Science.gov

Sample records for large scale structure

  1. Unification and large-scale structure.

    PubMed Central

    Laing, R A

    1995-01-01

    The hypothesis of relativistic flow on parsec scales, coupled with the symmetrical (and therefore subrelativistic) outer structure of extended radio sources, requires that jets decelerate on scales observable with the Very Large Array. The consequences of this idea for the appearances of FRI and FRII radio sources are explored. PMID:11607609

  2. Fractals and cosmological large-scale structure

    NASA Technical Reports Server (NTRS)

    Luo, Xiaochun; Schramm, David N.

    1992-01-01

    Observations of galaxy-galaxy and cluster-cluster correlations as well as other large-scale structure can be fit with a 'limited' fractal with dimension D of about 1.2. This is not a 'pure' fractal out to the horizon: the distribution shifts from power law to random behavior at some large scale. If the observed patterns and structures are formed through an aggregation growth process, the fractal dimension D can serve as an interesting constraint on the properties of the stochastic motion responsible for limiting the fractal structure. In particular, it is found that the observed fractal should have grown from two-dimensional sheetlike objects such as pancakes, domain walls, or string wakes. This result is generic and does not depend on the details of the growth process.

  3. Large-scale wind turbine structures

    NASA Technical Reports Server (NTRS)

    Spera, David A.

    1988-01-01

    The purpose of this presentation is to show how structural technology was applied in the design of modern wind turbines, which were recently brought to an advanced stage of development as sources of renewable power. Wind turbine structures present many difficult problems because they are relatively slender and flexible; subject to vibration and aeroelastic instabilities; acted upon by loads which are often nondeterministic; operated continuously with little maintenance in all weather; and dominated by life-cycle cost considerations. Progress in horizontal-axis wind turbines (HAWT) development was paced by progress in the understanding of structural loads, modeling of structural dynamic response, and designing of innovative structural response. During the past 15 years a series of large HAWTs was developed. This has culminated in the recent completion of the world's largest operating wind turbine, the 3.2 MW Mod-5B power plane installed on the island of Oahu, Hawaii. Some of the applications of structures technology to wind turbine will be illustrated by referring to the Mod-5B design. First, a video overview will be presented to provide familiarization with the Mod-5B project and the important components of the wind turbine system. Next, the structural requirements for large-scale wind turbines will be discussed, emphasizing the difficult fatigue-life requirements. Finally, the procedures used to design the structure will be presented, including the use of the fracture mechanics approach for determining allowable fatigue stresses.

  4. Large-scale wind turbine structures

    NASA Astrophysics Data System (ADS)

    Spera, David A.

    1988-05-01

    The purpose of this presentation is to show how structural technology was applied in the design of modern wind turbines, which were recently brought to an advanced stage of development as sources of renewable power. Wind turbine structures present many difficult problems because they are relatively slender and flexible; subject to vibration and aeroelastic instabilities; acted upon by loads which are often nondeterministic; operated continuously with little maintenance in all weather; and dominated by life-cycle cost considerations. Progress in horizontal-axis wind turbines (HAWT) development was paced by progress in the understanding of structural loads, modeling of structural dynamic response, and designing of innovative structural response. During the past 15 years a series of large HAWTs was developed. This has culminated in the recent completion of the world's largest operating wind turbine, the 3.2 MW Mod-5B power plane installed on the island of Oahu, Hawaii. Some of the applications of structures technology to wind turbine will be illustrated by referring to the Mod-5B design. First, a video overview will be presented to provide familiarization with the Mod-5B project and the important components of the wind turbine system. Next, the structural requirements for large-scale wind turbines will be discussed, emphasizing the difficult fatigue-life requirements. Finally, the procedures used to design the structure will be presented, including the use of the fracture mechanics approach for determining allowable fatigue stresses.

  5. Neutrinos and large-scale structure

    SciTech Connect

    Eisenstein, Daniel J.

    2015-07-15

    I review the use of cosmological large-scale structure to measure properties of neutrinos and other relic populations of light relativistic particles. With experiments to measure the anisotropies of the cosmic microwave anisotropies and the clustering of matter at low redshift, we now have securely measured a relativistic background with density appropriate to the cosmic neutrino background. Our limits on the mass of the neutrino continue to shrink. Experiments coming in the next decade will greatly improve the available precision on searches for the energy density of novel relativistic backgrounds and the mass of neutrinos.

  6. The XMM Large Scale Structure Survey

    NASA Astrophysics Data System (ADS)

    Pierre, Marguerite

    2005-10-01

    We propose to complete, by an additional 5 deg2, the XMM-LSS Survey region overlying the Spitzer/SWIRE field. This field already has CFHTLS and Integral coverage, and will encompass about 10 deg2. The resulting multi-wavelength medium-depth survey, which complements XMM and Chandra deep surveys, will provide a unique view of large-scale structure over a wide range of redshift, and will show active galaxies in the full range of environments. The complete coverage by optical and IR surveys provides high-quality photometric redshifts, so that cosmological results can quickly be extracted. In the spirit of a Legacy survey, we will make the raw X-ray data immediately public. Multi-band catalogues and images will also be made available on short time scales.

  7. The challenge of large-scale structure

    NASA Astrophysics Data System (ADS)

    Gregory, S. A.

    1996-03-01

    The tasks that I have assumed for myself in this presentation include three separate parts. The first, appropriate to the particular setting of this meeting, is to review the basic work of the founding of this field; the appropriateness comes from the fact that W. G. Tifft made immense contributions that are not often realized by the astronomical community. The second task is to outline the general tone of the observational evidence for large scale structures. (Here, in particular, I cannot claim to be complete. I beg forgiveness from any workers who are left out by my oversight for lack of space and time.) The third task is to point out some of the major aspects of the field that may represent the clues by which some brilliant sleuth will ultimately figure out how galaxies formed.

  8. Grid sensitivity capability for large scale structures

    NASA Technical Reports Server (NTRS)

    Nagendra, Gopal K.; Wallerstein, David V.

    1989-01-01

    The considerations and the resultant approach used to implement design sensitivity capability for grids into a large scale, general purpose finite element system (MSC/NASTRAN) are presented. The design variables are grid perturbations with a rather general linking capability. Moreover, shape and sizing variables may be linked together. The design is general enough to facilitate geometric modeling techniques for generating design variable linking schemes in an easy and straightforward manner. Test cases have been run and validated by comparison with the overall finite difference method. The linking of a design sensitivity capability for shape variables in MSC/NASTRAN with an optimizer would give designers a powerful, automated tool to carry out practical optimization design of real life, complicated structures.

  9. Simulations of Large Scale Structures in Cosmology

    NASA Astrophysics Data System (ADS)

    Liao, Shihong

    Large-scale structures are powerful probes for cosmology. Due to the long range and non-linear nature of gravity, the formation of cosmological structures is a very complicated problem. The only known viable solution is cosmological N-body simulations. In this thesis, we use cosmological N-body simulations to study structure formation, particularly dark matter haloes' angular momenta and dark matter velocity field. The origin and evolution of angular momenta is an important ingredient for the formation and evolution of haloes and galaxies. We study the time evolution of the empirical angular momentum - mass relation for haloes to offer a more complete picture about its origin, dependences on cosmological models and nonlinear evolutions. We also show that haloes follow a simple universal specific angular momentum profile, which is useful in modelling haloes' angular momenta. The dark matter velocity field will become a powerful cosmological probe in the coming decades. However, theoretical predictions of the velocity field rely on N-body simulations and thus may be affected by numerical artefacts (e.g. finite box size, softening length and initial conditions). We study how such numerical effects affect the predicted pairwise velocities, and we propose a theoretical framework to understand and correct them. Our results will be useful for accurately comparing N-body simulations to observational data of pairwise velocities.

  10. Real or virtual large-scale structure?

    PubMed Central

    Evrard, August E.

    1999-01-01

    Modeling the development of structure in the universe on galactic and larger scales is the challenge that drives the field of computational cosmology. Here, photorealism is used as a simple, yet expert, means of assessing the degree to which virtual worlds succeed in replicating our own. PMID:10200243

  11. Precision Measurement of Large Scale Structure

    NASA Technical Reports Server (NTRS)

    Hamilton, A. J. S.

    2001-01-01

    The purpose of this grant was to develop and to start to apply new precision methods for measuring the power spectrum and redshift distortions from the anticipated new generation of large redshift surveys. A highlight of work completed during the award period was the application of the new methods developed by the PI to measure the real space power spectrum and redshift distortions of the IRAS PSCz survey, published in January 2000. New features of the measurement include: (1) measurement of power over an unprecedentedly broad range of scales, 4.5 decades in wavenumber, from 0.01 to 300 h/Mpc; (2) at linear scales, not one but three power spectra are measured, the galaxy-galaxy, galaxy-velocity, and velocity-velocity power spectra; (3) at linear scales each of the three power spectra is decorrelated within itself, and disentangled from the other two power spectra (the situation is analogous to disentangling scalar and tensor modes in the Cosmic Microwave Background); and (4) at nonlinear scales the measurement extracts not only the real space power spectrum, but also the full line-of-sight pairwise velocity distribution in redshift space.

  12. Local gravity and large-scale structure

    NASA Technical Reports Server (NTRS)

    Juszkiewicz, Roman; Vittorio, Nicola; Wyse, Rosemary F. G.

    1990-01-01

    The magnitude and direction of the observed dipole anisotropy of the galaxy distribution can in principle constrain the amount of large-scale power present in the spectrum of primordial density fluctuations. This paper confronts the data, provided by a recent redshift survey of galaxies detected by the IRAS satellite, with the predictions of two cosmological models with very different levels of large-scale power: the biased Cold Dark Matter dominated model (CDM) and a baryon-dominated model (BDM) with isocurvature initial conditions. Model predictions are investigated for the Local Group peculiar velocity, v(R), induced by mass inhomogeneities distributed out to a given radius, R, for R less than about 10,000 km/s. Several convergence measures for v(R) are developed, which can become powerful cosmological tests when deep enough samples become available. For the present data sets, the CDM and BDM predictions are indistinguishable at the 2 sigma level and both are consistent with observations. A promising discriminant between cosmological models is the misalignment angle between v(R) and the apex of the dipole anisotropy of the microwave background.

  13. Large scale structures in transitional pipe flow

    NASA Astrophysics Data System (ADS)

    Hellström, Leo; Ganapathisubramani, Bharathram; Smits, Alexander

    2015-11-01

    We present a dual-plane snapshot POD analysis of transitional pipe flow at a Reynolds number of 3440, based on the pipe diameter. The time-resolved high-speed PIV data were simultaneously acquired in two planes, a cross-stream plane (2D-3C) and a streamwise plane (2D-2C) on the pipe centerline. The two light sheets were orthogonally polarized, allowing particles situated in each plane to be viewed independently. In the snapshot POD analysis, the modal energy is based on the cross-stream plane, while the POD modes are calculated using the dual-plane data. We present results on the emergence and decay of the energetic large scale motions during transition to turbulence, and compare these motions to those observed in fully developed turbulent flow. Supported under ONR Grant N00014-13-1-0174 and ERC Grant No. 277472.

  14. Curvature constraints from large scale structure

    NASA Astrophysics Data System (ADS)

    Di Dio, Enea; Montanari, Francesco; Raccanelli, Alvise; Durrer, Ruth; Kamionkowski, Marc; Lesgourgues, Julien

    2016-06-01

    We modified the CLASS code in order to include relativistic galaxy number counts in spatially curved geometries; we present the formalism and study the effect of relativistic corrections on spatial curvature. The new version of the code is now publicly available. Using a Fisher matrix analysis, we investigate how measurements of the spatial curvature parameter ΩK with future galaxy surveys are affected by relativistic effects, which influence observations of the large scale galaxy distribution. These effects include contributions from cosmic magnification, Doppler terms and terms involving the gravitational potential. As an application, we consider angle and redshift dependent power spectra, which are especially well suited for model independent cosmological constraints. We compute our results for a representative deep, wide and spectroscopic survey, and our results show the impact of relativistic corrections on spatial curvature parameter estimation. We show that constraints on the curvature parameter may be strongly biased if, in particular, cosmic magnification is not included in the analysis. Other relativistic effects turn out to be subdominant in the studied configuration. We analyze how the shift in the estimated best-fit value for the curvature and other cosmological parameters depends on the magnification bias parameter, and find that significant biases are to be expected if this term is not properly considered in the analysis.

  15. Large Scale Turbulent Structures in Supersonic Jets

    NASA Technical Reports Server (NTRS)

    Rao, Ram Mohan; Lundgren, Thomas S.

    1997-01-01

    Jet noise is a major concern in the design of commercial aircraft. Studies by various researchers suggest that aerodynamic noise is a major contributor to jet noise. Some of these studies indicate that most of the aerodynamic jet noise due to turbulent mixing occurs when there is a rapid variation in turbulent structure, i.e. rapidly growing or decaying vortices. The objective of this research was to simulate a compressible round jet to study the non-linear evolution of vortices and the resulting acoustic radiations. In particular, to understand the effect of turbulence structure on the noise. An ideal technique to study this problem is Direct Numerical Simulations (DNS), because it provides precise control on the initial and boundary conditions that lead to the turbulent structures studied. It also provides complete 3-dimensional time dependent data. Since the dynamics of a temporally evolving jet are not greatly different from those of a spatially evolving jet, a temporal jet problem was solved, using periodicity in the direction of the jet axis. This enables the application of Fourier spectral methods in the streamwise direction. Physically this means that turbulent structures in the jet are repeated in successive downstream cells instead of being gradually modified downstream into a jet plume. The DNS jet simulation helps us understand the various turbulent scales and mechanisms of turbulence generation in the evolution of a compressible round jet. These accurate flow solutions will be used in future research to estimate near-field acoustic radiation by computing the total outward flux across a surface and determine how it is related to the evolution of the turbulent solutions. Furthermore, these simulations allow us to investigate the sensitivity of acoustic radiations to inlet/boundary conditions, with possible appli(,a- tion to active noise suppression. In addition, the data generated can be used to compute, various turbulence quantities such as mean

  16. Large Scale Turbulent Structures in Supersonic Jets

    NASA Technical Reports Server (NTRS)

    Rao, Ram Mohan; Lundgren, Thomas S.

    1997-01-01

    Jet noise is a major concern in the design of commercial aircraft. Studies by various researchers suggest that aerodynamic noise is a major contributor to jet noise. Some of these studies indicate that most of the aerodynamic jet noise due to turbulent mixing occurs when there is a rapid variation in turbulent structure, i.e. rapidly growing or decaying vortices. The objective of this research was to simulate a compressible round jet to study the non-linear evolution of vortices and the resulting acoustic radiations. In particular, to understand the effect of turbulence structure on the noise. An ideal technique to study this problem is Direct Numerical Simulations(DNS), because it provides precise control on the initial and boundary conditions that lead to the turbulent structures studied. It also provides complete 3-dimensional time dependent data. Since the dynamics of a temporally evolving jet are not greatly different from those, of a spatially evolving jet, a temporal jet problem was solved, using periodicity ill the direction of the jet axis. This enables the application of Fourier spectral methods in the streamwise direction. Physically this means that turbulent structures in the jet are repeated in successive downstream cells instead of being gradually modified downstream into a jet plume. The DNS jet simulation helps us understand the various turbulent scales and mechanisms of turbulence generation in the evolution of a compressible round jet. These accurate flow solutions will be used in future research to estimate near-field acoustic radiation by computing the total outward flux across a surface and determine how it is related to the evolution of the turbulent solutions. Furthermore, these simulations allow us to investigate the sensitivity of acoustic radiations to inlet/boundary conditions, with possible application to active noise suppression. In addition, the data generated can be used to compute various turbulence quantities such as mean velocities

  17. Probes of large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Suto, Yasushi; Gorski, Krzysztof; Juszkiewicz, Roman; Silk, Joseph

    1988-01-01

    A general formalism is developed which shows that the gravitational instability theory for the origin of the large-scale structure of the universe is now capable of critically confronting observational results on cosmic background radiation angular anisotropies, large-scale bulk motions, and large-scale clumpiness in the galaxy counts. The results indicate that presently advocated cosmological models will have considerable difficulty in simultaneously explaining the observational results.

  18. Cosmic strings and the large-scale structure

    NASA Technical Reports Server (NTRS)

    Stebbins, Albert

    1988-01-01

    A possible problem for cosmic string models of galaxy formation is presented. If very large voids are common and if loop fragmentation is not much more efficient than presently believed, then it may be impossible for string scenarios to produce the observed large-scale structure with Omega sub 0 = 1 and without strong environmental biasing.

  19. EINSTEIN'S SIGNATURE IN COSMOLOGICAL LARGE-SCALE STRUCTURE

    SciTech Connect

    Bruni, Marco; Hidalgo, Juan Carlos; Wands, David

    2014-10-10

    We show how the nonlinearity of general relativity generates a characteristic nonGaussian signal in cosmological large-scale structure that we calculate at all perturbative orders in a large-scale limit. Newtonian gravity and general relativity provide complementary theoretical frameworks for modeling large-scale structure in ΛCDM cosmology; a relativistic approach is essential to determine initial conditions, which can then be used in Newtonian simulations studying the nonlinear evolution of the matter density. Most inflationary models in the very early universe predict an almost Gaussian distribution for the primordial metric perturbation, ζ. However, we argue that it is the Ricci curvature of comoving-orthogonal spatial hypersurfaces, R, that drives structure formation at large scales. We show how the nonlinear relation between the spatial curvature, R, and the metric perturbation, ζ, translates into a specific nonGaussian contribution to the initial comoving matter density that we calculate for the simple case of an initially Gaussian ζ. Our analysis shows the nonlinear signature of Einstein's gravity in large-scale structure.

  20. Identification of Extremely Large Scale Structures in SDSS-III

    NASA Astrophysics Data System (ADS)

    Sankhyayan, Shishir; Bagchi, J.; Sarkar, P.; Sahni, V.; Jacob, J.

    2016-10-01

    We have initiated the search and detailed study of large scale structures present in the universe using galaxy redshift surveys. In this process, we take the volume-limited sample of galaxies from Sloan Digital Sky Survey III and find very large structures even beyond the redshift of 0.2. One of the structures is even greater than 600 Mpc which raises a question on the homogeneity scale of the universe. The shapes of voids-structures (adjacent to each other) seem to be correlated, which supports the physical existence of the observed structures. The other observational supports include galaxy clusters' and QSO distribution's correlation with the density peaks of the volume limited sample of galaxies.

  1. The Large-Scale Structure of Scientific Method

    ERIC Educational Resources Information Center

    Kosso, Peter

    2009-01-01

    The standard textbook description of the nature of science describes the proposal, testing, and acceptance of a theoretical idea almost entirely in isolation from other theories. The resulting model of science is a kind of piecemeal empiricism that misses the important network structure of scientific knowledge. Only the large-scale description of…

  2. Turbulent large-scale structure effects on wake meandering

    NASA Astrophysics Data System (ADS)

    Muller, Y.-A.; Masson, C.; Aubrun, S.

    2015-06-01

    This work studies effects of large-scale turbulent structures on wake meandering using Large Eddy Simulations (LES) over an actuator disk. Other potential source of wake meandering such as the instablility mechanisms associated with tip vortices are not treated in this study. A crucial element of the efficient, pragmatic and successful simulations of large-scale turbulent structures in Atmospheric Boundary Layer (ABL) is the generation of the stochastic turbulent atmospheric flow. This is an essential capability since one source of wake meandering is these large - larger than the turbine diameter - turbulent structures. The unsteady wind turbine wake in ABL is simulated using a combination of LES and actuator disk approaches. In order to dedicate the large majority of the available computing power in the wake, the ABL ground region of the flow is not part of the computational domain. Instead, mixed Dirichlet/Neumann boundary conditions are applied at all the computational surfaces except at the outlet. Prescribed values for Dirichlet contribution of these boundary conditions are provided by a stochastic turbulent wind generator. This allows to simulate large-scale turbulent structures - larger than the computational domain - leading to an efficient simulation technique of wake meandering. Since the stochastic wind generator includes shear, the turbulence production is included in the analysis without the necessity of resolving the flow near the ground. The classical Smagorinsky sub-grid model is used. The resulting numerical methodology has been implemented in OpenFOAM. Comparisons with experimental measurements in porous-disk wakes have been undertaken, and the agreements are good. While temporal resolution in experimental measurements is high, the spatial resolution is often too low. LES numerical results provide a more complete spatial description of the flow. They tend to demonstrate that inflow low frequency content - or large- scale turbulent structures - is

  3. Simulating Weak Lensing by Large-Scale Structure

    NASA Astrophysics Data System (ADS)

    Vale, Chris; White, Martin

    2003-08-01

    We model weak gravitational lensing of light by large-scale structure using ray tracing through N-body simulations. The method is described with particular attention paid to numerical convergence. We investigate some of the key approximations in the multiplane ray-tracing algorithm. Our simulated shear and convergence maps are used to explore how well standard assumptions about weak lensing hold, especially near large peaks in the lensing signal.

  4. Alignment of quasar polarizations with large-scale structures

    NASA Astrophysics Data System (ADS)

    Hutsemékers, D.; Braibant, L.; Pelgrims, V.; Sluse, D.

    2014-12-01

    We have measured the optical linear polarization of quasars belonging to Gpc scale quasar groups at redshift z ~ 1.3. Out of 93 quasars observed, 19 are significantly polarized. We found that quasar polarization vectors are either parallel or perpendicular to the directions of the large-scale structures to which they belong. Statistical tests indicate that the probability that this effect can be attributed to randomly oriented polarization vectors is on the order of 1%. We also found that quasars with polarization perpendicular to the host structure preferentially have large emission line widths while objects with polarization parallel to the host structure preferentially have small emission line widths. Considering that quasar polarization is usually either parallel or perpendicular to the accretion disk axis depending on the inclination with respect to the line of sight, and that broader emission lines originate from quasars seen at higher inclinations, we conclude that quasar spin axes are likely parallel to their host large-scale structures. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under program ID 092.A-0221.Table 1 is available in electronic form at http://www.aanda.org

  5. Lagrangian space consistency relation for large scale structure

    SciTech Connect

    Horn, Bart; Hui, Lam; Xiao, Xiao E-mail: lh399@columbia.edu

    2015-09-01

    Consistency relations, which relate the squeezed limit of an (N+1)-point correlation function to an N-point function, are non-perturbative symmetry statements that hold even if the associated high momentum modes are deep in the nonlinear regime and astrophysically complex. Recently, Kehagias and Riotto and Peloso and Pietroni discovered a consistency relation applicable to large scale structure. We show that this can be recast into a simple physical statement in Lagrangian space: that the squeezed correlation function (suitably normalized) vanishes. This holds regardless of whether the correlation observables are at the same time or not, and regardless of whether multiple-streaming is present. The simplicity of this statement suggests that an analytic understanding of large scale structure in the nonlinear regime may be particularly promising in Lagrangian space.

  6. The Large-scale Structure of Scientific Method

    NASA Astrophysics Data System (ADS)

    Kosso, Peter

    2009-01-01

    The standard textbook description of the nature of science describes the proposal, testing, and acceptance of a theoretical idea almost entirely in isolation from other theories. The resulting model of science is a kind of piecemeal empiricism that misses the important network structure of scientific knowledge. Only the large-scale description of scientific method can reveal the global interconnectedness of scientific knowledge that is an essential part of what makes science scientific.

  7. The effective field theory of cosmological large scale structures

    SciTech Connect

    Carrasco, John Joseph M.; Hertzberg, Mark P.; Senatore, Leonardo

    2012-09-20

    Large scale structure surveys will likely become the next leading cosmological probe. In our universe, matter perturbations are large on short distances and small at long scales, i.e. strongly coupled in the UV and weakly coupled in the IR. To make precise analytical predictions on large scales, we develop an effective field theory formulated in terms of an IR effective fluid characterized by several parameters, such as speed of sound and viscosity. These parameters, determined by the UV physics described by the Boltzmann equation, are measured from N-body simulations. We find that the speed of sound of the effective fluid is c2s ≈ 10–6c2 and that the viscosity contributions are of the same order. The fluid describes all the relevant physics at long scales k and permits a manifestly convergent perturbative expansion in the size of the matter perturbations δ(k) for all the observables. As an example, we calculate the correction to the power spectrum at order δ(k)4. As a result, the predictions of the effective field theory are found to be in much better agreement with observation than standard cosmological perturbation theory, already reaching percent precision at this order up to a relatively short scale k ≃ 0.24h Mpc–1.

  8. Large Scale Parallel Structured AMR Calculations using the SAMRAI Framework

    SciTech Connect

    Wissink, A M; Hornung, R D; Kohn, S R; Smith, S S; Elliott, N

    2001-08-01

    This paper discusses the design and performance of the parallel data communication infrastructure in SAMRAI, a software framework for structured adaptive mesh refinement (SAMR) multi-physics applications. We describe requirements of such applications and how SAMRAI abstractions manage complex data communication operations found in them. Parallel performance is characterized for two adaptive problems solving hyperbolic conservation laws on up to 512 processors of the IBM ASCI Blue Pacific system. Results reveal good scaling for numerical and data communication operations but poorer scaling in adaptive meshing and communication schedule construction phases of the calculations. We analyze the costs of these different operations, addressing key concerns for scaling SAMR computations to large numbers of processors, and discuss potential changes to improve our current implementation.

  9. Nonzero Density-Velocity Consistency Relations for Large Scale Structures.

    PubMed

    Rizzo, Luca Alberto; Mota, David F; Valageas, Patrick

    2016-08-19

    We present exact kinematic consistency relations for cosmological structures that do not vanish at equal times and can thus be measured in surveys. These rely on cross correlations between the density and velocity, or momentum, fields. Indeed, the uniform transport of small-scale structures by long-wavelength modes, which cannot be detected at equal times by looking at density correlations only, gives rise to a shift in the amplitude of the velocity field that could be measured. These consistency relations only rely on the weak equivalence principle and Gaussian initial conditions. They remain valid in the nonlinear regime and for biased galaxy fields. They can be used to constrain nonstandard cosmological scenarios or the large-scale galaxy bias. PMID:27588842

  10. Nonzero Density-Velocity Consistency Relations for Large Scale Structures

    NASA Astrophysics Data System (ADS)

    Rizzo, Luca Alberto; Mota, David F.; Valageas, Patrick

    2016-08-01

    We present exact kinematic consistency relations for cosmological structures that do not vanish at equal times and can thus be measured in surveys. These rely on cross correlations between the density and velocity, or momentum, fields. Indeed, the uniform transport of small-scale structures by long-wavelength modes, which cannot be detected at equal times by looking at density correlations only, gives rise to a shift in the amplitude of the velocity field that could be measured. These consistency relations only rely on the weak equivalence principle and Gaussian initial conditions. They remain valid in the nonlinear regime and for biased galaxy fields. They can be used to constrain nonstandard cosmological scenarios or the large-scale galaxy bias.

  11. U-shaped Vortex Structures in Large Scale Cloud Cavitation

    NASA Astrophysics Data System (ADS)

    Cao, Yantao; Peng, Xiaoxing; Xu, Lianghao; Hong, Fangwen

    2015-12-01

    The control of cloud cavitation, especially large scale cloud cavitation(LSCC), is always a hot issue in the field of cavitation research. However, there has been little knowledge on the evolution of cloud cavitation since it is associated with turbulence and vortex flow. In this article, the structure of cloud cavitation shed by sheet cavitation around different hydrofoils and a wedge were observed in detail with high speed camera (HSC). It was found that the U-shaped vortex structures always existed in the development process of LSCC. The results indicated that LSCC evolution was related to this kind of vortex structures, and it may be a universal character for LSCC. Then vortex strength of U-shaped vortex structures in a cycle was analyzed with numerical results.

  12. Locally Biased Galaxy Formation and Large-Scale Structure

    NASA Astrophysics Data System (ADS)

    Narayanan, Vijay K.; Berlind, Andreas A.; Weinberg, David H.

    2000-01-01

    We examine the influence of the morphology-density relation and a wide range of simple models for biased galaxy formation on statistical measures of large-scale structure. We contrast the behavior of local biasing models, in which the efficiency of galaxy formation is determined by the density, geometry, or velocity dispersion of the local mass distribution, with that of nonlocal biasing models, in which galaxy formation is modulated coherently over scales larger than the galaxy correlation length. If morphological segregation of galaxies is governed by a local morphology-density relation, then the correlation function of E/S0 galaxies should be steeper and stronger than that of spiral galaxies on small scales, as observed, while on large scales the E/S0 and spiral galaxies should have correlation functions with the same shape but different amplitudes. Similarly, all of our local bias models produce scale-independent amplification of the correlation function and power spectrum in the linear and mildly nonlinear regimes; only a nonlocal biasing mechanism can alter the shape of the power spectrum on large scales. Moments of the biased galaxy distribution retain the hierarchical pattern of the mass moments, but biasing alters the values and scale dependence of the hierarchical amplitudes S3 and S4. Pair-weighted moments of the galaxy velocity distribution are sensitive to the details of the bias prescription even if galaxies have the same local velocity distribution as the underlying dark matter. The nonlinearity of the relation between galaxy density and mass density depends on the biasing prescription and the smoothing scale, and the scatter in this relation is a useful diagnostic of the physical parameters that determine the bias. While the assumption that galaxy formation is governed by local physics leads to some important simplifications on large scales, even local biasing is a multifaceted phenomenon whose impact cannot be described by a single parameter or

  13. Solving large scale structure in ten easy steps with COLA

    SciTech Connect

    Tassev, Svetlin; Zaldarriaga, Matias; Eisenstein, Daniel J. E-mail: matiasz@ias.edu

    2013-06-01

    We present the COmoving Lagrangian Acceleration (COLA) method: an N-body method for solving for Large Scale Structure (LSS) in a frame that is comoving with observers following trajectories calculated in Lagrangian Perturbation Theory (LPT). Unlike standard N-body methods, the COLA method can straightforwardly trade accuracy at small-scales in order to gain computational speed without sacrificing accuracy at large scales. This is especially useful for cheaply generating large ensembles of accurate mock halo catalogs required to study galaxy clustering and weak lensing, as those catalogs are essential for performing detailed error analysis for ongoing and future surveys of LSS. As an illustration, we ran a COLA-based N-body code on a box of size 100 Mpc/h with particles of mass ≈ 5 × 10{sup 9}M{sub s}un/h. Running the code with only 10 timesteps was sufficient to obtain an accurate description of halo statistics down to halo masses of at least 10{sup 11}M{sub s}un/h. This is only at a modest speed penalty when compared to mocks obtained with LPT. A standard detailed N-body run is orders of magnitude slower than our COLA-based code. The speed-up we obtain with COLA is due to the fact that we calculate the large-scale dynamics exactly using LPT, while letting the N-body code solve for the small scales, without requiring it to capture exactly the internal dynamics of halos. Achieving a similar level of accuracy in halo statistics without the COLA method requires at least 3 times more timesteps than when COLA is employed.

  14. Solving large scale structure in ten easy steps with COLA

    NASA Astrophysics Data System (ADS)

    Tassev, Svetlin; Zaldarriaga, Matias; Eisenstein, Daniel J.

    2013-06-01

    We present the COmoving Lagrangian Acceleration (COLA) method: an N-body method for solving for Large Scale Structure (LSS) in a frame that is comoving with observers following trajectories calculated in Lagrangian Perturbation Theory (LPT). Unlike standard N-body methods, the COLA method can straightforwardly trade accuracy at small-scales in order to gain computational speed without sacrificing accuracy at large scales. This is especially useful for cheaply generating large ensembles of accurate mock halo catalogs required to study galaxy clustering and weak lensing, as those catalogs are essential for performing detailed error analysis for ongoing and future surveys of LSS. As an illustration, we ran a COLA-based N-body code on a box of size 100 Mpc/h with particles of mass ≈ 5 × 109Msolar/h. Running the code with only 10 timesteps was sufficient to obtain an accurate description of halo statistics down to halo masses of at least 1011Msolar/h. This is only at a modest speed penalty when compared to mocks obtained with LPT. A standard detailed N-body run is orders of magnitude slower than our COLA-based code. The speed-up we obtain with COLA is due to the fact that we calculate the large-scale dynamics exactly using LPT, while letting the N-body code solve for the small scales, without requiring it to capture exactly the internal dynamics of halos. Achieving a similar level of accuracy in halo statistics without the COLA method requires at least 3 times more timesteps than when COLA is employed.

  15. Large-scale structure non-Gaussianities with modal methods

    NASA Astrophysics Data System (ADS)

    Schmittfull, Marcel

    2016-10-01

    Relying on a separable modal expansion of the bispectrum, the implementation of a fast estimator for the full bispectrum of a 3d particle distribution is presented. The computational cost of accurate bispectrum estimation is negligible relative to simulation evolution, so the bispectrum can be used as a standard diagnostic whenever the power spectrum is evaluated. As an application, the time evolution of gravitational and primordial dark matter bispectra was measured in a large suite of N-body simulations. The bispectrum shape changes characteristically when the cosmic web becomes dominated by filaments and halos, therefore providing a quantitative probe of 3d structure formation. Our measured bispectra are determined by ~ 50 coefficients, which can be used as fitting formulae in the nonlinear regime and for non-Gaussian initial conditions. We also compare the measured bispectra with predictions from the Effective Field Theory of Large Scale Structures (EFTofLSS).

  16. Shock waves in the large scale structure of the universe

    NASA Astrophysics Data System (ADS)

    Ryu, Dongsu

    Cosmological shock waves result from the supersonic flow motions induced by hierarchical formation of nonlinear structures in the universe. Like most astrophysical shocks, they are collisionless shocks which form in the tenuous intergalactic plasma via collective electromagnetic interactions between particles and electromagnetic fields. The gravitational energy released during the structure formation is transferred by these shocks to the intergalactic gas in several different forms. In addition to the gas entropy, cosmic rays are produced via diffusive shock acceleration, magnetic fields are generated via the Biermann battery mechanism and Weibel instability as well as the Bell-Lucek mechanism, and vorticity is generated at curved shocks. Here we review the properties, roles, and consequences of the shock waves in the context of the large scale structure of the universe.

  17. Shock Waves in the Large Scale Structure of the Universe

    NASA Astrophysics Data System (ADS)

    Ryu, Dongsu

    2008-04-01

    Cosmological shock waves result from the supersonic flow motions induced by hierarchical formation of nonlinear structures in the universe. Like most astrophysical shocks, they are collisionless shocks which form in the tenuous intergalactic plasma via collective electromagnetic interactions between particles and electromagnetic fields. The gravitational energy released during the structure formation is transferred by these shocks to the intergalactic gas in several different forms: in addition to the gas entropy, cosmic rays are produced via diffusive shock acceleration, magnetic fields are generated via the Biermann battery mechanism and Weibel instability, and vorticity is generated at curved shocks. Here I review the properties, roles, and consequences of the shock waves in the context of the large scale structure of the universe.

  18. Large-scale coherent structures as drivers of combustion instability

    SciTech Connect

    Schadow, K.C.; Gutmark, E.; Parr, T.P.; Parr, D.M.; Wilson, K.J.

    1987-06-01

    The role of flow coherent structures as drivers of combustion instabilities in a dump combustor was studied. Results of nonreacting tests in air and water flows as well as combustion experiments in a diffusion flame and dump combustor are discussed to provide insight into the generation process of large-scale structures in the combustor flow and their interaction with the combustion process. It is shown that the flow structures, or vortices, are formed by interaction between the flow instabilities and the chamber acoustic resonance. When these vortices dominate the reacting flow, the combustion is confined to their cores, leading to periodic heat release, which may result in the driving of high amplitude pressure oscillations. These oscillations are typical to the occurrence of combustion instabilities for certain operating conditions. The basic understanding of the interaction between flow dynamics and the combustion process opens up the possibility for rational control of combustion-induced pressure oscillations. 42 references.

  19. Complex modular structure of large-scale brain networks

    NASA Astrophysics Data System (ADS)

    Valencia, M.; Pastor, M. A.; Fernández-Seara, M. A.; Artieda, J.; Martinerie, J.; Chavez, M.

    2009-06-01

    Modular structure is ubiquitous among real-world networks from related proteins to social groups. Here we analyze the modular organization of brain networks at a large scale (voxel level) extracted from functional magnetic resonance imaging signals. By using a random-walk-based method, we unveil the modularity of brain webs and show modules with a spatial distribution that matches anatomical structures with functional significance. The functional role of each node in the network is studied by analyzing its patterns of inter- and intramodular connections. Results suggest that the modular architecture constitutes the structural basis for the coexistence of functional integration of distant and specialized brain areas during normal brain activities at rest.

  20. Laser Welding of Large Scale Stainless Steel Aircraft Structures

    NASA Astrophysics Data System (ADS)

    Reitemeyer, D.; Schultz, V.; Syassen, F.; Seefeld, T.; Vollertsen, F.

    In this paper a welding process for large scale stainless steel structures is presented. The process was developed according to the requirements of an aircraft application. Therefore, stringers are welded on a skin sheet in a t-joint configuration. The 0.6 mm thickness parts are welded with a thin disc laser, seam length up to 1920 mm are demonstrated. The welding process causes angular distortions of the skin sheet which are compensated by a subsequent laser straightening process. Based on a model straightening process parameters matching the induced welding distortion are predicted. The process combination is successfully applied to stringer stiffened specimens.

  1. Systematic renormalization of the effective theory of Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Akbar Abolhasani, Ali; Mirbabayi, Mehrdad; Pajer, Enrico

    2016-05-01

    A perturbative description of Large Scale Structure is a cornerstone of our understanding of the observed distribution of matter in the universe. Renormalization is an essential and defining step to make this description physical and predictive. Here we introduce a systematic renormalization procedure, which neatly associates counterterms to the UV-sensitive diagrams order by order, as it is commonly done in quantum field theory. As a concrete example, we renormalize the one-loop power spectrum and bispectrum of both density and velocity. In addition, we present a series of results that are valid to all orders in perturbation theory. First, we show that while systematic renormalization requires temporally non-local counterterms, in practice one can use an equivalent basis made of local operators. We give an explicit prescription to generate all counterterms allowed by the symmetries. Second, we present a formal proof of the well-known general argument that the contribution of short distance perturbations to large scale density contrast δ and momentum density π(k) scale as k2 and k, respectively. Third, we demonstrate that the common practice of introducing counterterms only in the Euler equation when one is interested in correlators of δ is indeed valid to all orders.

  2. The Large-scale Structure of the Universe: Probes of Cosmology and Structure Formation

    NASA Astrophysics Data System (ADS)

    Noh, Yookyung

    The usefulness of large-scale structure as a probe of cosmology and structure formation is increasing as large deep surveys in multi-wavelength bands are becoming possible. The observational analysis of large-scale structure guided by large volume numerical simulations are beginning to offer us complementary information and crosschecks of cosmological parameters estimated from the anisotropies in Cosmic Microwave Background (CMB) radiation. Understanding structure formation and evolution and even galaxy formation history is also being aided by observations of different redshift snapshots of the Universe, using various tracers of large-scale structure. This dissertation work covers aspects of large-scale structure from the baryon acoustic oscillation scale, to that of large scale filaments and galaxy clusters. First, I discuss a large- scale structure use for high precision cosmology. I investigate the reconstruction of Baryon Acoustic Oscillation (BAO) peak within the context of Lagrangian perturbation theory, testing its validity in a large suite of cosmological volume N-body simulations. Then I consider galaxy clusters and the large scale filaments surrounding them in a high resolution N-body simulation. I investigate the geometrical properties of galaxy cluster neighborhoods, focusing on the filaments connected to clusters. Using mock observations of galaxy clusters, I explore the correlations of scatter in galaxy cluster mass estimates from multi-wavelength observations and different measurement techniques. I also examine the sources of the correlated scatter by considering the intrinsic and environmental properties of clusters.

  3. Large-scale structure and matter in the Universe.

    PubMed

    Peacock, J A

    2003-11-15

    This paper summarizes the physical mechanisms that encode the type and quantity of cosmological matter in the properties of large-scale structure, and reviews the application of such tests to current datasets. The key lengths of the horizon size at matter-radiation equality and at last scattering determine the total matter density and its ratio to the relativistic density; acoustic oscillations can diagnose whether the matter is collisionless, and small-scale structure or its absence can limit the mass of any dark-matter relic particle. The most stringent constraints come from combining data on present-day galaxy clustering with data on CMB anisotropies. Such an analysis breaks the degeneracies inherent in either dataset alone, and proves that the Universe is very close to flat. The matter content is accurately consistent with pure cold dark matter, with ca. 25% of the critical density, and fluctuations that are scalar only, adiabatic and scale invariant. It is demonstrated that these conclusions cannot be evaded by adjusting either the equation of state of the vacuum, or the total relativistic density. PMID:14667313

  4. Large-scale structure of time evolving citation networks

    NASA Astrophysics Data System (ADS)

    Leicht, E. A.; Clarkson, G.; Shedden, K.; Newman, M. E. J.

    2007-09-01

    In this paper we examine a number of methods for probing and understanding the large-scale structure of networks that evolve over time. We focus in particular on citation networks, networks of references between documents such as papers, patents, or court cases. We describe three different methods of analysis, one based on an expectation-maximization algorithm, one based on modularity optimization, and one based on eigenvector centrality. Using the network of citations between opinions of the United States Supreme Court as an example, we demonstrate how each of these methods can reveal significant structural divisions in the network and how, ultimately, the combination of all three can help us develop a coherent overall picture of the network's shape.

  5. Large Scale Electronic Structure Calculations using Quantum Chemistry Methods

    NASA Astrophysics Data System (ADS)

    Scuseria, Gustavo E.

    1998-03-01

    This talk will address our recent efforts in developing fast, linear scaling electronic structure methods for large scale applications. Of special importance is our fast multipole method( M. C. Strain, G. E. Scuseria, and M. J. Frisch, Science 271), 51 (1996). (FMM) for achieving linear scaling for the quantum Coulomb problem (GvFMM), the traditional bottleneck in quantum chemistry calculations based on Gaussian orbitals. Fast quadratures(R. E. Stratmann, G. E. Scuseria, and M. J. Frisch, Chem. Phys. Lett. 257), 213 (1996). combined with methods that avoid the Hamiltonian diagonalization( J. M. Millam and G. E. Scuseria, J. Chem. Phys. 106), 5569 (1997) have resulted in density functional theory (DFT) programs that can be applied to systems containing many hundreds of atoms and ---depending on computational resources or level of theory-- to many thousands of atoms.( A. D. Daniels, J. M. Millam and G. E. Scuseria, J. Chem. Phys. 107), 425 (1997). Three solutions for the diagonalization bottleneck will be analyzed and compared: a conjugate gradient density matrix search (CGDMS), a Hamiltonian polynomial expansion of the density matrix, and a pseudo-diagonalization method. Besides DFT, our near-field exchange method( J. C. Burant, G. E. Scuseria, and M. J. Frisch, J. Chem. Phys. 105), 8969 (1996). for linear scaling Hartree-Fock calculations will be discussed. Based on these improved capabilities, we have also developed programs to obtain vibrational frequencies (via analytic energy second derivatives) and excitation energies (through time-dependent DFT) of large molecules like porphyn or C_70. Our GvFMM has been extended to periodic systems( K. N. Kudin and G. E. Scuseria, Chem. Phys. Lett., in press.) and progress towards a Gaussian-based DFT and HF program for polymers and solids will be reported. Last, we will discuss our progress on a Laplace-transformed \\cal O(N^2) second-order pertubation theory (MP2) method.

  6. Simulating the large-scale structure of HI intensity maps

    NASA Astrophysics Data System (ADS)

    Seehars, Sebastian; Paranjape, Aseem; Witzemann, Amadeus; Refregier, Alexandre; Amara, Adam; Akeret, Joel

    2016-03-01

    Intensity mapping of neutral hydrogen (HI) is a promising observational probe of cosmology and large-scale structure. We present wide field simulations of HI intensity maps based on N-body simulations of a 2.6 Gpc / h box with 20483 particles (particle mass 1.6 × 1011 Msolar / h). Using a conditional mass function to populate the simulated dark matter density field with halos below the mass resolution of the simulation (108 Msolar / h < Mhalo < 1013 Msolar / h), we assign HI to those halos according to a phenomenological halo to HI mass relation. The simulations span a redshift range of 0.35 lesssim z lesssim 0.9 in redshift bins of width Δ z ≈ 0.05 and cover a quarter of the sky at an angular resolution of about 7'. We use the simulated intensity maps to study the impact of non-linear effects and redshift space distortions on the angular clustering of HI. Focusing on the autocorrelations of the maps, we apply and compare several estimators for the angular power spectrum and its covariance. We verify that these estimators agree with analytic predictions on large scales and study the validity of approximations based on Gaussian random fields, particularly in the context of the covariance. We discuss how our results and the simulated maps can be useful for planning and interpreting future HI intensity mapping surveys.

  7. Plasma Suppression of Large Scale Structure Formation in the Universe

    SciTech Connect

    Chen, Pisin; Lai, Kwang-Chang

    2007-12-10

    We point out that during the reionization epoch of the cosmic history, the plasma collective effect among the ordinary matter would suppress the large scale structure formation. The imperfect Debye shielding at finite temperature would induce a residual long-range electrostatic potential which, working together with the baryon thermal pressure, would counter the gravitational collapse. As a result the effective Jean's length, {tilde {lambda}}{sub J}, is increased by a factor, {tilde {lambda}}{sub J}/{lambda}{sub J} = {radical}8/5, relative to the conventional one. For scales smaller than the effective Jean's scale the plasma would oscillate at the ion-acoustic frequency. The modes that would be influenced by this effect depend on the starting time and the initial temperature of reionization, but roughly lie in the range 0.5hMpc{sup -1} < k, which corresponds to the region of the Lyman-{alpha} forest from the inter-galactic medium. We predict that in the linear regime of density-contrast growth, the plasma suppression of the matter power spectrum would approach 1 - ({Omega}{sub dm}/{Omega}{sub m}){sup 2} {approx} 1 -(5/6){sup 2} {approx} 30%.

  8. Bias in the effective field theory of large scale structures

    SciTech Connect

    Senatore, Leonardo

    2015-11-01

    We study how to describe collapsed objects, such as galaxies, in the context of the Effective Field Theory of Large Scale Structures. The overdensity of galaxies at a given location and time is determined by the initial tidal tensor, velocity gradients and spatial derivatives of the regions of dark matter that, during the evolution of the universe, ended up at that given location. Similarly to what was recently done for dark matter, we show how this Lagrangian space description can be recovered by upgrading simpler Eulerian calculations. We describe the Eulerian theory. We show that it is perturbatively local in space, but non-local in time, and we explain the observational consequences of this fact. We give an argument for why to a certain degree of accuracy the theory can be considered as quasi time-local and explain what the operator structure is in this case. We describe renormalization of the bias coefficients so that, after this and after upgrading the Eulerian calculation to a Lagrangian one, the perturbative series for galaxies correlation functions results in a manifestly convergent expansion in powers of k/k{sub NL} and k/k{sub M}, where k is the wavenumber of interest, k{sub NL} is the wavenumber associated to the non-linear scale, and k{sub M} is the comoving wavenumber enclosing the mass of a galaxy.

  9. Bias in the effective field theory of large scale structures

    SciTech Connect

    Senatore, Leonardo

    2015-11-05

    We study how to describe collapsed objects, such as galaxies, in the context of the Effective Field Theory of Large Scale Structures. The overdensity of galaxies at a given location and time is determined by the initial tidal tensor, velocity gradients and spatial derivatives of the regions of dark matter that, during the evolution of the universe, ended up at that given location. Similarly to what was recently done for dark matter, we show how this Lagrangian space description can be recovered by upgrading simpler Eulerian calculations. We describe the Eulerian theory. We show that it is perturbatively local in space, but non-local in time, and we explain the observational consequences of this fact. We give an argument for why to a certain degree of accuracy the theory can be considered as quasi time-local and explain what the operator structure is in this case. Furthermore, we describe renormalization of the bias coefficients so that, after this and after upgrading the Eulerian calculation to a Lagrangian one, the perturbative series for galaxies correlation functions results in a manifestly convergent expansion in powers of k/kNL and k/kM, where k is the wavenumber of interest, kNL is the wavenumber associated to the non-linear scale, and kM is the comoving wavenumber enclosing the mass of a galaxy.

  10. Bias in the effective field theory of large scale structures

    DOE PAGES

    Senatore, Leonardo

    2015-11-05

    We study how to describe collapsed objects, such as galaxies, in the context of the Effective Field Theory of Large Scale Structures. The overdensity of galaxies at a given location and time is determined by the initial tidal tensor, velocity gradients and spatial derivatives of the regions of dark matter that, during the evolution of the universe, ended up at that given location. Similarly to what was recently done for dark matter, we show how this Lagrangian space description can be recovered by upgrading simpler Eulerian calculations. We describe the Eulerian theory. We show that it is perturbatively local inmore » space, but non-local in time, and we explain the observational consequences of this fact. We give an argument for why to a certain degree of accuracy the theory can be considered as quasi time-local and explain what the operator structure is in this case. Furthermore, we describe renormalization of the bias coefficients so that, after this and after upgrading the Eulerian calculation to a Lagrangian one, the perturbative series for galaxies correlation functions results in a manifestly convergent expansion in powers of k/kNL and k/kM, where k is the wavenumber of interest, kNL is the wavenumber associated to the non-linear scale, and kM is the comoving wavenumber enclosing the mass of a galaxy.« less

  11. Large-scale testing of structural clay tile infilled frames

    SciTech Connect

    Flanagan, R.D.; Bennett, R.M.

    1993-03-18

    A summary of large-scale cyclic static tests of structural clay tile infilled frames is given. In-plane racking tests examined the effects of varying frame stiffness, varying infill size, infill offset from frame centerline, and single and double wythe infill construction. Out-of-plane tests examined infilled frame response to inertial loadings and inter-story drift loadings. Sequential in-plane and out-of-plane loadings were performed to determine the effects of orthogonal damage and degradation on both strength and stiffness. A combined out-of-plane inertial and in-plane racking test was conducted to investigate the interaction of multi-directional loading. To determine constitutive properties of the infills, prism compression, mortar compression and various unit tile tests were performed.

  12. Statistics of Caustics in Large-Scale Structure Formation

    NASA Astrophysics Data System (ADS)

    Feldbrugge, Job L.; Hidding, Johan; van de Weygaert, Rien

    2016-10-01

    The cosmic web is a complex spatial pattern of walls, filaments, cluster nodes and underdense void regions. It emerged through gravitational amplification from the Gaussian primordial density field. Here we infer analytical expressions for the spatial statistics of caustics in the evolving large-scale mass distribution. In our analysis, following the quasi-linear Zel'dovich formalism and confined to the 1D and 2D situation, we compute number density and correlation properties of caustics in cosmic density fields that evolve from Gaussian primordial conditions. The analysis can be straightforwardly extended to the 3D situation. We moreover, are currently extending the approach to the non-linear regime of structure formation by including higher order Lagrangian approximations and Lagrangian effective field theory.

