances (such as those in the public archive) thus facilitating better analysis repeatability and allowing ‘through time’ comparative analyses to be performed. Availability: Project development, released code libraries, Maven repository and documentation are hosted at SourceForge (http://jensembl.sourceforge.net). Contact: jensembl-develop@lists.sf.net, andy.law@roslin.ed.ac.uk, trevor.paterson@roslin.ed.ac.uk PMID:22945789

Improved Net-Level Filling And Finishing Of Large Castings

NASA Technical Reports Server (NTRS)

Johnson, Erik P.; Brown, Richard F.

1995-01-01

Improved method of vacuum casting of large, generally cylindrical objects to net sizes and shapes reduces amount of direct manual labor by workers in proximity to cast material. Original application for which method devised is fabrication of solid rocket-motor segments containing solid propellant, wherein need to minimize exposure of workers to propellant material being cast. Improved method adaptable to other applications involving large castings of toxic, flammable, or otherwise hazardous materials.

Combining Site Occupancy, Breeding Population Sizes and Reproductive Success to Calculate Time-Averaged Reproductive Output of Different Habitat Types: An Application to Tricolored Blackbirds

PubMed Central

Holyoak, Marcel; Meese, Robert J.; Graves, Emily E.

2014-01-01

In metapopulations in which habitat patches vary in quality and occupancy it can be complicated to calculate the net time-averaged contribution to reproduction of particular populations. Surprisingly, few indices have been proposed for this purpose. We combined occupancy, abundance, frequency of occurrence, and reproductive success to determine the net value of different sites through time and applied this method to a bird of conservation concern. The Tricolored Blackbird (Agelaius tricolor) has experienced large population declines, is the most colonial songbird in North America, is largely confined to California, and breeds itinerantly in multiple habitat types. It has had chronically low reproductive success in recent years. Although young produced per nest have previously been compared across habitats, no study has simultaneously considered site occupancy and reproductive success. Combining occupancy, abundance, frequency of occurrence, reproductive success and nest failure rate we found that that large colonies in grain fields fail frequently because of nest destruction due to harvest prior to fledging. Consequently, net time-averaged reproductive output is low compared to colonies in non-native Himalayan blackberry or thistles, and native stinging nettles. Cattail marshes have intermediate reproductive output, but their reproductive output might be improved by active management. Harvest of grain-field colonies necessitates either promoting delay of harvest or creating alternative, more secure nesting habitats. Stinging nettle and marsh colonies offer the main potential sources for restoration or native habitat creation. From 2005–2011 breeding site occupancy declined 3x faster than new breeding colonies were formed, indicating a rapid decline in occupancy. Total abundance showed a similar decline. Causes of variation in the value for reproduction of nesting substrates and factors behind continuing population declines merit urgent investigation. The method we employ should be useful in other metapopulation studies for calculating time-averaged reproductive output for different sites. PMID:24817307

Renewal of Collaborative Research: Economically Viable Forest Harvesting Practices That Increase Carbon Sequestration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davidson, E.A.; Dail, D.B., Hollinger, D.; Scott, N.

Forests provide wildlife habitat, water and air purification, climate moderation, and timber and nontimber products. Concern about climate change has put forests in the limelight as sinks of atmospheric carbon. The C stored in the global vegetation, mostly in forests, is nearly equivalent to the amount present in atmospheric CO{sub 2}. Both voluntary and government-mandated carbon trading markets are being developed and debated, some of which include C sequestration resulting from forest management as a possible tradeable commodity. However, uncertainties regarding sources of variation in sequestration rates, validation, and leakage remain significant challenges for devising strategies to include forest managementmore » in C markets. Hence, the need for scientifically-based information on C sequestration by forest management has never been greater. The consequences of forest management on the US carbon budget are large, because about two-thirds of the {approx}300 million hectare US forest resource is classified as 'commercial forest.' In most C accounting budgets, forest harvesting is usually considered to cause a net release of C from the terrestrial biosphere to the atmosphere. However, forest management practices could be designed to meet the multiple goals of providing wood and paper products, creating economic returns from natural resources, while sequestering C from the atmosphere. The shelterwood harvest strategy, which removes about 30% of the basal area of the overstory trees in each of three successive harvests spread out over thirty years as part of a stand rotation of 60-100 years, may improve net C sequestration compared to clear-cutting because: (1) the average C stored on the land surface over a rotation increases, (2) harvesting only overstory trees means that a larger fraction of the harvested logs can be used for long-lived sawtimber products, compared to more pulp resulting from clearcutting, (3) the shelterwood cut encourages growth of subcanopy trees by opening up the forest canopy to increasing light penetration. Decomposition of onsite harvest slash and of wastes created during timber processing releases CO{sub 2} to the atmosphere, thus offsetting some of the C sequestered in vegetation. Decomposition of soil C and dead roots may also be temporarily stimulated by increased light penetration and warming of the forest floor. Quantification of these processes and their net effect is needed. We began studying C sequestration in a planned shelterwood harvest at the Howland Forest in central Maine in 2000. The harvest took place in 2002 by the International Paper Corporation, who assisted us to track the fates of harvest products (Scott et al., 2004, Environmental Management 33: S9-S22). Here we present the results of intensive on-site studies of the decay of harvest slash, soil respiration, growth of the remaining trees, and net ecosystem exchange (NEE) of CO{sub 2} during the first six years following the harvest. These results are combined with calculations of C in persisting off-site harvest products to estimate the net C consequences to date of this commercial shelterwood harvest operation. Tower-based eddy covariance is an ideal method for this study, as it integrates all C fluxes in and out of the forest over a large 'footprint' area and can reveal how the net C flux, as well as gross primary productivity and respiration, change following harvest. Because the size of this experiment precludes large-scale replication, we are use a paired-airshed approach, similar to classic large-scale paired watershed experiments. Measurements of biomass and C fluxes in control and treatment stands were compared during a pre-treatment calibration period, and then divergence from pre-treatment relationships between the two sites measured after the harvest treatment. Forests store carbon (C) as they accumulate biomass. Many forests are also commercial sources of timber and wood fiber. In most C accounting budgets, forest harvesting is usually considered to cause a net release of C from the terrestrial biosphere to the atmosphere. However, it might also be possible for commercial use of forests to contribute to terrestrial sequestration of C. The objective of the our research project is to determine whether shelterwood cutting regimes now being adopted in the commercial forests of Maine and other areas of the country can achieve these multiple goals.« less

Can net income from non-patient-care activities continue to save hospitals?

PubMed

Schuhmann, Thomas M

2010-05-01

A recent study found that U.S. hospitals are losing billions of dollars per year caring for patients. Hospitals have been able to offset patient care losses with substantial net income from sources not directly connected to patient care. However, this net income declined sharply with the economic downturn in 2008 and 2009, resulting in a decline in overall hospital profitability and putting a cloud of uncertainty over future hospital profitability.

Consuming fire ants reduces northern bobwhite survival and weight gain

USGS Publications Warehouse

Myers, P.E.; Allen, Craig R.; Birge, Hannah E.

2014-01-01

Northern bobwhite quail, Colinus virginianus (L.) (Galliformes: Odontophoridae), population declines are well documented, but pinpointing the reasons for these decreases has proven elusive. Bobwhite population declines are attributed primarily to loss of habitat and land use changes. This, however, does not entirely explain population declines in areas intensively managed for bobwhites. Although previous research demonstrates the negative impact of red imported fire ant (Solenopsis invicta Buren) (Hymenoptera: Formicidae) on northern bobwhites, the mechanisms underlying this effect are largely unknown. To meet the protein demands of early growth and development, bobwhite chicks predominantly consume small insects, of which ants are a substantial proportion. Fire ants alter ant community dynamics by often reducing native ant diversity and abundance while concurrently increasing the abundance of individuals. Fire ants have negative effects on chicks, but they are also a large potential protein source, making it difficult to disentangle their net effect on bobwhite chicks. To help investigate these effects, we conducted a laboratory experiment to understand (1) whether or not bobwhites consume fire ants, and (2) how the benefits of this consumption compare to the deleterious impacts of bobwhite chick exposure to fire ants. Sixty bobwhite chicks were separated into two groups of 30; one group was provided with starter feed only and the second group was provided with feed and fire ants. Bobwhite chicks were observed feeding on fire ants. Chicks that fed on fire ants had reduced survival and weight gain. Our results show that, while fire ants increase potential food sources for northern bobwhite, their net effect on bobwhite chicks is deleterious. This information will help inform land managers and commercial bobwhite rearing operations.

The near extinction of lake trout in Lake Michigan

USGS Publications Warehouse

Eschmeyer, Paul H.

1957-01-01

Comparisons in 1949 and 1950 of numbers of legal-sized lake trout caught in large-mesh nets with numbers of small fish taken in chub nets showed that both large and small lake trout declined over the same period, and that by these years the decline may have been greater among small than among legal-sized fish.

Evaluation of three gears for sampling spawning populations of rainbow trout in a large Alaskan river

USGS Publications Warehouse

Schwanke, C.J.; Hubert, W.A.

2004-01-01

Alternatives to electrofishing are needed for sampling sexually mature rainbow trout Oncorhynchus mykiss during the spawning season in large Alaskan rivers. We compared hook and line, beach seining, and actively fished gill nets as sampling tools. Beach seining and active gill netting yielded similar catch rates, length frequencies, and sex ratios of sexually mature fish. Hook-and-line sampling was less effective, with a lower catch rate and selectivity for immature fish and sexually mature females. We conclude that both beach seining and active gill netting can serve as alternatives to electrofishing for sampling sexually mature rainbow trout stocks during the spawning season in large rivers with stable spring flows and spawning areas with few snags.

An Open-source Toolbox for Analysing and Processing PhysioNet Databases in MATLAB and Octave.

PubMed

Silva, Ikaro; Moody, George B

The WaveForm DataBase (WFDB) Toolbox for MATLAB/Octave enables integrated access to PhysioNet's software and databases. Using the WFDB Toolbox for MATLAB/Octave, users have access to over 50 physiological databases in PhysioNet. The toolbox provides access over 4 TB of biomedical signals including ECG, EEG, EMG, and PLETH. Additionally, most signals are accompanied by metadata such as medical annotations of clinical events: arrhythmias, sleep stages, seizures, hypotensive episodes, etc. Users of this toolbox should easily be able to reproduce, validate, and compare results published based on PhysioNet's software and databases.

Source process of the 2016 Kumamoto earthquake (Mj7.3) inferred from kinematic inversion of strong-motion records

NASA Astrophysics Data System (ADS)

Yoshida, Kunikazu; Miyakoshi, Ken; Somei, Kazuhiro; Irikura, Kojiro

2017-05-01

In this study, we estimated source process of the 2016 Kumamoto earthquake from strong-motion data by using the multiple-time window linear kinematic waveform inversion method to discuss generation of strong motions and to explain crustal deformation pattern with a seismic source inversion model. A four-segment fault model was assumed based on the aftershock distribution, active fault traces, and interferometric synthetic aperture radar data. Three western segments were set to be northwest-dipping planes, and the most eastern segment under the Aso caldera was examined to be a southeast-dipping plane. The velocity structure models used in this study were estimated by using waveform modeling of moderate earthquakes that occurred in the source region. We applied a two-step approach of the inversions of 20 strong-motion datasets observed by K-NET and KiK-net by using band-pass-filtered strong-motion data at 0.05-0.5 Hz and then at 0.05-1.0 Hz. The rupture area of the fault plane was determined by applying the criterion of Somerville et al. (Seismol Res Lett 70:59-80, 1999) to the inverted slip distribution. From the first-step inversion, the fault length was trimmed from 52 to 44 km, whereas the fault width was kept at 18 km. The trimmed rupture area was not changed in the second-step inversion. The source model obtained from the two-step approach indicated 4.7 × 1019 Nm of the total moment release and 1.8 m average slip of the entire fault with a rupture area of 792 km2. Large slip areas were estimated in the seismogenic zone and in the shallow part corresponding to the surface rupture that occurred during the Mj7.3 mainshock. The areas of the high peak moment rate correlated roughly with those of large slip; however, the moment rate functions near the Earth surface have low peak, bell shape, and long duration. These subfaults with long-duration moment release are expected to cause weak short-period ground motions. We confirmed that the southeast dipping of the most eastern segment is more plausible rather than northwest-dipping from the observed subsidence around the central cones of the Aso volcano.[Figure not available: see fulltext.

The effects of ecological restoration on CO2 fluxes from a climatically marginal upland blanket bog

NASA Astrophysics Data System (ADS)

Dixon, Simon; Qassim, Suzane; Rowson, James; Worrall, Fred; Evans, Martin

2013-04-01

A legacy of gully incision, deposition of industrially-derived aerial pollutants, inappropriate management and wildfire has left large expanses of the topographic Bleaklow Plateau (Peak District National Park, England, UK) bare of vegetation and susceptible to massive erosion of the peat soils. The consequence of such degradation has been to decrease the capacity of the peatland on the plateau to provide important ecosystem services including; loss of net C sink function, discolouration of surface waters, mobilisation to surface waters of stored heavy metals and infilling of upland reservoirs with peat-derived sediment. In response to on-going and worsening degradation a programme of ecological restoration has been undertaken. Restoration methods include: seeding with a lawn grass mix; liming; fertilisation; slope stabilisation; and gully blocking. This talk will present data from a five-year, observational-study of CO2 fluxes from eight sites, with four sites sampling different restoration treatments and four sampling bare and least disturbed areas. The results of the analysis reveal that sites with revegetation alongside slope stabilisation were most productive and were the largest net (daylight hours) sinks of CO2. Unrestored, bare sites, while having relatively low gross fluxes of CO2 were the largest net sources of CO2. Revegetation without slope stabilisation took longer (~18 months) to show an impact on CO2 flux in comparison to the sites with slope stabilisation. Binary logistic regression indicated that a ten centimetre increase in water table depth decreases the odds of observing a net CO2 sink, on a given site, by up to 30%. Sites with slope stabilisation were between 5-8x more likely to be net CO2 sinks than the bare sites. Sites without slope stabilisation were only 2-2.3x more likely to be net CO2 sinks compared to the bare sites. The most important conclusion of this research is that revegetation appears to be effective at increasing the likelihood of net CO2 behaviour on degraded, climatically marginal blanket peat, with revegetation alongside slope stabilisation having the greatest impact.

"Twin copper source" growth of metal-organic framework membrane: Cu(3)(BTC)(2) with high permeability and selectivity for recycling H(2).

PubMed

Guo, Hailing; Zhu, Guangshan; Hewitt, Ian J; Qiu, Shilun

2009-02-11

In this communication, the copper net supported Cu(3)(BTC)(2) membranes have been successfully synthesized by means of a "twin copper source" technique. Separation studies on gaseous mixtures (H(2)/CO(2), H(2)/CH(4), and H(2)/N(2)) using the membrane revealed that the membrane possesses high permeability and selectivity for H(2) over CO(2), N(2), and CH(4). Compared with the conventional zeolite membranes, the copper net supported Cu(3)(BTC)(2) membrane exhibited high permeation flux in gas separation. Such highly efficient copper net supported Cu(3)(BTC)(2) membranes could be used to separate, recycle, and reuse H(2) exhausted from steam reforming natural gas.

Carbon dioxide flux and net primary production of a boreal treed bog: responses to warming and water table manipulations

NASA Astrophysics Data System (ADS)

Munir, T. M.; Perkins, M.; Kaing, E.; Strack, M.

2014-09-01

Mid-latitude treed bogs are significant carbon (C) stocks and are highly sensitive to global climate change. In a dry continental treed bog, we compared three sites; control, recent (1-3 years; experimental) and older drained (10-13 years; drained) with water levels at 38, 74 and 120 cm below the surface, respectively. At each site we measured carbon dioxide (CO2) fluxes and tree root respiration (Rr) (across hummock-hollow microtopography of the forest floor) and net primary production (NPP) of trees during the growing seasons (May to October) of 2011-2013. The carbon (C) balance was calculated by adding net CO2 exchange of the forest floor (NEff-Rr) to the NPP of the trees. From cooler and wetter 2011 to driest and warmest 2013, The control site was a~C sink of 92, 70 and 76 g m-2, experimental site was a C source of 14, 57 and 135 g m-2, and drained site was a progressively smaller source of 26, 23 and 13 g m-2, respectively. Although all microforms at the experimental site had large net CO2 emissions, the longer-term drainage and deeper water level at the drained site resulted in the replacement of mosses with vascular plants (shrubs) at the hummocks and lichens at the hollows leading to the highest CO2 uptake at drained hummocks and significant losses at hollows. The tree NPP was highest at the drained site. We also quantified the impact of climatic warming at all water table treatments by equipping additional plots with open-top chambers (OTCs) that caused a passive warming on average of ∼1 °C and differential air warming of ∼6 °C (at mid-day full sun) across the study years. Warming significantly enhanced the shrub growth and CO2 sink function of the drained hummocks (exceeding the cumulative respiration losses at hollows induced by the lowered water level × warming). There was an interaction of water level with warming across hummocks that resulted in largest net CO2 uptake at warmed drained hummocks. Thus in 2013, the warming treatment enhanced the sink function of control by 13 g m-2, reduced the source function of experimental by 10 g m-2, and significantly enhanced the sink function of the drained site by 73 g m-2. Therefore, drying and warming in continental bogs is expected to initially accelerate C losses via respiration but persistent drought and warming is expected to restore the peatland's original C sink function as a result of transitional shift of vegetation between the microforms and increased NPP of trees over time.

Sensitivity of the boreal forest-mire ecotone CO2, CH4, and N2O global warming potential to rainy and dry weather

NASA Astrophysics Data System (ADS)

Ťupek, Boris; Minkkinen, Kari; Vesala, Timo; Nikinmaa, Eero

2015-04-01

In a mosaic of well drained forests and poorly drained mires of boreal landscape the weather events such as drought and rainy control greenhouse gas dynamics and ecosystem global warming potential (GWP). In forest-mire ecotone especially in ecosystems where CO2 sink is nearly balanced with CO2 source, it's fairly unknown whether the net warming effect of emissions of gases with strong radiative forcing (CH4 and N2O) could offset the net cooling effect of CO2 sequestration. We compared the net ecosystem CO2 exchange (NEE) estimated from the carbon sequestrations of forest stands and forest floor CO2 fluxes against CH4 and N2O fluxes of nine forest/mire site types along the soil moisture gradient in Finland. The ground water of nine sites changed between 10 m in upland forests and 0.1 m in mires, and weather during three years ranged between exceptionally wet and dry for the local climate. The NEE of upland forests was typically a sink of CO2, regardless the weather. Though, xeric pine forest was estimated to be a source of CO2 during wet and intermediate year and became a weak sink only in dry year. The NEE of forest-mire transitions ranged between a sink in dry year, while increased stand carbon sequestration could offset the reduced forest floor CO2 emission, and a source in wet year. The NEE of two sparsely forested mires strongly differed. The lawn type mire was balanced around zero and the hummock type mire was relatively strong NEE sink, regardless the weather. Generally, nearly zero N2O emission could not offset the cooling effect of net CH4 sink and net CO2 sink of upland forest and forest-mire transitions. However in sparsely forested mires, with N2O emission also nearly zero, the CH4 emission during wet and intermediate year played important role in turning the net cooling effect of NEE into a net warming. When evaluating GWP of boreal landscapes, undisturbed forest-mire transitions should be regarded as net cooling ecosystems instead of hotspots of net warming.

Local precision nets for monitoring movements of faults and large engineering structures

NASA Technical Reports Server (NTRS)

Henneberg, H. G.

1978-01-01

Along Bocono Fault were installed local high precision geodetic nets to observe the possible horizontal crustal deformations and movements. In the fault area there are few big structures which are also included in the mentioned investigation. In the near future, measurements shall be extended to other sites of Bocono Fault and also to the El Pilar Fault. In the same way and by similar methods high precision geodetic nets are applied in Venezuela to observe the behavior of big structures, as bridges and large dams and of earth surface deformations due to industrial activities.

Estimating regional-scale methane flux and budgets using CARVE aircraft measurements over Alaska

NASA Astrophysics Data System (ADS)

Hartery, Sean; Commane, Róisín; Lindaas, Jakob; Sweeney, Colm; Henderson, John; Mountain, Marikate; Steiner, Nicholas; McDonald, Kyle; Dinardo, Steven J.; Miller, Charles E.; Wofsy, Steven C.; Chang, Rachel Y.-W.

2018-01-01

Methane (CH4) is the second most important greenhouse gas but its emissions from northern regions are still poorly constrained. In this study, we analyze a subset of in situ CH4 aircraft observations made over Alaska during the growing seasons of 2012-2014 as part of the Carbon in Arctic Reservoirs Vulnerability Experiment (CARVE). Net surface CH4 fluxes are estimated using a Lagrangian particle dispersion model which quantitatively links surface emissions from Alaska and the western Yukon with observations of enhanced CH4 in the mixed layer. We estimate that between May and September, net CH4 emissions from the region of interest were 2.2 ± 0.5 Tg, 1.9 ± 0.4 Tg, and 2.3 ± 0.6 Tg of CH4 for 2012, 2013, and 2014, respectively. If emissions are only attributed to two biogenic eco-regions within our domain, then tundra regions were the predominant source, accounting for over half of the overall budget despite only representing 18 % of the total surface area. Boreal regions, which cover a large part of the study region, accounted for the remainder of the emissions. Simple multiple linear regression analysis revealed that, overall, CH4 fluxes were largely driven by soil temperature and elevation. In regions specifically dominated by wetlands, soil temperature and moisture at 10 cm depth were important explanatory variables while in regions that were not wetlands, soil temperature and moisture at 40 cm depth were more important, suggesting deeper methanogenesis in drier soils. Although similar environmental drivers have been found in the past to control CH4 emissions at local scales, this study shows that they can be used to generate a statistical model to estimate the regional-scale net CH4 budget.

Negative emissions: Part 1—research landscape and synthesis

NASA Astrophysics Data System (ADS)

Minx, Jan C.; Lamb, William F.; Callaghan, Max W.; Fuss, Sabine; Hilaire, Jérôme; Creutzig, Felix; Amann, Thorben; Beringer, Tim; de Oliveira Garcia, Wagner; Hartmann, Jens; Khanna, Tarun; Lenzi, Dominic; Luderer, Gunnar; Nemet, Gregory F.; Rogelj, Joeri; Smith, Pete; Vicente, Jose Luis Vicente; Wilcox, Jennifer; del Mar Zamora Dominguez, Maria

2018-06-01

With the Paris Agreement’s ambition of limiting climate change to well below 2 °C, negative emission technologies (NETs) have moved into the limelight of discussions in climate science and policy. Despite several assessments, the current knowledge on NETs is still diffuse and incomplete, but also growing fast. Here, we synthesize a comprehensive body of NETs literature, using scientometric tools and performing an in-depth assessment of the quantitative and qualitative evidence therein. We clarify the role of NETs in climate change mitigation scenarios, their ethical implications, as well as the challenges involved in bringing the various NETs to the market and scaling them up in time. There are six major findings arising from our assessment: first, keeping warming below 1.5 °C requires the large-scale deployment of NETs, but this dependency can still be kept to a minimum for the 2 °C warming limit. Second, accounting for economic and biophysical limits, we identify relevant potentials for all NETs except ocean fertilization. Third, any single NET is unlikely to sustainably achieve the large NETs deployment observed in many 1.5 °C and 2 °C mitigation scenarios. Yet, portfolios of multiple NETs, each deployed at modest scales, could be invaluable for reaching the climate goals. Fourth, a substantial gap exists between the upscaling and rapid diffusion of NETs implied in scenarios and progress in actual innovation and deployment. If NETs are required at the scales currently discussed, the resulting urgency of implementation is currently neither reflected in science nor policy. Fifth, NETs face severe barriers to implementation and are only weakly incentivized so far. Finally, we identify distinct ethical discourses relevant for NETs, but highlight the need to root them firmly in the available evidence in order to render such discussions relevant in practice.

NetCDF-CF: Supporting Earth System Science with Data Access, Analysis, and Visualization

NASA Astrophysics Data System (ADS)

Davis, E.; Zender, C. S.; Arctur, D. K.; O'Brien, K.; Jelenak, A.; Santek, D.; Dixon, M. J.; Whiteaker, T. L.; Yang, K.

2017-12-01

NetCDF-CF is a community-developed convention for storing and describing earth system science data in the netCDF binary data format. It is an OGC recognized standard with numerous existing FOSS (Free and Open Source Software) and commercial software tools can explore, analyze, and visualize data that is stored and described as netCDF-CF data. To better support a larger segment of the earth system science community, a number of efforts are underway to extend the netCDF-CF convention with the goal of increasing the types of data that can be represented as netCDF-CF data. This presentation will provide an overview and update of work to extend the existing netCDF-CF convention. It will detail the types of earth system science data currently supported by netCDF-CF and the types of data targeted for support by current netCDF-CF convention development efforts. It will also describe some of the tools that support the use of netCDF-CF compliant datasets, the types of data they support, and efforts to extend them to handle the new data types that netCDF-CF will support.

Water level, vegetation composition, and plant productivity explain greenhouse gas fluxes in temperate cutover fens after inundation

NASA Astrophysics Data System (ADS)

Minke, Merten; Augustin, Jürgen; Burlo, Andrei; Yarmashuk, Tatsiana; Chuvashova, Hanna; Thiele, Annett; Freibauer, Annette; Tikhonov, Vitalij; Hoffmann, Mathias

2016-07-01

Peat extraction leaves a land surface with a strong relief of deep cutover areas and higher ridges. Rewetting inundates the deep parts, while less deeply extracted zones remain at or above the water level. In temperate fens the flooded areas are colonized by helophytes such as Eriophorum angustifolium, Carex spp., Typha latifolia or Phragmites australis dependent on water depth. Reeds of Typha and Phragmites are reported as large sources of methane, but data on net CO2 uptake are contradictory for Typha and rare for Phragmites. Here, we analyze the effect of vegetation, water level and nutrient conditions on greenhouse gas (GHG) emissions for representative vegetation types along water level gradients at two rewetted cutover fens (mesotrophic and eutrophic) in Belarus. Greenhouse gas emissions were measured campaign-wise with manual chambers every 2 to 4 weeks for 2 years and interpolated by modelling. All sites had negligible nitrous oxide exchange rates. Most sites were carbon sinks and small GHG sources. Methane emissions generally increased with net ecosystem CO2 uptake. Mesotrophic small sedge reeds with water table around the land surface were small GHG sources in the range of 2.3 to 4.2 t CO2 eq. ha-1 yr-1. Eutrophic tall sedge - Typha latifolia reeds on newly formed floating mats were substantial net GHG emitters in the range of 25.1 to 39.1 t CO2 eq. ha-1 yr. They represent transient vegetation stages. Phragmites reeds ranged between -1.7 to 4.2 t CO2 eq. ha-1 yr-1 with an overall mean GHG emission of 1.3 t CO2 eq. ha-1 yr-1. The annual CO2 balance was best explained by vegetation biomass, which includes the role of vegetation composition and species. Methane emissions were obviously driven by biological activity of vegetation and soil organisms. Shallow flooding of cutover temperate fens is a suitable measure to arrive at low GHG emissions. Phragmites australis establishment should be promoted in deeper flooded areas and will lead to moderate, but variable GHG emissions or even occasional sinks. The risk of large GHG emissions is higher for eutrophic than mesotrophic peatlands. Nevertheless, flooding of eutrophic temperate fens still represents a safe GHG mitigation option because even the hotspot of our study, the floating tall sedge - Typha latifolia reeds, did not exceed the typical range of GHG emissions from drained fen grasslands and the spatially dominant Phragmites australis reed emitted by far less GHG than drained fens.

Bed Net Durability Assessments: Exploring a Composite Measure of Net Damage

PubMed Central

Vanden Eng, Jodi L.; Chan, Adeline; Abílio, Ana Paula; Wolkon, Adam; Ponce de Leon, Gabriel; Gimnig, John; Morgan, Juliette

2015-01-01

Background The durability of Long Lasting Insecticidal Nets (LLINs) in field conditions is of great importance for malaria prevention and control efforts; however, the physical integrity of the net fabric is not well understood making it challenging to determine overall effectiveness of nets as they age. The 2011 World Health Organization Pesticide Evaluation Scheme (WHOPES) guidelines provide a simple, standardized method using a proportional hole index (PHI) for assessing net damage with the intent to provide national malaria control programs with guidelines to assess the useful life of LLINS and estimate the rate of replacement. Methods We evaluated the utility of the PHI measure using 409 LLINs collected over three years in Nampula Province, Mozambique following a mass distribution campaign in 2008. For each LLIN the diameter and distance from the bottom of the net were recorded for every hole. Holes were classified into four size categories and a PHI was calculated following WHOPES guidelines. We investigate how the size, shape, and location of holes influence the PHI. The areas of the WHOPES defined categories were compared to circular and elliptical areas based on approximate shape and actual measured axes of each hole and the PHI was compared to cumulative damaged surface area of the LLIN. Results The damaged area of small, medium, large, and extra-large holes was overestimated using the WHOPES categories compared to elliptical areas using the actual measured axes. Similar results were found when comparing to circular areas except for extra-large holes which were underestimated. (Wilcoxon signed rank test of differences p< 0.0001 for all sizes). Approximating holes as circular overestimated hole surface area by 1.5 to 2 times or more. There was a significant difference in the mean number of holes < 0.5 cm by brand and there were more holes of all sizes on the bottom of nets than the top. For a range of hypothetical PHI thresholds used to designate a “failed LLIN”, roughly 75 to 80% of failed LLINs were detected by considering large and extra-large holes alone, but sensitivity varied by brand. Conclusions Future studies may refine the PHI to better approximate overall damaged surface area. Furthermore, research is needed to identify whether or not appropriate PHI thresholds can be used to deem a net no longer protective. Once a cutoff is selected, simpler methods of determining the effective lifespan of LLINs can help guide replacement strategies for malaria control programs. PMID:26047494

Bed Net Durability Assessments: Exploring a Composite Measure of Net Damage.

PubMed

Vanden Eng, Jodi L; Chan, Adeline; Abílio, Ana Paula; Wolkon, Adam; Ponce de Leon, Gabriel; Gimnig, John; Morgan, Juliette

2015-01-01

The durability of Long Lasting Insecticidal Nets (LLINs) in field conditions is of great importance for malaria prevention and control efforts; however, the physical integrity of the net fabric is not well understood making it challenging to determine overall effectiveness of nets as they age. The 2011 World Health Organization Pesticide Evaluation Scheme (WHOPES) guidelines provide a simple, standardized method using a proportional hole index (PHI) for assessing net damage with the intent to provide national malaria control programs with guidelines to assess the useful life of LLINS and estimate the rate of replacement. We evaluated the utility of the PHI measure using 409 LLINs collected over three years in Nampula Province, Mozambique following a mass distribution campaign in 2008. For each LLIN the diameter and distance from the bottom of the net were recorded for every hole. Holes were classified into four size categories and a PHI was calculated following WHOPES guidelines. We investigate how the size, shape, and location of holes influence the PHI. The areas of the WHOPES defined categories were compared to circular and elliptical areas based on approximate shape and actual measured axes of each hole and the PHI was compared to cumulative damaged surface area of the LLIN. The damaged area of small, medium, large, and extra-large holes was overestimated using the WHOPES categories compared to elliptical areas using the actual measured axes. Similar results were found when comparing to circular areas except for extra-large holes which were underestimated. (Wilcoxon signed rank test of differences p< 0.0001 for all sizes). Approximating holes as circular overestimated hole surface area by 1.5 to 2 times or more. There was a significant difference in the mean number of holes < 0.5 cm by brand and there were more holes of all sizes on the bottom of nets than the top. For a range of hypothetical PHI thresholds used to designate a "failed LLIN", roughly 75 to 80% of failed LLINs were detected by considering large and extra-large holes alone, but sensitivity varied by brand. Future studies may refine the PHI to better approximate overall damaged surface area. Furthermore, research is needed to identify whether or not appropriate PHI thresholds can be used to deem a net no longer protective. Once a cutoff is selected, simpler methods of determining the effective lifespan of LLINs can help guide replacement strategies for malaria control programs.

Gamma-sky.net: Portal to the gamma-ray sky

NASA Astrophysics Data System (ADS)

Voruganti, Arjun; Deil, Christoph; Donath, Axel; King, Johannes

2017-01-01

http://gamma-sky.net is a novel interactive website designed for exploring the gamma-ray sky. The Map View portion of the site is powered by the Aladin Lite sky atlas, providing a scalable survey image tesselated onto a three-dimensional sphere. The map allows for interactive pan and zoom navigation as well as search queries by sky position or object name. The default image overlay shows the gamma-ray sky observed by the Fermi-LAT gamma-ray space telescope. Other survey images (e.g. Planck microwave images in low/high frequency bands, ROSAT X-ray image) are available for comparison with the gamma-ray data. Sources from major gamma-ray source catalogs of interest (Fermi-LAT 2FHL, 3FGL and a TeV source catalog) are overlaid over the sky map as markers. Clicking on a given source shows basic information in a popup, and detailed pages for every source are available via the Catalog View component of the website, including information such as source classification, spectrum and light-curve plots, and literature references. We intend for gamma-sky.net to be applicable for both professional astronomers as well as the general public. The website started in early June 2016 and is being developed as an open-source, open data project on GitHub (https://github.com/gammapy/gamma-sky). We plan to extend it to display more gamma-ray and multi-wavelength data. Feedback and contributions are very welcome!

Net current control device. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fugate, D.; Cooper, J.H.

1998-11-01

Net currents generally result in elevated magnetic fields because the alternate paths are distant from the circuit conductors. Investigations have shown that one of the primary sources of power frequency magnetic fields in residential buildings is currents that return to their source via paths other than the neutral conductors. As part of EPRI`s Magnetic Field Shielding Project, ferromagnetic devices, called net current control (NCC) devices, were developed and tested for use in reducing net currents on electric power cables and the resulting magnetic fields. Applied to a residential service drop, an NCC device reduces net current by forcing current offmore » local non-utility ground paths, and back onto the neutral conductor. Circuit models and basic design equations for the NCC concept were developed, and proof-of-principles tests were carried out on an actual residence with cooperation from the local utility. After proving the basic concepts, three prototype NCC devices were built and tested on a simulated neighborhood power system. Additional prototypes were built for testing by interested EPRI utility members. Results have shown that the NCC prototypes installed on residential service drops reduce net currents to milliampere levels with compromising the safety of the ground system. Although the focus was on application to residential service cables, the NCC concept is applicable to single-phase and three-phase distribution systems as well.« less

CGBayesNets: Conditional Gaussian Bayesian Network Learning and Inference with Mixed Discrete and Continuous Data

PubMed Central

Weiss, Scott T.

2014-01-01

Bayesian Networks (BN) have been a popular predictive modeling formalism in bioinformatics, but their application in modern genomics has been slowed by an inability to cleanly handle domains with mixed discrete and continuous variables. Existing free BN software packages either discretize continuous variables, which can lead to information loss, or do not include inference routines, which makes prediction with the BN impossible. We present CGBayesNets, a BN package focused around prediction of a clinical phenotype from mixed discrete and continuous variables, which fills these gaps. CGBayesNets implements Bayesian likelihood and inference algorithms for the conditional Gaussian Bayesian network (CGBNs) formalism, one appropriate for predicting an outcome of interest from, e.g., multimodal genomic data. We provide four different network learning algorithms, each making a different tradeoff between computational cost and network likelihood. CGBayesNets provides a full suite of functions for model exploration and verification, including cross validation, bootstrapping, and AUC manipulation. We highlight several results obtained previously with CGBayesNets, including predictive models of wood properties from tree genomics, leukemia subtype classification from mixed genomic data, and robust prediction of intensive care unit mortality outcomes from metabolomic profiles. We also provide detailed example analysis on public metabolomic and gene expression datasets. CGBayesNets is implemented in MATLAB and available as MATLAB source code, under an Open Source license and anonymous download at http://www.cgbayesnets.com. PMID:24922310

CGBayesNets: conditional Gaussian Bayesian network learning and inference with mixed discrete and continuous data.

PubMed

McGeachie, Michael J; Chang, Hsun-Hsien; Weiss, Scott T

2014-06-01

Bayesian Networks (BN) have been a popular predictive modeling formalism in bioinformatics, but their application in modern genomics has been slowed by an inability to cleanly handle domains with mixed discrete and continuous variables. Existing free BN software packages either discretize continuous variables, which can lead to information loss, or do not include inference routines, which makes prediction with the BN impossible. We present CGBayesNets, a BN package focused around prediction of a clinical phenotype from mixed discrete and continuous variables, which fills these gaps. CGBayesNets implements Bayesian likelihood and inference algorithms for the conditional Gaussian Bayesian network (CGBNs) formalism, one appropriate for predicting an outcome of interest from, e.g., multimodal genomic data. We provide four different network learning algorithms, each making a different tradeoff between computational cost and network likelihood. CGBayesNets provides a full suite of functions for model exploration and verification, including cross validation, bootstrapping, and AUC manipulation. We highlight several results obtained previously with CGBayesNets, including predictive models of wood properties from tree genomics, leukemia subtype classification from mixed genomic data, and robust prediction of intensive care unit mortality outcomes from metabolomic profiles. We also provide detailed example analysis on public metabolomic and gene expression datasets. CGBayesNets is implemented in MATLAB and available as MATLAB source code, under an Open Source license and anonymous download at http://www.cgbayesnets.com.

Microwave plasma chemical synthesis of nanocrystalline carbon film structures and study their properties

NASA Astrophysics Data System (ADS)

Bushuev, N.; Yafarov, R.; Timoshenkov, V.; Orlov, S.; Starykh, D.

2015-08-01

The self-organization effect of diamond nanocrystals in polymer-graphite and carbon films is detected. The carbon materials deposition was carried from ethanol vapors out at low pressure using a highly non-equilibrium microwave plasma. Deposition processes of carbon film structures (diamond, graphite, graphene) is defined. Deposition processes of nanocrystalline structures containing diamond and graphite phases in different volume ratios is identified. The solid film was obtained under different conditions of microwave plasma chemical synthesis. We investigated the electrical properties of the nanocrystalline carbon films and identified it's from various factors. Influence of diamond-graphite film deposition mode in non-equilibrium microwave plasma at low pressure on emission characteristics was established. This effect is justified using the cluster model of the structure of amorphous carbon. It was shown that the reduction of bound hydrogen in carbon structures leads to a decrease in the threshold electric field of emission from 20-30 V/m to 5 V/m. Reducing the operating voltage field emission can improve mechanical stability of the synthesized film diamond-graphite emitters. Current density emission at least 20 A/cm2 was obtained. Nanocrystalline carbon film materials can be used to create a variety of functional elements in micro- and nanoelectronics and photonics such as cold electron source for emission in vacuum devices, photonic devices, cathodoluminescent flat display, highly efficient white light sources. The obtained graphene carbon net structure (with a net size about 6 μm) may be used for the manufacture of large-area transparent electrode for solar cells and cathodoluminescent light sources

Bounding the role of black carbon in the climate system: A scientific assessment

NASA Astrophysics Data System (ADS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Berntsen, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Kärcher, B.; Koch, D.; Kinne, S.; Kondo, Y.; Quinn, P. K.; Sarofim, M. C.; Schultz, M. G.; Schulz, M.; Venkataraman, C.; Zhang, H.; Zhang, S.; Bellouin, N.; Guttikunda, S. K.; Hopke, P. K.; Jacobson, M. Z.; Kaiser, J. W.; Klimont, Z.; Lohmann, U.; Schwarz, J. P.; Shindell, D.; Storelvmo, T.; Warren, S. G.; Zender, C. S.

2013-06-01

carbon aerosol plays a unique and important role in Earth's climate system. Black carbon is a type of carbonaceous material with a unique combination of physical properties. This assessment provides an evaluation of black-carbon climate forcing that is comprehensive in its inclusion of all known and relevant processes and that is quantitative in providing best estimates and uncertainties of the main forcing terms: direct solar absorption; influence on liquid, mixed phase, and ice clouds; and deposition on snow and ice. These effects are calculated with climate models, but when possible, they are evaluated with both microphysical measurements and field observations. Predominant sources are combustion related, namely, fossil fuels for transportation, solid fuels for industrial and residential uses, and open burning of biomass. Total global emissions of black carbon using bottom-up inventory methods are 7500 Gg yr-1 in the year 2000 with an uncertainty range of 2000 to 29000. However, global atmospheric absorption attributable to black carbon is too low in many models and should be increased by a factor of almost 3. After this scaling, the best estimate for the industrial-era (1750 to 2005) direct radiative forcing of atmospheric black carbon is +0.71 W m-2 with 90% uncertainty bounds of (+0.08, +1.27) W m-2. Total direct forcing by all black carbon sources, without subtracting the preindustrial background, is estimated as +0.88 (+0.17, +1.48) W m-2. Direct radiative forcing alone does not capture important rapid adjustment mechanisms. A framework is described and used for quantifying climate forcings, including rapid adjustments. The best estimate of industrial-era climate forcing of black carbon through all forcing mechanisms, including clouds and cryosphere forcing, is +1.1 W m-2 with 90% uncertainty bounds of +0.17 to +2.1 W m-2. Thus, there is a very high probability that black carbon emissions, independent of co-emitted species, have a positive forcing and warm the climate. We estimate that black carbon, with a total climate forcing of +1.1 W m-2, is the second most important human emission in terms of its climate forcing in the present-day atmosphere; only carbon dioxide is estimated to have a greater forcing. Sources that emit black carbon also emit other short-lived species that may either cool or warm climate. Climate forcings from co-emitted species are estimated and used in the framework described herein. When the principal effects of short-lived co-emissions, including cooling agents such as sulfur dioxide, are included in net forcing, energy-related sources (fossil fuel and biofuel) have an industrial-era climate forcing of +0.22 (-0.50 to +1.08) W m-2 during the first year after emission. For a few of these sources, such as diesel engines and possibly residential biofuels, warming is strong enough that eliminating all short-lived emissions from these sources would reduce net climate forcing (i.e., produce cooling). When open burning emissions, which emit high levels of organic matter, are included in the total, the best estimate of net industrial-era climate forcing by all short-lived species from black-carbon-rich sources becomes slightly negative (-0.06 W m-2 with 90% uncertainty bounds of -1.45 to +1.29 W m-2). The uncertainties in net climate forcing from black-carbon-rich sources are substantial, largely due to lack of knowledge about cloud interactions with both black carbon and co-emitted organic carbon. In prioritizing potential black-carbon mitigation actions, non-science factors, such as technical feasibility, costs, policy design, and implementation feasibility play important roles. The major sources of black carbon are presently in different stages with regard to the feasibility for near-term mitigation. This assessment, by evaluating the large number and complexity of the associated physical and radiative processes in black-carbon climate forcing, sets a baseline from which to improve future climate forcing estimates.