  13. Inflationary tensor fossils in large-scale structure

    SciTech Connect

    Dimastrogiovanni, Emanuela; Fasiello, Matteo; Jeong, Donghui; Kamionkowski, Marc E-mail: mrf65@case.edu E-mail: kamion@jhu.edu

    2014-12-01

    Inflation models make specific predictions for a tensor-scalar-scalar three-point correlation, or bispectrum, between one gravitational-wave (tensor) mode and two density-perturbation (scalar) modes. This tensor-scalar-scalar correlation leads to a local power quadrupole, an apparent departure from statistical isotropy in our Universe, as well as characteristic four-point correlations in the current mass distribution in the Universe. So far, the predictions for these observables have been worked out only for single-clock models in which certain consistency conditions between the tensor-scalar-scalar correlation and tensor and scalar power spectra are satisfied. Here we review the requirements on inflation models for these consistency conditions to be satisfied. We then consider several examples of inflation models, such as non-attractor and solid-inflation models, in which these conditions are put to the test. In solid inflation the simplest consistency conditions are already violated whilst in the non-attractor model we find that, contrary to the standard scenario, the tensor-scalar-scalar correlator probes directly relevant model-dependent information. We work out the predictions for observables in these models. For non-attractor inflation we find an apparent local quadrupolar departure from statistical isotropy in large-scale structure but that this power quadrupole decreases very rapidly at smaller scales. The consistency of the CMB quadrupole with statistical isotropy then constrains the distance scale that corresponds to the transition from the non-attractor to attractor phase of inflation to be larger than the currently observable horizon. Solid inflation predicts clustering fossils signatures in the current galaxy distribution that may be large enough to be detectable with forthcoming, and possibly even current, galaxy surveys.

  14. Reconstructing Information in Large-Scale Structure via Logarithmic Mapping

    NASA Astrophysics Data System (ADS)

    Szapudi, Istvan

    We propose to develop a new method to extract information from large-scale structure data combining two-point statistics and non-linear transformations; before, this information was available only with substantially more complex higher-order statistical methods. Initially, most of the cosmological information in large-scale structure lies in two-point statistics. With non- linear evolution, some of that useful information leaks into higher-order statistics. The PI and group has shown in a series of theoretical investigations how that leakage occurs, and explained the Fisher information plateau at smaller scales. This plateau means that even as more modes are added to the measurement of the power spectrum, the total cumulative information (loosely speaking the inverse errorbar) is not increasing. Recently we have shown in Neyrinck et al. (2009, 2010) that a logarithmic (and a related Gaussianization or Box-Cox) transformation on the non-linear Dark Matter or galaxy field reconstructs a surprisingly large fraction of this missing Fisher information of the initial conditions. This was predicted by the earlier wave mechanical formulation of gravitational dynamics by Szapudi & Kaiser (2003). The present proposal is focused on working out the theoretical underpinning of the method to a point that it can be used in practice to analyze data. In particular, one needs to deal with the usual real-life issues of galaxy surveys, such as complex geometry, discrete sam- pling (Poisson or sub-Poisson noise), bias (linear, or non-linear, deterministic, or stochastic), redshift distortions, pro jection effects for 2D samples, and the effects of photometric redshift errors. We will develop methods for weak lensing and Sunyaev-Zeldovich power spectra as well, the latter specifically targetting Planck. In addition, we plan to investigate the question of residual higher- order information after the non-linear mapping, and possible applications for cosmology. Our aim will be to work out

  15. Polymer Physics of the Large-Scale Structure of Chromatin.

    PubMed

    Bianco, Simona; Chiariello, Andrea Maria; Annunziatella, Carlo; Esposito, Andrea; Nicodemi, Mario

    2016-01-01

    We summarize the picture emerging from recently proposed models of polymer physics describing the general features of chromatin large scale spatial architecture, as revealed by microscopy and Hi-C experiments. PMID:27659986

  16. Polymer Physics of the Large-Scale Structure of Chromatin.

    PubMed

    Bianco, Simona; Chiariello, Andrea Maria; Annunziatella, Carlo; Esposito, Andrea; Nicodemi, Mario

    2016-01-01

    We summarize the picture emerging from recently proposed models of polymer physics describing the general features of chromatin large scale spatial architecture, as revealed by microscopy and Hi-C experiments.

  17. Large Scale Structure in the Epoch of Reionization

    NASA Astrophysics Data System (ADS)

    Koekemoer, Anton; Mould, Jeremy; Cooke, Jeffrey; Wyithe, Stuart; Lidman, Christopher; Trenti, Michele; Abbott, Tim; Kunder, Andrea; Barone-Nugent, Robert; Tescari, Edoardo; Katsianis, Antonios

    2014-02-01

    We propose to capitalize on the high red sensitivity and large field of view of DECam to detect the brightest and rarest galaxies at z=6-7. Our 2012 results show the signature of large scale structure with wavenumber of order 0.1 inverse Mpc in line with expectations of primordial non-gaussianity. But the signal to noise in one deep field from two nights' data is insufficient for a robust conclusion. Ten nights' data will do the job. These data will also constrain the galaxy contribution to reionization by enabling a tighter constraint on the full galaxy luminosity function, including the faint end. The observations will be executed with a cadence and depth that will enable the detection of super-luminous supernovae at z=6-7. Super-luminous supernovae are a recently observed class of supernovae that are 10-100x more luminous than typical supernovae. This class includes pair- instability supernovae that are a rare, third type of supernova explosion in which only 3 events are known. The proposed observations will greatly extend the current reach of supernovae research, examining their occurrence rate and properties near the epoch of reionization.

  18. A relativistic signature in large-scale structure

    NASA Astrophysics Data System (ADS)

    Bartolo, Nicola; Bertacca, Daniele; Bruni, Marco; Koyama, Kazuya; Maartens, Roy; Matarrese, Sabino; Sasaki, Misao; Verde, Licia; Wands, David

    2016-09-01

    In General Relativity, the constraint equation relating metric and density perturbations is inherently nonlinear, leading to an effective non-Gaussianity in the dark matter density field on large scales-even if the primordial metric perturbation is Gaussian. Intrinsic non-Gaussianity in the large-scale dark matter overdensity in GR is real and physical. However, the variance smoothed on a local physical scale is not correlated with the large-scale curvature perturbation, so that there is no relativistic signature in the galaxy bias when using the simplest model of bias. It is an open question whether the observable mass proxies such as luminosity or weak lensing correspond directly to the physical mass in the simple halo bias model. If not, there may be observables that encode this relativistic signature.

  19. Kinematics and Dynamics in Large-Scale Structure

    NASA Astrophysics Data System (ADS)

    dell'Antonio, Ian Pietro

    1995-01-01

    We study a sample of x-ray observed groups of galaxies to examine the relation between group velocity dispersions and x-ray luminosities. For the rich groups, Lx~ sigma ^{4.0+/-0.6}, but poorer systems follow a flatter relation. This L_{x }- sigma relation probably arises from a combination of extended gas and individual galaxy emission. We then concentrate on six poor clusters of galaxies with higher-quality x-ray data, and we measure the virial mass, gas mass, and x-ray temperature. From the x-ray surface brightness distribution, we construct models of the mass distribution. We use a modified V/ Vmax test to test whether the galaxies trace the potential marked by the gas. The galaxy distribution is consistent with the density distribution inferred from the x-rays. The mass in galaxies is {~}3h^{-1}% of the total mass of the systems. Galaxies contribute significantly to the baryonic mass total: M_ {gas}/Mgal ~1.4h^{-1/2},~ilar to the value for rich clusters. The baryon fraction in rich groups is {~}0.08 (for Ho=100), about half that in rich clusters. This result has significant implications for the origin of large-scale structure. In a study of structure on a larger scale, we use the Tully-Fisher (TF) relation to examine the kinematics of the Great Wall of Galaxies. First, we examine the relation between rotation profiles of galaxies and HI linewidths, and investigate the effects on the TF relation. The rotation curve profile shapes and magnitudes of galaxies are correlated, implying that a galaxy yields different distance estimates with a linewidth measured at a different fraction of peak emission. Indiscriminatingly combining data based on different measures of the "rotation velocity" into a single TF relation leads to systematic errors and biases in the velocity field. We evaluate these effects using optical rotation curves and HI linewidth data. The TF relation can be improved by adding shape parameters to characterize the HI profiles. We construct the I

  20. Very large scale structures in growing neutrino quintessence

    SciTech Connect

    Wintergerst, N.; Wetterich, C.; Pettorino, V.; Mota, D. F.

    2010-03-15

    A quintessence scalar field or cosmon interacting with neutrinos can have important effects on cosmological structure formation. Within growing neutrino models the coupling becomes effective only in recent times, when neutrinos become nonrelativistic, stopping the evolution of the cosmon. This can explain why dark energy dominates the Universe only in a rather recent epoch by relating the present dark energy density to the small mass of neutrinos. Such models predict the presence of stable neutrino lumps at supercluster scales ({approx}200 Mpc and bigger), caused by an attractive force between neutrinos which is stronger than gravity and mediated by the cosmon. We present a method to follow the initial nonlinear formation of neutrino lumps in physical space, by integrating numerically on a 3D grid nonlinear evolution equations, until virialization naturally occurs. As a first application, we show results for cosmologies with final large neutrino average mass {approx}2 eV: in this case, neutrino lumps indeed form and mimic very large cold dark matter structures, with a typical gravitational potential 10{sup -5} for a lump size {approx}10 Mpc, and reaching larger values for lumps of about 200 Mpc. A rough estimate of the cosmological gravitational potential at small k in the nonlinear regime, {Phi}{sub {nu}=}10{sup -6}(k/k{sub 0}){sup -2}, 1.2x10{sup -2} h/Mpc

  1. Cosmology from Cosmic Microwave Background and large- scale structure

    NASA Astrophysics Data System (ADS)

    Xu, Yongzhong

    2003-10-01

    This dissertation consists of a series of studies, constituting four published papers, involving the Cosmic Microwave Background and the large scale structure, which help constrain Cosmological parameters and potential systematic errors. First, we present a method for comparing and combining maps with different resolutions and beam shapes, and apply it to the Saskatoon, QMAP and COBE/DMR data sets. Although the Saskatoon and QMAP maps detect signal at the 21σ and 40σ, levels, respectively, their difference is consistent with pure noise, placing strong limits on possible systematic errors. In particular, we obtain quantitative upper limits on relative calibration and pointing errors. Splitting the combined data by frequency shows similar consistency between the Ka- and Q-bands, placing limits on foreground contamination. The visual agreement between the maps is equally striking. Our combined QMAP+Saskatoon map, nicknamed QMASK, is publicly available at www.hep.upenn.edu/˜xuyz/qmask.html together with its 6495 x 6495 noise covariance matrix. This thoroughly tested data set covers a large enough area (648 square degrees—at the time, the largest degree-scale map available) to allow a statistical comparison with LOBE/DMR, showing good agreement. By band-pass-filtering the QMAP and Saskatoon maps, we are also able to spatially compare them scale-by-scale to check for beam- and pointing-related systematic errors. Using the QMASK map, we then measure the cosmic microwave background (CMB) power spectrum on angular scales ℓ ˜ 30 200 (1° 6°), and we test it for non-Gaussianity using morphological statistics known as Minkowski functionals. We conclude that the QMASK map is neither a very typical nor a very exceptional realization of a Gaussian random field. At least about 20% of the 1000 Gaussian Monte Carlo maps differ more than the QMASK map from the mean morphological parameters of the Gaussian fields. Finally, we compute the real-space power spectrum and the

  2. Characterizing unknown systematics in large scale structure surveys

    SciTech Connect

    Agarwal, Nishant; Ho, Shirley; Myers, Adam D.; Seo, Hee-Jong; Ross, Ashley J.; Bahcall, Neta; Brinkmann, Jonathan; Eisenstein, Daniel J.; Muna, Demitri; Palanque-Delabrouille, Nathalie; Yèche, Christophe; Petitjean, Patrick; Schneider, Donald P.; Streblyanska, Alina; Weaver, Benjamin A.

    2014-04-01

    Photometric large scale structure (LSS) surveys probe the largest volumes in the Universe, but are inevitably limited by systematic uncertainties. Imperfect photometric calibration leads to biases in our measurements of the density fields of LSS tracers such as galaxies and quasars, and as a result in cosmological parameter estimation. Earlier studies have proposed using cross-correlations between different redshift slices or cross-correlations between different surveys to reduce the effects of such systematics. In this paper we develop a method to characterize unknown systematics. We demonstrate that while we do not have sufficient information to correct for unknown systematics in the data, we can obtain an estimate of their magnitude. We define a parameter to estimate contamination from unknown systematics using cross-correlations between different redshift slices and propose discarding bins in the angular power spectrum that lie outside a certain contamination tolerance level. We show that this method improves estimates of the bias using simulated data and further apply it to photometric luminous red galaxies in the Sloan Digital Sky Survey as a case study.

  3. Constraints on modified Chaplygin gas from large scale structure

    NASA Astrophysics Data System (ADS)

    Paul, Bikash Chandra; Thakur, Prasenjit; Beesham, Aroon

    2016-10-01

    We study cosmological models with modified Chaplygin gas (MCG) to determine observational constraints on its EoS parameters using the background and the growth tests data. The background test data consists of H(z)-z data, Baryonic Acoustic Oscillations peak parameter, CMB shift parameter, SN Ia data and the growth test data consists of the linear growth function for the large scale structures of the universe are considered to study MCG in favor of dark energy. For a given range of redshift, the Wiggle-Z measurements and rms mass fluctuations from Ly-α data, employed for analyzing cosmological models numerically to constrain the MCG parameters. The Wang-Steinhardt ansatz for the growth index (γ ) and growth function (f) are also considered for numerical analysis. The best-fit values of EoS parameters determined here are used to study the variation of f, growth index (γ ), EoS parameter, squared sound speed and deceleration parameter with redshift. The constraints on the MCG parameters found here are compared with that of GCG (generalized Chaplygin gas) model for viable cosmology. Cosmologies with MCG satisfactorily describe late acceleration followed by a matter dominated phase. The range of values of EoS parameters, the associated parameters (f, γ , ω , Ω, c2s, q) are also determined from observational data in order to understand the suitability of the MCG model.

  4. Geometric algorithms for electromagnetic modeling of large scale structures

    NASA Astrophysics Data System (ADS)

    Pingenot, James

    With the rapid increase in the speed and complexity of integrated circuit designs, 3D full wave and time domain simulation of chip, package, and board systems becomes more and more important for the engineering of modern designs. Much effort has been applied to the problem of electromagnetic (EM) simulation of such systems in recent years. Major advances in boundary element EM simulations have led to O(n log n) simulations using iterative methods and advanced Fast. Fourier Transform (FFT), Multi-Level Fast Multi-pole Methods (MLFMM), and low-rank matrix compression techniques. These advances have been augmented with an explosion of multi-core and distributed computing technologies, however, realization of the full scale of these capabilities has been hindered by cumbersome and inefficient geometric processing. Anecdotal evidence from industry suggests that users may spend around 80% of turn-around time manipulating the geometric model and mesh. This dissertation addresses this problem by developing fast and efficient data structures and algorithms for 3D modeling of chips, packages, and boards. The methods proposed here harness the regular, layered 2D nature of the models (often referred to as "2.5D") to optimize these systems for large geometries. First, an architecture is developed for efficient storage and manipulation of 2.5D models. The architecture gives special attention to native representation of structures across various input models and special issues particular to 3D modeling. The 2.5D structure is then used to optimize the mesh systems First, circuit/EM co-simulation techniques are extended to provide electrical connectivity between objects. This concept is used to connect independently meshed layers, allowing simple and efficient 2D mesh algorithms to be used in creating a 3D mesh. Here, adaptive meshing is used to ensure that the mesh accurately models the physical unknowns (current and charge). Utilizing the regularized nature of 2.5D objects and

  5. Large-scale structure in f(T) gravity

    SciTech Connect

    Li Baojiu; Sotiriou, Thomas P.; Barrow, John D.

    2011-05-15

    In this work we study the cosmology of the general f(T) gravity theory. We express the modified Einstein equations using covariant quantities, and derive the gauge-invariant perturbation equations in covariant form. We consider a specific choice of f(T), designed to explain the observed late-time accelerating cosmic expansion without including an exotic dark energy component. Our numerical solution shows that the extra degree of freedom of such f(T) gravity models generally decays as one goes to smaller scales, and consequently its effects on scales such as galaxies and galaxies clusters are small. But on large scales, this degree of freedom can produce large deviations from the standard {Lambda}CDM scenario, leading to severe constraints on the f(T) gravity models as an explanation to the cosmic acceleration.

  6. Interloper bias in future large-scale structure surveys

    NASA Astrophysics Data System (ADS)

    Pullen, Anthony R.; Hirata, Christopher M.; Doré, Olivier; Raccanelli, Alvise

    2016-02-01

    Next-generation spectroscopic surveys will map the large-scale structure of the observable universe, using emission line galaxies as tracers. While each survey will map the sky with a specific emission line, interloping emission lines can masquerade as the survey's intended emission line at different redshifts. Interloping lines from galaxies that are not removed can contaminate the power spectrum measurement, mixing correlations from various redshifts and diluting the true signal. We assess the potential for power spectrum contamination, finding that an interloper fraction worse than 0.2% could bias power spectrum measurements for future surveys by more than 10% of statistical errors, while also biasing power spectrum inferences. We also construct a formalism for predicting cosmological parameter measurement bias, demonstrating that a 0.15%-0.3% interloper fraction could bias the growth rate by more than 10% of the error, which can affect constraints on gravity from upcoming surveys. We use the COSMOS Mock Catalog (CMC), with the emission lines rescaled to better reproduce recent data, to predict potential interloper fractions for the Prime Focus Spectrograph (PFS) and the Wide-Field InfraRed Survey Telescope (WFIRST). We find that secondary line identification, or confirming galaxy redshifts by finding correlated emission lines, can remove interlopers for PFS. For WFIRST, we use the CMC to predict that the 0.2% target can be reached for the WFIRST Hα survey, but sensitive optical and near-infrared photometry will be required. For the WFIRST [O III] survey, the predicted interloper fractions reach several percent and their effects will have to be estimated and removed statistically (e.g., with deep training samples). These results are optimistic as the CMC does not capture the full set of correlations of galaxy properties in the real Universe, and they do not include blending effects. Mitigating interloper contamination will be crucial to the next generation of

  7. Soft-Pion theorems for large scale structure

    NASA Astrophysics Data System (ADS)

    Horn, Bart; Hui, Lam; Xiao, Xiao

    2014-09-01

    Consistency relations — which relate an N-point function to a squeezed (N+1)-point function — are useful in large scale structure (LSS) because of their non-perturbative nature: they hold even if the N-point function is deep in the nonlinear regime, and even if they involve astrophysically messy galaxy observables. The non-perturbative nature of the consistency relations is guaranteed by the fact that they are symmetry statements, in which the velocity plays the role of the soft pion. In this paper, we address two issues: (1) how to derive the relations systematically using the residual coordinate freedom in the Newtonian gauge, and relate them to known results in ζ-gauge (often used in studies of inflation); (2) under what conditions the consistency relations are violated. In the non-relativistic limit, our derivation reproduces the Newtonian consistency relation discovered by Kehagias & Riotto and Peloso & Pietroni. More generally, there is an infinite set of consistency relations, as is known in ζ-gauge. There is a one-to-one correspondence between symmetries in the two gauges; in particular, the Newtonian consistency relation follows from the dilation and special conformal symmetries in ζ-gauge. We probe the robustness of the consistency relations by studying models of galaxy dynamics and biasing. We give a systematic list of conditions under which the consistency relations are violated; violations occur if the galaxy bias is non-local in an infrared divergent way. We emphasize the relevance of the adiabatic mode condition, as distinct from symmetry considerations. As a by-product of our investigation, we discuss a simple fluid Lagrangian for LSS.

  8. CME Interaction with Large-Scale Coronal Structures

    NASA Technical Reports Server (NTRS)

    Gopalswarny, Nat

    2012-01-01

    This talk presents some key observations that highlight the importance of CME interaction with other large scale structures such as CMEs and coronal holes . Such interactions depend on the phase of the solar cycle: during maximum, CMEs are ejected more frequently, so CME-CME interaction becomes dominant. During the rise phase, the polar coronal holes are strong, so the interaction between polar coronal holes and CMEs is important, which also leads to a possible increase in the number of interplanetary CMEs observed as magnetic clouds. During the declining phase, there are more equatorial coronal holes, so CMEs originating near these coronal holes are easily deflected. CMEs can be deflected toward and away from the Sun-Earth line resulting in interesting geospace consequences. For example, the largest geomagnetic storm of solar cycle 23 was due to a CME that was deflected towards the Sun-earth line from E22. CME deflection away from the Sun-Earth line diminishes the chance of a CME producing a geomagnetic storm. CME interaction in the coronagraphic field of view was first identified using enhanced radio emission, which is an indication of acceleration of low energy (approx.10 keV) electrons in the interaction site. CME interaction, therefore, may also have implications for proton acceleration. For example, solar energetic particle events typically occur with a higher intensity, whenever multiple CMEs occur in quick succession from the same source region. CME deflection may also have implications to the arrival of energetic particles to earth because magnetic connectivity may be changed by the interaction. I illustrate the above points using examples from SOHO, STEREO, Wind, and ACE data .

  9. Soft-Pion theorems for large scale structure

    SciTech Connect

    Horn, Bart; Hui, Lam; Xiao, Xiao E-mail: lhui@astro.columbia.edu

    2014-09-01

    Consistency relations — which relate an N-point function to a squeezed (N+1)-point function — are useful in large scale structure (LSS) because of their non-perturbative nature: they hold even if the N-point function is deep in the nonlinear regime, and even if they involve astrophysically messy galaxy observables. The non-perturbative nature of the consistency relations is guaranteed by the fact that they are symmetry statements, in which the velocity plays the role of the soft pion. In this paper, we address two issues: (1) how to derive the relations systematically using the residual coordinate freedom in the Newtonian gauge, and relate them to known results in ζ-gauge (often used in studies of inflation); (2) under what conditions the consistency relations are violated. In the non-relativistic limit, our derivation reproduces the Newtonian consistency relation discovered by Kehagias and Riotto and Peloso and Pietroni. More generally, there is an infinite set of consistency relations, as is known in ζ-gauge. There is a one-to-one correspondence between symmetries in the two gauges; in particular, the Newtonian consistency relation follows from the dilation and special conformal symmetries in ζ-gauge. We probe the robustness of the consistency relations by studying models of galaxy dynamics and biasing. We give a systematic list of conditions under which the consistency relations are violated; violations occur if the galaxy bias is non-local in an infrared divergent way. We emphasize the relevance of the adiabatic mode condition, as distinct from symmetry considerations. As a by-product of our investigation, we discuss a simple fluid Lagrangian for LSS.

  10. Multidomain decomposition approach to large scale electronic structure calculations

    NASA Astrophysics Data System (ADS)

    Varga, Kalman

    2010-03-01

    A first-principles electronic structure calculation is presented using a domain decomposition technique. The domain decomposition leads to block tridiagonal Hamiltonian and overlap matrices. With the help of an LDL decomposition the block tridiagonal structure can be exploited and the Kohn-Sham states and/or the electron density can be calculated in an computationally efficient way. The electron density can be calculated from the Green's function or from the eigensolution obtained using subspace iteration. In both cases, the calculation of the density is divided into a series of independent computations that can be done in parallel. This approach allows us to determine tens of thousands of eigenstates with any desired accuracy. If the Kohn-Sham states are not required, the density can be calculated from the Green's function in a linearly scaling fashion. The linear scaling is achieved by using the special structure resulting from the domain decomposition and not by truncation or cutoff.

  11. Measuring Cosmic Expansion and Large Scale Structure with Destiny

    NASA Technical Reports Server (NTRS)

    Benford, Dominic J.; Lauer, Tod R.

    2007-01-01

    Destiny is a simple, direct, low cost mission to determine the properties of dark energy by obtaining a cosmologically deep supernova (SN) type Ia Hubble diagram and by measuring the large-scale mass power spectrum over time. Its science instrument is a 1.65m space telescope, featuring a near-infrared survey camera/spectrometer with a large field of view. During its first two years, Destiny will detect, observe, and characterize 23000 SN Ia events over the redshift interval 0.4lo00 square degrees to measure the large-scale mass power spectrum. The combination of surveys is much more powerful than either technique on its own, and will have over an order of magnitude greater sensitivity than will be provided by ongoing ground-based projects.

  12. Local Large-Scale Structure and the Assumption of Homogeneity

    NASA Astrophysics Data System (ADS)

    Keenan, Ryan C.; Barger, Amy J.; Cowie, Lennox L.

    2016-10-01

    Our recent estimates of galaxy counts and the luminosity density in the near-infrared (Keenan et al. 2010, 2012) indicated that the local universe may be under-dense on radial scales of several hundred megaparsecs. Such a large-scale local under-density could introduce significant biases in the measurement and interpretation of cosmological observables, such as the inferred effects of dark energy on the rate of expansion. In Keenan et al. (2013), we measured the K-band luminosity density as a function of distance from us to test for such a local under-density. We made this measurement over the redshift range 0.01 < z < 0.2 (radial distances D ~ 50 - 800 h 70 -1 Mpc). We found that the shape of the K-band luminosity function is relatively constant as a function of distance and environment. We derive a local (z < 0.07, D < 300 h 70 -1 Mpc) K-band luminosity density that agrees well with previously published studies. At z > 0.07, we measure an increasing luminosity density that by z ~ 0.1 rises to a value of ~ 1.5 times higher than that measured locally. This implies that the stellar mass density follows a similar trend. Assuming that the underlying dark matter distribution is traced by this luminous matter, this suggests that the local mass density may be lower than the global mass density of the universe at an amplitude and on a scale that is sufficient to introduce significant biases into the measurement of basic cosmological observables. At least one study has shown that an under-density of roughly this amplitude and scale could resolve the apparent tension between direct local measurements of the Hubble constant and those inferred by Planck team. Other theoretical studies have concluded that such an under-density could account for what looks like an accelerating expansion, even when no dark energy is present.

  13. CONSTRAINING PRIMORDIAL MAGNETIC FIELDS THROUGH LARGE-SCALE STRUCTURE

    SciTech Connect

    Kahniashvili, Tina; Natarajan, Aravind; Battaglia, Nicholas; Maravin, Yurii; Tevzadze, Alexander G.

    2013-06-10

    We study primordial magnetic field effects on the matter perturbations in the universe. We assume magnetic field generation prior to the big bang nucleosynthesis (BBN), i.e., during the radiation-dominated epoch of the universe expansion, but do not limit analysis by considering a particular magnetogenesis scenario. Contrary to previous studies, we limit the total magnetic field energy density and not the smoothed amplitude of the magnetic field at large (of the order of 1 Mpc) scales. We review several cosmological signatures, such as halo abundance, thermal Sunyaev-Zel'dovich effect, and Ly{alpha} data. For a cross-check, we compare our limits with that obtained through the cosmic microwave background faraday rotation effect and BBN. The limits range between 1.5 nG and 4.5 nG for n{sub B} in (- 3; -1.5).

  14. The large-scale structure of the Universe.

    PubMed

    Springel, Volker; Frenk, Carlos S; White, Simon D M

    2006-04-27

    Research over the past 25 years has led to the view that the rich tapestry of present-day cosmic structure arose during the first instants of creation, where weak ripples were imposed on the otherwise uniform and rapidly expanding primordial soup. Over 14 billion years of evolution, these ripples have been amplified to enormous proportions by gravitational forces, producing ever-growing concentrations of dark matter in which ordinary gases cool, condense and fragment to make galaxies. This process can be faithfully mimicked in large computer simulations, and tested by observations that probe the history of the Universe starting from just 400,000 years after the Big Bang.

  15. Cosmological implications of the CMB large-scale structure

    SciTech Connect

    Melia, Fulvio

    2015-01-01

    The Wilkinson Microwave Anisotropy Probe (WMAP) and Planck may have uncovered several anomalies in the full cosmic microwave background (CMB) sky that could indicate possible new physics driving the growth of density fluctuations in the early universe. These include an unusually low power at the largest scales and an apparent alignment of the quadrupole and octopole moments. In a ΛCDM model where the CMB is described by a Gaussian Random Field, the quadrupole and octopole moments should be statistically independent. The emergence of these low probability features may simply be due to posterior selections from many such possible effects, whose occurrence would therefore not be as unlikely as one might naively infer. If this is not the case, however, and if these features are not due to effects such as foreground contamination, their combined statistical significance would be equal to the product of their individual significances. In the absence of such extraneous factors, and ignoring the biasing due to posterior selection, the missing large-angle correlations would have a probability as low as ∼0.1% and the low-l multipole alignment would be unlikely at the ∼4.9% level; under the least favorable conditions, their simultaneous observation in the context of the standard model could then be likely at only the ∼0.005% level. In this paper, we explore the possibility that these features are indeed anomalous, and show that the corresponding probability of CMB multipole alignment in the R{sub h}=ct universe would then be ∼7–10%, depending on the number of large-scale Sachs–Wolfe induced fluctuations. Since the low power at the largest spatial scales is reproduced in this cosmology without the need to invoke cosmic variance, the overall likelihood of observing both of these features in the CMB is ⩾7%, much more likely than in ΛCDM, if the anomalies are real. The key physical ingredient responsible for this difference is the existence in the former of a

  16. Cosmological parameter estimation with large scale structure observations

    SciTech Connect

    Dio, Enea Di; Montanari, Francesco; Durrer, Ruth; Lesgourgues, Julien E-mail: Francesco.Montanari@unige.ch E-mail: Julien.Lesgourgues@cern.ch

    2014-01-01

    We estimate the sensitivity of future galaxy surveys to cosmological parameters, using the redshift dependent angular power spectra of galaxy number counts, C{sub ℓ}(z{sub 1},z{sub 2}), calculated with all relativistic corrections at first order in perturbation theory. We pay special attention to the redshift dependence of the non-linearity scale and present Fisher matrix forecasts for Euclid-like and DES-like galaxy surveys. We compare the standard P(k) analysis with the new C{sub ℓ}(z{sub 1},z{sub 2}) method. We show that for surveys with photometric redshifts the new analysis performs significantly better than the P(k) analysis. For spectroscopic redshifts, however, the large number of redshift bins which would be needed to fully profit from the redshift information, is severely limited by shot noise. We also identify surveys which can measure the lensing contribution and we study the monopole, C{sub 0}(z{sub 1},z{sub 2})

  17. Imaging Large Scale Structure in the X-ray Sky

    NASA Technical Reports Server (NTRS)

    Yang, Y.; Mushotzky, R. F.; Barger, A. J.; Cowie, L. L.; Sanders, D. B.; Steefen, A. T.

    2003-01-01

    We present the first results of a wide solid angle, moderately deep Chandra survey of the Lockman Hole North West Region. Our 9 ACIS-I fields cover an effective solid angle of 0.33 sq deg and reach a depth of 3 x 10(exp -16) erg/sq cm/s in the 0.4-2 keV band, and 3 x 10(exp -15) erg/sq cm/s in the 2-8 keV band. The best fit logN-logS for the entire field, the largest contiguous Chandra field yet observed, matches well onto that of the Chandra Deep Field North. This indicates that over 90% of the 2-8 keV X-ray background is resolved into point sources. We show that the full range of the 'cosmic variance' previously seen in different Chandra fields can be reproduced in a small region of the sky. The count-in-cells analysis shows that the 2-10 keV band sources have much larger angular correlation scale than that of the 0.4-2 keV band. We found the large difference is likely to be caused by a stronger spatial correlation in the hard band sources rather than the redshift effect.

  18. Could the electroweak scale be linked to the large scale structure of the Universe?

    NASA Technical Reports Server (NTRS)

    Chakravorty, Alak; Massarotti, Alessandro

    1991-01-01

    We study a model where the domain walls are generated through a cosmological phase transition involving a scalar field. We assume the existence of a coupling between the scalar field and dark matter and show that the interaction between domain walls and dark matter leads to an energy dependent reflection mechanism. For a simple Yakawa coupling, we find that the vacuum expectation value of the scalar field is theta approx. equals 30GeV - 1TeV, in order for the model to be successful in the formation of large scale 'pancake' structures.

  19. On soft limits of large-scale structure correlation functions

    NASA Astrophysics Data System (ADS)

    Ben-Dayan, Ido; Konstandin, Thomas; Porto, Rafael A.; Sagunski, Laura

    2015-02-01

    We study soft limits of correlation functions for the density and velocity fields in the theory of structure formation. First, we re-derive the (resummed) consistency conditions at unequal times using the eikonal approximation. These are solely based on symmetry arguments and are therefore universal. Then, we explore the existence of equal-time relations in the soft limit which, on the other hand, depend on the interplay between soft and hard modes. We scrutinize two approaches in the literature: the time-flow formalism, and a background method where the soft mode is absorbed into a locally curved cosmology. The latter has been recently used to set up (angular averaged) `equal-time consistency relations'. We explicitly demonstrate that the time-flow relations and `equal-time consistency conditions' are only fulfilled at the linear level, and fail at next-to-leading order for an Einstein de-Sitter universe. While applied to the velocities both proposals break down beyond leading order, we find that the `equal-time consistency conditions' quantitatively approximates the perturbative results for the density contrast. Thus, we generalize the background method to properly incorporate the effect of curvature in the density and velocity fluctuations on short scales, and discuss the reasons behind this discrepancy. We conclude with a few comments on practical implementations and future directions.

  20. Rich Linguistic Structure from Large-Scale Web Data

    ERIC Educational Resources Information Center

    Yamangil, Elif

    2013-01-01

    The past two decades have shown an unexpected effectiveness of "Web-scale" data in natural language processing. Even the simplest models, when paired with unprecedented amounts of unstructured and unlabeled Web data, have been shown to outperform sophisticated ones. It has been argued that the effectiveness of Web-scale data has…

  1. Linearly Scaling 3D Fragment Method for Large-Scale Electronic Structure Calculations

    SciTech Connect

    Wang, Lin-Wang; Lee, Byounghak; Shan, Hongzhang; Zhao, Zhengji; Meza, Juan; Strohmaier, Erich; Bailey, David H.

    2008-07-01

    We present a new linearly scaling three-dimensional fragment (LS3DF) method for large scale ab initio electronic structure calculations. LS3DF is based on a divide-and-conquer approach, which incorporates a novel patching scheme that effectively cancels out the artificial boundary effects due to the subdivision of the system. As a consequence, the LS3DF program yields essentially the same results as direct density functional theory (DFT) calculations. The fragments of the LS3DF algorithm can be calculated separately with different groups of processors. This leads to almost perfect parallelization on tens of thousands of processors. After code optimization, we were able to achieve 35.1 Tflop/s, which is 39percent of the theoretical speed on 17,280 Cray XT4 processor cores. Our 13,824-atom ZnTeO alloy calculation runs 400 times faster than a direct DFTcalculation, even presuming that the direct DFT calculation can scale well up to 17,280 processor cores. These results demonstrate the applicability of the LS3DF method to material simulations, the advantage of using linearly scaling algorithms over conventional O(N3) methods, and the potential for petascale computation using the LS3DF method.

  2. A Large-Scale Structural Classification of Antimicrobial Peptides

    PubMed Central

    Lee, Chen-Che; Yang, Je-Ruei; Lai, Jim Z. C.

    2015-01-01

    Antimicrobial peptides (AMPs) are potent drug candidates against microbial organisms such as bacteria, fungi, parasites, and viruses. AMPs have abundant sequences and structures, two fundamental resources for bioinformatics researches, but analyses on how they associate with each other are either nonexistent or limited to partial classification and data. We thus present A Database of Anti-Microbial peptides (ADAM), which contains 7,007 unique sequences and 759 structures, to systematically establish comprehensive associations between AMP sequences and structures through structural folds and to provide an easy access to view their relationships. 30 distinct AMP structural fold clusters with more than one structure are detected and about a thousand AMPs are associated with at least one structural fold cluster. According to ADAM, AMP structural folds are limited—AMPs only cover about 3% of the overall protein fold space. PMID:26000295

  3. The large-scale structure of software-intensive systems

    PubMed Central

    Booch, Grady

    2012-01-01

    The computer metaphor is dominant in most discussions of neuroscience, but the semantics attached to that metaphor are often quite naive. Herein, we examine the ontology of software-intensive systems, the nature of their structure and the application of the computer metaphor to the metaphysical questions of self and causation. PMID:23386964

  4. Large Scale Structure at 24 Microns in the SWIRE Survey

    NASA Astrophysics Data System (ADS)

    Masci, F. J.; SWIRE Team

    2006-12-01

    We present initial results of galaxy clustering at 24μm by analyzing statistics of the projected galaxy distribution from counts-in-cells. This study focuses on the ELAIS-North1 SWIRE field. The sample covers ≃5.9 deg2 and contains 24,715 sources detected at 24μm to a 5.6σ limit of 250μJy (in the lowest coverage regions). We have explored clustering as a function of 3.6 - 24μm and 24μm flux density using angular-averaged two-point correlation functions derived from the variance of counts-in-cells on scales 0°.05-0°.7. Using a power-law parameterization, w2(θ)=A(θ/deg)1-γ, we find [A,γ] = [(5.43±0.20)×10-4,2.01±0.02] for the full sample (1σ errors throughout). We have inverted Limber's equation and estimated a spatial correlation length of r0=3.32±0.19 h-1Mpc for the full sample, assuming stable clustering and a redshift model consistent with observed 24μm counts. We also find that blue [fν(24)/fν(3.6)≤5.5] and red [fν(24)/fν(3.6)≥6.5] galaxies have the lowest and highest r0 values respectively, implying that redder galaxies are more clustered (by a factor of ≈3 on scales ⪆0°.2). Overall, the clustering estimates are smaller than those derived from optical surveys, but in agreement with results from IRAS and ISO in the mid-infrared. This extends the notion to higher redshifts that infrared selected surveys show weaker clustering than optical surveys.

  5. Mapping matter jointly with CMB lensing and Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Huffenberger, Kevin; Maldonado, Felipe; Rotti, Aditya

    2015-04-01

    In the near future, Stage III and Stage IV Cosmic Microwave Background experiments will measure to high precision the lensing distortions that trace matter fluctuations in the universe. On a similar timescale, WFIRST, EUCLID, DESI, LSST, and other surveys will provide galaxy redshift information, imaging, and cosmic shear data over large regions of the sky. Taking a holistic, Bayesian approach to combine datasets, we seek to understand keenly the statistical properties of joint estimates of the matter distribution and its correlations, including their non-Gaussian likelihoods.

  6. Mapping matter jointly with CMB lensing and Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Huffenberger, Kevin; Rotti, Aditya; Maldonado, Felipe

    2016-01-01

    In the near future, Stage III and Stage IV Cosmic Microwave Background experiments will measure to high precision the lensing distortions that trace matter fluctuations in the universe. On a similar timescale DES, HSC, WFIRST, EUCLID, DESI, LSST, and other surveys will provide galaxy redshift information, imaging, and cosmic shear data over large regions of the sky. Taking a holistic, Bayesian approach to combine datasets, we seek to understand the statistical properties of joint estimates of the matter distribution and its correlations, including their non-Gaussian likelihoods.

  7. Skewness-induced asymmetric modulation of small-scale turbulence by large-scale structures

    NASA Astrophysics Data System (ADS)

    Agostini, Lionel; Leschziner, Michael; Gaitonde, Datta

    2016-01-01

    Several recent studies discuss of role of skewness of the turbulent velocity fluctuations in near-wall shear layers, in the context of quantifying the correlation between large-scale motions and amplitude variations of small-scale fluctuations—referred to as "modulation." The present study is based on the premise that the skewness of the small-scale fluctuations should be accounted for explicitly in the process of defining their envelope, which characterizes their amplitude variations. This leads to the notion of two envelopes, one for positive and the other for negative small-scale fluctuations, and hence also to two corresponding correlation coefficients. Justification for this concept is provided first by an examination of a high-frequency synthetic signal subjected to realistic skewness-inducing modulation. A new formalism is provided for deriving the two envelopes, and its fidelity is demonstrated for the synthetic test case. The method is then applied to a channel flow at a friction Reynolds number of 4200, for which direct numerical simulation (DNS) data are available. The large-scale and small-scale fields are separated by the empirical mode decomposition method, and the modulation of the small-scale fluctuations by the large scales is examined. Separate maps of the correlation coefficient and of two-point correlations, the latter linking the large-scale motions and the envelopes of the small-scale motions, are derived for the two envelopes pertaining to positive and negative small-scale fluctuations, and these demonstrate a significant sensitivity to the envelope-definition process, especially close to the wall where the skewness of the small-scale fluctuations is the dominant contributor to the total value.

  8. Large-Scale Unsupervised Hashing with Shared Structure Learning.

    PubMed

    Liu, Xianglong; Mu, Yadong; Zhang, Danchen; Lang, Bo; Li, Xuelong

    2015-09-01

    Hashing methods are effective in generating compact binary signatures for images and videos. This paper addresses an important open issue in the literature, i.e., how to learn compact hash codes by enhancing the complementarity among different hash functions. Most of prior studies solve this problem either by adopting time-consuming sequential learning algorithms or by generating the hash functions which are subject to some deliberately-designed constraints (e.g., enforcing hash functions orthogonal to one another). We analyze the drawbacks of past works and propose a new solution to this problem. Our idea is to decompose the feature space into a subspace shared by all hash functions and its complementary subspace. On one hand, the shared subspace, corresponding to the common structure across different hash functions, conveys most relevant information for the hashing task. Similar to data de-noising, irrelevant information is explicitly suppressed during hash function generation. On the other hand, in case that the complementary subspace also contains useful information for specific hash functions, the final form of our proposed hashing scheme is a compromise between these two kinds of subspaces. To make hash functions not only preserve the local neighborhood structure but also capture the global cluster distribution of the whole data, an objective function incorporating spectral embedding loss, binary quantization loss, and shared subspace contribution is introduced to guide the hash function learning. We propose an efficient alternating optimization method to simultaneously learn both the shared structure and the hash functions. Experimental results on three well-known benchmarks CIFAR-10, NUS-WIDE, and a-TRECVID demonstrate that our approach significantly outperforms state-of-the-art hashing methods.

  9. Simulations of the formation of large-scale structure

    NASA Astrophysics Data System (ADS)

    White, S. D. M.

    Numerical studies related to the simulation of structure growth are examined. The linear development of fluctuations in the early universe is studied. The research of Aarseth, Gott, and Turner (1979) based on N-body integrators that obtained particle accelerations by direct summation of the forces due to other objects is discussed. Consideration is given to the 'pancake theory' of Zel'dovich (1970) for the evolution from adiabatic initial fluctuation, the neutrino-dominated universe models of White, Frenk, and Davis (1983), and the simulations of Davis et al. (1985).

  10. The Study of Clusters of Galaxies and Large Scale Structures

    NASA Technical Reports Server (NTRS)

    1998-01-01

    The work on the ROSAT Deep Survey has been successfully completed. A number of interesting results have been established within this joint MPE, Cal Tech, JHU, ST Scl, ESO collaboration. First, a very large fraction, 70-80 percent, of the X-ray background has been directly resolved into point sources. We have derived a new log N-log S for X- ray sources and have measured a source density of 970 sources per square degree at a limiting flux level of 10(exp -15)/erg s sq cm (0.5-2.0 keV). Care was taken in these studies to accurately model and measure the effects of sources confusion. This was possible because of our observing strategy which included both deep PSPC and HRI observations. In the last year we initiated work in the design and development of the Next Generation Space Telescope.

  11. Single-field consistency relations of large scale structure

    SciTech Connect

    Creminelli, Paolo; Noreña, Jorge; Simonović, Marko; Vernizzi, Filippo E-mail: jorge.norena@icc.ub.edu E-mail: filippo.vernizzi@cea.fr

    2013-12-01

    We derive consistency relations for the late universe (CDM and ΛCDM): relations between an n-point function of the density contrast δ and an (n+1)-point function in the limit in which one of the (n+1) momenta becomes much smaller than the others. These are based on the observation that a long mode, in single-field models of inflation, reduces to a diffeomorphism since its freezing during inflation all the way until the late universe, even when the long mode is inside the horizon (but out of the sound horizon). These results are derived in Newtonian gauge, at first and second order in the small momentum q of the long mode and they are valid non-perturbatively in the short-scale δ. In the non-relativistic limit our results match with [1]. These relations are a consequence of diffeomorphism invariance; they are not satisfied in the presence of extra degrees of freedom during inflation or violation of the Equivalence Principle (extra forces) in the late universe.

  12. The linearly scaling 3D fragment method for large scale electronic structure calculations

    SciTech Connect

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-07-28

    The Linearly Scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  13. The Linearly Scaling 3D Fragment Method for Large Scale Electronic Structure Calculations

    SciTech Connect

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-06-26

    The Linearly Scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  14. The linearly scaling 3D fragment method for large scale electronic structure calculations

    NASA Astrophysics Data System (ADS)

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-07-01

    The linearly scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  15. Imprints of massive primordial fields on large-scale structure

    NASA Astrophysics Data System (ADS)

    Dimastrogiovanni, Emanuela; Fasiello, Matteo; Kamionkowski, Marc

    2016-02-01

    Attention has focussed recently on models of inflation that involve a second or more fields with a mass near the inflationary Hubble parameter H, as may occur in supersymmetric theories if the supersymmetry-breaking scale is not far from H. Quasi-single-field (QsF) inflation is a relatively simple family of phenomenological models that serve as a proxy for theories with additional fields with masses m~ H. Since QsF inflation involves fields in addition to the inflaton, the consistency conditions between correlations that arise in single-clock inflation are not necessarily satisfied. As a result, correlation functions in the squeezed limit may be larger than in single-field inflation. Scalar non-Gaussianities mediated by the massive isocurvature field in QsF have been shown to be potentially observable. These are especially interesting since they would convey information about the mass of the isocurvature field. Here we consider non-Gaussian correlators involving tensor modes and their observational signatures. A physical correlation between a (long-wavelength) tensor mode and two scalar modes (tss), for instance, may give rise to local departures from statistical isotropy or, in other words, a non-trivial four-point function. The presence of the tensor mode may moreover be inferred geometrically from the shape dependence of the four-point function. We compute tss and stt (one soft curvature mode and two hard tensors) bispectra in QsF inflation, identifying the conditions necessary for these to "violate" the consistency relations. We find that while consistency conditions are violated by stt correlations, they are preserved by the tss in the minimal QsF model. Our study of primordial correlators which include gravitons in seeking imprints of additional fields with masses m~ H during inflation can be seen as complementary to the recent ``cosmological collider physics'' proposal.

  16. Cosmic string wakes and large-scale structure

    NASA Technical Reports Server (NTRS)

    Charlton, Jane C.

    1988-01-01

    The formation of structure from infinite cosmic string wakes is modeled for a universe dominated by cold dark matter (CDM). Cross-sectional slices through the wake distribution tend to outline empty regions with diameters which are not inconsistent with the range of sizes of the voids in the CfA slice of the universe. The topology of the wake distribution is found to be spongy rather than cell-like. Correlations between CDM wakes do not extend much beyond a horizon length, so it is unlikely that CDM wakes are responsible for the correlations between clusters of galaxies. An estimate of the fraction of matter to accrete onto CDM wakes indicates that wakes could be more important in galaxy formation than previously anticipated.

  17. Testing coupled dark energy with large scale structure observation

    SciTech Connect

    Yang, Weiqiang; Xu, Lixin E-mail: lxxu@dlut.edu.cn

    2014-08-01

    The coupling between the dark components provides a new approach to mitigate the coincidence problem of cosmological standard model. In this paper, dark energy is treated as a fluid with a constant equation of state, whose coupling with dark matter is Q-bar =3Hξ{sub x}ρ-bar {sub x}. In the frame of dark energy, we derive the evolution equations for the density and velocity perturbations. According to the Markov Chain Monte Carlo method, we constrain the model by currently available cosmic observations which include cosmic microwave background radiation, baryon acoustic oscillation, type Ia supernovae, and fσ{sub 8}(z) data points from redshift-space distortion. The results show the interaction rate in σ regions: ξ{sub x} = 0.00328{sub -0.00328-0.00328-0.00328}{sup +0.000736+0.00549+0.00816}, which means that the recently cosmic observations favor a small interaction rate which is up to the order of 10{sup -2}, meanwhile, the measurement of redshift-space distortion could rule out the large interaction rate in the σ region.

  18. The Study of Clusters of Galaxies and Large Scale Structures

    NASA Technical Reports Server (NTRS)

    1998-01-01

    Many research projects have been initiated and completed under support of this program. The results are summarized below. The work on the ROSAT Deep Survey has been successfully completed. A number of interesting results have been established within this joint MPE, Cal Tech, JHU, ST ScI, ESO collaboration. First, a very large fraction, 70-80 percent, of the X-ray background has been directly resolved into point sources. We have derived a new log N-log S for X-ray sources and have measured a source density of 970 sources per square degree at a limiting flux level. Care was taken in these studies to accurately model and measure the effects of sources confusion. This was possible because of our observing strategy which included both deep PSPC and HRI observations. No evidence of a population of narrow emission line galaxies has been established but some evidence for the evolution of low luminosity AGN (Seyfert galaxies) has been reported. The work on the ROSAT All Sky Survey Northern Cluster Survey has been substantially concluded but the publication of the list has been held up by the need to analyze newly re-calibrated data. This should result in publication over the next year. During the past year we have submitted a paper to the Astrophysical Journal which utilized a sample of clusters originally selected from the ROSAT All-sky survey at redshifts greater than 0.3. This sample was studied with ASCA to determine temperature and luminosity.

  19. Renormalizing a viscous fluid model for large scale structure formation

    NASA Astrophysics Data System (ADS)

    Führer, Florian; Rigopoulos, Gerasimos

    2016-02-01

    Using the Stochastic Adhesion Model (SAM) as a simple toy model for cosmic structure formation, we study renormalization and the removal of the cutoff dependence from loop integrals in perturbative calculations. SAM shares the same symmetry with the full system of continuity+Euler equations and includes a viscosity term and a stochastic noise term, similar to the effective theories recently put forward to model CDM clustering. We show in this context that if the viscosity and noise terms are treated as perturbative corrections to the standard eulerian perturbation theory, they are necessarily non-local in time. To ensure Galilean Invariance higher order vertices related to the viscosity and the noise must then be added and we explicitly show at one-loop that these terms act as counter terms for vertex diagrams. The Ward Identities ensure that the non-local-in-time theory can be renormalized consistently. Another possibility is to include the viscosity in the linear propagator, resulting in exponential damping at high wavenumber. The resulting local-in-time theory is then renormalizable to one loop, requiring less free parameters for its renormalization.

  20. The influence of large-scale structures on entrainment in a decelerating transient turbulent jet revealed by large eddy simulation

    NASA Astrophysics Data System (ADS)

    Hu, Bing; Musculus, Mark P. B.; Oefelein, Joseph C.