Bounding the Role of Black Carbon in the Climate System: a Scientific Assessment

NASA Technical Reports Server (NTRS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Bernsten, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Karcher, B.; Koch, D.;

Emission-dominated gas exchange of elemental mercury vapor over natural surfaces in China

NASA Astrophysics Data System (ADS)

Wang, Xun; Lin, Che-Jen; Yuan, Wei; Sommar, Jonas; Zhu, Wei; Feng, Xinbin

2016-09-01

Mercury (Hg) emission from natural surfaces plays an important role in global Hg cycling. The present estimate of global natural emission has large uncertainty and remains unverified against field data, particularly for terrestrial surfaces. In this study, a mechanistic model is developed for estimating the emission of elemental mercury vapor (Hg0) from natural surfaces in China. The development implements recent advancements in the understanding of air-soil and air-foliage exchange of Hg0 and redox chemistry in soil and on surfaces, incorporates the effects of soil characteristics and land use changes by agricultural activities, and is examined through a systematic set of sensitivity simulations. Using the model, the net exchange of Hg0 between the atmosphere and natural surfaces of mainland China is estimated to be 465.1 Mg yr-1, including 565.5 Mg yr-1 from soil surfaces, 9.0 Mg yr-1 from water bodies, and -100.4 Mg yr-1 from vegetation. The air-surface exchange is strongly dependent on the land use and meteorology, with 9 % of net emission from forest ecosystems; 50 % from shrubland, savanna, and grassland; 33 % from cropland; and 8 % from other land uses. Given the large agricultural land area in China, farming activities play an important role on the air-surface exchange over farmland. Particularly, rice field shift from a net sink (3.3 Mg uptake) during April-October (rice planting) to a net source when the farmland is not flooded (November-March). Summing up the emission from each land use, more than half of the total emission occurs in summer (51 %), followed by spring (28 %), autumn (13 %), and winter (8 %). Model verification is accomplished using observational data of air-soil/air-water fluxes and Hg deposition through litterfall for forest ecosystems in China and Monte Carlo simulations. In contrast to the earlier estimate by Shetty et al. (2008) that reported large emission from vegetative surfaces using an evapotranspiration approach, the estimate in this study shows natural emissions are primarily from grassland and dry cropland. Such an emission pattern may alter the current understanding of Hg emission outflow from China as reported by Lin et al. (2010b) because a substantial natural Hg emission occurs in West China.

Design and testing of large fog collectors for water harvesting in Asir region, Kingdom of Saudi Arabia

NASA Astrophysics Data System (ADS)

Abualhamayel, H. I.; Gandhidasan, P.

2010-07-01

The region of Asir is located in the southwestern part of the Kingdom of Saudi Arabia between longitudes 41 - 45 E and latitudes 17 - 21 N. Known for its natural beauty and cool climate delight the visitors and the region has become a destination for tourists. One of the main problems in the Asir region is the high demand for water during tourism seasons especially in view of the rapidly growing tourism sector. Flourishing tourism in the region is challenged by the scarcity of water resources and there is urgent need to identify alternative sources of potable water. It is found that fog water collection is a viable resource and Asir region is the most suitable location for fog water harvesting. An operational fog water collection project was initiated in 2007 to provide fresh water supply. Al-Sooda, situated at an altitude of about 3,000 m, was identified as the most suitable experimental site and two large fog collectors measuring 20 m by 2 m each were erected in 2009. The distance between the two sites is about 2 km. This paper gives the methods used to select the experimental site and the design of the large fog collection system. The fog collectors are flat rectangular nets supported by a post at both ends and arranged perpendicular to the direction of the prevailing wind. The collection surface, comprising two layers of black polypropylene mesh net, is fastened laterally to the posts with a set of fastening bars. The aluminum trough located below the mesh net catches the water that runs down the net and carries it to a pipe connected to the storage tank. Because the fog collectors are long and require space for guy wires for the posts, the basic site consideration is that at least 25 m of horizontal land available for the erection. Meteorological instruments and the portable weather station are used to measure the climatic data which are recorded three times a day, namely at 7:00, 14:00 and 19:00 h. On average, yields of about 5 to 6 L/m2 per day are collected. The fog water collected has been analyzed for its quality and found to be potable, free from minerals. The experimental results are presented and discussed in the paper. Further studies are in progress.

Boreal peatland pools C release: implication for the contemporary C exchange

NASA Astrophysics Data System (ADS)

Pelletier, L.; Strachan, I. B.; Garneau, M.; Roulet, N. T.

2013-12-01

Peatland ecosystems are considered to be net-sinks for carbon, with long-term accumulation rates ranging between 3 and 71 g C m-2 yr-1. However, the net carbon exchange rates vary significantly across the surface of these ecosystems, both in terms of magnitude and direction of the fluxes. Boreal peatlands are characterized by microforms ranging from dry hummocks, to lawns, to wet hollows and pools, which have distinct physical and chemical properties. While the hummocks and lawns absorb C due to the positive balance between gross primary production (CO2 uptake) and respiration (CO2 and CH4 release), pools represent net sources of carbon to the atmosphere. Annual pool C fluxes have been poorly documented and their contribution to the ecosystem level C budget is often ignored, even if they cover a significant portion of the peatland surface. Furthermore, the net ecosystem CO2 exchange (NEE) of these peatlands remains largely unknown. In this study, we examine the dynamics of the atmospheric exchange of CO2 and CH4 from peatland pools. Dissolved CO2 and CH4 were measured sporadically in five pools using the headspace technique and continuously with an NDIR sensor (CO2 for one pool only) over a 16-month period. Fluxes were calculated using the thin boundary layer model. We measured spring release and growing season (May to October) NEE-CO2 and CH4 fluxes in the same peatland using an eddy covariance tower to see how the presence of pools impacts the contemporary C exchange at the ecosystem level.

Charged anisotropic matter with linear or nonlinear equation of state

NASA Astrophysics Data System (ADS)

Varela, Victor; Rahaman, Farook; Ray, Saibal; Chakraborty, Koushik; Kalam, Mehedi

2010-08-01

Ivanov pointed out substantial analytical difficulties associated with self-gravitating, static, isotropic fluid spheres when pressure explicitly depends on matter density. Simplifications achieved with the introduction of electric charge were noticed as well. We deal with self-gravitating, charged, anisotropic fluids and get even more flexibility in solving the Einstein-Maxwell equations. In order to discuss analytical solutions we extend Krori and Barua’s method to include pressure anisotropy and linear or nonlinear equations of state. The field equations are reduced to a system of three algebraic equations for the anisotropic pressures as well as matter and electrostatic energy densities. Attention is paid to compact sources characterized by positive matter density and positive radial pressure. Arising solutions satisfy the energy conditions of general relativity. Spheres with vanishing net charge contain fluid elements with unbounded proper charge density located at the fluid-vacuum interface. Notably the electric force acting on these fluid elements is finite, although the acting electric field is zero. Net charges can be huge (1019C) and maximum electric field intensities are very large (1023-1024statvolt/cm) even in the case of zero net charge. Inward-directed fluid forces caused by pressure anisotropy may allow equilibrium configurations with larger net charges and electric field intensities than those found in studies of charged isotropic fluids. Links of these results with charged strange quark stars as well as models of dark matter including massive charged particles are highlighted. The van der Waals equation of state leading to matter densities constrained by cubic polynomial equations is briefly considered. The fundamental question of stability is left open.

Neural network technologies

NASA Technical Reports Server (NTRS)

Villarreal, James A.

1991-01-01

A whole new arena of computer technologies is now beginning to form. Still in its infancy, neural network technology is a biologically inspired methodology which draws on nature's own cognitive processes. The Software Technology Branch has provided a software tool, Neural Execution and Training System (NETS), to industry, government, and academia to facilitate and expedite the use of this technology. NETS is written in the C programming language and can be executed on a variety of machines. Once a network has been debugged, NETS can produce a C source code which implements the network. This code can then be incorporated into other software systems. Described here are various software projects currently under development with NETS and the anticipated future enhancements to NETS and the technology.

Swimming Motility Mediates the Formation of Neutrophil Extracellular Traps Induced by Flagellated Pseudomonas aeruginosa

PubMed Central

Sil, Payel; Chassaing, Benoit; Yoo, Dae-goon; Gewirtz, Andrew T.; Goldberg, Joanna B.; McCarter, Linda L.; Rada, Balázs

2016-01-01

Pseudomonas aeruginosa is an opportunistic pathogen causing severe infections often characterized by robust neutrophilic infiltration. Neutrophils provide the first line of defense against P. aeruginosa. Aside from their defense conferred by phagocytic activity, neutrophils also release neutrophil extracellular traps (NETs) to immobilize bacteria. Although NET formation is an important antimicrobial process, the details of its mechanism are largely unknown. The identity of the main components of P. aeruginosa responsible for triggering NET formation is unclear. In this study, our focus was to identify the main bacterial factors mediating NET formation and to gain insight into the underlying mechanism. We found that P. aeruginosa in its exponential growth phase promoted strong NET formation in human neutrophils while its NET-inducing ability dramatically decreased at later stages of bacterial growth. We identified the flagellum as the primary component of P. aeruginosa responsible for inducing NET extrusion as flagellum-deficient bacteria remained seriously impaired in triggering NET formation. Purified P. aeruginosa flagellin, the monomeric component of the flagellum, does not stimulate NET formation in human neutrophils. P. aeruginosa-induced NET formation is independent of the flagellum-sensing receptors TLR5 and NLRC4 in both human and mouse neutrophils. Interestingly, we found that flagellar motility, not flagellum binding to neutrophils per se, mediates NET release induced by flagellated bacteria. Immotile, flagellar motor-deficient bacterial strains producing paralyzed flagella did not induce NET formation. Forced contact between immotile P. aeruginosa and neutrophils restored their NET-inducing ability. Both the motAB and motCD genetic loci encoding flagellar motor genes contribute to maximal NET release; however the motCD genes play a more important role. Phagocytosis of P. aeruginosa and superoxide production by neutrophils were also largely dependent upon a functional flagellum. Taken together, the flagellum is herein presented for the first time as the main organelle of planktonic bacteria responsible for mediating NET release. Furthermore, flagellar motility, rather than binding of the flagellum to flagellum-sensing receptors on host cells, is required for P. aeruginosa to induce NET release. PMID:27855208

Base Station Placement Algorithm for Large-Scale LTE Heterogeneous Networks.

PubMed

Lee, Seungseob; Lee, SuKyoung; Kim, Kyungsoo; Kim, Yoon Hyuk

2015-01-01

Data traffic demands in cellular networks today are increasing at an exponential rate, giving rise to the development of heterogeneous networks (HetNets), in which small cells complement traditional macro cells by extending coverage to indoor areas. However, the deployment of small cells as parts of HetNets creates a key challenge for operators' careful network planning. In particular, massive and unplanned deployment of base stations can cause high interference, resulting in highly degrading network performance. Although different mathematical modeling and optimization methods have been used to approach various problems related to this issue, most traditional network planning models are ill-equipped to deal with HetNet-specific characteristics due to their focus on classical cellular network designs. Furthermore, increased wireless data demands have driven mobile operators to roll out large-scale networks of small long term evolution (LTE) cells. Therefore, in this paper, we aim to derive an optimum network planning algorithm for large-scale LTE HetNets. Recently, attempts have been made to apply evolutionary algorithms (EAs) to the field of radio network planning, since they are characterized as global optimization methods. Yet, EA performance often deteriorates rapidly with the growth of search space dimensionality. To overcome this limitation when designing optimum network deployments for large-scale LTE HetNets, we attempt to decompose the problem and tackle its subcomponents individually. Particularly noting that some HetNet cells have strong correlations due to inter-cell interference, we propose a correlation grouping approach in which cells are grouped together according to their mutual interference. Both the simulation and analytical results indicate that the proposed solution outperforms the random-grouping based EA as well as an EA that detects interacting variables by monitoring the changes in the objective function algorithm in terms of system throughput performance.

CO2 exchange in the Hudson Bay lowlands: Community characteristics and multispectral reflectance properties

NASA Technical Reports Server (NTRS)

Whiting, Gary J.

1994-01-01

Net ecosystem CO2 exchange was measured during the 1990 growing season (June to August) along a transect starting 10 km inland from James Bay and extending 100 km interior to Kinosheo Lake, Ontario. Sites were chosen in three distinct areas: a coastal fen, an interior fen, and a bog. For the most productive sites in the bog, net daily uptake rates reached a maximum of 2.5 g C-CO2 m(exp -2)/d with an area-weighted exchange of 0.3 g C-CO2 m(exp -2)/d near midsummer. This site was estimated to be a net carbon source of 9 g C-CO2 m(exp -2) to the atmosphere over a 153-day growing season. The interior fen was less productive on a daily basis with a net maximum uptake of 0.5 g C-CO2 m(exp -2)/d and with corresponding area-weighted uptake of 0.1 g C-CO2 m(exp -2)/d during midsummer. Early and late season release of carbon to the atmosphere resulted in a net loss of 21 g C-CO2 m(exp -2) over the growing season from this site. The coastal fen was the most productive site with uptake rates peaking near 1.7 g C-CO2 m(exp -2)/d which corresponded to an area-weighted uptake of 0.8 g C-CO2 m(exp -2)/d during midsummer and an estimated net uptake of 6 g C-CO2 m(exp -2) for the growing season. Associated with net CO2 exchange measurements, multispectral reflectance properties of the sites were measured over the growing season using portable radiometers. These properties were related to exchange rates with the goal of examining the potential for satellite remote sensing to monitor biosphere/atmosphere CO2 exchange in this biome. The normalized difference vegetation index (NDVI) computed from surface reflectance was correlated with net CO2 exchange for all sites with the exception of areas with large proportions of Sphagnum moss cover. These mosses have greater near-infrared reflectance than typical surrounding vegetation and may require special adjustment for regional exchange/remote sensing applications.

Current in nanojunctions: Effects of reservoir coupling

NASA Astrophysics Data System (ADS)

Yadalam, Hari Kumar; Harbola, Upendra

2018-07-01

We study the effect of system reservoir coupling on currents flowing through quantum junctions. We consider two simple double-quantum dot configurations coupled to two external fermionic reservoirs and study the net current flowing between the two reservoirs. The net current is partitioned into currents carried by the eigenstates of the system and by the coherences between the eigenstates induced due to coupling with the reservoirs. We find that current carried by populations is always positive whereas current carried by coherences are negative for large couplings. This results in a non-monotonic dependence of the net current on the coupling strength. We find that in certain cases, the net current can vanish at large couplings due to cancellation between currents carried by the eigenstates and by the coherences. These results provide new insights into the non-trivial role of system-reservoir couplings on electron transport through quantum dot junctions. In the presence of weak coulomb interactions, net current as a function of system reservoir coupling strength shows similar trends as for the non-interacting case.

Carbon dioxide sources from Alaska driven by increasing early winter respiration from Arctic tundra

PubMed Central

Lindaas, Jakob; Benmergui, Joshua; Luus, Kristina A.; Chang, Rachel Y.-W.; Daube, Bruce C.; Euskirchen, Eugénie S.; Karion, Anna; Miller, John B.; Miller, Scot M.; Parazoo, Nicholas C.; Randerson, James T.; Sweeney, Colm; Thoning, Kirk; Veraverbeke, Sander; Miller, Charles E.; Wofsy, Steven C.

2017-01-01

High-latitude ecosystems have the capacity to release large amounts of carbon dioxide (CO2) to the atmosphere in response to increasing temperatures, representing a potentially significant positive feedback within the climate system. Here, we combine aircraft and tower observations of atmospheric CO2 with remote sensing data and meteorological products to derive temporally and spatially resolved year-round CO2 fluxes across Alaska during 2012–2014. We find that tundra ecosystems were a net source of CO2 to the atmosphere annually, with especially high rates of respiration during early winter (October through December). Long-term records at Barrow, AK, suggest that CO2 emission rates from North Slope tundra have increased during the October through December period by 73% ± 11% since 1975, and are correlated with rising summer temperatures. Together, these results imply increasing early winter respiration and net annual emission of CO2 in Alaska, in response to climate warming. Our results provide evidence that the decadal-scale increase in the amplitude of the CO2 seasonal cycle may be linked with increasing biogenic emissions in the Arctic, following the growing season. Early winter respiration was not well simulated by the Earth System Models used to forecast future carbon fluxes in recent climate assessments. Therefore, these assessments may underestimate the carbon release from Arctic soils in response to a warming climate. PMID:28484001

Ethanol or bioelectricity? Life cycle assessment of lignocellulosic bioenergy use in light-duty vehicles.

PubMed

Luk, Jason M; Pourbafrani, Mohammad; Saville, Bradley A; MacLean, Heather L

2013-09-17

Our study evaluates life cycle energy use and GHG emissions of lignocellulosic ethanol and bioelectricity use in U.S. light-duty vehicles. The well-to-pump, pump-to-wheel, and vehicle cycle stages are modeled. All ethanol (E85) and bioelectricity pathways have similar life cycle fossil energy use (~ 100 MJ/100 vehicle kilometers traveled (VKT)) and net GHG emissions (~5 kg CO2eq./100 VKT), considerably lower (65-85%) than those of reference gasoline and U.S. grid-electricity pathways. E85 use in a hybrid vehicle and bioelectricity use in a fully electric vehicle also have similar life cycle biomass and total energy use (~ 350 and ~450 MJ/100 VKT, respectively); differences in well-to-pump and pump-to-wheel efficiencies can largely offset each other. Our energy use and net GHG emissions results contrast with findings in literature, which report better performance on these metrics for bioelectricity compared to ethanol. The primary source of differences in the studies is related to our development of pathways with comparable vehicle characteristics. Ethanol or vehicle electrification can reduce petroleum use, while bioelectricity may displace nonpetroleum energy sources. Regional characteristics may create conditions under which either ethanol or bioelectricity may be the superior option; however, neither has a clear advantage in terms of GHG emissions or energy use.

Carbon dioxide sources from Alaska driven by increasing early winter respiration from Arctic tundra.

PubMed

Commane, Róisín; Lindaas, Jakob; Benmergui, Joshua; Luus, Kristina A; Chang, Rachel Y-W; Daube, Bruce C; Euskirchen, Eugénie S; Henderson, John M; Karion, Anna; Miller, John B; Miller, Scot M; Parazoo, Nicholas C; Randerson, James T; Sweeney, Colm; Tans, Pieter; Thoning, Kirk; Veraverbeke, Sander; Miller, Charles E; Wofsy, Steven C

2017-05-23

High-latitude ecosystems have the capacity to release large amounts of carbon dioxide (CO 2 ) to the atmosphere in response to increasing temperatures, representing a potentially significant positive feedback within the climate system. Here, we combine aircraft and tower observations of atmospheric CO 2 with remote sensing data and meteorological products to derive temporally and spatially resolved year-round CO 2 fluxes across Alaska during 2012-2014. We find that tundra ecosystems were a net source of CO 2 to the atmosphere annually, with especially high rates of respiration during early winter (October through December). Long-term records at Barrow, AK, suggest that CO 2 emission rates from North Slope tundra have increased during the October through December period by 73% ± 11% since 1975, and are correlated with rising summer temperatures. Together, these results imply increasing early winter respiration and net annual emission of CO 2 in Alaska, in response to climate warming. Our results provide evidence that the decadal-scale increase in the amplitude of the CO 2 seasonal cycle may be linked with increasing biogenic emissions in the Arctic, following the growing season. Early winter respiration was not well simulated by the Earth System Models used to forecast future carbon fluxes in recent climate assessments. Therefore, these assessments may underestimate the carbon release from Arctic soils in response to a warming climate.

Carbon dioxide sources from Alaska driven by increasing early winter respiration from Arctic tundra

NASA Astrophysics Data System (ADS)

Commane, Róisín; Lindaas, Jakob; Benmergui, Joshua; Luus, Kristina A.; Chang, Rachel Y.-W.; Daube, Bruce C.; Euskirchen, Eugénie S.; Henderson, John M.; Karion, Anna; Miller, John B.; Miller, Scot M.; Parazoo, Nicholas C.; Randerson, James T.; Sweeney, Colm; Tans, Pieter; Thoning, Kirk; Veraverbeke, Sander; Miller, Charles E.; Wofsy, Steven C.

2017-05-01

High-latitude ecosystems have the capacity to release large amounts of carbon dioxide (CO2) to the atmosphere in response to increasing temperatures, representing a potentially significant positive feedback within the climate system. Here, we combine aircraft and tower observations of atmospheric CO2 with remote sensing data and meteorological products to derive temporally and spatially resolved year-round CO2 fluxes across Alaska during 2012-2014. We find that tundra ecosystems were a net source of CO2 to the atmosphere annually, with especially high rates of respiration during early winter (October through December). Long-term records at Barrow, AK, suggest that CO2 emission rates from North Slope tundra have increased during the October through December period by 73% ± 11% since 1975, and are correlated with rising summer temperatures. Together, these results imply increasing early winter respiration and net annual emission of CO2 in Alaska, in response to climate warming. Our results provide evidence that the decadal-scale increase in the amplitude of the CO2 seasonal cycle may be linked with increasing biogenic emissions in the Arctic, following the growing season. Early winter respiration was not well simulated by the Earth System Models used to forecast future carbon fluxes in recent climate assessments. Therefore, these assessments may underestimate the carbon release from Arctic soils in response to a warming climate.

Widespread methanotrophic primary production in lowland chalk rivers.

PubMed

Shelley, Felicity; Grey, Jonathan; Trimmer, Mark

2014-05-22

Methane is oversaturated relative to the atmosphere in many rivers, yet its cycling and fate is poorly understood. While photosynthesis is the dominant source of autotrophic carbon to rivers, chemosynthesis and particularly methane oxidation could provide alternative sources of primary production where the riverbed is heavily shaded or at depth beneath the sediment surface. Here, we highlight geographically widespread methanotrophic carbon fixation within the gravel riverbeds of over 30 chalk rivers. In 15 of these, the potential for methane oxidation (methanotrophy) was also compared with photosynthesis. In addition, we performed detailed concurrent measurements of photosynthesis and methanotrophy in one large chalk river over a complete annual cycle, where we found methanotrophy to be active to at least 15 cm into the riverbed and to be strongly substrate limited. The seasonal trend in methanotrophic activity reflected that of the riverine methane concentrations, and thus the highest rates were measured in mid-summer. At the sediment surface, photosynthesis was limited by light for most of the year with heavy shading induced by dense beds of aquatic macrophytes. Across 15 rivers, in late summer, we conservatively calculated that net methanotrophy was equivalent to between 1% and 46% of benthic net photosynthetic production within the gravel riverbed, with a median value of 4%. Hence, riverbed chemosynthesis, coupled to the oxidation of methane, is widespread and significant in English chalk rivers.

Widespread methanotrophic primary production in lowland chalk rivers

PubMed Central

Shelley, Felicity; Grey, Jonathan; Trimmer, Mark

2014-01-01

Methane is oversaturated relative to the atmosphere in many rivers, yet its cycling and fate is poorly understood. While photosynthesis is the dominant source of autotrophic carbon to rivers, chemosynthesis and particularly methane oxidation could provide alternative sources of primary production where the riverbed is heavily shaded or at depth beneath the sediment surface. Here, we highlight geographically widespread methanotrophic carbon fixation within the gravel riverbeds of over 30 chalk rivers. In 15 of these, the potential for methane oxidation (methanotrophy) was also compared with photosynthesis. In addition, we performed detailed concurrent measurements of photosynthesis and methanotrophy in one large chalk river over a complete annual cycle, where we found methanotrophy to be active to at least 15 cm into the riverbed and to be strongly substrate limited. The seasonal trend in methanotrophic activity reflected that of the riverine methane concentrations, and thus the highest rates were measured in mid-summer. At the sediment surface, photosynthesis was limited by light for most of the year with heavy shading induced by dense beds of aquatic macrophytes. Across 15 rivers, in late summer, we conservatively calculated that net methanotrophy was equivalent to between 1% and 46% of benthic net photosynthetic production within the gravel riverbed, with a median value of 4%. Hence, riverbed chemosynthesis, coupled to the oxidation of methane, is widespread and significant in English chalk rivers. PMID:24695425

North America's net terrestrial CO2 exchange with the atmosphere 1990-2009

NASA Astrophysics Data System (ADS)

King, A. W.; Andres, R. J.; Davis, K. J.; Hafer, M.; Hayes, D. J.; Huntzinger, D. N.; de Jong, B.; Kurz, W. A.; McGuire, A. D.; Vargas, R.; Wei, Y.; West, T. O.; Woodall, C. W.

2015-01-01

Scientific understanding of the global carbon cycle is required for developing national and international policy to mitigate fossil fuel CO2 emissions by managing terrestrial carbon uptake. Toward that understanding and as a contribution to the REgional Carbon Cycle Assessment and Processes (RECCAP) project, this paper provides a synthesis of net land-atmosphere CO2 exchange for North America (Canada, United States, and Mexico) over the period 1990-2009. Only CO2 is considered, not methane or other greenhouse gases. This synthesis is based on results from three different methods: atmospheric inversion, inventory-based methods and terrestrial biosphere modeling. All methods indicate that the North American land surface was a sink for atmospheric CO2, with a net transfer from atmosphere to land. Estimates ranged from -890 to -280 Tg C yr-1, where the mean of atmospheric inversion estimates forms the lower bound of that range (a larger land sink) and the inventory-based estimate using the production approach the upper (a smaller land sink). This relatively large range is due in part to differences in how the approaches represent trade, fire and other disturbances and which ecosystems they include. Integrating across estimates, "best" estimates (i.e., measures of central tendency) are -472 ± 281 Tg C yr-1 based on the mean and standard deviation of the distribution and -360 Tg C yr-1 (with an interquartile range of -496 to -337) based on the median. Considering both the fossil fuel emissions source and the land sink, our analysis shows that North America was, however, a net contributor to the growth of CO2 in the atmosphere in the late 20th and early 21st century. With North America's mean annual fossil fuel CO2 emissions for the period 1990-2009 equal to 1720 Tg C yr-1 and assuming the estimate of -472 Tg C yr-1 as an approximation of the true terrestrial CO2 sink, the continent's source : sink ratio for this time period was 1720:472, or nearly 4:1.

North America's net terrestrial CO 2 exchange with the atmosphere 1990–2009

DOE PAGES

King, Anthony W.; Andres, Robert; Davis, Kenneth J.; ...

2015-01-21

Scientific understanding of the global carbon cycle is required for developing national and international policy to mitigate fossil fuel CO 2 emissions by managing terrestrial carbon uptake. Toward that understanding and as a contribution to the REgional Carbon Cycle Assessment and Processes (RECCAP) project, this paper provides a synthesis of net land–atmosphere CO 2 exchange for North America (Canada, United States, and Mexico) over the period 1990–2009. Only CO 2 is considered, not methane or other greenhouse gases. This synthesis is based on results from three different methods: atmospheric inversion, inventory-based methods and terrestrial biosphere modeling. All methods indicate thatmore » the North American land surface was a sink for atmospheric CO 2, with a net transfer from atmosphere to land. Estimates ranged from -890 to -280 Tg C yr -1, where the mean of atmospheric inversion estimates forms the lower bound of that range (a larger land sink) and the inventory-based estimate using the production approach the upper (a smaller land sink). This relatively large range is due in part to differences in how the approaches represent trade, fire and other disturbances and which ecosystems they include. Integrating across estimates, \\"best\\" estimates (i.e., measures of central tendency) are -472 ± 281 Tg C yr -1 based on the mean and standard deviation of the distribution and -360 Tg C yr -1 (with an interquartile range of -496 to -337) based on the median. Considering both the fossil fuel emissions source and the land sink, our analysis shows that North America was, however, a net contributor to the growth of CO 2 in the atmosphere in the late 20th and early 21st century. With North America's mean annual fossil fuel CO 2 emissions for the period 1990–2009 equal to 1720 Tg C yr -1 and assuming the estimate of -472 Tg C yr -1 as an approximation of the true terrestrial CO 2 sink, the continent's source : sink ratio for this time period was 1720:472, or nearly 4:1.« less

Short-term and seasonal pH,pCO2and saturation state variability in a coral-reef ecosystem

NASA Astrophysics Data System (ADS)

Gray, Sarah E. C.; Degrandpre, Michael D.; Langdon, Chris; Corredor, Jorge E.

2012-09-01

Coral reefs are predicted to be one of the ecosystems most sensitive to ocean acidification. To improve predictions of coral reef response to acidification, we need to better characterize the natural range of variability of pH, partial pressure of carbon dioxide (pCO2) and calcium carbonate saturation states (Ω). In this study, autonomous sensors for pH and pCO2 were deployed on Media Luna reef, Puerto Rico over three seasons from 2007 to 2008. High temporal resolution CaCO3 saturation states were calculated from the in situ data, giving a much more detailed characterization of reef saturation states than previously possible. Reef pH, pCO2 and aragonite saturation (ΩAr) ranged from 7.89 to 8.17 pH units, 176-613 μatm and 2.7-4.7, respectively, in the range characteristic of most other previously studied reef ecosystems. The diel pH, pCO2 and Ω cycles were also large, encompassing about half of the seasonal range of variability. Warming explained about 50% of the seasonal supersaturation in mean pCO2, with the remaining supersaturation primarily due to net heterotrophy and net CaCO3 production. Net heterotrophy was likely driven by remineralization of mangrove derived organic carbon which continued into the fall, sustaining high pCO2 levels until early winter when the pCO2 returned to offshore values. As a consequence, the reef was a source of CO2 to the atmosphere during the summer and fall and a sink during winter, resulting in a net annual source of 0.73 ± 1.7 mol m-2 year-1. These results show that reefs are exposed to a wide range of saturation states in their natural environment. Mean ΩAr levels will drop to 3.0 when atmospheric CO2 increases to 500 μatm and ΩAr will be less than 3.0 for greater than 70% of the time in the summer. Long duration exposure to these low ΩAr levels are expected to significantly decrease calcification rates on the reef.

North America's net terrestrial CO2 exchange with the atmosphere 1990–2009

USGS Publications Warehouse

King, A.W.; Andres, R.J.; Davis, K.J.; Hafer, M.; Hayes, D.J.; Huntzinger, Deborah N.; de Jong, Bernardus; Kurz, W.A.; McGuire, A. David; Vargas, Rodrigo I.; Wei, Y.; West, Tristram O.; Woodall, Christopher W.

2015-01-01

Scientific understanding of the global carbon cycle is required for developing national and international policy to mitigate fossil fuel CO2 emissions by managing terrestrial carbon uptake. Toward that understanding and as a contribution to the REgional Carbon Cycle Assessment and Processes (RECCAP) project, this paper provides a synthesis of net land–atmosphere CO2 exchange for North America (Canada, United States, and Mexico) over the period 1990–2009. Only CO2 is considered, not methane or other greenhouse gases. This synthesis is based on results from three different methods: atmospheric inversion, inventory-based methods and terrestrial biosphere modeling. All methods indicate that the North American land surface was a sink for atmospheric CO2, with a net transfer from atmosphere to land. Estimates ranged from −890 to −280 Tg C yr−1, where the mean of atmospheric inversion estimates forms the lower bound of that range (a larger land sink) and the inventory-based estimate using the production approach the upper (a smaller land sink). This relatively large range is due in part to differences in how the approaches represent trade, fire and other disturbances and which ecosystems they include. Integrating across estimates, "best" estimates (i.e., measures of central tendency) are −472 ± 281 Tg C yr−1 based on the mean and standard deviation of the distribution and −360 Tg C yr−1 (with an interquartile range of −496 to −337) based on the median. Considering both the fossil fuel emissions source and the land sink, our analysis shows that North America was, however, a net contributor to the growth of CO2 in the atmosphere in the late 20th and early 21st century. With North America's mean annual fossil fuel CO2 emissions for the period 1990–2009 equal to 1720 Tg C yr−1 and assuming the estimate of −472 Tg C yr−1 as an approximation of the true terrestrial CO2 sink, the continent's source : sink ratio for this time period was 1720:472, or nearly 4:1.

North America's net terrestrial CO 2 exchange with the atmosphere 1990–2009

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, Anthony W.; Andres, Robert; Davis, Kenneth J.

Scientific understanding of the global carbon cycle is required for developing national and international policy to mitigate fossil fuel CO 2 emissions by managing terrestrial carbon uptake. Toward that understanding and as a contribution to the REgional Carbon Cycle Assessment and Processes (RECCAP) project, this paper provides a synthesis of net land–atmosphere CO 2 exchange for North America (Canada, United States, and Mexico) over the period 1990–2009. Only CO 2 is considered, not methane or other greenhouse gases. This synthesis is based on results from three different methods: atmospheric inversion, inventory-based methods and terrestrial biosphere modeling. All methods indicate thatmore » the North American land surface was a sink for atmospheric CO 2, with a net transfer from atmosphere to land. Estimates ranged from -890 to -280 Tg C yr -1, where the mean of atmospheric inversion estimates forms the lower bound of that range (a larger land sink) and the inventory-based estimate using the production approach the upper (a smaller land sink). This relatively large range is due in part to differences in how the approaches represent trade, fire and other disturbances and which ecosystems they include. Integrating across estimates, \\"best\\" estimates (i.e., measures of central tendency) are -472 ± 281 Tg C yr -1 based on the mean and standard deviation of the distribution and -360 Tg C yr -1 (with an interquartile range of -496 to -337) based on the median. Considering both the fossil fuel emissions source and the land sink, our analysis shows that North America was, however, a net contributor to the growth of CO 2 in the atmosphere in the late 20th and early 21st century. With North America's mean annual fossil fuel CO 2 emissions for the period 1990–2009 equal to 1720 Tg C yr -1 and assuming the estimate of -472 Tg C yr -1 as an approximation of the true terrestrial CO 2 sink, the continent's source : sink ratio for this time period was 1720:472, or nearly 4:1.« less

Methylmercury and other chemical constituents in Pacific coastal fog water from seven sites in Central/Northern California (FogNet) during the summer of 2014

NASA Astrophysics Data System (ADS)

Weiss-Penzias, P. S.; Heim, W. A.; Fernandez, D.; Coale, K. H.; Oliphant, A. J.; Dann, D.; Porter, M.; Hoskins, D.; Dodge, C.

2014-12-01

This project investigates the mercury content in summertime Pacific coastal fog in California and whether fog could be an important vector for ocean emissions of mercury to be deposited via fog drip to upland coastal ecosystems. Efforts began in early 2014 with the building of 7 active-strand fog collectors based on the Colorado State University Caltech CASCC design. The new UCSC CASCC includes doors sealing the collector which open under microcomputer control based on environmental sensing (relative humidity). Seven sites spanning from Trinidad in the north to Marina in the south have collected samples June-August 2014 under a project called FogNet. Fog conditions were favorable for collecting large water volumes (> 250 mL) at many sites. Fog samplers were cleaned with soap and deionized water daily and field blanks taken immediately following cleaning. Fog water samples were collected overnight, split into an aliquot for anion and DOC/DIC analysis and the remaining sample was acidified. Monomethyl mercury (MMHg) concentrations in samples and field blanks for 3 sites in FogNet are shown in the accompanying figure. The range of MMHg concentrations from 10 fog water samples > 100 mL in volume was 0.9-9.3 ng/L (4.5-46.4 pM). Elevated MMHg concentrations (> 5 ng/L, 25 pM) were observed at 2 sites: UC Santa Cruz and Bodega Bay. The field blanks produced MMHg concentrations of 0.08-0.4 ng/L (0.4-2.0 pM), which was on average < 10% of the sample concentration and suggests the artifact due to sampling was small. The observed MMHg concentrations in fog water observed is this study are 1-2 orders of magnitude greater than MMHg concentrations seen previously in rain water samples from the California coast suggesting an additional source of MMHg to fog. Shipboard measurements of dimethyl mercury (DMHg) in coastal California seawater during the time period of FogNet operations (summer 2014) reveal surface waters that were supersaturated in DMHg which represents a potential source of organic mercury to the overlying fog bank.

Temporal variability in the sources and fluxes of CO2 in a residential area in an evergreen subtropical city

NASA Astrophysics Data System (ADS)

Weissert, L. F.; Salmond, J. A.; Turnbull, J. C.; Schwendenmann, L.

2016-10-01

Measurements of CO2 fluxes in temperate climates have shown that urban areas are a net source of CO2 and that photosynthetic CO2 uptake is generally not sufficient to offset local CO2 emissions. However, little is known about the role of vegetation in cities where biogenic CO2 uptake is not limited to a 2-8 months growing season. This study used the eddy covariance technique to quantify the atmospheric CO2 fluxes over a period of 12 months in a residential area in subtropical Auckland, New Zealand, where the vegetation cover (surface cover fraction: 47%) is dominated by evergreen vegetation. Radiocarbon isotope measurements of CO2 were conducted at three different times of the day (06:00-09:00, 12:00-15:00, 01:00-04:00) for four consecutive weekdays in summer and winter to differentiate anthropogenic sources of CO2 (fossil fuel combustion) from biogenic sources (ecosystem respiration, combustion of biofuel/biomass). The results reveal previously unreported patterns for CO2 fluxes, with no seasonal variability and negative (net uptake) CO2 midday fluxes throughout the year, demonstrating photosynthetic uptake by the evergreen vegetation all year-round. The winter radiocarbon measurements showed that 85% of the CO2 during the morning rush hour was attributed to fossil fuel emissions, when wind was from residential areas. However, for all other time periods radiocarbon measurements showed that fossil fuel combustion was not a large source of CO2, suggesting that biogenic processes likely dominate CO2 fluxes at this residential site. Overall, our findings highlight the importance of vegetation in residential areas to mitigate local CO2 emissions, particularly in cities with a climate that allows evergreen vegetation to maintain high photosynthetic rates over winter. As urban areas grow, urban planners need to consider the role of urban greenspace to mitigate urban CO2 emissions.

Ray Meta: scalable de novo metagenome assembly and profiling

PubMed Central

2012-01-01

Voluminous parallel sequencing datasets, especially metagenomic experiments, require distributed computing for de novo assembly and taxonomic profiling. Ray Meta is a massively distributed metagenome assembler that is coupled with Ray Communities, which profiles microbiomes based on uniquely-colored k-mers. It can accurately assemble and profile a three billion read metagenomic experiment representing 1,000 bacterial genomes of uneven proportions in 15 hours with 1,024 processor cores, using only 1.5 GB per core. The software will facilitate the processing of large and complex datasets, and will help in generating biological insights for specific environments. Ray Meta is open source and available at http://denovoassembler.sf.net. PMID:23259615

[Dark respiration of terrestrial vegetations: a review].

PubMed

Sun, Jin-Wei; Yuan, Feng-Hui; Guan, De-Xin; Wu, Jia-Bing

2013-06-01

The source and sink effect of terrestrial plants is one of the hotspots in terrestrial ecosystem research under the background of global change. Dark respiration of terrestrial plants accounts for a large fraction of total net carbon balance, playing an important role in the research of carbon cycle under global climate change. However, there is little study on plant dark respiration. This paper summarized the physiological processes of plant dark respiration, measurement methods of the dark respiration, and the effects of plant biology and environmental factors on the dark respiration. The uncertainty of the dark respiration estimation was analyzed, and the future hotspots of related researches were pointed out.

Crystallographic texture in oxide-dispersion-strengthened alloys

NASA Technical Reports Server (NTRS)

Whittenberger, J. D.

1982-01-01

Crystallographic and elastic moduli data are presented which document the degree of texture in several oxide dispersion-strengthened (ODS) nickel-base alloys. The existence of strong crystallographic textures in such multicrystalline alloys is considered important, since the small angle grain boundaries may be partially responsible for creep threshold stresses. Gleiter (1979) has shown that ideal, low energy boundaries will act as vacancy sources only when the applied stress is greater than a threshold stress, while large angle grain boundaries will emit vacancies at all stress levels. The continued operation of a net vacancy in an ODS alloy must be avoided, since it will lead to a localized disruption of the microstructure.

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

PubMed Central

Schumacher, André; Pireddu, Luca; Niemenmaa, Matti; Kallio, Aleksi; Korpelainen, Eija; Zanetti, Gianluigi; Heljanko, Keijo

2014-01-01

Summary: Hadoop MapReduce-based approaches have become increasingly popular due to their scalability in processing large sequencing datasets. However, as these methods typically require in-depth expertise in Hadoop and Java, they are still out of reach of many bioinformaticians. To solve this problem, we have created SeqPig, a library and a collection of tools to manipulate, analyze and query sequencing datasets in a scalable and simple manner. SeqPigscripts use the Hadoop-based distributed scripting engine Apache Pig, which automatically parallelizes and distributes data processing tasks. We demonstrate SeqPig’s scalability over many computing nodes and illustrate its use with example scripts. Availability and Implementation: Available under the open source MIT license at http://sourceforge.net/projects/seqpig/ Contact: andre.schumacher@yahoo.com Supplementary information: Supplementary data are available at Bioinformatics online. PMID:24149054

Seasonal relationships between precipitation, forest floor, and streamwater nitrogen, Isle Royale, Michigan

USGS Publications Warehouse

Stottlemyer, R.; Toczydlowski, D.

1999-01-01

The Upper Great Lakes receive large amounts of precipitation-NH4/+ and moderate NO3/- inputs. Increased atmospheric inorganic N input has led to concern about ecosystem capacity to utilize excess N. This paper summarizes a 5-yr study of seasonal N content and flux in precipitation, snowpack, forest floor, and streamwater in order to assess the source of inorganic N outputs in streamflow from a small boreal watershed. Average precipitation N input was 3 kg ha-1 yr-1. The peak snowpack N content averaged 0.55 kg ha-1. The forest floor inorganic N pool was ???2 kg ha-1, eight times larger than monthly precipitation N input. The inorganic N pool size peaked in spring and early summer. Ninety percent of the forest floor inorganic N pool was made up of NH4/+-N. Forest floor inorganic N pools generally increased with temperature. Net N mineralization was 15 kg ha-1 yr-1, and monthly rates peaked in early summer. During winter, the mean monthly net N mineralization rate was twice the peak snowpack N content. Streamwater NO3/- concentration peaked in winter, and inorganic N output peaked in late fall. Beneath the dominant boreal forest species, net N mineralization rates were positively correlated (P < 0.05) with streamwater NO3/- concentrations. Forest floor NO3/- pools beneath alder [Alnus rugosa (Du Roi) Spreng] were positively correlated (P < 0.01) to streamwater NO3/- output. At the watershed mouth, streamwater NO3/- concentrations were positively correlated (P < 0.05) with precipitation NO3/- input and precipitation amount. The relatively small snowpack N content and seasonal precipitation N input compared to forest floor inorganic N pools and net N mineralization rates, the strong ecosystem retention of precipitation N inputs, and the seasonal streamwater NO3/- concentration and output pattern all indicated that little streamwater NO3/- came directly from precipitation or snowmelt.The Upper Great Lakes receive large amounts of precipitation-NH4+ and moderate NO3- inputs. Increased atmospheric inorganic N input has led to concern about ecosystem capacity to utilize excess N. This paper summarizes a 5-yr study of seasonal N content and flux in precipitation, snowpack, forest floor, and streamwater in order to assess the source of inorganic N outputs in streamflow from a small boreal watershed. Average precipitation N input was 3 kg ha-1 yr-1. The peak snowpack N content averaged 0.55 kg ha-1. The forest floor inorganic N pool was ??? 2 kg ha-1, eight times larger than monthly precipitation N input. The inorganic N pool size peaked in spring and early summer. Ninety percent of the forest floor inorganic N pool was made up of NH4+-N. Forest floor inorganic N pools generally increased with temperature. Net N mineralization was 15 kg ha-1 yr-1, and monthly rates peaked in early summer. During winter, the mean monthly net N mineralization rate was twice the peak snowpack N content. Streamwater NO3- concentration peaked in winter, and inorganic N output peaked in late fall. Beneath the dominant boreal forest species, net N mineralization rates were positively correlated (P < 0.05) with streamwater NO3- concentrations. Forest floor NO3- pools beneath alder [Alnus rugosa (Du Roi) Spreng] were positively correlated (P<0.01) to streamwater NO3- output. At the watershed mouth, streamwater NO3- concentrations were positively correlated (P < 0.05) with precipitation NO3- input and precipitation amount. The relatively small snowpack N content and seasonal precipitation N input compared to forest floor inorganic N pools and net N mineralization rates, the strong ecosystem retention of precipitation N inputs, and the seasonal streamwater NO3- concentration and output pattern all indicated that little streamwater NO3- came directly from precipitation or snowmelt.

Reducing methylmercury accumulation in the food webs of San Francisco Bay and its local watersheds.

PubMed

Davis, J A; Looker, R E; Yee, D; Marvin-Di Pasquale, M; Grenier, J L; Austin, C M; McKee, L J; Greenfield, B K; Brodberg, R; Blum, J D

2012-11-01

San Francisco Bay (California, USA) and its local watersheds present an interesting case study in estuarine mercury (Hg) contamination. This review focuses on the most promising avenues for attempting to reduce methylmercury (MeHg) contamination in Bay Area aquatic food webs and identifying the scientific information that is most urgently needed to support these efforts. Concern for human exposure to MeHg in the region has led to advisories for consumption of sport fish. Striped bass from the Bay have the highest average Hg concentration measured for this species in USA estuaries, and this degree of contamination has been constant for the past 40 years. Similarly, largemouth bass in some Bay Area reservoirs have some of the highest Hg concentrations observed in the entire US. Bay Area wildlife, particularly birds, face potential impacts to reproduction based on Hg concentrations in the tissues of several Bay species. Source control of Hg is one of the primary possible approaches for reducing MeHg accumulation in Bay Area aquatic food webs. Recent findings (particularly Hg isotope measurements) indicate that the decades-long residence time of particle-associated Hg in the Bay is sufficient to allow significant conversion of even the insoluble forms of Hg into MeHg. Past inputs have been thoroughly mixed throughout this shallow and dynamic estuary. The large pool of Hg already present in the ecosystem dominates the fraction converted to MeHg and accumulating in the food web. Consequently, decreasing external Hg inputs can be expected to reduce MeHg in the food web, but it will likely take many decades to centuries before those reductions are achieved. Extensive efforts to reduce loads from the largest Hg mining source (the historic New Almaden mining district) are underway. Hg is spread widely across the urban landscape, but there are a number of key sources, source areas, and pathways that provide opportunities to capture larger quantities of Hg and reduce loads from urban runoff. Atmospheric deposition is a lower priority for source control in the Bay Area due to a combination of a lack of major local sources. Internal net production of MeHg is the dominant source of MeHg that enters the food web. Controlling internal net production is the second primary management approach, and has the potential to reduce food web MeHg in some habitats more effectively and within a much shorter time-frame. Controlling net MeHg production and accumulation in the food web of upstream reservoirs and ponds is very promising due to the many features of these ecosystems that can be manipulated. The most feasible control options in tidal marshes relate to the design of flow patterns and subhabitats in restoration projects. Options for controlling MeHg production in open Bay habitat are limited due primarily to the highly dispersed distribution of Hg throughout the ecosystem. Other changes in these habitats may also have a large influence on food web MeHg, including temperature changes due to global warming, sea level rise, food web alterations due to introduced species and other causes, and changes in sediment supply. Other options for reducing or mitigating exposure and risk include controlling bioaccumulation, cleanup of contaminated sites, and reducing other factors (e.g., habitat availability) that limit at-risk wildlife populations. Copyright © 2012 Elsevier Inc. All rights reserved.

Reducing methylmercury accumulation in the food webs of San Francisco Bay and its local watersheds

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, J.A., E-mail: jay@sfei.org; Looker, R.E.; Yee, D.

San Francisco Bay (California, USA) and its local watersheds present an interesting case study in estuarine mercury (Hg) contamination. This review focuses on the most promising avenues for attempting to reduce methylmercury (MeHg) contamination in Bay Area aquatic food webs and identifying the scientific information that is most urgently needed to support these efforts. Concern for human exposure to MeHg in the region has led to advisories for consumption of sport fish. Striped bass from the Bay have the highest average Hg concentration measured for this species in USA estuaries, and this degree of contamination has been constant for themore » past 40 years. Similarly, largemouth bass in some Bay Area reservoirs have some of the highest Hg concentrations observed in the entire US. Bay Area wildlife, particularly birds, face potential impacts to reproduction based on Hg concentrations in the tissues of several Bay species. Source control of Hg is one of the primary possible approaches for reducing MeHg accumulation in Bay Area aquatic food webs. Recent findings (particularly Hg isotope measurements) indicate that the decades-long residence time of particle-associated Hg in the Bay is sufficient to allow significant conversion of even the insoluble forms of Hg into MeHg. Past inputs have been thoroughly mixed throughout this shallow and dynamic estuary. The large pool of Hg already present in the ecosystem dominates the fraction converted to MeHg and accumulating in the food web. Consequently, decreasing external Hg inputs can be expected to reduce MeHg in the food web, but it will likely take many decades to centuries before those reductions are achieved. Extensive efforts to reduce loads from the largest Hg mining source (the historic New Almaden mining district) are underway. Hg is spread widely across the urban landscape, but there are a number of key sources, source areas, and pathways that provide opportunities to capture larger quantities of Hg and reduce loads from urban runoff. Atmospheric deposition is a lower priority for source control in the Bay Area due to a combination of a lack of major local sources. Internal net production of MeHg is the dominant source of MeHg that enters the food web. Controlling internal net production is the second primary management approach, and has the potential to reduce food web MeHg in some habitats more effectively and within a much shorter time-frame. Controlling net MeHg production and accumulation in the food web of upstream reservoirs and ponds is very promising due to the many features of these ecosystems that can be manipulated. The most feasible control options in tidal marshes relate to the design of flow patterns and subhabitats in restoration projects. Options for controlling MeHg production in open Bay habitat are limited due primarily to the highly dispersed distribution of Hg throughout the ecosystem. Other changes in these habitats may also have a large influence on food web MeHg, including temperature changes due to global warming, sea level rise, food web alterations due to introduced species and other causes, and changes in sediment supply. Other options for reducing or mitigating exposure and risk include controlling bioaccumulation, cleanup of contaminated sites, and reducing other factors (e.g., habitat availability) that limit at-risk wildlife populations.« less

Reducing Methylmercury Accumulation in the Food Webs of San Francisco Bay and Its Local Watersheds

PubMed Central

Davis, J.A.; Looker, R.E.; Yee, D.; Marvin-DiPasquale, M.; Grenier, J.L.; Austin, C.M.; McKee, L.J.; Greenfield, B.K.; Brodberg, R.; Blum, J.D.

2013-01-01

San Francisco Bay (California, USA) and its local watersheds present an interesting case study in estuarine mercury (Hg) contamination. This review focuses on the most promising avenues for attempting to reduce methylmercury (MeHg) contamination in Bay Area aquatic food webs and identifying the scientific information that is most urgently needed to support these efforts. Concern for human exposure to MeHg in the region has led to advisories for consumption of sport fish. Striped bass from the Bay have the highest average Hg concentration measured for this species in USA estuaries, and this degree of contamination has been constant for the past 40 years. Similarly, largemouth bass in some Bay Area reservoirs have some of the highest Hg concentrations observed in the entire US. Bay Area wildlife, particularly birds, face potential impacts to reproduction based on Hg concentrations in the tissues of several Bay species. Source control of Hg is one of the primary possible approaches for reducing MeHg accumulation in Bay Area aquatic food webs. Recent findings (particularly Hg isotope measurements) indicate that the decades-long residence time of particle-associated Hg in the Bay is sufficient to allow significant conversion of even the insoluble forms of Hg into MeHg. Past inputs have been thoroughly mixed throughout this shallow and dynamic estuary. The large pool of Hg already present in the ecosystem dominates the fraction converted to MeHg and accumulating in the food web. Consequently, decreasing external Hg inputs can be expected to reduce MeHg in the food web, but it will likely take many decades to centuries before those reductions are achieved. Extensive efforts to reduce loads from the largest Hg mining source (the historic New Almaden mining district) are underway. Hg is spread widely across the urban landscape, but there are a number of key sources, source areas, and pathways that provide opportunities to capture larger quantities of Hg and reduce loads from urban runoff. Atmospheric deposition is a lower priority for source control in the Bay Area due to a combination of a lack of major local sources and Hg isotope data indicating it is a secondary contributor to food web MeHg. Internal net production of MeHg is the dominant source of MeHg that enters the food web. Controlling internal net production is the second primary management approach, and has the potential to reduce food web MeHg more effectively and within a much shorter time-frame. MeHg cycling and control opportunities vary by habitat. Controlling net MeHg production and accumulation in the food web of upstream reservoirs and ponds is very promising due to the many features of these ecosystems that can be manipulated. The most feasible control options in tidal marshes relate to the design of flow patterns and subhabitats in restoration projects. Options for controlling MeHg production in open Bay habitat are limited due primarily to the highly dispersed distribution of Hg throughout the ecosystem. Other changes in these habitats may also have a large influence on food web MeHg, including temperature changes due to global warming, sea level rise, food web alterations due to introduced species and other causes, and changes in sediment supply. Other options for reducing or mitigating exposure and risk include controlling bioaccumulation, cleanup of contaminated sites, and reducing other factors (e.g., habitat availability) that limit at risk wildlife populations. PMID:23122771

Heterogeneous detection probabilities for imperiled Missouri River fishes: implications for large-river monitoring programs

USGS Publications Warehouse

Schloesser, J.T.; Paukert, Craig P.; Doyle, W.J.; Hill, Tracy D.; Steffensen, K.D.; Travnichek, Vincent H.

2012-01-01

Occupancy modeling was used to determine (1) if detection probabilities (p) for 7 regionally imperiled Missouri River fishes (Scaphirhynchus albus, Scaphirhynchus platorynchus, Cycleptus elongatus, Sander canadensis, Macrhybopsis aestivalis, Macrhybopsis gelida, and Macrhybopsis meeki) differed among gear types (i.e. stationary gill nets, drifted trammel nets, and otter trawls), and (2) how detection probabilities were affected by habitat (i.e. pool, bar, and open water), longitudinal position (five 189 to 367 rkm long segments), sampling year (2003 to 2006), and season (July 1 to October 30 and October 31 to June 30). Adult, large-bodied fishes were best detected with gill nets (p: 0.02–0.74), but most juvenile large-bodied and all small-bodied species were best detected with otter trawls (p: 0.02–0.58). Trammel nets may be a redundant sampling gear for imperiled fishes in the lower Missouri River because most species had greater detection probabilities with gill nets or otter trawls. Detection probabilities varied with river segment for S. platorynchus, C. elongatus, and all small-bodied fishes, suggesting that changes in habitat influenced gear efficiency or abundance changes among river segments. Detection probabilities varied by habitat for adult S. albus and S. canadensis, year for juvenile S. albus, C. elongatus, and S. canadensis, and season for adult S. albus. Concentrating sampling effort on gears with the greatest detection probabilities may increase species detections to better monitor a population's response to environmental change and the effects of management actions on large-river fishes.

Attribution of Net Carbon Change by Disturbance Type across Forest Lands of the Continental United States

NASA Astrophysics Data System (ADS)

Hagen, S. C.; Harris, N.; Saatchi, S. S.; Domke, G. M.; Woodall, C. W.; Pearson, T.

2016-12-01

We generated spatially comprehensive maps of carbon stocks and net carbon changes from US forestlands between 2005 and 2010 and attributed the changes to natural and anthropogenic processes. The prototype system created to produce these maps is designed to assist with national GHG inventories and support decisions associated with land management. Here, we present the results and methodological framework of our analysis. In summary, combining estimates of net C losses and gains results in net carbon change of 269±49 Tg C yr-1 (sink) in the coterminous US forest land, with carbon loss from harvest acting as the predominent source process.

Higher moments of multiplicity fluctuations in a hadron-resonance gas with exact conservation laws

NASA Astrophysics Data System (ADS)

Fu, Jing-Hua

2017-09-01

Higher moments of multiplicity fluctuations of hadrons produced in central nucleus-nucleus collisions are studied within the hadron-resonance gas model in the canonical ensemble. Exact conservation of three charges, baryon number, electric charge, and strangeness is enforced in the large volume limit. Moments up to the fourth order of various particles are calculated at CERN Super Proton Synchrotron, BNL Relativistic Heavy Ion Collider (RHIC), and CERN Large Hadron Collider energies. The asymptotic fluctuations within a simplified model with only one conserved charge in the canonical ensemble are discussed where simple analytical expressions for moments of multiplicity distributions can be obtained. Moments products of net-proton, net-kaon, and net-charge distributions in Au + Au collisions at RHIC energies are calculated. The pseudorapidity coverage dependence of net-charge fluctuation is discussed.

Improving timeliness and efficiency in the referral process for safety net providers: application of the Lean Six Sigma methodology.

PubMed

Deckard, Gloria J; Borkowski, Nancy; Diaz, Deisell; Sanchez, Carlos; Boisette, Serge A

2010-01-01

Designated primary care clinics largely serve low-income and uninsured patients who present a disproportionate number of chronic illnesses and face great difficulty in obtaining the medical care they need, particularly the access to specialty physicians. With limited capacity for providing specialty care, these primary care clinics generally refer patients to safety net hospitals' specialty ambulatory care clinics. A large public safety net health system successfully improved the effectiveness and efficiency of the specialty clinic referral process through application of Lean Six Sigma, an advanced process-improvement methodology and set of tools driven by statistics and engineering concepts.

Global distribution of alkyl nitrates and their impacts on reactive nitrogen in remote regions constrained by aircraft observations and chemical transport modeling

NASA Astrophysics Data System (ADS)

Fisher, J. A.; Atlas, E. L.; Blake, D. R.; Barletta, B.; Thompson, C. R.; Peischl, J.; Tzompa Sosa, Z. A.; Ryerson, T. B.; Murray, L. T.

2017-12-01

Nitrogen oxides (NO + NO­2 = NOx) are precursors in the formation of tropospheric ozone, contribute to the formation of aerosols, and enhance nitrogen deposition to ecosystems. While direct emissions tend to be localised over continental source regions, a significant source of NOx to the remote troposphere comes from degradation of other forms of reactive nitrogen. Long-lived, small chain alkyl nitrates (RONO2) including methyl, ethyl and propyl nitrates may be particularly significant forms of reactive nitrogen in the remote atmosphere as they are emitted directly by the ocean in regions where reactive nitrogen is otherwise very low. They also act as NOx reservoir species, sequestering NO­x in source regions and releasing it far downwind—and through this process may become increasingly important reservoirs as methane, ethane, and propane emissions grow. However, small RONO2 are not consistently included in global atmospheric chemistry models, and their distributions and impacts remain poorly constrained. In this presentation, we will describe a new RONO2 simulation in the GEOS-Chem chemical transport model evaluated using a large ensemble of aircraft observations collected over a 20-year period. The observations are largely concentrated over the Pacific Ocean, beginning with PEM-Tropics in the late 1990s and continuing through the recent HIPPO and ATom campaigns. Both observations and model show enhanced RONO2 in the tropical Pacific boundary layer that is consistent with a photochemical source in seawater. The model reproduces a similarly large enhancement over the southern ocean by assuming a large pool of oceanic RONO2 here, but the source of the seawater enhancement in this environment remains uncertain. We find that including marine RONO2 in the simulation is necessary to correct a large underestimate in simulated reactive nitrogen throughout the Pacific marine boundary layer. We also find that the impacts on NOx export from continental source regions are limited as RONO2 formation competes with other NO­x reservoirs such as PAN, leading to re-partitioning of reactive nitrogen rather than a net reactive nitrogen source. Further implications for NOx and ozone, as well as the impacts of recent changes in the global distribution of methane, ethane, propane, and NOx emissions, will also be discussed.

Tropical forests and the changing earth system.

PubMed

Lewis, Simon L

2006-01-29

Tropical forests are global epicentres of biodiversity and important modulators of the rate of climate change. Recent research on deforestation rates and ecological changes within intact forests, both areas of recent research and debate, are reviewed, and the implications for biodiversity (species loss) and climate change (via the global carbon cycle) addressed. Recent impacts have most likely been: (i) a large source of carbon to the atmosphere, and major loss of species, from deforestation and (ii) a large carbon sink within remaining intact forest, accompanied by accelerating forest dynamism and widespread biodiversity changes. Finally, I look to the future, suggesting that the current carbon sink in intact forests is unlikely to continue, and that the tropical forest biome may even become a large net source of carbon, via one or more of four plausible routes: changing photosynthesis and respiration rates, biodiversity changes in intact forest, widespread forest collapse via drought, and widespread forest collapse via fire. Each of these scenarios risks potentially dangerous positive feedbacks with the climate system that could dramatically accelerate and intensify climate change. Given that continued land-use change alone is already thought to be causing the sixth mass extinction event in Earth's history, should such feedbacks occur, the resulting biodiversity and societal consequences would be even more severe.

Air-sea Exchange of Polycyclic Aromatic Hydrocarbons (PAHs), Polychlorinated Biphenyls (PCBs), Organochlorine Pesticides (OCPs) and Polybrominated Diphenyl Ethers (PBDEs) in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Lammel, G. P.; Heil, A.; Kukucka, P.; Meixner, F. X.; Mulder, M. D.; Prybilova, P.; Prokes, R.; Rusina, T. S.; Song, G. Z.; Vrana, B.

2015-12-01

The marine atmospheric environment is a receptor for persistent organic pollutants (POPs) which are advected from sources on land, primary, such as biomass burning by-products (PAHs, dioxins), and secondary, such as volatilization from contaminated soils (PCBs, pesticides). Primary sources do not exist in the marine environment, except for PAHs (ship engines) but following previous atmospheric deposition, the sea surface may turn to a secondary source by reversal of diffusive air-sea mass exchange. No monitoring is in place. We studied the vertical fluxes of a wide range of primary and secondary emitted POPs based on measurements in air and surface seawater at a remote coastal site in the eastern Mediterranean (2012). To this end, silicon rubbers were used as passive water samplers, vertical concentration gradients were determined in air and fluxes were quantified based on Eddy covariance. Diffusive air-sea exchange fluxes of hexachlorocyclohexanes (HCHs) and semivolatile PAHs were found close to phase equilibrium, except one PAH, retene, a wood burning tracer, was found seasonally net-volatilisational. Some PCBs, p,p'-DDE, penta- and hexachlorobenzene (PeCB, HCB) were mostly net-depositional, while PBDEs were net-volatilizational. Fluxes determined at a a remote coastal site ranged -33 - +2.4 µg m-2 d-1 for PAHs and -4.0 - +0.3 µg m-2 d-1for halogenated compounds (< 0 means net-deposition, > 0 means net-volatilization). It is concluded that nowadays in open seas more pollutants are undergoing reversal of the direction of air-sea exchange. Recgional fire activity records in combination with box model simulations suggest that deposition of retene during summer is followed by a reversal of air-sea exchange. The seawater surface as secondary source of pollution should be assessed based on flux measurements across seasons and over longer time periods.

Modeling the grazing effect on dry grassland carbon cycling with modified Biome-BGC grazing model

NASA Astrophysics Data System (ADS)

Luo, Geping; Han, Qifei; Li, Chaofan; Yang, Liao

2014-05-01

Identifying the factors that determine the carbon source/sink strength of ecosystems is important for reducing uncertainty in the global carbon cycle. Arid grassland ecosystems are a widely distributed biome type in Xinjiang, Northwest China, covering approximately one-fourth the country's land surface. These grasslands are the habitat for many endemic and rare plant and animal species and are also used as pastoral land for livestock. Using the modified Biome-BGC grazing model, we modeled carbon dynamics in Xinjiang for grasslands that varied in grazing intensity. In general, this regional simulation estimated that the grassland ecosystems in Xinjiang acted as a net carbon source, with a value of 0.38 Pg C over the period 1979-2007. There were significant effects of grazing on carbon dynamics. An over-compensatory effect in net primary productivity (NPP) and vegetation carbon (C) stock was observed when grazing intensity was lower than 0.40 head/ha. Grazing resulted in a net carbon source of 23.45 g C m-2 yr-1, which equaled 0.37 Pg in Xinjiang in the last 29 years. In general, grazing decreased vegetation C stock, while an increasing trend was observed with low grazing intensity. The soil C increased significantly (17%) with long-term grazing, while the soil C stock exhibited a steady trend without grazing. These findings have implications for grassland ecosystem management as it relates to carbon sequestration and climate change mitigation, e.g., removal of grazing should be considered in strategies that aim to increase terrestrial carbon sequestrations at local and regional scales. One of the greatest limitations in quantifying the effects of herbivores on carbon cycling is identifying the grazing systems and intensities within a given region. We hope our study emphasizes the need for large-scale assessments of how grazing impacts carbon cycling. Most terrestrial ecosystems in Xinjiang have been affected by disturbances to a greater or lesser extent in the past several decades (e.g., land-use change, timber exploitation, and air pollution). However, regional evaluations that account for all of the local disturbances have been difficult. Data from field measurements play a pivotal role in comparing model simulations with observations.

The Seismic Tool-Kit (STK): An Open Source Software For Learning the Basis of Signal Processing and Seismology.

NASA Astrophysics Data System (ADS)

Reymond, D.

2016-12-01

We present an open source software project (GNU public license), named STK: Seismic Tool-Kit, that is dedicated mainly for learning signal processing and seismology. The STK project that started in 2007, is hosted by SourceForge.net, and count more than 20000 downloads at the date of writing.The STK project is composed of two main branches:First, a graphical interface dedicated to signal processing (in the SAC format (SAC_ASCII and SAC_BIN): where the signal can be plotted, zoomed, filtered, integrated, derivated, ... etc. (a large variety of IFR and FIR filter is proposed). The passage in the frequency domain via the Fourier transform is used to introduce the estimation of spectral density of the signal , with visualization of the Power Spectral Density (PSD) in linear or log scale, and also the evolutive time-frequency representation (or sonagram). The 3-components signals can be also processed for estimating their polarization properties, either for a given window, or either for evolutive windows along the time. This polarization analysis is useful for extracting the polarized noises, differentiating P waves, Rayleigh waves, Love waves, ... etc. Secondly, a panel of Utilities-Program are proposed for working in a terminal mode, with basic programs for computing azimuth and distance in spherical geometry, inter/auto-correlation, spectral density, time-frequency for an entire directory of signals, focal planes, and main components axis, radiation pattern of P waves, Polarization analysis of different waves (including noise), under/over-sampling the signals, cubic-spline smoothing, and linear/non linear regression analysis of data set. STK is developed in C/C++, mainly under Linux OS, and it has been also partially implemented under MS-Windows. STK has been used in some schools for viewing and plotting seismic records provided by IRIS, and it has been used as a practical support for teaching the basis of signal processing. Useful links:http://sourceforge.net/projects/seismic-toolkit/http://sourceforge.net/p/seismic-toolkit/wiki/browse_pages/

CAUSES: On the Role of Surface Energy Budget Errors to the Warm Surface Air Temperature Error Over the Central United States

DOE PAGES

Ma, H. -Y.; Klein, S. A.; Xie, S.; ...

2018-02-27

Many weather forecast and climate models simulate warm surface air temperature (T 2m) biases over midlatitude continents during the summertime, especially over the Great Plains. We present here one of a series of papers from a multimodel intercomparison project (CAUSES: Cloud Above the United States and Errors at the Surface), which aims to evaluate the role of cloud, radiation, and precipitation biases in contributing to the T 2m bias using a short-term hindcast approach during the spring and summer of 2011. Observations are mainly from the Atmospheric Radiation Measurement Southern Great Plains sites. The present study examines the contributions ofmore » surface energy budget errors. All participating models simulate too much net shortwave and longwave fluxes at the surface but with no consistent mean bias sign in turbulent fluxes over the Central United States and Southern Great Plains. Nevertheless, biases in the net shortwave and downward longwave fluxes as well as surface evaporative fraction (EF) are contributors to T 2m bias. Radiation biases are largely affected by cloud simulations, while EF bias is largely affected by soil moisture modulated by seasonal accumulated precipitation and evaporation. An approximate equation based upon the surface energy budget is derived to further quantify the magnitudes of radiation and EF contributions to T 2m bias. Our analysis ascribes that a large EF underestimate is the dominant source of error in all models with a large positive temperature bias, whereas an EF overestimate compensates for an excess of absorbed shortwave radiation in nearly all the models with the smallest temperature bias.« less

CAUSES: On the Role of Surface Energy Budget Errors to the Warm Surface Air Temperature Error Over the Central United States

NASA Astrophysics Data System (ADS)

Ma, H.-Y.; Klein, S. A.; Xie, S.; Zhang, C.; Tang, S.; Tang, Q.; Morcrette, C. J.; Van Weverberg, K.; Petch, J.; Ahlgrimm, M.; Berg, L. K.; Cheruy, F.; Cole, J.; Forbes, R.; Gustafson, W. I.; Huang, M.; Liu, Y.; Merryfield, W.; Qian, Y.; Roehrig, R.; Wang, Y.-C.

2018-03-01

Many weather forecast and climate models simulate warm surface air temperature (T2m) biases over midlatitude continents during the summertime, especially over the Great Plains. We present here one of a series of papers from a multimodel intercomparison project (CAUSES: Cloud Above the United States and Errors at the Surface), which aims to evaluate the role of cloud, radiation, and precipitation biases in contributing to the T2m bias using a short-term hindcast approach during the spring and summer of 2011. Observations are mainly from the Atmospheric Radiation Measurement Southern Great Plains sites. The present study examines the contributions of surface energy budget errors. All participating models simulate too much net shortwave and longwave fluxes at the surface but with no consistent mean bias sign in turbulent fluxes over the Central United States and Southern Great Plains. Nevertheless, biases in the net shortwave and downward longwave fluxes as well as surface evaporative fraction (EF) are contributors to T2m bias. Radiation biases are largely affected by cloud simulations, while EF bias is largely affected by soil moisture modulated by seasonal accumulated precipitation and evaporation. An approximate equation based upon the surface energy budget is derived to further quantify the magnitudes of radiation and EF contributions to T2m bias. Our analysis ascribes that a large EF underestimate is the dominant source of error in all models with a large positive temperature bias, whereas an EF overestimate compensates for an excess of absorbed shortwave radiation in nearly all the models with the smallest temperature bias.

CAUSES: On the Role of Surface Energy Budget Errors to the Warm Surface Air Temperature Error Over the Central United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma, H. -Y.; Klein, S. A.; Xie, S.

Many weather forecast and climate models simulate warm surface air temperature (T 2m) biases over midlatitude continents during the summertime, especially over the Great Plains. We present here one of a series of papers from a multimodel intercomparison project (CAUSES: Cloud Above the United States and Errors at the Surface), which aims to evaluate the role of cloud, radiation, and precipitation biases in contributing to the T 2m bias using a short-term hindcast approach during the spring and summer of 2011. Observations are mainly from the Atmospheric Radiation Measurement Southern Great Plains sites. The present study examines the contributions ofmore » surface energy budget errors. All participating models simulate too much net shortwave and longwave fluxes at the surface but with no consistent mean bias sign in turbulent fluxes over the Central United States and Southern Great Plains. Nevertheless, biases in the net shortwave and downward longwave fluxes as well as surface evaporative fraction (EF) are contributors to T 2m bias. Radiation biases are largely affected by cloud simulations, while EF bias is largely affected by soil moisture modulated by seasonal accumulated precipitation and evaporation. An approximate equation based upon the surface energy budget is derived to further quantify the magnitudes of radiation and EF contributions to T 2m bias. Our analysis ascribes that a large EF underestimate is the dominant source of error in all models with a large positive temperature bias, whereas an EF overestimate compensates for an excess of absorbed shortwave radiation in nearly all the models with the smallest temperature bias.« less

An electronic consumer health library: NetWellness.

PubMed Central

Guard, R; Haag, D; Kaya, B; Marine, S; Morris, T; Schick, L; Shoemaker, S

1996-01-01

NetWellness is a community-based, consumer-defined grant program supporting the delivery of electronic health information to rural residents of southern Ohio and urban and suburban communities in the Greater Cincinnati tri-state region. NetWellness is a collaboratively developed and publicly and privately funded demonstration project. Information is delivered via ISDN, standard dial, dedicated network connections, and the Internet. TriState Online (Greater Cincinnati's Free-Net) and other southern Ohio Free-Nets are key access points in the larger project communities. The other access points are more than forty workstations distributed at public sites throughout the project's primary geographical area. Design strengths and limitations, training initiatives, technical issues, and the project's impact on medical librarianship are examined in this paper. Also discussed are ways of determining community needs and interest, building political alliances, finding and developing funding sources, and overcoming technical obstacles. NetWellness's Internet address is: http:@www.netwellness.org. PMID:8913548

Greenhouse Gas and Carbon Profile of the U.S. Forest Products Industry Value Chain

PubMed Central

2010-01-01

A greenhouse gas and carbon accounting profile was developed for the U.S. forest products industry value chain for 1990 and 2004−2005 by examining net atmospheric fluxes of CO2 and other greenhouse gases (GHGs) using a variety of methods and data sources. Major GHG emission sources include direct and indirect (from purchased electricity generation) emissions from manufacturing and methane emissions from landfilled products. Forest carbon stocks in forests supplying wood to the industry were found to be stable or increasing. Increases in the annual amounts of carbon removed from the atmosphere and stored in forest products offset about half of the total value chain emissions. Overall net transfers to the atmosphere totaled 91.8 and 103.5 TgCO2-eq. in 1990 and 2005, respectively, although the difference between these net transfers may not be statistically significant. Net transfers were higher in 2005 primarily because additions to carbon stored in forest products were less in 2005. Over this same period, energy-related manufacturing emissions decreased by almost 9% even though forest products output increased by approximately 15%. Several types of avoided emissions were considered separately and were collectively found to be notable relative to net emissions. PMID:20355695

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jorgenson, Jennie; Mehos, Mark; Denholm, Paul

Concentrated solar power with thermal energy storage (CSP-TES) is a unique source of renewable energy in that its energy can be shifted over time and it can provide the electricity system with dependable generation capacity. In this study, we provide a framework to determine if the benefits of CSP-TES (shiftable energy and the ability to provide firm capacity) exceed the benefits of PV and firm capacity sources such as long-duration battery storage or conventional natural gas combustion turbines (CTs). The results of this study using current capital cost estimates indicate that a combination of PV and conventional gas CTs providesmore » a lower net cost compared to CSP-TES and PV with batteries. Some configurations of CSP-TES have a lower net cost than PV with batteries for even the lowest battery cost estimate. Using projected capital cost targets, however, some configurations of CSP-TES have a lower net cost than PV with either option for even the lowest battery cost estimate. The net cost of CSP-TES varies with configuration, and lower solar multiples coupled with less storage are more attractive at current cost levels, due to high component costs. However, higher solar multiples show a lower net cost using projected future costs for heliostats and thermal storage materials.« less

Estimating the Temporal Domain when the Discount of the Net Evaporation Term Affects the Resulting Net Precipitation Pattern in the Moisture Budget Using a 3-D Lagrangian Approach

PubMed Central

Castillo, Rodrigo; Nieto, Raquel; Drumond, Anita; Gimeno, Luis

2014-01-01

The Lagrangian FLEXPART model has been used during the last decade to detect moisture sources that affect the climate in different regions of the world. While most of these studies provided a climatological perspective on the atmospheric branch of the hydrological cycle in terms of precipitation, none assessed the minimum temporal domain for which the climatological approach is valid. The methodology identifies the contribution of humidity to the moisture budget in a region by computing the changes in specific humidity along backward (or forward) trajectories of air masses over a period of ten days beforehand (afterwards), thereby allowing the calculation of monthly, seasonal and annual averages. The current study calculates as an example the climatological seasonal mean and variance of the net precipitation for regions in which precipitation exceeds evaporation (E-P<0) for the North Atlantic moisture source region using different time periods, for winter and summer from 1980 to 2000. The results show that net evaporation (E-P>0) can be discounted after when the integration of E-P is done without affecting the general net precipitation patterns when it is discounted in a monthly or longer time scale. PMID:24893002

The New Tools of the Trade: 48 Essential Net Resources for Librarians.

ERIC Educational Resources Information Center

Todaro, Julie

1996-01-01

Describes 48 Web sites, listservs, and search engines for librarians serving children and youth in the following categories: professional topics; networking opportunities; literature; libraries; the "Net"; education and general resources; and resources on children and youth. Lists 11 ways to use the internet as a source of professional…

Green Net Regional Product for the San Luis Basin, Colorado: An Economic Measure of Regional Sustainability

EPA Science Inventory

This paper presents the data sources and methodology used to estimate Green Net Regional Product (GNRP), a green accounting approach, for the San Luis Basin (SLB). GNRP is equal to aggregate consumption minus the depreciation of man-made and natural capital. We measure the move...

MASTER Net: optical transients detection

NASA Astrophysics Data System (ADS)

Pogrosheva, T.; Gress, O.; Vladimirov, V.; Lipunov, V.; Rebolo, R.; Serra-Ricart, M.; Podesta, R.; Podesta, F.; Francile, C.; Levato, H.; Saffe, C.; Gorbovskoy, E.; Tiurina, N.; Kornilov, V.; Balanutsa, P.; Kuznetsov, A.; Gorbunov, I.; Zimnukhov, D.; Chazov, V.; Vlasenko, D.; Shumkov, V.; Senik, V.; Kuvshinov, D.; Gabovich, A.; Yurkov, V.

2018-05-01

MASTER-OAFA auto-detection system ( Lipunov et al., "MASTER Global Robotic Net",Advances in Astronomy, 2010, 30L ) discovered OT source at (RA, Dec) = 17h 01m 47.31s +05d 45m 40.1s on 2018-05-06.23063 UT. The OT unfiltered magnitude is 17.4m (mlim=18.0m).

Estimating Green Net National Product for Puerto Rico: An Economic Measure of Sustainability (Journal article)

EPA Science Inventory

This paper presents the data sources and methodology used to estimate Green Net National Product (GNNP), an economic metric of sustainability, for Puerto Rico. Using the change in GNNP as a one-sided test of weak sustainability (i.e., positive growth in GNNP is not enough to show...

CAMUS: Automatically Mapping Cyber Assets to Mission and Users (PREPRINT)

DTIC Science & Technology

2009-10-01

which machines regularly use a particular mail server. Armed with these basic data sources – LDAP, NetFlow traffic and user logs – fuselets were created... NetFlow traffic used in the demonstration has over ten thousand unique IP Addresses and is over one gigabyte in size. A number of high performance

Impact of seasonality on the nutrient concentrations in Gautami-Godavari Estuarine Mangrove Complex, Andhra Pradesh, India.

PubMed

Rao, Karuna; Priya, Namrata; Ramanathan, A L

2018-04-01

Spatiotemporal variations of dissolved nutrients were studied along Gautami-Godavari mangrove ecosystem to delineate their sources and fate. Average values of nitrate (NO 3 - ), dissolved silica (DSi) and phosphate (PO 4 3- ) is 2.09 mg/l, 12.7 mg/l and 0.16 mg/l in wet season and 0.47 mg/l, 6.96 mg/l and 0.29 mg/l in dry season respectively. In wet season river discharge has significant influence on NO 3 - and DSi. In dry season, NO 3 - and PO 4 3- are controlled by groundwater discharge, benthic exchange and various in situ processes owing to sediment redox condition. Mixing model shows net addition of phosphate in Coringa mangroves (95%) and Lower estuary (13%) and net removal of nitrate (24.79%) in Coringa mangrove and in estuary (58.9%). Thus present mangrove acts as net source for phosphate and net sink for nitrate and DSi. Nutrient ratio shows seasonal switching between potential Phosphorus and Nitrogen limitation in wet and dry season respectively. Copyright © 2018 Elsevier Ltd. All rights reserved.

Organochlorine pesticides in soils of Mexico and the potential for soil-air exchange.

PubMed

Wong, Fiona; Alegria, Henry A; Bidleman, Terry F

2010-03-01

The spatial distribution of organochlorine pesticides (OCs) in soils and their potential for soil-air exchange was examined. The most prominent OCs were the DDTs (Geometric Mean, GM=1.6 ng g(-1)), endosulfans (0.16 ng g(-1)), and toxaphenes (0.64 ng g(-1)). DDTs in soils of southern Mexico showed fresher signatures with higher FDDTe=p,p'-DDT/(p,p'-DDT+p,p'-DDE) and more racemic o,p'-DDT, while the signatures in the central and northern part of Mexico were more indicative of aged residues. Soil-air fugacity fractions showed that some soils are net recipients of DDTs from the atmosphere, while other soils are net sources. Toxaphene profiles in soils and air showed depletion of Parlar 39 and 42 which suggests that soil is the source to the atmosphere. Endosulfan was undergoing net deposition at most sites as it is a currently used pesticide. Other OCs showed wide variability in fugacity, suggesting a mix of net deposition and volatilization. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

Is Forest Ground and Soil a Net Source or Sink for HONO?

NASA Astrophysics Data System (ADS)

Kim, T.; Kim, K.; Zhou, X.

2017-12-01

Ambient measurements and chamber experiments were conducted at the PROPHET site during the PROPHET-AMOS 2016 field campaign, to investigate the exchange of nitrous acid (HONO) between the forest ground and the atmosphere. HONO concentrations measured at 1.3 m and 10 cm above the ground surface consistently showed positive gradients with height, suggesting that the ground surface was a net sink for HONO. The HONO concentration gradients were significantly more pronounced during rainy and foggy periods than during dry periods, indicating an enhancement of HONO deposition onto the wet ground surface. Significant loss of HONO from the gas phase to the ground surface in an open-bottom chamber supports the argument that forest ground is a net HONO sink via deposition. Despite the ground surface was not a net HONO source, HONO was found to accumulate in the atmosphere within the forest canopy during the first half of the night. Heterogeneous reactions of NO2 on the surfaces of tree trunks and branches is proposed to be responsible for the observed nighttime HONO production.

QUAL-NET, a high temporal-resolution eutrophication model for large hydrographic networks

NASA Astrophysics Data System (ADS)

Minaudo, Camille; Curie, Florence; Jullian, Yann; Gassama, Nathalie; Moatar, Florentina

2018-04-01

To allow climate change impact assessment of water quality in river systems, the scientific community lacks efficient deterministic models able to simulate hydrological and biogeochemical processes in drainage networks at the regional scale, with high temporal resolution and water temperature explicitly determined. The model QUALity-NETwork (QUAL-NET) was developed and tested on the Middle Loire River Corridor, a sub-catchment of the Loire River in France, prone to eutrophication. Hourly variations computed efficiently by the model helped disentangle the complex interactions existing between hydrological and biological processes across different timescales. Phosphorus (P) availability was the most constraining factor for phytoplankton development in the Loire River, but simulating bacterial dynamics in QUAL-NET surprisingly evidenced large amounts of organic matter recycled within the water column through the microbial loop, which delivered significant fluxes of available P and enhanced phytoplankton growth. This explained why severe blooms still occur in the Loire River despite large P input reductions since 1990. QUAL-NET could be used to study past evolutions or predict future trajectories under climate change and land use scenarios.

Microbial production of volatile sulphur compounds in the large intestine of pigs fed two different diets.

PubMed

Poulsen, H V; Jensen, B B; Finster, K; Spence, C; Whitehead, T R; Cotta, M A; Canibe, N

2012-07-01

  To investigate the production of volatile sulphur compounds (VSC) in the segments of the large intestine of pigs and to assess the impact of diet on this production.   Pigs were fed two diets based on either wheat and barley (STD) or wheat and dried distillers grains with solubles (DDGS). Net production of VSC and potential sulphate reduction rate (SRR) (sulphate saturated) along the large intestine were determined by means of in vitro incubations. The net production rate of hydrogen sulphide and potential SRR increased from caecum towards distal colon and were significantly higher in the STD group. Conversely, the net methanethiol production rate was significantly higher in the DDGS group, while no difference was observed for dimethyl sulphide. The number of sulphate-reducing bacteria and total bacteria were determined by quantitative PCR and showed a significant increase along the large intestine, whereas no diet-related differences were observed.   VSC net production varies widely throughout the large intestine of pigs and the microbial processes involved in this production can be affected by diet.   This first report on intestinal production of all VSC shows both spatial and dietary effects, which are relevant to both bowel disease- and odour mitigation research. © 2012 The Authors. Journal of Applied Microbiology © 2012 The Society for Applied Microbiology.

Technology transfer in software engineering

NASA Technical Reports Server (NTRS)

Bishop, Peter C.

1989-01-01

The University of Houston-Clear Lake is the prime contractor for the AdaNET Research Project under the direction of NASA Johnson Space Center. AdaNET was established to promote the principles of software engineering to the software development industry. AdaNET will contain not only environments and tools, but also concepts, principles, models, standards, guidelines and practices. Initially, AdaNET will serve clients from the U.S. government and private industry who are working in software development. It will seek new clients from those who have not yet adopted the principles and practices of software engineering. Some of the goals of AdaNET are to become known as an objective, authoritative source of new software engineering information and parts, to provide easy access to information and parts, and to keep abreast of innovations in the field.

Application of a rule-based model to estimate mercury exchange for three background biomes in the continental United States

USGS Publications Warehouse

Hartman, J.S.; Weisberg, P.J.; Pillai, R.; Ericksen, J.A.; Kuiken, T.; Lindberg, S.E.; Zhang, H.; Rytuba, J.J.; Gustin, M.S.