    2012-04-01

    To provide a better understanding of the fluid mechanical mechanisms governing entrainment in decelerating jets, we performed a large eddy simulation (LES) of a transient air jet. The ensemble-averaged LES calculations agree well with the available measurements of centerline velocity, and they reveal a region of increased entrainment that grows as it propagates downstream during deceleration. Within the temporal and spatial domains of the simulation, entrainment during deceleration temporarily increases by roughly a factor of two over that of the quasi-steady jet, and thereafter decays to a level lower than the quasi-steady jet. The LES results also provide large-structure flow details that lend insight into the effects of deceleration on entrainment. The simulations show greater growth and separation of large vortical structures during deceleration. Ambient fluid is engulfed into the gaps between the large-scale structures, causing large-scale indentations in the scalar jet boundary. The changes in the growth and separation of large structures during deceleration are attributed to changes in the production and convection of vorticity. Both the absolute and normalized scalar dissipation rates decrease during deceleration, implying that changes in small-scale mixing during deceleration do not play an important role in the increased entrainment. Hence, the simulations predict that entrainment in combustion devices may be controlled by manipulating the fuel-jet boundary conditions, which affect structures at large scales much more than at small scales.

  1. Method for large-scale fabrication of atomic-scale structures on material surfaces using surface vacancies

    DOEpatents

    Lim, Chong Wee; Ohmori, Kenji; Petrov, Ivan Georgiev; Greene, Joseph E.

    2004-07-13

    A method for forming atomic-scale structures on a surface of a substrate on a large-scale includes creating a predetermined amount of surface vacancies on the surface of the substrate by removing an amount of atoms on the surface of the material corresponding to the predetermined amount of the surface vacancies. Once the surface vacancies have been created, atoms of a desired structure material are deposited on the surface of the substrate to enable the surface vacancies and the atoms of the structure material to interact. The interaction causes the atoms of the structure material to form the atomic-scale structures.

  2. Contributions to the understanding of large-scale coherent structures in developing free turbulent shear flows

    NASA Technical Reports Server (NTRS)

    Liu, J. T. C.

    1988-01-01

    The physical problem of large-scale coherent structures in real, developing free turbulent shear flows are discussed from the point of view of a broader interpretation of the nonlinear aspects of hydrodynamic stability. Variations on the Amsden and Harlow problem are considered, and the role of linear theory in nonlinear problems is addressed. Spatially developing two-dimensional coherent structures and three-dimensional nonlinear effects in large-scale coherent mode interactions are considered.

  3. Contributions to the understanding of large-scale coherent structures in developing free turbulent shear flows

    NASA Astrophysics Data System (ADS)

    Liu, J. T. C.

    The physical problem of large-scale coherent structures in real, developing free turbulent shear flows are discussed from the point of view of a broader interpretation of the nonlinear aspects of hydrodynamic stability. Variations on the Amsden and Harlow problem are considered, and the role of linear theory in nonlinear problems is addressed. Spatially developing two-dimensional coherent structures and three-dimensional nonlinear effects in large-scale coherent mode interactions are considered.

  4. TOPOLOGY OF A LARGE-SCALE STRUCTURE AS A TEST OF MODIFIED GRAVITY

    SciTech Connect

    Wang Xin; Chen Xuelei; Park, Changbom

    2012-03-01

    The genus of the isodensity contours is a robust measure of the topology of a large-scale structure, and it is relatively insensitive to nonlinear gravitational evolution, galaxy bias, and redshift-space distortion. We show that the growth of density fluctuations is scale dependent even in the linear regime in some modified gravity theories, which opens a new possibility of testing the theories observationally. We propose to use the genus of the isodensity contours, an intrinsic measure of the topology of the large-scale structure, as a statistic to be used in such tests. In Einstein's general theory of relativity, density fluctuations grow at the same rate on all scales in the linear regime, and the genus per comoving volume is almost conserved as structures grow homologously, so we expect that the genus-smoothing-scale relation is basically time independent. However, in some modified gravity models where structures grow with different rates on different scales, the genus-smoothing-scale relation should change over time. This can be used to test the gravity models with large-scale structure observations. We study the cases of the f(R) theory, DGP braneworld theory as well as the parameterized post-Friedmann models. We also forecast how the modified gravity models can be constrained with optical/IR or redshifted 21 cm radio surveys in the near future.

  5. Spontaneous Formation of Surface Magnetic Structure from Large-scale Dynamo in Strongly Stratified Convection

    NASA Astrophysics Data System (ADS)

    Masada, Youhei; Sano, Takayoshi

    2016-05-01

    We report the first successful simulation of spontaneous formation of surface magnetic structures from a large-scale dynamo by strongly stratified thermal convection in Cartesian geometry. The large-scale dynamo observed in our strongly stratified model has physical properties similar to those in earlier weakly stratified convective dynamo simulations, indicating that the α 2-type mechanism is responsible for the dynamo. In addition to the large-scale dynamo, we find that large-scale structures of the vertical magnetic field are spontaneously formed in the convection zone (CZ) surface only in cases with a strongly stratified atmosphere. The organization of the vertical magnetic field proceeds in the upper CZ within tens of convective turnover time and band-like bipolar structures recurrently appear in the dynamo-saturated stage. We consider several candidates to be possibly be the origin of the surface magnetic structure formation, and then suggest the existence of an as-yet-unknown mechanism for the self-organization of the large-scale magnetic structure, which should be inherent in the strongly stratified convective atmosphere.

  6. The Large-Scale Structure of Semantic Networks: Statistical Analyses and a Model of Semantic Growth

    ERIC Educational Resources Information Center

    Steyvers, Mark; Tenenbaum, Joshua B.

    2005-01-01

    We present statistical analyses of the large-scale structure of 3 types of semantic networks: word associations, WordNet, and Roget's Thesaurus. We show that they have a small-world structure, characterized by sparse connectivity, short average path lengths between words, and strong local clustering. In addition, the distributions of the number of…

  7. Virtual Testing of Large Composite Structures: A Multiple Length/Time-Scale Framework

    NASA Astrophysics Data System (ADS)

    Gigliotti, Luigi; Pinho, Silvestre T.

    2015-12-01

    This paper illustrates a multiple length/time-scale framework for the virtual testing of large composite structures. Such framework hinges upon a Mesh Superposition Technique (MST) for the coupling between areas of the structure modelled at different length-scales and upon an efficient solid-to-shell numerical homogenization which exploits the internal symmetries of Unit Cells (UCs). Using this framework, it is possible to minimize the areas of the structure modelled at the lowest- (and computationally demanding) scales and the computational cost required to calculate the homogenised to be used in the higher-scales subdomains of multiscale FE models, as well as to simulate the mechanical response of different parts of the structure using different solvers, depending on where they are expected to provide the most computationally efficient solution. The relevance and key-aspects of the multiple length/time-scale framework are demonstrated through the analysis of a real-sized aeronautical composite component.

  8. Void statistics, scaling, and the origins of large-scale structure

    NASA Technical Reports Server (NTRS)

    Fry, J. N.; Giovanelli, Riccardo; Haynes, Martha P.; Melott, Adrian L.; Scherrer, Robert J.

    1989-01-01

    The probability that a volume of the universe of given size and shape spaced at random will be void of galaxies is used here to study various models of the origin of cosmological structures. Numerical simulations are conducted on hot-particle and cold-particle-modulated inflationary models with and without biasing, on isothermal or initially Poisson models, and on models where structure is seeded by loops of cosmic string. For the Pisces-Perseus redshift compilation of Giovanelli and Haynes (1985), it is found that hierarchical scaling is obeyed for subsamples constructed with different limiting magnitudes and subsamples taken at random. This result confirms that the hierarchical ansatz holds valid to high order and supports the idea that structure in the observed universe evolves by a regular process from an almost Gaussian primordial state. Neutrino models without biasing show the effect of a strong feature in the initial power spectrum. Cosmic string models do not agree well with the galaxy data.

  9. Small-Scale Screening to Large-Scale Over-Expression of Human Membrane Proteins for Structural Studies.

    PubMed

    Chaudhary, Sarika; Saha, Sukanya; Thamminana, Sobrahani; Stroud, Robert M

    2016-01-01

    Membrane protein structural studies are frequently hampered by poor expression. The low natural abundance of these proteins implies a need for utilizing different heterologous expression systems. E. coli and yeast are commonly used expression systems due to rapid cell growth at high cell density, economical production, and ease of manipulation. Here we report a simplified, systematically developed robust strategy from small-scale screening to large-scale over-expression of human integral membrane proteins in the mammalian expression system for structural studies. This methodology streamlines small-scale screening of several different constructs utilizing fluorescence size-exclusion chromatography (FSEC) towards optimization of buffer, additives, and detergents for achieving stability and homogeneity. This is followed by the generation of stable clonal cell lines expressing desired constructs, and lastly large-scale expression for crystallization. These techniques are designed to rapidly advance the structural studies of eukaryotic integral membrane proteins including that of human membrane proteins. PMID:27485338

  10. Formation of large-scale structure from cosmic-string loops and cold dark matter

    NASA Technical Reports Server (NTRS)

    Melott, Adrian L.; Scherrer, Robert J.

    1987-01-01

    Some results from a numerical simulation of the formation of large-scale structure from cosmic-string loops are presented. It is found that even though G x mu is required to be lower than 2 x 10 to the -6th (where mu is the mass per unit length of the string) to give a low enough autocorrelation amplitude, there is excessive power on smaller scales, so that galaxies would be more dense than observed. The large-scale structure does not include a filamentary or connected appearance and shares with more conventional models based on Gaussian perturbations the lack of cluster-cluster correlation at the mean cluster separation scale as well as excessively small bulk velocities at these scales.

  11. A Linear Scaling Three Dimensional Fragment Method for Large ScaleElectronic Structure Calculations

    SciTech Connect

    Wang, Lin-Wang; Zhao, Zhengji; Meza, Juan

    2007-07-26

    We present a novel linear scaling ab initio total energyelectronic structure calculation method, which is simple to implement,easily to parallelize, and produces essentially thesame results as thedirect ab initio method, while it could be thousands of times faster.Using this method, we have studied the dipole moments of CdSe quantumdots, and found both significant bulk and surface contributions. The bulkdipole contribution cannot simply be estimated from the bulk spontaneouspolarization value by a proportional volume factor. Instead it has ageometry dependent screening effect. The dipole moment also produces astrong internal electric field which induces a strong electron holeseparation.

  12. On the large scale structure of X-ray background sources

    NASA Technical Reports Server (NTRS)

    Bi, H. G.; Meszaros, A.; Meszaros, P.

    1991-01-01

    The large scale clustering of the sources responsible for the X-ray background is discussed, under the assumption of a discrete origin. The formalism necessary for calculating the X-ray spatial fluctuations in the most general case where the source density contrast in structures varies with redshift is developed. A comparison of this with observational limits is useful for obtaining information concerning various galaxy formation scenarios. The calculations presented show that a varying density contrast has a small impact on the expected X-ray fluctuations. This strengthens and extends previous conclusions concerning the size and comoving density of large scale structures at redshifts 0.5 between 4.0.

  13. The three-point function as a probe of models for large-scale structure

    NASA Technical Reports Server (NTRS)

    Frieman, Joshua A.; Gaztanaga, Enrique

    1993-01-01

    The consequences of models of structure formation for higher-order (n-point) galaxy correlation functions in the mildly non-linear regime are analyzed. Several variations of the standard Omega = 1 cold dark matter model with scale-invariant primordial perturbations were recently introduced to obtain more power on large scales, R(sub p) is approximately 20 h(sup -1) Mpc, e.g., low-matter-density (non-zero cosmological constant) models, 'tilted' primordial spectra, and scenarios with a mixture of cold and hot dark matter. They also include models with an effective scale-dependent bias, such as the cooperative galaxy formation scenario of Bower, etal. It is shown that higher-order (n-point) galaxy correlation functions can provide a useful test of such models and can discriminate between models with true large-scale power in the density field and those where the galaxy power arises from scale-dependent bias: a bias with rapid scale-dependence leads to a dramatic decrease of the hierarchical amplitudes Q(sub J) at large scales, r is approximately greater than R(sub p). Current observational constraints on the three-point amplitudes Q(sub 3) and S(sub 3) can place limits on the bias parameter(s) and appear to disfavor, but not yet rule out, the hypothesis that scale-dependent bias is responsible for the extra power observed on large scales.

  14. The three-point function as a probe of models for large-scale structure

    SciTech Connect

    Frieman, J.A.; Gaztanaga, E.

    1993-06-19

    The authors analyze the consequences of models of structure formation for higher-order (n-point) galaxy correlation functions in the mildly non-linear regime. Several variations of the standard {Omega} = 1 cold dark matter model with scale-invariant primordial perturbations have recently been introduced to obtain more power on large scales, R{sub p} {approximately}20 h{sup {minus}1} Mpc, e.g., low-matter-density (non-zero cosmological constant) models, {open_quote}tilted{close_quote} primordial spectra, and scenarios with a mixture of cold and hot dark matter. They also include models with an effective scale-dependent bias, such as the cooperative galaxy formation scenario of Bower, et al. The authors show that higher-order (n-point) galaxy correlation functions can provide a useful test of such models and can discriminate between models with true large-scale power in the density field and those where the galaxy power arises from scale-dependent bias: a bias with rapid scale-dependence leads to a dramatic decrease of the hierarchical amplitudes Q{sub J} at large scales, r {approx_gt} R{sub p}. Current observational constraints on the three-point amplitudes Q{sub 3} and S{sub 3} can place limits on the bias parameter(s) and appear to disfavor, but not yet rule out, the hypothesis that scale-dependent bias is responsible for the extra power observed on large scales.

  15. Quasars as a Tracer of Large-scale Structures in the Distant Universe

    NASA Astrophysics Data System (ADS)

    Song, Hyunmi; Park, Changbom; Lietzen, Heidi; Einasto, Maret

    2016-08-01

    We study the dependence of the number density and properties of quasars on the background galaxy density using the currently largest spectroscopic data sets of quasars and galaxies. We construct a galaxy number density field smoothed over the variable smoothing scale of between approximately 10 and 20 h -1 Mpc over the redshift range 0.46 < z < 0.59 using the Sloan Digital Sky Survey (SDSS) Data Release 12 (DR12) Constant MASS galaxies. The quasar sample is prepared from the SDSS-I/II DR7. We examine the correlation of incidence of quasars with the large-scale background density and the dependence of quasar properties such as bolometric luminosity, black hole mass, and Eddington ratio on the large-scale density. We find a monotonic correlation between the quasar number density and large-scale galaxy number density, which is fitted well with a power-law relation, {n}Q\\propto {ρ }G0.618. We detect weak dependences of quasar properties on the large-scale density such as a positive correlation between black hole mass and density, and a negative correlation between luminosity and density. We discuss the possibility of using quasars as a tracer of large-scale structures at high redshifts, which may be useful for studies of the growth of structures in the high-redshift universe.

  16. On the large-scale structures formed by wakes of open cosmic strings

    NASA Technical Reports Server (NTRS)

    Hara, Tetsuya; Morioka, Shoji; Miyoshi, Shigeru

    1990-01-01

    Large-scale structures of the universe have been variously described as sheetlike, filamentary, cellular, bubbles or spongelike. Recently cosmic strings became one of viable candidates for a galaxy formation scenario, and some of the large-scale structures seem to be simply explained by the open cosmic strings. According to this scenario, sheets are wakes which are traces of moving open cosmic strings where dark matter and baryonic matter have accumulated. Filaments are intersections of such wakes and high density regions are places where three wakes intersect almost orthogonally. The wakes formed at t sub eq become the largest surface density among all wakes, where t sub eq is the epoch when matter density equals to radiation density. If we assume that there is one open cosmic string per each horizon, then it can be explained that the typical distances among wakes, filaments and clusters are also approx. 10(exp 2) Mpc. This model does not exclude a much more large scale structure. Open cosmic string may move even now and accumulate cold dark matter after its traces. However, the surface density is much smaller than the ones formed at t sub eq. From this model, it is expected that the typical high density region will have extended features such as six filaments and three sheets and be surrounded by eight empty regions (voids). Here, the authors are mainly concerned with such structures and have made numerical simulations for the formation of such large scale structures.

  17. Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.

    PubMed

    Dai, Liang; Zhou, Yaoqi

    2011-05-01

    Worldwide structural genomics projects are increasing structure coverage of sequence space but have not significantly expanded the protein structure space itself (i.e., number of unique structural folds) since 2007. Discovering new structural folds experimentally by directed evolution and random recombination of secondary-structure blocks is also proved rarely successful. Meanwhile, previous computational efforts for large-scale mapping of protein structure space are limited to simple model proteins and led to an inconclusive answer on the completeness of the existing observed protein structure space. Here, we build novel protein structures by extending naturally occurring circular (single-loop) permutation to multiple loop permutations (MLPs). These structures are clustered by structural similarity measure called TM-score. The computational technique allows us to produce different structural clusters on the same naturally occurring, packed, stable core but with alternatively connected secondary-structure segments. A large-scale MLP of 2936 domains from structural classification of protein domains reproduces those existing structural clusters (63%) mostly as hubs for many nonredundant sequences and illustrates newly discovered novel clusters as islands adopted by a few sequences only. Results further show that there exist a significant number of novel potentially stable clusters for medium-size or large-size single-domain proteins, in particular, >100 amino acid residues, that are either not yet adopted by nature or adopted only by a few sequences. This study suggests that MLP provides a simple yet highly effective tool for engineering and design of novel protein structures (including naturally knotted proteins). The implication of recovering new-fold targets from critical assessment of structure prediction techniques (CASP) by MLP on template-based structure prediction is also discussed. Our MLP structures are available for download at the publication page of the

  18. Implications of a class of grand unified theories for large scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Shafi, Q.; Stecker, F. W.

    1983-01-01

    A class of grand unified theories in which cosmologicaly significant axion and neutrino energy densities arise naturally is discussed. To obtain large scale structure three scenarios are considered: (1) an inflationary scenario; (2) inflation followed by string production; and (3) a non-inflationary scenario with density fluctuations caused solely by strings. Inflation may be compatible with the recent observational indications that mega 1 on the scale of superclusters, particularly if strings are present.

  19. Structural subgrid-scale modeling for large-eddy simulation: A review

    NASA Astrophysics Data System (ADS)

    Lu, Hao; Rutland, Christopher J.

    2016-08-01

    Accurately modeling nonlinear interactions in turbulence is one of the key challenges for large-eddy simulation (LES) of turbulence. In this article, we review recent studies on structural subgrid scale modeling, focusing on evaluating how well these models predict the effects of small scales. The article discusses a priori and a posteriori test results. Other nonlinear models are briefly discussed, and future prospects are noted.

  20. Simultaneous effect of modified gravity and primordial non-Gaussianity in large scale structure observations

    SciTech Connect

    Mirzatuny, Nareg; Khosravi, Shahram; Baghram, Shant; Moshafi, Hossein E-mail: khosravi@mail.ipm.ir E-mail: hosseinmoshafi@iasbs.ac.ir

    2014-01-01

    In this work we study the simultaneous effect of primordial non-Gaussianity and the modification of the gravity in f(R) framework on large scale structure observations. We show that non-Gaussianity and modified gravity introduce a scale dependent bias and growth rate functions. The deviation from ΛCDM in the case of primordial non-Gaussian models is in large scales, while the growth rate deviates from ΛCDM in small scales for modified gravity theories. We show that the redshift space distortion can be used to distinguish positive and negative f{sub NL} in standard background, while in f(R) theories they are not easily distinguishable. The galaxy power spectrum is generally enhanced in presence of non-Gaussianity and modified gravity. We also obtain the scale dependence of this enhancement. Finally we define galaxy growth rate and galaxy growth rate bias as new observational parameters to constrain cosmology.

  1. Phase transitions as the origin of large scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Turok, Neil

    1989-01-01

    A review of the formation of large scale structure through gravitational growth of primordial perturbations is given. This is followed by a discussion of how symmetry breaking phase transitions in the early universe might have produced the required perturbations, in particular through the formation and evolution of a network of cosmic strings.

  2. Factor Structure and Correlates of the Dissociative Experiences Scale in a Large Offender Sample

    ERIC Educational Resources Information Center

    Ruiz, Mark A.; Poythress, Norman G.; Lilienfeld, Scott O.; Douglas, Kevin S.

    2008-01-01

    The authors examined the psychometric properties, factor structure, and construct validity of the Dissociative Experiences Scale (DES) in a large offender sample (N = 1,515). Although the DES is widely used with community and clinical samples, minimal work has examined offender samples. Participants were administered self-report and interview…

  3. Formation of large-scale structure from cosmic strings and massive neutrinos

    NASA Technical Reports Server (NTRS)

    Scherrer, Robert J.; Melott, Adrian L.; Bertschinger, Edmund

    1989-01-01

    Numerical simulations of large-scale structure formation from cosmic strings and massive neutrinos are described. The linear power spectrum in this model resembles the cold-dark-matter power spectrum. Galaxy formation begins early, and the final distribution consists of isolated density peaks embedded in a smooth background, leading to a natural bias in the distribution of luminous matter. The distribution of clustered matter has a filamentary appearance with large voids.

  4. Structure Discovery in Large Semantic Graphs Using Extant Ontological Scaling and Descriptive Statistics

    SciTech Connect

    al-Saffar, Sinan; Joslyn, Cliff A.; Chappell, Alan R.

    2011-07-18

    As semantic datasets grow to be very large and divergent, there is a need to identify and exploit their inherent semantic structure for discovery and optimization. Towards that end, we present here a novel methodology to identify the semantic structures inherent in an arbitrary semantic graph dataset. We first present the concept of an extant ontology as a statistical description of the semantic relations present amongst the typed entities modeled in the graph. This serves as a model of the underlying semantic structure to aid in discovery and visualization. We then describe a method of ontological scaling in which the ontology is employed as a hierarchical scaling filter to infer different resolution levels at which the graph structures are to be viewed or analyzed. We illustrate these methods on three large and publicly available semantic datasets containing more than one billion edges each. Keywords-Semantic Web; Visualization; Ontology; Multi-resolution Data Mining;

  5. On the renormalization of the effective field theory of large scale structures

    SciTech Connect

    Pajer, Enrico; Zaldarriaga, Matias E-mail: matiasz@ias.edu

    2013-08-01

    Standard perturbation theory (SPT) for large-scale matter inhomogeneities is unsatisfactory for at least three reasons: there is no clear expansion parameter since the density contrast is not small on all scales; it does not fully account for deviations at large scales from a perfect pressureless fluid induced by short-scale non-linearities; for generic initial conditions, loop corrections are UV-divergent, making predictions cutoff dependent and hence unphysical. The Effective Field Theory of Large Scale Structures successfully addresses all three issues. Here we focus on the third one and show explicitly that the terms induced by integrating out short scales, neglected in SPT, have exactly the right scale dependence to cancel all UV-divergences at one loop, and this should hold at all loops. A particularly clear example is an Einstein deSitter universe with no-scale initial conditions P{sub in} ∼ k{sup n}. After renormalizing the theory, we use self-similarity to derive a very simple result for the final power spectrum for any n, excluding two-loop corrections and higher. We show how the relative importance of different corrections depends on n. For n ∼ −1.5, relevant for our universe, pressure and dissipative corrections are more important than the two-loop corrections.

  6. Fingerprints of anomalous primordial Universe on the abundance of large scale structures

    SciTech Connect

    Baghram, Shant; Abolhasani, Ali Akbar; Firouzjahi, Hassan; Namjoo, Mohammad Hossein E-mail: abolhasani@ipm.ir E-mail: MohammadHossein.Namjoo@utdallas.edu

    2014-12-01

    We study the predictions of anomalous inflationary models on the abundance of structures in large scale structure observations. The anomalous features encoded in primordial curvature perturbation power spectrum are (a): localized feature in momentum space, (b): hemispherical asymmetry and (c): statistical anisotropies. We present a model-independent expression relating the number density of structures to the changes in the matter density variance. Models with localized feature can alleviate the tension between observations and numerical simulations of cold dark matter structures on galactic scales as a possible solution to the missing satellite problem. In models with hemispherical asymmetry we show that the abundance of structures becomes asymmetric depending on the direction of observation to sky. In addition, we study the effects of scale-dependent dipole amplitude on the abundance of structures. Using the quasars data and adopting the power-law scaling k{sup n{sub A}-1} for the amplitude of dipole we find the upper bound n{sub A} < 0.6 for the spectral index of the dipole asymmetry. In all cases there is a critical mass scale M{sub c} in which for M M{sub c}) the enhancement in variance induced from anomalous feature decreases (increases) the abundance of dark matter structures in Universe.

  7. Weak lensing of large scale structure in the presence of screening

    SciTech Connect

    Tessore, Nicolas; Metcalf, R. Benton; Giocoli, Carlo E-mail: hans.winther@astro.ox.ac.uk E-mail: pedro.ferreira@physics.ox.ac.uk

    2015-10-01

    A number of alternatives to general relativity exhibit gravitational screening in the non-linear regime of structure formation. We describe a set of algorithms that can produce weak lensing maps of large scale structure in such theories and can be used to generate mock surveys for cosmological analysis. By analysing a few basic statistics we indicate how these alternatives can be distinguished from general relativity with future weak lensing surveys.

  8. GPCR Network: a large-scale collaboration on GPCR structure and function

    PubMed Central

    Stevens, Raymond C.; Cherezov, Vadim; Katritch, Vsevolod; Abagyan, Ruben; Kuhn, Peter; Rosen, Hugh; Wüthrich, Kurt

    2013-01-01

    Preface Collaboration is a cornerstone of many successful scientific research endeavors, which distributes risks and rewards to encourage progress in challenging areas. A striking illustration is the large-scale project that seeks to achieve a robust fundamental understanding of structure and function in the human G protein-coupled receptor superfamily. The GPCR Network was created to achieve this goal based on an active outreach program addressing an interdisciplinary community of scientists interested in GPCR structure, chemistry and biology. PMID:23237917

  9. Large-Scale Computations Leading to a First-Principles Approach to Nuclear Structure

    SciTech Connect

    Ormand, W E; Navratil, P

    2003-08-18

    We report on large-scale applications of the ab initio, no-core shell model with the primary goal of achieving an accurate description of nuclear structure from the fundamental inter-nucleon interactions. In particular, we show that realistic two-nucleon interactions are inadequate to describe the low-lying structure of {sup 10}B, and that realistic three-nucleon interactions are essential.

  10. Results from large scale ultimate strength tests of K-braced jacket frame structures

    SciTech Connect

    Bolt, H.M.

    1995-12-01

    Phase 2 of the JIP Frames Project included four large scale collapse tests of K-braced frames in which both gap and overlap K joints were the critical components. The results are presented in this paper. The local failure modes differed from typical isolated component tests, yet were representative of structural damage observed following Hurricane Andrew. The frame test results therefore provide important insight to the ultimate response of offshore jacket structures.

  11. Light domain walls, massive neutrinos and the large scale structure of the Universe

    NASA Technical Reports Server (NTRS)

    Massarotti, Alessandro

    1991-01-01

    Domain walls generated through a cosmological phase transition are considered, which interact nongravitationally with light neutrinos. At a redshift z greater than or equal to 10(exp 4), the network grows rapidly and is virtually decoupled from the matter. As the friction with the matter becomes dominant, a comoving network scale close to that of the comoving horizon scale at z of approximately 10(exp 4) gets frozen. During the later phases, the walls produce matter wakes of a thickness d of approximately 10h(exp -1)Mpc, that may become seeds for the formation of the large scale structure observed in the Universe.

  12. Large-scale impacts of herbivores on the structural diversity of African savannas.

    PubMed

    Asner, Gregory P; Levick, Shaun R; Kennedy-Bowdoin, Ty; Knapp, David E; Emerson, Ruth; Jacobson, James; Colgan, Matthew S; Martin, Roberta E

    2009-03-24

    African savannas are undergoing management intensification, and decision makers are increasingly challenged to balance the needs of large herbivore populations with the maintenance of vegetation and ecosystem diversity. Ensuring the sustainability of Africa's natural protected areas requires information on the efficacy of management decisions at large spatial scales, but often neither experimental treatments nor large-scale responses are available for analysis. Using a new airborne remote sensing system, we mapped the three-dimensional (3-D) structure of vegetation at a spatial resolution of 56 cm throughout 1640 ha of savanna after 6-, 22-, 35-, and 41-year exclusions of herbivores, as well as in unprotected areas, across Kruger National Park in South Africa. Areas in which herbivores were excluded over the short term (6 years) contained 38%-80% less bare ground compared with those that were exposed to mammalian herbivory. In the longer-term (> 22 years), the 3-D structure of woody vegetation differed significantly between protected and accessible landscapes, with up to 11-fold greater woody canopy cover in the areas without herbivores. Our maps revealed 2 scales of ecosystem response to herbivore consumption, one broadly mediated by geologic substrate and the other mediated by hillslope-scale variation in soil nutrient availability and moisture conditions. Our results are the first to quantitatively illustrate the extent to which herbivores can affect the 3-D structural diversity of vegetation across large savanna landscapes.

  13. Measuring the topology of large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Gott, J. Richard, III

    1988-01-01

    An algorithm for quantitatively measuring the topology of large-scale structure has now been applied to a large number of observational data sets. The present paper summarizes and provides an overview of some of these observational results. On scales significantly larger than the correlation length, larger than about 1200 km/s, the cluster and galaxy data are fully consistent with a sponge-like random phase topology. At a smoothing length of about 600 km/s, however, the observed genus curves show a small shift in the direction of a meatball topology. Cold dark matter (CDM) models show similar shifts at these scales but not generally as large as those seen in the data. Bubble models, with voids completely surrounded on all sides by wall of galaxies, show shifts in the opposite direction. The CDM model is overall the most successful in explaining the data.

  14. Non-Gaussianity and large-scale structure in a two-field inflationary model

    SciTech Connect

    Tseliakhovich, Dmitriy; Hirata, Christopher

    2010-08-15

    Single-field inflationary models predict nearly Gaussian initial conditions, and hence a detection of non-Gaussianity would be a signature of the more complex inflationary scenarios. In this paper we study the effect on the cosmic microwave background and on large-scale structure from primordial non-Gaussianity in a two-field inflationary model in which both the inflaton and curvaton contribute to the density perturbations. We show that in addition to the previously described enhancement of the galaxy bias on large scales, this setup results in large-scale stochasticity. We provide joint constraints on the local non-Gaussianity parameter f-tilde{sub NL} and the ratio {xi} of the amplitude of primordial perturbations due to the inflaton and curvaton using WMAP and Sloan Digital Sky Survey data.

  15. The IR-resummed Effective Field Theory of Large Scale Structures

    SciTech Connect

    Senatore, Leonardo; Zaldarriaga, Matias E-mail: matiasz@ias.edu

    2015-02-01

    We present a new method to resum the effect of large scale motions in the Effective Field Theory of Large Scale Structures. Because the linear power spectrum in ΛCDM is not scale free the effects of the large scale flows are enhanced. Although previous EFT calculations of the equal-time density power spectrum at one and two loops showed a remarkable agreement with numerical results, they also showed a 2% residual which appeared related to the BAO oscillations. We show that this was indeed the case, explain the physical origin and show how a Lagrangian based calculation removes this differences. We propose a simple method to upgrade existing Eulerian calculations to effectively make them Lagrangian and compare the new results with existing fits to numerical simulations. Our new two-loop results agrees with numerical results up to k∼ 0.6 h Mpc{sup −1} to within 1% with no oscillatory residuals. We also compute power spectra involving momentum which is significantly more affected by the large scale flows. We show how keeping track of these velocities significantly enhances the UV reach of the momentum power spectrum in addition to removing the BAO related residuals. We compute predictions for the real space correlation function around the BAO scale and investigate its sensitivity to the EFT parameters and the details of the resummation technique.

  16. Thick strings, the liquid crystal blue phase, and cosmological large-scale structure

    NASA Technical Reports Server (NTRS)

    Luo, Xiaochun; Schramm, David N.

    1992-01-01

    A phenomenological model based on the liquid crystal blue phase is proposed as a model for a late-time cosmological phase transition. Topological defects, in particular thick strings and/or domain walls, are presented as seeds for structure formation. It is shown that the observed large-scale structure, including quasi-periodic wall structure, can be well fitted in the model without violating the microwave background isotropy bound or the limits from induced gravitational waves and the millisecond pulsar timing. Furthermore, such late-time transitions can produce objects such as quasars at high redshifts. The model appears to work with either cold or hot dark matter.

  17. Structure and evolution of the large scale solar and heliospheric magnetic fields. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Hoeksema, J. T.

    1984-01-01

    Structure and evolution of large scale photospheric and coronal magnetic fields in the interval 1976-1983 were studied using observations from the Stanford Solar Observatory and a potential field model. The solar wind in the heliosphere is organized into large regions in which the magnetic field has a componenet either toward or away from the sun. The model predicts the location of the current sheet separating these regions. Near solar minimum, in 1976, the current sheet lay within a few degrees of the solar equator having two extensions north and south of the equator. Soon after minimum the latitudinal extent began to increase. The sheet reached to at least 50 deg from 1978 through 1983. The complex structure near maximum occasionally included multiple current sheets. Large scale structures persist for up to two years during the entire interval. To minimize errors in determining the structure of the heliospheric field particular attention was paid to decreasing the distorting effects of rapid field evolution, finding the optimum source surface radius, determining the correction to the sun's polar field, and handling missing data. The predicted structure agrees with direct interplanetary field measurements taken near the ecliptic and with coronameter and interplanetary scintillation measurements which infer the three dimensional interplanetary magnetic structure. During most of the solar cycle the heliospheric field cannot be adequately described as a dipole.

  18. The Price of Precision: Large-Scale Mapping of Forest Structure and Biomass Using Airborne Lidar

    NASA Astrophysics Data System (ADS)

    Dubayah, R.

    2015-12-01

    Lidar remote sensing provides one of the best means for acquiring detailed information on forest structure. However, its application over large areas has been limited largely because of its expense. Nonetheless, extant data exist over many states in the U.S., funded largely by state and federal consortia and mainly for infrastructure, emergency response, flood plain and coastal mapping. These lidar data are almost always acquired in leaf-off seasons, and until recently, usually with low point count densities. Even with these limitations, they provide unprecedented wall-to-wall mappings that enable development of appropriate methodologies for large-scale deployment of lidar. In this talk we summarize our research and lessons learned in deriving forest structure over regional areas as part of NASA's Carbon Monitoring System (CMS). We focus on two areas: the entire state of Maryland and Sonoma County, California. The Maryland effort used low density, leaf-off data acquired by each county in varying epochs, while the on-going Sonoma work employs state-of-the-art, high density, wall-to-wall, leaf-on lidar data. In each area we combine these lidar coverages with high-resolution multispectral imagery from the National Agricultural Imagery Program (NAIP) and in situ plot data to produce maps of canopy height, tree cover and biomass, and compare our results against FIA plot data and national biomass maps. Our work demonstrates that large-scale mapping of forest structure at high spatial resolution is achievable but products may be complex to produce and validate over large areas. Furthermore, fundamental issues involving statistical approaches, plot types and sizes, geolocation, modeling scales, allometry, and even the definitions of "forest" and "non-forest" must be approached carefully. Ultimately, determining the "price of precision", that is, does the value of wall-to-wall forest structure data justify their expense, should consider not only carbon market applications

  19. Turbulence and magnetic fields in the large-scale structure of the universe.

    PubMed

    Ryu, Dongsu; Kang, Hyesung; Cho, Jungyeon; Das, Santabrata

    2008-05-16

    The nature and origin of turbulence and magnetic fields in the intergalactic space are important problems that are yet to be understood. We propose a scenario in which turbulent-flow motions are induced via the cascade of the vorticity generated at cosmological shocks during the formation of the large-scale structure. The turbulence in turn amplifies weak seed magnetic fields of any origin. Supercomputer simulations show that the turbulence is subsonic inside clusters and groups of galaxies, whereas it is transonic or mildly supersonic in filaments. Based on a turbulence dynamo model, we then estimated that the average magnetic field strength would be a few microgauss (microG) inside clusters and groups, approximately 0.1 muG around clusters and groups, and approximately 10 nanogauss in filaments. Our model presents a physical mechanism that transfers the gravitational energy to the turbulence and magnetic field energies in the large-scale structure of the universe.

  20. Scalar-fluid theories: cosmological perturbations and large-scale structure

    SciTech Connect

    Koivisto, Tomi S.; Saridakis, Emmanuel N.; Tamanini, Nicola E-mail: Emmanuel_Saridakis@baylor.edu

    2015-09-01

    Recently a new Lagrangian framework was introduced to describe interactions between scalar fields and relativistic perfect fluids. This allows two consistent generalizations of coupled quintessence models: non-vanishing pressures and a new type of derivative interaction. The implications of these to the formation of cosmological large-scale structure are uncovered here at the linear order. The full perturbation equations in the two cases are derived in a unified formalism and their Newtonian, quasi-static limit is studied analytically. Requiring the absence of an effective sound speed term in the coupled dark matter fluid restricts the Lagrangian to be a linear function of the matter number density. This leaves new potentially viable classes of both algebraically and derivatively interacting models wherein the coupling may impact the background expansion dynamics and imprint new signatures into the large-scale structure.

  1. Music in the moment? Revisiting the effect of large scale structures.

    PubMed

    Lalitte, P; Bigand, E

    2006-12-01

    The psychological relevance of large-scale musical structures has been a matter of debate in the music community. This issue was investigated with a method that allows assessing listeners' detection of musical incoherencies in normal and scrambled versions of popular and contemporary music pieces. Musical excerpts were segmented into 28 or 29 chunks. In the scrambled version, the temporal order of these chunks was altered with the constraint that the transitions between two chunks never created local acoustical and musical disruptions. Participants were required (1) to detect on-line incoherent linking of chunks, (2) to rate aesthetic quality of pieces, and (3) to evaluate their overall coherence. The findings indicate a moderate sensitivity to large-scale musical structures for popular and contemporary music in both musically trained and untrained listeners. These data are discussed in light of current models of music cognition.

  2. Computation of Large-Scale Structure Jet Noise Sources With Weak Nonlinear Effects Using Linear Euler

    NASA Technical Reports Server (NTRS)

    Dahl, Milo D.; Hixon, Ray; Mankbadi, Reda R.

    2003-01-01

    An approximate technique is presented for the prediction of the large-scale turbulent structure sound source in a supersonic jet. A linearized Euler equations code is used to solve for the flow disturbances within and near a jet with a given mean flow. Assuming a normal mode composition for the wave-like disturbances, the linear radial profiles are used in an integration of the Navier-Stokes equations. This results in a set of ordinary differential equations representing the weakly nonlinear self-interactions of the modes along with their interaction with the mean flow. Solutions are then used to correct the amplitude of the disturbances that represent the source of large-scale turbulent structure sound in the jet.

  3. Resurrecting hot dark matter - Large-scale structure from cosmic strings and massive neutrinos

    NASA Technical Reports Server (NTRS)

    Scherrer, Robert J.

    1988-01-01

    These are the results of a numerical simulation of the formation of large-scale structure from cosmic-string loops in a universe dominated by massive neutrinos (hot dark matter). This model has several desirable features. The final matter distribution contains isolated density peaks embedded in a smooth background, producing a natural bias in the distribution of luminous matter. Because baryons can accrete onto the cosmic strings before the neutrinos, the galaxies will have baryon cores and dark neutrino halos. Galaxy formation in this model begins much earlier than in random-phase models. On large scales the distribution of clustered matter visually resembles the CfA survey, with large voids and filaments.

  4. Gamma-ray bursts as a probe of large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Lamb, D. Q.; Quashnock, Jean M.

    1993-01-01

    If gamma-ray bursts are cosmological in origin, the sources of the bursts are expected to trace the large-scale structure of luminous matter in the universe. We show that, if this is so and if the Burst and Transient Source Experiment yields the locations of approximately greater than 3000 gamma-ray bursts, it may be possible to use them to probe the structure of luminous matter on the largest scales known, consistent with recent determinations from pencil beam surveys and studies of superclusters. A positive result would provide compelling evidence that most gamma-ray bursts are cosmological in origin and would allow comparison between the distributions of luminous matter and dark matter on large scales. Conversely, a negative result might cast doubt on the cosmological origin of the bursts, provide evidence that the clustering of burst sources on large scales is less than that expected from pencil beam surveys and studies of superclusters, or indicate that gamma-ray bursts have some more exotic origin.

  5. Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure

    PubMed Central

    Therizols, Pierre

    2016-01-01

    Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple biophysical model where interphase chromosomes are described in terms of the folding of chromatin sequences composed of alternating blocks of fibers with different thicknesses and flexibilities, and we use it to study the influence of sequence disorder on chromosome behaviors in space and time. By employing extensive computer simulations, we thus demonstrate that chromosomes undergo noticeable conformational changes only on length-scales smaller than 105 basepairs and time-scales shorter than a few seconds, and we suggest there might exist effective upper bounds to the detection of chromosome reorganization in eukaryotes. We prove the relevance of our framework by modeling recent experimental FISH data on murine chromosomes. PMID:27295501

  6. Testing the Big Bang: Light elements, neutrinos, dark matter and large-scale structure

    NASA Technical Reports Server (NTRS)

    Schramm, David N.

    1991-01-01

    Several experimental and observational tests of the standard cosmological model are examined. In particular, a detailed discussion is presented regarding: (1) nucleosynthesis, the light element abundances, and neutrino counting; (2) the dark matter problems; and (3) the formation of galaxies and large-scale structure. Comments are made on the possible implications of the recent solar neutrino experimental results for cosmology. An appendix briefly discusses the 17 keV thing and the cosmological and astrophysical constraints on it.

  7. Characterising large-scale structure with the REFLEX II cluster survey

    NASA Astrophysics Data System (ADS)

    Chon, Gayoung

    2016-10-01

    We study the large-scale structure with superclusters from the REFLEX X-ray cluster survey together with cosmological N-body simulations. It is important to construct superclusters with criteria such that they are homogeneous in their properties. We lay out our theoretical concept considering future evolution of superclusters in their definition, and show that the X-ray luminosity and halo mass functions of clusters in superclusters are found to be top-heavy, different from those of clusters in the field. We also show a promising aspect of using superclusters to study the local cluster bias and mass scaling relation with simulations.

  8. Coherent large-scale structures in high Reynolds number supersonic jets

    NASA Technical Reports Server (NTRS)

    Lepicovsky, J.; Ahuja, K. K.; Brown, W. H.; Burrin, R. H.

    1985-01-01

    The flow structure of a 50.8 mm (2 in) diameter jet operated at a full expanded Mach number of 1.37, with Reynolds numbers in the range 1.7 to 2.35 million, was examined for the first 20 jet diameters. To facilitate the study of the large scale structure, and determine any coherence, a discrete tone acoustic excitation method was used. Phase locked flow visualization as well as laser velocimeter quantitative measurements were made. The main conclusions derived from this study are: (1) large scale coherent like turbulence structures do exist in large Reynolds number supersonic jets, and they prevail even beyond the potential core; (2) the most preferential Strouhal number for these structures is in the vicinity of 0.4; and (3) quantitatively, the peak amplitudes of these structures are rather low, and are about 1% of the jet exit velocity. Finally, since a number of unique problems related to LV measurements in supersonic jets were encountered, a summary of these problems and lessons learned therefrom are also reported.

  9. Developing eThread Pipeline Using SAGA-Pilot Abstraction for Large-Scale Structural Bioinformatics

    PubMed Central

    Ragothaman, Anjani; Feinstein, Wei; Jha, Shantenu; Kim, Joohyun

    2014-01-01

    While most of computational annotation approaches are sequence-based, threading methods are becoming increasingly attractive because of predicted structural information that could uncover the underlying function. However, threading tools are generally compute-intensive and the number of protein sequences from even small genomes such as prokaryotes is large typically containing many thousands, prohibiting their application as a genome-wide structural systems biology tool. To leverage its utility, we have developed a pipeline for eThread—a meta-threading protein structure modeling tool, that can use computational resources efficiently and effectively. We employ a pilot-based approach that supports seamless data and task-level parallelism and manages large variation in workload and computational requirements. Our scalable pipeline is deployed on Amazon EC2 and can efficiently select resources based upon task requirements. We present runtime analysis to characterize computational complexity of eThread and EC2 infrastructure. Based on results, we suggest a pathway to an optimized solution with respect to metrics such as time-to-solution or cost-to-solution. Our eThread pipeline can scale to support a large number of sequences and is expected to be a viable solution for genome-scale structural bioinformatics and structure-based annotation, particularly, amenable for small genomes such as prokaryotes. The developed pipeline is easily extensible to other types of distributed cyberinfrastructure. PMID:24995285

  10. Large-Scale Flow Structure in Turbulent Nonpremixed Flames under Normal- And Low-Gravity Conditions

    NASA Technical Reports Server (NTRS)

    Clemens, N. T.; Idicheria, C. A.; Boxx, I. G.

    2001-01-01

    It is well known that buoyancy has a major influence on the flow structure of turbulent nonpremixed jet flames. Buoyancy acts by inducing baroclinic torques, which generate large-scale vortical structures that can significantly modify the flow field. Furthermore, some suggest that buoyancy can substantially influence the large-scale structure of even nominally momentum-dominated flames, since the low velocity flow outside of the flame will be more susceptible to buoyancy effects. Even subtle buoyancy effects may be important because changes in the large-scale structure affects the local entrainment and fluctuating strain rate, and hence the structure of the flame. Previous studies that have compared the structure of normal- and micro-gravity nonpremixed jet flames note that flames in microgravity are longer and wider than in normal-gravity. This trend was observed for jet flames ranging from laminar to turbulent regimes. Furthermore, imaging of the flames has shown possible evidence of helical instabilities and disturbances starting from the base of the flame in microgravity. In contrast, these characteristics were not observed in normal-gravity. The objective of the present study is to further advance our knowledge of the effects of weak levels of buoyancy on the structure of transitional and turbulent nonpremixed jet flames. In later studies we will utilize the drop tower facilities at NASA Glenn Research Center (GRC), but the preliminary work described in this paper was conducted using the 1.25-second drop tower located at the University of Texas at Austin. A more detailed description of these experiments can be found in Idicheria et al.

  11. Constraining dark energy evolution with gravitational lensing by large scale structures

    SciTech Connect

    Benabed, Karim; Waerbeke, Ludovic van

    2004-12-15

    We study the sensitivity of weak lensing by large scale structures as a probe of the evolution of dark energy. We explore a two-parameters model of dark energy evolution, inspired by tracking quintessence models. To this end, we compute the likelihood of a few fiducial models with varying and nonvarying equation of states. For the different models, we investigate the dark energy parameter degeneracies with the mass power spectrum shape {gamma}, normalization {sigma}{sub 8}, and with the matter mean density {omega}{sub M}. We find that degeneracies are such that weak lensing turns out to be a good probe of dark energy evolution, even with limited knowledge on {gamma}, {sigma}{sub 8}, and {omega}{sub M}. This result is a strong motivation for performing large scale structure simulations beyond the simple constant dark energy models, in order to calibrate the nonlinear regime accurately. Such calibration could then be used for any large scale structure tests of dark energy evolution. Prospective for the Canada France Hawaii Telescope Legacy Survey and Super-Novae Acceleration Probe are given. These results complement nicely the cosmic microwave background and supernovae constraints.

  12. Large Scale Structure Studies: Final Results from a Rich Cluster Redshift Survey

    NASA Astrophysics Data System (ADS)

    Slinglend, K.; Batuski, D.; Haase, S.; Hill, J.

    1995-12-01

    The results from the COBE satellite show the existence of structure on scales on the order of 10% or more of the horizon scale of the universe. Rich clusters of galaxies from the Abell-ACO catalogs show evidence of structure on scales of 100 Mpc and hold the promise of confirming structure on the scale of the COBE result. Unfortunately, until now, redshift information has been unavailable for a large percentage of these clusters, so present knowledge of their three dimensional distribution has quite large uncertainties. Our approach in this effort has been to use the MX multifiber spectrometer on the Steward 2.3m to measure redshifts of at least ten galaxies in each of 88 Abell cluster fields with richness class R>= 1 and mag10 <= 16.8 (estimated z<= 0.12) and zero or one measured redshifts. This work has resulted in a deeper, 95% complete and more reliable sample of 3-D positions of rich clusters. The primary intent of this survey has been to constrain theoretical models for the formation of the structure we see in the universe today through 2-pt. spatial correlation function and other analyses of the large scale structures traced by these clusters. In addition, we have obtained enough redshifts per cluster to greatly improve the quality and size of the sample of reliable cluster velocity dispersions available for use in other studies of cluster properties. This new data has also allowed the construction of an updated and more reliable supercluster candidate catalog. Our efforts have resulted in effectively doubling the volume traced by these clusters. Presented here is the resulting 2-pt. spatial correlation function, as well as density plots and several other figures quantifying the large scale structure from this much deeper and complete sample. Also, with 10 or more redshifts in most of our cluster fields, we have investigated the extent of projection effects within the Abell catalog in an effort to quantify and understand how this may effect the Abell sample.

  13. Emergence of coherent structures and large-scale flows in motile suspensions.

    PubMed

    Saintillan, David; Shelley, Michael J

    2012-03-01

    The emergence of coherent structures, large-scale flows and correlated dynamics in suspensions of motile particles such as swimming micro-organisms or artificial microswimmers is studied using direct particle simulations. A detailed model is proposed for a slender rod-like particle that propels itself in a viscous fluid by exerting a prescribed tangential stress on its surface, and a method is devised for the efficient calculation of hydrodynamic interactions in large-scale suspensions of such particles using slender-body theory and a smooth particle-mesh Ewald algorithm. Simulations are performed with periodic boundary conditions for various system sizes and suspension volume fractions, and demonstrate a transition to large-scale correlated motions in suspensions of rear-actuated swimmers, or Pushers, above a critical volume fraction or system size. This transition, which is not observed in suspensions of head-actuated swimmers, or Pullers, is seen most clearly in particle velocity and passive tracer statistics. These observations are consistent with predictions from our previous mean-field kinetic theory, one of which states that instabilities will arise in uniform isotropic suspensions of Pushers when the product of the linear system size with the suspension volume fraction exceeds a given threshold. We also find that the collective dynamics of Pushers result in giant number fluctuations, local alignment of swimmers and strongly mixing flows. Suspensions of Pullers, which evince no large-scale dynamics, nonetheless display interesting deviations from the random isotropic state.

  14. Morphology of Large- and Meso-scale structures in the Mid and Lower Mantle

    NASA Astrophysics Data System (ADS)

    Lekic, V.; Cottaar, S.