2009-01-01

Ecosystems that have low mercury (Hg) concentrations (i.e., not enriched or impactedbygeologic or anthropogenic processes) cover most of the terrestrial surface area of the earth yet their role as a net source or sink for atmospheric Hg is uncertain. Here we use empirical data to develop a rule-based model implemented within a geographic information system framework to estimate the spatial and temporal patterns of Hg flux for semiarid deserts, grasslands, and deciduous forests representing 45% of the continental United States. This exercise provides an indication of whether these ecosystems are a net source or sink for atmospheric Hg as well as a basis for recommendation of data to collect in future field sampling campaigns. Results indicated that soil alone was a small net source of atmospheric Hg and that emitted Hg could be accounted for based on Hg input by wet deposition. When foliar assimilation and wet deposition are added to the area estimate of soil Hg flux these biomes are a sink for atmospheric Hg. ?? 2009 American Chemical Society.

On the potential of Cherenkov Telescope Arrays and KM3 Neutrino Telescopes for the detection of extended sources

NASA Astrophysics Data System (ADS)

Ambrogi, L.; Celli, S.; Aharonian, F.

2018-07-01

We discuss the discovery potential of extended Very-High-Energy (VHE) neutrino sources by the future KM3 Neutrino Telescope (KM3NeT) in the context of the constraining power of the Cherenkov Telescope Array (CTA), designed for deep surveys of the sky in VHE gamma rays. The study is based on a comparative analysis of sensitivities of KM3NeT and CTA. We show that a minimum gamma-ray energy flux of E2ϕγ(10TeV) > 1 ×10-12 TeV cm-2 s-1 is required to identify a possible neutrino counterpart with a 3σ significance and 10 years of KM3NeT observations with upgoing muons, if the source has an angular size of Rsrc = 0 .1∘ and emits gamma rays with an E-2 energy spectrum through a full hadronic mechanism. This minimum gamma-ray flux is increased to the level of E2ϕγ(10TeV) > 2 ×10-11 TeV cm-2 s-1 in case of sources with radial extension of Rsrc = 2 .0∘ . The analysis methods are applied to the supernova remnant RX J1713.7-3946 and the Galactic Center Ridge, as well as to the recent HAWC catalog of multi-TeV gamma-ray sources.

Xray: N-dimensional, labeled arrays for analyzing physical datasets in Python

NASA Astrophysics Data System (ADS)

Hoyer, S.

2015-12-01

Efficient analysis of geophysical datasets requires tools that both preserve and utilize metadata, and that transparently scale to process large datas. Xray is such a tool, in the form of an open source Python library for analyzing the labeled, multi-dimensional array (tensor) datasets that are ubiquitous in the Earth sciences. Xray's approach pairs Python data structures based on the data model of the netCDF file format with the proven design and user interface of pandas, the popular Python data analysis library for labeled tabular data. On top of the NumPy array, xray adds labeled dimensions (e.g., "time") and coordinate values (e.g., "2015-04-10"), which it uses to enable a host of operations powered by these labels: selection, aggregation, alignment, broadcasting, split-apply-combine, interoperability with pandas and serialization to netCDF/HDF5. Many of these operations are enabled by xray's tight integration with pandas. Finally, to allow for easy parallelism and to enable its labeled data operations to scale to datasets that does not fit into memory, xray integrates with the parallel processing library dask.

Ocean urea fertilization for carbon credits poses high ecological risks.

PubMed

Glibert, Patricia M; Azanza, Rhodora; Burford, Michele; Furuya, Ken; Abal, Eva; Al-Azri, Adnan; Al-Yamani, Faiza; Andersen, Per; Anderson, Donald M; Beardall, John; Berg, G Mine; Brand, Larry; Bronk, Deborah; Brookes, Justin; Burkholder, Joann M; Cembella, Allan; Cochlan, William P; Collier, Jackie L; Collos, Yves; Diaz, Robert; Doblin, Martina; Drennen, Thomas; Dyhrman, Sonya; Fukuyo, Yasuwo; Furnas, Miles; Galloway, James; Granéli, Edna; Ha, Dao Viet; Hallegraeff, Gustaaf; Harrison, John; Harrison, Paul J; Heil, Cynthia A; Heimann, Kirsten; Howarth, Robert; Jauzein, Cécile; Kana, Austin A; Kana, Todd M; Kim, Hakgyoon; Kudela, Raphael; Legrand, Catherine; Mallin, Michael; Mulholland, Margaret; Murray, Shauna; O'Neil, Judith; Pitcher, Grant; Qi, Yuzao; Rabalais, Nancy; Raine, Robin; Seitzinger, Sybil; Salomon, Paulo S; Solomon, Caroline; Stoecker, Diane K; Usup, Gires; Wilson, Joanne; Yin, Kedong; Zhou, Mingjiang; Zhu, Mingyuan

2008-06-01

The proposed plan for enrichment of the Sulu Sea, Philippines, a region of rich marine biodiversity, with thousands of tonnes of urea in order to stimulate algal blooms and sequester carbon is flawed for multiple reasons. Urea is preferentially used as a nitrogen source by some cyanobacteria and dinoflagellates, many of which are neutrally or positively buoyant. Biological pumps to the deep sea are classically leaky, and the inefficient burial of new biomass makes the estimation of a net loss of carbon from the atmosphere questionable at best. The potential for growth of toxic dinoflagellates is also high, as many grow well on urea and some even increase their toxicity when grown on urea. Many toxic dinoflagellates form cysts which can settle to the sediment and germinate in subsequent years, forming new blooms even without further fertilization. If large-scale blooms do occur, it is likely that they will contribute to hypoxia in the bottom waters upon decomposition. Lastly, urea production requires fossil fuel usage, further limiting the potential for net carbon sequestration. The environmental and economic impacts are potentially great and need to be rigorously assessed.

Ocean Urea Fertilization for Carbon Credits Poses High Ecological Risks

PubMed Central

Glibert, Patricia M.; Azanza, Rhodora; Burford, Michele; Furuya, Ken; Abal, Eva; Al-Azri, Adnan; Al-Yamani, Faiza; Andersen, Per; Beardall, John; Berg, G. Mine; Brand, Larry; Bronk, Deborah; Brookes, Justin; Burkholder, JoAnn M.; Cembella, Allan; Cochlan, William P.; Collier, Jackie; Collos, Yves; Diaz, Robert; Doblin, Martina; Drennen, Thomas; Dyhrman, Sonya; Fukuyo, Yasuwo; Furnas, Miles; Galloway, James; Granéli, Edna; Ha, Dao Viet; Hallegraeff, Gustaaf; Harrison, John; Harrison, Paul J.; Heil, Cynthia A.; Heimann, Kirsten; Howarth, Robert; Jauzein, Cécile; Kana, Austin A.; Kana, Todd M.; Kim, Hakgyoon; Kudela, Raphael; Legrand, Catherine; Mallin, Michael; Mulholland, Margaret; Murray, Shauna; O’Neil, Judith; Pitcher, Grant; Qi, Yuzao; Rabalais, Nancy; Raine, Robin; Seitzinger, Sybil; Solomon, Caroline; Stoecker, Diane K.; Usup, Gires; Wilson, Joanne; Yin, Kedong; Zhou, Mingjiang; Zhu, Mingyuan

2017-01-01

The proposed plan for enrichment of the Sulu Sea, Philippines, a region of rich marine biodiversity, with thousands of tonnes of urea in order to stimulate algal blooms and sequester carbon is flawed for multiple reasons. Urea is preferentially used as a nitrogen source by some cyanobacteria and dinoflagellates, many of which are neutrally or positively buoyant. Biological pumps to the deep sea are classically leaky, and the inefficient burial of new biomass makes the estimation of a net loss of carbon from the atmosphere questionable at best. The potential for growth of toxic dinoflagellates is also high, as many grow well on urea and some even increase their toxicity when grown on urea. Many toxic dinoflagellates form cysts which can settle to the sediment and germinate in subsequent years, forming new blooms even without further fertilization. If large-scale blooms do occur, it is likely that they will contribute to hypoxia in the bottom waters upon decomposition. Lastly, urea production requires fossil fuel usage, further limiting the potential for net carbon sequestration. The environmental and economic impacts are potentially great and need to be rigorously assessed. PMID:18439628

Temporal evolution of carbon budgets of the Appalachian forests in the U.S. from 1972 to 2000

USGS Publications Warehouse

Liu, J.; Liu, S.; Loveland, Thomas R.

2006-01-01

Estimating dynamic terrestrial ecosystem carbon (C) sources and sinks over large areas is difficult. The scaling of C sources and sinks from the field level to the regional level has been challenging due to the variations of climate, soil, vegetation, and disturbances. As part of an effort to estimate the spatial, temporal, and sectional dimensions of the United States C sources and sinks (the U.S. Carbon Trends Project), this study estimated the forest ecosystem C sequestration of the Appalachian region (186,000 km2) for the period of 1972–2000 using the General Ensemble Biogeochemical Modeling System (GEMS) that has a strong capability of assimilating land use and land cover change (LUCC) data. On 82 sampling blocks in the Appalachian region, GEMS used sequential 60 m resolution land cover change maps to capture forest stand-replacing events and used forest inventory data to estimate non-stand-replacing changes. GEMS also used Monte Carlo approaches to deal with spatial scaling issues such as initialization of forest age and soil properties. Ensemble simulations were performed to incorporate the uncertainties of input data. Simulated results show that from 1972 to 2000 the net primary productivity (NPP), net ecosystem productivity (NEP), and net biome productivity (NBP) averaged 6.2 Mg C ha−1 y−1 (±1.1), 2.2 Mg C ha−1 y−1 (±0.6), and 1.8 Mg C ha−1 y−1(±0.6), respectively. The inter-annual variability was driven mostly by climate. Detailed C budgets for the year 2000 were also calculated. Within a total 148,000 km2 forested area, average forest ecosystem C density was estimated to be 186 Mg C ha−1 (±20), of which 98 Mg C ha−1 (±12) was in biomass and 88 Mg C ha−1 (±13) was in litter and soil. The total simulated C stock of the Appalachian forests was estimated to be 2751 Tg C (±296), including 1454 Tg C (±178) in living biomass and 1297 Tg C (±192) in litter and soil. The total net C sequestration (i.e. NBP) of the forest ecosystem in 2000 was estimated to be 19.5 Tg C y−1 (±6.8).

Preliminary Analysis of the Hydrologic and Geochemical Controls on Acid-Neutralizing Capacity in Two Acidic Seepage Lakes in Florida

NASA Astrophysics Data System (ADS)

Pollman, Curtis D.; Lee, T. M.; Andrews, W. J.; Sacks, L. A.; Gherini, S. A.; Munson, R. K.

1991-09-01

In late 1988, parallel studies of Lake Five-O (pH 5.14) in the Florida panhandle and Lake Barco (pH 4.50) in north central Florida were initiated to develop hydrologic and major ion budgets of these lakes as part of an overall effort to improve understanding of the hydrologic, depositional, and biogeochemical factors that control acid-neutralizing capacity (ANC) in seepage lakes. Preliminary findings from these studies indicate that earlier perceptions of lake hydrology and mechanisms of ANC regulation in Florida seepage lakes may have to be revised. The traditional perspective of seepage lakes in the Florida panhandle views these systems as dominated by precipitation inputs and that ANC regulation is due largely to in-lake processes. Our results for Lake Five-O show modest to steep hydraulic gradients almost entirely around the lake. In addition, the horizontal hydraulic conductivity of the surficial aquifer is high (8-74 m day-1), indicating that large quantities of groundwater flow into Lake Five-O. Calculations of net groundwater flow from hydrologic budgets also indicate that groundwater may comprise at least 38 to 46% of the total inflow. For Lake Barco, net flow estimates of the minimum groundwater inflow range from 5 to 14% of total inflow. Enrichment factor and ion flux calculations for Lake Five-O and Lake Barco indicate that terrestrial as well as in-lake processes contribute significantly to ANC regulation. The extent that terrestrial processes contribute to ANC generation is directly related to the magnitude of groundwater inflow as well as the degree of ion enrichment or depletion that occurs in the surficial aquifer. Net ANC generation in both study lakes was dominated by anion retention (NO3- and SO42-). Where previous studies concluded that in-lake reduction was the primary sink for SO42-, our preliminary calculations show that adsorption of SO42- within the watershed is perhaps twice as important as in-lake reduction as a source of ANC. Net base cation enrichment in both lakes was negligible.

Global Patterns in Human Consumption of Net Primary Production

NASA Technical Reports Server (NTRS)

Imhoff, Marc L.; Bounoua, Lahouari; Ricketts, Taylor; Loucks, Colby; Harriss, Robert; Lawrence William T.

2004-01-01

The human population and its consumption profoundly affect the Earth's ecosystems. A particularly compelling measure of humanity's cumulative impact is the fraction of the planet's net primary production that we appropriate for our Net primary production-the net amount of solar energy converted to plant organic matter through photosynthesis-can be measured in units of elemental carbon and represents the primary food energy source for the world's ecosystems. Human appropriation of net primary production, apart from leaving less for other species to use, alters the composition of the atmosphere, levels of biodiversity, flows within food webs and the provision of important primary production required by humans and compare it to the total amount generated on the landscape. We then derive a spatial ba!mce sheet of net primary production supply and demand for the world. We show that human appropriation of net primary production varies spatially from almost zero to many times the local primary production. These analyses reveal the uneven footprint of human consumption and related environmental impacts, indicate the degree to which human populations depend on net primary production "imports" and suggest policy options for slowing future growth of human appropriation of net primary production.

Studies in the extensively automatic construction of large odds-based inference networks from structured data. Examples from medical, bioinformatics, and health insurance claims data.

PubMed

Robson, B; Boray, S

2018-04-01

Theoretical and methodological principles are presented for the construction of very large inference nets for odds calculations, composed of hundreds or many thousands or more of elements, in this paper generated by structured data mining. It is argued that the usual small inference nets can sometimes represent rather simple, arbitrary estimates. Examples of applications in clinical and public health data analysis, medical claims data and detection of irregular entries, and bioinformatics data, are presented. Construction of large nets benefits from application of a theory of expected information for sparse data and the Dirac notation and algebra. The extent to which these are important here is briefly discussed. Purposes of the study include (a) exploration of the properties of large inference nets and a perturbation and tacit conditionality models, (b) using these to propose simpler models including one that a physician could use routinely, analogous to a "risk score", (c) examination of the merit of describing optimal performance in a single measure that combines accuracy, specificity, and sensitivity in place of a ROC curve, and (d) relationship to methods for detecting anomalous and potentially fraudulent data. Copyright © 2018 Elsevier Ltd. All rights reserved.

An interactive environment for the analysis of large Earth observation and model data sets

NASA Technical Reports Server (NTRS)

Bowman, Kenneth P.; Walsh, John E.; Wilhelmson, Robert B.

1994-01-01

Envision is an interactive environment that provides researchers in the earth sciences convenient ways to manage, browse, and visualize large observed or model data sets. Its main features are support for the netCDF and HDF file formats, an easy to use X/Motif user interface, a client-server configuration, and portability to many UNIX workstations. The Envision package also provides new ways to view and change metadata in a set of data files. It permits a scientist to conveniently and efficiently manage large data sets consisting of many data files. It also provides links to popular visualization tools so that data can be quickly browsed. Envision is a public domain package, freely available to the scientific community. Envision software (binaries and source code) and documentation can be obtained from either of these servers: ftp://vista.atmos.uiuc.edu/pub/envision/ and ftp://csrp.tamu.edu/pub/envision/. Detailed descriptions of Envision capabilities and operations can be found in the User's Guide and Reference Manuals distributed with Envision software.

Decision net, directed graph, and neural net processing of imaging spectrometer data

NASA Technical Reports Server (NTRS)

Casasent, David; Liu, Shiaw-Dong; Yoneyama, Hideyuki; Barnard, Etienne

1989-01-01

A decision-net solution involving a novel hierarchical classifier and a set of multiple directed graphs, as well as a neural-net solution, are respectively presented for large-class problem and mixture problem treatments of imaging spectrometer data. The clustering method for hierarchical classifier design, when used with multiple directed graphs, yields an efficient decision net. New directed-graph rules for reducing local maxima as well as the number of perturbations required, and the new starting-node rules for extending the reachability and reducing the search time of the graphs, are noted to yield superior results, as indicated by an illustrative 500-class imaging spectrometer problem.

Inversion of very large matrices encountered in large scale problems of photogrammetry and photographic astrometry

NASA Technical Reports Server (NTRS)

Brown, D. C.

1971-01-01

The simultaneous adjustment of very large nets of overlapping plates covering the celestial sphere becomes computationally feasible by virtue of a twofold process that generates a system of normal equations having a bordered-banded coefficient matrix, and solves such a system in a highly efficient manner. Numerical results suggest that when a well constructed spherical net is subjected to a rigorous, simultaneous adjustment, the exercise of independently established control points is neither required for determinancy nor for production of accurate results.

Decadal trends in net ecosystem production and net ecosystem carbon balance for a regional socioecological system

Treesearch

David P. Turner; William D. Ritts; Zhiqiang Yang; Robert E. Kennedy; Warren B. Cohen; Maureen V. Duane; Peter E. Thornton; Beverly E. Law

2011-01-01

Carbon sequestration is increasingly recognized as an ecosystem service, and forest management has a large potential to alter regional carbon fluxes, notably by way of harvest removals and related impacts on net ecosystem production (NEP). In the Pacific Northwest region of the US, the implementation of the Northwest Forest Plan (NWFP) in 1993 established a regional...

Biogeochemical Trends and Their Ecosystem Impacts in Atlantic Canada

NASA Astrophysics Data System (ADS)

Fennel, Katja; Rutherford, Krysten; Kuhn, Angela; Zhang, Wenxia; Brennan, Katie; Zhang, Rui

2017-04-01

The representation of coastal oceans in global biogeochemical models is a challenge, yet the ecosystems in these regions are most vulnerable to the combined stressors of ocean warming, deoxygenation, acidification, eutrophication and fishing. Coastal regions also have large air-sea fluxes of CO2, making them an important but poorly quantified component of the global carbon cycle, and are the most relevant for human activities. Regional model applications that are nested within large-scale or global models are necessary for detailed studies of coastal regions. We present results from such a regional biogeochemical model for the northwestern North Atlantic shelves and adjacent deep ocean of Atlantic Canada. The model is an implementation of the Regional Ocean Modeling System (ROMS) and includes an NPZD-type nitrogen cycle model with explicit representation of dissolved oxygen and inorganic carbon. The region is at the confluence of the Gulf Stream and Labrador Current making it highly dynamic, a challenge for analysis and prediction, and prone to large changes. Historically a rich fishing ground, coastal ecosystems in Atlantic Canada have undergone dramatic changes including the collapse of several economically important fish stocks and the listing of many species as threatened or endangered. Furthermore it is unclear whether the region is a net source or sink of atmospheric CO2 with estimates of the size and direction of the net air-sea CO2 flux remaining controversial. We will discuss simulated patterns of primary production, inorganic carbon fluxes and oxygen trends in the context of circulation features and shelf residence times for the present ocean state and present future projections.

SPECS: Orbital debris removal

NASA Technical Reports Server (NTRS)

1991-01-01

The debris problem has reached a stage at which the risk to satellites and spacecraft has become substantial in low Earth orbit (LEO). This research discovered that small particles posed little threat to spacecraft because shielding can effectively prevent these particles from damaging the spacecraft. The research also showed that, even though collision with a large piece of debris could destroy the spacecraft, the large pieces of debris pose little danger because they can be tracked and the spacecraft can be maneuvered away from these pieces. Additionally, there are many current designs to capture and remove large debris particles from the space environment. From this analysis, it was decided to concentrate on the removal of medium-sized orbital debris, that is, those pieces ranging from 1 cm to 50 cm in size. The current design incorporates a transfer vehicle and a netting vehicle to capture the medium-sized debris. The system is based near an operational space station located at 28.5 deg inclination and 400 km altitude. The system uses ground-based tracking to determine the location of a satellite breakup or debris cloud. These data are uploaded to the transfer vehicle, which proceeds to rendezvous with the debris at a lower altitude parking orbit. Next, the netting vehicle is deployed, tracks the targeted debris, and captures it. After expending the available nets, the netting vehicle returns to the transfer vehicle for a new netting module and continues to capture more debris in the target area. Once all the netting modules are expended, the transfer vehicle returns to the space station's orbit where it is resupplied with new netting modules from a space shuttle load. The new modules are launched by the shuttle from the ground and the expended modules are taken back to Earth for removal of the captured debris, refueling, and repacking of the nets. Once the netting modules are refurbished, they are taken back into orbit for reuse. In a typical mission, the system has the ability to capture 50 pieces of orbital debris. One mission will take approximately six months and the system is designed to allow for a 30 deg inclination change on the outgoing and incoming trips of the transfer vehicle.

Regulation Effects of Water and Nitrogen on the Source-Sink Relationship in Potato during the Tuber Bulking Stage

PubMed Central

Li, Wenting; Xiong, Binglin; Wang, Shiwen; Deng, Xiping; Yin, Lina; Li, Hongbing

2016-01-01

The source-sink relationship determines crop yield, and it is largely regulated by water and nutrients in agricultural production. This has been widely investigated in cereals, but fewer studies have been conducted in root and tuber crops such as potato (Solanum tuberosum L.). The objective of this study was to investigate the source-sink relationship in potato and the regulation of water and nitrogen on the source-sink relationship during the tuber bulking stage. A pot experiment using virus-free plantlets of the Atlantic potato cultivar was conducted, using three water levels (50%, 70% and 90% of field capacity) and three nitrogen levels (0, 0.2, 0.4 g N∙kg−1 soil). The results showed that, under all water and nitrogen levels, plant source capacity were small at the end of the experiment, since photosynthetic activity in leaves were low and non-structural reserves in underground stems were completely remobilized. While at this time, there were very big differences in maximum and minimum tuber number and tuber weight, indicating that the sink tuber still had a large potential capacity to take in assimilates. These results suggest that the source-supplied assimilates were not sufficient enough to meet the demands of sink growth. Thus, we concluded that, unlike cereals, potato yield is more likely to be source-limited than sink-limited during the tuber bulking stage. Water and nitrogen are two key factors in potato production management. Our results showed that water level, nitrogen level and the interaction between water and nitrogen influence potato yield mainly through affecting source capacity via the net photosynthetic rate, total leaf area and leaf life span. Well-watered, sufficient nitrogen and well-watered combined with sufficient nitrogen increased yield mainly by enhancing the source capacity. Therefore, this suggests that increasing source capacity is more crucial to improve potato yield. PMID:26752657

What drives the seasonal pattern of δ13C in the net land-atmosphere CO2 exchange across the United States?

NASA Astrophysics Data System (ADS)

Raczka, B. M.; Dlugokencky, E. J.; Ehleringer, J. R.; Lai, C. T.; Pataki, D. E.; Saleska, S. R.; Torn, M. S.; Vaughn, B. H.; Wehr, R. A.; Bowling, D. R.

2016-12-01

The seasonal pattern of δ13C of atmospheric CO2 depends upon both local and non-local land-atmosphere exchange and atmospheric transport. It has been suggested that the seasonal pattern is driven primarily from local variation in the δ13C of the net CO2 flux (exchange between vegetation and the atmosphere) as a result of variation of stomatal conductance of the vegetation. Here we study local variation of δ13C of the land-atmosphere exchange at 7 sites across the United States representing forests (Harvard, Howland, Niwot Ridge, Wind River), grasslands (Southern Great Plains, Rannell Prairie) and an urban center (Salt Lake City). Using a simple 2-part mixing model with background corrections we find that the δ13C of the net exchange of CO2 was most enriched at the grassland sites (-18.9 o/oo), and most depleted at the urban site (-29.6 o/oo) due to the contribution of C4 photosynthesis and fossil fuel emissions, respectively. The amplitude of the seasonal cycle was most pronounced at the C3/C4 grassland and the urban sites. In contrast, the forested sites have a reduced seasonal cycle, and remain almost constant during the growing season (0.49 o/oo change). Furthermore, by accounting for relatively fast δ13C variations in non-local sources at Niwot Ridge we find that the seasonal pattern in δ13C of net exchange is eliminated altogether. These results support the idea that a coherent, global seasonal pattern in δ13C of net exchange is influenced by seasonal transitions in C3/C4 grass, and the intensity and seasonal timing of fossil fuel emissions. This will have important implications for studies that use δ13C to constrain large-scale carbon fluxes.

Multi-year net ecosystem carbon balance at a horticulture-extracted restored peatland

NASA Astrophysics Data System (ADS)

Nugent, Kelly; Strachan, Ian; Strack, Maria

2017-04-01

Restoration of previously extracted peatlands is essential to minimize the impact of drainage and peat removal. Best practices restoration methods have been developed that include ditch blocking, site leveling and reintroducing bog vegetation using the moss layer transfer technique. A long term goal of restoration is the return to a peat accumulating ecosystem. Bois-des-Bel is a cool-temperate bog, located in eastern Quebec, Canada, that was vacuum harvested until 1980 and restored in 1999. While several studies have used discrete (chamber) methods to determine the net carbon exchange from rewetted or restored peatlands, ours appears to be the first to have multiple complete years of net ecosystem carbon exchange from a restored northern peatland. An eddy covariance flux tower instrumented with a sonic anemometer and open-path CO2/H2O and CH4 analyzers was operated continuously over three years to produce a robust estimate of net carbon sequestration. Our initial results indicate that this restored peatland was a consistent moderate annual net sink for CO2, a moderate source of CH4 and had low losses of dissolved organic carbon compared to undisturbed northern latitude peatlands. Closed chambers combined with a fast response CO2/H2O/CH4 analyzer were used to investigate ecohydrological controls on net ecosystem exchange of CO2 (NEE) and CH4 flux from the restored fields and remnant ditches at the site. CH4 release was found to be an order of magnitude higher in the ditches compared to the fields, with non-vegetated ditch showing a greater range in flux compared to areas invaded by Typha latifolia. Bubble magnitude and count were highest in the non-vegetated ditch, followed by Typha plots and were undetectable in the restored fields. The latter may be partially attributed to the high cover of Eriophorum vaginatum in the restored fields, plants that have aerenchymous tissue, as well as a much deeper water table level. While the non-vegetated ditch areas were a steady small source of CO2, NEE in the Typha plots showed significantly greater CO2 uptake capacity relative to any other restored plant community. High productivity combined with reduced CH4 flux suggests that Typha may be playing a key role in reducing the overall impact of the remnant ditches on the net ecosystem carbon balance. A preliminary footprint analysis suggests that ecosystem-level CH4 flux is being primarily driven by release from hotspots while the majority of the tower source area is a very small source of methane.

NASA Net Zero Energy Buildings Roadmap

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pless, S.; Scheib, J.; Torcellini, P.

In preparation for the time-phased net zero energy requirement for new federal buildings starting in 2020, set forth in Executive Order 13514, NASA requested that the National Renewable Energy Laboratory (NREL) to develop a roadmap for NASA's compliance. NASA detailed a Statement of Work that requested information on strategic, organizational, and tactical aspects of net zero energy buildings. In response, this document presents a high-level approach to net zero energy planning, design, construction, and operations, based on NREL's first-hand experience procuring net zero energy construction, and based on NREL and other industry research on net zero energy feasibility. The strategicmore » approach to net zero energy starts with an interpretation of the executive order language relating to net zero energy. Specifically, this roadmap defines a net zero energy acquisition process as one that sets an aggressive energy use intensity goal for the building in project planning, meets the reduced demand goal through energy efficiency strategies and technologies, then adds renewable energy in a prioritized manner, using building-associated, emission- free sources first, to offset the annual energy use required at the building; the net zero energy process extends through the life of the building, requiring a balance of energy use and production in each calendar year.« less

GHG emissions from corn-soybean rotations and perennial grasses on a Mollisol

USDA-ARS?s Scientific Manuscript database

Changes in management can convert agriculture from a net source to a net sink of greenhouse gases. A field study was established in 2003 in Indiana on a Typic Haplaquoll to determine the impact of nitrogen management on trace gas emissions. In the second phase of the experiment (2008-11), there were...

Infantry Communication Data

DTIC Science & Technology

1968-01-01

which forms a conducting medium between the electrodes of a dry cell , storage cell , or electrolytic capacitor. ELECTROMAGNETIC FIELD - A mlagnetic...Dry cel batteries. (2) Vehicular batteries. (3) Hand generators. (4) Gas engine generators. (5) Wet cell batteries. 2-5. NETTING TWO RADIO SETS: To net...1600 meters Power output .. .. .. ..... ..... ..... 5watt Power source. .. .. .. ..... ...... ... dry cell battery flA-270/U Battery lift

MASTER Net: OT in M31 direction and new CV

NASA Astrophysics Data System (ADS)

Shumkov, V.; Pogrosheva, T.; Lipunov, V.; Lopez, R. Rebolo; Serra-Ricart, M.; Buckley, D.; Gorbovskoy, E.; Tiurina, N.; Balanutsa, P.; Kuznetsov, A.; Kornilov, V.; Gress, O.; Zimnukhov, D.; Vladimirov, V.; Vlasenko, D.; Kuvshinov, D.

2018-01-01

MASTER-SAAO auto-detection system ( Lipunov et al., "MASTER Global Robotic Net", Advances in Astronomy, 2010, 30L ) discovered OT source at (RA, Dec) = 03h 00m 57.16s -66d 25m 23.1s on 2018-01-11.89176 UT. The OT unfiltered magnitude is 19.2m (mlim=20.1).

Project Scheduling Tool for Maintaining Capability Interdependencies and Defence Program Investment: A User’s Guide

DTIC Science & Technology

2014-09-01

The free, open-source Integrated Development Environment (IDE) NetBeans [11] was used in the creation of the Graphical User Interface (GUI) for the tool...Oracle Corporation (2013) NetBeans IDE 7.4, http://www.netbeans.org. 12. O’Shea, K., Pong, P. & Bulluss, G. (2012) Fit-for-Purpose Visualisation of

Understanding variation in ecosystem pulse responses to wetting: Benefits of data-model coupling

NASA Astrophysics Data System (ADS)

Jenerette, D.

2011-12-01

Metabolic pulses of activity are a common ecological response to intermittently available resources and in water-limited ecosystems these pulses often occur in response to wetting. Net ecosystem CO2 exchange (NEE) in response to episodic wetting events is hypothesized to have a complex trajectory reflecting the distinct responses, or "pulses", of respiration and photosynthesis. To help direct research activities a physiological-based model of whole ecosystem metabolic activity up- and down-regulation was developed to investigate ecosystem energy balance and gas exchange pulse responses following precipitation events. This model was to investigate pulse dynamics from a local network of sites in southern Arizona, a global network of eddy-covariance ecosystem monitoring sites, laboratory incubation studies, and field manipulations. Pulse responses were found to be ubiquitous across ecosystem types. These pulses had a highly variable influence on NEE following wetting, ranging from large net sinks to sources of CO2 to the atmosphere. Much of the variability in pulse responses of NEE could be described through a coupled up- and down-regulation pulse response model. Respiration pulses were hypothesized to occur through a reduction in whole ecosystem activation energy; this model was both useful and corroborated through laboratory incubation studies of soil respiration. Using the Fluxnet eddy-covariance measurement database event specific responses were combined with the pulse model into an event specific twenty-five day net flux calculation. Across all events observed a general net accumulation of CO2 following a precipitation event, with the largest net uptake within deciduous broadleaf forests and smallest within grasslands. NEE pulses favored greater uptake when pre-event ecosystem respiration rates and total precipitation were higher. While the latter was expected, the former adds to previous theory by suggesting a larger net uptake of CO2 when pre-event metabolic activity is higher. Scenario analyses of precipitation regimes suggested increased uptake with increasing total precipitation while more complex NEE responses to increasing number of events and interval between events. Pulse dynamics provides a general framework for understanding ecosystem responses to intermittent wetting projected to occur more frequently in future climates. Pulse dynamics also provides an opportunity to evaluate processes spanning cellular upregulation to global change.

Net Greenhouse Gas Emissions at the Eastmain 1 Reservoir, Quebec, Canada

NASA Astrophysics Data System (ADS)

Strachan, I. B.; Tremblay, A.; Bastien, J.; Bonneville, M.; Del Georgio, P.; Demarty, M.; Garneau, M.; Helie, J.; Pelletier, L.; Prairie, Y.; Roulet, N. T.; Teodoru, C. R.

2010-12-01

Canada has much potential to increase its already large use of hydroelectricity for energy production. However, hydroelectricity production in many cases requires the creation of reservoirs that inundate terrestrial ecosystems. While it has been reasonably well established that reservoirs emit GHGs, it has not been established what the net difference between the landscape scale exchange of GHGs would be before and after reservoir creation. Further, there is no indication of how that net difference may change over time from when the reservoir was first created to when it reaches a steady-state condition. A team of University and private sector researchers in partnership with Hydro-Québec has been studying net GHG emissions from the Eastmain 1 reservoir located in the boreal forest region of Québec, Canada. Net emissions are defined as those emitted following the creation of a reservoir minus those that would have been emitted or absorbed by the natural systems over a 100-year period in the absence of the reservoir. Sedimentation rates, emissions at the surface of the reservoir and natural water bodies, the degassing emissions downstream of the power house as well as the emissions/absorption of the natural ecosystems (forest, peatlands, lakes, streams and rivers) before and after the impoundment were measured using different techniques (Eddy covariance, floating chambers, automated systems, etc.). This project provides the first measurements of CO2 and CH4 between a new boreal reservoir and the atmosphere as the reservoir is being created, the development of the methodology to obtain these, and the first attempt at approaching the GHGs emissions from northern hydroelectric reservoirs as a land cover change issue. We will therefore provide: an estimate of the change in GHG source the atmosphere would see; an estimate of the net emissions that can be used for intercomparison of GHG contributions with other modes of power production; and a basis on which to develop biogeochemical sound, verifiable, and transparent estimates for GHG accounting. The results of the mass balance for this boreal reservoir from 2005 to 2009 as well as an extrapolation over 100 years will be presented.

Tsunami simulation using submarine displacement calculated from simulation of ground motion due to seismic source model

NASA Astrophysics Data System (ADS)

Akiyama, S.; Kawaji, K.; Fujihara, S.

2013-12-01

Since fault fracturing due to an earthquake can simultaneously cause ground motion and tsunami, it is appropriate to evaluate the ground motion and the tsunami by single fault model. However, several source models are used independently in the ground motion simulation or the tsunami simulation, because of difficulty in evaluating both phenomena simultaneously. Many source models for the 2011 off the Pacific coast of Tohoku Earthquake are proposed from the inversion analyses of seismic observations or from those of tsunami observations. Most of these models show the similar features, which large amount of slip is located at the shallower part of fault area near the Japan Trench. This indicates that the ground motion and the tsunami can be evaluated by the single source model. Therefore, we examine the possibility of the tsunami prediction, using the fault model estimated from seismic observation records. In this study, we try to carry out the tsunami simulation using the displacement field of oceanic crustal movements, which is calculated from the ground motion simulation of the 2011 off the Pacific coast of Tohoku Earthquake. We use two fault models by Yoshida et al. (2011), which are based on both the teleseismic body wave and on the strong ground motion records. Although there is the common feature in those fault models, the amount of slip near the Japan trench is lager in the fault model from the strong ground motion records than in that from the teleseismic body wave. First, the large-scale ground motion simulations applying those fault models used by the voxel type finite element method are performed for the whole eastern Japan. The synthetic waveforms computed from the simulations are generally consistent with the observation records of K-NET (Kinoshita (1998)) and KiK-net stations (Aoi et al. (2000)), deployed by the National Research Institute for Earth Science and Disaster Prevention (NIED). Next, the tsunami simulations are performed by the finite difference calculation based on the shallow water theory. The initial wave height for tsunami generation is estimated from the vertical displacement of ocean bottom due to the crustal movements, which is obtained from the ground motion simulation mentioned above. The results of tsunami simulations are compared with the observations of the GPS wave gauges to evaluate the validity for the tsunami prediction using the fault model based on the seismic observation records.

Summer fluxes of methane and carbon dioxide from a pond and floating mat in a continental Canadian peatland

NASA Astrophysics Data System (ADS)

Burger, Magdalena; Berger, Sina; Spangenberg, Ines; Blodau, Christian

2016-06-01

Ponds smaller than 10 000 m2 likely account for about one-third of the global lake perimeter. The release of methane (CH4) and carbon dioxide (CO2) from these ponds is often high and significant on the landscape scale. We measured CO2 and CH4 fluxes in a temperate peatland in southern Ontario, Canada, in summer 2014 along a transect from the open water of a small pond (847 m2) towards the surrounding floating mat (5993 m2) and in a peatland reference area. We used a high-frequency closed chamber technique and distinguished between diffusive and ebullitive CH4 fluxes. CH4 fluxes and CH4 bubble frequency increased from a median of 0.14 (0.00 to 0.43) mmol m-2 h-1 and 4 events m-2 h-1 on the open water to a median of 0.80 (0.20 to 14.97) mmol m-2 h-1 and 168 events m-2 h-1 on the floating mat. The mat was a summer hot spot of CH4 emissions. Fluxes were 1 order of magnitude higher than at an adjacent peatland site. During daytime the pond was a net source of CO2 equivalents to the atmosphere amounting to 0.13 (-0.02 to 1.06) g CO2 equivalents m-2 h-1, whereas the adjacent peatland site acted as a sink of -0.78 (-1.54 to 0.29) g CO2 equivalents m-2 h-1. The photosynthetic CO2 uptake on the floating mat did not counterbalance the high CH4 emissions, which turned the floating mat into a strong net source of 0.21 (-0.11 to 2.12) g CO2 equivalents m-2 h-1. This study highlights the large small-scale variability of CH4 fluxes and CH4 bubble frequency at the peatland-pond interface and the importance of the often large ecotone areas surrounding small ponds as a source of greenhouse gases to the atmosphere.

Summer fluxes of methane and carbon dioxide from a pond and floating mat in a continental Canadian peatland

NASA Astrophysics Data System (ADS)

Blodau, Christian; Burger, Magdalena; Berger, Sina; Spangenberg, Ines

2016-04-01

Ponds smaller than 10000 m2 likely account for about one third of the global lake perimeter. The release of methane (CH4) and carbon dioxide (CO2) from these ponds is often high and significant on the landscape scale. We measured CO2 and CH4 fluxes in a temperate peatland in southern Ontario, Canada, in summer 2014 along a transect from the open water of a small pond (847 m2) towards the surrounding floating mat (5993 m2) and in a peatland reference area. We used a high-frequency closed chamber technique and distinguished between diffusive and ebullitive CH4 fluxes. CH4 fluxes and CH4 bubble frequency increased from a median of 0.14 (0.00 to 0.43) mmol m-2 h-1 and 4 events m-2 h-1 on the open water to a median of 0.80 (0.20 to 14.97) mmol m-2 h-1 and 168 events m-2 h-1 on the floating mat. The mat was a summer hot spot of CH4 emissions. Fluxes were one order of magnitude higher than at an adjacent peatland site. During daytime the pond was a net source of CO2 equivalents to the atmosphere amounting to 0.13 (-0.02 to 1.06) g CO2 equivalents m-2 h-1, whereas the adjacent peatland site acted as a sink of -0.78 (-1.54 to 0.29) g CO2 equivalents m-2 h-1. The photosynthetic CO2 uptake on the floating mat did not counterbalance the high CH4 emissions, which turned the floating mat into a strong net source of 0.21 (-0.11 to 2.12) g CO2 equivalents m-2 h-1. This study highlights the large small-scale variability of CH4 fluxes and CH4 bubble frequency at the peatland-pond interface and the importance of the often large ecotone areas surrounding small ponds as a source of greenhouse gases to the atmosphere.

Health impact and cost-effectiveness of a private sector bed net distribution: experimental evidence from Zambia.

PubMed

Sedlmayr, Richard; Fink, Günther; Miller, John M; Earle, Duncan; Steketee, Richard W

2013-03-18

Relatively few programmes have attempted to actively engage the private sector in national malaria control efforts. This paper evaluates the health impact of a large-scale distribution of insecticide-treated nets (ITNs) conducted in partnership with a Zambian agribusiness, and its cost-effectiveness from the perspective of the National Malaria Control Programme (NMCP). The study was designed as a cluster-randomized controlled trial. A list of 81,597 cotton farmers was obtained from Dunavant, a contract farming company in Zambia's cotton sector, in December 2010. 39,963 (49%) were randomly selected to obtain one ITN each. Follow-up interviews were conducted with 438 farmers in the treatment and 458 farmers in the control group in June and July 2011. Treatment and control households were compared with respect to bed net ownership, bed net usage, self-reported fever, and self-reported confirmed malaria. Cost data was collected throughout the programme. The distribution effectively reached target beneficiaries, with approximately 95% of households in the treatment group reporting that they had received an ITN through the programme. The average increase in the fraction of household members sleeping under an ITN the night prior to the interview was 14.6 percentage points (p-value <0.001). Treatment was associated with a 42 percent reduction in the odds of self-reported fever (p-value <0.001) and with a 49 percent reduction in the odds of self-reported malaria (p-value 0.002). This was accomplished at a cost of approximately five US$ per ITN to Zambia's NMCP. The results illustrate that existing private sector networks can efficiently control malaria in remote rural regions. The intra-household allocation of ITNs distributed through this channel was comparable to that of ITNs received from other sources, and the health impact remained substantial.

The EB factory project. I. A fast, neural-net-based, general purpose light curve classifier optimized for eclipsing binaries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paegert, Martin; Stassun, Keivan G.; Burger, Dan M.

2014-08-01

We describe a new neural-net-based light curve classifier and provide it with documentation as a ready-to-use tool for the community. While optimized for identification and classification of eclipsing binary stars, the classifier is general purpose, and has been developed for speed in the context of upcoming massive surveys such as the Large Synoptic Survey Telescope. A challenge for classifiers in the context of neural-net training and massive data sets is to minimize the number of parameters required to describe each light curve. We show that a simple and fast geometric representation that encodes the overall light curve shape, together withmore » a chi-square parameter to capture higher-order morphology information results in efficient yet robust light curve classification, especially for eclipsing binaries. Testing the classifier on the ASAS light curve database, we achieve a retrieval rate of 98% and a false-positive rate of 2% for eclipsing binaries. We achieve similarly high retrieval rates for most other periodic variable-star classes, including RR Lyrae, Mira, and delta Scuti. However, the classifier currently has difficulty discriminating between different sub-classes of eclipsing binaries, and suffers a relatively low (∼60%) retrieval rate for multi-mode delta Cepheid stars. We find that it is imperative to train the classifier's neural network with exemplars that include the full range of light curve quality to which the classifier will be expected to perform; the classifier performs well on noisy light curves only when trained with noisy exemplars. The classifier source code, ancillary programs, a trained neural net, and a guide for use, are provided.« less

ChemNet: A Transferable and Generalizable Deep Neural Network for Small-Molecule Property Prediction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goh, Garrett B.; Siegel, Charles M.; Vishnu, Abhinav

With access to large datasets, deep neural networks through representation learning have been able to identify patterns from raw data, achieving human-level accuracy in image and speech recognition tasks. However, in chemistry, availability of large standardized and labelled datasets is scarce, and with a multitude of chemical properties of interest, chemical data is inherently small and fragmented. In this work, we explore transfer learning techniques in conjunction with the existing Chemception CNN model, to create a transferable and generalizable deep neural network for small-molecule property prediction. Our latest model, ChemNet learns in a semi-supervised manner from inexpensive labels computed frommore » the ChEMBL database. When fine-tuned to the Tox21, HIV and FreeSolv dataset, which are 3 separate chemical tasks that ChemNet was not originally trained on, we demonstrate that ChemNet exceeds the performance of existing Chemception models, contemporary MLP models that trains on molecular fingerprints, and it matches the performance of the ConvGraph algorithm, the current state-of-the-art. Furthermore, as ChemNet has been pre-trained on a large diverse chemical database, it can be used as a universal “plug-and-play” deep neural network, which accelerates the deployment of deep neural networks for the prediction of novel small-molecule chemical properties.« less

Committed carbon emissions, deforestation, and community land conversion from oil palm plantation expansion in West Kalimantan, Indonesia.

PubMed

Carlson, Kimberly M; Curran, Lisa M; Ratnasari, Dessy; Pittman, Alice M; Soares-Filho, Britaldo S; Asner, Gregory P; Trigg, Simon N; Gaveau, David A; Lawrence, Deborah; Rodrigues, Hermann O

2012-05-08

Industrial agricultural plantations are a rapidly increasing yet largely unmeasured source of tropical land cover change. Here, we evaluate impacts of oil palm plantation development on land cover, carbon flux, and agrarian community lands in West Kalimantan, Indonesian Borneo. With a spatially explicit land change/carbon bookkeeping model, parameterized using high-resolution satellite time series and informed by socioeconomic surveys, we assess previous and project future plantation expansion under five scenarios. Although fire was the primary proximate cause of 1989-2008 deforestation (93%) and net carbon emissions (69%), by 2007-2008, oil palm directly caused 27% of total and 40% of peatland deforestation. Plantation land sources exhibited distinctive temporal dynamics, comprising 81% forests on mineral soils (1994-2001), shifting to 69% peatlands (2008-2011). Plantation leases reveal vast development potential. In 2008, leases spanned ∼65% of the region, including 62% on peatlands and 59% of community-managed lands, yet <10% of lease area was planted. Projecting business as usual (BAU), by 2020 ∼40% of regional and 35% of community lands are cleared for oil palm, generating 26% of net carbon emissions. Intact forest cover declines to 4%, and the proportion of emissions sourced from peatlands increases 38%. Prohibiting intact and logged forest and peatland conversion to oil palm reduces emissions only 4% below BAU, because of continued uncontrolled fire. Protecting logged forests achieves greater carbon emissions reductions (21%) than protecting intact forests alone (9%) and is critical for mitigating carbon emissions. Extensive allocated leases constrain land management options, requiring trade-offs among oil palm production, carbon emissions mitigation, and maintaining community landholdings.

Committed carbon emissions, deforestation, and community land conversion from oil palm plantation expansion in West Kalimantan, Indonesia

PubMed Central

Carlson, Kimberly M.; Curran, Lisa M.; Ratnasari, Dessy; Pittman, Alice M.; Soares-Filho, Britaldo S.; Asner, Gregory P.; Trigg, Simon N.; Gaveau, David A.; Lawrence, Deborah; Rodrigues, Hermann O.

2012-01-01

Industrial agricultural plantations are a rapidly increasing yet largely unmeasured source of tropical land cover change. Here, we evaluate impacts of oil palm plantation development on land cover, carbon flux, and agrarian community lands in West Kalimantan, Indonesian Borneo. With a spatially explicit land change/carbon bookkeeping model, parameterized using high-resolution satellite time series and informed by socioeconomic surveys, we assess previous and project future plantation expansion under five scenarios. Although fire was the primary proximate cause of 1989–2008 deforestation (93%) and net carbon emissions (69%), by 2007–2008, oil palm directly caused 27% of total and 40% of peatland deforestation. Plantation land sources exhibited distinctive temporal dynamics, comprising 81% forests on mineral soils (1994–2001), shifting to 69% peatlands (2008–2011). Plantation leases reveal vast development potential. In 2008, leases spanned ∼65% of the region, including 62% on peatlands and 59% of community-managed lands, yet <10% of lease area was planted. Projecting business as usual (BAU), by 2020 ∼40% of regional and 35% of community lands are cleared for oil palm, generating 26% of net carbon emissions. Intact forest cover declines to 4%, and the proportion of emissions sourced from peatlands increases 38%. Prohibiting intact and logged forest and peatland conversion to oil palm reduces emissions only 4% below BAU, because of continued uncontrolled fire. Protecting logged forests achieves greater carbon emissions reductions (21%) than protecting intact forests alone (9%) and is critical for mitigating carbon emissions. Extensive allocated leases constrain land management options, requiring trade-offs among oil palm production, carbon emissions mitigation, and maintaining community landholdings. PMID:22523241

Significant role of structural fractures in Ren-Qiu buried-block oil field, eastern China

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fei, Q.; Xie-Pei, W.

1983-03-01

Ren-qui oil field is in a buried block of Sinian (upper Proterozoic) rocks located in the Ji-zhong depression of the western Bohai Bay basin in eastern China. The main reservoir consists of Sinian dolomite rocks. It is a fault block with a large growth fault on the west side which trends north-northeast with throws of up to 1 km (0.6 mi) or more. The source rocks for the oil are Paleogene age and overlie the Sinian dolomite rocks. The structural fractures are the main factor forming the reservoir of the buried-block oil field. Three structural lines, trending northeast, north-northeast, andmore » northwest, form the regional netted fracture system. The north-northeast growth fault controlled the structural development of the buried block. The block was raised and eroded before the Tertiary sediments were deposited. In the Eocene Epoch, the Ji-zhong depression subsided, but the deposition, faulting, and related uplift of the block happened synchronously as the block was gradually submerged. At the same time, several horizontal and vertical karst zones were formed by the karst water along the netted structural fractures. The Eocene oil source rocks lapped onto the block and so the buried block, with many developed karst fractures, was surrounded by a great thickness of source rocks. As the growth fault developed, the height of the block was increased from 400 m (1300 ft) before the Oligocene to 1300 m (4250 ft) after. As the petroleum was generated, it migrated immediately into the karst fractures of the buried block along the growth fault. The karst-fractured block reservoir has an 800-m (2600-ft) high oil-bearing closure and good connections developed between the karst fractures.« less

Facing the Recession: How Did Safety-Net Hospitals Fare Financially Compared with Their Peers?

PubMed Central

Reiter, Kristin L; Jiang, H Joanna; Wang, Jia

2014-01-01

Objective To examine the effect of the recession on the financial performance of safety-net versus non-safety-net hospitals. Data Sources/Study Setting Agency for Healthcare Research and Quality Hospital Cost and Utilization Project State Inpatient Databases, Medicare Cost Reports, American Hospital Association Annual Survey, InterStudy, and Area Health Resource File. Study Design Retrospective, longitudinal panel of hospitals, 2007–2011. Safety-net hospitals were identified using percentage of patients who were Medicaid or uninsured. Generalized estimating equations were used to estimate average effects of the recession on hospital operating and total margins, revenues and expenses in each year, 2008–2011, comparing safety-net with non-safety-net hospitals. Data Collection/Extraction Methods 1,453 urban, nonfederal, general acute hospitals in 32 states with complete data. Principal Findings Safety-net hospitals, as identified in 2007, had lower operating and total margins. The gap in operating margin between safety-net and non-safety-net hospitals was sustained throughout the recession; however, total margin was more negatively affected for non-safety-net hospitals in 2008. Higher percentages of Medicaid and uninsured patients were associated with lower revenue in private hospitals in all years, and lower revenue and expenses in public hospitals in 2011. Conclusions Safety-net hospitals may not be disproportionately vulnerable to macro-economic fluctuations, but their significantly lower margins leave less financial cushion to weather sustained financial pressure. PMID:25220012

HYDRA Hyperspectral Data Research Application Tom Rink and Tom Whittaker

NASA Astrophysics Data System (ADS)

Rink, T.; Whittaker, T.

2005-12-01

HYDRA is a freely available, easy to install tool for visualization and analysis of large local or remote hyper/multi-spectral datasets. HYDRA is implemented on top of the open source VisAD Java library via Jython - the Java implementation of the user friendly Python programming language. VisAD provides data integration, through its generalized data model, user-display interaction and display rendering. Jython has an easy to read, concise, scripting-like, syntax which eases software development. HYDRA allows data sharing of large datasets through its support of the OpenDAP and OpenADDE server-client protocols. The users can explore and interrogate data, and subset in physical and/or spectral space to isolate key areas of interest for further analysis without having to download an entire dataset. It also has an extensible data input architecture to recognize new instruments and understand different local file formats, currently NetCDF and HDF4 are supported.

Changes in production and respiration during a spring phytoplankton bloom in San Francisco Bay, California, USA: Implications for net ecosystem metabolism

USGS Publications Warehouse

Caffrey, J.M.; Cloern, J.E.; Grenz, C.

1998-01-01

We present results of an intensive sampling program designed to measure weekly changes in ecosystem respiration (oxygen consumption in the water column and sediments) around the 1996 spring bloom in South San Francisco Bay, California, USA. Measurements were made at a shallow site (2 m, where mean photic depth was 60% of the water column height) and a deep site (15 m, mean photic depth was only 20% of the water column). We also estimated phytoplankton primary production weekly at both sites to develop estimates of net oxygen flux as the sum of pelagic production (PP), pelagic respiration (PR) and benthic respiration (BR). Over the 14 wk period from February 5 to May 14, PP ranged from 2 to 210, PR from 9 to 289, and BR from 0.1 to 48 mmol O2 m-2 d-1, illustrating large variability of estuarine oxygen fluxes at the weekly time scale. Pelagic production exceeded total respiration at the shallow site, but not at the deep site, demonstrating that the shallow domains are net autotrophic but the deep domains are net heterotrophic, even during the period of the spring bloom. If we take into account the potential primary production by benthic microalgae, the estuary as a whole is net autotrophic during spring, net heterotrophic during the nonbloom seasons, and has a balanced net metabolism over a full annual period. The seasonal shift from net autotrophy to heterotrophy during the transition from spring to summer was accompanied by a large shift from dominance by pelagic respiration to dominance by benthic respiration. This suggests that changes in net ecosystem metabolism can reflect changes in the pathways of energy flow in shallow coastal ecosystems.

Long-period Ground Motion Characteristics Inside and Outside of the Osaka Basin during the 2011 Great Tohoku Earthquake and Its Largest Aftershock

NASA Astrophysics Data System (ADS)

Sato, K.; Iwata, T.; Asano, K.; Kubo, H.; Aoi, S.

2013-12-01

The 2011 great Tohoku earthquake (Mw 9.0) occurred on March 11, 2011, and the largest aftershock (Mw 7.7) at the region adjacent to south boundary of the mainshock's source region. Long-period ground motions (1-10s) of large amplitude were observed in the Osaka sedimentary basin about 550-800km away from the source regions during both events. We studied propagation and site characteristics of these ground motions, and found some common features between these two events in the Osaka basin. (1) The amplitude of horizontal components of the ground motion at the site-specific period is amplified at each sedimentary station. The predominant period is around 7s in the bayside area where the largest pSv were observed. (2) The velocity Fourier spectra have their peak values around 7s at the bedrock sites surrounding the Osaka basin. (3) Two remarkable wave packets separated by 30s propagating from stations around the Nobi plain to the bedrock sites near the Osaka basin were seen in the pasted-up velocity waveforms from the source regions to the Osaka basin for both events (Sato et al., 2012). Therefore, large long-period ground motions in the Osaka basin are generated by the combination of propagation-path and basin effects. Firstly, we simulate ground motions due to the largest aftershock using three-dimensional FDM (GMS; Aoi and Fujiwara, 1999). The reason we focus on the largest aftershock is that this event has a relatively small rupture area and simple rupture process compared to the mainshock. The source model is based on the model estimated by Kubo et al. (2013). The velocity structure model is a three-dimensional velocity structure based on the Japan Integrated Velocity Structure Model (Koketsu et al., 2012) and the layer of Vs 350m/s in this model is replaced with one of Vs 500m/s. The minimum effective period in this computation is 3s. Then, we compare synthetic waveforms with observed ones. At CHBH14, the nearest station to the source and 60km away from the epicenter, the synthetic waveforms of the period-band 5-50s, where Kubo et al. (2013) studied, fit well to the observed ones. However, in our target period-band 5-8s, the earlier portion of the synthetic waveform of the main packet has smaller amplitude than the observation. At the bedrock sites near the Osaka basin, two wave packets which are appeared in the observation are qualitatively reproduced in the synthetics. However, the amplitudes are not well reproduced. Moreover, the amplitude ratio of horizontal components of synthetics between the rock and the bayside stations is underestimated compared to the observed one. Improvements of the source and velocity structure models for propagation-path and basin are needed. For that sake, we will analyze the characteristics of the synthetic waveforms, study how those wave packets are generated, and discuss the discrepancy between the synthetic and observed waveforms. We will also simulate the ground motion for the mainshock to study propagation characteristics of the mainshock. ACKNOWLEDGEMENTS We used strong motion data recorded by K-NET, KiK-net and F-net of NIED, CEORKA, BRI, JMA, and Osaka prefecture. GMS provided by NIED is used for the computation.

Grazing management contributions to net global warming potential: a long-term evaluation in the Northern Great Plains.

PubMed

Liebig, M A; Gross, J R; Kronberg, S L; Phillips, R L; Hanson, J D

2010-01-01

The role of grassland ecosystems as net sinks or sources of greenhouse gases (GHGs) is limited by a paucity of information regarding management impacts on the flux of nitrous oxide (N(2)O) and methane (CH(4)). Furthermore, no long-term evaluation of net global warming potential (GWP) for grassland ecosystems in the northern Great Plains (NGP) of North America has been reported. Given this need, we sought to determine net GWP for three grazing management systems located within the NGP. Grazing management systems included two native vegetation pastures (moderately grazed pasture [MGP], heavily grazed pasture [HGP]) and a heavily grazed crested wheatgrass [Agropyron desertorum (Fisch. ex. Link) Schult.] pasture (CWP) near Mandan, ND. Factors evaluated for their contribution to GWP included (i) CO(2) emissions associated with N fertilizer production and application, (ii) literature-derived estimates of CH(4) production for enteric fermentation, (iii) change in soil organic carbon (SOC) over 44 yr using archived soil samples, and (iv) soil-atmosphere N(2)O and CH(4) fluxes over 3 yr using static chamber methodology. Analysis of SOC indicated all pastures to be significant sinks for SOC, with sequestration rates ranging from 0.39 to 0.46 Mg C ha(-1) yr(-1). All pastures were minor sinks for CH(4) (<2.0 kg CH(4)-C ha(-1) yr(-1)). Greater N inputs within CWP contributed to annual N(2)O emission nearly threefold greater than HGP and MGP. Due to differences in stocking rate, CH(4) production from enteric fermentation was nearly threefold less in MGP than CWP and HGP. When factors contributing to net GWP were summed, HGP and MGP were found to serve as net CO(2equiv.) sinks, while CWP was a net CO(2equiv.) source. Values for GWP and GHG intensity, however, indicated net reductions in GHG emissions can be most effectively achieved through moderate stocking rates on native vegetation in the NGP.

Net carbon flux of dead wood in forests of the Eastern US

Treesearch

C.W. Woodall; M.B. Russell; B.F. Walters; A.W. D' Amato; S. Fraver; G.M. Domke

2015-01-01

Downed dead wood (DDW) in forest ecosystems is a C pool whose net flux is governed by a complex of natural and anthropogenic processes and is critical to the management of the entire forest C pool. As empirical examination of DDW C net flux has rarely been conducted across large scales, the goal of this study was to use a remeasured inventory of DDW C and ancillary...

A Large Scale Code Resolution Service Network in the Internet of Things

PubMed Central

Yu, Haining; Zhang, Hongli; Fang, Binxing; Yu, Xiangzhan

2012-01-01

In the Internet of Things a code resolution service provides a discovery mechanism for a requester to obtain the information resources associated with a particular product code immediately. In large scale application scenarios a code resolution service faces some serious issues involving heterogeneity, big data and data ownership. A code resolution service network is required to address these issues. Firstly, a list of requirements for the network architecture and code resolution services is proposed. Secondly, in order to eliminate code resolution conflicts and code resolution overloads, a code structure is presented to create a uniform namespace for code resolution records. Thirdly, we propose a loosely coupled distributed network consisting of heterogeneous, independent; collaborating code resolution services and a SkipNet based code resolution service named SkipNet-OCRS, which not only inherits DHT's advantages, but also supports administrative control and autonomy. For the external behaviors of SkipNet-OCRS, a novel external behavior mode named QRRA mode is proposed to enhance security and reduce requester complexity. For the internal behaviors of SkipNet-OCRS, an improved query algorithm is proposed to increase query efficiency. It is analyzed that integrating SkipNet-OCRS into our resolution service network can meet our proposed requirements. Finally, simulation experiments verify the excellent performance of SkipNet-OCRS. PMID:23202207

Measuring an artificial intelligence system's performance on a Verbal IQ test for young children

NASA Astrophysics Data System (ADS)

Ohlsson, Stellan; Sloan, Robert H.; Turán, György; Urasky, Aaron

2017-07-01

We administered the Verbal IQ (VIQ) part of the Wechsler Preschool and Primary Scale of Intelligence (WPPSI-III) to the ConceptNet 4 artificial intelligence (AI) system. The test questions (e.g. "Why do we shake hands?") were translated into ConceptNet 4 inputs using a combination of the simple natural language processing tools that come with ConceptNet together with short Python programs that we wrote. The question answering used a version of ConceptNet based on spectral methods. The ConceptNet system scored a WPPSI-III VIQ that is average for a four-year-old child, but below average for 5-7 year olds. Large variations among subtests indicate potential areas of improvement. In particular, results were strongest for the Vocabulary and Similarities subtests, intermediate for the Information subtest and lowest for the Comprehension and Word Reasoning subtests. Comprehension is the subtest most strongly associated with common sense. The large variations among subtests and ordinary common sense strongly suggest that the WPPSI-III VIQ results do not show that "ConceptNet has the verbal abilities of a four-year-old". Rather, children's IQ tests offer one objective metric for the evaluation and comparison of AI systems. Also, this work continues previous research on psychometric AI.

A large scale code resolution service network in the Internet of Things.

PubMed

Yu, Haining; Zhang, Hongli; Fang, Binxing; Yu, Xiangzhan

2012-11-07

In the Internet of Things a code resolution service provides a discovery mechanism for a requester to obtain the information resources associated with a particular product code immediately. In large scale application scenarios a code resolution service faces some serious issues involving heterogeneity, big data and data ownership. A code resolution service network is required to address these issues. Firstly, a list of requirements for the network architecture and code resolution services is proposed. Secondly, in order to eliminate code resolution conflicts and code resolution overloads, a code structure is presented to create a uniform namespace for code resolution records. Thirdly, we propose a loosely coupled distributed network consisting of heterogeneous, independent; collaborating code resolution services and a SkipNet based code resolution service named SkipNet-OCRS, which not only inherits DHT’s advantages, but also supports administrative control and autonomy. For the external behaviors of SkipNet-OCRS, a novel external behavior mode named QRRA mode is proposed to enhance security and reduce requester complexity. For the internal behaviors of SkipNet-OCRS, an improved query algorithm is proposed to increase query efficiency. It is analyzed that integrating SkipNet-OCRS into our resolution service network can meet our proposed requirements. Finally, simulation experiments verify the excellent performance of SkipNet-OCRS.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pinkston, David

Four slides present a historical perspective on the evolution of nuclear safety, a description of systemic misalignment (available resources do not match expectations, demographic cliff developing, promulgation of increased expectations and new requirements proceeds unabated), and needs facing nuclear safety (financial stability, operational stability, and succession planning). The following conclusions are stated under the heading "Nuclear Safety - 'The System'": the current universe of requirements is too large for the resource pool available; the current universe of requirements has too many different sources of interpretation; there are so many indicators that it’s hard to know what is leading (or important);more » and the net result can come to defy integrated comprehension at the worker level.« less

Biological methanogenesis and the CO2 greenhouse effect

NASA Technical Reports Server (NTRS)

Guthrie, P. D.

1986-01-01

It is well established that plants tend to increase net photosynthesis under increased carbon dioxide. It is also well established that a large fraction of atmospheric methane is produced by microbial metabolism of organic sediments in paddies and freshwater wetlands, where a major source of organic debris is local plant growth. As CO2 increases, it may lead to increased methane production and a resulting enhancement of the expected greenhouse warming. A rough estimate of the present rate of this biologically mediated feedback on the climate system indicates that it might account for as much as 30 percent of the observed methane increase and speed up the greenhouse forcing by as much as 15 percent.

NetCDF4/HDF5 and Linked Data in the Real World - Enriching Geoscientific Metadata without Bloat

NASA Astrophysics Data System (ADS)

Ip, Alex; Car, Nicholas; Druken, Kelsey; Poudjom-Djomani, Yvette; Butcher, Stirling; Evans, Ben; Wyborn, Lesley

2017-04-01

NetCDF4 has become the dominant generic format for many forms of geoscientific data, leveraging (and constraining) the versatile HDF5 container format, while providing metadata conventions for interoperability. However, the encapsulation of detailed metadata within each file can lead to metadata "bloat", and difficulty in maintaining consistency where metadata is replicated to multiple locations. Complex conceptual relationships are also difficult to represent in simple key-value netCDF metadata. Linked Data provides a practical mechanism to address these issues by associating the netCDF files and their internal variables with complex metadata stored in Semantic Web vocabularies and ontologies, while complying with and complementing existing metadata conventions. One of the stated objectives of the netCDF4/HDF5 formats is that they should be self-describing: containing metadata sufficient for cataloguing and using the data. However, this objective can be regarded as only partially-met where details of conventions and definitions are maintained externally to the data files. For example, one of the most widely used netCDF community standards, the Climate and Forecasting (CF) Metadata Convention, maintains standard vocabularies for a broad range of disciplines across the geosciences, but this metadata is currently neither readily discoverable nor machine-readable. We have previously implemented useful Linked Data and netCDF tooling (ncskos) that associates netCDF files, and individual variables within those files, with concepts in vocabularies formulated using the Simple Knowledge Organization System (SKOS) ontology. NetCDF files contain Uniform Resource Identifier (URI) links to terms represented as SKOS Concepts, rather than plain-text representations of those terms, so we can use simple, standardised web queries to collect and use rich metadata for the terms from any Linked Data-presented SKOS vocabulary. Geoscience Australia (GA) manages a large volume of diverse geoscientific data, much of which is being translated from proprietary formats to netCDF at NCI Australia. This data is made available through the NCI National Environmental Research Data Interoperability Platform (NERDIP) for programmatic access and interdisciplinary analysis. The netCDF files contain both scientific data variables (e.g. gravity, magnetic or radiometric values), but also domain-specific operational values (e.g. specific instrument parameters) best described fully in formal vocabularies. Our ncskos codebase provides access to multiple stores of detailed external metadata in a standardised fashion. Geophysical datasets are generated from a "survey" event, and GA maintains corporate databases of all surveys and their associated metadata. It is impractical to replicate the full source survey metadata into each netCDF dataset so, instead, we link the netCDF files to survey metadata using public Linked Data URIs. These URIs link to Survey class objects which we model as a subclass of Activity objects as defined by the PROV Ontology, and we provide URI resolution for them via a custom Linked Data API which draws current survey metadata from GA's in-house databases. We have demonstrated that Linked Data is a practical way to associate netCDF data with detailed, external metadata. This allows us to ensure that catalogued metadata is kept consistent with metadata points-of-truth, and we can infer complex conceptual relationships not possible with netCDF key-value attributes alone.

Study of ion-ion plasma formation in negative ion sources by a three-dimensional in real space and three-dimensional in velocity space particle in cell model

NASA Astrophysics Data System (ADS)

Nishioka, S.; Goto, I.; Miyamoto, K.; Hatayama, A.; Fukano, A.

2016-01-01

Recently, in large-scale hydrogen negative ion sources, the experimental results have shown that ion-ion plasma is formed in the vicinity of the extraction hole under the surface negative ion production case. The purpose of this paper is to clarify the mechanism of the ion-ion plasma formation by our three dimensional particle-in-cell simulation. In the present model, the electron loss along the magnetic filter field is taken into account by the " √{τ///τ⊥ } model." The simulation results show that the ion-ion plasma formation is due to the electron loss along the magnetic filter field. Moreover, the potential profile for the ion-ion plasma case has been looked into carefully in order to discuss the ion-ion plasma formation. Our present results show that the potential drop of the virtual cathode in front of the plasma grid is large when the ion-ion plasma is formed. This tendency has been explained by a relationship between the virtual cathode depth and the net particle flux density at the virtual cathode.

Management of gastric and duodenal neuroendocrine tumors

PubMed Central

Sato, Yuichi; Hashimoto, Satoru; Mizuno, Ken-ichi; Takeuchi, Manabu; Terai, Shuji

2016-01-01

Gastrointestinal neuroendocrine tumors (GI-NETs) are rare neoplasms, like all NETs. However, the incidence of GI-NETS has been increasing in recent years. Gastric NETs (G-NETs) and duodenal NETs (D-NETs) are the common types of upper GI-NETs based on tumor location. G-NETs are classified into three distinct subgroups: type I, II, and III. Type I G-NETs, which are the most common subtype (70%-80% of all G-NETs), are associated with chronic atrophic gastritis, including autoimmune gastritis and Helicobacter pylori associated atrophic gastritis. Type II G-NETs (5%-6%) are associated with multiple endocrine neoplasia type 1 and Zollinger-Ellison syndrome (MEN1-ZES). Both type I and II G-NETs are related to hypergastrinemia, are small in size, occur in multiple numbers, and are generally benign. In contrast, type III G-NETs (10%-15%) are not associated with hypergastrinemia, are large-sized single tumors, and are usually malignant. Therefore, surgical resection and chemotherapy are generally necessary for type III G-NETs, while endoscopic resection and follow-up, which are acceptable for the treatment of most type I and II G-NETs, are only acceptable for small and well differentiated type III G-NETs. D-NETs include gastrinomas (50%-60%), somatostatin-producing tumors (15%), nonfunctional serotonin-containing tumors (20%), poorly differentiated neuroendocrine carcinomas (< 3%), and gangliocytic paragangliomas (< 2%). Most D-NETs are located in the first or second part of the duodenum, with 20% occurring in the periampullary region. Therapy for D-NETs is based on tumor size, location, histological grade, stage, and tumor type. While endoscopic resection may be considered for small nonfunctional D-NETs (G1) located in the higher papilla region, surgical resection is necessary for most other D-NETs. However, there is no consensus regarding the ideal treatment of D-NETs. PMID:27570419

Colored Petri net modeling and simulation of signal transduction pathways.

PubMed

Lee, Dong-Yup; Zimmer, Ralf; Lee, Sang Yup; Park, Sunwon

2006-03-01

Presented herein is a methodology for quantitatively analyzing the complex signaling network by resorting to colored Petri nets (CPN). The mathematical as well as Petri net models for two basic reaction types were established, followed by the extension to a large signal transduction system stimulated by epidermal growth factor (EGF) in an application study. The CPN models based on the Petri net representation and the conservation and kinetic equations were used to examine the dynamic behavior of the EGF signaling pathway. The usefulness of Petri nets is demonstrated for the quantitative analysis of the signal transduction pathway. Moreover, the trade-offs between modeling capability and simulation efficiency of this pathway are explored, suggesting that the Petri net model can be invaluable in the initial stage of building a dynamic model.

Tissue-specific NETs alter genome organization and regulation even in a heterologous system.

PubMed

de Las Heras, Jose I; Zuleger, Nikolaj; Batrakou, Dzmitry G; Czapiewski, Rafal; Kerr, Alastair R W; Schirmer, Eric C

2017-01-02

Different cell types exhibit distinct patterns of 3D genome organization that correlate with changes in gene expression in tissue and differentiation systems. Several tissue-specific nuclear envelope transmembrane proteins (NETs) have been found to influence the spatial positioning of genes and chromosomes that normally occurs during tissue differentiation. Here we study 3 such NETs: NET29, NET39, and NET47, which are expressed preferentially in fat, muscle and liver, respectively. We found that even when exogenously expressed in a heterologous system they can specify particular genome organization patterns and alter gene expression. Each NET affected largely different subsets of genes. Notably, the liver-specific NET47 upregulated many genes in HT1080 fibroblast cells that are normally upregulated in hepatogenesis, showing that tissue-specific NETs can favor expression patterns associated with the tissue where the NET is normally expressed. Similarly, global profiling of peripheral chromatin after exogenous expression of these NETs using lamin B1 DamID revealed that each NET affected the nuclear positioning of distinct sets of genomic regions with a significant tissue-specific component. Thus NET influences on genome organization can contribute to gene expression changes associated with differentiation even in the absence of other factors and overt cellular differentiation changes.

The 2011 Tohoku-oki Earthquake related to a large velocity gradient within the Pacific plate

NASA Astrophysics Data System (ADS)

Matsubara, Makoto; Obara, Kazushige

2015-04-01

We conduct seismic tomography using arrival time data picked by the high sensitivity seismograph network (Hi-net) operated by National Research Institute for Earth Science and Disaster Prevention (NIED). We used earthquakes off the coast outside the seismic network around the source region of the 2011 Tohoku-oki Earthquake with the centroid depth estimated from moment tensor inversion by NIED F-net (broadband seismograph network) as well as earthquakes within the seismic network determined by Hi-net. The target region, 20-48N and 120-148E, covers the Japanese Islands from Hokkaido to Okinawa. A total of manually picked 4,622,346 P-wave and 3,062,846 S-wave arrival times for 100,733 earthquakes recorded at 1,212 stations from October 2000 to August 2009 is available for use in the tomographic method. In the final iteration, we estimate the P-wave slowness at 458,234 nodes and the S-wave slowness at 347,037 nodes. The inversion reduces the root mean square of the P-wave traveltime residual from 0.455 s to 0.187 s and that of the S-wave data from 0.692 s to 0.228 s after eight iterations (Matsubara and Obara, 2011). Centroid depths are determined using a Green's function approach (Okada et al., 2004) such as in NIED F-net. For the events distant from the seismic network, the centroid depth is more reliable than that determined by NIED Hi-net, since there are no stations above the hypocenter. We determine the upper boundary of the Pacific plate based on the velocity structure and earthquake hypocentral distribution. The upper boundary of the low-velocity (low-V) oceanic crust corresponds to the plate boundary where thrust earthquakes are expected to occur. Where we do not observe low-V oceanic crust, we determine the upper boundary of the upper layer of the double seismic zone within high-V Pacific plate. We assume the depth at the Japan Trench as 7 km. We can investigate the velocity structure within the Pacific plate such as 10 km beneath the plate boundary since the rays from the hypocenter around the coseismic region of the Tohoku-oki earthquake take off downward and pass through the Pacific plate. The landward low-V zone with a large anomaly corresponds to the western edge of the coseismic slip zone of the 2011 Tohoku-oki earthquake. The initial break point (hypocenter) is associated with the edge of a slightly low-V and low-Vp/Vs zone corresponding to the boundary of the low- and high-V zone. The trenchward low-V and low-Vp/Vs zone extending southwestward from the hypocenter may indicate the existence of a subducted seamount. The high-V zone and low-Vp/Vs zone might have accumulated the strain and resulted in the huge coseismic slip zone of the 2011 Tohoku earthquake. The low-V and low-Vp/Vs zone is a slight fluctuation within the high-V zone and might have acted as the initial break point of the 2011 Tohoku earthquake. Reference Matsubara, M. and K. Obara (2011) The 2011 Off the Pacific Coast of Tohoku earthquake related to a strong velocity gradient with the Pacific plate, Earth Planets Space, 63, 663-667. Okada, Y., K. Kasahara, S. Hori, K. Obara, S. Sekiguchi, H. Fujiwara, and A. Yamamoto (2004) Recent progress of seismic observation networks in Japan-Hi-net, F-net, K-NET and KiK-net, Research News Earth Planets Space, 56, xv-xxviii.

Origin of Ozone NO(x) in the Tropical Troposphere: A Photochemical Analysis of Aircraft Observations Over the South Atlantic Basin

NASA Technical Reports Server (NTRS)

Jacob, D. J.; Heikes, B. G.; Fan, S.-M.; Logan, J. A.; Mauzerall, D. L.; Bradshaw, J. D.; Singh, H. B.; Gregory, G. L.; Talbot, R. W.; Blake, D. R.;

Evaluation of Common Angling-Induced Sources of Epithelial Damage for Popular Freshwater Sport Fish using Fluorescein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Colotelo, Alison HA; Cooke, Steven J.

Angling is a popular recreational activity across the globe and a large proportion of fish captured by anglers are released due to voluntary or mandatory catch-and-release practices. The handling associated with hook removal and return of the fish to their environment can cause physical damage to the epidermal layer of the fish which may affect the condition and survival of released fish. This study investigated possible sources of epithelial damage associated with several different handling methods (i.e. landing net types, interactions with different boat floor surfaces, tournament procedures) commonly used in recreational angling for two popular freshwater sport fish species,more » largemouth bass (Micropterus salmoides) and northern pike (Esox lucius). Epithelial damage was examined using fluorescein, a non-toxic dye, which has been shown to detect latent epithelial damage. Northern pike exhibited extensive epithelial damage after exposure to several of the induced treatments (i.e., interaction with a carpeted surface, knotted nylon net, and line rolling) but relatively little epithelial damage when exposed to others (i.e., knotless rubber nets, smooth boat surfaces, or lip gripping devices). Largemouth bass did not show significant epithelial damage for any of the treatments, with the exception of fish caught in a semi-professional live release tournament. The detection of latent injuries using fluorescein can be an important management tool as it provides visual examples of potential damage that can be caused by different handling methods. Such visualizations can be used to encourage fish friendly angler behaviour and enhance the survival and welfare of released fish. It can also be used to test new products that are intended to or claim to reduce injury to fish that are to be released. Future research should evaluate the relationship between different levels of epithelial damage and mortality across a range of environmental conditions.« less

Users' Manual and Installation Guide for the EverVIEW Slice and Dice Tool (Version 1.0 Beta)

USGS Publications Warehouse

Roszell, Dustin; Conzelmann, Craig; Chimmula, Sumani; Chandrasekaran, Anuradha; Hunnicut, Christina

2009-01-01

Network Common Data Form (NetCDF) is a self-describing, machine-independent file format for storing array-oriented scientific data. Over the past few years, there has been a growing movement within the community of natural resource managers in The Everglades, Fla., to use NetCDF as the standard data container for datasets based on multidimensional arrays. As a consequence, a need arose for additional tools to view and manipulate NetCDF datasets, specifically to create subsets of large NetCDF files. To address this need, we created the EverVIEW Slice and Dice Tool to allow users to create subsets of grid-based NetCDF files. The major functions of this tool are (1) to subset NetCDF files both spatially and temporally; (2) to view the NetCDF data in table form; and (3) to export filtered data to a comma-separated value file format.

Frazzled promotes growth cone attachment at the source of a Netrin gradient in the Drosophila visual system

PubMed Central

Akin, Orkun; Zipursky, S Lawrence

2016-01-01

Axon guidance is proposed to act through a combination of long- and short-range attractive and repulsive cues. The ligand-receptor pair, Netrin (Net) and Frazzled (Fra) (DCC, Deleted in Colorectal Cancer, in vertebrates), is recognized as the prototypical effector of chemoattraction, with roles in both long- and short-range guidance. In the Drosophila visual system, R8 photoreceptor growth cones were shown to require Net-Fra to reach their target, the peak of a Net gradient. Using live imaging, we show, however, that R8 growth cones reach and recognize their target without Net, Fra, or Trim9, a conserved binding partner of Fra, but do not remain attached to it. Thus, despite the graded ligand distribution along the guidance path, Net-Fra is not used for chemoattraction. Based on findings in other systems, we propose that adhesion to substrate-bound Net underlies both long- and short-range Net-Fra-dependent guidance in vivo, thereby eroding the distinction between them. DOI: http://dx.doi.org/10.7554/eLife.20762.001 PMID:27743477

Environmental Information Sources on the Net.

ERIC Educational Resources Information Center

Raeder, Aggi

1997-01-01

Discusses environmental information needs of business professionals and provides an annotated list of Web sites serving as information sources. Highlights include "meta sites", government, health, law, engineering, education, organizations, and environmental news, as well as selected environmental "hot topics." (AEF)

DialysisNet: Application for Integrating and Management Data Sources of Hemodialysis Information by Continuity of Care Record.

PubMed

Ku, Ho Suk; Kim, Sungho; Kim, HyeHyeon; Chung, Hee-Joon; Park, Yu Rang; Kim, Ju Han

2014-04-01

Health Avatar Beans was for the management of chronic kidney disease and end-stage renal disease (ESRD). This article is about the DialysisNet system in Health Avatar Beans for the seamless management of ESRD based on the personal health record. For hemodialysis data modeling, we identified common data elements for hemodialysis information (CDEHI). We used ASTM continuity of care record (CCR) and ISO/IEC 11179 for the compliance method with a standard model for the CDEHI. According to the contents of the ASTM CCR, we mapped the CDHEI to the contents and created the metadata from that. It was transformed and parsed into the database and verified according to the ASTM CCR/XML schema definition (XSD). DialysisNet was created as an iPad application. The contents of the CDEHI were categorized for effective management. For the evaluation of information transfer, we used CarePlatform, which was developed for data access. The metadata of CDEHI in DialysisNet was exchanged by the CarePlatform with semantic interoperability. The CDEHI was separated into a content list for individual patient data, a contents list for hemodialysis center data, consultation and transfer form, and clinical decision support data. After matching to the CCR, the CDEHI was transformed to metadata, and it was transformed to XML and proven according to the ASTM CCR/XSD. DialysisNet has specific consideration of visualization, graphics, images, statistics, and database. We created the DialysisNet application, which can integrate and manage data sources for hemodialysis information based on CCR standards.

Recent Advances in Understanding the Sources of Methylmercury to Coastal Waters

NASA Astrophysics Data System (ADS)

Mason, R. P.; Balcom, P.; Chen, C.; Gosnell, K. J.; Jonsson, S.; Mazrui, N.; Ortiz, V.; Seelen, E.; Schartup, A. T.; Sunderland, E. M.

2015-12-01

Understanding the sources of methylmercury (MeHg) to the food chain in coastal waters is important given the related health concerns from consumption of seafood containing elevated MeHg. While water column dissolved or particulate MeHg is the best predictor of bioaccumulation into pelagic organisms in coastal waters, there is debate concerning the dominant sources of MeHg to the water column, and how the relative importance of these sources vary with ecosystem characteristics. Potential sources include both external inputs from the watershed and offshore waters and internal sources (net methylation in sediments and the associated flux of MeHg to the water column and/or net MeHg production in the water column). We will report the results from our various studies in estuarine and coastal waters which have examined the distribution and partitioning of sediment and water column MeHg, and its formation and degradation, across a geographic range from Labrador, Canada to the Chesapeake Bay, USA. The ecosystems studied vary from shallow estuarine bays to deeper systems, and from salt wedge to tidally-dynamic systems. Additionally, both pristine and contaminated environments were examined. The studies examined the factors controlling the net production of MeHg in sediments, and in our more recent work, the potential formation of MeHg in the oxic water column of coastal waters. Sediment measurements (core and grab samples) included both solid phase and porewater MeHg and total mercury (HgT) and important ancillary parameters. Water column parameters included dissolved and particulate MeHg and HgT, TSS, nutrients, and DOC. Stable Hg isotope tracer incubations were used to assess the degree of methylation and demethylation in sediments and surface waters. Average suspended particle MeHg ranged from <5 to 120 pmol/g, and was 1-8% of HgT across sites. Mass balance estimates provide insights into the importance of external MeHg sources to coastal waters. We will use the information to evaluate the following questions: 1) what conditions favor external sources of MeHg over internal production? 2) what conditions enhance net in situ water column formation of MeHg? and 3) what conditions enhance the exchange of MeHg at the sediment/water interface in coastal waters?

An incentive-based source separation model for sustainable municipal solid waste management in China.

PubMed

Xu, Wanying; Zhou, Chuanbin; Lan, Yajun; Jin, Jiasheng; Cao, Aixin

2015-05-01

Municipal solid waste (MSW) management (MSWM) is most important and challenging in large urban communities. Sound community-based waste management systems normally include waste reduction and material recycling elements, often entailing the separation of recyclable materials by the residents. To increase the efficiency of source separation and recycling, an incentive-based source separation model was designed and this model was tested in 76 households in Guiyang, a city of almost three million people in southwest China. This model embraced the concepts of rewarding households for sorting organic waste, government funds for waste reduction, and introducing small recycling enterprises for promoting source separation. Results show that after one year of operation, the waste reduction rate was 87.3%, and the comprehensive net benefit under the incentive-based source separation model increased by 18.3 CNY tonne(-1) (2.4 Euros tonne(-1)), compared to that under the normal model. The stakeholder analysis (SA) shows that the centralized MSW disposal enterprises had minimum interest and may oppose the start-up of a new recycling system, while small recycling enterprises had a primary interest in promoting the incentive-based source separation model, but they had the least ability to make any change to the current recycling system. The strategies for promoting this incentive-based source separation model are also discussed in this study. © The Author(s) 2015.