    2015-12-01

    Seismic tomography tells us that the large-scale structure of the lower mantle is dominated by a pair of Large Low Shear Velocity Provinces (LLSVPs), and contains regions of faster-than-average velocities associated with past subduction. These structures are thought to influence and be influenced by mantle convection, and are linked to the introduction/creation, survival, and destruction of chemical heterogeneity in the deep interior. In fact, while sinking slabs are ipso facto associated with compositional variations, the laterally abrupt velocity changes across the boundaries of the LLSVPs - among other lines of evidence - indicate that the LLSVPs also represent a domain compositionally distinct from ambient mantle. The discovery of meso-scales structures, seismically similar to the LLSVPs and exemplified by the Perm Anomaly, suggests that compositional variations in the lower mantle might be tomographically discernible even at smaller length scales. Quantifying the morphology and spatial distribution of these seismically imaged structures provides important clues to the chemical heterogeneity and dynamical state of the Earth's deep interior. In this presentation, we determine the morphology of the slower-than-average, faster-than-average, and neutral seismic regions, in order to provide quantitative estimates of the locations, volumes, and shapes of lower mantle structures, including, but not limited to the African and Pacific LLSVPs. We do so by carrying out a cluster analysis of VS profiles with a sliding window in depth, which allows us to map out the three-dimensional morphology of the LLSVPs that is consistent across tomographic models. Based on these analyses, we estimate the volume of the LLSVPs to be 5-9% of the mantle, which is several times larger than past estimates. We then catalog the broad range of boundary geometries for the LLSVPs and compare them to results from high-resolution waveform studies, where available. Finally, we identify meso-scale

  15. MIC-Large Scale Magnetically Inflated Cable Structures for Space Power, Propulsion, Communications and Observational Applications

    NASA Astrophysics Data System (ADS)

    Powell, James; Maise, George; Rather, John

    2010-01-01

    A new approach for the erection of rigid large scale structures in space-MIC (Magnetically Inflated Cable)-is described. MIC structures are launched as a compact payload of superconducting cables and attached tethers. After reaching orbit, the superconducting cables are energized with electrical current. The magnet force interactions between the cables cause them to expand outwards into the final large structure. Various structural shapes and applications are described. The MIC structure can be a simple flat disc with a superconducting outer ring that supports a tether network holding a solar cell array, or it can form a curved mirror surface that concentrates light and focuses it on a smaller region-for example, a high flux solar array that generates electric power, a high temperature receiver that heats H2 propellant for high Isp propulsion, and a giant primary reflector for a telescope for astronomy and Earth surveillance. Linear dipole and quadrupole MIC structures are also possible. The linear quadrupole structure can be used for magnetic shielding against cosmic radiation for astronauts, for example. MIC could use lightweight YBCO superconducting HTS (High Temperature Superconductor) cables, that can operate with liquid N2 coolant at engineering current densities of ~105 amp/cm2. A 1 kilometer length of MIC cable would weigh only 3 metric tons, including superconductor, thermal insulations, coolant circuits, and refrigerator, and fit within a 3 cubic meter compact package for launch. Four potential MIC applications are described: Solar-thermal propulsion using H2 propellant, space based solar power generation for beaming power to Earth, a large space telescope, and solar electric generation for a manned lunar base. The first 3 applications use large MIC solar concentrating mirrors, while the 4th application uses a surface based array of solar cells on a magnetically levitated MIC structure to follow the sun. MIC space based mirrors can be very large and light

  16. Diffuse pionic gamma-ray emission from large-scale structures in the Fermi era

    SciTech Connect

    Dobardžić, A.; Prodanović, T. E-mail: prodanvc@df.uns.ac.rs

    2014-02-20

    For more than a decade now, the complete origin of the diffuse gamma-ray emission background (EGRB) has been unknown. Major components like unresolved star-forming galaxies (making ≲ 50% of the EGRB) and blazars (≲ 23%), have failed to explain the entire background observed by Fermi. Another, though subdominant, contribution is expected to come from the process of large-scale structure formation. The growth of structures is accompanied by accretion and merger shocks, which would, with at least some magnetic field present, give rise to a population of structure-formation cosmic rays (SFCRs). Though expected, this cosmic-ray population is still hypothetical and only very weak limits have been placed to their contribution to the EGRB. The most promising insight into SFCRs was expected to come from Fermi-LAT observations of clusters of galaxies, however, only upper limits and no detection have been placed. Here, we build a model of gamma-ray emission from large-scale accretion shocks implementing a source evolution calibrated with the Fermi-LAT cluster observation limits. Though our limits to the SFCR gamma-ray emission are weak (above the observed EGRB) in some cases, in others, some of our models can provide a good fit to the observed EGRB. More importantly, we show that these large-scale shocks could still give an important contribution to the EGRB, especially at high energies. Future detections of cluster gamma-ray emission would help place tighter constraints on our models and give us a better insight into large-scale shocks forming around them.

  17. Constructing perturbation theory kernels for large-scale structure in generalized cosmologies

    NASA Astrophysics Data System (ADS)

    Taruya, Atsushi

    2016-07-01

    We present a simple numerical scheme for perturbation theory (PT) calculations of large-scale structure. Solving the evolution equations for perturbations numerically, we construct the PT kernels as building blocks of statistical calculations, from which the power spectrum and/or correlation function can be systematically computed. The scheme is especially applicable to the generalized structure formation including modified gravity, in which the analytic construction of PT kernels is intractable. As an illustration, we show several examples for power spectrum calculations in f (R ) gravity and Λ CDM models.

  18. Bayesian inference of the initial conditions from large-scale structure surveys

    NASA Astrophysics Data System (ADS)

    Leclercq, Florent

    2016-10-01

    Analysis of three-dimensional cosmological surveys has the potential to answer outstanding questions on the initial conditions from which structure appeared, and therefore on the very high energy physics at play in the early Universe. We report on recently proposed statistical data analysis methods designed to study the primordial large-scale structure via physical inference of the initial conditions in a fully Bayesian framework, and applications to the Sloan Digital Sky Survey data release 7. We illustrate how this approach led to a detailed characterization of the dynamic cosmic web underlying the observed galaxy distribution, based on the tidal environment.

  19. An improved method to characterise the modulation of small-scale turbulent by large-scale structures

    NASA Astrophysics Data System (ADS)

    Agostini, Lionel; Leschziner, Michael; Gaitonde, Datta

    2015-11-01

    A key aspect of turbulent boundary layer dynamics is ``modulation,'' which refers to degree to which the intensity of coherent large-scale structures (LS) cause an amplification or attenuation of the intensity of the small-scale structures (SS) through large-scale-linkage. In order to identify the variation of the amplitude of the SS motion, the envelope of the fluctuations needs to be determined. Mathis et al. (2009) proposed to define this latter by low-pass filtering the modulus of the analytic signal built from the Hilbert transform of SS. The validity of this definition, as a basis for quantifying the modulated SS signal, is re-examined on the basis of DNS data for a channel flow. The analysis shows that the modulus of the analytic signal is very sensitive to the skewness of its PDF, which is dependent, in turn, on the sign of the LS fluctuation and thus of whether these fluctuations are associated with sweeps or ejections. The conclusion is that generating an envelope by use of a low-pass filtering step leads to an important loss of information associated with the effects of the local skewness of the PDF of the SS on the modulation process. An improved Hilbert-transform-based method is proposed to characterize the modulation of SS turbulence by LS structures

  20. Effective field theory of large scale structure at two loops: The apparent scale dependence of the speed of sound

    NASA Astrophysics Data System (ADS)

    Baldauf, Tobias; Mercolli, Lorenzo; Zaldarriaga, Matias

    2015-12-01

    We study the effective field theory (EFT) of large-scale structure for cosmic density and momentum fields. We show that the finite part of the two-loop calculation and its counterterms introduces an apparent scale dependence for the leading-order parameter cs2 of the EFT starting at k =0.1 h Mpc-1 . These terms limit the range over which one can trust the one-loop EFT calculation at the 1% level to k <0.1 h Mpc-1 at redshift z =0 . We construct a well-motivated one-parameter ansatz to fix the relative size of the one- and two-loop counterterms using their high-k sensitivity. Although this one-parameter model is a very restrictive choice for the counterterms, it explains the apparent scale dependence of cs2 seen in simulations. It is also able to capture the scale dependence of the density power spectrum up to k ≈0.3 h Mpc-1 at the 1% level at redshift z =0 . Considering a simple scheme for the resummation of large-scale motions, we find that the two-loop calculation reduces the need for this IR resummation at k <0.2 h Mpc-1 . Finally, we extend our calculation to momentum statistics and show that the same one-parameter model can also describe density-momentum and momentum-momentum statistics.

  1. On the velocity in the Effective Field Theory of Large Scale Structures

    NASA Astrophysics Data System (ADS)

    Mercolli, Lorenzo; Pajer, Enrico

    2014-03-01

    We compute the renormalized two-point functions of density, divergence and vorticity of the velocity in the Effective Field Theory of Large Scale Structures. Because of momentum and mass conservation, the corrections from short scales to the large-scale power spectra of density, divergence and vorticity must start at order k4. For the vorticity this constitutes one of the two leading terms. Exact (approximated) self-similarity of an Einstein-de Sitter (ΛCDM) background fixes the time dependence so that the vorticity power spectrum at leading order is determined by the symmetries of the problem and the power spectrum around the non-linear scale. We show that to cancel all divergences in the velocity correlators one needs new counterterms. These fix the definition of velocity and do not represent new properties of the system. For an Einstein-de Sitter universe, we show that all three renormalized cross- and auto-correlation functions have the same structure but different numerical coefficients, which we compute. We elucidate the differences between using momentum and velocity.

  2. Time-sliced perturbation theory for large scale structure I: general formalism

    NASA Astrophysics Data System (ADS)

    Blas, Diego; Garny, Mathias; Ivanov, Mikhail M.; Sibiryakov, Sergey

    2016-07-01

    We present a new analytic approach to describe large scale structure formation in the mildly non-linear regime. The central object of the method is the time-dependent probability distribution function generating correlators of the cosmological observables at a given moment of time. Expanding the distribution function around the Gaussian weight we formulate a perturbative technique to calculate non-linear corrections to cosmological correlators, similar to the diagrammatic expansion in a three-dimensional Euclidean quantum field theory, with time playing the role of an external parameter. For the physically relevant case of cold dark matter in an Einstein-de Sitter universe, the time evolution of the distribution function can be found exactly and is encapsulated by a time-dependent coupling constant controlling the perturbative expansion. We show that all building blocks of the expansion are free from spurious infrared enhanced contributions that plague the standard cosmological perturbation theory. This paves the way towards the systematic resummation of infrared effects in large scale structure formation. We also argue that the approach proposed here provides a natural framework to account for the influence of short-scale dynamics on larger scales along the lines of effective field theory.

  3. On the velocity in the Effective Field Theory of Large Scale Structures

    SciTech Connect

    Mercolli, Lorenzo; Pajer, Enrico E-mail: enrico.pajer@gmail.com

    2014-03-01

    We compute the renormalized two-point functions of density, divergence and vorticity of the velocity in the Effective Field Theory of Large Scale Structures. Because of momentum and mass conservation, the corrections from short scales to the large-scale power spectra of density, divergence and vorticity must start at order k{sup 4}. For the vorticity this constitutes one of the two leading terms. Exact (approximated) self-similarity of an Einstein-de Sitter (ΛCDM) background fixes the time dependence so that the vorticity power spectrum at leading order is determined by the symmetries of the problem and the power spectrum around the non-linear scale. We show that to cancel all divergences in the velocity correlators one needs new counterterms. These fix the definition of velocity and do not represent new properties of the system. For an Einstein-de Sitter universe, we show that all three renormalized cross- and auto-correlation functions have the same structure but different numerical coefficients, which we compute. We elucidate the differences between using momentum and velocity.

  4. Neurodevelopmental alterations of large-scale structural networks in children with new-onset epilepsy.

    PubMed

    Bonilha, Leonardo; Tabesh, Ali; Dabbs, Kevin; Hsu, David A; Stafstrom, Carl E; Hermann, Bruce P; Lin, Jack J

    2014-08-01

    Recent neuroimaging and behavioral studies have revealed that children with new onset epilepsy already exhibit brain structural abnormalities and cognitive impairment. How the organization of large-scale brain structural networks is altered near the time of seizure onset and whether network changes are related to cognitive performances remain unclear. Recent studies also suggest that regional brain volume covariance reflects synchronized brain developmental changes. Here, we test the hypothesis that epilepsy during early-life is associated with abnormalities in brain network organization and cognition. We used graph theory to study structural brain networks based on regional volume covariance in 39 children with new-onset seizures and 28 healthy controls. Children with new-onset epilepsy showed a suboptimal topological structural organization with enhanced network segregation and reduced global integration compared with controls. At the regional level, structural reorganization was evident with redistributed nodes from the posterior to more anterior head regions. The epileptic brain network was more vulnerable to targeted but not random attacks. Finally, a subgroup of children with epilepsy, namely those with lower IQ and poorer executive function, had a reduced balance between network segregation and integration. Taken together, the findings suggest that the neurodevelopmental impact of new onset childhood epilepsies alters large-scale brain networks, resulting in greater vulnerability to network failure and cognitive impairment.

  5. Large-scale Structure around a z=2.1 Cluster

    NASA Astrophysics Data System (ADS)

    Hung, Chao-Ling; Casey, Caitlin M.; Chiang, Yi-Kuan; Capak, Peter L.; Cowley, Michael J.; Darvish, Behnam; Kacprzak, Glenn G.; Kovač, K.; Lilly, Simon J.; Nanayakkara, Themiya; Spitler, Lee R.; Tran, Kim-Vy H.; Yuan, Tiantian

    2016-08-01

    The most prodigious starburst galaxies are absent in massive galaxy clusters today, but their connection with large-scale environments is less clear at z≳ 2. We present a search of large-scale structure around a galaxy cluster core at z = 2.095 using a set of spectroscopically confirmed galaxies. We find that both color-selected star-forming galaxies (SFGs) and dusty star-forming galaxies (DSFGs) show significant overdensities around the z = 2.095 cluster. A total of eight DSFGs (including three X-ray luminous active galactic nuclei, AGNs) and 34 SFGs are found within a 10‧ radius (corresponds to ˜15 cMpc at z˜ 2.1) from the cluster center and within a redshift range of {{Δ }}z=0.02, which leads to galaxy overdensities of {δ }{{DSFG}}˜ 12.3 and {δ }{{SFG}}˜ 2.8. The cluster core and the extended DSFG- and SFG-rich structures together demonstrate an active cluster formation phase, in which the cluster is accreting a significant amount of material from large-scale structure while the more mature core may begin to virialize. Our finding of this DSFG-rich structure, along with a number of other protoclusters with excess DSFGs and AGNs found to date, suggest that the overdensities of these rare sources indeed trace significant mass overdensities. However, it remains puzzling how these intense star formers are triggered concurrently. Although an increased probability of galaxy interactions and/or enhanced gas supply can trigger the excess of DSFGs, our stacking analysis based on 850 μm images and morphological analysis based on rest-frame optical imaging do not show such enhancements of merger fraction and gas content in this structure.

  6. Measures of large-scale structure in the CfA redshift survey slices

    NASA Technical Reports Server (NTRS)

    De Lapparent, Valerie; Geller, Margaret J.; Huchra, John P.

    1991-01-01

    Variations of the counts-in-cells with cell size are used here to define two statistical measures of large-scale clustering in three 6 deg slices of the CfA redshift survey. A percolation criterion is used to estimate the filling factor which measures the fraction of the total volume in the survey occupied by the large-scale structures. For the full 18 deg slice of the CfA redshift survey, f is about 0.25 + or - 0.05. After removing groups with more than five members from two of the slices, variations of the counts in occupied cells with cell size have a power-law behavior with a slope beta about 2.2 on scales from 1-10/h Mpc. Application of both this statistic and the percolation analysis to simulations suggests that a network of two-dimensional structures is a better description of the geometry of the clustering in the CfA slices than a network of one-dimensional structures. Counts-in-cells are also used to estimate at 0.3 galaxy h-squared/Mpc the average galaxy surface density in sheets like the Great Wall.

  7. Large-scale structure after COBE: Peculiar velocities and correlations of cold dark matter halos

    NASA Technical Reports Server (NTRS)

    Zurek, Wojciech H.; Quinn, Peter J.; Salmon, John K.; Warren, Michael S.

    1994-01-01

    Large N-body simulations on parallel supercomputers allow one to simultaneously investigate large-scale structure and the formation of galactic halos with unprecedented resolution. Our study shows that the masses as well as the spatial distribution of halos on scales of tens of megaparsecs in a cold dark matter (CDM) universe with the spectrum normalized to the anisotropies detected by Cosmic Background Explorer (COBE) is compatible with the observations. We also show that the average value of the relative pairwise velocity dispersion sigma(sub v) - used as a principal argument against COBE-normalized CDM models-is significantly lower for halos than for individual particles. When the observational methods of extracting sigma(sub v) are applied to the redshift catalogs obtained from the numerical experiments, estimates differ significantly between different observation-sized samples and overlap observational estimates obtained following the same procedure.

  8. SPIN ALIGNMENTS OF SPIRAL GALAXIES WITHIN THE LARGE-SCALE STRUCTURE FROM SDSS DR7

    SciTech Connect

    Zhang, Youcai; Yang, Xiaohu; Luo, Wentao; Wang, Huiyuan; Wang, Lei; Mo, H. J.; Van den Bosch, Frank C. E-mail: xyang@sjtu.edu.cn

    2015-01-01

    Using a sample of spiral galaxies selected from the Sloan Digital Sky Survey Data Release 7 and Galaxy Zoo 2, we investigate the alignment of spin axes of spiral galaxies with their surrounding large-scale structure, which is characterized by the large-scale tidal field reconstructed from the data using galaxy groups above a certain mass threshold. We find that the spin axes only have weak tendencies to be aligned with (or perpendicular to) the intermediate (or minor) axis of the local tidal tensor. The signal is the strongest in a cluster environment where all three eigenvalues of the local tidal tensor are positive. Compared to the alignments between halo spins and the local tidal field obtained in N-body simulations, the above observational results are in best agreement with those for the spins of inner regions of halos, suggesting that the disk material traces the angular momentum of dark matter halos in the inner regions.

  9. A low-dimensional model for large-scale coherent structures

    NASA Astrophysics Data System (ADS)

    Bai, Kunlun; Ji, Dandan; Brown, Eric

    2015-11-01

    We demonstrate a methodology to predict the dynamics of the large-scale coherent structures in turbulence using a simple low dimensional stochastic model proposed by Brown and Ahlers (Phys. Fluids, 2008). The model terms are derived from the Navier-Stokes equations, including a potential term depending on the geometry of the system. The model has previously described several dynamical modes of the large-scale circulation (LSC) in turbulent Rayleigh-Bénard convection. Here we test a model prediction for the existence of a new mode where the LSC stochastically changes direction to align with different diagonals of a cubic container. The model successfully predicts the switching rate of the LSC at different tilting conditions. The success of the prediction of the switching mode demonstrates that a low-dimensional turbulent model can quantitatively predict the existence and properties of different dynamical states that result from boundary geometry.

  10. Energetics and Structural Characterization of the large-scale Functional Motion of Adenylate Kinase

    NASA Astrophysics Data System (ADS)

    Formoso, Elena; Limongelli, Vittorio; Parrinello, Michele

    2015-02-01

    Adenylate Kinase (AK) is a signal transducing protein that regulates cellular energy homeostasis balancing between different conformations. An alteration of its activity can lead to severe pathologies such as heart failure, cancer and neurodegenerative diseases. A comprehensive elucidation of the large-scale conformational motions that rule the functional mechanism of this enzyme is of great value to guide rationally the development of new medications. Here using a metadynamics-based computational protocol we elucidate the thermodynamics and structural properties underlying the AK functional transitions. The free energy estimation of the conformational motions of the enzyme allows characterizing the sequence of events that regulate its action. We reveal the atomistic details of the most relevant enzyme states, identifying residues such as Arg119 and Lys13, which play a key role during the conformational transitions and represent druggable spots to design enzyme inhibitors. Our study offers tools that open new areas of investigation on large-scale motion in proteins.

  11. Quantifying the colour-dependent stochasticity of large-scale structure

    NASA Astrophysics Data System (ADS)

    Patej, Anna; Eisenstein, Daniel

    2016-08-01

    We address the question of whether massive red and blue galaxies trace the same large-scale structure at z ˜ 0.6 using the CMASS sample of galaxies from Data Release 12 of the Sloan Digital Sky Survey III. After splitting the catalogue into subsamples of red and blue galaxies using a simple colour cut, we measure the clustering of both subsamples and construct the correlation coefficient, r, using two statistics. The correlation coefficient quantifies the stochasticity between the two subsamples, which we examine over intermediate scales (20 ≲ R ≲ 100 h-1 Mpc). We find that on these intermediate scales, the correlation coefficient is consistent with 1; in particular, we find r > 0.95 taking into account both statistics and r > 0.974 using the favoured statistic.

  12. The Effective Field Theory of Large Scale Structures at two loops

    SciTech Connect

    Carrasco, John Joseph M.; Foreman, Simon; Green, Daniel; Senatore, Leonardo E-mail: sfore@stanford.edu E-mail: senatore@stanford.edu

    2014-07-01

    Large scale structure surveys promise to be the next leading probe of cosmological information. It is therefore crucial to reliably predict their observables. The Effective Field Theory of Large Scale Structures (EFTofLSS) provides a manifestly convergent perturbation theory for the weakly non-linear regime of dark matter, where correlation functions are computed in an expansion of the wavenumber k of a mode over the wavenumber associated with the non-linear scale k{sub NL}. Since most of the information is contained at high wavenumbers, it is necessary to compute higher order corrections to correlation functions. After the one-loop correction to the matter power spectrum, we estimate that the next leading one is the two-loop contribution, which we compute here. At this order in k/k{sub NL}, there is only one counterterm in the EFTofLSS that must be included, though this term contributes both at tree-level and in several one-loop diagrams. We also discuss correlation functions involving the velocity and momentum fields. We find that the EFTofLSS prediction at two loops matches to percent accuracy the non-linear matter power spectrum at redshift zero up to k∼ 0.6 h Mpc{sup −1}, requiring just one unknown coefficient that needs to be fit to observations. Given that Standard Perturbation Theory stops converging at redshift zero at k∼ 0.1 h Mpc{sup −1}, our results demonstrate the possibility of accessing a factor of order 200 more dark matter quasi-linear modes than naively expected. If the remaining observational challenges to accessing these modes can be addressed with similar success, our results show that there is tremendous potential for large scale structure surveys to explore the primordial universe.

  13. The origin of large scale structure in mantle convection: effects of plate motions and viscosity stratification

    SciTech Connect

    Bunge, H.; Richards, M.A.

    1996-10-01

    Convection in Earth{close_quote}s mantle is dominated by long-wavelength structure, as evidenced by the very {open_quote}{open_quote}red{close_quote}{close_quote} spectra of both seismic velocity heterogeneity in the deep mantle and the non-hydrostatic gravity field, or geoid. Here we show that this large-scale structure may be a consequence of two factors that influence the scale of mantle convection. First, the existence of surface plates, which tend to organize the flow. Second, a substantial increase in lower mantle viscosity for which there is considerable independent geophysical evidence. Combining these two factors in 3-D spherical mantle convection models explains rather well the observed seismic spectrum of mantle heterogeneity. {copyright} American Geophysical Union 1996

  14. Large-scale structure from cosmic-string loops in a baryon-dominated universe

    NASA Technical Reports Server (NTRS)

    Melott, Adrian L.; Scherrer, Robert J.

    1988-01-01

    The results are presented of a numerical simulation of the formation of large-scale structure in a universe with Omega(0) = 0.2 and h = 0.5 dominated by baryons in which cosmic strings provide the initial density perturbations. The numerical model yields a power spectrum. Nonlinear evolution confirms that the model can account for 700 km/s bulk flows and a strong cluster-cluster correlation, but does rather poorly on smaller scales. There is no visual 'filamentary' structure, and the two-point correlation has too steep a logarithmic slope. The value of G mu = 4 x 10 to the -6th is significantly lower than previous estimates for the value of G mu in baryon-dominated cosmic string models.

  15. Recent Results from Broad-Band Intensity Mapping Measurements of Cosmic Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Zemcov, Michael B.; CIBER, Herschel-SPIRE

    2016-01-01

    Intensity mapping integrates the total emission in a given spectral band over the universe's history. Tomographic measurements of cosmic structure can be performed using specific line tracers observed in narrow bands, but a wealth of information is also available from broad-band observations performed by instruments capable of capturing high-fidelity, wide-angle images of extragalactic emission. Sensitive to the continuum emission from faint and diffuse sources, these broad-band measurements provide a view on cosmic structure traced by components not readily detected in point source surveys. After accounting for measurement effects and astrophysical foregrounds, the angular power spectra of such data can be compared to predictions from models to yield powerful insights into the history of cosmic structure formation. This talk will highlight some recent measurements of large scale structure performed using broad-band intensity mapping methods that have given new insights on faint, distant, and diffuse components in the extragalactic background light.

  16. Extraction of very-large scale structures in turbulent boundary layer

    NASA Astrophysics Data System (ADS)

    Roux, Stéphane; Kerhervé, Franck; Stanislas, Michel; Marc Foucaut, Jean; Delville, Joel; Team

    2012-11-01

    The examined flow is a zero-pressure gradient turbulent boundary layer. The data used are taken from the joined experimental campaign conducted during the european WALLTURB program in the large wind tunnel at Laboratoire de Mécanique de Lille (LML). The free-stream velocity is 10 m/s. At the investigated position, the boundary layer thickness is 30 cm and the Reynolds number based on the momentum thickness is 19100. A methodology for eduction of super-structures is presented. These structures are characterised by a large degree of persistance and are thought to participate actively to the turbulence regeneration in the near-wall region (Marusic et al. 2010). A time-resolved estimate of the three-dimensionnal structures is obtained by combining low-speed two-dimensional stereo-PIV at 4 Hz and a two-dimensionnal rake of 143 single hot-wire probes at 30 kHz. The very large scale structures are clearly reconstructed which exhibit a streamwise extent an order of magnitude larger than the boundary layer thickness. Interest is particulary focused on the low-speed species of these structures. Associated coounter-rotating vortices are also evidenced in good agreement with the litterature.

  17. Bias to CMB lensing measurements from the bispectrum of large-scale structure

    NASA Astrophysics Data System (ADS)

    Böhm, Vanessa; Schmittfull, Marcel; Sherwin, Blake D.

    2016-08-01

    The rapidly improving precision of measurements of gravitational lensing of the cosmic microwave background (CMB) also requires a corresponding increase in the precision of theoretical modeling. A commonly made approximation is to model the CMB deflection angle or lensing potential as a Gaussian random field. In this paper, however, we analytically quantify the influence of the non-Gaussianity of large-scale structure (LSS) lenses, arising from nonlinear structure formation, on CMB lensing measurements. In particular, evaluating the impact of the nonzero bispectrum of large-scale structure on the relevant CMB four-point correlation functions, we find that there is a bias to estimates of the CMB lensing power spectrum. For temperature-based lensing reconstruction with CMB stage III and stage IV experiments, we find that this lensing power spectrum bias is negative and is of order 1% of the signal. This corresponds to a shift of multiple standard deviations for these upcoming experiments. We caution, however, that our numerical calculation only evaluates two of the largest bias terms and, thus, only provides an approximate estimate of the full bias. We conclude that further investigation into lensing biases from nonlinear structure formation is required and that these biases should be accounted for in future lensing analyses.

  18. Large-scale structure from quantum fluctuations in the early universe

    SciTech Connect

    Michael Turner

    2000-05-25

    A better understanding of the formation of large-scale structure in the Universe is arguably the most pressing question in cosmology. The most compelling and promising theoretical paradigm, Inflation + Cold Dark Matter, holds that the density inhomogeneities that seeded the formation of structure in the Universe originated from quantum fluctuations arising during inflation and that the bulk of the dark matter exists as slowing moving elementary particles (cold dark matter) left over from the earliest, fiery moments. Large redshift surveys (such as the SDSS and 2dF) and high-resolution measurements of CBR anisotropy (to be made by the MAP and Planck Surveyor satellites) have the potential to decisively test Inflation + Cold Dark Matter and to open a window to the very early Universe and fundamental physics.

  19. Large-scale structure in a texture-seeded cold dark matter cosmogony

    NASA Technical Reports Server (NTRS)

    Park, Changbom; Spergel, David N.; Turok, Nail

    1991-01-01

    This paper studies the formation of large-scale structure by global texture in a flat universe dominated by cold dark matter. A code for evolution of the texture fields was combined with an N-body code for evolving the dark matter. The results indicate some promising aspects: with only one free parameter, the observed galaxy-galaxy correlation function is reproduced, clusters of galaxies are found to be significantly clustered on a scale of 20-50/h Mpc, and coherent structures of over 50/h Mpc in the galaxy distribution were found. The large-scale streaming motions observed are in good agreement with the observations: the average magnitude of the velocity field smoothed over 30/h Mpc is 430 km/sec. Global texture produces a cosmic Mach number that is compatible with observation. Also, significant evolution of clusters at low redshift was seen. Possible problems for the theory include too high velocity dispersions in clusters, and voids which are not as empty as those observed.

  20. Swirling around filaments: are large-scale structure vortices spinning up dark haloes?

    NASA Astrophysics Data System (ADS)

    Laigle, C.; Pichon, C.; Codis, S.; Dubois, Y.; Le Borgne, D.; Pogosyan, D.; Devriendt, J.; Peirani, S.; Prunet, S.; Rouberol, S.; Slyz, A.; Sousbie, T.

    2015-01-01

    The kinematic analysis of dark matter and hydrodynamical simulations suggests that the vorticity in large-scale structure is mostly confined to, and predominantly aligned with, their filaments, with an excess of probability of 20 per cent to have the angle between vorticity and filaments direction lower than 60° relative to random orientations. The cross-sections of these filaments are typically partitioned into four quadrants with opposite vorticity sign, arising from multiple flows, originating from neighbouring walls. The spins of haloes embedded within these filaments are consistently aligned with this vorticity for any halo mass, with a stronger alignment for the most massive structures up to an excess of probability of 165 per cent. The global geometry of the flow within the cosmic web is therefore qualitatively consistent with a spin acquisition for smaller haloes induced by this large-scale coherence, as argued in Codis et al. In effect, secondary anisotropic infall (originating from the vortex-rich filament within which these lower-mass haloes form) dominates the angular momentum budget of these haloes. The transition mass from alignment to orthogonality is related to the size of a given multi-flow region with a given polarity. This transition may be reconciled with the standard tidal torque theory if the latter is augmented so as to account for the larger scale anisotropic environment of walls and filaments.

  1. Constraining the initial conditions of the Universe using large scale structure

    SciTech Connect

    Agarwal, Nishant; Ho, Shirley; Shandera, Sarah E-mail: shirleyh@andrew.cmu.edu

    2014-02-01

    Primordial non-Gaussianity induces a scale-dependent bias in large scale structure (LSS) data, proportional to f{sub NL}/k{sup 2} for the exact local ansatz. Recent work has shown that models of inflation that predict a large squeezed limit bispectrum, such as multi-field models and single field inflation with a modified initial state, typically give rise to a generalized local ansatz, with the scale-dependent bias now proportional to A{sub NL}/k{sup α}. We use photometric measurements of the angular power spectrum of luminous red galaxies and quasars in the Sloan Digital Sky Survey Data Release Eight (SDSS DR8) with the above parameterization to constrain the amplitude A{sub NL} and scale-dependence α. We find that the marginalized upper limit on α is 2.0 at the 95% confidence level, consistent with the local ansatz. We also present Fisher forecasts for a survey of the same size as DR8 to assess the role of systematics in current photometric LSS data. Moreover, we present analytic results on the expected mass dependence of A{sub NL} for different inflationary models, which can be an important observable for future surveys, if primordial non-Gaussianity is non-zero.

  2. Measurement of large- and superlarge-scale structures of the universe

    NASA Astrophysics Data System (ADS)

    Buryak, Olga E.; Doroshkevich, Andrei G.; Fong, Richard

    1994-10-01

    Gravitational instability theory provides our physical understanding of how structure forms in the universe. The growth of the velocity field leads to the formation of filaments or chains of galaxies, which we shall term large-scale structure (LSS). As galaxies are not continuous tracers of structure, this leads us to introduce the concept of a 'broken network structure' as a model of lSS. Furthermore, modulation by the gravitational potential results in 'voids' containing regions of positive potential with boundaries of sheets or 'walls' of rich filaments, which we shall identify as superlarge-scale structure (SLSS), with then a 'broken cellular structure' as a model of SLSS. Observationally, large galaxy redshift surveys corroborate the theory by their striking in the universe are simply the surface density of filaments, that is, the number intersecting unit area, and the size of 'cells'. We introduce here a new simple method of analysis to measure these directly. As this present method deals with pencil beam surveys, instead of attempting to measure the cell size we measure the linear density of 'sheets' that is, the number intersecting a line of unit length. As the more frequent elements of SLSS are probable superclusters and rich filaments of galaxies, we shall simply term an element of SLSS a 'supercluster'; to a pencil beam beam survey such elements appear sheetlike. We test out the method using simple numerical simulations of such structure, as well as on simulations of Poisson and the geometric Soneira-Peebles hierarchical models, which clearly have no such structure. In an exploratory investigation of the method with real data, we apply it to the presently available deep pencil beam galaxy redshift surveys. We find for the mean surface density of filaments sigmaf approximately = 0.45 x 10-2 h2/sq Mpc, which corresponds to a mean separation of Df approximately = 14/h Mpc, corresponding to a mean distance between superclusters of Ds approximately = 50/h Mpc

  3. Inflation Physics from the Cosmic Microwave Background and Large Scale Structure

    NASA Technical Reports Server (NTRS)

    Abazajian, K.N.; Arnold,K.; Austermann, J.; Benson, B.A.; Bischoff, C.; Bock, J.; Bond, J.R.; Borrill, J.; Buder, I.; Burke, D.L.; Calabrese, E.; Carlstrom, J.E.; Carvalho, C.S.; Chang, C.L.; Chiang, H.C.; Church, S.; Cooray, A.; Crawford, T.M.; Crill, B.P.; Dawson, K.S.; Das, S.; Devline, M.J.; Dobbs, M.; Dodelson, S; Wollack, E. J.

    2013-01-01

    Fluctuations in the intensity and polarization of the cosmic microwave background (CMB) and the large-scale distribution of matter in the universe each contain clues about the nature of the earliest moments of time. The next generation of CMB and large-scale structure (LSS) experiments are poised to test the leading paradigm for these earliest moments---the theory of cosmic inflation---and to detect the imprints of the inflationary epoch, thereby dramatically increasing our understanding of fundamental physics and the early universe. A future CMB experiment with sufficient angular resolution and frequency coverage that surveys at least 1 of the sky to a depth of 1 uK-arcmin can deliver a constraint on the tensor-to-scalar ratio that will either result in a 5-sigma measurement of the energy scale of inflation or rule out all large-field inflation models, even in the presence of foregrounds and the gravitational lensing B-mode signal. LSS experiments, particularly spectroscopic surveys such as the Dark Energy Spectroscopic Instrument, will complement the CMB effort by improving current constraints on running of the spectral index by up to a factor of four, improving constraints on curvature by a factor of ten, and providing non-Gaussianity constraints that are competitive with the current CMB bounds.

  4. Isocurvature modes and Baryon Acoustic Oscillations II: gains from combining CMB and Large Scale Structure

    SciTech Connect

    Carbone, Carmelita; Mangilli, Anna; Verde, Licia E-mail: anna.mangilli@icc.ub.edu

    2011-09-01

    We consider cosmological parameters estimation in the presence of a non-zero isocurvature contribution in the primordial perturbations. A previous analysis showed that even a tiny amount of isocurvature perturbation, if not accounted for, could affect standard rulers calibration from Cosmic Microwave Background observations such as those provided by the Planck mission, affect Baryon Acoustic Oscillations interpretation, and introduce biases in the recovered dark energy properties that are larger than forecasted statistical errors from future surveys. Extending on this work, here we adopt a general fiducial cosmology which includes a varying dark energy equation of state parameter and curvature. Beside Baryon Acoustic Oscillations measurements, we include the information from the shape of the galaxy power spectrum and consider a joint analysis of a Planck-like Cosmic Microwave Background probe and a future, space-based, Large Scale Structure probe not too dissimilar from recently proposed surveys. We find that this allows one to break the degeneracies that affect the Cosmic Microwave Background and Baryon Acoustic Oscillations combination. As a result, most of the cosmological parameter systematic biases arising from an incorrect assumption on the isocurvature fraction parameter f{sub iso}, become negligible with respect to the statistical errors. We find that the Cosmic Microwave Background and Large Scale Structure combination gives a statistical error σ(f{sub iso}) ∼ 0.008, even when curvature and a varying dark energy equation of state are included, which is smaller that the error obtained from Cosmic Microwave Background alone when flatness and cosmological constant are assumed. These results confirm the synergy and complementarity between Cosmic Microwave Background and Large Scale Structure, and the great potential of future and planned galaxy surveys.

  5. Large-scale genetic structuring of a widely distributed carnivore--the Eurasian lynx (Lynx lynx).

    PubMed

    Rueness, Eli K; Naidenko, Sergei; Trosvik, Pål; Stenseth, Nils Chr

    2014-01-01

    Over the last decades the phylogeography and genetic structure of a multitude of species inhabiting Europe and North America have been described. The flora and fauna of the vast landmasses of north-eastern Eurasia are still largely unexplored in this respect. The Eurasian lynx is a large felid that is relatively abundant over much of the Russian sub-continent and the adjoining countries. Analyzing 148 museum specimens collected throughout its range over the last 150 years we have described the large-scale genetic structuring in this highly mobile species. We have investigated the spatial genetic patterns using mitochondrial DNA sequences (D-loop and cytochrome b) and 11 microsatellite loci, and describe three phylogenetic clades and a clear structuring along an east-west gradient. The most likely scenario is that the contemporary Eurasian lynx populations originated in central Asia and that parts of Europe were inhabited by lynx during the Pleistocene. After the Last Glacial Maximum (LGM) range expansions lead to colonization of north-western Siberia and Scandinavia from the Caucasus and north-eastern Siberia from a refugium further east. No evidence of a Berinigan refugium could be detected in our data. We observed restricted gene flow and suggest that future studies of the Eurasian lynx explore to what extent the contemporary population structure may be explained by ecological variables.

  6. Large-Scale Genetic Structuring of a Widely Distributed Carnivore - The Eurasian Lynx (Lynx lynx)

    PubMed Central

    Rueness, Eli K.; Naidenko, Sergei; Trosvik, Pål; Stenseth, Nils Chr.

    2014-01-01

    Over the last decades the phylogeography and genetic structure of a multitude of species inhabiting Europe and North America have been described. The flora and fauna of the vast landmasses of north-eastern Eurasia are still largely unexplored in this respect. The Eurasian lynx is a large felid that is relatively abundant over much of the Russian sub-continent and the adjoining countries. Analyzing 148 museum specimens collected throughout its range over the last 150 years we have described the large-scale genetic structuring in this highly mobile species. We have investigated the spatial genetic patterns using mitochondrial DNA sequences (D-loop and cytochrome b) and 11 microsatellite loci, and describe three phylogenetic clades and a clear structuring along an east-west gradient. The most likely scenario is that the contemporary Eurasian lynx populations originated in central Asia and that parts of Europe were inhabited by lynx during the Pleistocene. After the Last Glacial Maximum (LGM) range expansions lead to colonization of north-western Siberia and Scandinavia from the Caucasus and north-eastern Siberia from a refugium further east. No evidence of a Berinigan refugium could be detected in our data. We observed restricted gene flow and suggest that future studies of the Eurasian lynx explore to what extent the contemporary population structure may be explained by ecological variables. PMID:24695745

  7. A study of large, medium and small scale structures in the topside ionosphere

    NASA Technical Reports Server (NTRS)

    Gross, Stanley H.; Kuo, Spencer P.; Shmoys, Jerry

    1986-01-01

    Alouette and ISIS data were studied for large, medium, and small scale structures in the ionosphere. Correlation was also sought with measurements by other satellites, such as the Atmosphere Explorer C and E and the Dynamic Explorer 2 satellites, of both neutrals and ionization, and with measurements by ground facilities, such as the incoherent scatter radars. Large scale coherent wavelike structures were found from ISIS 2 electron density contours from above the F peak to nearly the satellite altitude. Such structures were also found to correlate with the observation by AE-C below the F peak during a conjunction of the two satellites. Vertical wavefronts found in the upper F region suggest the dominance of diffusion along field lines as well. Also discovered were multiple, evenly spaced field-aligned ducts in the F region that, at low latitudes, extended to the other hemisphere and were in the form of field-aligned sheets in the east-west direction. Low latitude heating events were discovered that could serve as sources for waves in the ionosphere.

  8. Networks of silicon nanowires: A large-scale atomistic electronic structure analysis

    SciTech Connect

    Keleş, Ümit; Bulutay, Ceyhun; Liedke, Bartosz; Heinig, Karl-Heinz

    2013-11-11

    Networks of silicon nanowires possess intriguing electronic properties surpassing the predictions based on quantum confinement of individual nanowires. Employing large-scale atomistic pseudopotential computations, as yet unexplored branched nanostructures are investigated in the subsystem level as well as in full assembly. The end product is a simple but versatile expression for the bandgap and band edge alignments of multiply-crossing Si nanowires for various diameters, number of crossings, and wire orientations. Further progress along this line can potentially topple the bottom-up approach for Si nanowire networks to a top-down design by starting with functionality and leading to an enabling structure.

  9. Iterative methods for large scale static analysis of structures on a scalable multiprocessor supercomputer

    NASA Technical Reports Server (NTRS)

    Sobh, Nahil Atef

    1992-01-01

    A parallel Preconditioned Conjugate Gradient (PCG) iterative solver has been developed and implemented on the iPSC-860 scalable hypercube. This new implementation makes use of the Parallel Automated Runtime Toolkit at ICASE (PARTI) primitives to efficiently program irregular communications patterns that exist in general sparse matrices and in particular in the finite element sparse stiffness matrices. The iterative PCG has been used to solve the finite element equations that result from discretizing large scale aerospace structures. In particular, the static response of the High Speed Civil Transport (HSCT) finite element model is solved on the iPSC-860.

  10. Phase transitions as the origin of large scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Turok, Neil

    1988-01-01

    A review of the formation of large scale structure through gravitational growth of primordial perturbations is given. This is followed by a discussion of how symmetry breaking phase transitions in the early universe might have produced the required perturbations, in particular through the formation and evolution of a network of cosmic strings. Finally, the statistical mechanics of string networks, for both cosmic and fundamental strings is discussed, leading to some more speculative ideas on the possible role of fundamental strings (superstrings or heterotic strings) in the very early universe.

  11. Dusty Starbursts within a z=3 Large Scale Structure revealed by ALMA

    NASA Astrophysics Data System (ADS)

    Umehata, Hideki

    The role of the large-scale structure is one of the most important theme in studying galaxy formation and evolution. However, it has been still mystery especially at z>2. On the basis of our ALMA 1.1 mm observations in a z ~ 3 protocluster field, it is suggested that submillimeter galaxies (SMGs) preferentially reside in the densest environment at z ~ 3. Furthermore we find a rich cluster of AGN-host SMGs at the core of the protocluster, combining with Chandra X-ray data. Our results indicate the vigorous star-formation and accelerated super massive black hole (SMBH) growth in the node of the cosmic web.

  12. Topology of large-scale structure. IV - Topology in two dimensions

    NASA Technical Reports Server (NTRS)

    Melott, Adrian L.; Cohen, Alexander P.; Hamilton, Andrew J. S.; Gott, J. Richard, III; Weinberg, David H.

    1989-01-01

    In a recent series of papers, an algorithm was developed for quantitatively measuring the topology of the large-scale structure of the universe and this algorithm was applied to numerical models and to three-dimensional observational data sets. In this paper, it is shown that topological information can be derived from a two-dimensional cross section of a density field, and analytic expressions are given for a Gaussian random field. The application of a two-dimensional numerical algorithm for measuring topology to cross sections of three-dimensional models is demonstrated.

  13. Testing the big bang: Light elements, neutrinos, dark matter and large-scale structure

    SciTech Connect

    Schramm, D.N. Fermi National Accelerator Lab., Batavia, IL )

    1991-06-01

    In this series of lectures, several experimental and observational tests of the standard cosmological model are examined. In particular, detailed discussion is presented regarding nucleosynthesis, the light element abundances and neutrino counting; the dark matter problems; and the formation of galaxies and large-scale structure. Comments will also be made on the possible implications of the recent solar neutrino experimental results for cosmology. An appendix briefly discusses the 17 keV thing'' and the cosmological and astrophysical constraints on it. 126 refs., 8 figs., 2 tabs.

  14. Contributions to the understanding of large-scale coherent structures in developing free turbulent shear flows

    NASA Technical Reports Server (NTRS)

    Liu, J. T. C.

    1986-01-01

    Advances in the mechanics of boundary layer flow are reported. The physical problems of large scale coherent structures in real, developing free turbulent shear flows, from the nonlinear aspects of hydrodynamic stability are addressed. The presence of fine grained turbulence in the problem, and its absence, lacks a small parameter. The problem is presented on the basis of conservation principles, which are the dynamics of the problem directed towards extracting the most physical information, however, it is emphasized that it must also involve approximations.

  15. FROM FINANCE TO COSMOLOGY: THE COPULA OF LARGE-SCALE STRUCTURE

    SciTech Connect

    Scherrer, Robert J.; Berlind, Andreas A.; Mao, Qingqing; McBride, Cameron K.

    2010-01-01

    Any multivariate distribution can be uniquely decomposed into marginal (one-point) distributions, and a function called the copula, which contains all of the information on correlations between the distributions. The copula provides an important new methodology for analyzing the density field in large-scale structure. We derive the empirical two-point copula for the evolved dark matter density field. We find that this empirical copula is well approximated by a Gaussian copula. We consider the possibility that the full n-point copula is also Gaussian and describe some of the consequences of this hypothesis. Future directions for investigation are discussed.

  16. Large-scale structural transitions in supercoiled DNA revealed by coarse-grained simulations

    NASA Astrophysics Data System (ADS)

    Krajina, Brad; Spakowitz, Andrew

    Topological constraints, such as DNA supercoiling, play an integral role in genomic regulation and organization in living systems. However, physical understanding of the principles that underlie DNA structure and organization at biologically-relevant length-scales remains a formidable challenge. We develop a coarse-grained simulation approach for predicting equilibrium conformations of supercoiled DNA. With this approach, we study the conformational transitions that arise due to supercoiling across the full range of supercoiling densities that are commonly explored by living systems. Simulations of ring DNA molecules with lengths up to the scale of topological domains in the E. coli chromosome (~10 kilobases) reveal large-scale structural transitions elicited by supercoiling, resulting in 3 supercoiling conformational regimes: chiral coils, extended plectonemes, and branched hyper-supercoils. These results capture the non-monotonic relationship of size versus degree of supercoiling observed in experimental sedimentation studies of supercoiled DNA, and our results provide a physical explanation of the structural transitions underlying this behavior.

  17. Large-scale structure evolution in axisymmetric, compressible free-shear layers

    SciTech Connect

    Aeschliman, D.P.; Baty, R.S.

    1997-05-01

    This paper is a description of work-in-progress. It describes Sandia`s program to study the basic fluid mechanics of large-scale mixing in unbounded, compressible, turbulent flows, specifically, the turbulent mixing of an axisymmetric compressible helium jet in a parallel, coflowing compressible air freestream. Both jet and freestream velocities are variable over a broad range, providing a wide range mixing layer Reynolds number. Although the convective Mach number, M{sub c}, range is currently limited by the present nozzle design to values of 0.6 and below, straightforward nozzle design changes would permit a wide range of convective Mach number, to well in excess of 1.0. The use of helium allows simulation of a hot jet due to the large density difference, and also aids in obtaining optical flow visualization via schlieren due to the large density gradient in the mixing layer. The work comprises a blend of analysis, experiment, and direct numerical simulation (DNS). There the authors discuss only the analytical and experimental efforts to observe and describe the evolution of the large-scale structures. The DNS work, used to compute local two-point velocity correlation data, will be discussed elsewhere.

  18. Structure of Wall-Eddies at Very Large Reynolds Number--A Large-Scale PIV Study

    NASA Astrophysics Data System (ADS)

    Hommema, S. E.; Adrian, R. J.

    2000-11-01

    The results of an experiment performed in the first 5 m of the neutral atmospheric boundary layer are presented. Large-scale PIV measurements (up to 2 m × 2 m field-of-view) were obtained in the streamwise / wall-normal plane of a very-large Reynolds number (Re_θ > 10^6, based on momentum thickness and freestream velocity), flat-plate, zero-pressure-gradient boundary layer. Measurements were obtained at the SLTEST facility in the U.S. Army's Dugway Proving Grounds. Coherent packets of ramp-like structures with downstream inclination are observed and show a remarkable resemblance to those observed in typical laboratory-scale experiments at far lower Reynolds number. The results are interpreted in terms of a vortex packet paradigm(Adrian, R.J., C.D. Meinhart, and C.D. Tomkins, Vortex organization in the outer region of the turbulent boundary layer, to appear in J. Fluid Mech., 2000.) and begin to extend the model to high Reynolds numbers of technological importance. Additional results obtained during periods of non-neutral atmospheric stability are contrasted with those of the canonical neutral boundary layer. Sample smoke visualization images (3 m × 15 m field-of-view) are available online from the author.

  19. An Analysis of Rich Cluster Redshift Survey Data for Large Scale Structure Studies

    NASA Astrophysics Data System (ADS)

    Slinglend, K.; Batuski, D.; Haase, S.; Hill, J.

    1994-12-01

    The results from the COBE satellite show the existence of structure on scales on the order of 10% or more of the horizon scale of the universe. Rich clusters of galaxies from Abell's catalog show evidence of structure on scales of 100 Mpc and may hold the promise of confirming structure on the scale of the COBE result. However, many Abell clusters have zero or only one measured redshift, so present knowledge of their three dimensional distribution has quite large uncertainties. The shortage of measured redshifts for these clusters may also mask a problem of projection effects corrupting the membership counts for the clusters. Our approach in this effort has been to use the MX multifiber spectrometer on the Steward 2.3m to measure redshifts of at least ten galaxies in each of 80 Abell cluster fields with richness class R>= 1 and mag10 <= 16.8 (estimated z<= 0.12) and zero or one measured redshifts. This work will result in a deeper, more complete (and reliable) sample of positions of rich clusters. Our primary intent for the sample is for two-point correlation and other studies of the large scale structure traced by these clusters in an effort to constrain theoretical models for structure formation. We are also obtaining enough redshifts per cluster so that a much better sample of reliable cluster velocity dispersions will be available for other studies of cluster properties. To date, we have collected such data for 64 clusters, and for most of them, we have seven or more cluster members with redshifts, allowing for reliable velocity dispersion calculations. Velocity histograms and stripe density plots for several interesting cluster fields are presented, along with summary tables of cluster redshift results. Also, with 10 or more redshifts in most of our cluster fields (30({') } square, just about an `Abell diameter' at z ~ 0.1) we have investigated the extent of projection effects within the Abell catalog in an effort to quantify and understand how this may effect

  20. Observed large-scale structures and diabatic heating and drying profiles during TWP-ICE

    SciTech Connect

    Xie, Shaocheng; Hume, Timothy; Jakob, Christian; Klein, Stephen A.; McCoy, Renata B.; Zhang, Minghua

    2010-01-01

    This study documents the characteristics of the large-scale structures and diabatic heating and drying profiles observed during the Tropical Warm Pool–International Cloud Experiment (TWP-ICE), which was conducted in January–February 2006 in Darwin during the northern Australian monsoon season. The examined profiles exhibit significant variations between four distinct synoptic regimes that were observed during the experiment. The active monsoon period is characterized by strong upward motion and large advective cooling and moistening throughout the entire troposphere, while the suppressed and clear periods are dominated by moderate midlevel subsidence and significant low- to midlevel drying through horizontal advection. The midlevel subsidence and horizontal dry advection are largely responsible for the dry midtroposphere observed during the suppressed period and limit the growth of clouds to low levels. During the break period, upward motion and advective cooling and moistening located primarily at midlevels dominate together with weak advective warming and drying (mainly from horizontal advection) at low levels. The variations of the diabatic heating and drying profiles with the different regimes are closely associated with differences in the large-scale structures, cloud types, and rainfall rates between the regimes. Strong diabatic heating and drying are seen throughout the troposphere during the active monsoon period while they are moderate and only occur above 700 hPa during the break period. The diabatic heating and drying tend to have their maxima at low levels during the suppressed periods. Furthermore, the diurnal variations of these structures between monsoon systems, continental/coastal, and tropical inland-initiated convective systems are also examined.

  1. Observed large-scale structures and diabatic heating and drying profiles during TWP-ICE

    DOE PAGES

    Xie, Shaocheng; Hume, Timothy; Jakob, Christian; Klein, Stephen A.; McCoy, Renata B.; Zhang, Minghua

    2010-01-01

    This study documents the characteristics of the large-scale structures and diabatic heating and drying profiles observed during the Tropical Warm Pool–International Cloud Experiment (TWP-ICE), which was conducted in January–February 2006 in Darwin during the northern Australian monsoon season. The examined profiles exhibit significant variations between four distinct synoptic regimes that were observed during the experiment. The active monsoon period is characterized by strong upward motion and large advective cooling and moistening throughout the entire troposphere, while the suppressed and clear periods are dominated by moderate midlevel subsidence and significant low- to midlevel drying through horizontal advection. The midlevel subsidence andmore » horizontal dry advection are largely responsible for the dry midtroposphere observed during the suppressed period and limit the growth of clouds to low levels. During the break period, upward motion and advective cooling and moistening located primarily at midlevels dominate together with weak advective warming and drying (mainly from horizontal advection) at low levels. The variations of the diabatic heating and drying profiles with the different regimes are closely associated with differences in the large-scale structures, cloud types, and rainfall rates between the regimes. Strong diabatic heating and drying are seen throughout the troposphere during the active monsoon period while they are moderate and only occur above 700 hPa during the break period. The diabatic heating and drying tend to have their maxima at low levels during the suppressed periods. Furthermore, the diurnal variations of these structures between monsoon systems, continental/coastal, and tropical inland-initiated convective systems are also examined.« less

  2. Testing Early Universe Theories Using Large Scale Structure: Moving Beyond Phenomenology

    NASA Astrophysics Data System (ADS)

    Shandera, Sarah

    Current observational evidence favors inflation, a very early era of accelerated expansion, as the origin of the Large Scale Structure of the universe. Although compelling, this evidence comes mainly from the amplitude of primordial perturbations as a function of scale. More detailed and definitive information is contained in higher order statistics, collectively labelled `non- Gaussianity', which is of unparalleled importance to theorists who study inflation or its competitors. Analogously to collider physics studies, non-Gaussianity probes the interactions of the fields active in the very early universe and so will allow us to uncover the particle physics identity of the components that give rise to the very early pattern of density fluctuations. Primordial non-Gaussianity generates many non-trivial signals in Large Scale Structure, thanks largely to the non-linear evolution of the primordial perturbations. The distribution of objects in mass and redshift and their spatial clustering together contain information about the complete set of statistics of the primordial fluctuations. Predictions for those observables rely on numerical simulations of the dark matter evolution, which so far have been carried out almost entirely for a simple phenomenological model of primordial non-Gaussianity. However, it is now clear that interesting constraints or detection of non-Gaussianity are possible with next generation surveys: to use this data to its fullest extent we must understand clearly what those constraints will mean for fundamental theories of the origin of the perturbations. We propose to make a direct connection between theoretical ideas for the primordial fluctuations, including non-Gaussianity, and predictions from those theories for details of the Large Scale Structure of the Universe. Our goal is to find a prescription for setting up initial conditions for N-body simulations that match as closely as possible the predictions from a variety of particle physics

  3. Efficient preconditioning of the electronic structure problem in large scale ab initio molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Schiffmann, Florian; VandeVondele, Joost

    2015-06-01

    We present an improved preconditioning scheme for electronic structure calculations based on the orbital transformation method. First, a preconditioner is developed which includes information from the full Kohn-Sham matrix but avoids computationally demanding diagonalisation steps in its construction. This reduces the computational cost of its construction, eliminating a bottleneck in large scale simulations, while maintaining rapid convergence. In addition, a modified form of Hotelling's iterative inversion is introduced to replace the exact inversion of the preconditioner matrix. This method is highly effective during molecular dynamics (MD), as the solution obtained in earlier MD steps is a suitable initial guess. Filtering small elements during sparse matrix multiplication leads to linear scaling inversion, while retaining robustness, already for relatively small systems. For system sizes ranging from a few hundred to a few thousand atoms, which are typical for many practical applications, the improvements to the algorithm lead to a 2-5 fold speedup per MD step.

  4. Single-field consistency relations of large scale structure part III: test of the equivalence principle

    SciTech Connect

    Creminelli, Paolo; Gleyzes, Jérôme; Vernizzi, Filippo; Hui, Lam; Simonović, Marko E-mail: jerome.gleyzes@cea.fr E-mail: msimonov@sissa.it

    2014-06-01

    The recently derived consistency relations for Large Scale Structure do not hold if the Equivalence Principle (EP) is violated. We show it explicitly in a toy model with two fluids, one of which is coupled to a fifth force. We explore the constraints that galaxy surveys can set on EP violation looking at the squeezed limit of the 3-point function involving two populations of objects. We find that one can explore EP violations of order 10{sup −3}÷10{sup −4} on cosmological scales. Chameleon models are already very constrained by the requirement of screening within the Solar System and only a very tiny region of the parameter space can be explored with this method. We show that no violation of the consistency relations is expected in Galileon models.

  5. Efficient preconditioning of the electronic structure problem in large scale ab initio molecular dynamics simulations

    SciTech Connect

    Schiffmann, Florian; VandeVondele, Joost

    2015-06-28

    We present an improved preconditioning scheme for electronic structure calculations based on the orbital transformation method. First, a preconditioner is developed which includes information from the full Kohn-Sham matrix but avoids computationally demanding diagonalisation steps in its construction. This reduces the computational cost of its construction, eliminating a bottleneck in large scale simulations, while maintaining rapid convergence. In addition, a modified form of Hotelling’s iterative inversion is introduced to replace the exact inversion of the preconditioner matrix. This method is highly effective during molecular dynamics (MD), as the solution obtained in earlier MD steps is a suitable initial guess. Filtering small elements during sparse matrix multiplication leads to linear scaling inversion, while retaining robustness, already for relatively small systems. For system sizes ranging from a few hundred to a few thousand atoms, which are typical for many practical applications, the improvements to the algorithm lead to a 2-5 fold speedup per MD step.

  6. Statistical Analysis of Large Scale Structure by the Discrete Wavelet Transform

    NASA Astrophysics Data System (ADS)

    Pando, Jesus

    1997-10-01

    The discrete wavelet transform (DWT) is developed as a general statistical tool for the study of large scale structures (LSS) in astrophysics. The DWT is used in all aspects of structure identification including cluster analysis, spectrum and two-point correlation studies, scale-scale correlation analysis and to measure deviations from Gaussian behavior. The techniques developed are demonstrated on 'academic' signals, on simulated models of the Lymanα (Lyα) forests, and on observational data of the Lyα forests. This technique can detect clustering in the Ly-α clouds where traditional techniques such as the two-point correlation function have failed. The position and strength of these clusters in both real and simulated data is determined and it is shown that clusters exist on scales as large as at least 20 h-1 Mpc at significance levels of 2-4 σ. Furthermore, it is found that the strength distribution of the clusters can be used to distinguish between real data and simulated samples even where other traditional methods have failed to detect differences. Second, a method for measuring the power spectrum of a density field using the DWT is developed. All common features determined by the usual Fourier power spectrum can be calculated by the DWT. These features, such as the index of a power law or typical scales, can be detected even when the samples are geometrically complex, the samples are incomplete, or the mean density on larger scales is not known (the infrared uncertainty). Using this method the spectra of Ly-α forests in both simulated and real samples is calculated. Third, a method for measuring hierarchical clustering is introduced. Because hierarchical evolution is characterized by a set of rules of how larger dark matter halos are formed by the merging of smaller halos, scale-scale correlations of the density field should be one of the most sensitive quantities in determining the merging history. We show that these correlations can be completely

  7. Symbolic and Graphical Representation Scheme for Sensors Deployed in Large-Scale Structures

    PubMed Central

    Park, Hyo Seon; Shin, Yunah; Choi, Se Woon; Kim, Yousok

    2013-01-01

    As wireless sensor network (WSN)-based structural health monitoring (SHM) systems are increasingly being employed in civil infrastructures and building structures, the management of large numbers of sensing devices and the large amount of data acquired from WSNs will become increasingly difficult unless systematic expressions of the sensor network are provided. This study introduces a practical WSN for SHM that consists of sensors, wireless sensor nodes, repeater nodes, master nodes, and monitoring servers. This study also proposes a symbolic and graphical representation scheme (SGRS) for this system, in which the communication relationships and respective location information of the distributed sensing components are expressed in a concise manner. The SGRS was applied to the proposed WSN, which is employed in an actual large-scale irregular structure in which three types of sensors (75 vibrating wire strain gauges, 10 inclinometers, and three laser displacement sensors) and customized wireless sensor nodes are installed. The application results demonstrate that prompt identification of sensing units and effective management of the distributed sensor network can be realized from the SGRS. The results also demonstrate the superiority of the SGRS over conventional expression methods in which a box diagram or tree diagram representing the ID of sensors and data loggers is used. PMID:23912426

  8. Symbolic and graphical representation scheme for sensors deployed in large-scale structures.

    PubMed

    Park, Hyo Seon; Shin, Yunah; Choi, Se Woon; Kim, Yousok

    2013-07-31

    As wireless sensor network (WSN)-based structural health monitoring (SHM) systems are increasingly being employed in civil infrastructures and building structures, the management of large numbers of sensing devices and the large amount of data acquired from WSNs will become increasingly difficult unless systematic expressions of the sensor network are provided. This study introduces a practical WSN for SHM that consists of sensors, wireless sensor nodes, repeater nodes, master nodes, and monitoring servers. This study also proposes a symbolic and graphical representation scheme (SGRS) for this system, in which the communication relationships and respective location information of the distributed sensing components are expressed in a concise manner. The SGRS was applied to the proposed WSN, which is employed in an actual large-scale irregular structure in which three types of sensors (75 vibrating wire strain gauges, 10 inclinometers, and three laser displacement sensors) and customized wireless sensor nodes are installed. The application results demonstrate that prompt identification of sensing units and effective management of the distributed sensor network can be realized from the SGRS. The results also demonstrate the superiority of the SGRS over conventional expression methods in which a box diagram or tree diagram representing the ID of sensors and data loggers is used.

  9. Large-scale internal structure in volcanogenic breakout flood deposits: Extensive GPR survey on volcaniclastic deposits

    NASA Astrophysics Data System (ADS)

    Kataoka, K.; Gomez, C. A.

    2012-12-01

    Large-scale outburst floods from volcanic lakes such as caldera lakes or volcanically dammed river-valleys tend to be voluminous with total discharge of > 1-10s km3 and peak discharge of >10000s to 100000s m3 s-1. Such a large flood can travel long distance and leave sediments and bedforms/landforms extensively with large-scale internal structures, which are difficult to assess from single local sites. Moreover, the sediments and bedforms/landforms are sometimes untraceable, and outcrop information obtained by classical geological and geomorphological field surveys is limited to the dissected/terraced parts of fan body, road cuts and/or large quarries. Therefore, GPR (Ground Penetrating Radar), using the properties of electromagnetic waves' propagation through media, seems best adapted for the appraisal of large-scale subsurface structures. Recently, studies on GPR applications to volcanic deposits have successfully captured images of lava flows and volcaniclastic deposits and proved the usefulness of this method even onto the volcanic areas which often encompass complicated stratigraphy and structures with variable material, grainsize, and ferromagnetic content. Using GPR, the present study aims to understand the large-scale internal structures of volcanogenic flood deposits. The survey was carried out over two volcanogenic flood fan (or apron) sediments in northeast Japan, at Numazawa and Towada volcanoes. The 5 ka Numazawa flood deposits in the Tadami river catchment that has been emplaced by a breakout flood from ignimbrite-dammed valley leaving pumiceous gravelly sediments with meter-sized boulders in the flow path. At Towada volcano, a comparable flood event originating from a breach in the caldera rim emplaced the 13-15 ka Sanbongi fan deposits in the Oirase river valley, which is characterized by a bouldery fan deposits. The GPR data was collected following 200 to 500 m long lateral and longitudinal transects, which were captured using a GPR Pulse

  10. The topology of large-scale structure. VI - Slices of the universe

    NASA Technical Reports Server (NTRS)

    Park, Changbom; Gott, J. R., III; Melott, Adrian L.; Karachentsev, I. D.

    1992-01-01

    Results of an investigation of the topology of large-scale structure in two observed slices of the universe are presented. Both slices pass through the Coma cluster and their depths are 100 and 230/h Mpc. The present topology study shows that the largest void in the CfA slice is divided into two smaller voids by a statistically significant line of galaxies. The topology of toy models like the white noise and bubble models is shown to be inconsistent with that of the observed slices. A large N-body simulation was made of the biased cloud dark matter model and the slices are simulated by matching them in selection functions and boundary conditions. The genus curves for these simulated slices are spongelike and have a small shift in the direction of a meatball topology like those of observed slices.

  11. The topology of large-scale structure. VI - Slices of the universe

    NASA Astrophysics Data System (ADS)

    Park, Changbom; Gott, J. R., III; Melott, Adrian L.; Karachentsev, I. D.

    1992-03-01

    Results of an investigation of the topology of large-scale structure in two observed slices of the universe are presented. Both slices pass through the Coma cluster and their depths are 100 and 230/h Mpc. The present topology study shows that the largest void in the CfA slice is divided into two smaller voids by a statistically significant line of galaxies. The topology of toy models like the white noise and bubble models is shown to be inconsistent with that of the observed slices. A large N-body simulation was made of the biased cloud dark matter model and the slices are simulated by matching them in selection functions and boundary conditions. The genus curves for these simulated slices are spongelike and have a small shift in the direction of a meatball topology like those of observed slices.

  12. Measuring the matter energy density and Hubble parameter from large scale structure

    SciTech Connect

    Lee, Seokcheon

    2014-02-01

    We investigate the method to measure both the present value of the matter energy density contrast and the Hubble parameter directly from the measurement of the linear growth rate which is obtained from the large scale structure of the Universe. From this method, one can obtain the value of the nuisance cosmological parameter Ω{sub m0} (the present value of the matter energy density contrast) within 3% error if the growth rate measurement can be reached z > 3.5. One can also investigate the evolution of the Hubble parameter without any prior on the value of H{sub 0} (the current value of the Hubble parameter). Especially, estimating the Hubble parameter are insensitive to the errors on the measurement of the normalized growth rate fσ{sub 8}. However, this method requires the high z (z > 3.5) measurement of the growth rate in order to get the less than 5% errors on the measurements of H(z) at z ≤ 1.2 with the redshift bin Δz = 0.2. Thus, this will be suitable for the next generation large scale structure galaxy surveys like WFMOS and LSST.

  13. Non-linear description of massive neutrinos in the framework of large-scale structure formation

    NASA Astrophysics Data System (ADS)

    Dupuy, Hélène

    2016-10-01

    There is now no doubt that neutrinos are massive particles fully involved in the non-linear growth of the large-scale structure of the universe. A problem is that they are particularly difficult to include in cosmological models because the equations describing their behavior in the non-linear regime are cumbersome and difficult to handle. In this manuscript I present a new method allowing to deal with massive neutrinos in a very simple way, based on basic conservation laws. This method is still valid in the non-linear regime. The key idea is to describe neutrinos as a collection of single-flow fluids instead of seeing them as a single hot multi-flow fluid. In this framework, the time evolution of neutrinos is encoded in fluid equations describing macroscopic fields, just as what is done for cold dark matter. Although valid up to shell-crossing only, this approach is a further step towards a fully non-linear treatment of the dynamical evolution of neutrinos in the framework of large-scale structure growth.

  14. CMB lensing bispectrum from nonlinear growth of the large scale structure

    NASA Astrophysics Data System (ADS)

    Namikawa, Toshiya

    2016-06-01

    We discuss detectability of the nonlinear growth of the large-scale structure in the cosmic microwave background (CMB) lensing. The lensing signals involved in the CMB fluctuations have been measured from multiple CMB experiments, such as Atacama Cosmology Telescope (ACT), Planck, POLARBEAR, and South Pole Telescope (SPT). The reconstructed CMB lensing signals are useful to constrain cosmology via their angular power spectrum, while detectability and cosmological application of their bispectrum induced by the nonlinear evolution are not well studied. Extending the analytic estimate of the galaxy lensing bispectrum presented by Takada and Jain (2004) to the CMB case, we show that even near term CMB experiments such as Advanced ACT, Simons Array and SPT3G could detect the CMB lensing bispectrum induced by the nonlinear growth of the large-scale structure. In the case of the CMB Stage-IV, we find that the lensing bispectrum is detectable at ≳50 σ statistical significance. This precisely measured lensing bispectrum has rich cosmological information, and could be used to constrain cosmology, e.g., the sum of the neutrino masses and the dark-energy properties.

  15. A simple model to relate ionogram signatures to large-scale wave structure

    NASA Astrophysics Data System (ADS)

    Tsunoda, Roland T.

    2012-09-01

    The development of plasma structure in the nighttime equatorial F region, known as equatorial spread F (ESF), appears to be controlled by the preceding presence of large-scale wave structure (LSWS). To understand this process, knowledge of the properties of LSWS is crucial. Information about LSWS appears to reside in two ionogram signatures, multi-reflected echoes (MREs) and the so-called “satellite” traces (STs). However, how LSWS is related to MREs and STs is not yet clear. To gain insight, a tilted, linear reflector, modulated by LSWS, is described and shown to be capable of explaining even the most puzzling forms of MREs and STs. With this kind of model, ionogram signatures can be used to infer the nature of LSWS.

  16. Seismic imaging of structural heterogeneity in Earth's mantle: evidence for large-scale mantle flow.

    PubMed

    Ritsema, J; Van Heijst, H J

    2000-01-01

    Systematic analyses of earthquake-generated seismic waves have resulted in models of three-dimensional elastic wavespeed structure in Earth's mantle. This paper describes the development and the dominant characteristics of one of the most recently developed models. This model is based on seismic wave travel times and wave shapes from over 100,000 ground motion recordings of earthquakes that occurred between 1980 and 1998. It shows signatures of plate tectonic processes to a depth of about 1,200 km in the mantle, and it demonstrates the presence of large-scale structure throughout the lower 2,000 km of the mantle. Seismological analyses make it increasingly more convincing that geologic processes shaping Earth's surface are intimately linked to physical processes in the deep mantle.

  17. Production of large-scale, freestanding vanadium pentoxide nanobelt porous structures

    NASA Astrophysics Data System (ADS)

    Yun, Yong Ju; Kim, Byung Hoon; Hong, Won G.; Kim, Chang Hee; Kim, Yark Yeon; Jeong, Eun-Ju; Jang, Won Ick; Yu, Han Young

    2012-02-01

    Large-scale, freestanding, porous structures of vanadium pentoxide nanobelts (VPNs) were successfully prepared using the template-free freeze-drying method. The porous and multi-layered VPN macrostructures are composed of randomly oriented long nanobelts (over 100 μm) and their side length can be controlled up to a few tens of centimetres. Also, the bulk density and surface area of these macrostructures are 3-5 mg cm-3 and 40-80 m2 g-1, respectively, which are similar to those of the excellent adsorbents. In addition, the removal efficiency measurements of ammonia molecules revealed that the VPN porous structures can adsorb the ammonia molecules with the combinations of van der Waals forces and strong chemical bonding by functional groups on the VPN surface.

  18. Production of large-scale, freestanding vanadium pentoxide nanobelt porous structures.

    PubMed

    Yun, Yong Ju; Kim, Byung Hoon; Hong, Won G; Kim, Chang Hee; Kim, Yark Yeon; Jeong, Eun-ju; Jang, Won Ick; Yu, Han Young

    2012-03-01

    Large-scale, freestanding, porous structures of vanadium pentoxide nanobelts (VPNs) were successfully prepared using the template-free freeze-drying method. The porous and multi-layered VPN macrostructures are composed of randomly oriented long nanobelts (over 100 μm) and their side length can be controlled up to a few tens of centimetres. Also, the bulk density and surface area of these macrostructures are 3-5 mg cm(-3) and 40-80 m(2) g(-1), respectively, which are similar to those of the excellent adsorbents. In addition, the removal efficiency measurements of ammonia molecules revealed that the VPN porous structures can adsorb the ammonia molecules with the combinations of van der Waals forces and strong chemical bonding by functional groups on the VPN surface.

  19. Vibration suppression for large scale adaptive truss structures using direct output feedback control

    NASA Technical Reports Server (NTRS)

    Lu, Lyan-Ywan; Utku, Senol; Wada, Ben K.

    1993-01-01

    In this article, the vibration control of adaptive truss structures, where the control actuation is provided by length adjustable active members, is formulated as a direct output feedback control problem. A control method named Model Truncated Output Feedback (MTOF) is presented. The method allows the control feedback gain to be determined in a decoupled and truncated modal space in which only the critical vibration modes are retained. The on-board computation required by MTOF is minimal; thus, the method is favorable for the applications of vibration control of large scale structures. The truncation of the modal space inevitably introduces spillover effect during the control process. In this article, the effect is quantified in terms of active member locations, and it is shown that the optimal placement of active members, which minimizes the spillover effect (and thus, maximizes the control performance) can be sought. The problem of optimally selecting the locations of active members is also treated.

  20. Molecular clouds and the large-scale structure of the galaxy

    NASA Technical Reports Server (NTRS)

    Thaddeus, Patrick; Stacy, J. Gregory

    1990-01-01

    The application of molecular radio astronomy to the study of the large-scale structure of the Galaxy is reviewed and the distribution and characteristic properties of the Galactic population of Giant Molecular Clouds (GMCs), derived primarily from analysis of the Columbia CO survey, and their relation to tracers of Population 1 and major spiral features are described. The properties of the local molecular interstellar gas are summarized. The CO observing programs currently underway with the Center for Astrophysics 1.2 m radio telescope are described, with an emphasis on projects relevant to future comparison with high-energy gamma-ray observations. Several areas are discussed in which high-energy gamma-ray observations by the EGRET (Energetic Gamma-Ray Experiment Telescope) experiment aboard the Gamma Ray Observatory will directly complement radio studies of the Milky Way, with the prospect of significant progress on fundamental issues related to the structure and content of the Galaxy.

  1. On a digital wireless impact-monitoring network for large-scale composite structures

    NASA Astrophysics Data System (ADS)

    Yuan, Shenfang; Mei, Hanfei; Qiu, Lei; Ren, Yuanqiang

    2014-08-01

    Impact, which may occur during manufacture, service or maintenance, is one of the major concerns to be monitored throughout the lifetime of aircraft composite structures. Aiming at monitoring impacts online while minimizing the weight added to the aircraft to meet the strict limitations of aerospace engineering, this paper puts forward a new digital wireless network based on miniaturized wireless digital impact-monitoring nodes developed for large-scale composite structures. In addition to investigations on the design methods of the network architecture, time synchronization and implementation method, a conflict resolution method based on the feature parameters of digital sequences is first presented to address impact localization conflicts when several nodes are arranged close together. To verify the feasibility and stability of the wireless network, experiments are performed on a complex aircraft composite wing box and an unmanned aerial vehicle (UAV) composite wing. Experimental results show the successful design of the presented network.

  2. Altered functional-structural coupling of large-scale brain networks in idiopathic generalized epilepsy.

    PubMed

    Zhang, Zhiqiang; Liao, Wei; Chen, Huafu; Mantini, Dante; Ding, Ju-Rong; Xu, Qiang; Wang, Zhengge; Yuan, Cuiping; Chen, Guanghui; Jiao, Qing; Lu, Guangming

    2011-10-01

    The human brain is a large-scale integrated network in the functional and structural domain. Graph theoretical analysis provides a novel framework for analysing such complex networks. While previous neuroimaging studies have uncovered abnormalities in several specific brain networks in patients with idiopathic generalized epilepsy characterized by tonic-clonic seizures, little is known about changes in whole-brain functional and structural connectivity networks. Regarding functional and structural connectivity, networks are intimately related and share common small-world topological features. We predict that patients with idiopathic generalized epilepsy would exhibit a decoupling between functional and structural networks. In this study, 26 patients with idiopathic generalized epilepsy characterized by tonic-clonic seizures and 26 age- and sex-matched healthy controls were recruited. Resting-state functional magnetic resonance imaging signal correlations and diffusion tensor image tractography were used to generate functional and structural connectivity networks. Graph theoretical analysis revealed that the patients lost optimal topological organization in both functional and structural connectivity networks. Moreover, the patients showed significant increases in nodal topological characteristics in several cortical and subcortical regions, including mesial frontal cortex, putamen, thalamus and amygdala relative to controls, supporting the hypothesis that regions playing important roles in the pathogenesis of epilepsy may display abnormal hub properties in network analysis. Relative to controls, patients showed further decreases in nodal topological characteristics in areas of the default mode network, such as the posterior cingulate gyrus and inferior temporal gyrus. Most importantly, the degree of coupling between functional and structural connectivity networks was decreased, and exhibited a negative correlation with epilepsy duration in patients. Our findings

  3. Predictions of a non-Gaussian model for large scale structure

    SciTech Connect

    Fan, Z.H.; Bardeen, J.M.

    1992-06-26

    A modified CDM model for the origin of structure in the universe based on an inflation model with two interacting scalar fields, is analyzed to make predictions for the statistical properties of the density and velocity fields and the microwave background anisotropy. The initial gauge-invariant potential [zeta] which is defined as [zeta] = [delta][rho]/([rho] + p) + 3[var phi], where [var phi] is the curvature perturbation amplitude and p is the pressure, is the sum of a Gaussian field [phi][sub 1], and the square of a Gaussian field [phi][sub 2]. A Harrison-Zel'dovich scale-invariant power spectrum is assumed for [phi][sub 1]; and a log-normal 'peak' power spectrum for [phi][sub 2]. The location and the width of the peak are described by parameters k[sub c] and a. respectively. The model is motivated to some extent by inflation models with two interacting scalar fields, but is mainly interesting as an example of a model whose statistical properties change with scale. On small scales, it is almost identical to a standard scale-invariant Gaussian CDM model. On scales near the location of the peak of the non-Gaussian field, the distributions have long tails in high positive values of the density and velocity fields. Thus, it is easier to get large-scale streaming velocities than the standard CDM model. The quadrupole amplitude of fluctuations of the cosmic microwave background radiation and the rms variation of the temperature field smoothed with a 10[degree] FWHM Gaussian are calculated; a reasonable agreement is found with the new COBE results.

  4. Experimental Investigation of Large-Scale Flow Structures in Turbulent Mixed Convection

    NASA Astrophysics Data System (ADS)

    Koerner, Max; Resagk, Christian; Thess, Andre

    2014-11-01

    We report on experimental investigations of the temporal and spatial behavior of large-scale flow structures (LSC) in turbulent mixed convection. Using a reduced scale model room with a passenger cabin based geometry allows a global view on the LSCs, which are mainly responsible for thermal comfort and air quality within rooms. Moreover, the usage of pressurized working gases like air or sulfur hexafluoride (SF6) enables experimental investigations within broad ranges of the Reynolds number Re and Rayleigh number Ra. Thus, it is also possible to achieve realistic values of the dimensionless numbers allowing direct conclusions to be drawn about the LSCs in rooms similar to passenger cabins. The LSCs are determined by measurements of the 2D velocity field using a 2D2C particle image velocimetry system. In order to characterize three-dimensionally evolved flow structures, the measurement plane can be moved throughout the depth of the model room. We found very complex LSCs ranging from two-dimensional to three-dimensional structures and from one-roll systems over simple two-roll ones to chaotic behavior of the flow. The formation the LSCs has a strong dependency on the relation between Re and Ra and they often show distinct coherent oscillations. The authors gratefully acknowledge the DFG (Grant No. TH497-32-1) for financial support.

  5. Novel computational strategies for solution of large-scale structural problems

    NASA Technical Reports Server (NTRS)

    Noor, Ahmed K.; Peters, Jeanne M.

    1990-01-01

    Novel computational strategies are presented for the analysis of large and complex structures. The strategies are based on generating the response of the complex structure using large perturbations from that of a simpler model, associated with a simpler structure (or a simpler mathematical/discrete model of the original structure). Numerical examples are presented to demonstrate the effectiveness of the strategies developed.

  6. The one-loop matter bispectrum in the Effective Field Theory of Large Scale Structures

    DOE PAGES

    Angulo, Raul E.; Foreman, Simon; Schmittfull, Marcel; Senatore, Leonardo

    2015-10-14

    With this study, given the importance of future large scale structure surveys for delivering new cosmological information, it is crucial to reliably predict their observables. The Effective Field Theory of Large Scale Structures (EFTofLSS) provides a manifestly convergent perturbative scheme to compute the clustering of dark matter in the weakly nonlinear regime in an expansion in k/kNL, where k is the wavenumber of interest and kNL is the wavenumber associated to the nonlinear scale. It has been recently shown that the EFTofLSS matches to 1% level the dark matter power spectrum at redshift zero up to k ≃ 0.3 hmore » Mpc–1 and k ≃ 0.6 h Mpc–1 at one and two loops respectively, using only one counterterm that is fit to data. Similar results have been obtained for the momentum power spectrum at one loop. This is a remarkable improvement with respect to former analytical techniques. Here we study the prediction for the equal-time dark matter bispectrum at one loop. We find that at this order it is sufficient to consider the same counterterm that was measured in the power spectrum. Without any remaining free parameter, and in a cosmology for which kNL is smaller than in the previously considered cases (σ8=0.9), we find that the prediction from the EFTofLSS agrees very well with N-body simulations up to k ≃ 0.25 h Mpc–1, given the accuracy of the measurements, which is of order a few percent at the highest k's of interest. While the fit is very good on average up to k ≃ 0.25 h Mpc–1, the fit performs slightly worse on equilateral configurations, in agreement with expectations that for a given maximum k, equilateral triangles are the most nonlinear.« less

  7. Symposium on Parallel Computational Methods for Large-scale Structural Analysis and Design, 2nd, Norfolk, VA, US

    NASA Technical Reports Server (NTRS)

    Storaasli, Olaf O. (Editor); Housner, Jerrold M. (Editor)

    1993-01-01

    Computing speed is leaping forward by several orders of magnitude each decade. Engineers and scientists gathered at a NASA Langley symposium to discuss these exciting trends as they apply to parallel computational methods for large-scale structural analysis and design. Among the topics discussed were: large-scale static analysis; dynamic, transient, and thermal analysis; domain decomposition (substructuring); and nonlinear and numerical methods.

  8. Particle-nested inverse opal structures as hierarchically structured large-scale membranes with tunable separation properties.

    PubMed

    Rhee, Do Kyung; Jung, Bokyung; Kim, Young Hun; Yeo, Seon Ju; Choi, Se-Jin; Rauf, Ali; Han, Sungsoo; Yi, Gi-Ra; Lee, Daeyeon; Yoo, Pil J

    2014-07-01

    A novel multiscale porous architecture where an individual particle is nested inside a hollow chamber of inverse-opal (IO) frame is created using a large scale self-assembly of core-shell structured colloidal particles and subsequent selective removal of the outer shells of the colloids. Since the nested particle is smaller than the size of individual IO chamber, the interconnected nanochannels are spontaneously formed within the structured frame. The size of internal nanochannels is readily tuned to have high permeability and size-selective separation capability, which is successfully tested for nanoparticle separation. PMID:24937683

  9. Automatic Generation of Connectivity for Large-Scale Neuronal Network Models through Structural Plasticity.

    PubMed

    Diaz-Pier, Sandra; Naveau, Mikaël; Butz-Ostendorf, Markus; Morrison, Abigail

    2016-01-01

    With the emergence of new high performance computation technology in the last decade, the simulation of large scale neural networks which are able to reproduce the behavior and structure of the brain has finally become an achievable target of neuroscience. Due to the number of synaptic connections between neurons and the complexity of biological networks, most contemporary models have manually defined or static connectivity. However, it is expected that modeling the dynamic generation and deletion of the links among neurons, locally and between different regions of the brain, is crucial to unravel important mechanisms associated with learning, memory and healing. Moreover, for many neural circuits that could potentially be modeled, activity data is more readily and reliably available than connectivity data. Thus, a framework that enables networks to wire themselves on the basis of specified activity targets can be of great value in specifying network models where connectivity data is incomplete or has large error margins. To address these issues, in the present work we present an implementation of a model of structural plasticity in the neural network simulator NEST. In this model, synapses consist of two parts, a pre- and a post-synaptic element. Synapses are created and deleted during the execution of the simulation following local homeostatic rules until a mean level of electrical activity is reached in the network. We assess the scalability of the implementation in order to evaluate its potential usage in the self generation of connectivity of large scale networks. We show and discuss the results of simulations on simple two population networks and more complex models of the cortical microcircuit involving 8 populations and 4 layers using the new framework. PMID:27303272

  10. Automatic Generation of Connectivity for Large-Scale Neuronal Network Models through Structural Plasticity

    PubMed Central

    Diaz-Pier, Sandra; Naveau, Mikaël; Butz-Ostendorf, Markus; Morrison, Abigail

    2016-01-01

    With the emergence of new high performance computation technology in the last decade, the simulation of large scale neural networks which are able to reproduce the behavior and structure of the brain has finally become an achievable target of neuroscience. Due to the number of synaptic connections between neurons and the complexity of biological networks, most contemporary models have manually defined or static connectivity. However, it is expected that modeling the dynamic generation and deletion of the links among neurons, locally and between different regions of the brain, is crucial to unravel important mechanisms associated with learning, memory and healing. Moreover, for many neural circuits that could potentially be modeled, activity data is more readily and reliably available than connectivity data. Thus, a framework that enables networks to wire themselves on the basis of specified activity targets can be of great value in specifying network models where connectivity data is incomplete or has large error margins. To address these issues, in the present work we present an implementation of a model of structural plasticity in the neural network simulator NEST. In this model, synapses consist of two parts, a pre- and a post-synaptic element. Synapses are created and deleted during the execution of the simulation following local homeostatic rules until a mean level of electrical activity is reached in the network. We assess the scalability of the implementation in order to evaluate its potential usage in the self generation of connectivity of large scale networks. We show and discuss the results of simulations on simple two population networks and more complex models of the cortical microcircuit involving 8 populations and 4 layers using the new framework. PMID:27303272

  11. Large-scale structural analysis: The structural analyst, the CSM Testbed and the NAS System

    NASA Technical Reports Server (NTRS)

    Knight, Norman F., Jr.; Mccleary, Susan L.; Macy, Steven C.; Aminpour, Mohammad A.

    1989-01-01

    The Computational Structural Mechanics (CSM) activity is developing advanced structural analysis and computational methods that exploit high-performance computers. Methods are developed in the framework of the CSM testbed software system and applied to representative complex structural analysis problems from the aerospace industry. An overview of the CSM testbed methods development environment is presented and some numerical methods developed on a CRAY-2 are described. Selected application studies performed on the NAS CRAY-2 are also summarized.

  12. The impact of large scale ionospheric structure on radio occultation retrievals

    NASA Astrophysics Data System (ADS)

    Mannucci, A. J.; Ao, C. O.; Pi, X.; Iijima, B. A.

    2011-12-01

    We study the impact of large-scale ionospheric structure on the accuracy of radio occultation (RO) retrievals. We use a climatological model of the ionosphere as well as an ionospheric data assimilation model to compare quiet and geomagnetically disturbed conditions. The presence of ionospheric electron density gradients during disturbed conditions increases the physical separation of the two GPS frequencies as the GPS signal traverses the ionosphere and atmosphere. We analyze this effect in detail using ray-tracing and a full geophysical retrieval system. During quiet conditions, our results are similar to previously published studies. The impact of a major ionospheric storm is analyzed using data from the 30 October 2003 "Halloween" superstorm period. At 40 km altitude, the refractivity bias under disturbed conditions is approximately three times larger than quiet time. These results suggest the need for ionospheric monitoring as part of an RO-based climate observation strategy. We find that even during quiet conditions, the magnitude of retrieval bias depends critically on assumed ionospheric electron density structure, which may explain variations in previously published bias estimates that use a variety of assumptions regarding large scale ionospheric structure. We quantify the impact of spacecraft orbit altitude on the magnitude of bending angle and retrieval error. Satellites in higher altitude orbits (700+ km) tend to have lower residual biases due to the tendency of the residual bending to cancel between the top and bottomside ionosphere. Another factor affecting accuracy is the commonly-used assumption that refractive index is unity at the receiver. We conclude with remarks on the implications of this study for long-term climate monitoring using RO.

  13. An Open-Source Galaxy Redshift Survey Simulator for next-generation Large Scale Structure Surveys

    NASA Astrophysics Data System (ADS)

    Seijak, Uros

    Galaxy redshift surveys produce three-dimensional maps of the galaxy distribution. On large scales these maps trace the underlying matter fluctuations in a relatively simple manner, so that the properties of the primordial fluctuations along with the overall expansion history and growth of perturbations can be extracted. The BAO standard ruler method to measure the expansion history of the universe using galaxy redshift surveys is thought to be robust to observational artifacts and understood theoretically with high precision. These same surveys can offer a host of additional information, including a measurement of the growth rate of large scale structure through redshift space distortions, the possibility of measuring the sum of neutrino masses, tighter constraints on the expansion history through the Alcock-Paczynski effect, and constraints on the scale-dependence and non-Gaussianity of the primordial fluctuations. Extracting this broadband clustering information hinges on both our ability to minimize and subtract observational systematics to the observed galaxy power spectrum, and our ability to model the broadband behavior of the observed galaxy power spectrum with exquisite precision. Rapid development on both fronts is required to capitalize on WFIRST's data set. We propose to develop an open-source computational toolbox that will propel development in both areas by connecting large scale structure modeling and instrument and survey modeling with the statistical inference process. We will use the proposed simulator to both tailor perturbation theory and fully non-linear models of the broadband clustering of WFIRST galaxies and discover novel observables in the non-linear regime that are robust to observational systematics and able to distinguish between a wide range of spatial and dynamic biasing models for the WFIRST galaxy redshift survey sources. We have demonstrated the utility of this approach in a pilot study of the SDSS-III BOSS galaxies, in which we

  14. SfM with MRFs: discrete-continuous optimization for large-scale structure from motion.

    PubMed

    Crandall, David J; Owens, Andrew; Snavely, Noah; Huttenlocher, Daniel P

    2013-12-01

    Recent work in structure from motion (SfM) has built 3D models from large collections of images downloaded from the Internet. Many approaches to this problem use incremental algorithms that solve progressively larger bundle adjustment problems. These incremental techniques scale poorly as the image collection grows, and can suffer from drift or local minima. We present an alternative framework for SfM based on finding a coarse initial solution using hybrid discrete-continuous optimization and then improving that solution using bundle adjustment. The initial optimization step uses a discrete Markov random field (MRF) formulation, coupled with a continuous Levenberg-Marquardt refinement. The formulation naturally incorporates various sources of information about both the cameras and points, including noisy geotags and vanishing point (VP) estimates. We test our method on several large-scale photo collections, including one with measured camera positions, and show that it produces models that are similar to or better than those produced by incremental bundle adjustment, but more robustly and in a fraction of the time. PMID:24136425

  15. SfM with MRFs: Discrete-Continuous Optimization for Large-Scale Structure from Motion.

    PubMed

    Crandall, David J; Owens, Andrew; Snavely, Noah; Huttenlocher, Daniel P

    2012-10-01

    Recent work in structure from motion (SfM) has built 3D models from large collections of images downloaded from the Internet. Many approaches to this problem use incremental algorithms that solve progressively larger bundle adjustment problems. These incremental techniques scale poorly as the image collection grows, and can suffer from drift or local minima. We present an alternative framework for SfM based on finding a coarse initial solution using hybrid discrete-continuous optimization, and then improving that solution using bundle adjustment. The initial optimization step uses a discrete Markov random field (MRF) formulation, coupled with a continuous Levenberg-Marquardt refinement. The formulation naturally incorporates various sources of information about both the cameras and points, including noisy geotags and vanishing point estimates. We test our method on several large-scale photo collections, including one with measured camera positions, and show that it produces models that are similar to or better than those produced by incremental bundle adjustment, but more robustly and in a fraction of the time. PMID:23045369

  16. Efficient Large-Scale Structure From Motion by Fusing Auxiliary Imaging Information.

    PubMed

    Cui, Hainan; Shen, Shuhan; Gao, Wei; Hu, Zhanyi

    2015-11-01

    One of the potentially effective means for large-scale 3D scene reconstruction is to reconstruct the scene in a global manner, rather than incrementally, by fully exploiting available auxiliary information on the imaging condition, such as camera location by Global Positioning System (GPS), orientation by inertial measurement unit (or compass), focal length from EXIF, and so on. However, such auxiliary information, though informative and valuable, is usually too noisy to be directly usable. In this paper, we present an approach by taking advantage of such noisy auxiliary information to improve structure from motion solving. More specifically, we introduce two effective iterative global optimization algorithms initiated with such noisy auxiliary information. One is a robust rotation averaging algorithm to deal with contaminated epipolar graph, the other is a robust scene reconstruction algorithm to deal with noisy GPS data for camera centers initialization. We found that by exclusively focusing on the estimated inliers at the current iteration, the optimization process initialized by such noisy auxiliary information could converge well and efficiently. Our proposed method is evaluated on real images captured by unmanned aerial vehicle, StreetView car, and conventional digital cameras. Extensive experimental results show that our method performs similarly or better than many of the state-of-art reconstruction approaches, in terms of reconstruction accuracy and completeness, but is more efficient and scalable for large-scale image data sets.

  17. Ward identities and consistency relations for the large scale structure with multiple species

    SciTech Connect

    Peloso, Marco; Pietroni, Massimo E-mail: pietroni@pd.infn.it

    2014-04-01

    We present fully nonlinear consistency relations for the squeezed bispectrum of Large Scale Structure. These relations hold when the matter component of the Universe is composed of one or more species, and generalize those obtained in [1,2] in the single species case. The multi-species relations apply to the standard dark matter + baryons scenario, as well as to the case in which some of the fields are auxiliary quantities describing a particular population, such as dark matter halos or a specific galaxy class. If a large scale velocity bias exists between the different populations new terms appear in the consistency relations with respect to the single species case. As an illustration, we discuss two physical cases in which such a velocity bias can exist: (1) a new long range scalar force in the dark matter sector (resulting in a violation of the equivalence principle in the dark matter-baryon system), and (2) the distribution of dark matter halos relative to that of the underlying dark matter field.

  18. Efficient Large-Scale Structure From Motion by Fusing Auxiliary Imaging Information.

    PubMed

    Cui, Hainan; Shen, Shuhan; Gao, Wei; Hu, Zhanyi

    2015-11-01

    One of the potentially effective means for large-scale 3D scene reconstruction is to reconstruct the scene in a global manner, rather than incrementally, by fully exploiting available auxiliary information on the imaging condition, such as camera location by Global Positioning System (GPS), orientation by inertial measurement unit (or compass), focal length from EXIF, and so on. However, such auxiliary information, though informative and valuable, is usually too noisy to be directly usable. In this paper, we present an approach by taking advantage of such noisy auxiliary information to improve structure from motion solving. More specifically, we introduce two effective iterative global optimization algorithms initiated with such noisy auxiliary information. One is a robust rotation averaging algorithm to deal with contaminated epipolar graph, the other is a robust scene reconstruction algorithm to deal with noisy GPS data for camera centers initialization. We found that by exclusively focusing on the estimated inliers at the current iteration, the optimization process initialized by such noisy auxiliary information could converge well and efficiently. Our proposed method is evaluated on real images captured by unmanned aerial vehicle, StreetView car, and conventional digital cameras. Extensive experimental results show that our method performs similarly or better than many of the state-of-art reconstruction approaches, in terms of reconstruction accuracy and completeness, but is more efficient and scalable for large-scale image data sets. PMID:26111397

  19. Single-field consistency relations of large scale structure part II: resummation and redshift space

    SciTech Connect

    Creminelli, Paolo; Gleyzes, Jérôme; Vernizzi, Filippo; Simonović, Marko E-mail: jerome.gleyzes@cea.fr E-mail: filippo.vernizzi@cea.fr

    2014-02-01

    We generalize the recently derived single-field consistency relations of Large Scale Structure in two directions. First, we treat the effect of the long modes (with momentum q) on the short ones (with momentum k) non-perturbatively, by writing resummed consistency relations which do not require k/q⋅δ{sub q} << 1. These relations do not make any assumptions on the short-scales physics and are extended to include (an arbitrary number of) multiple long modes, internal lines with soft momenta and soft loops. We do several checks of these relations in perturbation theory and we verify that the effect of soft modes always cancels out in equal-time correlators. Second, we write the relations directly in redshift space, without assuming the single-stream approximation: not only the long mode affects the short scales as a homogeneous gravitational field, but it also displaces them by its velocity along the line-of-sight. Redshift space consistency relations still vanish when short modes are taken at equal time: an observation of a signal in the squeezed limit would point towards multifield inflation or a violation of the equivalence principle.

  20. Primordial Magnetic Field Effects on the CMB and Large-Scale Structure

    DOE PAGES

    Yamazaki, Dai G.; Ichiki, Kiyotomo; Kajino, Toshitaka; Mathews, Grant J.

    2010-01-01

    Mmore » agnetic fields are everywhere in nature, and they play an important role in every astronomical environment which involves the formation of plasma and currents. It is natural therefore to suppose that magnetic fields could be present in the turbulent high-temperature environment of the big bang. Such a primordial magnetic field (PMF) would be expected to manifest itself in the cosmic microwave background (CMB) temperature and polarization anisotropies, and also in the formation of large-scale structure. In this paper, we summarize the theoretical framework which we have developed to calculate the PMF power spectrum to high precision. Using this formulation, we summarize calculations of the effects of a PMF which take accurate quantitative account of the time evolution of the cutoff scale. We review the constructed numerical program, which is without approximation, and an improvement over the approach used in a number of previous works for studying the effect of the PMF on the cosmological perturbations. We demonstrate how the PMF is an important cosmological physical process on small scales. We also summarize the current constraints on the PMF amplitude B λ and the power spectral index n B which have been deduced from the available CMB observational data by using our computational framework.« less

  1. The Detection and Removal of Large-scale Detector Background Structures in NICMOS Observations

    NASA Astrophysics Data System (ADS)

    Hsiao, E. Y.; Suzuki, N.; Ripoche, P.; Aldering, G.; Faccioli, L.; Huang, X.; Perlmutter, S.; Spadafora, A. L.; Strovink, M.; Lidman, C.; Dawson, K. S.; Bergeron, L. E.; Deustua, S.; Fruchter, A. S.; Barbary, K.; Fakhouri, H. K.; Meyers, J.; Rubin, D.

    2010-07-01

    After applying the standard corrections for well-studied NICMOS anomalies, significant large-scale spatial background variation remains. We report on the detections of a sky-dependent fringe pattern in the F110W filter, and a time-dependent residual corner glow in the calibrated NICMOS deep science images. We also describe methods developed to further correct these anomalies. A model of the background structure is derived from the algebraic manipulation of stacked science images and consists of the following two components. The first component is constant, dominated by a residual glow as high as 20 DN at the corners and by residual flat and persistence structures at the center. The second component, which scales with sky level, displays a clear fringe pattern with 10% variation for F110W images. However this pattern is not detected for F160W images. Using these model components to correct for the anomalies significantly improves the cosmetic appearance of NICMOS images and reduces the magnitude scatter in the photometry of distant galaxies by 20%.

  2. Large-Scale Structures in Earth Foreshock Waves during Radial IMF

    NASA Astrophysics Data System (ADS)

    Ganse, Urs; Pfau-Kempf, Yann; Hoilijoki, Sanni; von Alfthan, Sebastian; Palmroth, Minna; Vainio, Rami

    2016-04-01

    Wave instabilities in the foreshock region of Earth's bow shock lead to formation of magnetic field and density fluctuations, commonly observed by spacecraft as 30-second waves. These waves are oblique to the interplanetary magnetic field, with the mechanism leading to oblique propagation still under discussion. Using the VLASIATOR (http://vlasiator.fmi.fi) global hybrid-Vlasov simulation code, we performed runs of radial and near-radial IMF conditions and were able to reproduce the development of these oblique foreshock wave instabilities, revealing a peculiar global structure, in which waves with different wave-vector directions are arranged around central spines, which are spatially offset from the bow shock's nose. We present analysis of the waves' growth behaviour and combine them with artificial observations, comparing to in-situ spacecraft data. Furthermore, we employed a test particle approach to investigate the formation mechanism of the instabilities' large-scale structure, and found that a coupling between the microphysics of wave-particle interaction and global-scale shock and foreshock geometry is essential to explain them.

  3. The bispectrum in the Effective Field Theory of Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Baldauf, Tobias; Mercolli, Lorenzo; Mirbabayi, Mehrdad; Pajer, Enrico

    2015-05-01

    We study the bispectrum in the Effective Field Theory of Large Scale Structure, consistently accounting for the effects of short-scale dynamics. We begin by proving that, as long as the theory is perturbative, it can be formulated to arbitrary order using only operators that are local in time. We then derive all the new operators required to cancel the UV-divergences and obtain a physically meaningful prediction for the one-loop bispectrum. In addition to new, subleading stochastic noises and the viscosity term needed for the one-loop power spectrum, we find three new effective operators. The three new parameters can be constrained by comparing with N-body simulations. The best fit is precisely what is suggested by the structure of UV-divergences, hence justifying a formula for the EFTofLSS bispectrum whose only fitting parameter is already fixed by the power spectrum. This result predicts the bispectrum of N-body simulations up to kmax≈0.22 h Mpc-1 at 0z=, an improvement by nearly a factor of two as compared to one-loop standard perturbation theory.

  4. Understanding structural-functional relationships in the human brain: a large-scale network perspective.

    PubMed

    Wang, Zhijiang; Dai, Zhengjia; Gong, Gaolang; Zhou, Changsong; He, Yong

    2015-06-01

    Relating the brain's structural connectivity (SC) to its functional connectivity (FC) is a fundamental goal in neuroscience because it is capable of aiding our understanding of how the relatively fixed SC architecture underlies human cognition and diverse behaviors. With the aid of current noninvasive imaging technologies (e.g., structural MRI, diffusion MRI, and functional MRI) and graph theory methods, researchers have modeled the human brain as a complex network of interacting neuronal elements and characterized the underlying structural and functional connectivity patterns that support diverse cognitive functions. Specifically, research has demonstrated a tight SC-FC coupling, not only in interregional connectivity strength but also in network topologic organizations, such as community, rich-club, and motifs. Moreover, this SC-FC coupling exhibits significant changes in normal development and neuropsychiatric disorders, such as schizophrenia and epilepsy. This review summarizes recent progress regarding the SC-FC relationship of the human brain and emphasizes the important role of large-scale brain networks in the understanding of structural-functional associations. Future research directions related to this topic are also proposed.