ANTARES and KM3NeT programs for the supernova neutrino detection

NASA Astrophysics Data System (ADS)

Kulikovskiy, Vladimir

2017-02-01

The currently working ANTARES neutrino telescope has capabilities to detect neutrinos produced in astrophysical transient sources. Neutrino alerts are regularly generated to trigger multi-wavelength observatories. Potential sources include gamma-ray bursts, core-collapse supernovae, and flaring active galactic nuclei. In particular, the neutrino detection together with the multi-wavelength observations may reveal hidden jets in the supernova explosions. Supernovae remnants are currently the most promising acceleration sites of the cosmic rays in our Galaxy. The neutrino emission is expected during the cosmic ray interaction with the surrounding matter. The neutrino telescopes in the Northern hemisphere have excellent visibility to the most of the galactic supernovae remnants. Recent results on the search for point-sources with the ANTARES detector and the prospects for the future KM3NeT detector are presented. Although ANTARES and KM3NeT detectors are mainly designed for high energy neutrino detection, the MeV neutrino signal from the supernova can be identified as a simultaneous increase of the counting rate of the optical modules in the detector. The noise from the optical background due to 40K decay in the sea water and the bioluminescence can be significantly reduced by using nanosecond coincidences between the nearby placed photomultipliers. This technique has been tested with the ANTARES storeys, each one consisting of three 10-inch photomultipliers, and it is further optimized for the KM3NeT telescope where the directional optical modules containing 31 3-inch photomultipliers provide very promising expectations.

Potential contribution of groundwater to dry-season ET in the Amazon

NASA Astrophysics Data System (ADS)

Miguez-Macho, Gonzalo; Fan, Ying

2010-05-01

Climate and land ecosystem models simulate vegetation stress in the Amazon forest in the dry season, but observations show enhanced growth in response to higher radiation under less cloudy skies indicating an adequate water supply. The question is: how does the vegetation obtain sufficient water, and what is missing in the models? Shallow model soil and rooting depth is a factor; the ability of roots to move water up and down (hydraulic redistribution) may be another, but another cause may lie in the buffering effect of the groundwater found in nature but absent in models. We present observational and modeling evidence that the vast groundwater store, consequence of high annual rainfall combined with poor drainage in the Amazon, may provide a stable source for dry-season photosynthesis. The water table beneath the Amazon is sufficiently shallow (38% area <5m and 63% area <10m deep) as to contribute >2mm/day to dry-season evapotranspiration, a non-negligible portion of tower-observed flux of 3-4mm/day, the latter including canopy-interception loss and open-water evaporation. This may have important implications to our understanding of Amazonia ecosystem response and feedback to climate change. Current models, lacking groundwater, predict a significant reduction in dry-season photosynthesis under current climate and large-scale dieback under projected future climate converting the Amazon from a net carbon sink to a net source and accelerating warming. If groundwater is considered in the models, the magnitude of the responses and feedbacks may be reduced.

A Global Modeling Study on Carbonaceous Aerosol Microphysical Characteristics and Radiative Effects

NASA Technical Reports Server (NTRS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-01-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, indirect and semi-direct aerosol effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative effects. Our best estimate for net direct and indirect aerosol radiative flux change between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative flux change can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Absorption of black carbon aerosols is amplified by sulfate and nitrate coatings and, even more strongly, by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative fluxeswhen sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to a reduction in positive radiative flux.

Historical and future perspectives of global soil carbon response to climate and land-use changes

NASA Astrophysics Data System (ADS)

Eglin, T.; Ciais, P.; Piao, S. L.; Barre, P.; Bellassen, V.; Cadule, P.; Chenu, C.; Gasser, T.; Koven, C.; Reichstein, M.; Smith, P.

2010-11-01

ABSTRACT In this paper, we attempt to analyse the respective influences of land-use and climate changes on the global and regional balances of soil organic carbon (SOC) stocks. Two time periods are analysed: the historical period 1901-2000 and the period 2000-2100. The historical period is analysed using a synthesis of published data as well as new global and regional model simulations, and the future is analysed using models only. Historical land cover changes have resulted globally in SOC release into the atmosphere. This human induced SOC decrease was nearly balanced by the net SOC increase due to higher CO2 and rainfall. Mechanization of agriculture after the 1950s has accelerated SOC losses in croplands, whereas development of carbon-sequestering practices over the past decades may have limited SOC loss from arable soils. In some regions (Europe, China and USA), croplands are currently estimated to be either a small C sink or a small source, but not a large source of CO2 to the atmosphere. In the future, according to terrestrial biosphere and climate models projections, both climate and land cover changes might cause a net SOC loss, particularly in tropical regions. The timing, magnitude, and regional distribution of future SOC changes are all highly uncertain. Reducing this uncertainty requires improving future anthropogenic CO2 emissions and land-use scenarios and better understanding of biogeochemical processes that control SOC turnover, for both managed and un-managed ecosystems.

A global modeling study on carbonaceous aerosol microphysical characteristics and radiative effects

NASA Astrophysics Data System (ADS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-08-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, indirect and semi-direct aerosol effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative effects. Our best estimate for net direct and indirect aerosol radiative flux change between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative flux change can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Absorption of black carbon aerosols is amplified by sulfate and nitrate coatings and, even more strongly, by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative fluxeswhen sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to a reduction in positive radiative flux.

Transient traceability analysis of land carbon storage dynamics: procedures and its application to two forest ecosystems

NASA Astrophysics Data System (ADS)

Jiang, L.; Shi, Z.; Xia, J.; Liang, J.; Lu, X.; Wang, Y.; Luo, Y.

2017-12-01

Uptake of anthropogenically emitted carbon (C) dioxide by terrestrial ecosystem is critical for determining future climate. However, Earth system models project large uncertainties in future C storage. To help identify sources of uncertainties in model predictions, this study develops a transient traceability framework to trace components of C storage dynamics. Transient C storage (X) can be decomposed into two components, C storage capacity (Xc) and C storage potential (Xp). Xc is the maximum C amount that an ecosystem can potentially store and Xp represents the internal capacity of an ecosystem to equilibrate C input and output for a network of pools. Xc is co-determined by net primary production (NPP) and residence time (𝜏N), with the latter being determined by allocation coefficients, transfer coefficients, environmental scalar, and exit rate. Xp is the product of redistribution matrix (𝜏ch) and net ecosystem exchange. We applied this framework to two contrasting ecosystems, Duke Forest and Harvard Forest with an ecosystem model. This framework helps identify the mechanisms underlying the responses of carbon cycling in the two forests to climate change. The temporal trajectories of X are similar between the two ecosystems. Using this framework, we found that two different mechanisms leading to the similar trajectory. This framework has potential to reveal mechanisms behind transient C storage in response to various global change factors. It can also identify sources of uncertainties in predicted transient C storage across models and can therefore be useful for model intercomparison.

Reconciling carbon-cycle concepts, terminology, and methodology

Treesearch

F.S. III Chapin; G.M Woodwell; J.T. Randerson; G.M. Lovett; E.B. Rastetter; D.D. Baldocchi; D.A. Clark; M.E. Harmon; D.S. Schimel; Valentini R.; Wirth C.; Aber J.D.; Cole J.J.; Goulden M.L.; Harden J.W.; Heimann M.; Howarth R.W.; Matson P.A.; McGuire A.D.; Melillo J.M.; H.A. Mooney; J.C. Neff; R.A. Houghton; M.L. Pace; M.G. Ryan; S.W. Running; O.E. Sala; W.H. Schlesinger; E. D. Schulze

2005-01-01

Recent projections of climatic change have focused a great deal of scientific and public attention on patterns of carbon (C) cycling as well as its controls, particularly the factors that determine whether an ecosystem is a net source or sink of atmospheric carbon dioxide (CO2). Net ecosystem production (NEP), a central concept in C-cycling research, has been used by...

Interannual, seasonal, and retrospective analysis of the methane and carbon dioxide budgets of a temperate peatland

Treesearch

D.M. Olson; T.J. Griffis; A. Noormets; R. Kolka; J. Chen

2013-01-01

Three years (2009-2011) of near-continuous methane (CH4) and carbon dioxide (CO2) fluxes were measured with the eddy covariance (EC) technique at a temperate peatland located within the Marcell Experimental Forest, in northern Minnesota, USA. The peatland was a net source of CH4 and a net sink of CO...

Shadow netWorkspace: An Open Source Intranet for Learning Communities

ERIC Educational Resources Information Center

Laffey, James M.; Musser, Dale

2006-01-01

Shadow netWorkspace (SNS) is a web application system that allows a school or any type of community to establish an intranet with network workspaces for all members and groups. The goal of SNS has been to make it easy for schools and other educational organizations to provide network services in support of implementing a learning community. SNS is…

Comparison of net global warming potential and greenhouse gas intensity affected by management practices in two dryland cropping sites

USDA-ARS?s Scientific Manuscript database

Little is known about the effect of management practices on net global warming potential (GWP) and greenhouse gas intensity (GHGI) that account for all sources and sinks of greenhouse gas (GHG) emissions in dryland cropping systems. The objective of this study was to compare the effect of a combinat...

A global meta-analysis on the impact of management practices on net global warming potential and greenhouse gas intensity from cropland soils

USDA-ARS?s Scientific Manuscript database

Agricultural practices contribute significant amount of greenhouse gas (GHG) emissions, but little is known about their effects on net global warming potential (GWP) and greenhouse gas intensity (GHGI) that account for all sources and sinks of carbon dioxide emissions per unit area or crop yield. Se...

Less-Educated Workers' Unstable Employment: Can the Safety Net Help? Fast Focus. No. 19-2014

ERIC Educational Resources Information Center

Hill, Heather D.; Ybarra, Marci A.

2014-01-01

Since the 1980s, U.S. workers with less than a college education have faced increasing job instability at the same time that the safety net has become increasingly contingent on employment. The sources of instability are many, including variable schedules, not enough hours, and temporary employment. A policy forum hosted by the Employment…

Attribution of net carbon change by disturbance type across forest lands of the conterminous United States

Treesearch

N. L. Harris; S. C. Hagen; S. S. Saatchi; T. R. H. Pearson; Christopher W. Woodall; Grant M. Domke; B. H. Braswell; Brian F. Walters; S. Brown; W. Salas; A. Fore; Y. Yu

2016-01-01

Background: Locating terrestrial sources and sinks of carbon (C) will be critical to developing strategies that contribute to the climate change mitigation goals of the Paris Agreement. Here we present spatially resolved estimates of net C change across United States (US) forest lands between 2006 and 2010 and attribute them to natural and anthropogenic processes....

A large-area RF source for negative hydrogen ions

NASA Astrophysics Data System (ADS)

Frank, P.; Feist, J. H.; Kraus, W.; Speth, E.; Heinemann, B.; Probst, F.; Trainham, R.; Jacquot, C.

1998-08-01

In a collaboration with CEA Cadarache, IPP is presently developing an rf source, in which the production of negative ions (H-/D-) is being investigated. It utilizes PINI-size rf sources with an external antenna and for the first step a small size extraction system with 48 cm2 net extraction area. First results from BATMAN (Ba¯varian T_est Ma¯chine for N_egative Ions) show (without Cs) a linear dependence of the negative ion yield with rf power, without any sign of saturation. At elevated pressure (1.6 Pa) a current density of 4.5 mA/cm2 H- (without Cs) has been found so far. At medium pressure (0.6 Pa) the current density is lower by approx. a factor of 5, but preliminary results with Cesium injection show a relative increase by almost the same factor in this pressure range. Langmuir probe measurements indicate an electron temperature Te>2 eV close to the plasma grid with a moderate magnetic filter (700 Gcm). Attempts to improve the performance by using different magnetic configurations and different wall materials are under way.

Transmission and scattering of acoustic energy in turbulent flows

NASA Astrophysics Data System (ADS)

Gaitonde, Datta; Unnikrishnan, S.

2017-11-01

Sound scattering and transmission in turbulent jets are explored through a control volume analysis of a Large-Eddy Simulation. The fluctuating momentum flux across any control surface is first split into its rotational turbulent ((ρu)'H) and the irrotational-isentropic acoustic ((ρu)'A) components using momentum potential theory (MPT). The former has low spatio-temporal coherence, while the latter exhibits a persistent wavepacket form. The energy variable, specifically, total fluctuating enthalpy, is also split into its turbulent and acoustic modes, HH' and HA' respectively. Scattering of acoustic energy is then (ρu)'HHA' , and transmission is (ρu)'AHA' . This facilitates a quantitative comparison of scattering versus transmission in the presence of acoustic energy sources, also obtained from MPT, in any turbulent scenario. The wavepacket converts stochastic sound sources into coherent sound radiation. Turbulent eddies are not only sources of sound, but also play a strong role in scattering, particularly near the lipline. The net acoustic flux from the jet is the transport of HA' by the wavepacket, whose axisymmetric and higher azimuthal modes contribute to downstream and sideline radiation respectively.

OrChem - An open source chemistry search engine for Oracle(R).

PubMed

Rijnbeek, Mark; Steinbeck, Christoph

2009-10-22

Registration, indexing and searching of chemical structures in relational databases is one of the core areas of cheminformatics. However, little detail has been published on the inner workings of search engines and their development has been mostly closed-source. We decided to develop an open source chemistry extension for Oracle, the de facto database platform in the commercial world. Here we present OrChem, an extension for the Oracle 11G database that adds registration and indexing of chemical structures to support fast substructure and similarity searching. The cheminformatics functionality is provided by the Chemistry Development Kit. OrChem provides similarity searching with response times in the order of seconds for databases with millions of compounds, depending on a given similarity cut-off. For substructure searching, it can make use of multiple processor cores on today's powerful database servers to provide fast response times in equally large data sets. OrChem is free software and can be redistributed and/or modified under the terms of the GNU Lesser General Public License as published by the Free Software Foundation. All software is available via http://orchem.sourceforge.net.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Torcellini, P.; Pless, S.; Lobato, C.

Ongoing work at the National Renewable Energy Laboratory indicates that net-zero energy building (NZEB) status is both achievable and repeatable today. This paper presents a definition framework for classifying NZEBs and a real-life example that demonstrates how a large-scale office building can cost-effectively achieve net-zero energy.

The influence of health policy and market factors on the hospital safety net.

PubMed

Bazzoli, Gloria J; Lindrooth, Richard C; Kang, Ray; Hasnain-Wynia, Romana

2006-08-01

To examine how the financial pressures resulting from the Balanced Budget Act (BBA) of 1997 interacted with private sector pressures to affect indigent care provision. American Hospital Association Annual Survey, Area Resource File, InterStudy Health Maintenance Organization files, Current Population Survey, and Bureau of Primary Health Care data. We distinguished core and voluntary safety net hospitals in our analysis. Core safety net hospitals provide a large share of uncompensated care in their markets and have large indigent care patient mix. Voluntary safety net hospitals provide substantial indigent care but less so than core hospitals. We examined the effect of financial pressure in the initial year of the 1997 BBA on uncompensated care for three hospital groups. Data for 1996-2000 were analyzed using approaches that control for hospital and market heterogeneity. All urban U.S. general acute care hospitals with complete data for at least 2 years between 1996 and 2000, which totaled 1,693 institutions. Core safety net hospitals reduced their uncompensated care in response to Medicaid financial pressure. Voluntary safety net hospitals also responded in this way but only when faced with the combined forces of Medicaid and private sector payment pressures. Nonsafety net hospitals did not exhibit similar responses. Our results are consistent with theories of hospital behavior when institutions face reductions in payment. They raise concern given continuing state budget crises plus the focus of recent federal deficit reduction legislation intended to cut Medicaid expenditures.

A review of circulation and mixing studies of San Francisco Bay, California

USGS Publications Warehouse

Smith, Lawrence H.

1987-01-01

A description of the major characteristics and remaining unknowns of circulation and mixing in San Francisco Bay has been constructed from a review of published studies. From a broad perspective San Francisco Bay is an ocean-river mixing zone with a seaward flow equal to the sum of the river inflows less evaporation. Understanding of circulation and mixing within the bay requires quantification of freshwater inflows and ocean-bay exchanges, characterization of source-water variations, and separation of the within-bay components of circulation and mixing processes. Description of net circulation and mixing over a few days to a few months illustrates best the interactions of major components. Quantification of tidal circulation and mixing is also necessary because net circulation and mixing contain a large tide-induced component, and because tidal variations are dominant in measurements of stage, currents, and salinity. The discharge of the Sacramento-San Joaquin Delta into Suisun Bay is approximately 90 percent of the freshwater inflow to San Francisco Bay. Annual delta discharge is characterized by a winter season of high runoff and a summer season of low runoff. For the period 1956 to 1985 the mean of monthly discharges exceeded 1,000 cubic meters per second (35,000 cubic feet per second) for the months of December through April, whereas for July through October, it was less than 400 cubic meters per second (14,000 cubic feet per second). The months of November, May, and June commonly were transition months between these seasons. Large year-to-year deviations from this annual pattern have occurred frequently. Much less is known about the ocean-bay exchange process. Net exchanges depend on net seaward flow in the bay, tidal amplitude, and longshore coastal currents, but exchanges have not yet been measured successfully. Source-water variations are ignored by limiting discussion of mixing to salinity. The bay is composed of a northern reach, which is strongly influenced by delta discharge, and South Bay, a tributary estuary which responds to conditions in Central Bay. In the northern reach net circulation is characterized by the river-induced seaward, flow and a resulting gravitational circulation in the channels, and by a tide- and wind-induced net horizontal circulation. A surface layer of relatively fresh water in Central Bay generated by high delta discharges can induce gravitational circulation in South Bay. During low delta discharges South Bay has nearly the same salinity as Central Bay and is characterized by tide- and wind-induced net horizontal circulation. Several factors control the patterns of circulation and mixing in San Francisco Bay. Viewing circulation and mixing over different time-periods and at different geographic scales causes the influences of different factors to be emphasized. The exchange between the bay and coastal ocean and freshwater inflows determine the year-to-year behavior of San Francisco Bay as a freshwater-saltwater mixing zone. Within the bay, exchanges between the embayments control variations over a season. Circulation and mixing patterns within the embayments and the magnitude of river-induced seaward flow influence the between-bay exchanges. The within-bay patterns are in turn determined by tides, winds, and freshwater inflows. Because freshwater inflow is the only factor that can be managed, a major study focus is estimation of inflow-related effects. Most questions relate to the patterns of freshwater inflow necessary to protect valuable resources whose welfare is dependent on conditions in the bay. Among the important questions being addressed are: --What quantity of freshwater inflow is necessary to prevent salt intrusion into the Sacramento-San Joaquin Delta, and what salinity distributions in the bay would result from various inflow patterns? --What quantity of freshwater inflow is sufficient to flush pollutants through the bay? Knowledge of circul

Identifying the Most Important 21st Century Workforce Competencies: An Analysis of the Occupational Information Network (O*NET). Research Report. ETS RR-13-21

ERIC Educational Resources Information Center

Burrus, Jeremy; Jackson, Teresa; Xi, Nuo; Steinberg, Jonathan

2013-01-01

To identify the most important competencies for college graduates to succeed in the 21st century workforce, we conducted an analysis of the Occupational Information Network (O*NET) database. O*NET is a large job analysis operated and maintained by the U.S. Department of Labor. We specifically analyzed ratings of the importance of abilities (52…

Tsunami Simulation Method Assimilating Ocean Bottom Pressure Data Near a Tsunami Source Region

NASA Astrophysics Data System (ADS)

Tanioka, Yuichiro

2018-02-01

A new method was developed to reproduce the tsunami height distribution in and around the source area, at a certain time, from a large number of ocean bottom pressure sensors, without information on an earthquake source. A dense cabled observation network called S-NET, which consists of 150 ocean bottom pressure sensors, was installed recently along a wide portion of the seafloor off Kanto, Tohoku, and Hokkaido in Japan. However, in the source area, the ocean bottom pressure sensors cannot observe directly an initial ocean surface displacement. Therefore, we developed the new method. The method was tested and functioned well for a synthetic tsunami from a simple rectangular fault with an ocean bottom pressure sensor network using 10 arc-min, or 20 km, intervals. For a test case that is more realistic, ocean bottom pressure sensors with 15 arc-min intervals along the north-south direction and sensors with 30 arc-min intervals along the east-west direction were used. In the test case, the method also functioned well enough to reproduce the tsunami height field in general. These results indicated that the method could be used for tsunami early warning by estimating the tsunami height field just after a great earthquake without the need for earthquake source information.

The evaluation of web-based data collection for enhanced surveillance of cryptosporidiosis.

PubMed

Viney, Kerri A; McAnulty, Jeremy M

2008-01-01

Following an increase in the number of people diagnosed with cryptosporidiosis in November 2005, the Communicable Diseases Branch initiated enhanced surveillance using a developmental version of NetEpi Collection, an open-source, web-based data collection tool. We evaluated the usefulness of NetEpi Collection for enhanced surveillance, using the Centers for Disease Control and Prevention's Updated Guidelines for Evaluating Public Health Surveillance Systems as a guide. Most staff (73 per cent) who used NetEpi Collection found it easy to use. Although ongoing support was thought to be adequate by 82 per cent of respondents who used NetEpi Collection, 36 per cent reported that training was limited and 27 per cent reported technical problems such as internet, server and password problems. In order to improve its usefulness in enhanced surveillance, training in NetEpi Collection should be enhanced and the stability of the system improved.

Do HMO and its for-profit expansion jeopardize the survival of hospital safety net services?

PubMed

Shen, Yu-Chu

2009-03-01

This study examines the effect of health maintenance organizations (HMOs) and for-profit HMO share on the survival of safety net services in hospitals between 1990 and 2004. The primary data sources are the American Hospital Association Annual Surveys, the Medicare hospital cost reports, and the HMO enrollment and ownership data from Interstudy. I analyze the risks of shutting down each safety net service separately using the proportional hazard models. I find that the risks of shutting down hospital safety net services do not vary by different levels of overall HMO penetration. However, conditional on the overall HMO penetration level, increasing for-profit presence of HMO does increase the risks of shutting down several safety net services. Policies evaluating the for-profit expansion or ownership conversion of health plans should take this potential adverse effect into consideration.

Source apportionment modeling of volatile organic compounds in streams

USGS Publications Warehouse

Pankow, J.F.; Asher, W.E.; Zogorski, J.S.

2006-01-01

It often is of interest to understand the relative importance of the different sources contributing to the concentration cw of a contaminant in a stream; the portions related to sources 1, 2, 3, etc. are denoted cw,1, cw,2, cw,3, etc. Like c w, 'he fractions ??1, = cw,1/c w, ??2 = cw,2/cw, ??3 = cw,3/cw, etc. depend on location and time. Volatile organic compounds (VOCs) can undergo absorption from the atmosphere into stream water or loss from stream water to the atmosphere, causing complexities affecting the source apportionment (SA) of VOCs in streams. Two SA rules are elaborated. Rule 1: VOC entering a stream across the air/water interface exclusively is assigned to the atmospheric portion of cw. Rule 2: VOC loss by volatilization, flow loss to groundwater, in-stream degradation, etc. is distributed over cw,1 cw,2, c w,3, etc. in proportion to their corresponding ?? values. How the two SA rules are applied, as well as the nature of the SA output for a given case, will depend on whether transport across the air/water interface is handled using the net flux F convention or using the individual fluxes J convention. Four hypothetical stream cases involving acetone, methyl-tert-butyl ether (MTBE), benzene, chloroform, and perchloroethylene (PCE) are considered. Acetone and MTBE are sufficiently water soluble from air for a domestic atmospheric source to be capable of yielding cw values approaching the common water quality guideline range of 1 to 10 ??g/L. For most other VOCs, such levels cause net outgassing (F > 0). When F > 0 in a given section of stream, in the net flux convention, all of the ??j, for the compound remain unchanged over that section while cw decreases. A characteristic time ??d can be calculated to predict when there will be differences between SA results obtained by the net flux convention versus the individual fluxes convention. Source apportionment modeling provides the framework necessary for comparing different strategies for mitigating contamination at points of interest along a stream. ?? 2006 SETAC.

The pathogenesis of necrotic enteritis in chickens: what we know and what we need to know: a review.

PubMed

Prescott, John F; Parreira, Valeria R; Mehdizadeh Gohari, Iman; Lepp, Dion; Gong, Joshua

2016-06-01

This review summarizes advances in understanding the pathogenesis of necrotic enteritis of chickens caused by netB-positive Clostridium perfringens. The discovery of NetB as the essential toxin trigger for the disease was followed by recognition that it forms part of a large plasmid-encoded 42 kb pathogenicity locus (NELoc-1). While the locus is critical for toxin production, it likely has additional functions related to colonization and degradation of the mucus barrier, which are essential both to multiplication and to bringing NetB close to the intestinal epithelium. Two "chitinases" (glycoside hydrolases (GHs)) present on NELoc-1 are predicted to be involved in mucin degradation, as is the large carbohydrate-binding metalloprotease, shown to be involved in mucinase activity in other clostridia. A second pathogenicity locus found in netB-positive C. perfringens, NELoc-2, also encodes a GH likely involved in mucin degradation. Upon reaching a sufficient cell density on the intestinal mucosa, the Agr-like quorum-sensing system is triggered, which in turn up-regulates the VirR/VirS regulon. This regulon includes NetB. Where NetB initiates damage is unresolved, but it may be deep in the intestinal mucosa, rather than superficially. As the disease progresses, C. perfringens line what remains of the intestinal epithelium in large numbers. This likely involves a number of different bacterial adhesins, including additional NELoc-1-encoded bacterial surface proteins, some of which may adhere to epithelial cell ligands exposed by bacterial sialidases. Further studies of the pathogenesis of necrotic enteritis should lead to development of novel ways to control the infection.

Structural Racism in the Workplace: Does Perception Matter for Health Inequalities?

PubMed Central

McCluney, Courtney L.; Schmitz, Lauren L.; Hicken, Margaret T.; Sonnega, Amanda

2017-01-01

Structural racism has been linked to racial health inequalities and may operate through an unequal labor market that results in inequalities in psychosocial workplace environments (PWE). Experiences of the PWE may be a critical but understudied source of racial health disparities as most adults spend a large portion of their lives in the workplace, and work-related stress affects health outcomes. Further, it is not clear if the objective characteristics of the workplace are important for health inequalities or if these inequalities are driven by the perception of the workplace. Using data from the 2008 to 2012 waves of the Health and Retirement Study (HRS), a probability-based sample of US adults 50 years of age and older and the Department of Labor’s Occupational Information Network (O*NET), we examine the role of both standardized, objective (O*NET) and survey-based, subjective (as in HRS) measures of PWEs on health and Black-White health inequalities. We find that Blacks experience more stressful PWEs and have poorer health as measured by self-rated health, episodic memory function, and mean arterial pressure. Mediation analyses suggest that these objective O*NET ratings, but not the subjective perceptions, partially explain the relationship between race and health. We discuss these results within the extant literature on workplace and health and health inequalities. Furthermore, we discuss the use of standardized objective measures of the PWE to capture racial inequalities in workplace environment. PMID:28552294

Electric power monthly, June 1988

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1988-09-15

Total net generation by electric utilities in the United States for the month of June 1988 was 232,183 gigawatthours, 3 percent higher than the amount reported a year ago. Although temperatures (measured by cooling degree days) for June 1988 were 9 percent warmer than normal, they were 3 percent cooler than for June 1987. A large portion of that higher demand for electricity was met by nuclear-powered generation. Net generation from nuclear power during June 1988 (44,079 gigawatthours) was only 1 percent below the record set in January of this year, and 21 percent above that reported in June 1987more » (36,560 gigawatthours). The only energy source other than nuclear that reported higher levels of net generation during June 1988 was coal, up 2 percent over the same period last year. Warmer-than-normal temperatures did, however, have an affect on various parts of the country. For example, on Wednesday, June 22, 1988, unseasonably high temperatures forced the Pennsylvania, New Jersey, and Maryland Interconnection (PJM) into a system-wide 5-percent voltage reduction for 2 hours. Contributing to that reduction in voltage was the shutdown of the Three Mile Island, Unit 1, for refueling and the closing of the Peach Bottom Units 2 and 3 by the Nuclear Regulatory Commission. Three Mile Island, Unit 1, normally provides the PJM system with about 800 megawatts while the two Peach Bottom units, combined, provide approximately 2100 megawatts. 10 refs., 1 fig., 27 tabs.« less

Structural racism in the workplace: Does perception matter for health inequalities?

PubMed

McCluney, Courtney L; Schmitz, Lauren L; Hicken, Margaret T; Sonnega, Amanda

2018-02-01

Structural racism has been linked to racial health inequalities and may operate through an unequal labor market that results in inequalities in psychosocial workplace environments (PWE). Experiences of the PWE may be a critical but understudied source of racial health disparities as most adults spend a large portion of their lives in the workplace, and work-related stress affects health outcomes. Further, it is not clear if the objective characteristics of the workplace are important for health inequalities or if these inequalities are driven by the perception of the workplace. Using data from the 2008 to 2012 waves of the Health and Retirement Study (HRS), a probability-based sample of US adults 50 years of age and older and the Department of Labor's Occupational Information Network (O*NET), we examine the role of both standardized, objective (O*NET) and survey-based, subjective (as in HRS) measures of PWEs on health and Black-White health inequalities. We find that Blacks experience more stressful PWEs and have poorer health as measured by self-rated health, episodic memory function, and mean arterial pressure. Mediation analyses suggest that these objective O*NET ratings, but not the subjective perceptions, partially explain the relationship between race and health. We discuss these results within the extant literature on workplace and health and health inequalities. Furthermore, we discuss the use of standardized objective measures of the PWE to capture racial inequalities in workplace environment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Energy Return on Investment (EROI) for Forty Global Oilfields Using a Detailed Engineering-Based Model of Oil Production.

PubMed

Brandt, Adam R; Sun, Yuchi; Bharadwaj, Sharad; Livingston, David; Tan, Eugene; Gordon, Deborah

2015-01-01

Studies of the energy return on investment (EROI) for oil production generally rely on aggregated statistics for large regions or countries. In order to better understand the drivers of the energy productivity of oil production, we use a novel approach that applies a detailed field-level engineering model of oil and gas production to estimate energy requirements of drilling, producing, processing, and transporting crude oil. We examine 40 global oilfields, utilizing detailed data for each field from hundreds of technical and scientific data sources. Resulting net energy return (NER) ratios for studied oil fields range from ≈2 to ≈100 MJ crude oil produced per MJ of total fuels consumed. External energy return (EER) ratios, which compare energy produced to energy consumed from external sources, exceed 1000:1 for fields that are largely self-sufficient. The lowest energy returns are found to come from thermally-enhanced oil recovery technologies. Results are generally insensitive to reasonable ranges of assumptions explored in sensitivity analysis. Fields with very large associated gas production are sensitive to assumptions about surface fluids processing due to the shifts in energy consumed under different gas treatment configurations. This model does not currently include energy invested in building oilfield capital equipment (e.g., drilling rigs), nor does it include other indirect energy uses such as labor or services.

Energy Return on Investment (EROI) for Forty Global Oilfields Using a Detailed Engineering-Based Model of Oil Production

PubMed Central

Brandt, Adam R.; Sun, Yuchi; Bharadwaj, Sharad; Livingston, David; Tan, Eugene; Gordon, Deborah

2015-01-01

Studies of the energy return on investment (EROI) for oil production generally rely on aggregated statistics for large regions or countries. In order to better understand the drivers of the energy productivity of oil production, we use a novel approach that applies a detailed field-level engineering model of oil and gas production to estimate energy requirements of drilling, producing, processing, and transporting crude oil. We examine 40 global oilfields, utilizing detailed data for each field from hundreds of technical and scientific data sources. Resulting net energy return (NER) ratios for studied oil fields range from ≈2 to ≈100 MJ crude oil produced per MJ of total fuels consumed. External energy return (EER) ratios, which compare energy produced to energy consumed from external sources, exceed 1000:1 for fields that are largely self-sufficient. The lowest energy returns are found to come from thermally-enhanced oil recovery technologies. Results are generally insensitive to reasonable ranges of assumptions explored in sensitivity analysis. Fields with very large associated gas production are sensitive to assumptions about surface fluids processing due to the shifts in energy consumed under different gas treatment configurations. This model does not currently include energy invested in building oilfield capital equipment (e.g., drilling rigs), nor does it include other indirect energy uses such as labor or services. PMID:26695068

Cryogenic Tank Technology Program (CTTP)

NASA Technical Reports Server (NTRS)

Vaughn, T. P.

2001-01-01

The objectives of the Cryogenic Tank Technology Program were to: (1) determine the feasibility and cost effectiveness of near net shape hardware; (2) demonstrate near net shape processes by fabricating large scale-flight quality hardware; and (3) advance state of current weld processing technologies for aluminum lithium alloys.

Numerical form-finding method for large mesh reflectors with elastic rim trusses

NASA Astrophysics Data System (ADS)

Yang, Dongwu; Zhang, Yiqun; Li, Peng; Du, Jingli

2018-06-01

Traditional methods for designing a mesh reflector usually treat the rim truss as rigid. Due to large aperture, light weight and high accuracy requirements on spaceborne reflectors, the rim truss deformation is indeed not negligible. In order to design a cable net with asymmetric boundaries for the front and rear nets, a cable-net form-finding method is firstly introduced. Then, the form-finding method is embedded into an iterative approach for designing a mesh reflector considering the elasticity of the supporting rim truss. By iterations on form-findings of the cable-net based on the updated boundary conditions due to the rim truss deformation, a mesh reflector with a fairly uniform tension distribution in its equilibrium state could be finally designed. Applications on offset mesh reflectors with both circular and elliptical rim trusses are illustrated. The numerical results show the effectiveness of the proposed approach and that a circular rim truss is more stable than an elliptical rim truss.

MouseNet database: digital management of a large-scale mutagenesis project.

PubMed

Pargent, W; Heffner, S; Schäble, K F; Soewarto, D; Fuchs, H; Hrabé de Angelis, M

2000-07-01

The Munich ENU Mouse Mutagenesis Screen is a large-scale mutant production, phenotyping, and mapping project. It encompasses two animal breeding facilities and a number of screening groups located in the general area of Munich. A central database is required to manage and process the immense amount of data generated by the mutagenesis project. This database, which we named MouseNet(c), runs on a Sybase platform and will finally store and process all data from the entire project. In addition, the system comprises a portfolio of functions needed to support the workflow management of the core facility and the screening groups. MouseNet(c) will make all of the data available to the participating screening groups, and later to the international scientific community. MouseNet(c) will consist of three major software components:* Animal Management System (AMS)* Sample Tracking System (STS)* Result Documentation System (RDS)MouseNet(c) provides the following major advantages:* being accessible from different client platforms via the Internet* being a full-featured multi-user system (including access restriction and data locking mechanisms)* relying on a professional RDBMS (relational database management system) which runs on a UNIX server platform* supplying workflow functions and a variety of plausibility checks.

Temporal variability of air-sea CO2 exchange in a low-emission estuary

NASA Astrophysics Data System (ADS)

Mørk, Eva Thorborg; Sejr, Mikael Kristian; Stæhr, Peter Anton; Sørensen, Lise Lotte

2016-07-01

There is the need for further study of whether global estimates of air-sea CO2 exchange in estuarine systems capture the relevant temporal variability and, as such, the temporal variability of bulk parameterized and directly measured CO2 fluxes was investigated in the Danish estuary, Roskilde Fjord. The air-sea CO2 fluxes showed large temporal variability across seasons and between days and that more than 30% of the net CO2 emission in 2013 was a result of two large fall and winter storms. The diurnal variability of ΔpCO2 was up to 400 during summer changing the estuary from a source to a sink of CO2 within the day. Across seasons the system was suggested to change from a sink of atmospheric CO2 during spring to near neutral during summer and later to a source of atmospheric CO2 during fall. Results indicated that Roskilde Fjord was an annual low-emission estuary, with an estimated bulk parameterized release of 3.9 ± 8.7 mol CO2 m-2 y-1 during 2012-2013. It was suggested that the production-respiration balance leading to the low annual emission in Roskilde Fjord, was caused by the shallow depth, long residence time and high water quality in the estuary. In the data analysis the eddy covariance CO2 flux samples were filtered according to the H2Osbnd CO2 cross-sensitivity assessment suggested by Landwehr et al. (2014). This filtering reduced episodes of contradicting directions between measured and bulk parameterized air-sea CO2 exchanges and changed the net air-sea CO2 exchange from an uptake to a release. The CO2 gas transfer velocity was calculated from directly measured CO2 fluxes and ΔpCO2 and agreed to previous observations and parameterizations.

Cost and cost effectiveness of long-lasting insecticide-treated bed nets - a model-based analysis

PubMed Central

2012-01-01

Background The World Health Organization recommends that national malaria programmes universally distribute long-lasting insecticide-treated bed nets (LLINs). LLINs provide effective insecticide protection for at least three years while conventional nets must be retreated every 6-12 months. LLINs may also promise longer physical durability (lifespan), but at a higher unit price. No prospective data currently available is sufficient to calculate the comparative cost effectiveness of different net types. We thus constructed a model to explore the cost effectiveness of LLINs, asking how a longer lifespan affects the relative cost effectiveness of nets, and if, when and why LLINs might be preferred to conventional insecticide-treated nets. An innovation of our model is that we also considered the replenishment need i.e. loss of nets over time. Methods We modelled the choice of net over a 10-year period to facilitate the comparison of nets with different lifespan (and/or price) and replenishment need over time. Our base case represents a large-scale programme which achieves high coverage and usage throughout the population by distributing either LLINs or conventional nets through existing health services, and retreats a large proportion of conventional nets regularly at low cost. We identified the determinants of bed net programme cost effectiveness and parameter values for usage rate, delivery and retreatment cost from the literature. One-way sensitivity analysis was conducted to explicitly compare the differential effect of changing parameters such as price, lifespan, usage and replenishment need. Results If conventional and long-lasting bed nets have the same physical lifespan (3 years), LLINs are more cost effective unless they are priced at more than USD 1.5 above the price of conventional nets. Because a longer lifespan brings delivery cost savings, each one year increase in lifespan can be accompanied by a USD 1 or more increase in price without the cheaper net (of the same type) becoming more cost effective. Distributing replenishment nets each year in addition to the replacement of all nets every 3-4 years increases the number of under-5 deaths averted by 5-14% at a cost of USD 17-25 per additional person protected per annum or USD 1080-1610 per additional under-5 death averted. Conclusions Our results support the World Health Organization recommendation to distribute only LLINs, while giving guidance on the price thresholds above which this recommendation will no longer hold. Programme planners should be willing to pay a premium for nets which have a longer physical lifespan, and if planners are willing to pay USD 1600 per under-5 death averted, investing in replenishment is cost effective. PMID:22475679

Carbon Emissions from Deforestation in the Brazilian Amazon Region

NASA Technical Reports Server (NTRS)

Potter, C.; Klooster, S.; Genovese, V.

2009-01-01

A simulation model based on satellite observations of monthly vegetation greenness from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate monthly carbon fluxes in terrestrial ecosystems of Brazilian Amazon and Cerrado regions over the period 2000-2002. The NASA-CASA (Carnegie Ames Stanford Approach) model estimates of annual forest production were used for the first time as the basis to generate a prediction for the standing pool of carbon in above-ground biomass (AGB; gC/sq m) for forested areas of the Brazilian Amazon region. Plot-level measurements of the residence time of carbon in wood in Amazon forest from Malhi et al. (2006) were interpolated by inverse distance weighting algorithms and used with CASA to generate a new regional map of AGB. Data from the Brazilian PRODES (Estimativa do Desflorestamento da Amazonia) project were used to map deforested areas. Results show that net primary production (NPP) sinks for carbon varied between 4.25 Pg C/yr (1 Pg=10(exp 15)g) and 4.34 Pg C for the region and were highest across the eastern and northern Amazon areas, whereas deforestation sources of CO2 flux from decomposition of residual woody debris were higher and less seasonal in the central Amazon than in the eastern and southern areas. Increased woody debris from past deforestation events was predicted to alter the net ecosystem carbon balance of the Amazon region to generate annual CO2 source fluxes at least two times higher than previously predicted by CASA modeling studies. Variations in climate, land cover, and forest burning were predicted to release carbon at rates of 0.5 to 1 Pg C/yr from the Brazilian Amazon. When direct deforestation emissions of CO2 from forest burning of between 0.2 and 0.6 Pg C/yr in the Legal Amazon are overlooked in regional budgets, the year-to-year variations in this net biome flux may appear to be large, whereas our model results implies net biome fluxes had actually been relatively consistent from year to year during the period 2000-2002. This is the first study to use MODIS data to model all carbon pools (wood, leaf, root) dynamically in simulations of Amazon forest deforestation from clearing and burning of all kinds.

Anthropogenic Disturbance of Montane Meadows May Cause Substantial Loss of Soil Carbon to the Atmosphere

NASA Astrophysics Data System (ADS)

Reed, C. C.; Sullivan, B. W.; Hart, S. C.; Drew, M.; Merrill, A.

2016-12-01

High-elevation meadows are biological hotspots that contain high densities of soil carbon (C). The capacity of these ecosystems to sequester C depends on a combination of high primary productivity, seasonally low temperatures, and anaerobic soil conditions associated with water tables at or near the soil surface. However, anthropogenic disturbances in many montane meadows in California's Sierra Nevada have lowered water tables, decreased primary productivity, and created aerobic soil conditions - changes that may alter the balance of greenhouse gas (GHG) emissions and reverse meadows from a net C sink to a net source. Recently, C policy in California has spurred interest in the potential of hydrologic restoration to increase C sequestration in meadows. However, soil C pools and fluxes in degraded meadows must be quantified before the impacts of restoration can accurately be assessed. In this study, we measured soil C stocks in surface soil (1 m) and annual soil GHG fluxes (carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O)) in three degraded, northern Sierra Nevada meadows. In a parallel laboratory incubation, we manipulated meadow soil water content to determine target goals for restoration of anaerobic conditions. Our results suggest that degraded meadows contain large reservoirs of existing C, but that this C may be vulnerable to decomposition under current conditions. Soil CO2 fluxes ranged from 26.7-33.1 Mg of CO2 ha-1 y-1, roughly equivalent to the amount of C sequestered annually by 70 acres of U.S. forests. These high rates of soil respiration, combined with low primary productivity, resulted in substantial losses of soil C with implications for climate change, ecosystem function, and restoration. Soils from these meadows were a net source of N2O and a net sink of CH4, but these fluxes were 4 orders of magnitude smaller than CO2. Also, we found substantial GHG emissions persist in these organic soils at peak soil moisture, suggesting that restoration may need to sustain soil water holding capacities in excess of 115%, and possibly 200%, for anaerobic soil conditions to return. These findings highlight the need to conserve properly functioning meadows and provide target conditions for optimal restoration of degraded meadows.

Response of plant community structure and primary productivity to experimental drought and flooding in an Alaskan fen

Treesearch

Amber C. Churchill; Merritt R. Turetsky; A. David McGuire; Teresa N. Hollingsworth

2015-01-01

Northern peatlands represent a long-term net sink for atmospheric CO2, but these ecosystems can shift from net carbon (C) sinks to sources based on changing climate and environmental conditions. In particular, changes in water availability associated with climate control peatland vegetation and carbon uptake processes. We examined the influence of changing hydrology on...