  5. Kinematic morphology of large-scale structure: evolution from potential to rotational flow

    SciTech Connect

    Wang, Xin; Szalay, Alex; Aragón-Calvo, Miguel A.; Neyrinck, Mark C.; Eyink, Gregory L.

    2014-09-20

    As an alternative way to describe the cosmological velocity field, we discuss the evolution of rotational invariants constructed from the velocity gradient tensor. Compared with the traditional divergence-vorticity decomposition, these invariants, defined as coefficients of the characteristic equation of the velocity gradient tensor, enable a complete classification of all possible flow patterns in the dark-matter comoving frame, including both potential and vortical flows. We show that this tool, first introduced in turbulence two decades ago, is very useful for understanding the evolution of the cosmic web structure, and in classifying its morphology. Before shell crossing, different categories of potential flow are highly associated with the cosmic web structure because of the coherent evolution of density and velocity. This correspondence is even preserved at some level when vorticity is generated after shell crossing. The evolution from the potential to vortical flow can be traced continuously by these invariants. With the help of this tool, we show that the vorticity is generated in a particular way that is highly correlated with the large-scale structure. This includes a distinct spatial distribution and different types of alignment between the cosmic web and vorticity direction for various vortical flows. Incorporating shell crossing into closed dynamical systems is highly non-trivial, but we propose a possible statistical explanation for some of the phenomena relating to the internal structure of the three-dimensional invariant space.

  6. Evidence for the interaction of large scale magnetic structures in solar flares

    NASA Technical Reports Server (NTRS)

    Mandrini, C. H.; Demoulin, P.; Henoux, J. C.; Machado, M. E.

    1991-01-01

    By modeling the observed vertical magnetic field of an active region AR 2372 by the potential field of an ensemble of magnetic dipoles, the likely location of the separatrices, surfaces that separates cells of different field line connectivities, and of the separator which is the intersection of the separatrices, is derived. Four of the five off-band H-alpha kernels of a flare that occurred less than 20 minutes before obtaining the magnetogram are shown to have taken place near or at the separatrices. These H-alpha kernels are connected by field lines that pass near the separator. This indicates that the flare may have resulted from the interaction in the separator region of large scale magnetic structures.

  7. Linear algebraic calculation of the Green's function for large-scale electronic structure theory

    NASA Astrophysics Data System (ADS)

    Takayama, R.; Hoshi, T.; Sogabe, T.; Zhang, S.-L.; Fujiwara, T.

    2006-04-01

    A linear algebraic method named the shifted conjugate-orthogonal conjugate-gradient method is introduced for large-scale electronic structure calculation. The method gives an iterative solver algorithm of the Green’s function and the density matrix without calculating eigenstates. The problem is reduced to independent linear equations at many energy points and the calculation is actually carried out only for a single energy point. The method is robust against the round-off error and the calculation can reach the machine accuracy. With the observation of residual vectors, the accuracy can be controlled, microscopically, independently for each element of the Green’s function, and dynamically, at each step in dynamical simulations. The method is applied to both a semiconductor and a metal.

  8. Neutrino Mass Bounds from 0{nu}{beta}{beta} Decays and Large Scale Structures

    SciTech Connect

    Keum, Y.-Y.; Ichiki, K.; Kajino, T.

    2008-05-21

    We investigate the way how the total mass sum of neutrinos can be constrained from the neutrinoless double beta decay and cosmological probes with cosmic microwave background (WMAP 3-year results), large scale structures including 2dFGRS and SDSS data sets. First we discuss, in brief, on the current status of neutrino mass bounds from neutrino beta decays and cosmic constrain within the flat {lambda}CMD model. In addition, we explore the interacting neutrino dark-energy model, where the evolution of neutrino masses is determined by quintessence scalar filed, which is responsable for cosmic acceleration today. Assuming the flatness of the universe, the constraint we can derive from the current observation is {sigma}m{sub {nu}}<0.87 eV at the 95% confidence level, which is consistent with {sigma}m{sub {nu}}<0.68 eV in the flat {lambda}CDM model.

  9. Mantle convection and the large scale structures of the Earth's gravitational field

    NASA Technical Reports Server (NTRS)

    Peltier, W. R.

    1985-01-01

    The connection between the observed large scale structure of the Earths' gravitational field, as represented by the GEM10 model, and the surface kinematic manifestations of plate tectonics, as represented by the absolute plate motion model of Minster and Jordan, is explored using a somewhat novel method of analysis. Two scalar derivatives of the field of surface plate velocities, namely the horizontal divergence and the radial vorticity, are computed from the plate motion data. These two scalars are respectively determined by the poloidal and toroidal scalars in terms of which any essentially solenoidal vector field may be completely represented. They provide a compact summary of the observed plate boundary types in nature, with oceanic ridges and trenches being essentially boundaries of divergence, and transform faults being essentially boundaries of vorticity.

  10. Automatic three-dimensional measurement of large-scale structure based on vision metrology.

    PubMed

    Zhu, Zhaokun; Guan, Banglei; Zhang, Xiaohu; Li, Daokui; Yu, Qifeng

    2014-01-01

    All relevant key techniques involved in photogrammetric vision metrology for fully automatic 3D measurement of large-scale structure are studied. A new kind of coded target consisting of circular retroreflective discs is designed, and corresponding detection and recognition algorithms based on blob detection and clustering are presented. Then a three-stage strategy starting with view clustering is proposed to achieve automatic network orientation. As for matching of noncoded targets, the concept of matching path is proposed, and matches for each noncoded target are found by determination of the optimal matching path, based on a novel voting strategy, among all possible ones. Experiments on a fixed keel of airship have been conducted to verify the effectiveness and measuring accuracy of the proposed methods. PMID:24701143

  11. The structure of the white-light corona and the large-scale solar magnetic field

    NASA Technical Reports Server (NTRS)

    Sime, D. G.; Mccabe, M. K.

    1990-01-01

    The large-scale density structure of the white-light solar corona is compared to the organization of the solar magnetic field as identified by the appearance of neutral lines in the photosphere to examine whether any consistent relationship exists between the two. During the period covering Carrington rotations 1717 to 1736 brightness enhancements in the low corona tend to lie over the global neutral sheet identified in the photospheric magnetic field. The brightest of these enhancements are associated with neutral lines throguh active regions. These associations are not 1-1, but do hold both in stable and evolving conditions of the corona. A significant number of long-lived neutral lines is found, including filaments seen in H-alpha, for which there are not coronal enhancements.

  12. Automatic Three-Dimensional Measurement of Large-Scale Structure Based on Vision Metrology

    PubMed Central

    Zhu, Zhaokun; Guan, Banglei; Zhang, Xiaohu; Li, Daokui; Yu, Qifeng

    2014-01-01

    All relevant key techniques involved in photogrammetric vision metrology for fully automatic 3D measurement of large-scale structure are studied. A new kind of coded target consisting of circular retroreflective discs is designed, and corresponding detection and recognition algorithms based on blob detection and clustering are presented. Then a three-stage strategy starting with view clustering is proposed to achieve automatic network orientation. As for matching of noncoded targets, the concept of matching path is proposed, and matches for each noncoded target are found by determination of the optimal matching path, based on a novel voting strategy, among all possible ones. Experiments on a fixed keel of airship have been conducted to verify the effectiveness and measuring accuracy of the proposed methods. PMID:24701143

  13. The trispectrum in the Effective Field Theory of Large Scale Structure

    NASA Astrophysics Data System (ADS)

    Bertolini, Daniele; Schutz, Katelin; Solon, Mikhail P.; Zurek, Kathryn M.

    2016-06-01

    We compute the connected four point correlation function (the trispectrum in Fourier space) of cosmological density perturbations at one-loop order in Standard Perturbation Theory (SPT) and the Effective Field Theory of Large Scale Structure (EFT of LSS). This paper is a companion to our earlier work on the non-Gaussian covariance of the matter power spectrum, which corresponds to a particular wavenumber configuration of the trispectrum. In the present calculation, we highlight and clarify some of the subtle aspects of the EFT framework that arise at third order in perturbation theory for general wavenumber configurations of the trispectrum. We consistently incorporate vorticity and non-locality in time into the EFT counterterms and lay out a complete basis of building blocks for the stress tensor. We show predictions for the one-loop SPT trispectrum and the EFT contributions, focusing on configurations which have particular relevance for using LSS to constrain primordial non-Gaussianity.

  14. Stochastic inflation lattice simulations - Ultra-large scale structure of the universe

    NASA Technical Reports Server (NTRS)

    Salopek, D. S.

    1991-01-01

    Non-Gaussian fluctuations for structure formation may arise in inflation from the nonlinear interaction of long wavelength gravitational and scalar fields. Long wavelength fields have spatial gradients, a (exp -1), small compared to the Hubble radius, and they are described in terms of classical random fields that are fed by short wavelength quantum noise. Lattice Langevin calculations are given for a toy model with a scalar field interacting with an exponential potential where one can obtain exact analytic solutions of the Fokker-Planck equation. For single scalar field models that are consistent with current microwave background fluctuations, the fluctuations are Gaussian. However, for scales much larger than our observable Universe, one expects large metric fluctuations that are non-Gaussian. This example illuminates non-Gaussian models involving multiple scalar fields which are consistent with current microwave background limits.

  15. Searching for a dipole modulation in the large-scale structure of the Universe

    NASA Astrophysics Data System (ADS)

    Fernández-Cobos, R.; Vielva, P.; Pietrobon, D.; Balbi, A.; Martínez-González, E.; Barreiro, R. B.

    2014-07-01

    Several statistical anomalies in the cosmic microwave background (CMB) temperature anisotropies seem to defy the assumption of a homogeneous and isotropic universe. In particular, a dipole modulation has been detected both in WMAP and Planck data. We adapt the methodology proposed by Eriksen et al. on CMB data to galaxy surveys, tracing the large-scale structure. We analyse the National Radio Astronomy Observatory (NRAO) and Very Large Array (VLA) Sky Survey data at a resolution of ˜2° for three different flux thresholds: 2.5, 5.0 and 10.0 mJy, respectively. No evidence of a dipole modulation is found. This result suggests that the origin of the dipole asymmetry found in the CMB cannot be assigned to secondary anisotropies produced at redshifts around z = 1. However, it could still have been generated at redshifts higher or lower, such as the integrated Sachs-Wolfe effect produced by the local structures. Other all-sky surveys, like the infrared WISE catalogue, could help to explore with a high sensitivity a redshift interval closer than the one probed with NVSS.

  16. Large-Scale Recombinant Expression and Purification of Human Tyrosinase Suitable for Structural Studies

    PubMed Central

    Lai, Xuelei; Soler-Lopez, Montserrat; Wichers, Harry J.

    2016-01-01

    Human tyrosinase (TYR) is a glycoprotein that initiates the first two reactions in the melanin biosynthesis pathway. Mutations in its encoding gene cause Oculocutaneous Albinism type I (OCA1), the most severe form of albinism, which is a group of autosomal recessive disorders characterized by reduced or absent production of melanin in skin, hair and eyes. Despite extensive structural and characterization studies of its homologues in lower eukaryotic organisms, the catalytic mechanism of human TYR and the molecular basis of OCA1 are largely unknown. In this work, we have carried out a large-scale recombinant expression of TYR that has enabled us to obtain high yields of pure and active protein, required for crystallization trials and screening of skin whitening agents, which is highly demanded in the cosmetic industry. Addition of an N-terminal honeybee melittin signal peptide for secretion of the produced protein into the (protein-free) medium, as well as a cleavable His-tag at the C-terminus, was crucial for increasing the yield of pure protein. We have successfully crystallized two TYR variants, in both glycosylated and deglycosylated forms, showing preliminary X-ray diffraction patterns at 3.5 Å resolution. Hence, we have established an expression and purification protocol suitable for the crystal structure determination of human TYR, which will give unique atomic insight into the nature and conformation of the residues that shape the substrate binding pocket that will ultimately lead to efficient compound design. PMID:27551823

  17. Multi-reflected echoes: Another ionogram signature of large-scale wave structure

    NASA Astrophysics Data System (ADS)

    Tsunoda, Roland T.

    2009-01-01

    One or more steeply sloped traces have been found in evening ionograms taken from the Kwajalein Atoll (4.3°N dip latitude) during July 1979. Their resemblance to the normal F trace suggests that they are echoes that have undergone a large number of reflections from the F layer. These multi-reflected echoes (MREs) are interpreted in terms of focusing produced by curved isodensity contours in the bottomside F layer, which appear to be associated with large-scale wave structure (LSWS) that develops in the bottomside F layer. MREs appear to be another signature for LSWS, together with satellite traces that appear later in time, closer to the onset of plasma structure referred to as equatorial spread F. MREs are interesting because they display, for the data set examined, a strong preference to occur during the post-sunset rise of the F layer, which includes E-region sunset. How this finding affects our understanding of LSWS is discussed.

  18. Large-Scale Recombinant Expression and Purification of Human Tyrosinase Suitable for Structural Studies.

    PubMed

    Lai, Xuelei; Soler-Lopez, Montserrat; Wichers, Harry J; Dijkstra, Bauke W

    2016-01-01

    Human tyrosinase (TYR) is a glycoprotein that initiates the first two reactions in the melanin biosynthesis pathway. Mutations in its encoding gene cause Oculocutaneous Albinism type I (OCA1), the most severe form of albinism, which is a group of autosomal recessive disorders characterized by reduced or absent production of melanin in skin, hair and eyes. Despite extensive structural and characterization studies of its homologues in lower eukaryotic organisms, the catalytic mechanism of human TYR and the molecular basis of OCA1 are largely unknown. In this work, we have carried out a large-scale recombinant expression of TYR that has enabled us to obtain high yields of pure and active protein, required for crystallization trials and screening of skin whitening agents, which is highly demanded in the cosmetic industry. Addition of an N-terminal honeybee melittin signal peptide for secretion of the produced protein into the (protein-free) medium, as well as a cleavable His-tag at the C-terminus, was crucial for increasing the yield of pure protein. We have successfully crystallized two TYR variants, in both glycosylated and deglycosylated forms, showing preliminary X-ray diffraction patterns at 3.5 Å resolution. Hence, we have established an expression and purification protocol suitable for the crystal structure determination of human TYR, which will give unique atomic insight into the nature and conformation of the residues that shape the substrate binding pocket that will ultimately lead to efficient compound design. PMID:27551823

  19. Herschel view of the large-scale structure in the Chamaeleon dark clouds

    NASA Astrophysics Data System (ADS)

    Alves de Oliveira, C.; Schneider, N.; Merín, B.; Prusti, T.; Ribas, Á.; Cox, N. L. J.; Vavrek, R.; Könyves, V.; Arzoumanian, D.; Puga, E.; Pilbratt, G. L.; Kóspál, Á.; André, Ph.; Didelon, P.; Men'shchikov, A.; Royer, P.; Waelkens, C.; Bontemps, S.; Winston, E.; Spezzi, L.

    2014-08-01

    Context. The Chamaeleon molecular cloud complex is one of the nearest star-forming sites and encompasses three molecular clouds (Cha I, II, and III) that have a different star-formation history, from quiescent (Cha III) to actively forming stars (Cha II), and one that reaches the end of star-formation (Cha I). Aims: We aim at characterising the large-scale structure of the three sub-regions of the Chamaeleon molecular cloud complex by analysing new far-infrared images taken with the Herschel Space Observatory. Methods: We derived column density and temperature maps using PACS and SPIRE observations from the Herschel Gould Belt Survey and applied several tools, such as filament tracing, power-spectra, Δ-variance, and probability distribution functions (PDFs) of the column density, to derive the physical properties. Results: The column density maps reveal a different morphological appearance for each of the three clouds, with a ridge-like structure for Cha I, a clump-dominated regime for Cha II, and an intricate filamentary network for Cha III. The filament width is measured to be about 0.12 ± 0.04 pc in the three clouds, and the filaments are found to be gravitationally unstable in Cha I and II, but mostly subcritical in Cha III. Faint filaments (striations) are prominent in Cha I and are mostly aligned with the large-scale magnetic field. The PDFs of all regions show a lognormal distribution at low column densities. For higher densities, the PDF of Cha I shows a turnover indicative of an extended higher density component and culminates in a power-law tail. Cha II shows a power-law tail with a slope characteristic of gravity. The PDF of Cha III can be best fit by a single lognormal. Conclusions: The turbulence properties of the three regions are found to be similar, pointing towards a scenario where the clouds are impacted by large-scale processes. The magnetic field might possibly play an important role for the star formation efficiency in the Chamaeleon clouds

  20. Large scale dynamic systems

    NASA Technical Reports Server (NTRS)

    Doolin, B. F.

    1975-01-01

    Classes of large scale dynamic systems were discussed in the context of modern control theory. Specific examples discussed were in the technical fields of aeronautics, water resources and electric power.

  1. On validating the relationship of ionogram signatures to large-scale wave structure

    NASA Astrophysics Data System (ADS)

    Tsunoda, Roland T.; Thampi, Smitha V.; Nguyen, Thu Trang; Yamamoto, Mamoru

    2013-10-01

    The development of plasma structure in the nighttime equatorial F layer, known as equatorial spread F (ESF), appears to be influenced (if not controlled) by the presence of large-scale wave structure (LSWS). To understand this process, knowledge of the properties of LSWS is crucial. A major obstacle, in this regard, is the virtual lack of LSWS data; most instruments in use today are unable to detect spatial structure in the absence of horizontal drift. There appears to be some information about LSWS contained in two ionogram signatures, multi-reflected echoes (MREs) and satellite traces (STs). How useful they can be depends, however, on knowledge of their relationship to LSWS. Results from a case study are presented herein, which show that MREs are likely produced by a tilted, or shallowly modulated, reflecting surface in the bottomside F layer, whereas STs are produced by more steeply sloped surfaces. The accumulated results are shown to lead to a working hypothesis for LSWS development followed by ESF. Differences between LSWS and a traveling ionospheric disturbance are also pointed out.

  2. Large-scale structure of the solar corona and inner heliosphere

    NASA Technical Reports Server (NTRS)

    Mikic, Z.; Linker, J. A.

    1995-01-01

    The large-scale structure of the solar corona influences solar activity particularly coronal mass ejections (CMEs). The helmet streamers that are observed to dominate the structure of the inner corona are formed by the interaction of the solar wind with coronal magnetic fields. We have simulated this interaction in three dimensions using the magnetohydrodynamic (MHD) equations. In order to create a realistic model, we use the magnetic field that is observed at the Sun's surface (deduced from daily Wilcox Solar Observatory magnetograms) as input, in combination with specified density and temperature profiles at the surface. A self-consistent 3D solar-wind solution is developed by integrating the MHD equations in time to steady state. Such solutions can reproduce the observed structures that are seen in coronagraph images and eclipse photographs of the corona. This model allows us to accurately determine the position of the heliospheric current sheet. We will compare the results obtained from our model with Ulysses observations during the period May-June 1993, and with an eclipse photograph of the corona on November 3, 1994.

  3. Large Scale Mapping of Vegetation Structure and Terrain Surface using Single Photon Lidar (SPL)

    NASA Astrophysics Data System (ADS)

    Tang, H.; Swatantran, A.; Barrett, T. C.; Decola, P.; Dubayah, R.

    2015-12-01

    Accurate measurements of vegetation structure are critical for reducing uncertainties in carbon science and biodiversity studies. In recent years, Lidar has emerged as a state-of-the-art technology for characterizing vegetation structure at various spatial scales. Single photon lidar (SPL) is one of the latest developments with much greater data acquisition efficiency than conventional lidar. SPL requires only one photon to record a detection for each ranging measurement as against thousands in the case of other lidar systems. In this study, we present results from an experimental SPL instrument- the High Resolution Quantum Lidar System (HRQLS). HRQLS was flown over an entire county in western Maryland, USA in September 2013 to acquire a dataset with a mean density of 13 pts/m2. We developed a multistage filtering method to remove solar noise in the raw HRQLS data, and derived a county-wide high-resolution Canopy Height (1m) and Digital Elevation Model (2 m) from the de-noised dataset. Next, we assessed the accuracy of HRQLS CHM and DEM with existing field data, National Geodetic Survey data, and an existing discrete return lidar (DRL) dataset. A comparison of canopy heights between SPL, DRL and field data showed similar results with much higher detail from SPL data. There was also a good agreement between ground elevations from SPL, DRL and geological survey data. Our results demonstrate SPL capabilities in acquiring accurate canopy structure and topographic measurements over large areas, which can greatly benefit forest carbon monitoring and habitat assessments.

  4. Development and Applications of a Modular Parallel Process for Large Scale Fluid/Structures Problems

    NASA Technical Reports Server (NTRS)

    Guruswamy, Guru P.; Byun, Chansup; Kwak, Dochan (Technical Monitor)

    2001-01-01

    A modular process that can efficiently solve large scale multidisciplinary problems using massively parallel super computers is presented. The process integrates disciplines with diverse physical characteristics by retaining the efficiency of individual disciplines. Computational domain independence of individual disciplines is maintained using a meta programming approach. The process integrates disciplines without affecting the combined performance. Results are demonstrated for large scale aerospace problems on several supercomputers. The super scalability and portability of the approach is demonstrated on several parallel computers.

  5. Development and Applications of a Modular Parallel Process for Large Scale Fluid/Structures Problems

    NASA Technical Reports Server (NTRS)

    Guruswamy, Guru P.; Kwak, Dochan (Technical Monitor)

    2002-01-01

    A modular process that can efficiently solve large scale multidisciplinary problems using massively parallel supercomputers is presented. The process integrates disciplines with diverse physical characteristics by retaining the efficiency of individual disciplines. Computational domain independence of individual disciplines is maintained using a meta programming approach. The process integrates disciplines without affecting the combined performance. Results are demonstrated for large scale aerospace problems on several supercomputers. The super scalability and portability of the approach is demonstrated on several parallel computers.

  6. MEASURING LENSING MAGNIFICATION OF QUASARS BY LARGE SCALE STRUCTURE USING THE VARIABILITY-LUMINOSITY RELATION

    SciTech Connect

    Bauer, Anne H.; Jerke, Jonathan; Scalzo, Richard; Rabinowitz, David; Ellman, Nancy; Baltay, Charles

    2011-05-10

    We introduce a technique to measure gravitational lensing magnification using the variability of type I quasars. Quasars' variability amplitudes and luminosities are tightly correlated, on average. Magnification due to gravitational lensing increases the quasars' apparent luminosity, while leaving the variability amplitude unchanged. Therefore, the mean magnification of an ensemble of quasars can be measured through the mean shift in the variability-luminosity relation. As a proof of principle, we use this technique to measure the magnification of quasars spectroscopically identified in the Sloan Digital Sky Survey (SDSS), due to gravitational lensing by galaxy clusters in the SDSS MaxBCG catalog. The Palomar-QUEST Variability Survey, reduced using the DeepSky pipeline, provides variability data for the sources. We measure the average quasar magnification as a function of scaled distance (r/R{sub 200}) from the nearest cluster; our measurements are consistent with expectations assuming Navarro-Frenk-White cluster profiles, particularly after accounting for the known uncertainty in the clusters' centers. Variability-based lensing measurements are a valuable complement to shape-based techniques because their systematic errors are very different, and also because the variability measurements are amenable to photometric errors of a few percent and to depths seen in current wide-field surveys. Given the volume data of the expected from current and upcoming surveys, this new technique has the potential to be competitive with weak lensing shear measurements of large-scale structure.

  7. Measuring Lensing Magnification of Quasars by Large Scale Structure Using the Variability-Luminosity Relation

    NASA Astrophysics Data System (ADS)

    Bauer, Anne H.; Seitz, Stella; Jerke, Jonathan; Scalzo, Richard; Rabinowitz, David; Ellman, Nancy; Baltay, Charles

    2011-05-01

    We introduce a technique to measure gravitational lensing magnification using the variability of type I quasars. Quasars' variability amplitudes and luminosities are tightly correlated, on average. Magnification due to gravitational lensing increases the quasars' apparent luminosity, while leaving the variability amplitude unchanged. Therefore, the mean magnification of an ensemble of quasars can be measured through the mean shift in the variability-luminosity relation. As a proof of principle, we use this technique to measure the magnification of quasars spectroscopically identified in the Sloan Digital Sky Survey (SDSS), due to gravitational lensing by galaxy clusters in the SDSS MaxBCG catalog. The Palomar-QUEST Variability Survey, reduced using the DeepSky pipeline, provides variability data for the sources. We measure the average quasar magnification as a function of scaled distance (r/R 200) from the nearest cluster; our measurements are consistent with expectations assuming Navarro-Frenk-White cluster profiles, particularly after accounting for the known uncertainty in the clusters' centers. Variability-based lensing measurements are a valuable complement to shape-based techniques because their systematic errors are very different, and also because the variability measurements are amenable to photometric errors of a few percent and to depths seen in current wide-field surveys. Given the volume data of the expected from current and upcoming surveys, this new technique has the potential to be competitive with weak lensing shear measurements of large-scale structure.

  8. The Lagrangian-space Effective Field Theory of large scale structures

    NASA Astrophysics Data System (ADS)

    Porto, Rafael A.; Senatore, Leonardo; Zaldarriaga, Matias

    2014-05-01

    We introduce a Lagrangian-space Effective Field Theory (LEFT) formalism for the study of cosmological large scale structures. Unlike the previous Eulerian-space construction, it is naturally formulated as an effective field theory of extended objects in Lagrangian space. In LEFT the resulting finite size effects are described using a multipole expansion parameterized by a set of time dependent coefficients and organized in powers of the ratio of the wavenumber of interest k over the non-linear scale kNL. The multipoles encode the effects of the short distance modes on the long-wavelength universe and absorb UV divergences when present. There are no IR divergences in LEFT. Some of the parameters that control the perturbative approach are not assumed to be small and can be automatically resummed. We present an illustrative one-loop calculation for a power law universe. We describe the dynamics both at the level of the equations of motion and through an action formalism.

  9. The Lagrangian-space Effective Field Theory of large scale structures

    SciTech Connect

    Porto, Rafael A.; Zaldarriaga, Matias; Senatore, Leonardo E-mail: senatore@stanford.edu

    2014-05-01

    We introduce a Lagrangian-space Effective Field Theory (LEFT) formalism for the study of cosmological large scale structures. Unlike the previous Eulerian-space construction, it is naturally formulated as an effective field theory of extended objects in Lagrangian space. In LEFT the resulting finite size effects are described using a multipole expansion parameterized by a set of time dependent coefficients and organized in powers of the ratio of the wavenumber of interest k over the non-linear scale k{sub NL}. The multipoles encode the effects of the short distance modes on the long-wavelength universe and absorb UV divergences when present. There are no IR divergences in LEFT. Some of the parameters that control the perturbative approach are not assumed to be small and can be automatically resummed. We present an illustrative one-loop calculation for a power law universe. We describe the dynamics both at the level of the equations of motion and through an action formalism.

  10. Screening and large-scale expression of membrane proteins in mammalian cells for structural studies

    PubMed Central

    Goehring, April; Lee, Chia-Hsueh; Wang, Kevin H.; Michel, Jennifer Carlisle; Claxton, Derek P.; Baconguis, Isabelle; Althoff, Thorsten; Fischer, Suzanne; Garcia, K. Christopher; Gouaux, Eric

    2014-01-01

    Structural, biochemical and biophysical studies of eukaryotic membrane proteins are often hampered by difficulties in over-expression of the candidate molecule. Baculovirus transduction of mammalian cells (BacMam), although a powerful method to heterologously express membrane proteins, can be cumbersome for screening and expression of multiple constructs. We therefore developed plasmid Eric Gouaux (pEG) BacMam, a vector optimized for use in screening assays, as well as for efficient production of baculovirus and robust expression of the target protein. In this protocol we show how to use small-scale transient transfection and fluorescence-detection, size-exclusion chromatography (FSEC) experiments using a GFP-His8 tagged candidate protein to screen for monodispersity and expression level. Once promising candidates are identified, we describe how to generate baculovirus, transduce HEK293S GnTI− (N-acetylglucosaminyltransferase I-negative) cells in suspension culture, and over-express the candidate protein. We have used these methods to prepare pure samples of chicken acid-sensing ion channel 1a (cASIC1) and Caenorhabditis elegans glutamate-gated chloride channel (GluCl), for X-ray crystallography, demonstrating how to rapidly and efficiently screen hundreds of constructs and accomplish large-scale expression in 4-6 weeks. PMID:25299155

  11. The one-loop matter bispectrum in the Effective Field Theory of Large Scale Structures

    SciTech Connect

    Angulo, Raul E.; Foreman, Simon; Schmittfull, Marcel; Senatore, Leonardo

    2015-10-14

    With this study, given the importance of future large scale structure surveys for delivering new cosmological information, it is crucial to reliably predict their observables. The Effective Field Theory of Large Scale Structures (EFTofLSS) provides a manifestly convergent perturbative scheme to compute the clustering of dark matter in the weakly nonlinear regime in an expansion in k/kNL, where k is the wavenumber of interest and kNL is the wavenumber associated to the nonlinear scale. It has been recently shown that the EFTofLSS matches to 1% level the dark matter power spectrum at redshift zero up to k ≃ 0.3 h Mpc–1 and k ≃ 0.6 h Mpc–1 at one and two loops respectively, using only one counterterm that is fit to data. Similar results have been obtained for the momentum power spectrum at one loop. This is a remarkable improvement with respect to former analytical techniques. Here we study the prediction for the equal-time dark matter bispectrum at one loop. We find that at this order it is sufficient to consider the same counterterm that was measured in the power spectrum. Without any remaining free parameter, and in a cosmology for which kNL is smaller than in the previously considered cases (σ8=0.9), we find that the prediction from the EFTofLSS agrees very well with N-body simulations up to k ≃ 0.25 h Mpc–1, given the accuracy of the measurements, which is of order a few percent at the highest k's of interest. While the fit is very good on average up to k ≃ 0.25 h Mpc–1, the fit performs slightly worse on equilateral configurations, in agreement with expectations that for a given maximum k, equilateral triangles are the most nonlinear.

  12. LUMINOUS RED GALAXY HALO DENSITY FIELD RECONSTRUCTION AND APPLICATION TO LARGE-SCALE STRUCTURE MEASUREMENTS

    SciTech Connect

    Reid, Beth A.; Spergel, David N.; Bode, Paul E-mail: dns@astro.princeton.edu

    2009-09-01

    The nontrivial relationship between observations of galaxy positions in redshift space and the underlying matter field complicates our ability to determine the linear theory power spectrum and extract cosmological information from galaxy surveys. The Sloan Digital Sky Survey (SDSS) luminous red galaxy (LRG) catalog has the potential to place powerful constraints on cosmological parameters. LRGs are bright, highly biased tracers of large-scale structure. However, because they are highly biased, the nonlinear contribution of satellite galaxies to the galaxy power spectrum is large and fingers-of-God (FOGs) are significant. The combination of these effects leads to a {approx}10% correction in the underlying power spectrum at k = 0.1 h Mpc{sup -1} and {approx}40% correction at k = 0.2 h Mpc{sup -1} in the LRG P(k) analysis of Tegmark et al., thereby compromising the cosmological constraints when this potentially large correction is left as a free parameter. We propose an alternative approach to recovering the matter field from galaxy observations. Our approach is to use halos rather than galaxies to trace the underlying mass distribution. We identify FOGs and replace each FOG with a single halo object. This removes the nonlinear contribution of satellite galaxies, the one-halo term. We test our method on a large set of high-fidelity mock SDSS LRG catalogs and find that the power spectrum of the reconstructed halo density field deviates from the underlying matter power spectrum at the {<=}1% level for k {<=} 0.1 h Mpc{sup -1} and {<=}4% at k = 0.2 h Mpc{sup -1}. The reconstructed halo density field also removes the bias in the measurement of the redshift space distortion parameter {beta} induced by the FOG smearing of the linear redshift space distortions.

  13. A Bayesian Estimate of the CMB-Large-scale Structure Cross-correlation

    NASA Astrophysics Data System (ADS)

    Moura-Santos, E.; Carvalho, F. C.; Penna-Lima, M.; Novaes, C. P.; Wuensche, C. A.

    2016-08-01

    Evidences for late-time acceleration of the universe are provided by multiple probes, such as Type Ia supernovae, the cosmic microwave background (CMB), and large-scale structure (LSS). In this work, we focus on the integrated Sachs-Wolfe (ISW) effect, i.e., secondary CMB fluctuations generated by evolving gravitational potentials due to the transition between, e.g., the matter and dark energy (DE) dominated phases. Therefore, assuming a flat universe, DE properties can be inferred from ISW detections. We present a Bayesian approach to compute the CMB-LSS cross-correlation signal. The method is based on the estimate of the likelihood for measuring a combined set consisting of a CMB temperature and galaxy contrast maps, provided that we have some information on the statistical properties of the fluctuations affecting these maps. The likelihood is estimated by a sampling algorithm, therefore avoiding the computationally demanding techniques of direct evaluation in either pixel or harmonic space. As local tracers of the matter distribution at large scales, we used the Two Micron All Sky Survey galaxy catalog and, for the CMB temperature fluctuations, the ninth-year data release of the Wilkinson Microwave Anisotropy Probe (WMAP9). The results show a dominance of cosmic variance over the weak recovered signal, due mainly to the shallowness of the catalog used, with systematics associated with the sampling algorithm playing a secondary role as sources of uncertainty. When combined with other complementary probes, the method presented in this paper is expected to be a useful tool to late-time acceleration studies in cosmology.

  14. Mapping Dark Matter and Large Scale Structure with a MIDEX mission

    NASA Astrophysics Data System (ADS)

    Jahoda, K.; Petre, R.; Mushotzky, R. F.; Gendreau, K.; White, N. E.

    2001-05-01

    We present a MIDEX mission concept, on behalf of an international collaboartion, with the capability of answering numerous fundamental questions about the dark matter which dominates the gravitational mass of the universe, including: How much dark matter is there? What is its spatial distribution? Is the large scale structure that is observed today the result of gravitational instabilities (as assumed by all current theories)? The basis of our concept is an X-ray survey of π sr with the following characteristics: 0.5-10 keV bandpass, 10 arc-sec angular resolution, and (50 photon) flux limit 5 x 10-14 erg/s/cm2 (0.5-2 keV band). The X-ray data will be of sufficient quality to separate the primary dark matter tracers - clusters of galaxies - from the background population of AGN; the mission observation strategy will minimize the time required to measure the third dimension, redshift, by concentrating on the Sloan Digital Sky Survey region, thus performing a large fraction of the optical "follow-up" in advance. Based on the observed log N-log S distribution for clusters, we expect to detect substantially more than 104 clusters of galaxies.

  15. Measuring Large-Scale Structure at z ~ 1 with the VIPERS galaxy survey

    NASA Astrophysics Data System (ADS)

    Guzzo, Luigi

    2016-10-01

    The VIMOS Public Extragalactic Redshift Survey (VIPERS) is the largest redshift survey ever conducted with the ESO telescopes. It has used the Very Large Telescope to collect nearly 100,000 redshifts from the general galaxy population at 0.5 < z < 1.2. With a combination of volume and high sampling density that is unique for these redshifts, it allows statistical measurements of galaxy clustering and related cosmological quantities to be obtained on an equal footing with classic results from local redshift surveys. At the same time, the simple magnitude-limited selection and the wealth of ancillary photometric data provide a general view of the galaxy population, its physical properties and the relation of the latter to large-scale structure. This paper presents an overview of the galaxy clustering results obtained so far, together with their cosmological implications. Most of these are based on the ~ 55,000 galaxies forming the first public data release (PDR-1). As of January 2015, observations and data reduction are complete and the final data set of more than 90,000 redshifts is being validated and made ready for the final investigations.

  16. Horizon Run 4 Simulation: Coupled Evolution of Galaxies and Large-Scale Structures of the Universe

    NASA Astrophysics Data System (ADS)

    Kim, Juhan; Park, Changbom; L'Huillier, Benjamin; Hong, Sungwook E.

    2015-08-01

    The Horizon Run 4 is a cosmological N-body simulation designed for the study of coupled evolution between galaxies and large-scale structures of the Universe, and for the test of galaxy formation models. Using 6300^3 gravitating particles in a cubic box of L_{box} = 3150 h^{-1} Mpc, we build a dense forest of halo merger trees to trace the halo merger history with a halo mass resolution scale down to M_s = 2.7 × 10^{11} h^{-1} M_⊙. We build a set of particle and halo data, which can serve as testbeds for comparison of cosmological models and gravitational theories with observations. We find that the FoF halo mass function shows a substantial deviation from the universal form with tangible redshift evolution of amplitude and shape. At higher redshifts, the amplitude of the mass function is lower, and the functional form is shifted toward larger values of ln (1/σ). We also find that the baryonic acoustic oscillation feature in the two-point correlation funct-ion of mock galaxies becomes broader with a peak position moving to smaller scales and the peak amplitude decreasing for increasing directional cosine mu compared to the linear predictions. From the halo merger trees built from halo data at 75 redshifts, we measure the half-mass epoch of halos and find that less massive halos tend to reach half of their current mass at higher redshifts. Simulation outputs including snapshot data, past lightcone space data, and halo merger data are available at http://sdss.kias.re.kr/astro/Horizon-Run4

  17. A transient FETI methodology for large-scale parallel implicit computations in structural mechanics, part 2

    NASA Technical Reports Server (NTRS)

    Farhat, Charbel; Crivelli, Luis

    1993-01-01

    Explicit codes are often used to simulate the nonlinear dynamics of large-scale structural systems, even for low frequency response, because the storage and CPU requirements entailed by the repeated factorizations traditionally found in implicit codes rapidly overwhelm the available computing resources. With the advent of parallel processing, this trend is accelerating because explicit schemes are also easier to parallellize than implicit ones. However, the time step restriction imposed by the Courant stability condition on all explicit schemes cannot yet and perhaps will never be offset by the speed of parallel hardware. Therefore, it is essential to develop efficient and robust alternatives to direct methods that are also amenable to massively parallel processing because implicit codes using unconditionally stable time-integration algorithms are computationally more efficient than explicit codes when simulating low-frequency dynamics. Here we present a domain decomposition method for implicit schemes that requires significantly less storage than factorization algorithms, that is several times faster than other popular direct and iterative methods, that can be easily implemented on both shared and local memory parallel processors, and that is both computationally and communication-wise efficient. The proposed transient domain decomposition method is an extension of the method of Finite Element Tearing and Interconnecting (FETI) developed by Farhat and Roux for the solution of static problems. Serial and parallel performance results on the CRAY Y-MP/8 and the iPSC-860/128 systems are reported and analyzed for realistic structural dynamics problems. These results establish the superiority of the FETI method over both the serial/parallel conjugate gradient algorithm with diagonal scaling and the serial/parallel direct method, and contrast the computational power of the iPSC-860/128 parallel processor with that of the CRAY Y-MP/8 system.

  18. A transient FETI methodology for large-scale parallel implicit computations in structural mechanics

    NASA Technical Reports Server (NTRS)

    Farhat, Charbel; Crivelli, Luis; Roux, Francois-Xavier

    1992-01-01

    Explicit codes are often used to simulate the nonlinear dynamics of large-scale structural systems, even for low frequency response, because the storage and CPU requirements entailed by the repeated factorizations traditionally found in implicit codes rapidly overwhelm the available computing resources. With the advent of parallel processing, this trend is accelerating because explicit schemes are also easier to parallelize than implicit ones. However, the time step restriction imposed by the Courant stability condition on all explicit schemes cannot yet -- and perhaps will never -- be offset by the speed of parallel hardware. Therefore, it is essential to develop efficient and robust alternatives to direct methods that are also amenable to massively parallel processing because implicit codes using unconditionally stable time-integration algorithms are computationally more efficient when simulating low-frequency dynamics. Here we present a domain decomposition method for implicit schemes that requires significantly less storage than factorization algorithms, that is several times faster than other popular direct and iterative methods, that can be easily implemented on both shared and local memory parallel processors, and that is both computationally and communication-wise efficient. The proposed transient domain decomposition method is an extension of the method of Finite Element Tearing and Interconnecting (FETI) developed by Farhat and Roux for the solution of static problems. Serial and parallel performance results on the CRAY Y-MP/8 and the iPSC-860/128 systems are reported and analyzed for realistic structural dynamics problems. These results establish the superiority of the FETI method over both the serial/parallel conjugate gradient algorithm with diagonal scaling and the serial/parallel direct method, and contrast the computational power of the iPSC-860/128 parallel processor with that of the CRAY Y-MP/8 system.

  19. Comparison of large-scale structures and velocities in the local universe

    NASA Technical Reports Server (NTRS)

    Yahil, Amos

    1994-01-01

    Comparison of the large-scale density and velocity fields in the local universe shows detailed agreement, strengthening the standard paradigm of the gravitational origin of these structures. Quantitative analysis can determine the cosmological density parameter, Omega, and biasing factor, b; there is virtually no sensitivity in any local analyses to the cosmologial constant, lambda. Comparison of the dipole anisotropy of the cosmic microwave background with the acceleration due to the Infrared Astronomy Satellite (IRAS) galaxies puts the linear growth factor in the range beta approximately equals Omega (exp 0.6)/b = 0.6(+0.7/-0.3) (95% confidence). A direct comparison of the density and velocity fields of nearby galaxies gives beta = 1.3 (+0.7/-0.6), and from nonlinear analysis the weaker limit (Omega greater than 0.45 for b greater than 0.5 (again 95% confidence). A tighter limit (Omega greater than 0.3 (4-6 sigma)), is obtained by a reconstruction of the probability distribution function of the initial fluctuations from which the structures observed today arose. The last two methods depend critically on the smooth velocity field determined from the observed velocities of nearby galaxies by the POTENT method. A new analysis of these velocities, with more than three times the data used to obtain the above quoted results, is now underway and promises to tighten the uncertainties considerably, as well as reduce systematic bias.

  20. Systematic Effects on the Genus Topology of the Large-scale Structure of the Universe

    NASA Astrophysics Data System (ADS)

    Kim, Young-Rae; Choi, Yun-Young; Kim, Sungsoo S.; Kim, Kap-Sung; Lee, Jeong-Eun; Shin, Jihye; Kim, Minbae

    2014-06-01

    The large-scale structure of the universe is a useful cosmological probe of primordial non-Gaussianity and the expansion history of the universe because its topology does not change with time in the linear regime in the standard paradigm of structure formation. However, when the topology of iso-density contour surfaces is measured from observational data, many systematic effects are introduced due to the finite size of pixels used to define the density field, nonlinear gravitational evolution, redshift space distortion, shot noise (discrete sampling), and bias in the distribution of the density field tracers. We study the various systematic effects on the genus curve to a great accuracy by using the Horizon Run 2 simulation of a ΛCDM cosmology. We numerically measure the genus curve from the gravitationally evolved matter and dark matter halo density fields. It is found that all the non-Gaussian deviations due to systematic effects can be modeled by using a few low-order Hermite polynomials from H 0 to H 4. We compare our results with analytic theories whenever possible, and find many new terms in the Hermite series that are making significant contributions to the non-Gaussian deviations. In particular, it is found that the amplitude drop of the genus curve due to the nonlinear gravitational evolution can be accurately modeled by two terms, H 0 and H 2, with both coefficients proportional to \\sigma _0^2, the mean-square density fluctuation.

  1. Large scale structures in a turbulent boundary layer and their imprint on wall shear stress

    NASA Astrophysics Data System (ADS)

    Pabon, Rommel; Barnard, Casey; Ukeiley, Lawrence; Sheplak, Mark

    2015-11-01

    Experiments were performed on a turbulent boundary layer developing on a flat plate model under zero pressure gradient flow. A MEMS differential capacitive shear stress sensor with a 1 mm × 1 mm floating element was used to capture the fluctuating wall shear stress simultaneously with streamwise velocity measurements from a hot-wire anemometer traversed in the wall normal direction. Near the wall, the peak in the cross correlation corresponds to an organized motion inclined 45° from the wall. In the outer region, the peak diminishes in value, but is still significant at a distance greater than half the boundary layer thickness, and corresponds to a structure inclined 14° from the wall. High coherence between the two signals was found for the low-frequency content, reinforcing the belief that large scale structures have a vital impact on wall shear stress. Thus, estimation of the wall shear stress from the low-frequency velocity signal will be performed, and is expected to be statistically significant in the outer boundary layer. Additionally, conditionally averaged mean velocity profiles will be presented to assess the effects of high and low shear stress. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. DGE-1315138.

  2. Neural Schematics as a unified formal graphical representation of large-scale Neural Network Structures.

    PubMed

    Ehrlich, Matthias; Schüffny, René

    2013-01-01

    One of the major outcomes of neuroscientific research are models of Neural Network Structures (NNSs). Descriptions of these models usually consist of a non-standardized mixture of text, figures, and other means of visual information communication in print media. However, as neuroscience is an interdisciplinary domain by nature, a standardized way of consistently representing models of NNSs is required. While generic descriptions of such models in textual form have recently been developed, a formalized way of schematically expressing them does not exist to date. Hence, in this paper we present Neural Schematics as a concept inspired by similar approaches from other disciplines for a generic two dimensional representation of said structures. After introducing NNSs in general, a set of current visualizations of models of NNSs is reviewed and analyzed for what information they convey and how their elements are rendered. This analysis then allows for the definition of general items and symbols to consistently represent these models as Neural Schematics on a two dimensional plane. We will illustrate the possibilities an agreed upon standard can yield on sampled diagrams transformed into Neural Schematics and an example application for the design and modeling of large-scale NNSs. PMID:24167490

  3. Large-Scale Structures in the Zone of Avoidance: The Galactic Anticenter Region

    NASA Technical Reports Server (NTRS)

    Lu, Nanyao Y.; Freudling, Wolfram

    1995-01-01

    We have selected a sample of 876 galaxy candidates from the IRAS Point Source Catalog in the region of 2(exp h) < alpha < 10(exp h) and 0 deg < delta < 36 deg, which crosses the Galactic anticenter part of the Zone of Avoidance (ZOA) and includes most of the highly obscured Orion-Taurus complex region. We have identified galaxies among the candidate sources by attempting to detect the 21 cm H I line of those sources which were not known to be galaxies at the beginning of the survey. In this manner, we constructed a galaxy sample which is largely free from Galactic reddening. Of the 272 observed candidates, 89 were detected in the H I line up to a heliocentric velocity of v(sub h) approximately 16,000 km/s. The resulting galaxy sample of 717 galaxies is fairly complete (within about 10%) and uniform (within about 4%) in the part of the survey area 10 deg away from the Galactic plane and for velocities up to at least 9000 km/s. This provides, for the first time, a largely unbiased view on the large-scale structures in much of the survey area. Our main results are the following: (1) Several large voids are identified. In particular, a void between alpha approximately equals 3(sup h) and 4(sup h), up to v(sub h) approximately 6000 km/s, separates the Pisces-Perseus supercluster at alpha < 3(sup h) from structures at alpha > 4(sup h); and a "nearby void" occupies most of our survey area and reaches out to a redshift of nearly 3000 km/s. (2) We found no nearby galaxy concentration that could significantly contribute to the "Local Velocity Anomoly" (LVA), but a general excess of galaxies around v(sub h) approximately 5000 km/s in the survey area. (3) The contrast between the "Great Wall" at v(sub h) approximately 8500 km/s and the void in front of it appears to gradually diffuse out after it enters the Zone of Avoidance from the northern Galactic hemisphere. (4) Our data combined with other galaxy surveys in or near the Galactic anticenter part of the ZOA suggest that the

  4. An Ag-grid/graphene hybrid structure for large-scale, transparent, flexible heaters

    NASA Astrophysics Data System (ADS)

    Kang, Junmo; Jang, Yonghee; Kim, Youngsoo; Cho, Seung-Hyun; Suhr, Jonghwan; Hong, Byung Hee; Choi, Jae-Boong; Byun, Doyoung

    2015-04-01

    Recently, carbon materials such as carbon nanotubes and graphene have been proposed as alternatives to indium tin oxide (ITO) for fabricating transparent conducting materials. However, obtaining low sheet resistance and high transmittance of these carbon materials has been challenging due to the intrinsic properties of the materials. In this paper, we introduce highly transparent and flexible conductive films based on a hybrid structure of graphene and an Ag-grid. Electrohydrodynamic (EHD) jet printing was used to produce a micro-scale grid consisting of Ag lines less than 10 μm wide. We were able to directly write the Ag-grid on a large-area graphene/flexible substrate due to the high conductivity of graphene. The hybrid electrode could be fabricated using hot pressing transfer and EHD jet printing in a non-vacuum, maskless, and low-temperature environment. The hybrid electrode offers an effective and simple route for achieving a sheet resistance as low as ~4 Ω per square with ~78% optical transmittance. Finally, we demonstrate that transparent flexible heaters based on the hybrid conductive films could be used in a vehicle or a smart window system.Recently, carbon materials such as carbon nanotubes and graphene have been proposed as alternatives to indium tin oxide (ITO) for fabricating transparent conducting materials. However, obtaining low sheet resistance and high transmittance of these carbon materials has been challenging due to the intrinsic properties of the materials. In this paper, we introduce highly transparent and flexible conductive films based on a hybrid structure of graphene and an Ag-grid. Electrohydrodynamic (EHD) jet printing was used to produce a micro-scale grid consisting of Ag lines less than 10 μm wide. We were able to directly write the Ag-grid on a large-area graphene/flexible substrate due to the high conductivity of graphene. The hybrid electrode could be fabricated using hot pressing transfer and EHD jet printing in a non

  5. Deep Imaging of large scale extensional structures in the SW South China Sea

    NASA Astrophysics Data System (ADS)

    Liang, Yao; Delescluse, Matthias; Wang, Jun; Pubellier, Manuel; Chamot-Rooke, Nicolas; Qiu, Yan; Savva, Dimitri; Meresse, Florian

    2016-04-01

    The South China Sea (SCS) is the largest marginal basin in SE Asia and exhibits hundreds of kilometres of extended continental crust on both conjugate margins. The structures and processes leading to the formation of the SCS are still debated at various levels (timing, mechanisms). A joint collaboration between French and Chinese scientists led to the acquisition of coincident refraction and reflection seismic data over the SW sub-basin. In 2011, a 1000-km-long refraction line was first shot using R/V Tan Bao and 50 Ocean Bottom Seismometers (OBS). Among the results was the homogeneous thickness (~12 km) of the thinned continental crust over hundreds of kilometres and the possible large scale normal faults rooting in a ductile lower crust which could explain the relatively flat Moho. The coincident multichannel seismic (MCS) profile is now available to us. The 1000-km-long MCS line was acquired using a ~7000 cu.in. tuned airgun array and 6 to 8 km long streamers. Here we focus on a 230-km-long section of the profile to the south of the V-shaped SW oceanic basin across Spratley Islands. Multiples attenuation and high density velocity analysis are performed to obtain a detailed imaging of the sediments and crust at depth. We apply pre-stack Kirchhoff time migration and superimpose the obtained reflectivity on the refraction velocity model. The processed section includes a basin bound by a large crustal normal fault already imaged in the refraction velocity model, although no information on the basement was used to model the refraction velocities. The results validate the interpretation of the refraction velocity lateral variations and emphasize the significant vertical offsets of the large scale normal faults. Deep crustal reflectivity may give additional hints at a lower crustal ductile flow. Future work will consist in using the geometry of the MCS profiles in the refraction velocity modelling and an attempt to use more advanced migration methods with the help of

  6. Dynamic arrest in charged colloidal systems exhibiting large-scale structural heterogeneities.

    PubMed

    Haro-Pérez, C; Rojas-Ochoa, L F; Castañeda-Priego, R; Quesada-Pérez, M; Callejas-Fernández, J; Hidalgo-Alvarez, R; Trappe, V

    2009-01-01

    Suspensions of charged liposomes are found to exhibit typical features of strongly repulsive fluid systems at short length scales, while exhibiting structural heterogeneities at larger length scales that are characteristic of attractive systems. We model the static structure factor of these systems using effective pair interaction potentials composed of a long-range attraction and a shorter range repulsion. Our modeling of the static structure yields conditions for dynamically arrested states at larger volume fractions, which we find to agree with the experimentally observed dynamics. PMID:19257245

  7. Dynamic arrest in charged colloidal systems exhibiting large-scale structural heterogeneities.

    PubMed

    Haro-Pérez, C; Rojas-Ochoa, L F; Castañeda-Priego, R; Quesada-Pérez, M; Callejas-Fernández, J; Hidalgo-Alvarez, R; Trappe, V

    2009-01-01

    Suspensions of charged liposomes are found to exhibit typical features of strongly repulsive fluid systems at short length scales, while exhibiting structural heterogeneities at larger length scales that are characteristic of attractive systems. We model the static structure factor of these systems using effective pair interaction potentials composed of a long-range attraction and a shorter range repulsion. Our modeling of the static structure yields conditions for dynamically arrested states at larger volume fractions, which we find to agree with the experimentally observed dynamics.