Army Net Zero Prove Out. Net Zero Waster Best Practices

DTIC Science & Technology

2014-11-18

harvested for non-potable uses such as toilet flushing in buildings, cooling towers and irrigation. Implementation of these solutions should not...potable uses such as toilet flushing in buildings, cooling towers and irrigation. Implementation of these solutions should not increase overall...collection of information is estimated to average 1 hour per response, including the time for reviewing instructions, searching existing data sources

Spatial characteristics of net methylmercury production hot spots in peatlands

Treesearch

Carl P.J. Mitchell; Brian A. Branfireun; Randall K. Kolka

2008-01-01

Many wetlands are sources of methylmercury (MeHg) to surface waters, yet little information exists about the distribution of MeHg within wetlands. Total mercury (THg) and MeHg in peat pore waters were studied in four peatlands in spring, summer, and fall 2005. Marked spatial variability in the distribution of MeHg, and %MeHg as a proxy for net MeHg production, was...

Real Time Text Analysis

NASA Astrophysics Data System (ADS)

Senthilkumar, K.; Ruchika Mehra Vijayan, E.

2017-11-01

This paper aims to illustrate real time analysis of large scale data. For practical implementation we are performing sentiment analysis on live Twitter feeds for each individual tweet. To analyze sentiments we will train our data model on sentiWordNet, a polarity assigned wordNet sample by Princeton University. Our main objective will be to efficiency analyze large scale data on the fly using distributed computation. Apache Spark and Apache Hadoop eco system is used as distributed computation platform with Java as development language

Uncertainty in predictions of forest carbon dynamics: separating driver error from model error.

PubMed

Spadavecchia, L; Williams, M; Law, B E

2011-07-01

We present an analysis of the relative magnitude and contribution of parameter and driver uncertainty to the confidence intervals on estimates of net carbon fluxes. Model parameters may be difficult or impractical to measure, while driver fields are rarely complete, with data gaps due to sensor failure and sparse observational networks. Parameters are generally derived through some optimization method, while driver fields may be interpolated from available data sources. For this study, we used data from a young ponderosa pine stand at Metolius, Central Oregon, and a simple daily model of coupled carbon and water fluxes (DALEC). An ensemble of acceptable parameterizations was generated using an ensemble Kalman filter and eddy covariance measurements of net C exchange. Geostatistical simulations generated an ensemble of meteorological driving variables for the site, consistent with the spatiotemporal autocorrelations inherent in the observational data from 13 local weather stations. Simulated meteorological data were propagated through the model to derive the uncertainty on the CO2 flux resultant from driver uncertainty typical of spatially extensive modeling studies. Furthermore, the model uncertainty was partitioned between temperature and precipitation. With at least one meteorological station within 25 km of the study site, driver uncertainty was relatively small ( 10% of the total net flux), while parameterization uncertainty was larger, 50% of the total net flux. The largest source of driver uncertainty was due to temperature (8% of the total flux). The combined effect of parameter and driver uncertainty was 57% of the total net flux. However, when the nearest meteorological station was > 100 km from the study site, uncertainty in net ecosystem exchange (NEE) predictions introduced by meteorological drivers increased by 88%. Precipitation estimates were a larger source of bias in NEE estimates than were temperature estimates, although the biases partly compensated for each other. The time scales on which precipitation errors occurred in the simulations were shorter than the temporal scales over which drought developed in the model, so drought events were reasonably simulated. The approach outlined here provides a means to assess the uncertainty and bias introduced by meteorological drivers in regional-scale ecological forecasting.

The impacts of land reclamation on suspended-sediment dynamics in Jiaozhou Bay, Qingdao, China

NASA Astrophysics Data System (ADS)

Gao, Guan Dong; Wang, Xiao Hua; Bao, Xian Wen; Song, Dehai; Lin, Xiao Pei; Qiao, Lu Lu

2018-06-01

A three-dimensional, high-resolution tidal model coupled with the UNSW sediment model (UNSW-Sed) based on Finite Volume Coastal Ocean Model (FVCOM) was set up to study the suspended-sediment dynamics and its change in Jiaozhou Bay (JZB) due to land reclamation over the period 1935 to 2008. During the past decades, a large amount of tidal flats were lost due to land reclamation. Other than modulating the tides, the tidal flats are a primary source for sediment resuspensions, leading to turbidity maxima nearshore. The tidal dynamics are dominant in controlling the suspended-sediment dynamics in JZB and have experienced significant changes with the loss of tidal flats due to the land reclamation. The sediment model coupled with the tide model was used to investigate the changes in suspended-sediment dynamics due to the land reclamation from 1935 to 2008, including suspended-sediment concentrations (SSC) and the horizontal suspended-sediment fluxes. This model can predict the general patterns of the spatial and temporal variation of SSC. The model was applied to investigate how the net transport of suspended sediments between JZB and its adjacent sea areas changed with land reclamation: in 1935 the net movement of suspended sediments was from JZB to the adjacent sea (erosion for JZB), primarily caused by horizontal advection associated with a horizontal gradient in the SSC; This seaward transport (erosion for JZB) had gradually declined from 1935 to 2008. If land reclamation on a large scale is continued in future, the net transport between JZB and the adjacent sea would turn landward and JZB would switch from erosion to siltation due to the impact of land reclamation on the horizontal advection of suspended sediments. We also evaluate the primary physical mechanisms including advection of suspended sediments, settling lag and tidal asymmetry, which control the suspended-sediment dynamics with the process of land reclamation.

Spatial and seasonal variability of base flow in the Verde Valley, central Arizona, 2007 and 2011

USGS Publications Warehouse

Garner, Bradley D.; Bills, Donald J.

2012-01-01

Synoptic base-flow surveys were conducted on streams in the Verde Valley, central Arizona, in June 2007 and February 2011 by the U.S. Geological Survey (USGS), in cooperation with the Verde River Basin Partnership, the Town of Clarkdale, and Yavapai County. These surveys, also known as seepage runs, measured streamflow under base-flow conditions at many locations over a short period of time. Surveys were conducted on a segment of the Verde River that flows through the Verde Valley, between USGS streamflow-gaging stations 09504000 and 09506000, a distance of 51 river miles. Data from the surveys were used to investigate the dominant controls on Verde River base flow, spatial variability in gaining and losing reaches, and the effects that human alterations have on base flow in the surface-water system. The most prominent human alterations in the Verde Valley are dozens of surface-water diversions from streams, including gravity-fed ditch diversions along the Verde River.Base flow that entered the Verde River from the tributary streams of Oak Creek, Beaver Creek, and West Clear Creek was found to be a major source of base flow in the Verde River. Groundwater discharge directly into the Verde River near these three confluences also was an important contributor of base flow to the Verde River, particularly near the confluence with Beaver Creek. An examination of individual reaches of the Verde River in the Verde Valley found three reaches (largely unaffected by ditch diversions) exhibiting a similar pattern: a small net groundwater discharge in February 2011 (12 cubic feet per second or less) and a small net streamflow loss in June 2007 (11 cubic feet per second or less). Two reaches heavily affected by ditch diversions were difficult to interpret because of the large number of confounding human factors. Possible lower and upper bounds of net groundwater flux were calculated for all reaches, including those heavily affected by ditches.

Partitioning of ocean and land uptake of CO2 as inferred by delta C-13 measurements from the NOAA Climate Monitoring and Diagnostics Laboratory Global Air Sampling Network

NASA Technical Reports Server (NTRS)

Ciais, Philippe; Tans, Pieter P.; White, James W. C.; Trolier, Michael; Francey, Roger J.; Berry, Joe A.; Randall, David R.; Sellers, Piers J.; Collatz, James G.; Schimel, David S.

1995-01-01

Using delta C-13 measurements in atmospheric CO2 from a cooperative global air sampling network, we determined the partitioning of the net uptake of CO2 between ocean and land as a function of latitude and time. The majority of delta C-13 measurements were made at the Institute of Arctic and Alpine Research (INSTAAR) of the University of Colorado. We perform an inverse deconvolution of both CO2 and delta C-13 observations, using a two-dimensional model of atmospheric transport. Also, the discrimination against C-13 by plant photosynthesis, as a function of latitude and time, is calculated from global runs of the simple biosphere (SiB) model. Uncertainty due to the longitudinal structure of the data, which is not represented by the model, is studied through a bootstrap analysis by adding and omitting measurement sites. The resulting error estimates for our inferred sources and sinks are of the order of 1 GTC (1 GTC = 10(exp 15) gC). Such error bars do not reflect potential systematic errors arising from our estimates of the isotopic disequilibria between the atmosphere and the oceans and biosphere, which are estimated in a separate sensitivity analysis. With respect to global totals for 1992 we found that 3.2 GTC of carbon dissolved into the ocean and that 1.5 GTC were sequestered by land ecosystems. Northern hemisphere ocean gyres north of 15 deg N absorbed 2.7 GTC. The equatorial oceans between 10 deg S and 10 deg N were a net source to the atmosphere of 0.9 GTC. We obtained a sink of 1.6 GTC in southern ocean gyres south of 20 deg S, although the deconvolution is poorly constrained by sparse data coverage at high southern latitudes. The seasonal uptake of CO2 in the northern gyres appears to be correlated with a bloom of phytoplankton in surface waters. On land, northern temperate and boreal ecosystems between 35 deg N and 65 deg N were found to be a major sink of CO2 in 1992, as large as 3.5 GTC. Northern tropical ecosystems (equator-30 deg N) appear to be a net source to the source to the atmosphere of 2 GTC which could reflect biomass burning. A small sink, 0.3 GTC, was inferred for southern tropical ecosystems (30 deg S-equator).

The magnetic field structure around protostars. Submillimetre polarimetry of VLA 1623 and S 106-IR/FIR.

NASA Astrophysics Data System (ADS)

Holland, W. S.; Greaves, J. S.; Ward-Thompson, D.; Andre, P.

1996-05-01

We present 800μm polarization observations of the young low-mass candidate protostar VLA 1623, and of the high-mass young stellar object S 106-IR and its companion candidate protostar S 106-FIR. The polarized emission due to aligned dust grains has been used to derive the magnetic field direction around both sources. In the case of VLA 1623 we find that the field direction is almost exactly perpendicular to the extremely well-collimated CO outflow. This suggests that the large-scale magnetic field in the cloud cannot be responsible for the collimation of the outflow. However, the data may be consistent with a recent magneto-hydrodynamic model where the field follows stream lines through the central plane of a `cored apple' accretion structure. In S 106 our observations indicate a magnetic field along the dust lane connecting the IR/FIR sources, and perpendicular to the bipolar HII region. A model consistent both with these data, and previous Zeeman measurements, is presented, in which the large-scale magnetic field is poloidal, but is either twisted into a toroidal morphology, or highly `pinched-in', in the flattened dust lane. We also present a synopsis of recent submillimetre polarimetry observations of young disk/outflow sources. For high-mass objects, the data are consistent with super-critical collapse models, and there is evidence for varying degrees of field compression. There is also a correlation of net field orientation with source distance, which is explained by the inclusion of varying amounts of ambient cloud material within the telescope beam. For the few low-mass objects for which data is available, the polarization is less affected by ambient material, and there is some evidence that different outflow models may apply in different sources.

Options for accounting carbon sequestration in German forests

PubMed Central

Krug, Joachim; Koehl, Michael; Riedel, Thomas; Bormann, Kristin; Rueter, Sebastian; Elsasser, Peter

2009-01-01

Background The Accra climate change talks held from 21–27 August 2008 in Accra, Ghana, were part of an ongoing series of meetings leading up to the Copenhagen meeting in December 2009. During the meeting a set of options for accounting carbon sequestration in forestry on a post-2012 framework was presented. The options include gross-net and net-net accounting and approaches for establishing baselines. Results This article demonstrates the embedded consequences of Accra Accounting Options for the case study of German national GHG accounting. It presents the most current assessment of sequestration rates by forest management for the period 1990 – 2007, provides an outlook of future emissions and removals (up to the year 2042) as related to three different management scenarios, and shows that implementation of some Accra options may reverse sources to sinks, or sinks to sources. Conclusion The results of the study highlight the importance of elaborating an accounting system that would prioritize the climate convention goals, not national preferences. PMID:19650896

PolNet: A Tool to Quantify Network-Level Cell Polarity and Blood Flow in Vascular Remodeling.

PubMed

Bernabeu, Miguel O; Jones, Martin L; Nash, Rupert W; Pezzarossa, Anna; Coveney, Peter V; Gerhardt, Holger; Franco, Claudio A

2018-05-08

In this article, we present PolNet, an open-source software tool for the study of blood flow and cell-level biological activity during vessel morphogenesis. We provide an image acquisition, segmentation, and analysis protocol to quantify endothelial cell polarity in entire in vivo vascular networks. In combination, we use computational fluid dynamics to characterize the hemodynamics of the vascular networks under study. The tool enables, to our knowledge for the first time, a network-level analysis of polarity and flow for individual endothelial cells. To date, PolNet has proven invaluable for the study of endothelial cell polarization and migration during vascular patterning, as demonstrated by two recent publications. Additionally, the tool can be easily extended to correlate blood flow with other experimental observations at the cellular/molecular level. We release the source code of our tool under the Lesser General Public License. Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

International Halley Watch: Discipline specialists for near-nucleus studies

NASA Technical Reports Server (NTRS)

Larson, S.; Sekanina, Z.; Rahe, J.

1986-01-01

The purpose of the Near-Nucleus Studies Net is to study the processes taking place in the near-nucleus environment as they relate to the nature of nucleus. This is accomplisghed by measuring the spatial and temporal distribution of dust, gases and ions in the coma on high resolution images taken from many observatories around the world. By modeling the motions of discrete dust features in Comet Halley, it is often possible to determine the locations of the emission sources on the surface and learn about the nucleus structure. In addition to the general goals shared by all IHW nets, the scientific goals of the net has been to determine (1)the gross surface structure of the nucleus, (2)the nucleus spin vector, (3)the distribution and evolution of jet sources and (4)the interrelationships between the gas, dust and ion components of the coma. An additional Comet Giacobini-Zinner watch was carried out by the NNSN in support of the NASA International Cometary Explorer flyby.

Options for accounting carbon sequestration in German forests.

PubMed

Krug, Joachim; Koehl, Michael; Riedel, Thomas; Bormann, Kristin; Rueter, Sebastian; Elsasser, Peter

2009-08-03

The Accra climate change talks held from 21-27 August 2008 in Accra, Ghana, were part of an ongoing series of meetings leading up to the Copenhagen meeting in December 2009. During the meeting a set of options for accounting carbon sequestration in forestry on a post-2012 framework was presented. The options include gross-net and net-net accounting and approaches for establishing baselines. This article demonstrates the embedded consequences of Accra Accounting Options for the case study of German national GHG accounting. It presents the most current assessment of sequestration rates by forest management for the period 1990 - 2007, provides an outlook of future emissions and removals (up to the year 2042) as related to three different management scenarios, and shows that implementation of some Accra options may reverse sources to sinks, or sinks to sources. The results of the study highlight the importance of elaborating an accounting system that would prioritize the climate convention goals, not national preferences.

Transformations, Inc.: Partnering to Build Net-Zero Energy Houses in Massachusetts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ueno, K.; Bergey, D.; Wytrykowska, H.

Transformations, Inc. is a residential development and building company that has partnered with Building Science Corporation to build new construction net-zero energy houses in Massachusetts under the Building America program. There are three communities that will be constructed through this partnership: Devens Sustainable Housing ('Devens'), The Homes at Easthampton Meadow ('Easthampton') andPhase II of the Coppersmith Way Development ('Townsend'). This report intends to cover all of the single-family new construction homes that have been completed to date. The houses built in these developments are net zero energy homes built in a cold climate. They will contribute to finding answers tomore » specific research questions for homes with high R double stud walls and high efficiency ductlessair source heat pump systems ('mini-splits'); allow to explore topics related to the financing of photovoltaic systems and basements vs. slab-on-grade construction; and provide feedback related to the performance of ductless mini-split air source heat pumps.« less

Transformations, Inc.. Partnering To Build Net-Zero Energy Houses in Massachusetts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ueno, K.; Bergey, D.; Wytrykowska, H.

Transformations, Inc. is a residential development and building company that has partnered with Building Science Corporation to build new construction net-zero energy houses in Massachusetts under the Building America program. There are three communities that will be constructed through this partnership: Devens Sustainable Housing ("Devens"), The Homes at Easthampton Meadow ("Easthampton") and Phase II of the Coppersmith Way Development ("Townsend"). This report intends to cover all of the single-family new construction homes that have been completed to date. The houses built in these developments are net zero energy homes built in a cold climate. They will contribute to finding answersmore » to specific research questions for homes with high R double stud walls and high efficiency ductless air source heat pump systems ("mini-splits"); allow to explore topics related to the financing of photovoltaic systems and basements vs. slab-on-grade construction; and provide feedback related to the performance of ductless mini-split air source heat pumps.« less

Patterns and Trends of Primary Production, Inorganic Carbon and Oxygen and Their Ecosystem Impacts in a Regional Biogeochemical Ocean Model for Atlantic Canada

NASA Astrophysics Data System (ADS)

Fennel, K.; Rutherford, K. E.; Kuhn, A. M.; Zhang, W.; Brennan, C. E.; Zhang, R.

2016-12-01

Representing coastal oceans in global biogeochemical models is a challenge, yet the ecosystems in these regions are most vulnerable to the combined stressors of ocean warming, deoxygenation, acidification, eutrophication and fishing. Coastal regions also have large air-sea fluxes of CO2, making them an important but poorly quantified component of the global carbon cycle, and are the most relevant for human activities. Regional model applications that are nested within large-scale or global models are necessary for detailed studies of coastal regions. We present results from such a regional biogeochemical model for the northwestern North Atlantic shelves and adjacent deep ocean of Atlantic Canada. The model is an implementation of the Regional Ocean Modeling System (ROMS) and includes an NPZD-type nitrogen cycle model with explicit representation of dissolved oxygen and inorganic carbon. The region is at the confluence of the Gulf Stream and Labrador Current making it highly dynamic, a challenge for analysis and prediction, and prone to large changes. Historically a rich fishing ground, coastal ecosystems in Atlantic Canada have undergone dramatic changes including the collapse of several economically important fish stocks and the listing of many species as threatened or endangered. Furthermore it is unclear whether the region is a net source or sink of atmospheric CO2 with estimates of the size and direction of the net air-sea CO2 flux remaining controversial. We will discuss simulated patterns of primary production, inorganic carbon fluxes and oxygen trends in the context of circulation features and shelf residence times for the present ocean state and present future projections.

Using Galaxy to Perform Large-Scale Interactive Data Analyses

PubMed Central

Hillman-Jackson, Jennifer; Clements, Dave; Blankenberg, Daniel; Taylor, James; Nekrutenko, Anton

2012-01-01

Innovations in biomedical research technologies continue to provide experimental biologists with novel and increasingly large genomic and high-throughput data resources to be analyzed. As creating and obtaining data has become easier, the key decision faced by many researchers is a practical one: where and how should an analysis be performed? Datasets are large and analysis tool set-up and use is riddled with complexities outside of the scope of core research activities. The authors believe that Galaxy (galaxyproject.org) provides a powerful solution that simplifies data acquisition and analysis in an intuitive web-application, granting all researchers access to key informatics tools previously only available to computational specialists working in Unix-based environments. We will demonstrate through a series of biomedically relevant protocols how Galaxy specifically brings together 1) data retrieval from public and private sources, for example, UCSC’s Eukaryote and Microbial Genome Browsers (genome.ucsc.edu), 2) custom tools (wrapped Unix functions, format standardization/conversions, interval operations) and 3rd party analysis tools, for example, Bowtie/Tuxedo Suite (bowtie-bio.sourceforge.net), Lastz (www.bx.psu.edu/~rsharris/lastz/), SAMTools (samtools.sourceforge.net), FASTX-toolkit (hannonlab.cshl.edu/fastx_toolkit), and MACS (liulab.dfci.harvard.edu/MACS), and creates results formatted for visualization in tools such as the Galaxy Track Browser (GTB, galaxyproject.org/wiki/Learn/Visualization), UCSC Genome Browser (genome.ucsc.edu), Ensembl (www.ensembl.org), and GeneTrack (genetrack.bx.psu.edu). Galaxy rapidly has become the most popular choice for integrated next generation sequencing (NGS) analytics and collaboration, where users can perform, document, and share complex analysis within a single interface in an unprecedented number of ways. PMID:18428782

Tidal fluxes of mercury and methylmercury for Mendall Marsh, Penobscot River estuary, Maine.

PubMed

Turner, R R; Mitchell, C P J; Kopec, A D; Bodaly, R A

2018-05-08

Tidal marshes are both important sites of in situ methylmercury production and can be landscape sources of methylmercury to adjacent estuarine systems. As part of a regional investigation of the Hg-contaminated Penobscot River and Bay system, the tidal fluxes of total suspended solids, total mercury and methylmercury into and out of a regionally important mesohaline fluvial marsh complex, Mendall Marsh, were intensively measured over several tidal cycles and at two spatial scales to assess the source-sink function of the marsh with respect to the Penobscot River. Over four tidal cycles on the South Marsh River, the main channel through which water enters and exits Mendall Marsh, the marsh was a consistent sink over typical 12-h tidal cycles for total suspended solids (8.2 to 41 g m -2 ), total Hg (9.2 to 47 μg m -2 ), total filter-passing Hg (0.4 to 1.1 μg m -2 ), and total methylmercury (0.2 to 1.4 μg m -2 ). The marsh's source-sink function was variable for filter-passing methylmercury, acting as a net source during a large spring tide that inundated much of the marsh area and that is likely to occur during approximately 17% of tidal cycles. Additional measurements on a small tidal channel draining approximately 1% of the larger marsh area supported findings at the larger scale, but differences in the flux magnitude of filter-passing fractions suggest a highly non-conservative transport of these fractions through the tidal channels. Overall the results of this investigation demonstrate that Mendall Marsh is not a significant source of mercury or methylmercury to the receiving aquatic systems (Penobscot River and Bay). While there is evidence of a small net export of filter-passing (<0.4 μm pore size) methylmercury under some tidal conditions, the mass involved represents <3% of the mass of filter-passing methylmercury carried by the Penobscot River. Copyright © 2018. Published by Elsevier B.V.

Net acidity indicates the whole effluent toxicity of pH and dissolved metals in metalliferous saline waters.

PubMed

Degens, Bradley P; Krassoi, Rick; Galvin, Lynette; Reynolds, Brad; Micevska, Tina

2018-05-01

Measurements of potential acidity in water are used to manage aquatic toxicity risks of discharge from acid sulfate soils or acid mine drainage. Net acidity calculated from pH, dissolved metals and alkalinity is a common measurement of potential acidity but the relevance of current risk thresholds to aquatic organisms are unclear. Aquatic toxicity testing was carried out using four halophytic organisms with water from four saline sources in southern Western Australia (3 acidic drains and one alkaline river; 39-40 g TDS/L) where acidity was varied by adjusting pH to 4.5-6.5. The test species were brine shrimps (Artemia salina), locally sourced ostracods (Platycypris baueri), microalgae (Dunaliella salina) and amphipods (Allorchestes compressa). Testing found the EC 10 and IC 10 of net acidity ranged from -7.8 to 10.5 mg CaCO 3 /L with no survival or growth of any species at >47 mg CaCO 3 /L. Reduced net acidity indicated reduced whole effluent toxicity more reliably than increased pH alone with organisms tolerating pH up to 1.1 units lower in the absence of dissolved metals. Variation in toxicity indicated by net acidity was mostly attributed to reduced concentrations of dissolved Al and Fe combined with higher pH and alkalinity and some changes in speciation of Al and Fe with pH. These results indicate that rapid in-field assessments of net acidity in acidic, Al dominated waters may be an indicator of potential acute and sub-chronic impacts on aquatic organisms. Crown Copyright © 2018. Published by Elsevier Ltd. All rights reserved.

Space geodesy validation of the global lithospheric flow

NASA Astrophysics Data System (ADS)

Crespi, M.; Cuffaro, M.; Doglioni, C.; Giannone, F.; Riguzzi, F.

2007-02-01

Space geodesy data are used to verify whether plates move chaotically or rather follow a sort of tectonic mainstream. While independent lines of geological evidence support the existence of a global ordered flow of plate motions that is westerly polarized, the Terrestrial Reference Frame (TRF) presents limitations in describing absolute plate motions relative to the mantle. For these reasons we jointly estimated a new plate motions model and three different solutions of net lithospheric rotation. Considering the six major plate boundaries and variable source depths of the main Pacific hotspots, we adapted the TRF plate kinematics by global space geodesy to absolute plate motions models with respect to the mantle. All three reconstructions confirm (i) the tectonic mainstream and (ii) the net rotation of the lithosphere. We still do not know the precise trend of this tectonic flow and the velocity of the differential rotation. However, our results show that assuming faster Pacific motions, as the asthenospheric source of the hotspots would allow, the best lithospheric net rotation estimate is 13.4 +/- 0.7 cm yr-1. This superfast solution seems in contradiction with present knowledge on the lithosphere decoupling, but it matches remarkably better with the geological constraints than those retrieved with slower Pacific motion and net rotation estimates. Assuming faster Pacific motion, it is shown that all plates move orderly `westward' along the tectonic mainstream at different velocities and the equator of the lithospheric net rotation lies inside the corresponding tectonic mainstream latitude band (~ +/-7°), defined by the 1σ confidence intervals.

The Contribution of z < or Approx. 6 Sources to the Spatial Coherence in the Unresolved Cosmic Near-Infrared and X-Ray Backgrounds

NASA Technical Reports Server (NTRS)

Helgason, K.; Cappelluti, N.; Hasinger, G.; Kashlinsky, A.; Ricotti, M.

2014-01-01

A spatial clustering signal has been established in Spitzer/IRAC measurements of the unresolved cosmic near-infrared background (CIB) out to large angular scales, approx. 1deg. This CIB signal, while significantly exceeding the contribution from the remaining known galaxies, was further found to be coherent at a highly statistically significant level with the unresolved soft cosmic X-ray background (CXB). This measurement probes the unresolved CXB to very faint source levels using deep near-IR source subtraction.We study contributions from extragalactic populations at low to intermediate redshifts to the measured positive cross-power signal of the CIB fluctuations with the CXB. We model the X-ray emission from active galactic nuclei (AGNs), normal galaxies, and hot gas residing in virialized structures, calculating their CXB contribution including their spatial coherence with all infrared emitting counterparts. We use a halo model framework to calculate the auto and cross-power spectra of the unresolved fluctuations based on the latest constraints of the halo occupation distribution and the biasing of AGNs, galaxies, and diffuse emission. At small angular scales (1), the 4.5microns versus 0.5-2 keV coherence can be explained by shot noise from galaxies and AGNs. However, at large angular scales (approx.10), we find that the net contribution from the modeled populations is only able to account for approx. 3% of the measured CIB×CXB cross-power. The discrepancy suggests that the CIB×CXB signal originates from the same unknown source population producing the CIB clustering signal out to approx. 1deg.

Net production of oxygen in the subtropical ocean.

PubMed

Riser, Stephen C; Johnson, Kenneth S

2008-01-17

The question of whether the plankton communities in low-nutrient regions of the ocean, comprising 80% of the global ocean surface area, are net producers or consumers of oxygen and fixed carbon is a key uncertainty in the global carbon cycle. Direct measurements in bottle experiments indicate net oxygen consumption in the sunlit zone, whereas geochemical evidence suggests that the upper ocean is a net source of oxygen. One possible resolution to this conflict is that primary production in the gyres is episodic and thus difficult to observe: in this model, oligotrophic regions would be net consumers of oxygen during most of the year, but strong, brief events with high primary production rates might produce enough fixed carbon and dissolved oxygen to yield net production as an average over the annual cycle. Here we examine the balance of oxygen production over three years at sites in the North and South Pacific subtropical gyres using the new technique of oxygen sensors deployed on profiling floats. We find that mixing events during early winter homogenize the upper water column and cause low oxygen concentrations. Oxygen then increases below the mixed layer at a nearly constant rate that is similar to independent measures of net community production. This continuous oxygen increase is consistent with an ecosystem that is a net producer of fixed carbon (net autotrophic) throughout the year, with episodic events not required to sustain positive oxygen production.

Peptidylarginine deiminase inhibition is immunomodulatory and vasculoprotective in murine lupus

PubMed Central

Knight, Jason S.; Zhao, Wenpu; Luo, Wei; Subramanian, Venkataraman; O’Dell, Alexander A.; Yalavarthi, Srilakshmi; Hodgin, Jeffrey B.; Eitzman, Daniel T.; Thompson, Paul R.; Kaplan, Mariana J.

2013-01-01

Recent evidence suggests that enhanced neutrophil extracellular trap (NET) formation activates plasmacytoid dendritic cells and serves as a source of autoantigens in SLE. We propose that aberrant NET formation is also linked to organ damage and to the premature vascular disease characteristic of human SLE. Here, we demonstrate enhanced NET formation in the New Zealand mixed 2328 (NZM) model of murine lupus. NZM mice also developed autoantibodies to NETs as well as the ortholog of human cathelicidin/LL37 (CRAMP), a molecule externalized in the NETs. NZM mice were treated with Cl-amidine, an inhibitor of peptidylarginine deiminases (PAD), to block NET formation and were evaluated for lupus-like disease activity, endothelial function, and prothrombotic phenotype. Cl-amidine treatment inhibited NZM NET formation in vivo and significantly altered circulating autoantibody profiles and complement levels while reducing glomerular IgG deposition. Further, Cl-amidine increased the differentiation capacity of bone marrow endothelial progenitor cells, improved endothelium-dependent vasorelaxation, and markedly delayed time to arterial thrombosis induced by photochemical injury. Overall, these findings suggest that PAD inhibition can modulate phenotypes crucial for lupus pathogenesis and disease activity and may represent an important strategy for mitigating cardiovascular risk in lupus patients. PMID:23722903

Greenhouse gas exchange over grazed systems

NASA Astrophysics Data System (ADS)

Felber, R.; Ammann, C.; Neftel, A.

2012-04-01

Grasslands act as sinks and sources of greenhouse gases (GHG) and are, in conjunction with livestock production systems, responsible for a large share of GHG emissions. Whereas ecosystem scale flux measurements (eddy covariance) are commonly used to investigate CO2 exchange (and is becoming state-of-the-art for other GHGs, too), GHG emissions from agricultural animals are usually investigated on the scale of individual animals. Therefore eddy covariance technique has to be tested for combined systems (i.e. grazed systems). Our project investigates the ability of field scale flux measurements to reliably quantify the contribution of grazing dairy cows to the net exchange of CO2 and CH4. To quantify the contribution of the animals to the net flux the position, movement, and grazing/rumination activity of each cow are recorded. In combination with a detailed footprint analysis of the eddy covariance fluxes, the animal related CO2 and CH4 emissions are derived and compared to standard emission values derived from respiration chambers. The aim of the project is to test the assumption whether field scale CO2 flux measurements adequately include the respiration of grazing cows and to identify potential errors in ecosystem Greenhouse gas budgets.

Multi-site assimilation of a terrestrial biosphere model (BETHY) using satellite derived soil moisture data

NASA Astrophysics Data System (ADS)

Wu, Mousong; Sholze, Marko

2017-04-01

We investigated the importance of soil moisture data on assimilation of a terrestrial biosphere model (BETHY) for a long time period from 2010 to 2015. Totally, 101 parameters related to carbon turnover, soil respiration, as well as soil texture were selected for optimization within a carbon cycle data assimilation system (CCDAS). Soil moisture data from Soil Moisture and Ocean Salinity (SMOS) product was derived for 10 sites representing different plant function types (PFTs) as well as different climate zones. Uncertainty of SMOS soil moisture data was also estimated using triple collocation analysis (TCA) method by comparing with ASCAT dataset and BETHY forward simulation results. Assimilation of soil moisture to the system improved soil moisture as well as net primary productivity(NPP) and net ecosystem productivity (NEP) when compared with soil moisture derived from in-situ measurements and fluxnet datasets. Parameter uncertainties were largely reduced relatively to prior values. Using SMOS soil moisture data for assimilation of a terrestrial biosphere model proved to be an efficient approach in reducing uncertainty in ecosystem fluxes simulation. It could be further used in regional an global assimilation work to constrain carbon dioxide concentration simulation by combining with other sources of measurements.

Effects of nutrient loading on the carbon balance of coastal wetland sediments

USGS Publications Warehouse

Morris, J.T.; Bradley, P.M.

1999-01-01

Results of a 12-yr study in an oligotrophic South Carolina salt marsh demonstrate that soil respiration increased by 795 g C m-2 yr-1 and that carbon inventories decreased in sediments fertilized with nitrogen and phosphorus. Fertilized plots became net sources of carbon to the atmosphere, and sediment respiration continues in these plots at an accelerated pace. After 12 yr of treatment, soil macroorganic matter in the top 5 cm of sediment was 475 g C m-2 lower in fertilized plots than in controls, which is equivalent to a constant loss rate of 40 g C m-2 yr-1. It is not known whether soil carbon in fertilized plots has reached a new equilibrium or continues to decline. The increase in soil respiration in the fertilized plots was far greater than the loss of sediment organic matter, which indicates that the increase in soil respiration was largely due to an increase in primary production. Sediment respiration in laboratory incubations also demonstrated positive effects of nutrients. Thus, the results indicate that increased nutrient loading of oligotrophic wetlands can lead to an increased rate of sediment carbon turnover and a net loss of carbon from sediments.

Work Disability Among Native-born and Foreign-born Americans: On Origins, Health, and Social Safety Nets.

PubMed

Engelman, Michal; Kestenbaum, Bert M; Zuelsdorff, Megan L; Mehta, Neil K; Lauderdale, Diane S

2017-12-01

Public debates about both immigration policy and social safety net programs are increasingly contentious. However, little research has explored differences in health within America's diverse population of foreign-born workers, and the effect of these workers on public benefit programs is not well understood. We investigate differences in work disability by nativity and origins and describe the mix of health problems associated with receiving Social Security Disability Insurance benefits. Our analysis draws on two large national data sources-the American Community Survey and comprehensive administrative records from the Social Security Administration-to determine the prevalence and incidence of work disability between 2001 and 2010. In sharp contrast to prior research, we find that foreign-born adults are substantially less likely than native-born Americans to report work disability, to be insured for work disability benefits, and to apply for those benefits. Overall and across origins, the foreign-born also have a lower incidence of disability benefit award. Persons from Africa, Northern Europe, Canada, and parts of Asia have the lowest work disability benefit prevalence rates among the foreign-born; persons from Southern Europe, Western Europe, the former Soviet Union, and the Caribbean have the highest rates.

A business planning model to identify new safety net clinic locations.

PubMed

Langabeer, James; Helton, Jeffrey; DelliFraine, Jami; Dotson, Ebbin; Watts, Carolyn; Love, Karen

2014-01-01

Community health clinics serving the poor and underserved are geographically expanding due to changes in U.S. health care policy. This paper describes the experience of a collaborative alliance of health care providers in a large metropolitan area who develop a conceptual and mathematical decision model to guide decisions on expanding its network of community health clinics. Community stakeholders participated in a collaborative process that defined constructs they deemed important in guiding decisions on the location of community health clinics. This collaboration also defined key variables within each construct. Scores for variables within each construct were then totaled and weighted into a community-specific optimal space planning equation. This analysis relied entirely on secondary data available from published sources. The model built from this collaboration revolved around the constructs of demand, sustainability, and competition. It used publicly available data defining variables within each construct to arrive at an optimal location that maximized demand and sustainability and minimized competition. This is a model that safety net clinic planners and community stakeholders can use to analyze demographic and utilization data to optimize capacity expansion to serve uninsured and Medicaid populations. Communities can use this innovative model to develop a locally relevant clinic location-planning framework.

The GEON Integrated Data Viewer (IDV) and IRIS DMC Services Illustrate CyberInfrastructure Support for Seismic Data Visualization and Interpretation

NASA Astrophysics Data System (ADS)

Meertens, C.; Wier, S.; Ahern, T.; Casey, R.; Weertman, B.; Laughbon, C.

2008-12-01

UNAVCO and the IRIS DMC are data service partners for seismic visualization, particularly for hypocentral data and tomography. UNAVCO provides the GEON Integrated Data Viewer (IDV), an extension of the Unidata IDV, a free, interactive, research-level, software display and analysis tool for data in 3D (latitude, longitude, depth) and 4D (with time), located on or inside the Earth. The GEON IDV is designed to meet the challenge of investigating complex, multi-variate, time-varying, three- dimensional geoscience data in the context of new remote and shared data sources. The GEON IDV supports data access from data sources using HTTP and FTP servers, OPeNDAP servers, THREDDS catalogs, RSS feeds, and WMS (web map) servers. The IRIS DMC (Data Management System) has developed web services providing data for earthquake hypocentral data and seismic tomography model grids. These services can be called by the GEON IDV to access data at IRIS without copying files. The IRIS Earthquake Browser (IEB) is a web-based query tool for hypocentral data. The IEB combines the DMC's large database of more than 1,900,000 earthquakes with the Google Maps web interface. With the IEB you can quickly find earthquakes in any region of the globe and then import this information into the GEON Integrated Data Viewer where the hypocenters may be visualized. You can select earthquakes by location region, time, depth, and magnitude. The IEB gives the IDV a URL to the selected data. The IDV then shows the data as maps or 3D displays, with interactive control of vertical scale, area, map projection, with symbol size and color control by magnitude or depth. The IDV can show progressive time animation of, for example, aftershocks filling a source region. The IRIS Tomoserver converts seismic tomography model output grids to NetCDF for use in the IDV. The Tomoserver accepts a tomographic model file as input from a user and provides an equivalent NetCDF file as output. The service supports NA04, S3D, A1D and CUB input file formats, contributed by their respective creators. The NetCDF file is saved to a location that can be referenced with a URL on an IRIS server. The URL for the NetCDF file is provided to the user. The user can download the data from IRIS, or copy the URL into IDV directly for interpretation, and the IDV will access the data at IRIS. The Tomoserver conversion software was developed by Instrumental Software Technologies, Inc. Use cases with the GEON IDV and IRIS DMC data services will be shown.

Effects of harvest, fire, and pest/pathogen disturbances on the West Cascades ecoregion carbon balance.

PubMed

Turner, David P; Ritts, William D; Kennedy, Robert E; Gray, Andrew N; Yang, Zhiqiang

2015-12-01

Disturbance is a key influence on forest carbon dynamics, but the complexity of spatial and temporal patterns in forest disturbance makes it difficult to quantify their impacts on carbon flux over broad spatial domains. Here we used a time series of Landsat remote sensing images and a climate-driven carbon cycle process model to evaluate carbon fluxes at the ecoregion scale in western Oregon. Thirteen percent of total forest area in the West Cascades ecoregion was disturbed during the reference interval (1991-2010). The disturbance regime was dominated by harvesting (59 % of all area disturbed), with lower levels of fire (23 %), and pest/pathogen mortality (18 %). Ecoregion total Net Ecosystem Production was positive (a carbon sink) in all years, with greater carbon uptake in relatively cool years. Localized carbon source areas were associated with recent harvests and fire. Net Ecosystem Exchange (including direct fire emissions) showed greater interannual variation and became negative (a source) in the highest fire years. Net Ecosystem Carbon Balance (i.e. change in carbon stocks) was more positive on public that private forestland, because of a lower disturbance rate, and more positive in the decade of the 1990s than in the warmer and drier 2000s because of lower net ecosystem production and higher direct fire emissions in the 2000s. Despite recurrent disturbances, the West Cascades ecoregion has maintained a positive carbon balance in recent decades. The high degree of spatial and temporal resolution in these simulations permits improved attribution of regional carbon sources and sinks.

Net returns, fiscal risks, and the optimal patient mix for a profit-maximizing hospital.

PubMed

Ozatalay, S; Broyles, R

1987-10-01

As is well recognized, the provisions of PL98-21 not only transfer financial risks from the Medicare program to the hospital but also induce institutions to adjust the diagnostic mix of Medicare beneficiaries so as to maximize net income or minimize the net loss. This paper employs variation in the set of net returns as the sole measure of financial risk and develops a model that identifies the mix of beneficiaries that maximizes net income, subject to a given level of risk. The results indicate that the provisions of PL98-21 induce the institution to deny admission to elderly patients presenting conditions for which the net return is relatively low and the variance in the cost per case is large. Further, the paper suggests that the treatment of beneficiaries at a level commensurate with previous periods or the preferences of physicians may jeopardize the viability and solvency of Medicare-dependent hospitals.

Biophysical and economic limits to negative CO2 emissions

NASA Astrophysics Data System (ADS)

Smith, Pete; Davis, Steven J.; Creutzig, Felix; Fuss, Sabine; Minx, Jan; Gabrielle, Benoit; Kato, Etsushi; Jackson, Robert B.; Cowie, Annette; Kriegler, Elmar; van Vuuren, Detlef P.; Rogelj, Joeri; Ciais, Philippe; Milne, Jennifer; Canadell, Josep G.; McCollum, David; Peters, Glen; Andrew, Robbie; Krey, Volker; Shrestha, Gyami; Friedlingstein, Pierre; Gasser, Thomas; Grübler, Arnulf; Heidug, Wolfgang K.; Jonas, Matthias; Jones, Chris D.; Kraxner, Florian; Littleton, Emma; Lowe, Jason; Moreira, José Roberto; Nakicenovic, Nebojsa; Obersteiner, Michael; Patwardhan, Anand; Rogner, Mathis; Rubin, Ed; Sharifi, Ayyoob; Torvanger, Asbjørn; Yamagata, Yoshiki; Edmonds, Jae; Yongsung, Cho

2016-01-01

To have a >50% chance of limiting warming below 2 °C, most recent scenarios from integrated assessment models (IAMs) require large-scale deployment of negative emissions technologies (NETs). These are technologies that result in the net removal of greenhouse gases from the atmosphere. We quantify potential global impacts of the different NETs on various factors (such as land, greenhouse gas emissions, water, albedo, nutrients and energy) to determine the biophysical limits to, and economic costs of, their widespread application. Resource implications vary between technologies and need to be satisfactorily addressed if NETs are to have a significant role in achieving climate goals.

Recapture Heterogeneity in Cliff Swallows: Increased Exposure to Mist Nets Leads to Net Avoidance

PubMed Central

Roche, Erin A.; Brown, Charles R.; Brown, Mary Bomberger; Lear, Kristen M.