  8. Dynamic Arrest in Charged Colloidal Systems Exhibiting Large-Scale Structural Heterogeneities

    SciTech Connect

    Haro-Perez, C.; Callejas-Fernandez, J.; Hidalgo-Alvarez, R.; Rojas-Ochoa, L. F.; Castaneda-Priego, R.; Quesada-Perez, M.; Trappe, V.

    2009-01-09

    Suspensions of charged liposomes are found to exhibit typical features of strongly repulsive fluid systems at short length scales, while exhibiting structural heterogeneities at larger length scales that are characteristic of attractive systems. We model the static structure factor of these systems using effective pair interaction potentials composed of a long-range attraction and a shorter range repulsion. Our modeling of the static structure yields conditions for dynamically arrested states at larger volume fractions, which we find to agree with the experimentally observed dynamics.

  9. Error analysis and system implementation for structured light stereo vision 3D geometric detection in large scale condition

    NASA Astrophysics Data System (ADS)

    Qi, Li; Zhang, Xuping; Wang, Jiaqi; Zhang, Yixin; Wang, Shun; Zhu, Fan

    2012-11-01

    Stereo vision based 3D metrology technique is an effective approach for relatively large scale object's 3D geometric detection. In this paper, we present a specified image capture system, which implements LVDS interface embedded CMOS sensor and CAN bus to ensure synchronous trigger and exposure. We made an error analysis for structured light vision measurement in large scale condition, based on which we built and tested the system prototype both indoor and outfield. The result shows that the system is very suitable for large scale metrology applications.

  10. Large-scale determination of previously unsolved protein structures using evolutionary information.

    PubMed

    Ovchinnikov, Sergey; Kinch, Lisa; Park, Hahnbeom; Liao, Yuxing; Pei, Jimin; Kim, David E; Kamisetty, Hetunandan; Grishin, Nick V; Baker, David

    2015-01-01

    The prediction of the structures of proteins without detectable sequence similarity to any protein of known structure remains an outstanding scientific challenge. Here we report significant progress in this area. We first describe de novo blind structure predictions of unprecendented accuracy we made for two proteins in large families in the recent CASP11 blind test of protein structure prediction methods by incorporating residue-residue co-evolution information in the Rosetta structure prediction program. We then describe the use of this method to generate structure models for 58 of the 121 large protein families in prokaryotes for which three-dimensional structures are not available. These models, which are posted online for public access, provide structural information for the over 400,000 proteins belonging to the 58 families and suggest hypotheses about mechanism for the subset for which the function is known, and hypotheses about function for the remainder. PMID:26335199

  11. A Strong-Lens Survey in AEGIS: the Influence of Large Scale Structure

    SciTech Connect

    Moustakas, Leonidas A.; Marshall, Phil J.; Newman, Jeffrey A.; Coil, Alison L.; Cooper, Michael C.; Davis, Marc; Fassnacht, Christopher D.; Guhathakurta, Puragra; Hopkins, Andrew; Koekemoer, Anton; Konidaris, Nicholas P.; Lotz, Jennifer M.; Willmer, Christopher N.A.; /Arizona U., Astron. Dept. - Steward Observ.

    2006-07-14

    We report on the results of a visual search for galaxy-scale strong gravitational lenses over 650 arcmin2 of HST/ACS imaging in the Extended Groth Strip (EGS). These deep F606W- and F814W-band observations are in the DEEP2-EGS field. In addition to a previously-known Einstein Cross also found by our search (the ''Cross'', HSTJ141735+52264, with z{sub lens} = 0.8106 and a published z{sub source} = 3.40), we identify two new strong galaxy-galaxy lenses with multiple extended arcs. The first, HSTJ141820+52361 (the ''Dewdrop''; z{sub lens} = 0.5798), lenses two distinct extended sources into two pairs of arcs (z{sub source} = 0.9818 by nebular [O{sub II}] emission), while the second, HSTJ141833+52435 (the ''Anchor''; z{sub lens} = 0.4625), produces a single pair of arcs (source redshift not yet known). Four less convincing arc/counter-arc and two-image lens candidates are also found and presented for completeness. All three definite lenses are fit reasonably well by simple singular isothermal ellipsoid models including external shear, giving {chi}{sub {nu}}{sup 2}values close to unity. Using the three-dimensional line-of-sight (LOS) information on galaxies from the DEEP2 data, we calculate the convergence and shear contributions {kappa}{sub los} and {gamma}{sub los} to each lens, assuming singular isothermal sphere halos truncated at 200 h{sup -1} kpc. These are compared against a robust measure of local environment, {delta}{sub 3}, a normalized density that uses the distance to the third nearest neighbor. We find that even strong lenses in demonstrably underdense local environments may be considerably affected by LOS contributions, which in turn, under the adopted assumptions, may be underestimates of the effect of large scale structure.

  12. The EFT of Large Scale Structures at all redshifts: analytical predictions for lensing

    NASA Astrophysics Data System (ADS)

    Foreman, Simon; Senatore, Leonardo

    2016-04-01

    We study the prediction of the Effective Field Theory of Large Scale Structures (EFTofLSS) for the matter power spectrum at different redshifts. In previous work, we found that the two-loop prediction can match the nonlinear power spectrum measured from N-body simulations at redshift zero within approximately 2% up to k~ 0.6 h Mpc-1 after fixing a single free parameter, the so-called "speed of sound". We determine the time evolution of this parameter by matching the EFTofLSS prediction to simulation output at different redshifts, and find that it is well-described by a fitting function that only includes one additional parameter. After the two free parameters are fixed, the prediction agrees with nonlinear data within approximately 2% up to at least k~ 1 h Mpc-1 at z>= 1, and also within approximately 5% up to k~ 1.2 h Mpc-1 at z=1 and k~ 2.3 h Mpc-1 at z=3, a major improvement with respect to other perturbative techniques. We also develop an accurate way to estimate where the EFTofLSS predictions at different loop orders should fail, based on the sizes of the next-order terms that are neglected, and find agreement with the actual comparisons to data. Finally, we use our matter power spectrum results to perform analytical calculations of lensing potential power spectra corresponding to both CMB and galaxy lensing. This opens the door to future direct applications of the EFTofLSS to observations of gravitational clustering on cosmic scales.

  13. Is there evidence for anomalous dipole anisotropy in the large-scale structure?

    NASA Astrophysics Data System (ADS)

    Bengaly, C. A. P.; Bernui, A.; Alcaniz, J. S.; Xavier, H. S.; Novaes, C. P.

    2016-09-01

    We probe the anisotropy of the large-scale structure (LSS) with the WISE-2MASS catalogue. This analysis is performed by a directional comparison of the galaxy number counts through the entire celestial sphere once systematic effects, such as star-galaxy separation and foregrounds contamination, are properly taken into account. We find a maximal hemispherical asymmetry whose dipolar component is A = 0.0507 ± 0.0014 toward the (l, b) = (323°, -5°) direction, whose result is consistent with previous estimations of our proper motion in low and intermediate redshifts, as those carried out with Type Ia Supernovae and similar LSS catalogues. Furthermore, this dipole amplitude is statistically consistent (p-value = 0.061) with mock catalogues simulated according to the expected ΛCDM matter density fluctuations, in addition to observational biases such as the incomplete celestial coverage and anisotropic sky exposure. Our results suggest, therefore, that there is no strong evidence for anomalous anisotropy in the LSS, given the limitations and systematics of current data, in the concordance model scenario.

  14. Unifying Algebraic and Large-Scale Shell-Model Approaches in Nuclear Structure Calculations

    NASA Astrophysics Data System (ADS)

    Draayer, Jerry P.

    1997-04-01

    The shell model is the most robust theory for addressing nuclear structure questions. Unfortunately, it is only as good as the input hamiltonian and the appropriateness of the selected model space, and both of these elements usually prove to be a significant challenge. There are three basic theories: 1) algebraic models, boson and fermion, which focus on symmetries, exact and approximate, of a hamiltonian and usually use model spaces that are severely truncated; 2) numerically oriented schemes that accommodate larger spaces but rely on special techniques and algorithms for producing convergent results; and 3) models that employ statistical concepts, like statistical spectroscopy of the 70s and 80s and Monte Carlo methods of the 90s, schemes that are not limited by the usual dimensionality considerations. These three approaches and their various realizations and extensions, with their pluses and minuses, will be considered. In addition, opportunities that exist for defining a scheme that employs the best of all three approaches to yield a symmetry adapted theory that is not limited to simplified spaces and hamiltonians and yet remains tractable even for large-scale calculations of the type that are required for testing a theory against experimental data and for predicting new physical phenomena will be explored. Special attention will be focused on unifying themes linking the shell-model with the simpler and yet highly successful mean-field and collective-model theories. As a example of the latter, some recent results using the symplectic shell model will be presented.

  15. An Ag-grid/graphene hybrid structure for large-scale, transparent, flexible heaters.

    PubMed

    Kang, Junmo; Jang, Yonghee; Kim, Youngsoo; Cho, Seung-Hyun; Suhr, Jonghwan; Hong, Byung Hee; Choi, Jae-Boong; Byun, Doyoung

    2015-04-21

    Recently, carbon materials such as carbon nanotubes and graphene have been proposed as alternatives to indium tin oxide (ITO) for fabricating transparent conducting materials. However, obtaining low sheet resistance and high transmittance of these carbon materials has been challenging due to the intrinsic properties of the materials. In this paper, we introduce highly transparent and flexible conductive films based on a hybrid structure of graphene and an Ag-grid. Electrohydrodynamic (EHD) jet printing was used to produce a micro-scale grid consisting of Ag lines less than 10 μm wide. We were able to directly write the Ag-grid on a large-area graphene/flexible substrate due to the high conductivity of graphene. The hybrid electrode could be fabricated using hot pressing transfer and EHD jet printing in a non-vacuum, maskless, and low-temperature environment. The hybrid electrode offers an effective and simple route for achieving a sheet resistance as low as ∼4 Ω per square with ∼78% optical transmittance. Finally, we demonstrate that transparent flexible heaters based on the hybrid conductive films could be used in a vehicle or a smart window system.

  16. The Large Scale Structure of the Galactic Magnetic Field and High Energy Cosmic Ray Anisotropy

    NASA Astrophysics Data System (ADS)

    Alvarez-Muñiz, Jaime; Stanev, Todor

    2006-10-01

    Measurements of the magnetic field in our Galaxy are complex and usually difficult to interpret. A spiral regular field in the disk is favored by observations, however the number of field reversals is still under debate. Measurements of the parity of the field across the Galactic plane are also very difficult due to the presence of the disk field itself. In this work we demonstrate that cosmic ray protons in the energy range 1018 to 1019eV, if accelerated near the center of the Galaxy, are sensitive to the large scale structure of the Galactic Magnetic Field (GMF). In particular if the field is of even parity, and the spiral field is bi-symmetric (BSS), ultra high energy protons will predominantly come from the Southern Galactic hemisphere, and predominantly from the Northern Galactic hemisphere if the field is of even parity and axi-symmetric (ASS). There is no sensitivity to the BSS or ASS configurations if the field is of odd parity.

  17. THE COSMIC HISTORY OF THE SPIN OF DARK MATTER HALOS WITHIN THE LARGE-SCALE STRUCTURE

    SciTech Connect

    Trowland, Holly E.; Lewis, Geraint F.; Bland-Hawthorn, Joss

    2013-01-10

    We use N-body simulations to investigate the evolution of the orientation and magnitude of dark matter halo angular momentum within the large-scale structure since z = 3. We look at the evolution of the alignment of halo spins with filaments and with each other, as well as the spin parameter, which is a measure of the magnitude of angular momentum. It was found that the angular momentum vectors of dark matter halos at high redshift have a weak tendency to be orthogonal to filaments and high-mass halos have a stronger orthogonal alignment than low-mass halos. Since z = 1, the spins of low-mass halos have become weakly aligned parallel to filaments, whereas high-mass halos kept their orthogonal alignment. This recent parallel alignment of low-mass halos casts doubt on tidal torque theory as the sole mechanism for the buildup of angular momentum. We see evidence for bulk flows and the broadening of filaments over time in the alignments of halo spin and velocities. We find a significant alignment of the spin of neighboring dark matter halos only at very small separations, r < 0.3 Mpc h {sup -1}, which is driven by substructure. A correlation of the spin parameter with halo mass is confirmed at high redshift.

  18. Hierarchical system for autonomous sensing-healing of delamination in large-scale composite structures

    NASA Astrophysics Data System (ADS)

    Minakuchi, Shu; Sun, Denghao; Takeda, Nobuo

    2014-10-01

    This study combines our hierarchical fiber-optic-based delamination detection system with a microvascular self-healing material to develop the first autonomous sensing-healing system applicable to large-scale composite structures. In this combined system, embedded vascular modules are connected through check valves to a surface-mounted supply tube of a pressurized healing agent while fiber-optic-based sensors monitor the internal pressure of these vascular modules. When delamination occurs, the healing agent flows into the vascular modules breached by the delamination and infiltrates the damage for healing. At the same time, the pressure sensors identify the damaged modules by detecting internal pressure changes. This paper begins by describing the basic concept of the combined system and by discussing the advantages that arise from its hierarchical nature. The feasibility of the system is then confirmed through delamination infiltration tests. Finally, the hierarchical system is validated in a plate specimen by focusing on the detection and infiltration of the damage. Its self-diagnostic function is also demonstrated.

  19. A new largeScale synthesis of magnesium oxide nanowires: Structural and antibacterial properties

    PubMed Central

    Al-Hazmi, Faten; Alnowaiser, Fowzia; Al-Ghamdi, A.A.; Al-Ghamdi, Attieh A.; Aly, M.M.; Al-Tuwirqi, Reem M.; El-Tantawy, Farid

    2012-01-01

    Large-scale one-dimensional magnesium oxide (MgO) nanowires with diameters of 6 nm and lengths of 10 μm have been successfully synthesized by a new facile and simple reaction. This production was performed via a microwave hydrothermal approach at low temperature growth of 180 °C for 30 min. The structure of as synthesized MgO nanowires were investigated by means of X-ray diffraction (X-ray), Fourier Transformation Infrared Spectroscopy (FTIR), Field Emission Scanning Electron Microscopy (FE-SEM), Transmission Electron Microscopy (TEM), Selected Area Electron Diffraction (SAED) and Energy Dispersive X-ray (EDS). The antibacterial behavior of MgO nanowires concentration in solid media against Gram negative and Gram positive for different bacteria has been tested in details. The results show that the MgO nanowires have bacteriostatic activity against Escherichia coli and Bacillus sp. The antibacterial activity increases with increasing MgO nanowires concentration. Furthermore, the presence of one-dimensional MgO nanowires has high antibacterial efficacy and damages the membrane wall of bacteria. Finally, this study offered the prospect of developing ultrafine nanoscale devices utilizing MgO nanowires and implementing their useful potential in biological control. PMID:24748719

  20. Systematic effects of local large scale structure on the measured expansion history of the universe

    NASA Astrophysics Data System (ADS)

    Vanderveld, Riva Ashley

    2007-10-01

    We discuss some of the ways that local cosmological inhomogeneity has been found to affect our interpretation of the measurements of the redshifts and luminosity distances of Type la supernovae, so that we may ask: Can a matter dominated universe, with gravity governed by general relativity, appear to be accelerating? This discussion focuses on the systematic corrections to measured cosmological parameters that one would find as a result of the "fitting problem", wherein the fitting of data to what we would see in a homogeneous universe introduces errors due to the nonlinearity of general relativity. It has been suggested that this fitting effect could explain the supernova data without introducing dark energy or modifications of general relativity. We explore this claim within the context of several cosmological scenarios, all of which use standard general relativity and are dust dominated, with no dark energy. First, we use the spherically-symmetric Lemaître-Tolman-Bondi cosmological models, then we look at a simple model for cosmological voids and sheets, and finally we treat the problem in full three dimensional generality. In each of these contexts, we analyze the systematic corrections to the luminosity distances and redshifts of Type Ia supernovae that result from local large scale structure. We then find how such corrections affect the properties of the Universe that we infer from this measured luminosity distance-redshift relation. We show how, in principle, a very large degree of inhomogeneity can trick us into thinking that the expansion of the Universe is accelerating when it is not. However, within the confines of more realistic models, such effects are shown to be small. In the full three dimensional case, we find that the error in the best-fit cosmological constant is approximately DO L [approximate] 0.004 for a large sample of supernovae at small redshifts, between z min = 0.02 and z max = 0.15. Although this error is not large enough to explain

  1. A Confirmatory Approach to Examining the Factor Structure of the Strengths and Difficulties Questionnaire (SDQ): A Large Scale Cohort Study

    ERIC Educational Resources Information Center

    Niclasen, Janni; Skovgaard, Anne Mette; Andersen, Anne-Marie Nybo; Somhovd, Mikael Julius; Obel, Carsten

    2013-01-01

    The aim of this study was to examine the factor structure of the Strengths and Difficulties Questionnaire (SDQ) using a Structural Confirmatory Factor Analytic approach. The Danish translation of the SDQ was distributed to 71,840 parents and teachers of 5-7 and 10-12-year-old boys and girls from four large scale cohorts. Three theoretical models…

  2. High Energy Particles, Shock Waves and Magnetic Fields in the Large Scale Structure of the Universe

    NASA Astrophysics Data System (ADS)

    Miniati, Francesco

    2000-11-01

    We have investigated acceleration of high energy cosmic rays in association with process of large scale structure formation. For the first time we have carried out numerical simulations of cosmological structure formation including explicitly the injection, acceleration and energy losses of high energy ions and electrons. Secondary electrons produced in hadronic collisions of cosmic ray ions and thermal background nuclei were also included in the calculation. Furthermore, we follow the passive evolution of the magnetic field (i.e. no magnetic force is included), generated at cosmic shocks through the Biermann battery mechanism. We first study the properties of cosmic shocks where particle acceleration takes place and find that most of the kinetic energy is processed by relatively weak shocks with Mach number of order 3-5. One of the main results of this thesis is that cosmic ray ions produced at these shocks store up a significant fraction of the total energy density and pressure inside today's clusters of galaxies. Furthermore, the radio synchrotron emission from secondary electrons in our simulation reproduces many observed features of radio halos. This result may suggest the important possibility that radio halos are a consequence of high non-thermal activity taking place inside clusters of galaxies. The non-thermal HXR excess of radiation observed in Coma cluster and Abell 2199 can be partially produced by inverse Compton emission of both primary and secondary electrons accelerated in simulated clusters with corresponding temperature, as they scatter the cosmic microwave background photons. The same mechanism, however, now involving the low energy electrons of the same distributions, generates an EUV luminosity that is far below the observed values.

  3. Electronic structure and aromaticity of large-scale hexagonal graphene nanoflakes

    SciTech Connect

    Hu, Wei E-mail: linlin@lbl.gov E-mail: jlyang@ustc.edu.cn; Yang, Chao E-mail: linlin@lbl.gov E-mail: jlyang@ustc.edu.cn; Lin, Lin E-mail: linlin@lbl.gov E-mail: jlyang@ustc.edu.cn; Yang, Jinlong E-mail: linlin@lbl.gov E-mail: jlyang@ustc.edu.cn

    2014-12-07

    With the help of the recently developed SIESTA-pole (Spanish Initiative for Electronic Simulations with Thousands of Atoms) - PEXSI (pole expansion and selected inversion) method [L. Lin, A. García, G. Huhs, and C. Yang, J. Phys.: Condens. Matter 26, 305503 (2014)], we perform Kohn-Sham density functional theory calculations to study the stability and electronic structure of hydrogen passivated hexagonal graphene nanoflakes (GNFs) with up to 11 700 atoms. We find the electronic properties of GNFs, including their cohesive energy, edge formation energy, highest occupied molecular orbital-lowest unoccupied molecular orbital energy gap, edge states, and aromaticity, depend sensitively on the type of edges (armchair graphene nanoflakes (ACGNFs) and zigzag graphene nanoflakes (ZZGNFs)), size and the number of electrons. We observe that, due to the edge-induced strain effect in ACGNFs, large-scale ACGNFs’ edge formation energy decreases as their size increases. This trend does not hold for ZZGNFs due to the presence of many edge states in ZZGNFs. We find that the energy gaps E{sub g} of GNFs all decay with respect to 1/L, where L is the size of the GNF, in a linear fashion. But as their size increases, ZZGNFs exhibit more localized edge states. We believe the presence of these states makes their gap decrease more rapidly. In particular, when L is larger than 6.40 nm, we find that ZZGNFs exhibit metallic characteristics. Furthermore, we find that the aromatic structures of GNFs appear to depend only on whether the system has 4N or 4N + 2 electrons, where N is an integer.

  4. A New Lumped Structure Photochemical Mechanism for Large-Scale Applications

    SciTech Connect

    Zaveri, Rahul A.; Peters, Leonard K.

    1999-12-20

    The lumped-structure approach for condensing organic chemical mechanisms is attractive, since it yields fewer species and reactions, and reduces computational costs. This paper leads through the development of a new lumped-structure mechanism, largely based on the widely used Carbon Bond Mechanism (CBM-IV) developed by Gery et al.[1989]. The new mechanism called CBM-Z, extends the original framework to function properly at larger spatial and longer time scales. The major modifications in the mechanism include: revised inorganic chemistry; explicit treatment of the lesser reactive paraffins - methane and ethane; revised parameterizations of the reactive paraffin, olefin and aromatic reactions; inclusion of alkyl and acyl peroxy radical interactions and their reactions with NO3; inclusion of organic nitrates and hydroperoxides; and refined isoprene chemistry based on the condensed one-product mechanism of Carter[1996a,b]. CBM-Z was successfully evaluated along with the CBM-IV, a partially revised CBM-IV and a revised RADM2 mechanism[Stockwell et al., 1990; Kirchner and Stockwell, 1996] using the low VOC and NOx concentration smog chamber experiments of Simonaitis et al.[1997]. Box-model versions of the four mechanisms were also evaluated under a variety of hypothetical urban and rural scenarios for a period of 30 days. Results from CBM-Z and revised RADM2 were found to be within (+/-) 20% of each other, while CBM-IV and revised CBM-IV results deviated significantly by up to 50-95%. Sensitivity tests were performed to elucidate the effects of some of the new features added in CBM-Z. Relative computational memory and time requirements of these mechanisms are also discussed.

  5. Towards a self-consistent halo model for the nonlinear large-scale structure

    NASA Astrophysics Data System (ADS)

    Schmidt, Fabian

    2016-03-01

    The halo model is a theoretically and empirically well-motivated framework for predicting the statistics of the nonlinear matter distribution in the Universe. However, current incarnations of the halo model suffer from two major deficiencies: (i) they do not enforce the stress-energy conservation of matter; (ii) they are not guaranteed to recover exact perturbation theory results on large scales. Here, we provide a formulation of the halo model (EHM) that remedies both drawbacks in a consistent way, while attempting to maintain the predictivity of the approach. In the formulation presented here, mass and momentum conservation are guaranteed on large scales, and results of the perturbation theory and the effective field theory can, in principle, be matched to any desired order on large scales. We find that a key ingredient in the halo model power spectrum is the halo stochasticity covariance, which has been studied to a much lesser extent than other ingredients such as mass function, bias, and profiles of halos. As written here, this approach still does not describe the transition regime between perturbation theory and halo scales realistically, which is left as an open problem. We also show explicitly that, when implemented consistently, halo model predictions do not depend on any properties of low-mass halos that are smaller than the scales of interest.

  6. Shear wave velocity structure in North America from large-scale waveform inversions of surface waves

    USGS Publications Warehouse

    Alsina, D.; Woodward, R.L.; Snieder, R.K.

    1996-01-01

    A two-step nonlinear and linear inversion is carried out to map the lateral heterogeneity beneath North America using surface wave data. The lateral resolution for most areas of the model is of the order of several hundred kilometers. The most obvious feature in the tomographic images is the rapid transition between low velocities in the technically active region west of the Rocky Mountains and high velocities in the stable central and eastern shield of North America. The model also reveals smaller-scale heterogeneous velocity structures. A high-velocity anomaly is imaged beneath the state of Washington that could be explained as the subducting Juan de Fuca plate beneath the Cascades. A large low-velocity structure extends along the coast from the Mendocino to the Rivera triple junction and to the continental interior across the southwestern United States and northwestern Mexico. Its shape changes notably with depth. This anomaly largely coincides with the part of the margin where no lithosphere is consumed since the subduction has been replaced by a transform fault. Evidence for a discontinuous subduction of the Cocos plate along the Middle American Trench is found. In central Mexico a transition is visible from low velocities across the Trans-Mexican Volcanic Belt (TMVB) to high velocities beneath the Yucatan Peninsula. Two elongated low-velocity anomalies beneath the Yellowstone Plateau and the eastern Snake River Plain volcanic system and beneath central Mexico and the TMVB seem to be associated with magmatism and partial melting. Another low-velocity feature is seen at depths of approximately 200 km beneath Florida and the Atlantic Coastal Plain. The inversion technique used is based on a linear surface wave scattering theory, which gives tomographic images of the relative phase velocity perturbations in four period bands ranging from 40 to 150 s. In order to find a smooth reference model a nonlinear inversion based on ray theory is first performed. After

  7. Reorganisation of the large-scale structures in turbulent boundary layers using highly ordered and directional surface roughness

    NASA Astrophysics Data System (ADS)

    Kevin, -; Nugroho, Bagus; Pathikonda, Gokul; Barros, Julio; Christensen, Kenneth; Monty, Jason; Hutchins, Nicholas; UoM-UIUC riblets study Collaboration

    2014-11-01

    The potential of riblet-type surface roughness with converging-diverging (herring-bone type) arrangements to reorganise the large-scale coherent structures that populate the logarithmic region of turbulent boundary layers is investigated at moderate Reynolds number. The ability of this transitionally rough surface to generate large-scale counter rotating roll-modes suggests that a preferential arrangement of the naturally occurring large-scale structures may have been introduced. Prior analysis of the pre-multiplied energy spectra of streamwise velocity fluctuation indicates an increase (or decrease) in the large-scale streamwise turbulence energy over the converging region (or diverging) of the riblets. In this study we examine this possible spanwise redistribution of the coherent structures using instantaneous planar Particle Image Velocimetry (PIV) in the wall-parallel plane (within the logarithmic region) as well as cross-plane Stereoscopic PIV. The characteristics of the large-scale structure over the converging-diverging surface are compared with those of the corresponding smooth-wall case, revealing pronounced modification of the size, strength and alignment of these features over the directional surface. Collaboration between University of Melbourne and University of Illinois on converging-diverging riblets study.

  8. Photometric Redshifts for the Dark Energy Survey and VISTA and Implications for Large Scale Structure

    SciTech Connect

    Banerji, Manda; Abdalla, Filipe B.; Lahav, Ofer; Lin, Huan; /Fermilab

    2007-11-01

    We conduct a detailed analysis of the photometric redshift requirements for the proposed Dark Energy Survey (DES) using two sets of mock galaxy simulations and an artificial neural network code-ANNz. In particular, we examine how optical photometry in the DES grizY bands can be complemented with near infra-red photometry from the planned VISTA Hemisphere Survey (VHS) in the JHK{sub s} bands in order to improve the photometric redshift estimate by a factor of two at z > 1. We draw attention to the effects of galaxy formation scenarios such as reddening on the photo-z estimate and using our neural network code, calculate A{sub v} for these reddened galaxies. We also look at the impact of using different training sets when calculating photometric redshifts. In particular, we find that using the ongoing DEEP2 and VVDS-Deep spectroscopic surveys to calibrate photometric redshifts for DES, will prove effective. However we need to be aware of uncertainties in the photometric redshift bias that arise when using different training sets as these will translate into errors in the dark energy equation of state parameter, w. Furthermore, we show that the neural network error estimate on the photometric redshift may be used to remove outliers from our samples before any kind of cosmological analysis, in particular for large-scale structure experiments. By removing all galaxies with a 1{sigma} photo-z scatter greater than 0.1 from our DES+VHS sample, we can constrain the galaxy power spectrum out to a redshift of 2 and reduce the fractional error on this power spectrum by {approx}15-20% compared to using the entire catalogue.

  9. DEMNUni: the clustering of large-scale structures in the presence of massive neutrinos

    SciTech Connect

    Castorina, Emanuele; Carbone, Carmelita; Bel, Julien; Sefusatti, Emiliano; Dolag, Klaus E-mail: carmelita.carbone@brera.inaf.it E-mail: emiliano.sefusatti@brera.inaf.it

    2015-07-01

    We analyse the clustering features of Large Scale Structures (LSS) in the presence of massive neutrinos, employing a set of large-volume, high-resolution cosmological N-body simulations, where neutrinos are treated as separate collisionless particles. The volume of 8 h{sup -3} Gpc{sup 3}, combined with a resolution of about 8×10{sup 10}h{sup -1}M{sub ⊚} for the cold dark matter (CDM) component, represents a significant improvement over previous N-body simulations in massive neutrino cosmologies. In this work we focus, in the first place, on the analysis of nonlinear effects in CDM and neutrinos perturbations contributing to the total matter power spectrum. We show that most of the nonlinear evolution is generated exclusively by the CDM component. We therefore compare mildly nonlinear predictions from Eulerian Perturbation Theory (PT), and fully nonlinear prescriptions (HALOFIT) with the measurements obtained from the simulations. We find that accounting only for the nonlinear evolution of the CDM power spectrum allows to recover the total matter power spectrum with the same accuracy as the massless case. Indeed, we show that, the most recent version of the (HALOFIT) formula calibrated on ΛCDM simulations can be applied directly to the linear CDM power spectrum without requiring additional fitting parameters in the massive case. As a second step, we study the abundance and clustering properties of CDM halos, confirming that, in massive neutrino cosmologies, the proper definition of the halo bias should be made with respect to the cold rather than the total matter distribution, as recently shown in the literature. Here we extend these results to the redshift space, finding that, when accounting for massive neutrinos, an improper definition of the linear bias can lead to a systematic error of about 1-2 % in the determination of the linear growth rate from anisotropic clustering. This result is quite important if we consider that future spectroscopic galaxy

  10. Covariance of cross-correlations: towards efficient measures for large-scale structure

    NASA Astrophysics Data System (ADS)

    Smith, Robert E.

    2009-12-01

    We study the covariance of the cross-power spectrum of different tracers for the large-scale structure. We develop the counts-in-cells framework for the multitracer approach, and use this to derive expressions for the full non-Gaussian covariance matrix. We show that for the usual autopower statistic, besides the off-diagonal covariance generated through gravitational mode-coupling, the discreteness of the tracers and their associated sampling distribution can generate strong off-diagonal covariance, and that this becomes the dominant source of covariance as spatial frequencies become larger than the fundamental mode of the survey volume. On comparison with the derived expressions for the cross-power covariance, we show that the off-diagonal terms can be suppressed, if one cross-correlates a high tracer-density sample with a low one. Taking the effective estimator efficiency to be proportional to the signal-to-noise ratio (S/N), we show that, to probe clustering as a function of physical properties of the sample, i.e. cluster mass or galaxy luminosity, the cross-power approach can outperform the autopower one by factors of a few. We confront the theory with measurements of the mass-mass, halo-mass and halo-halo power spectra from a large ensemble of N-body simulations. We show that there is a significant S/N advantage to be gained from using the cross-power approach when studying the bias of rare haloes. The analysis is repeated in configuration space and again S/N improvement is found. We estimate the covariance matrix for these samples, and find strong off-diagonal contributions. The covariance depends on halo mass, with higher mass samples having stronger covariance. In agreement with theory, we show that the covariance is suppressed for the cross-power. This work points the way towards improved estimators for studying the clustering of tracers as a function of their physical properties.

  11. Observing trans-Planckian ripples in the primordial power spectrum with future large scale structure probes

    SciTech Connect

    Hamann, Jan; Hannestad, Steen; Sloth, Martin S; Wong, Yvonne Y Y E-mail: sth@phys.au.dk E-mail: ywong@mppmu.mpg.de

    2008-09-15

    We revisit the issue of ripples in the primordial power spectra caused by trans-Planckian physics, and the potential for their detection by future cosmological probes. We find that for reasonably large values of the first slow-roll parameter {epsilon} ({approx}>0.001), a positive detection of trans-Planckian ripples can be made even if the amplitude is as low as 10{sup -4}. Data from the Large Synoptic Survey Telescope (LSST) and the proposed future 21 cm survey with the Fast Fourier Transform Telescope (FFTT) will be particularly useful in this regard. If the scale of inflation is close to its present upper bound, a scale of new physics as high as {approx}0.2 M{sub P} could lead to observable signatures.

  12. Does lower Omega allow a resolution of the large-scale structure problem?

    NASA Technical Reports Server (NTRS)

    Silk, Joseph; Vittorio, Nicola

    1987-01-01

    The intermediate angular scale anisotropy of the cosmic microwave background, peculiar velocities, density correlations, and mass fluctuations for both neutrino and baryon-dominated universes with Omega less than one are evaluated. The large coherence length associated with a low-Omega, hot dark matter-dominated universe provides substantial density fluctuations on scales up to 100 Mpc: there is a range of acceptable models that are capable of producing large voids and superclusters of galaxies and the clustering of galaxy clusters, with Omega roughly 0.3, without violating any observational constraint. Low-Omega, cold dark matter-dominated cosmologies are also examined. All of these models may be reconciled with the inflationary requirement of a flat universe by introducing a cosmological constant 1-Omega.

  13. Clipping the cosmos: the bias and bispectrum of large scale structure.

    PubMed

    Simpson, Fergus; James, J Berian; Heavens, Alan F; Heymans, Catherine

    2011-12-30

    A large fraction of the information collected by cosmological surveys is simply discarded to avoid length scales which are difficult to model theoretically. We introduce a new technique which enables the extraction of useful information from the bispectrum of galaxies well beyond the conventional limits of perturbation theory. Our results strongly suggest that this method increases the range of scales where the relation between the bispectrum and power spectrum in tree-level perturbation theory may be applied, from k(max) ∼ 0.1 to ∼0.7 hMpc(-1). This leads to correspondingly large improvements in the determination of galaxy bias. Since the clipped matter power spectrum closely follows the linear power spectrum, there is the potential to use this technique to probe the growth rate of linear perturbations and confront theories of modified gravity with observation.

  14. Structure of CIMS in large-scale continuous manufacturing industry and its optimization strategy

    NASA Astrophysics Data System (ADS)

    Yao, Jianchu; Wang, Gaofeng; Wang, Boxing; Zhou, Ji; Yu, Jun

    1995-08-01

    This paper focuses on the large scale petroleum refinery manufacturing industry and has analyzed the characteristics and functional requirements of CIMS in continuous process industries. Then it compares the continuous manufacturing industry with the discrete manufacturing industry on CIMS conceptual model, and presents the functional model frame and key technologies of CIPS. The paper also proposes the optimization model and solution strategy for the CIMS in continuous industry.

  15. Large-scale determination of previously unsolved protein structures using evolutionary information

    PubMed Central

    Ovchinnikov, Sergey; Kinch, Lisa; Park, Hahnbeom; Liao, Yuxing; Pei, Jimin; Kim, David E; Kamisetty, Hetunandan; Grishin, Nick V; Baker, David

    2015-01-01

    The prediction of the structures of proteins without detectable sequence similarity to any protein of known structure remains an outstanding scientific challenge. Here we report significant progress in this area. We first describe de novo blind structure predictions of unprecendented accuracy we made for two proteins in large families in the recent CASP11 blind test of protein structure prediction methods by incorporating residue–residue co-evolution information in the Rosetta structure prediction program. We then describe the use of this method to generate structure models for 58 of the 121 large protein families in prokaryotes for which three-dimensional structures are not available. These models, which are posted online for public access, provide structural information for the over 400,000 proteins belonging to the 58 families and suggest hypotheses about mechanism for the subset for which the function is known, and hypotheses about function for the remainder. DOI: http://dx.doi.org/10.7554/eLife.09248.001 PMID:26335199

  16. Reconstruction of the fine structure of an acoustic scatterer against the distorting influence of its large-scale inhomogeneities

    NASA Astrophysics Data System (ADS)

    Burov, V. A.; Grishina, I. M.; Lapshenkina, O. I.; Morozov, S. A.; Rumyantseva, O. D.; Sukhov, E. G.

    2003-11-01

    In the ultrasonic diagnostics of small-size neoplasms of biological tissues at the earliest stage of their development, an efficient way to eliminate the distorting influence of high-contrast or large inhomogeneities of the biological medium is to apply the iterative technique. A simple approach is proposed, which makes it possible with only two iteration steps to achieve an efficient focusing of the tomograph array. At the first step, the unknown distribution of the large-scale inhomogeneities of sound velocity and absorption over the scatterer is reconstructed, where the large-scale inhomogeneities are those whose size exceeds several wavelengths. At the second step, the fine structure of the scatterer is reconstructed against the large-scale background, which can be performed with a high accuracy owing to the evaluation of the background at the first step. The possibility of simultaneous reconstruction of the large-scale and fine structures by the noniterative Grinevich-Novikov algorithm is considered as an alternative. This algorithm reconstructs in an explicit form two-dimensional refractive-absorbing acoustic scatterers of almost arbitrary shape and strength. Taking into account the effects of multiple scattering, this algorithm provides resolution of the fine structure almost as good as that achieved in reconstructing the same structure against an undistorting homogeneous background. The results of numerical simulations of both algorithms are presented.

  17. New insights about enzyme evolution from large scale studies of sequence and structure relationships.

    PubMed

    Brown, Shoshana D; Babbitt, Patricia C

    2014-10-31

    Understanding how enzymes have evolved offers clues about their structure-function relationships and mechanisms. Here, we describe evolution of functionally diverse enzyme superfamilies, each representing a large set of sequences that evolved from a common ancestor and that retain conserved features of their structures and active sites. Using several examples, we describe the different structural strategies nature has used to evolve new reaction and substrate specificities in each unique superfamily. The results provide insight about enzyme evolution that is not easily obtained from studies of one or only a few enzymes.

  18. Comparison of Prestellar Core Elongations and Large-scale Molecular Cloud Structures in the Lupus I Region

    NASA Astrophysics Data System (ADS)

    Poidevin, Frédérick; Ade, Peter A. R.; Angile, Francesco E.; Benton, Steven J.; Chapin, Edward L.; Devlin, Mark J.; Fissel, Laura M.; Fukui, Yasuo; Gandilo, Natalie N.; Gundersen, Joshua O.; Hargrave, Peter C.; Klein, Jeffrey; Korotkov, Andrei L.; Matthews, Tristan G.; Moncelsi, Lorenzo; Mroczkowski, Tony K.; Netterfield, Calvin B.; Novak, Giles; Nutter, David; Olmi, Luca; Pascale, Enzo; Savini, Giorgio; Scott, Douglas; Shariff, Jamil A.; Diego Soler, Juan; Tachihara, Kengo; Thomas, Nicholas E.; Truch, Matthew D. P.; Tucker, Carole E.; Tucker, Gregory S.; Ward-Thompson, Derek

    2014-08-01

    Turbulence and magnetic fields are expected to be important for regulating molecular cloud formation and evolution. However, their effects on sub-parsec to 100 parsec scales, leading to the formation of starless cores, are not well understood. We investigate the prestellar core structure morphologies obtained from analysis of the Herschel-SPIRE 350 μm maps of the Lupus I cloud. This distribution is first compared on a statistical basis to the large-scale shape of the main filament. We find the distribution of the elongation position angle of the cores to be consistent with a random distribution, which means no specific orientation of the morphology of the cores is observed with respect to the mean orientation of the large-scale filament in Lupus I, nor relative to a large-scale bent filament model. This distribution is also compared to the mean orientation of the large-scale magnetic fields probed at 350 μm with the Balloon-borne Large Aperture Telescope for Polarimetry during its 2010 campaign. Here again we do not find any correlation between the core morphology distribution and the average orientation of the magnetic fields on parsec scales. Our main conclusion is that the local filament dynamics—including secondary filaments that often run orthogonally to the primary filament—and possibly small-scale variations in the local magnetic field direction, could be the dominant factors for explaining the final orientation of each core.

  19. Comparison of prestellar core elongations and large-scale molecular cloud structures in the Lupus I region

    SciTech Connect

    Poidevin, Frédérick; Ade, Peter A. R.; Hargrave, Peter C.; Nutter, David; Angile, Francesco E.; Devlin, Mark J.; Klein, Jeffrey; Benton, Steven J.; Netterfield, Calvin B.; Chapin, Edward L.; Fissel, Laura M.; Gandilo, Natalie N.; Fukui, Yasuo; Gundersen, Joshua O.; Korotkov, Andrei L.; Matthews, Tristan G.; Novak, Giles; Moncelsi, Lorenzo; Mroczkowski, Tony K.; Olmi, Luca; and others

    2014-08-10

    Turbulence and magnetic fields are expected to be important for regulating molecular cloud formation and evolution. However, their effects on sub-parsec to 100 parsec scales, leading to the formation of starless cores, are not well understood. We investigate the prestellar core structure morphologies obtained from analysis of the Herschel-SPIRE 350 μm maps of the Lupus I cloud. This distribution is first compared on a statistical basis to the large-scale shape of the main filament. We find the distribution of the elongation position angle of the cores to be consistent with a random distribution, which means no specific orientation of the morphology of the cores is observed with respect to the mean orientation of the large-scale filament in Lupus I, nor relative to a large-scale bent filament model. This distribution is also compared to the mean orientation of the large-scale magnetic fields probed at 350 μm with the Balloon-borne Large Aperture Telescope for Polarimetry during its 2010 campaign. Here again we do not find any correlation between the core morphology distribution and the average orientation of the magnetic fields on parsec scales. Our main conclusion is that the local filament dynamics—including secondary filaments that often run orthogonally to the primary filament—and possibly small-scale variations in the local magnetic field direction, could be the dominant factors for explaining the final orientation of each core.

  20. Implications of a class of grand-unified theories for large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Shafi, Q.; Stecker, F. W.

    1984-01-01

    A class of grand-unified theories in which cosmologically significant axion and neutrino energy densities arise naturally is considered. To obtain large-scale structure, attention is given to (1) an inflationary scenario, (2) inflation followed by string production, and (3) a noninflationary scenario with density fluctuations caused solely by strings. It is shown that inflation may be compatible with the recent observational indications that Omega less than 1 on the scale of superclusters, particularly if strings are present.

  1. Creating High Quality DEMs of Large Scale Fluvial Environments Using Structure-from-Motion

    NASA Astrophysics Data System (ADS)

    Javernick, L. A.; Brasington, J.; Caruso, B. S.; Hicks, M.; Davies, T. R.

    2012-12-01

    During the past decade, advances in survey and sensor technology have generated new opportunities to investigate the structure and dynamics of fluvial systems. Key geomatic technologies include the Global Positioning System (GPS), digital photogrammetry, LiDAR, and terrestrial laser scanning (TLS). The application of such has resulted in a profound increase in the dimensionality of topographic surveys - from cross-sections to distributed 3d point clouds and digital elevation models (DEMs). Each of these technologies have been used successfully to derive high quality DEMs of fluvial environments; however, they often require specialized and expensive equipment, such as a TLS or large format camera, bespoke platforms such as survey aircraft, and consequently make data acquisition prohibitively expensive or highly labour intensive, thus restricting the extent and frequency of surveys. Recently, advances in computer vision and image analysis have led to development of a novel photogrammetric approach that is fully automated and suitable for use with simple compact (non-metric) cameras. In this paper, we evaluate a new photogrammetric method, Structure-from-Motion (SfM), and demonstrate how this can be used to generate DEMs of comparable quality to airborne LiDAR, using consumer grade cameras at low costs. Using the SfM software PhotoScan (version 0.8.5), high quality DEMs were produced for a 1.6 km reach and a 3.3 km reach of the braided Ahuriri River, New Zealand. Photographs used for DEM creation were acquired from a helicopter flying at 600 m and 800 m above ground level using a consumer grade 10.1mega-pixel, non-metric digital camera, resulting in object space resolution imagery of 0.12 m and 0.16 m respectively. Point clouds for the two study reaches were generated using 147 and 224 photographs respectively, and were extracted automatically in an arbitrary coordinate system; RTK-GPS located ground control points (GCPs) were used to define a 3d non

  2. On the statistics of biased tracers in the Effective Field Theory of Large Scale Structures

    SciTech Connect

    Angulo, Raul; Fasiello, Matteo; Senatore, Leonardo; Vlah, Zvonimir

    2015-09-09

    With the completion of the Planck mission, in order to continue to gather cosmological information it has become crucial to understand the Large Scale Structures (LSS) of the universe to percent accuracy. The Effective Field Theory of LSS (EFTofLSS) is a novel theoretical framework that aims to develop an analytic understanding of LSS at long distances, where inhomogeneities are small. We further develop the description of biased tracers in the EFTofLSS to account for the effect of baryonic physics and primordial non-Gaussianities, finding that new bias coefficients are required. Then, restricting to dark matter with Gaussian initial conditions, we describe the prediction of the EFTofLSS for the one-loop halo-halo and halo-matter two-point functions, and for the tree-level halo-halo-halo, matter-halo-halo and matter-matter-halo three-point functions. Several new bias coefficients are needed in the EFTofLSS, even though their contribution at a given order can be degenerate and the same parameters contribute to multiple observables. We develop a method to reduce the number of biases to an irreducible basis, and find that, at the order at which we work, seven bias parameters are enough to describe this extremely rich set of statistics. We then compare with the output of an N-body simulation where the normalization parameter of the linear power spectrum is set to σ8 = 0.9. For the lowest mass bin, we find percent level agreement up to k ≃ 0.3 h Mpc–1 for the one-loop two-point functions, and up to k ≃ 0.15 h Mpc–1 for the tree-level three-point functions, with the k-reach decreasing with higher mass bins. In conclusion, this is consistent with the theoretical estimates, and suggests that the cosmological information in LSS amenable to analytical control is much more than previously believed.

  3. On the statistics of biased tracers in the Effective Field Theory of Large Scale Structures

    DOE PAGES

    Angulo, Raul; Fasiello, Matteo; Senatore, Leonardo; Vlah, Zvonimir

    2015-09-09

    With the completion of the Planck mission, in order to continue to gather cosmological information it has become crucial to understand the Large Scale Structures (LSS) of the universe to percent accuracy. The Effective Field Theory of LSS (EFTofLSS) is a novel theoretical framework that aims to develop an analytic understanding of LSS at long distances, where inhomogeneities are small. We further develop the description of biased tracers in the EFTofLSS to account for the effect of baryonic physics and primordial non-Gaussianities, finding that new bias coefficients are required. Then, restricting to dark matter with Gaussian initial conditions, we describemore » the prediction of the EFTofLSS for the one-loop halo-halo and halo-matter two-point functions, and for the tree-level halo-halo-halo, matter-halo-halo and matter-matter-halo three-point functions. Several new bias coefficients are needed in the EFTofLSS, even though their contribution at a given order can be degenerate and the same parameters contribute to multiple observables. We develop a method to reduce the number of biases to an irreducible basis, and find that, at the order at which we work, seven bias parameters are enough to describe this extremely rich set of statistics. We then compare with the output of an N-body simulation where the normalization parameter of the linear power spectrum is set to σ8 = 0.9. For the lowest mass bin, we find percent level agreement up to k ≃ 0.3 h Mpc–1 for the one-loop two-point functions, and up to k ≃ 0.15 h Mpc–1 for the tree-level three-point functions, with the k-reach decreasing with higher mass bins. In conclusion, this is consistent with the theoretical estimates, and suggests that the cosmological information in LSS amenable to analytical control is much more than previously believed.« less

  4. The nature of stream-stream interaction in the large-scale structure of the solar wind

    NASA Technical Reports Server (NTRS)

    Lee, T. S.

    1972-01-01

    The stream-stream interaction between a slow solar wind and its leading faster solar wind is considered. A hydrodynamic model comprising double-layered rarefactions and recompressions is proposed toward understanding the observed large-scale structure near the trailing portion of a high-speed stream.

  5. Dark matter, long-range forces, and large-scale structure

    NASA Technical Reports Server (NTRS)

    Gradwohl, Ben-Ami; Frieman, Joshua A.

    1992-01-01

    If the dark matter in galaxies and clusters is nonbaryonic, it can interact with additional long-range fields that are invisible to experimental tests of the equivalence principle. We discuss the astrophysical and cosmological implications of a long-range force coupled only to the dark matter and find rather tight constraints on its strength. If the force is repulsive (attractive), the masses of galaxy groups and clusters (and the mean density of the universe inferred from them) have been systematically underestimated (overestimated). We explore the consequent effects on the two-point correlation function, large-scale velocity flows, and microwave background anisotropies, for models with initial scale-invariant adiabatic perturbations and cold dark matter.

  6. An algebraic sub-structuring method for large-scale eigenvaluecalculation

    SciTech Connect

    Yang, C.; Gao, W.; Bai, Z.; Li, X.; Lee, L.; Husbands, P.; Ng, E.