2013-01-01

Ecologists often use mark-recapture to estimate demographic variables such as abundance, growth rate, or survival for samples of wild animal populations. A common assumption underlying mark-recapture is that all animals have an equal probability of detection, and failure to meet or correct for this assumption–as when certain members of the population are either easier or more difficult to capture than other animals–can lead to biased and inaccurate demographic estimates. We built within-year and among-years Cormack-Jolly-Seber recaptures-only models to identify causes of capture heterogeneity for a population of colonially nesting cliff swallows (Petrochelidon pyrrhonota) caught using mist-netting as a part of a 20-year mark-recapture study in southwestern Nebraska, U.S.A. Daily detection of cliff swallows caught in stationary mist nets at their colony sites declined as the birds got older and as the frequency of netting at a site within a season increased. Experienced birds’ avoidance of the net could be countered by sudden disturbances that startled them into a net, such as when we dropped a net over the side of a bridge or flushed nesting cliff swallows into a stationary net positioned at a colony entrance. Our results support the widely held, but seldom tested, belief that birds learn to avoid stationary mist nets over time, but also show that modifications of traditional field methods can reduce this source of recapture heterogeneity. PMID:23472138

17 CFR 420.2 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-04-01

... circumstances will a large position threshold be less than $2 billion. (e) “Net fails position” is the net par... 17 Commodity and Securities Exchanges 3 2011-04-01 2011-04-01 false Definitions. 420.2 Section 420.2 Commodity and Securities Exchanges DEPARTMENT OF THE TREASURY REGULATIONS UNDER SECTION 15C OF THE...

17 CFR 420.2 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-04-01

... circumstances will a large position threshold be less than $2 billion. (e) “Net fails position” is the net par... 17 Commodity and Securities Exchanges 3 2012-04-01 2012-04-01 false Definitions. 420.2 Section 420.2 Commodity and Securities Exchanges DEPARTMENT OF THE TREASURY REGULATIONS UNDER SECTION 15C OF THE...

17 CFR 420.2 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-04-01

... circumstances will a large position threshold be less than $2 billion. (e) “Net fails position” is the net par... 17 Commodity and Securities Exchanges 4 2014-04-01 2014-04-01 false Definitions. 420.2 Section 420.2 Commodity and Securities Exchanges DEPARTMENT OF THE TREASURY REGULATIONS UNDER SECTION 15C OF THE...

17 CFR 420.2 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-04-01

... circumstances will a large position threshold be less than $2 billion. (e) “Net fails position” is the net par... 17 Commodity and Securities Exchanges 3 2013-04-01 2013-04-01 false Definitions. 420.2 Section 420.2 Commodity and Securities Exchanges DEPARTMENT OF THE TREASURY REGULATIONS UNDER SECTION 15C OF THE...

Benefit-cost assessment of the commercial vehicle information systems and networks (CVISN) in Maryland

DOT National Transportation Integrated Search

1998-11-01

The objective of this study is to answer questions regarding the net benefits of CVISN deployment by the State of Maryland. The hypothesis is that the net benefits of CVISN deployment are positive and large but vary among system components and betwee...

Design and Validation of an Open-Source, Partial Task Trainer for Endonasal Neuro-Endoscopic Skills Development: Indian Experience.

PubMed

Singh, Ramandeep; Baby, Britty; Damodaran, Natesan; Srivastav, Vinkle; Suri, Ashish; Banerjee, Subhashis; Kumar, Subodh; Kalra, Prem; Prasad, Sanjiva; Paul, Kolin; Anand, Sneh; Kumar, Sanjeev; Dhiman, Varun; Ben-Israel, David; Kapoor, Kulwant Singh

2016-02-01

Box trainers are ideal simulators, given they are inexpensive, accessible, and use appropriate fidelity. The development and validation of an open-source, partial task simulator that teaches the fundamental skills necessary for endonasal skull-base neuro-endoscopic surgery. We defined the Neuro-Endo-Trainer (NET) SkullBase-Task-GraspPickPlace with an activity area by analyzing the computed tomography scans of 15 adult patients with sellar suprasellar parasellar tumors. Four groups of participants (Group E, n = 4: expert neuroendoscopists; Group N, n =19: novice neurosurgeons; Group R, n = 11: neurosurgery residents with multiple iterations; and Group T, n = 27: neurosurgery residents with single iteration) performed grasp, pick, and place tasks using NET and were graded on task completion time and skills assessment scale score. Group E had lower task completion times and greater skills assessment scale scores than both Group N and R (P ≤ 0.03, 0.001). The performance of Groups N and R was found to be equivalent; in self-assessing neuro-endoscopic skill, the participants in these groups were found to have equally low pretraining scores (4/10) with significant improvement shown after NET simulation (6, 7 respectively). Angled scopes resulted in decreased scores with tilted plates compared with straight plates (30° P ≤ 0.04, 45° P ≤ 0.001). With tilted plates, decreased scores were observed when we compared the 0° with 45° endoscope (right, P ≤ 0.008; left, P ≤ 0.002). The NET, a face and construct valid open-source partial task neuroendoscopic trainer, was designed. Presimulation novice neurosurgeons and neurosurgical residents were described as having insufficient skills and preparation to practice neuro-endoscopy. Plate tilt and endoscope angle were shown to be important factors in participant performance. The NET was found to be a useful partial-task trainer for skill building in neuro-endoscopy. Copyright © 2016 Elsevier Inc. All rights reserved.

ScaleNet: a literature-based model of scale insect biology and systematics

PubMed Central

García Morales, Mayrolin; Denno, Barbara D.; Miller, Douglass R.; Miller, Gary L.; Ben-Dov, Yair; Hardy, Nate B.

2016-01-01

Scale insects (Hemiptera: Coccoidea) are small herbivorous insects found on all continents except Antarctica. They are extremely invasive, and many species are serious agricultural pests. They are also emerging models for studies of the evolution of genetic systems, endosymbiosis and plant-insect interactions. ScaleNet was launched in 1995 to provide insect identifiers, pest managers, insect systematists, evolutionary biologists and ecologists efficient access to information about scale insect biological diversity. It provides comprehensive information on scale insects taken directly from the primary literature. Currently, it draws from 23 477 articles and describes the systematics and biology of 8194 valid species. For 20 years, ScaleNet ran on the same software platform. That platform is no longer viable. Here, we present a new, open-source implementation of ScaleNet. We have normalized the data model, begun the process of correcting invalid data, upgraded the user interface, and added online administrative tools. These improvements make ScaleNet easier to use and maintain and make the ScaleNet data more accurate and extendable. Database URL: http://scalenet.info PMID:26861659

DNA Is an Antimicrobial Component of Neutrophil Extracellular Traps

PubMed Central

Halverson, Tyler W.R.; Wilton, Mike; Poon, Karen K. H.; Petri, Björn; Lewenza, Shawn

2015-01-01

Neutrophil extracellular traps (NETs) comprise an ejected lattice of chromatin enmeshed with granular and nuclear proteins that are capable of capturing and killing microbial invaders. Although widely employed to combat infection, the antimicrobial mechanism of NETs remains enigmatic. Efforts to elucidate the bactericidal component of NETs have focused on the role of NET-bound proteins including histones, calprotectin and cathepsin G protease; however, exogenous and microbial derived deoxyribonuclease (DNase) remains the most potent inhibitor of NET function. DNA possesses a rapid bactericidal activity due to its ability to sequester surface bound cations, disrupt membrane integrity and lyse bacterial cells. Here we demonstrate that direct contact and the phosphodiester backbone are required for the cation chelating, antimicrobial property of DNA. By treating NETs with excess cations or phosphatase enzyme, the antimicrobial activity of NETs is neutralized, but NET structure, including the localization and function of NET-bound proteins, is maintained. Using intravital microscopy, we visualized NET-like structures in the skin of a mouse during infection with Pseudomonas aeruginosa. Relative to other bacteria, P. aeruginosa is a weak inducer of NETosis and is more resistant to NETs. During NET exposure, we demonstrate that P. aeruginosa responds by inducing the expression of surface modifications to defend against DNA-induced membrane destabilization and NET-mediated killing. Further, we show induction of this bacterial response to NETs is largely due to the bacterial detection of DNA. Therefore, we conclude that the DNA backbone contributes both to the antibacterial nature of NETs and as a signal perceived by microbes to elicit host-resistance strategies. PMID:25590621

Land Use Effects on Atmospheric C-13 Imply a Sizable Terrestrial CO2 Sink in Tropical Latitudes

NASA Technical Reports Server (NTRS)

Townsend, Alan R.; Asner, Gregory P.; Tans, Pieter P.; White, James W. C.

2000-01-01

Records of atmospheric CO2 and 13-CO2, can be used to distinguish terrestrial vs. oceanic exchanges of CO2 with the atmosphere. However, this approach has proven difficult in the tropics, partly due to extensive land conversion from C-3 to C-4 vegetation. We estimated the effects of such conversion on biosphere-atmosphere C-13 exchange for 1991 through 1999, and then explored how this 'land-use disequilibrium' altered the partitioning of net atmospheric CO2 exchanges between ocean and land using NOAA-CMDL data and a 2D, zonally averaged atmospheric transport model. Our results show sizable CO2 uptake in C-3-dominated tropical regions in seven of the nine years; 1997 and 1998, which included a strong ENSO event, are near neutral. Since these fluxes include any deforestation source, our findings imply either that such sources are smaller than previously estimated, and/or the existence of a large terrestrial CO2 sink in equatorial latitudes.

NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference.

PubMed

Bellot, Pau; Olsen, Catharina; Salembier, Philippe; Oliveras-Vergés, Albert; Meyer, Patrick E

2015-09-29

In the last decade, a great number of methods for reconstructing gene regulatory networks from expression data have been proposed. However, very few tools and datasets allow to evaluate accurately and reproducibly those methods. Hence, we propose here a new tool, able to perform a systematic, yet fully reproducible, evaluation of transcriptional network inference methods. Our open-source and freely available Bioconductor package aggregates a large set of tools to assess the robustness of network inference algorithms against different simulators, topologies, sample sizes and noise intensities. The benchmarking framework that uses various datasets highlights the specialization of some methods toward network types and data. As a result, it is possible to identify the techniques that have broad overall performances.

Visualization of Neutrophil Extracellular Traps and Fibrin Meshwork in Human Fibrinopurulent Inflammatory Lesions: II. Ultrastructural Study

PubMed Central

Onouchi, Takanori; Shiogama, Kazuya; Matsui, Takahiro; Mizutani, Yasuyoshi; Sakurai, Kouhei; Inada, Ken-ichi; Tsutsumi, Yutaka

2016-01-01

Neutrophil extracellular traps (NETs) represent an extracellular, spider’s web-like structure resulting from cell death of neutrophils. NETs play an important role in innate immunity against microbial infection, but their roles in human pathological processes remain largely unknown. NETs and fibrin meshwork both showing fibrillar structures are observed at the site of fibrinopurulent inflammation, as described in our sister paper [Acta Histochem. Cytochem. 49; 109–116, 2016]. In the present study, immunoelectron microscopic study was performed for visualizing NETs and fibrin fibrils (thick fibrils in our tongue) in formalin-fixed, paraffin-embedded sections of autopsied lung tissue of legionnaire’s pneumonia. Lactoferrin and fibrinogen gamma chain were utilized as markers of NETs and fibrin, respectively. Analysis of immuno-scanning electron microscopy indicated that NETs constructed thin fibrils and granular materials were attached onto the NETs fibrils. The smooth-surfaced fibrin fibrils were much thicker than the NETs fibrils. Pre-embedding immunoelectron microscopy demonstrated that lactoferrin immunoreactivities were visible as dots on the fibrils, whereas fibrinogen gamma chain immunoreactivities were homogeneously observed throughout the fibrils. Usefulness of immunoelectron microscopic analysis of NETs and fibrin fibrils should be emphasized. PMID:27682015

A compact electron cyclotron resonance proton source for the Paul Scherrer Institute's proton accelerator facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baumgarten, C.; Barchetti, A.; Einenkel, H.

2011-05-15

A compact electron cyclotron resonance proton source has been developed and installed recently at thePaul Scherrer Institute's high intensity proton accelerator. Operation at the ion source test stand and the accelerator demonstrates a high reliability and stability of the new source. When operated at a 10 - 12 mA net proton current the lifetime of the source exceeds 2000 h. The essential development steps towards the observed performance are described.

Army Net Zero Prove Out. Net Zero Energy Best Practices

DTIC Science & Technology

2014-11-18

energy which is then used to drive a heat engine to generate electrical power. Geothermal Power – These systems use thermal energy generated and...stored in the earth as a generating source for electricity. Several pilot installations are investigating this technology by conducting geothermal ...concentrate solar thermal energy which is then used to drive a heat engine to generate electrical power. • Geothermal Power - These systems use thermal energy

An Extensible NetLogo Model for Visualizing Message Routing Protocols

DTIC Science & Technology

2017-08-01

the hard sciences to the social sciences to computer-generated art. NetLogo represents the world as a set of...describe the model is shown here; for the supporting methods , refer to the source code. Approved for public release; distribution is unlimited. 4 iv...if ticks - last-inject > time-to-inject [inject] if run# > #runs [stop] end Next, we present some basic statistics collected for the

The Virtual Collaboration Environment: New Media for Crisis Response

DTIC Science & Technology

2011-05-01

openvce.net/forum-alternative-platforms and http://openvce.net/more), the open-source Drupal ®-based Proceedings of the 8th International ISCRAM... Drupal is a widely used modular content management system, with an active development community of its own. It provides a user management system and...authoring text documents (a facility felt to be lacking at the time in Drupal ). This wiki feature has itself been supplemented with experimental

Hospital-based financial analysis of endovascular therapy and intravenous thrombolysis for large vessel acute ischemic strokes: the 'bottom line'.

PubMed

Rai, Ansaar T; Evans, Kim

2015-02-01

Economic viability is important to any hospital striving to be a comprehensive stroke center. An inability to recover cost can strain sustained delivery of advanced stroke care. To carry out a comparative financial analysis of intravenous (IV) recombinant tissue plasminogen activator and endovascular (EV) therapy in treating large vessel strokes from a hospital's perspective. Actual hospital's charges, costs, and payments were analyzed for 265 patients who received treatment for large vessel strokes. The patients were divided into an EV (n=141) and an IV group (n=124). The net gain/loss was calculated as the difference between payments received and the total cost. The charges, costs, and payments were significantly higher for the EV than the IV group (p<0.0001 for all). Medicare A was the main payer. Length of stay was inversely related to net gain/loss (p<0.0001). Favorable outcome was associated with a net gain of $3853 (±$21,155) and poor outcome with a net deficit of $2906 (±$15,088) (p=0.003). The hospital showed a net gain for the EV group versus a net deficit for the IV group in patients who survived the admission (p=0.04), had a favorable outcome (p=0.1), or were discharged to home (p=0.03). There was no difference in the time in hospital based on in-hospital mortality for the EV group but patients who died in the IV group had a significantly shorter length of stay than those who survived (p=0.04). The favorable outcome of 42.3% in the EV group was significantly higher than the 29.4% in the IV group (p=0.03). Endovascular therapy was associated with better outcomes and higher cost-recovery than IV thrombolysis in patients with large vessel strokes. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

26 CFR 1.737-3 - Basis adjustments; Recovery rules.

Code of Federal Regulations, 2012 CFR

2012-04-01

... Properties A1, A2, and A3 is long-term, U.S.-source capital gain or loss. The character of gain on Property A4 is long-term, foreign-source capital gain. B contributes Property B, nondepreciable real property...-term, foreign-source capital gain ($3,000 total gain under section 737 × $2,000 net long-term, foreign...

26 CFR 1.737-3 - Basis adjustments; Recovery rules.

Code of Federal Regulations, 2013 CFR

2013-04-01

... Properties A1, A2, and A3 is long-term, U.S.-source capital gain or loss. The character of gain on Property A4 is long-term, foreign-source capital gain. B contributes Property B, nondepreciable real property...-term, foreign-source capital gain ($3,000 total gain under section 737 × $2,000 net long-term, foreign...

26 CFR 1.737-3 - Basis adjustments; Recovery rules.

Code of Federal Regulations, 2011 CFR

2011-04-01

... Properties A1, A2, and A3 is long-term, U.S.-source capital gain or loss. The character of gain on Property A4 is long-term, foreign-source capital gain. B contributes Property B, nondepreciable real property...-term, foreign-source capital gain ($3,000 total gain under section 737 × $2,000 net long-term, foreign...

26 CFR 1.737-3 - Basis adjustments; Recovery rules.

Code of Federal Regulations, 2014 CFR

2014-04-01

... Properties A1, A2, and A3 is long-term, U.S.-source capital gain or loss. The character of gain on Property A4 is long-term, foreign-source capital gain. B contributes Property B, nondepreciable real property...-term, foreign-source capital gain ($3,000 total gain under section 737 × $2,000 net long-term, foreign...

26 CFR 1.737-3 - Basis adjustments; Recovery rules.

Code of Federal Regulations, 2010 CFR

2010-04-01

... Properties A1, A2, and A3 is long-term, U.S.-source capital gain or loss. The character of gain on Property A4 is long-term, foreign-source capital gain. B contributes Property B, nondepreciable real property...-term, foreign-source capital gain ($3,000 total gain under section 737 × $2,000 net long-term, foreign...

26 CFR 1.904(b)-1 - Special rules for capital gains and losses.

Code of Federal Regulations, 2011 CFR

2011-04-01

... in the passive category, and a $2,000 capital loss from sources within the United States. A's capital... sources outside the United States in the passive category by $2,000 ($3,000 of capital gain net income... adjustment, A has $4,000 of capital gain from sources outside the United States in the passive category and...

26 CFR 1.904(b)-1 - Special rules for capital gains and losses.

Code of Federal Regulations, 2010 CFR

2010-04-01

... in the passive category, and a $2,000 capital loss from sources within the United States. A's capital... sources outside the United States in the passive category by $2,000 ($3,000 of capital gain net income... adjustment, A has $4,000 of capital gain from sources outside the United States in the passive category and...

Pollutant Transport and Fate: Relations Between Flow-paths and Downstream Impacts of Human Activities

NASA Astrophysics Data System (ADS)

Thorslund, J.; Jarsjo, J.; Destouni, G.

2017-12-01

The quality of freshwater resources is increasingly impacted by human activities. Humans also extensively change the structure of landscapes, which may alter natural hydrological processes. To manage and maintain freshwater of good water quality, it is critical to understand how pollutants are released into, transported and transformed within the hydrological system. Some key scientific questions include: What are net downstream impacts of pollutants across different hydroclimatic and human disturbance conditions, and on different scales? What are the functions within and between components of the landscape, such as wetlands, on mitigating pollutant load delivery to downstream recipients? We explore these questions by synthesizing results from several relevant case study examples of intensely human-impacted hydrological systems. These case study sites have been specifically evaluated in terms of net impact of human activities on pollutant input to the aquatic system, as well as flow-path distributions trough wetlands as a potential ecosystem service of pollutant mitigation. Results shows that although individual wetlands have high retention capacity, efficient net retention effects were not always achieved at a larger landscape scale. Evidence suggests that the function of wetlands as mitigation solutions to pollutant loads is largely controlled by large-scale parallel and circular flow-paths, through which multiple wetlands are interconnected in the landscape. To achieve net mitigation effects at large scale, a large fraction of the polluted large-scale flows must be transported through multiple connected wetlands. Although such large-scale flow interactions are critical for assessing water pollution spreading and fate through the landscape, our synthesis shows a frequent lack of knowledge at such scales. We suggest ways forward for addressing the mismatch between the large scales at which key pollutant pressures and water quality changes take place and the relatively scale at which most studies and implementations are currently made. These suggestions can help bridge critical knowledge gaps, as needed for improving water quality predictions and mitigation solutions under human and environmental changes.

SpectralNET – an application for spectral graph analysis and visualization

PubMed Central

Forman, Joshua J; Clemons, Paul A; Schreiber, Stuart L; Haggarty, Stephen J

2005-01-01

Background Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks of genes, proteins, small molecules, or other objects of study can be represented as graphs of nodes (vertices) and interactions (edges) that can carry different weights. SpectralNET is a flexible application for analyzing and visualizing these biological and chemical networks. Results Available both as a standalone .NET executable and as an ASP.NET web application, SpectralNET was designed specifically with the analysis of graph-theoretic metrics in mind, a computational task not easily accessible using currently available applications. Users can choose either to upload a network for analysis using a variety of input formats, or to have SpectralNET generate an idealized random network for comparison to a real-world dataset. Whichever graph-generation method is used, SpectralNET displays detailed information about each connected component of the graph, including graphs of degree distribution, clustering coefficient by degree, and average distance by degree. In addition, extensive information about the selected vertex is shown, including degree, clustering coefficient, various distance metrics, and the corresponding components of the adjacency, Laplacian, and normalized Laplacian eigenvectors. SpectralNET also displays several graph visualizations, including a linear dimensionality reduction for uploaded datasets (Principal Components Analysis) and a non-linear dimensionality reduction that provides an elegant view of global graph structure (Laplacian eigenvectors). Conclusion SpectralNET provides an easily accessible means of analyzing graph-theoretic metrics for data modeling and dimensionality reduction. SpectralNET is publicly available as both a .NET application and an ASP.NET web application from . Source code is available upon request. PMID:16236170

SpectralNET--an application for spectral graph analysis and visualization.

PubMed

Forman, Joshua J; Clemons, Paul A; Schreiber, Stuart L; Haggarty, Stephen J

2005-10-19

Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks of genes, proteins, small molecules, or other objects of study can be represented as graphs of nodes (vertices) and interactions (edges) that can carry different weights. SpectralNET is a flexible application for analyzing and visualizing these biological and chemical networks. Available both as a standalone .NET executable and as an ASP.NET web application, SpectralNET was designed specifically with the analysis of graph-theoretic metrics in mind, a computational task not easily accessible using currently available applications. Users can choose either to upload a network for analysis using a variety of input formats, or to have SpectralNET generate an idealized random network for comparison to a real-world dataset. Whichever graph-generation method is used, SpectralNET displays detailed information about each connected component of the graph, including graphs of degree distribution, clustering coefficient by degree, and average distance by degree. In addition, extensive information about the selected vertex is shown, including degree, clustering coefficient, various distance metrics, and the corresponding components of the adjacency, Laplacian, and normalized Laplacian eigenvectors. SpectralNET also displays several graph visualizations, including a linear dimensionality reduction for uploaded datasets (Principal Components Analysis) and a non-linear dimensionality reduction that provides an elegant view of global graph structure (Laplacian eigenvectors). SpectralNET provides an easily accessible means of analyzing graph-theoretic metrics for data modeling and dimensionality reduction. SpectralNET is publicly available as both a .NET application and an ASP.NET web application from http://chembank.broad.harvard.edu/resources/. Source code is available upon request.

Life cycle analysis of switchgrass converted via pyrolysis, gasification, and fermentation

USDA-ARS?s Scientific Manuscript database

The US is promoting and developing low carbon fuel sources. Perennial bioenergy crops such as switchgrass (Panicum virgatum L.) are one viable source for low carbon transportation fuels. The objective is to determine the net greenhouse gas (GHG) emissions from different conversion methods (pyrolysi...

Comparison of copepod collection efficiencies by three commonly used plankton nets: A case study in Bohai Sea, China

NASA Astrophysics Data System (ADS)

Chen, Hongju; Yu, Hao; Liu, Guangxing

2016-12-01

Selection of net with a suitable mesh size is a key concern in the quantitative assessment of zooplankton, which is crucial to understand pelagic ecosystem processes. This study compared the copepod collecting efficiency of three commonly used plankton nets, namely, the China standard coarse net (505 μm mesh), the China standard fine net (77 μm), and the WP-2 net (200 μm). The experiment was performed at six stations in the Bohai Sea during the autumn of 2012. The coarse net substantially under-sampled small individuals (body widths < 672 μm) and led to the lowest species number in each tow, whereas the fine net collected all small copepod species but failed to collect rare species. The WP-2 net appeared to be a compromise of the two other nets, collecting both small copepods and rare species. The abundance of copepods collected by the coarse net (126.4 ± 86.5 ind m-3) was one to two orders of magnitude lower than that by the WP-2 net (5802.4 ± 2595.4 ind m-3), and the value of the fine net (11117.0 ± 4563.41 ind m-3) was nearly twice that of the WP-2 net. The abundance of large copepods ( i.e., adult Calanus sinicus) in the three nets showed no significant differences, but the abundance of small copepods declined with decreasing mesh size. The difference in abundance resulted from the under-sampling of small copepods with body widths < 672 μm and < 266 μm by the coarse and WP-2 nets, respectively.

Annual measurements of gain and loss in aboveground carbon density

NASA Astrophysics Data System (ADS)

Baccini, A.; Walker, W. S.; Carvalho, L.; Farina, M.; Sulla-menashe, D. J.; Houghton, R. A.

2017-12-01

Tropical forests hold large stores of carbon, but their net carbon balance is uncertain. Land use and land-cover change (LULCC) are believed to release between 0.81 and 1.14 PgC yr-1, while intact native forests are thought to be a net carbon sink of approximately the same magnitude. Reducing the uncertainty of these estimates is not only fundamental to the advancement of carbon cycle science but is also of increasing relevance to national and international policies designed to reduce emissions from deforestation and forest degradation (e.g., REDD+). Contemporary approaches to estimating the net carbon balance of tropical forests rely on changes in forest area between two periods, typically derived from satellite data, together with information on average biomass density. These approaches tend to capture losses in biomass due to deforestation (i.e., wholesale stand removals) but are limited in their sensitivity to forest degradation (e.g., selective logging or single-tree removals), which can account for additional biomass losses on the order of 47-75% of deforestation. Furthermore, while satellite-based estimates of forest area loss have been used successfully to estimate associated carbon losses, few such analyses have endeavored to determine the rate of carbon sequestration in growing forests. Here we use 12 years (2003-2014) of pantropical satellite data to quantify net annual changes in the aboveground carbon density of woody vegetation (MgC ha-1yr-1), providing direct, measurement-based evidence that the world's tropical forests are a net carbon source of 425.2 ± 92.0 Tg C yr-1. This net release of carbon consists of losses of 861.7 ± 80.2 Tg C yr-1 and gains of -436.5 ± 31.0 Tg C yr-1 . Gains result from forest growth; losses result from reductions in forest area due to deforestation and from reductions in biomass density within standing forests (degradation), with the latter accounting for 68.9% of overall losses. Our findings advance previous research by providing novel, annual measurements of carbon losses and gains, from forest loss, degradation, and growth, with reduced uncertainty that stems from an unconventional shift in emphasis away from classifications of land area change toward direct estimation of carbon density dynamics.

Black–White Disparities in Criminal Justice Referrals to Drug Treatment: Addressing Treatment Need or Expanding the Diagnostic Net?

PubMed Central

McElrath, Karen; Taylor, Angela; Tran, Kimberly K.

2016-01-01

Slightly more than half of admissions to U.S. publicly-funded treatment for marijuana use are referred by the criminal justice system; this pattern has remained for at least 20 years. Nationally, Blacks comprise nearly a third of treatment admissions for marijuana use. This article explores the interplay between race and criminal justice referrals to treatment for marijuana use. Using data from the (U.S.) 2011 Treatment Episode Data Set, we examine the relationship between race and diagnosis of cannabis use disorder (dependence versus abuse) among referrals to community-based treatment in North Carolina. We compare Black/White differences in cannabis diagnoses across four referral sources: the criminal justice system, healthcare providers, self, and other sources. Race was significantly related to type of diagnosis across all four referral sources, however, the nature of the relationship was distinctly different among criminal justice referrals with Whites being more likely than Blacks to be diagnosed with cannabis dependence. Moreover, the marijuana use profiles of criminal justice referrals differed substantially from individuals referred by other sources. The findings suggest that diagnoses of cannabis abuse (rather than dependence) may have worked to widen the diagnostic net by “capturing” individuals under control of the criminal justice system who manifested few problems with marijuana use, other than their involvement in the criminal justice system. The potential for a net-widening effect appeared to be most pronounced for Blacks. PMID:27706092

Impact of Icebergs on Net Primary Productivity in the Southern Ocean

NASA Astrophysics Data System (ADS)

Wu, Shuang-Ye; Hou, Shugui

2017-04-01

Productivity in the Southern Ocean (SO) is iron-limited, and supply of iron dissolved from aeolian dust is believed to be the main source from outside the marine environment. However, recent studies show that icebergs could provide comparable amount of bioavailable iron to the SO as aeolian dust. In addition, small scale areal studies suggest increased concentrations of chlorophyll, krill, and seabirds surrounding icebergs. Based on previous research, this study aims to examine whether iceberg occurrence has a significant impact on marine productivity at the scale of the SO, using remote sensing data of iceberg occurrences and ocean net primary productivity (NPP) covering the period 2002-2014. The impacts of both large and small icebergs are examined in four major ecological zones of the SO: the continental shelf zone (CSZ), the seasonal ice zone (SIZ), the permanent open ocean zone (POOZ) and the polar front zone (PFZ). We found that both large and small icebergs have an observable positive impact on NPP, but their impacts vary in different zones. Small icebergs on average increase NPP in most iron deficient zones: by 21% for the SIZ, 16% for the POOZ, and 12% for the PFZ, but have relatively small effect in the CSZ where iron is supplied from melt water and sediment input from the continent. Large icebergs on average increase the NPP by about 10%. Their impacts are stronger at higher latitudes, where they are more concentrated. From 1992-2014, there is a significant increasing trend for both small and large icebergs. The increase was most rapid in the early 2000s, and has levelled off since then. As the climate continues to warm, the Antarctic Ice Sheet is expected to experience increased mass loss as a whole, which could lead to more icebergs in the region. Based on our study, this could result in higher level of NPP in the SO as a whole, providing a negative feedback for global warming.

Soil Organic Carbon and Below Ground Biomass: Development of New GLOBE Special Measurements

NASA Technical Reports Server (NTRS)

Levine, Elissa; Haskett, Jonathan

1999-01-01

A scientific consensus is building that changes in the atmospheric concentrations of radiatively active gases are changing the climate (IPCC, 1990). One of these gases CO2 has been increasing in concentration due to additions from anthropogenic sources that are primarily industrial and land use related. The soil contains a very large pool of carbon, estimated at 1550 Gt (Lal 1995) which is larger than the atmospheric and biosphere pools of carbon combined (Greenland, 1995). The flux between the soil and the atmosphere is very large, 60 Pg C/yr (Lal 1997), and is especially important because the soil can act as either a source or a sink for carbon. On any given landscape, as much as 50% of the biomass that provides the major source of carbon can be below ground. In addition, the movement of carbon in and out of the soil is mediated by the living organisms. At present, there is no widespread sampling of soil biomass in any consistent or coordinated manner. Current large scale estimates of soil carbon are limited by the number and widely dispersed nature of the data points available. A measurement of the amount of carbon in the soil would supplement existing carbon data bases as well as provide a benchmark that can be used to determine whether the soil is storing carbon or releasing it to the atmosphere. Information on the below ground biomass would be a valuable addition to our understanding of net primary productivity and standing biomass. The addition of these as special measurements within GLOBE would be unique in terms of areal extent and continuity, and make a real contribution to scientific understanding of carbon dynamics.

The parametrization of radio source coordinates in VLBI and its impact on the CRF

NASA Astrophysics Data System (ADS)

Karbon, Maria; Heinkelmann, Robert; Mora-Diaz, Julian; Xu, Minghui; Nilsson, Tobias; Schuh, Harald

2016-04-01

Usually celestial radio sources in the celestial reference frame (CRF) catalog are divided in three categories: defining, special handling, and others. The defining sources are those used for the datum realization of the celestial reference frame, i.e. they are included in the No-Net-Rotation (NNR) constraints to maintain the axis orientation of the CRF, and are modeled with one set of totally constant coordinates. At the current level of precision, the choice of the defining sources has a significant effect on the coordinates. For the ICRF2 295 sources were chosen as defining sources, based on their geometrical distribution, statistical properties, and stability. The number of defining sources is a compromise between the reliability of the datum, which increases with the number of sources, and the noise which is introduced by each source. Thus, the optimal number of defining sources is a trade-off between reliability, geometry, and precision. In the ICRF2 only 39 of sources were sorted into the special handling group as they show large fluctuations in their position, therefore they are excluded from the NNR conditions and their positions are normally estimated for each VLBI session instead of as global parameters. All the remaining sources are classified as others. However, a large fraction of these unstable sources show other favorable characteristics, e.g. large flux density (brightness) and a long history of observations. Thus, it would prove advantageous including these sources into the NNR condition. However, the instability of these objects inhibit this. If the coordinate model of these sources would be extended, it would be possible to use these sources for the NNR condition as well. All other sources are placed in the "others" group. This is the largest group of sources, containing those which have not shown any very problematic behavior, but still do not fulfill the requirements for defining sources. Studies show that the behavior of each source can vary dramatically in time. Hence, each source would have to be modeled individually. Considering this, the shear amount of sources, in our study more than 600 are included, sets practical limitations. We decided to use the multivariate adaptive regression splines (MARS) procedure to parametrize the source coordinates, as they allow a great deal of automation as it combines recursive partitioning and spline fitting in an optimal way. The algorithm finds the ideal knot positions for the splines and thus the best number of polynomial pieces to fit the data. We investigate linear and cubic splines determined by MARS to "human" determined linear splines and their impact on the CRF. Within this work we try to answer the following questions: How can we find optimal criteria for the definition of the defining and unstable sources? What are the best polynomials for the individual categories? How much can we improve the CRF by extending the parametrization of the sources?

Trophic relationships of albatrosses associated with squid and large-mesh drift-net fisheries in the North Pacific Ocean

USGS Publications Warehouse

Gould, Patrick J.; Ostrom, Peggy H.; Walker, William

1997-01-01

The diets of Laysan (Diomedea immutabilis) and black-footed albatrosses (D. nigripes) killed in squid and large-mesh drift nets in the transitional zone of the North Pacific Ocean were investigated by examining the contents of the digestive tracts and determining δ13C and δ15N values in breast-muscle tissue. The results show that (i) the combined prey of the two species of albatross consists of over 46 species of marine organisms including coelenterates, arthropods, mollusks, fish, and marine mammals; (ii) both species supplement their traditional diets with food made available by commercial fishing operations (e.g., net-caught squid and offal); (iii) while obtained from drift nets, diets of nonbreeding Laysan and black-footed albatrosses are dominated by neon flying squid (Ommastrephes bartrami); (iv) in the absence of drift-net-related food, Laysan albatrosses feed most heavily on fish and black-footed albatrosses feed most heavily on squid; and (v) based on δ15N values, nonbreeding adult Laysan albatrosses from the transitional zone of the North Pacific Ocean and Laysan albatross nestlings fed by adults from Midway Island in the subtropical Pacific feed at one trophic level and one-third of a trophic level lower than black-footed albatrosses, respectively.

Net-Shape HIP Powder Metallurgy Components for Rocket Engines

NASA Technical Reports Server (NTRS)

Bampton, Cliff; Goodin, Wes; VanDaam, Tom; Creeger, Gordon; James, Steve

2005-01-01

True net shape consolidation of powder metal (PM) by hot isostatic pressing (HIP) provides opportunities for many cost, performance and life benefits over conventional fabrication processes for large rocket engine structures. Various forms of selectively net-shape PM have been around for thirty years or so. However, it is only recently that major applications have been pursued for rocket engine hardware fabricated in the United States. The method employs sacrificial metallic tooling (HIP capsule and shaped inserts), which is removed from the part after HIP consolidation of the powder, by selective acid dissolution. Full exploitation of net-shape PM requires innovative approaches in both component design and materials and processing details. The benefits include: uniform and homogeneous microstructure with no porosity, irrespective of component shape and size; elimination of welds and the associated quality and life limitations; removal of traditional producibility constraints on design freedom, such as forgeability and machinability, and scale-up to very large, monolithic parts, limited only by the size of existing HIP furnaces. Net-shape PM HIP also enables fabrication of complex configurations providing additional, unique functionalities. The progress made in these areas will be described. Then critical aspects of the technology that still require significant further development and maturation will be discussed from the perspective of an engine systems builder and end-user of the technology.

Infrared video tracking of Anopheles gambiae at insecticide-treated bed nets reveals rapid decisive impact after brief localised net contact

PubMed Central

Parker, Josephine E.A.; Angarita-Jaimes, Natalia; Abe, Mayumi; Towers, Catherine E.; Towers, David; McCall, Philip J.

2015-01-01

Long-lasting insecticidal bed nets (LLINs) protect humans from malaria transmission and are fundamental to malaria control worldwide, but little is known of how mosquitoes interact with nets. Elucidating LLIN mode of action is essential to maintain or improve efficacy, an urgent need as emerging insecticide resistance threatens their future. Tracking multiple free-flying Anopheles gambiae responding to human-occupied bed nets in a novel large-scale system, we characterised key behaviours and events. Four behavioural modes with different levels of net contact were defined: swooping, visiting, bouncing and resting. Approximately 75% of all activity occurred at the bed net roof where multiple brief contacts were focussed above the occupant’s torso. Total flight and net contact times were lower at LLINs than untreated nets but the essential character of the response was unaltered. LLINs did not repel mosquitoes but impacted rapidly: LLIN contact of less than 1 minute per mosquito during the first ten minutes reduced subsequent activity; after thirty minutes, activity at LLINs was negligible. Velocity measurements showed that mosquitoes detected nets, including unbaited untreated nets, prior to contact. This is the most complete characterisation of mosquito-LLIN interactions to date, and reveals many aspects of LLIN mode of action, important for developing the next generation of LLINs. PMID:26323965

Large herbivores facilitate savanna tree establishment via diverse and indirect pathways.

PubMed

Goheen, Jacob R; Palmer, Todd M; Keesing, Felicia; Riginos, Corinna; Young, Truman P

2010-03-01

1. Savanna ecosystems are defined largely by tree-grass mixtures, and tree establishment is a key driver of community structure and ecosystem function in these systems. The factors controlling savanna tree establishment are understudied, but likely involve some combination of seed, microsite and predator/fire limitation. In African savannas, suppression and killing of adult trees by large mammals like elephants (Loxodonta africana Blumenbach, 1797) and giraffes (Giraffa camelopardalis Linnaeus, 1758) can maintain tree-grass co-dominance, although the impacts of even these conspicuous herbivores on tree establishment also are poorly understood. 2. We combined seed addition and predator exclusion experiments with a large-scale, long-term field manipulation of large herbivores to investigate the relative importance of seeds, microsites and predators in limiting establishment of a monodominant tree (Acacia drepanolobium Sjostedt) in a Kenyan savanna. 3. Both wild and domestic (i.e. cattle; Bos taurus Linnaeus, 1758) large herbivores facilitated tree establishment by suppressing abundances of rodents, the most important seed and seedling predators. However, this indirect, positive effect of wild herbivores was negated by wild herbivores' suppression of seed production. Cattle did not have this direct, negative impact; rather, they further assisted tree establishment by reducing cover of understorey grasses. Thus, the impacts of both groups of large herbivores on tree establishment were largely routed through other taxa, with a negligible net effect of wild herbivores and a positive net effect of cattle on tree establishment. 4. The distinction between the (positive) net effect of cattle and (neutral) net effect of wild herbivores is due to the inclusion of browsers and mixed feeders within the assemblage of wild herbivores. Browsing by wild herbivores limited seed production, which reduced tree recruitment; grazing by cattle was more pronounced than that by wild herbivores, and thus promoted germination and subsequent establishment of small trees. 5. Our study is the first to link seed fates to tree establishment in savanna ecosystems in experimentally-manipulated herbivore communities. Further, our results highlight how large herbivores can modify a suite of independent factors - seed production, competition with understorey species, and seed and seedling predation - to collectively drive tree establishment.

The impact of boundary layer turbulence on snow growth and precipitation: Idealized Large Eddy Simulations

NASA Astrophysics Data System (ADS)

Chu, Xia; Xue, Lulin; Geerts, Bart; Kosović, Branko

2018-05-01

Ice particles and supercooled droplets often co-exist in planetary boundary-layer (PBL) clouds. The question examined in this numerical study is how large turbulent PBL eddies affect snow growth and surface precipitation from mixed-phase PBL clouds. In order to simplify this question, this study assumes an idealized BL with well-developed turbulence but no surface heat fluxes or radiative heat exchanges. Large Eddy Simulations with and without resolved PBL turbulence are compared. This comparison demonstrates that the impact on snow growth in mixed-phase clouds is controlled by two opposing mechanisms, a microphysical and a dynamical one. The cloud microphysical impact of large turbulent eddies is based on the difference in saturation vapor pressure over water and over ice. The net outcome of alternating turbulent up- and downdrafts is snow growth by diffusion and/or accretion (riming). On the other hand, turbulence-induced entrainment and detrainment may suppress snow growth. In the case presented herein, the net effect of these microphysical and dynamical processes is positive, but in general the net effect depends on ambient conditions, in particular the profiles of temperature, humidity, and wind.

Net Zero Energy Military Installations: A Guide to Assessment and Planning

DOE Office of Scientific and Technical Information (OSTI.GOV)

Booth, S.; Barnett, J.; Burman, K.

2010-08-01

The U.S. Department of Defense (DoD) recognizes the strategic importance of energy to its mission, and is working to reduce energy consumption and enhance energy self-sufficiency by drawing on local clean energy sources. A joint initiative formed between DoD and the U.S. Department of Energy (DOE) in 2008 to address military energy use led to a task force to examine the potential for net zero energy military installations, which would produce as much energy on site as they consume in buildings, facilities, and fleet vehicles. This report presents an assessment and planning process to examine military installations for net zeromore » energy potential. Net Zero Energy Installation Assessment (NZEIA) presents a systematic framework to analyze energy projects at installations while balancing other site priorities such as mission, cost, and security.« less

Carbon dioxide efficiency of terrestrial enhanced weathering.

PubMed

Moosdorf, Nils; Renforth, Phil; Hartmann, Jens

2014-05-06

Terrestrial enhanced weathering, the spreading of ultramafic silicate rock flour to enhance natural weathering rates, has been suggested as part of a strategy to reduce global atmospheric CO2 levels. We budget potential CO2 sequestration against associated CO2 emissions to assess the net CO2 removal of terrestrial enhanced weathering. We combine global spatial data sets of potential source rocks, transport networks, and application areas with associated CO2 emissions in optimistic and pessimistic scenarios. The results show that the choice of source rocks and material comminution technique dominate the CO2 efficiency of enhanced weathering. CO2 emissions from transport amount to on average 0.5-3% of potentially sequestered CO2. The emissions of material mining and application are negligible. After accounting for all emissions, 0.5-1.0 t CO2 can be sequestered on average per tonne of rock, translating into a unit cost from 1.6 to 9.9 GJ per tonne CO2 sequestered by enhanced weathering. However, to control or reduce atmospheric CO2 concentrations substantially with enhanced weathering would require very large amounts of rock. Before enhanced weathering could be applied on large scales, more research is needed to assess weathering rates, potential side effects, social acceptability, and mechanisms of governance.