    2004-05-26

    We examine sub-structuring methods for solving large-scalegeneralized eigenvalue problems from a purely algebraic point of view. Weuse the term "algebraic sub-structuring" to refer to the process ofapplying matrix reordering and partitioning algorithms to divide a largesparse matrix into smaller submatrices from which a subset of spectralcomponents are extracted and combined to provide approximate solutions tothe original problem. We are interested in the question of which spectralcomponentsone should extract from each sub-structure in order to producean approximate solution to the original problem with a desired level ofaccuracy. Error estimate for the approximation to the small esteigen pairis developed. The estimate leads to a simple heuristic for choosingspectral components (modes) from each sub-structure. The effectiveness ofsuch a heuristic is demonstrated with numerical examples. We show thatalgebraic sub-structuring can be effectively used to solve a generalizedeigenvalue problem arising from the simulation of an acceleratorstructure. One interesting characteristic of this application is that thestiffness matrix produced by a hierarchical vector finite elements schemecontains a null space of large dimension. We present an efficient schemeto deflate this null space in the algebraic sub-structuringprocess.

  7. Spatial Structure of Large-Scale Plasma Density Perturbations HF-Induced in the Ionospheric F 2 Region

    NASA Astrophysics Data System (ADS)

    Frolov, V. L.; Komrakov, G. P.; Glukhov, Ya. V.; Andreeva, E. S.; Kunitsyn, V. E.; Kurbatov, G. A.

    2016-07-01

    We consider the experimental results obtained by studying the large-scale structure of the HF-disturbed ionospheric region. The experiments were performed using the SURA heating facility. The disturbed ionospheric region was sounded by signals radiated by GPS navigation satellite beacons as well as by signals of low-orbit satellites (radio tomography). The results of the experiments show that large-scale plasma density perturbations induced at altitudes higher than the F2 layer maximum can contribute significantly to the measured variations of the total electron density and can, with a certain arrangement of the reception points, be measured by the GPS sounding method.

  8. Galaxy clustering on large scales.

    PubMed

    Efstathiou, G

    1993-06-01

    I describe some recent observations of large-scale structure in the galaxy distribution. The best constraints come from two-dimensional galaxy surveys and studies of angular correlation functions. Results from galaxy redshift surveys are much less precise but are consistent with the angular correlations, provided the distortions in mapping between real-space and redshift-space are relatively weak. The galaxy two-point correlation function, rich-cluster two-point correlation function, and galaxy-cluster cross-correlation function are all well described on large scales ( greater, similar 20h-1 Mpc, where the Hubble constant, H0 = 100h km.s-1.Mpc; 1 pc = 3.09 x 10(16) m) by the power spectrum of an initially scale-invariant, adiabatic, cold-dark-matter Universe with Gamma = Omegah approximately 0.2. I discuss how this fits in with the Cosmic Background Explorer (COBE) satellite detection of large-scale anisotropies in the microwave background radiation and other measures of large-scale structure in the Universe.

  9. Constraints on dark-matter properties from large-scale structure

    NASA Astrophysics Data System (ADS)

    Kunz, Martin; Nesseris, Savvas; Sawicki, Ignacy

    2016-07-01

    We use large-scale cosmological observations to place constraints on the dark-matter pressure, sound speed and viscosity and infer a limit on the mass of warm-dark-matter particles. Measurements of the cosmic microwave background anisotropies constrain the equation of state and sound speed of the dark matter (DM) at last scattering at the per mille level. Since the redshifting of collisionless particles universally implies that these quantities scale like a-2 absent shell crossing, we infer that today w(DM )<1 0-10.0 , cs,(DM ) 2<1 0-10.7 and cvis,(DM) 2<1 0-10.3 at the 99% confidence level. This very general bound can be translated to model-dependent constraints on dark-matter models: For warm dark matter these constraints imply m >70 eV , assuming it decoupled while relativistic around the same time as the neutrinos; for a cold relic, we show that m >100 eV . We separately constrain the properties of the DM fluid on linear scales at late times and find upper bounds cs,(DM ) 2<1 0-5.9 and cvis,(DM) 2<1 0-5.7 , with no detection of nondust properties for the DM.

  10. Ionizing Radiation Fluctuations and Large-Scale Structure in the Lyα Forest

    NASA Astrophysics Data System (ADS)

    Croft, Rupert A. C.

    2004-08-01

    We investigate the large-scale inhomogeneities of the hydrogen-ionizing radiation field in the universe at redshift z=3. Using a ray-tracing algorithm, we simulate a model in which quasars are the dominant sources of radiation. We make use of large-scale N-body simulations of a Λ cold dark matter universe and include such effects as finite quasar lifetimes and output on the light cone, which affects the shape of quasar light echoes. We create Lyα forest spectra that would be generated in the presence of such a fluctuating radiation field, finding that the power spectrum of the Lyα forest can be suppressed by as much as 15% for modes with k=0.05-1hMpc-1. This relatively small effect may have consequences for high-precision measurements of the Lyα power spectrum on larger scales than have yet been published. We also investigate a second probe of the ionizing radiation fluctuations, the cross-correlation of quasar positions and the Lyα forest. For both quasar lifetimes that we simulate (107 and 108 yr), we expect to see a strong decrease in the Lyα absorption close to other quasars (the ``foreground'' proximity effect). We then use data from the Sloan Digital Sky Survey First Data Release to make an observational determination of this statistic. We find no sign of our predicted lack of absorption, but instead increased absorption close to quasars. If the bursts of radiation from quasars last on average less than 106 yr, then we would not expect to be able to see the foreground effect. However, the strength of the absorption itself seems to be indicative of rare objects and hence much longer total times of emission per quasar. Variability of quasars in bursts with timescales of between 104 and 106 yr could reconcile these two facts.

  11. Comparing large-scale computational approaches to epidemic modeling: agent based versus structured metapopulation models

    NASA Astrophysics Data System (ADS)

    Gonçalves, Bruno; Ajelli, Marco; Balcan, Duygu; Colizza, Vittoria; Hu, Hao; Ramasco, José; Merler, Stefano; Vespignani, Alessandro

    2010-03-01

    We provide for the first time a side by side comparison of the results obtained with a stochastic agent based model and a structured metapopulation stochastic model for the evolution of a baseline pandemic event in Italy. The Agent Based model is based on the explicit representation of the Italian population through highly detailed data on the socio-demographic structure. The metapopulation simulations use the GLobal Epidemic and Mobility (GLEaM) model, based on high resolution census data worldwide, and integrating airline travel flow data with short range human mobility patterns at the global scale. Both models provide epidemic patterns that are in very good agreement at the granularity levels accessible by both approaches, with differences in peak timing of the order of few days. The age breakdown analysis shows that similar attack rates are obtained for the younger age classes.

  12. Structural and biophysical attributes of spatially complex ecosystems: Large-scale measurement and implications for biogeochemistry

    NASA Astrophysics Data System (ADS)

    Asner, Gregory Paul

    The central goal of this work was to develop new top-down and bottom-up strategies to scale plant biophysical attributes from leaf to regional levels so that remote sensing can best bridge the gap between ecosystem structure and function. I explore how plant canopies interact with photosynthetically active radiation (PAR), which affects photosynthetic capacity, and thus maximum carbon assimilation and net primary production. Along a 900 km Texas savanna transect, I found that tissue-level PAR absorption among species, genera, functional groups, growthforms, and between climatologically diverse regions was statistically similar. Canopy-level analyses indicated that leaf optical variability explained only a small proportion of the variance in canopy PAR absorption, while non-photosynthetic vegetation (e.g. woody stems and litter) and leaf area contributed significantly to canopy variance. However, analyses also revealed that the extent and leaf area of canopies were the dominant controls on landscape PAR absorption, while variation in tissue properties played a very secondary role. Based on the quantified scale-dependence of PAR absorption across landscapes, I developed a suite of methods to access plant canopy structural and biophysical attributes from remote sensing data. Canopy radiative transfer (RT) models, which mechanistically simulate the spectral and angular variation in vegetation reflectance, can be inverted to estimate plant characteristics from multi-view angle, remotely sensed data. I found relationships between tissue spectral properties using a diverse array of woody plant and grass species, which allow greater efficiency in canopy radiation modeling. I then focus on the spatial heterogeneity of land cover, land use, vegetation structure, and carbon uptake in a Texas savanna rangeland region. I devised a multi-satellite/inverse modeling approach to quantify variation in woody plant and herbaceous canopy attributes. I found that by estimating a suite

  13. Uncovering large-scale coherent structures in natural and forced turbulent wakes by combining PIV, POD, and FTLE

    NASA Astrophysics Data System (ADS)

    Kourentis, L.; Konstantinidis, E.

    2012-03-01

    Planar velocity data of the unsteady separated flow in the turbulent wake of a circular cylinder obtained by particle image velocimetry (PIV) are analyzed in order to visualize the large-scale coherent structures associated with alternating vortex shedding at a Reynolds number of 2,150. Two different cases are examined: unforced vortex shedding in the natural wake and vortex lock-on incited by forced perturbations superimposed in the inflow velocity. Proper orthogonal decomposition (POD) is employed to reconstruct the low-order wake dynamics from randomly sampled snapshots of the velocity field. The reconstructed flow is subsequently used to determine the evolution of the finite-time Lyapunov exponent (FTLE) fields which identify the Lagrangian coherent structures. The results demonstrate that the combination of methods employed offers a powerful visualization tool to uncover large-scale coherent structures and to exemplify vortex dynamics in natural and forced bluff-body wakes.

  14. Introduction of a test measurement for a monitoring technology inside a large-scale civil engineering structure using muon radiography

    NASA Astrophysics Data System (ADS)

    Sannomiya, A.; Tanaka, H.

    2012-04-01

    Akira Sannomiya1*, Koichiro Tada1*, Hiroyuki K.M. Tanaka2* Chigasaki Research Institute, Technology Development Center, Electric Power Development Co., Ltd.1, Earthquake Research Institute, University of Tokyo, Japan2 Introduction The technology that enables us to observe the internal structure of a volcano and the city foundation is being developed by utilizing the muon's significant penetration power. From the possibility to use this technology for the surveillance inside a large-scale civil engineering structure, we are planning an experimental measurement. General Instruction A final target is safety judgment of the condition of a large-scale civil engineering structure. It is important for safety judgment to grasp the internal density contract, such as the crack and slack levels of a base rock or the structure, and degradation and groundwater levels. However, feasibility of application of muon radiography to monitoring inside the large-scale civil engineering structure has not confirmed yet. Therefore, as a test experiment, we attempt to measure the fluctuation of the groundwater level in order to evaluate and examine the method. Measurement will be carried out from the inside of a scupper tunnel in the base rock. The result will be compared with the independent groundwater level measurement in order to perform quantitative evaluation of muon radiography. In addition, this test measurement will start the near future. About a detailed plan, it is under examination now.

  15. Natural snowfall reveals large-scale flow structures in the wake of a 2.5-MW wind turbine.

    PubMed

    Hong, Jiarong; Toloui, Mostafa; Chamorro, Leonardo P; Guala, Michele; Howard, Kevin; Riley, Sean; Tucker, James; Sotiropoulos, Fotis

    2014-06-24

    To improve power production and structural reliability of wind turbines, there is a pressing need to understand how turbines interact with the atmospheric boundary layer. However, experimental techniques capable of quantifying or even qualitatively visualizing the large-scale turbulent flow structures around full-scale turbines do not exist today. Here we use snowflakes from a winter snowstorm as flow tracers to obtain velocity fields downwind of a 2.5-MW wind turbine in a sampling area of ~36 × 36 m(2). The spatial and temporal resolutions of the measurements are sufficiently high to quantify the evolution of blade-generated coherent motions, such as the tip and trailing sheet vortices, identify their instability mechanisms and correlate them with turbine operation, control and performance. Our experiment provides an unprecedented in situ characterization of flow structures around utility-scale turbines, and yields significant insights into the Reynolds number similarity issues presented in wind energy applications.

  16. Large-scale natural disturbance alters genetic population structure of the sailfin molly, Poecilia latipinna.

    PubMed

    Apodaca, Joseph J; Trexler, Joel C; Jue, Nathaniel K; Schrader, Matthew; Travis, Joseph

    2013-02-01

    Many inferences about contemporary rates of gene flow are based on the assumption that the observed genetic structure among populations is stable. Recent studies have uncovered several cases in which this assumption is tenuous. Most of those studies have focused on the effects that regular environmental fluctuations can have on genetic structure and gene flow patterns. Occasional catastrophic disturbances could also alter either the distribution of habitat or the spatial distribution of organisms in a way that affects population structure. However, evidence of such effects is sparse in the literature because it is difficult to obtain. Hurricanes, in particular, have the potential to exert dramatic effects on population structure of organisms found on islands or coral reefs or in near shore and coastal habitats. Here we draw on a historic genetic data set and new data to suggest that the genetic structure of sailfin molly (Poecilia latipinna) populations in north Florida was altered dramatically by an unusually large and uncommon type of storm surge associated with Hurricane Dennis in 2005. We compare the spatial pattern of genetic variation in these populations after Hurricane Dennis to the patterns described in an earlier study in this same area. We use comparable genetic data from another region of Florida, collected in the same two periods, to estimate the amount of change expected from typical temporal variation in population structure. The comparative natural history of sailfin mollies in these two regions indicates that the change in population structure produced by the storm surge is not the result of many local extinctions with recolonization from a few refugia but emerged from a pattern of mixing and redistribution.

  17. Galaxy evolution and large-scale structure in the far-infrared. I - IRAS pointed observations

    NASA Technical Reports Server (NTRS)

    Lonsdale, Carol J.; Hacking, Perry B.

    1989-01-01

    Redshifts for 66 galaxies were obtained from a sample of 93 60-micron sources detected serendipitously in 22 IRAS deep pointed observations, covering a total area of 18.4 sq deg. The flux density limit of this survey is 150 mJy, 4 times fainter than the IRAS Point Source Catalog (PSC). The luminosity function is similar in shape with those previously published for samples selected from the PSC, with a median redshift of 0.048 for the fainter sample, but shifted to higher space densities. There is evidence that some of the excess number counts in the deeper sample can be explained in terms of a large-scale density enhancement beyond the Pavo-Indus supercluster. In addition, the faintest counts in the new sample confirm the result of Hacking et al. (1989) that faint IRAS 60-micron source counts lie significantly in excess of an extrapolation of the PSC counts assuming no luminosity or density evolution.

  18. Large-scale topography of Io - Implications for internal structure and heat transfer

    NASA Technical Reports Server (NTRS)

    Gaskell, Robert W.; Synnott, Stephen P.; Mcewen, Alfred S.; Schaber, Gerald G.

    1988-01-01

    Recent stereographic methods have been applied to Voyager 1 images in order to determine the shape and large-scale topography of Io. The best triaxial figure of semiaxes of 1830.0, 1818.7, and 1815.3 kilometers is consistent with a differentiated satellite in hydrostatic equilibrium. It is suggested that many of the broad topographic swells and basins noted may be due to isostatic responses to thermal changes in the lithosphere-asthenosphere system. Results support the picture of increasing heat flow converting the basal lithosphere into a lower-density asthenosphere, resulting in isostatic uplift. It is shown that lithospheric thicknesses ranging from 5-100 km may results in elevation variations of up to 1 km.

  19. Galaxy evolution and large-scale structure in the far-infrared. I - IRAS pointed observations

    NASA Astrophysics Data System (ADS)

    Lonsdale, Carol J.; Hacking, Perry B.

    1989-04-01

    Redshifts for 66 galaxies were obtained from a sample of 93 60-micron sources detected serendipitously in 22 IRAS deep pointed observations, covering a total area of 18.4 sq deg. The flux density limit of this survey is 150 mJy, 4 times fainter than the IRAS Point Source Catalog (PSC). The luminosity function is similar in shape with those previously published for samples selected from the PSC, with a median redshift of 0.048 for the fainter sample, but shifted to higher space densities. There is evidence that some of the excess number counts in the deeper sample can be explained in terms of a large-scale density enhancement beyond the Pavo-Indus supercluster. In addition, the faintest counts in the new sample confirm the result of Hacking et al. (1989) that faint IRAS 60-micron source counts lie significantly in excess of an extrapolation of the PSC counts assuming no luminosity or density evolution.

  20. Large scale prop-fan structural design study. Volume 1: Initial concepts

    NASA Technical Reports Server (NTRS)

    Billman, L. C.; Gruska, C. J.; Ladden, R. M.; Leishman, D. K.; Turnberg, J. E.

    1988-01-01

    In recent years, considerable attention has been directed toward improving aircraft fuel consumption. Studies have shown that the inherent efficiency advantage that turboprop propulsion systems have demonstrated at lower cruise speeds may now be extended to the higher speeds of today's turbofan and turbojet-powered aircraft. To achieve this goal, new propeller designs will require features such as thin, high speed airfoils and aerodynamic sweep, features currently found only in wing designs for high speed aircraft. This is Volume 1 of a 2 volume study to establish structural concepts for such advanced propeller blades, to define their structural properties, to identify any new design, analysis, or fabrication techniques which were required, and to determine the structural tradeoffs involved with several blade shapes selected primarily on the basis of aero/acoustic design considerations. The feasibility of fabricating and testing dynamically scaled models of these blades for aeroelastic testing was also established. The preliminary design of a blade suitable for flight use in a testbed advanced turboprop was conducted and is described in Volume 2.

  1. Large scale prop-fan structural design study. Volume 2: Preliminary design of SR-7

    NASA Technical Reports Server (NTRS)

    Billman, L. C.; Gruska, C. J.; Ladden, R. M.; Leishman, D. K.; Turnberg, J. E.

    1988-01-01

    In recent years, considerable attention has been directed toward improving aircraft fuel consumption. Studies have shown that the inherent efficiency advantage that turboprop propulsion systems have demonstrated at lower cruise speeds may now be extended to the higher speeds of today's turbofan and turbojet-powered aircraft. To achieve this goal, new propeller designs will require features such as thin, high speed airfoils and aerodynamic sweep, features currently found only in wing designs for high speed aircraft. This is Volume 2 of a 2 volume study to establish structural concepts for such advanced propeller blades, to define their structural properties, to identify any new design, analysis, or fabrication techniques which were required, and to determine the structural tradeoffs involved with several blade shapes selected primarily on the basis of aero/acoustic design considerations. The feasibility of fabricating and testing dynamically scaled models of these blades for aeroelastic testing was also established. The preliminary design of a blade suitable for flight use in a testbed advanced turboprop was conducted and is described.

  2. Effects and detectability of quasi-single field inflation in the large-scale structure and cosmic microwave background

    SciTech Connect

    Sefusatti, Emiliano; Fergusson, James R.; Chen, Xingang; Shellard, E.P.S. E-mail: jf334@damtp.cam.ac.uk E-mail: E.P.S.Shellard@damtp.cam.ac.uk

    2012-08-01

    Quasi-single field inflation predicts a peculiar momentum dependence in the squeezed limit of the primordial bispectrum which smoothly interpolates between the local and equilateral models. This dependence is directly related to the mass of the isocurvatons in the theory which is determined by the supersymmetry. Therefore, in the event of detection of a non-zero primordial bispectrum, additional constraints on the parameter controlling the momentum-dependence in the squeezed limit becomes an important question. We explore the effects of these non-Gaussian initial conditions on large-scale structure and the cosmic microwave background, with particular attention to the galaxy power spectrum at large scales and scale-dependence corrections to galaxy bias. We determine the simultaneous constraints on the two parameters describing the QSF bispectrum that we can expect from upcoming large-scale structure and cosmic microwave background observations. We find that for relatively large values of the non-Gaussian amplitude parameters, but still well within current uncertainties, galaxy power spectrum measurements will be able to distinguish the QSF scenario from the predictions of the local model. A CMB likelihood analysis, as well as Fisher matrix analysis, shows that there is also a range of parameter values for which Planck data may be able distinguish between QSF models and the related local and equilateral shapes. Given the different observational weightings of the CMB and LSS results, degeneracies can be significantly reduced in a joint analysis.

  3. The solar wind structure that caused a large-scale disturbance of the plasma tail of comet Austin

    NASA Technical Reports Server (NTRS)

    Kozuka, Yukio; Konno, Ichishiro; Saito, Takao; Numazawa, Shigemi

    1992-01-01

    The plasma tail of Comet Austin (1989c1) showed remarkable disturbances because of the solar maximum periods and its orbit. Figure 1 shows photographs of Comet Austin taken in Shibata, Japan, on 29 Apr. 1990 UT, during about 20 minutes with the exposure times of 90 to 120 s. There are two main features in the disturbance; one is many bowed structures, which seem to move tailwards; and the other is a large-scale wavy structure. The bowed structures can be interpreted as arcade structures brushing the surface of both sides of the cometary plasma surrounding the nucleus. We identified thirteen structures of the arcades from each of the five photographs and calculated the relation between the distance of each structure from the cometary nucleus, chi, and the velocity, upsilon. The result is shown. This indicates that the velocity of the structures increases with distance. This is consistent with the result obtained from the observation at the Kiso Observatory.

  4. The solar wind structure that caused a large-scale disturbance of the plasma tail of comet Austin

    NASA Astrophysics Data System (ADS)

    Kozuka, Yukio; Konno, Ichishiro; Saito, Takao; Numazawa, Shigemi

    1992-12-01

    The plasma tail of Comet Austin (1989c1) showed remarkable disturbances because of the solar maximum periods and its orbit. Figure 1 shows photographs of Comet Austin taken in Shibata, Japan, on 29 Apr. 1990 UT, during about 20 minutes with the exposure times of 90 to 120 s. There are two main features in the disturbance; one is many bowed structures, which seem to move tailwards; and the other is a large-scale wavy structure. The bowed structures can be interpreted as arcade structures brushing the surface of both sides of the cometary plasma surrounding the nucleus. We identified thirteen structures of the arcades from each of the five photographs and calculated the relation between the distance of each structure from the cometary nucleus, chi, and the velocity, upsilon. The result is shown. This indicates that the velocity of the structures increases with distance. This is consistent with the result obtained from the observation at the Kiso Observatory.

  5. Weak Lensing by Large-Scale Structure and the Polarization Properties of Distant Radio Sources

    NASA Astrophysics Data System (ADS)

    Surpi, Gabriela C.; Harari, Diego D.

    1999-04-01

    We estimate the effects of weak lensing by large-scale density inhomogeneities and long-wavelength gravitational waves on the polarization properties of electromagnetic radiation as it propagates from cosmologically distant sources. Scalar (density) fluctuations do not rotate either the plane of polarization of the electromagnetic radiation or the source image. They do, however, produce an appreciable shear that distorts the image shape, leading to an apparent rotation of the image orientation relative to its plane of polarization. In sources with large ellipticity, the apparent rotation is rather small, of the order (in radians) of the dimensionless shear. The effect is larger at smaller source eccentricities. A shear of 1% can induce apparent rotations of around 5° in radio sources with the smallest eccentricity among those with a significant degree of integrated linear polarization. We discuss the possibility that weak lensing by shear with an rms value around or below 5% may be the cause for the dispersion in the direction of integrated linear polarization of cosmologically distant radio sources away from the perpendicular to their major axis, as expected from models of their magnetic fields. An rms shear larger than 5% would be incompatible with the observed correlation between polarization properties and source orientation in distant radio galaxies and quasars. Gravity waves do rotate both the plane of polarization and the source image. Their weak-lensing effects, however, are negligible.

  6. Decoding the Large-Scale Structure of Brain Function by Classifying Mental States Across Individuals

    PubMed Central

    Poldrack, Russell A.; Halchenko, Yaroslav; Hanson, Stephen José

    2010-01-01

    Brain-imaging research has largely focused on localizing patterns of activity related to specific mental processes, but recent work has shown that mental states can be identified from neuroimaging data using statistical classifiers. We investigated whether this approach could be extended to predict the mental state of an individual using a statistical classifier trained on other individuals, and whether the information gained in doing so could provide new insights into how mental processes are organized in the brain. Using a variety of classifier techniques, we achieved cross-validated classification accuracy of 80% across individuals (chance = 13%). Using a neural network classifier, we recovered a low-dimensional representation common to all the cognitive-perceptual tasks in our data set, and we used an ontology of cognitive processes to determine the cognitive concepts most related to each dimension. These results revealed a small organized set of large-scale networks that map cognitive processes across a highly diverse set of mental tasks, suggesting a novel way to characterize the neural basis of cognition. PMID:19883493

  7. An evolutionary theory of large-scale human warfare: Group-structured cultural selection.

    PubMed

    Zefferman, Matthew R; Mathew, Sarah

    2015-01-01

    When humans wage war, it is not unusual for battlefields to be strewn with dead warriors. These warriors typically were men in their reproductive prime who, had they not died in battle, might have gone on to father more children. Typically, they are also genetically unrelated to one another. We know of no other animal species in which reproductively capable, genetically unrelated individuals risk their lives in this manner. Because the immense private costs borne by individual warriors create benefits that are shared widely by others in their group, warfare is a stark evolutionary puzzle that is difficult to explain. Although several scholars have posited models of the evolution of human warfare, these models do not adequately explain how humans solve the problem of collective action in warfare at the evolutionarily novel scale of hundreds of genetically unrelated individuals. We propose that group-structured cultural selection explains this phenomenon.

  8. An evolutionary theory of large-scale human warfare: Group-structured cultural selection.

    PubMed

    Zefferman, Matthew R; Mathew, Sarah

    2015-01-01

    When humans wage war, it is not unusual for battlefields to be strewn with dead warriors. These warriors typically were men in their reproductive prime who, had they not died in battle, might have gone on to father more children. Typically, they are also genetically unrelated to one another. We know of no other animal species in which reproductively capable, genetically unrelated individuals risk their lives in this manner. Because the immense private costs borne by individual warriors create benefits that are shared widely by others in their group, warfare is a stark evolutionary puzzle that is difficult to explain. Although several scholars have posited models of the evolution of human warfare, these models do not adequately explain how humans solve the problem of collective action in warfare at the evolutionarily novel scale of hundreds of genetically unrelated individuals. We propose that group-structured cultural selection explains this phenomenon. PMID:25914359

  9. The topology of large-scale structure. V - Two-dimensional topology of sky maps

    NASA Technical Reports Server (NTRS)

    Gott, J. R., III; Mao, Shude; Park, Changbom; Lahav, Ofer

    1992-01-01

    A 2D algorithm is applied to observed sky maps and numerical simulations. It is found that when topology is studied on smoothing scales larger than the correlation length, the topology is approximately in agreement with the random phase formula for the 2D genus-threshold density relation, G2(nu) varies as nu(e) exp-nu-squared/2. Some samples show small 'meatball shifts' similar to those seen in corresponding 3D observational samples and similar to those produced by biasing in cold dark matter simulations. The observational results are thus consistent with the standard model in which the structure in the universe today has grown from small fluctuations caused by random quantum noise in the early universe.

  10. Hierarchical, decentralized control system for large-scale smart-structures

    NASA Astrophysics Data System (ADS)

    Algermissen, Stephan; Fröhlich, Tim; Monner, Hans Peter

    2014-08-01

    Active control of sound and vibration has gained much attention in all kinds of industries in the past decade. Future prospects for maximizing airline passenger comfort are especially promising. The objectives of recent research projects in this area are the reduction of noise transmission through thin walled structures such as fuselages, linings or interior elements. Besides different external noise sources, such as the turbulent boundary layer, rotor or jet noise, the actuator and sensor placement as well as different control concepts are addressed. Mostly, the work is focused on a single panel or section of the fuselage, neglecting the fact that for effective noise reduction the entire fuselage has to be taken into account. Nevertheless, extending the scope of an active system from a single panel to the entire fuselage increases the effort for control hardware dramatically. This paper presents a control concept for large structures using distributed control nodes. Each node has the capability to execute a vibration or noise controller for a specific part or section of the fuselage. For maintenance, controller tuning or performance measurement, all nodes are connected to a host computer via Universal Serial Bus (USB). This topology allows a partitioning and distributing of tasks. The nodes execute the low-level control functions. High-level tasks like maintenance, system identification and control synthesis are operated by the host using streamed data from the nodes. By choosing low-price nodes, a very cost effective way of implementing an active system for large structures is realized. Besides the system identification and controller synthesis on the host computer, a detailed view on the hardware and software concept for the nodes is given. Finally, the results of an experimental test of a system running a robust vibration controller at an active panel demonstrator are shown.

  11. Using stochastically-generated subcolumns to represent cloud structure in a large-scale model

    SciTech Connect

    Pincus, R; Hemler, R; Klein, S A

    2005-12-08

    A new method for representing subgrid-scale cloud structure, in which each model column is decomposed into a set of subcolumns, has been introduced into the Geophysical Fluid Dynamics Laboratory's global climate model AM2. Each subcolumn in the decomposition is homogeneous but the ensemble reproduces the initial profiles of cloud properties including cloud fraction, internal variability (if any) in cloud condensate, and arbitrary overlap assumptions that describe vertical correlations. These subcolumns are used in radiation and diagnostic calculations, and have allowed the introduction of more realistic overlap assumptions. This paper describes the impact of these new methods for representing cloud structure in instantaneous calculations and long-term integrations. Shortwave radiation computed using subcolumns and the random overlap assumption differs in the global annual average by more than 4 W/m{sup 2} from the operational radiation scheme in instantaneous calculations; much of this difference is counteracted by a change in the overlap assumption to one in which overlap varies continuously with the separation distance between layers. Internal variability in cloud condensate, diagnosed from the mean condensate amount and cloud fraction, has about the same effect on radiative fluxes as does the ad hoc tuning accounting for this effect in the operational radiation scheme. Long simulations with the new model configuration show little difference from the operational model configuration, while statistical tests indicate that the model does not respond systematically to the sampling noise introduced by the approximate radiative transfer techniques introduced to work with the subcolumns.

  12. Burgers' equation, Devil's staircases and the mass distribution for large-scale structures

    NASA Astrophysics Data System (ADS)

    Vergassola, M.; Dubrulle, B.; Frisch, U.; Noullez, A.

    1994-09-01

    In the simple one-dimensional case, with ordinary Brownian motion as initial condition, numerically supported conjectures by She et al. have led to a proof by Sinai of the following result: there is a Devil's staricase of dimension 1/2 in the Lagranian map for the solution of the Burgers equation in the limit of vanishing viscosity. The main goal of this paper is to give a comprehensive introduction to these recent theoretical develpments and the extend them to initial power-law spectra with a wide range of exponents and to more than one dimension. The necessary geometric and probablistic tools, due mostly to Sinai, are here presented in a detailed but rather elementary way, intended for a readership of general physicists. The extensions of Sinai's theory presented here offer included heuristic elements. Most of the predictions are however tested by accurate numerical experiments in one and two dimensions, using a new 'Fast Legendre Transform' algorithm which exploits a monotonicity property and has very low storage requirements. Predictions of the present theory for the mass function are compared to those of Press and Schechter (1974). Their expression for the mass function is found to agree with the adhesion model at large masses in any dimension. At small masses, there are discrpancies in dimension. At small masses, there are discrpancies in dimensions higher than one. In one dimension the scaling behavior at small masses is correctly given by the Press-Schechter theory. Sinai's theory, recast in the language of gravitational collapse, tells us that the scaling originates not from the condition of collapse of a given region of small size, but from a condition of non-collapse of an extended halo around the region.

  13. Large-scale inhomogeneities in solutions of low molar mass compounds and mixtures of liquids: supramolecular structures or nanobubbles?

    PubMed

    Sedlák, Marián; Rak, Dmytro

    2013-02-28

    In textbooks, undersaturated solutions of low molar mass compounds and mixtures of freely miscible liquids are considered as homogeneous at larger length scales exceeding appreciably dimensions of individual molecules. However, growing experimental evidence reveals that it is not the case. Large-scale structures with sizes on the order of 100 nm are present in solutions and mixtures used in everyday life and research practice, especially in aqueous systems. These mesoscale inhomogeneities are long-lived, and (relatively slow) kinetics of their formation can be monitored upon mixing the components. Nevertheless, the nature of these structures and mechanisms behind their formation are not clear yet. Since it was previously suggested that these can be nanobubbles stabilized by adsorbed solute at the gas/solvent interface, we devote the current study to addressing this question. Static and dynamic light scattering was used to investigate solutions and mixtures prepared at ordinary conditions (equilibrated with air at 1 atm), prepared with degassed solvent, and solutions and mixtures degassed after formation of large structures. The behavior of large structures in strong gravitational centrifugal fields was also investigated. Systems from various categories were chosen for this study: aqueous solutions of an inorganic ionic compound (MgSO4), organic ionic compound (citric acid), uncharged organic compound (urea), and a mixture of water with organic solvent freely miscible with water (tert-butyl alcohol). Obtained results show that these structures are not nanobubbles in all cases. Visualization of large-scale structures via nanoparticle tracking analysis is presented. NTA results confirm conclusions from our previous light scattering work.

  14. Testing LTB void models without the cosmic microwave background or large scale structure: new constraints from galaxy ages

    SciTech Connect

    Putter, Roland de; Verde, Licia; Jimenez, Raul E-mail: liciaverde@icc.ub.edu

    2013-02-01

    We present new observational constraints on inhomogeneous models based on observables independent of the CMB and large-scale structure. Using Bayesian evidence we find very strong evidence for the homogeneous LCDM model, thus disfavouring inhomogeneous models. Our new constraints are based on quantities independent of the growth of perturbations and rely on cosmic clocks based on atomic physics and on the local density of matter.

  15. Mapping 3D Large-Scale Structure at z ˜2 with Lyman-α Forest Tomographic Mapping

    NASA Astrophysics Data System (ADS)

    Lee, Khee-Gan; Hennawi, J. F.; White, M.; Croft, R. A.; Prochaska, J. X.; Schlegel, D. J.; Suzuki, N.; Kneib, J.; Bailey, S. J.; Spergel, D. N.; Rix, H.; Strauss, M. A.

    2014-01-01

    The Lyman-α (Lyα) forest absorption at z>2 traces the underlying dark-matter distribution, and with a sufficient density of background sightlines can be used to create 3D tomographic maps of large-scale structure. Since the useful Lyα forest in each sightline spans ˜400-500 h-1Mpc, Lyα forest tomography can efficiently map out large-scale structure at z˜2. The Cosmic Lyman-Alpha Program for the Tomographic Reconstruction of Absorption Probes (CLAPTRAP) will be the first survey to attempt this technique. We aim to obtain spectra for a background grid of faint quasars and bright LBGs at 2Large Telescopes. We aim to observe ˜1500-2000 background sources over 1 sq deg of the COSMOS field with Lyα forest coverage over 2.0large-scale structure at z>1. In conjunction with the rich multi-wavelength data from the COSMOS survey, these maps will facilitate the study of galaxies in the context of the large-scale environment, reveal the topology of large-scale structure at high-redshifts, and allow the direct detection of galaxy protoclusters at the intersections of the cosmic web. The

  16. Large scale tracking algorithms.

    SciTech Connect

    Hansen, Ross L.; Love, Joshua Alan; Melgaard, David Kennett; Karelitz, David B.; Pitts, Todd Alan; Zollweg, Joshua David; Anderson, Dylan Z.; Nandy, Prabal; Whitlow, Gary L.; Bender, Daniel A.; Byrne, Raymond Harry

    2015-01-01

    Low signal-to-noise data processing algorithms for improved detection, tracking, discrimination and situational threat assessment are a key research challenge. As sensor technologies progress, the number of pixels will increase signi cantly. This will result in increased resolution, which could improve object discrimination, but unfortunately, will also result in a significant increase in the number of potential targets to track. Many tracking techniques, like multi-hypothesis trackers, suffer from a combinatorial explosion as the number of potential targets increase. As the resolution increases, the phenomenology applied towards detection algorithms also changes. For low resolution sensors, "blob" tracking is the norm. For higher resolution data, additional information may be employed in the detection and classfication steps. The most challenging scenarios are those where the targets cannot be fully resolved, yet must be tracked and distinguished for neighboring closely spaced objects. Tracking vehicles in an urban environment is an example of such a challenging scenario. This report evaluates several potential tracking algorithms for large-scale tracking in an urban environment.

  17. Galaxy evolution and large-scale structure in the far-infrared. I. IRAS pointed observations

    SciTech Connect

    Lonsdale, C.J.; Hacking, P.B.

    1989-04-01

    Redshifts for 66 galaxies were obtained from a sample of 93 60-micron sources detected serendipitously in 22 IRAS deep pointed observations, covering a total area of 18.4 sq deg. The flux density limit of this survey is 150 mJy, 4 times fainter than the IRAS Point Source Catalog (PSC). The luminosity function is similar in shape with those previously published for samples selected from the PSC, with a median redshift of 0.048 for the fainter sample, but shifted to higher space densities. There is evidence that some of the excess number counts in the deeper sample can be explained in terms of a large-scale density enhancement beyond the Pavo-Indus supercluster. In addition, the faintest counts in the new sample confirm the result of Hacking et al. (1989) that faint IRAS 60-micron source counts lie significantly in excess of an extrapolation of the PSC counts assuming no luminosity or density evolution. 81 refs.

  18. Analyzing Large-Scale Structural Change in Proteins: Comparison of Principal Component Projection and Sammon Mapping

    SciTech Connect

    Mesentean, Sidonia; Fischer, S.; Smith, Jeremy C

    2006-04-01

    Effective analysis of large-scale conformational transitions in macromolecules requires transforming them into a lower dimensional representation that captures the dominant motions. Herein, we apply and compare two different dimensionality reduction techniques, namely, principal component analysis (PCA), a linear method, and Sammon mapping, which is nonlinear. The two methods are used to analyze four different protein transition pathways of varying complexity, obtained by using either the conjugate peak refinement method or constrained molecular dynamics. For the return-stroke in myosin, both Sammon mapping and PCA show that the conformational change is dominated by a simple rotation of a rigid body. Also, in the case of the T{yields}R transition in hemoglobin, both methods are able to identify the two main quaternary transition events. In contrast, in the cases of the unfolding transition of staphylococcal nuclease or the signaling switch of Ras p21, which are both more complex conformational transitions, only Sammon mapping is able to identify the distinct phases of motion.

  19. Fast large scale structure perturbation theory using one-dimensional fast Fourier transforms

    NASA Astrophysics Data System (ADS)

    Schmittfull, Marcel; Vlah, Zvonimir; McDonald, Patrick

    2016-05-01

    The usual fluid equations describing the large-scale evolution of mass density in the universe can be written as local in the density, velocity divergence, and velocity potential fields. As a result, the perturbative expansion in small density fluctuations, usually written in terms of convolutions in Fourier space, can be written as a series of products of these fields evaluated at the same location in configuration space. Based on this, we establish a new method to numerically evaluate the 1-loop power spectrum (i.e., Fourier transform of the 2-point correlation function) with one-dimensional fast Fourier transforms. This is exact and a few orders of magnitude faster than previously used numerical approaches. Numerical results of the new method are in excellent agreement with the standard quadrature integration method. This fast model evaluation can in principle be extended to higher loop order where existing codes become painfully slow. Our approach follows by writing higher order corrections to the 2-point correlation function as, e.g., the correlation between two second-order fields or the correlation between a linear and a third-order field. These are then decomposed into products of correlations of linear fields and derivatives of linear fields. The method can also be viewed as evaluating three-dimensional Fourier space convolutions using products in configuration space, which may also be useful in other contexts where similar integrals appear.

  20. Large-Scale, Exhaustive Lattice-Based Structural Auditing of SNOMED CT

    NASA Astrophysics Data System (ADS)

    Zhang, Guo-Qiang

    One criterion for the well-formedness of ontologies is that their hierarchical structure form a lattice. Formal Concept Analysis (FCA) has been used as a technique for assessing the quality of ontologies, but is not scalable to large ontologies such as SNOMED CT. We developed a methodology called Lattice-based Structural Auditing (LaSA), for auditing biomedical ontologies, implemented through automated SPARQL queries, in order to exhaustively identify all non-lattice pairs in SNOMED CT. The percentage of non-lattice pairs ranges from 0 to 1.66 among the 19 SNOMED CT hierarchies. Preliminary manual inspection of a limited portion of the 518K non-lattice pairs, among over 34 million candidate pairs, revealed inconsistent use of precoordination in SNOMED CT, but also a number of false positives. Our results are consistent with those based on FCA, with the advantage that the LaSA computational pipeline is scalable and applicable to ontological systems consisting mostly of taxonomic links. This work is based on collaboration with Olivier Bodenreider from the National Library of Medicine, Bethesda, USA.

  1. Cosmic cartography of the large-scale structure with Sloan Digital Sky Survey data release 6

    NASA Astrophysics Data System (ADS)

    Kitaura, Francisco S.; Jasche, Jens; Li, Cheng; Enßlin, Torsten A.; Metcalf, R. Benton; Wandelt, Benjamin D.; Lemson, Gerard; White, Simon D. M.

    2009-11-01

    We present the largest Wiener reconstruction of the cosmic density field made to date. The reconstruction is based on the Sloan Digital Sky Survey (SDSS) data release 6 covering the northern Galactic cap. We use a novel supersampling algorithm to suppress aliasing effects and a Krylov-space inversion method to enable high performance with high resolution. These techniques are implemented in the ARGO computer code. We reconstruct the field over a 500Mpc cube with Mpc grid resolution while accounting for both the angular and the radial selection functions of the SDSS, and the shot noise giving an effective resolution of the order of ~10Mpc. In addition, we correct for the redshift distortions in the linear and non-linear regimes in an approximate way. We show that the commonly used method of inverse weighting the galaxies by the corresponding selection function heads to excess noise in regions where the density of the observed galaxies is small. It is more accurate and conservative to adopt a Bayesian framework in which we model the galaxy selection/detection process to be Poisson binomial. This results in heavier smoothing in regions of reduced sampling density. Our results show a complex cosmic web structure with huge void regions indicating that the recovered matter distribution is highly non-Gaussian. Filamentary structures are clearly visible on scales of up to ~20Mpc. We also calculate the statistical distribution of density after smoothing the reconstruction with Gaussian kernels of different radii rS and find good agreement with a lognormal distribution for 10Mpc <~ rS <~ 30Mpc.

  2. The Muenster Red Sky Survey: Large-scale structures in the universe

    NASA Astrophysics Data System (ADS)

    Ungruhe, R.; Seitter, W. C.; Duerbeck, H. W.

    2003-01-01

    We present a large-scale galaxy catalogue for the red spectral region which covers an area of 5 000 square degrees. It contains positions, red magnitudes, radii, ellipticities and position angles of about 5.5 million galaxies. Together with the APM catalogue (4,300 square degrees) in the blue spectral region, this catalogue forms at present the largest coherent data base for cosmological investigations in the southern hemisphere. 217 ESO Southern Sky Atlas R Schmidt plates with galactic latitudes -45 degrees were digitized with the two PDS microdensitometers of the Astronomisches Institut Münster, with a step width of 15 microns, corresponding to 1.01 arcseconds per pixel. All data were stored on different storage media and are available for further investigations. Suitable search parameters must be chosen in such a way that all objects are found on the plates, and that the percentage of artificial objects remains as low as possible. Based on two reference areas on different plates, a search threshold of 140 PDS density units and a minimum number of four pixels per object were chosen. The detected objects were stored, according to size, in frames of different size length. Each object was investigated in its frame, and 18 object parameters were determined. The classification of objects into stars, galaxies and perturbed objects was done with an automatic procedure which makes use of combinations of computed object parameters. In the first step, the perturbed objects are removed from the catalogue. Double objects and noise objects can be excluded on the basis of symmetry properties, while for satellite trails, a new classification criterium based on apparent magnitude, effective radius and apparent ellipticity, was developed. For the remaining objects, a star/galaxy separation was carried out. For bright objects, the relation between apparent magnitude and effective radius serves as the discriminating property, for fainter objects, the relation between effective

  3. Impact of large-scale atmospheric refractive structures on optical wave propagation

    NASA Astrophysics Data System (ADS)

    Nunalee, Christopher G.; He, Ping; Basu, Sukanta; Vorontsov, Mikhail A.; Fiorino, Steven T.

    2014-10-01

    Conventional techniques used to model optical wave propagation through the Earth's atmosphere typically as- sume flow fields based on various empirical relationships. Unfortunately, these synthetic refractive index fields do not take into account the influence of transient macroscale and mesoscale (i.e. larger than turbulent microscale) atmospheric phenomena. Nevertheless, a number of atmospheric structures that are characterized by various spatial and temporal scales exist which have the potential to significantly impact refractive index fields, thereby resulting dramatic impacts on optical wave propagation characteristics. In this paper, we analyze a subset of spatio-temporal dynamics found to strongly affect optical waves propagating through these atmospheric struc- tures. Analysis of wave propagation was performed in the geometrical optics approximation using a standard ray tracing technique. Using a numerical weather prediction (NWP) approach, we simulate multiple realistic atmospheric events (e.g., island wakes, low-level jets, etc.), and estimate the associated refractivity fields prior to performing ray tracing simulations. By coupling NWP model output with ray tracing simulations, we demon- strate the ability to quantitatively assess the potential impacts of coherent atmospheric phenomena on optical ray propagation. Our results show a strong impact of spatio-temporal characteristics of the refractive index field on optical ray trajectories. Such correlations validate the effectiveness of NWP models as they offer a more comprehensive representation of atmospheric refractivity fields compared to conventional methods based on the assumption of horizontal homogeneity.

  4. Maximal freedom at minimum cost: linear large-scale structure in general modifications of gravity

    SciTech Connect

    Bellini, Emilio; Sawicki, Ignacy E-mail: ignacy.sawicki@outlook.com

    2014-07-01

    We present a turnkey solution, ready for implementation in numerical codes, for the study of linear structure formation in general scalar-tensor models involving a single universally coupled scalar field. We show that the totality of cosmological information on the gravitational sector can be compressed — without any redundancy — into five independent and arbitrary functions of time only and one constant. These describe physical properties of the universe: the observable background expansion history, fractional matter density today, and four functions of time describing the properties of the dark energy. We show that two of those dark-energy property functions control the existence of anisotropic stress, the other two — dark-energy clustering, both of which are can be scale-dependent. All these properties can in principle be measured, but no information on the underlying theory of acceleration beyond this can be obtained. We present a translation between popular models of late-time acceleration (e.g. perfect fluids, f(R), kinetic gravity braiding, galileons), as well as the effective field theory framework, and our formulation. In this way, implementing this formulation numerically would give a single tool which could consistently test the majority of models of late-time acceleration heretofore proposed.

  5. Chaotic inflationary universe and the anisotropy of the large-scale structure

    NASA Technical Reports Server (NTRS)

    Chibisov, G. V.; Shtanov, Yu. V.

    1991-01-01

    It has been realized that the inflationary universe is in fact chaotic, that globally it is strongly inhomogeneous, and that the inflation in the universe as a whole is eternal. In such a picture the region available to modern observations is just a tiny part of the universe, in which inflation finished about 10(exp 10) years ago. In spite of the great popularity of the chaotic inflationary universe models, it is usually taken for granted that their specific features (such as strong global inhomogeneity of the universe) can hardly lead to any observable consequences. The argument is that all that is seen is just a tiny part of the universe, a region about 10(exp 28) cm, and the typical scales of considerable inhomogeneities are much greater than this size. In contrast to this opinion, an attempt is made to show that such observable consequences can really exist. The phenomenon closely connected with the origin of structure (galaxies, clusters, etc.) in the observable region is discussed. The main idea considered is the vacuum fluctuations evolution on the inhomogeneous background.

  6. Constraints on neutrino masses from the study of the nearby large-scale structure and galaxy cluster counts

    NASA Astrophysics Data System (ADS)

    Böhringer, Hans; Chon, Gayoung

    2016-07-01

    The high precision measurements of the cosmic microwave background by the Planck survey yielded tight constraints on cosmological parameters and the statistics of the density fluctuations at the time of recombination. This provides the means for a critical study of structure formation in the Universe by comparing the microwave background results with present epoch measurements of the cosmic large-scale structure. It can reveal subtle effects such as how different forms of Dark Matter may modify structure growth. Currently most interesting is the damping effect of structure growth by massive neutrinos. Different observations of low redshift matter density fluctuations provided evidence for a signature of massive neutrinos. Here we discuss the study of the cosmic large-scale structure with a complete sample of nearby, X-ray luminous clusters from our REFLEX cluster survey. From the observed X-ray luminosity function and its reproduction for different cosmological models, we obtain tight constraints on the cosmological parameters describing the matter density, Ωm, and the density fluctuation amplitude, σ8. A comparison of these constraints with the Planck results shows a discrepancy in the framework of a pure ΛCDM model, but the results can be reconciled, if we allow for a neutrino mass in the range of 0.17 eV to 0.7 eV. Also some others, but not all of the observations of the nearby large-scale structure provide evidence or trends for signatures of massive neutrinos. With further improvement in the systematics and future survey projects, these indications will develop into a definitive measurement of neutrino masses.

  7. Constraints on neutrino masses from the study of the nearby large-scale structure and galaxy cluster counts

    NASA Astrophysics Data System (ADS)

    Böhringer, Hans; Chon, Gayoung

    2016-07-01

    The high precision measurements of the cosmic microwave background by the Planck survey yielded tight constraints on cosmological parameters and the statistics of the density fluctuations at the time of recombination. This provides the means for a critical study of structure formation in the Universe by comparing the microwave background results with present epoch measurements of the cosmic large-scale structure. It can reveal subtle effects such as how different forms of Dark Matter may modify structure growth. Currently most interesting is the damping effect of structure growth by massive neutrinos. Different observations of low redshift matter density fluctuations provided evidence for a signature of massive neutrinos. Here we discuss the study of the cosmic large-scale structure with a complete sample of nearby, X-ray luminous clusters from our REFLEX cluster survey. From the observed X-ray luminosity function and its reproduction for different cosmological models, we obtain tight constraints on the cosmological parameters describing the matter density, Ωm, and the density fluctuation amplitude, σ8. A comparison of these constraints with the Planck results shows a discrepancy in the framework of a pure ΛCDM model, but the results can be reconciled, if we allow for a neutrino mass in the range of 0.17 eV to 0.7 eV. Also some others, but not all of the observations of the nearby large-scale structure provide evidence or trends for signatures of massive neutrinos. With further improvement in the systematics and future survey projects, these indications will develop into a definitive measurement of neutrino masses.

  8. Testing LSST Dither Strategies for Survey Uniformity and Large-scale Structure Systematics

    NASA Astrophysics Data System (ADS)

    Awan, Humna; Gawiser, Eric; Kurczynski, Peter; Jones, R. Lynne; Zhan, Hu; Padilla, Nelson D.; Muñoz Arancibia, Alejandra M.; Orsi, Alvaro; Cora, Sofía A.; Yoachim, Peter

    2016-09-01

    The Large Synoptic Survey Telescope (LSST) will survey the southern sky from 2022-2032 with unprecedented detail. Since the observing strategy can lead to artifacts in the data, we investigate the effects of telescope-pointing offsets (called dithers) on the r-band coadded 5σ depth yielded after the 10-year survey. We analyze this survey depth for several geometric patterns of dithers (e.g., random, hexagonal lattice, spiral) with amplitudes as large as the radius of the LSST field of view, implemented on different timescales (per season, per night, per visit). Our results illustrate that per night and per visit dither assignments are more effective than per season assignments. Also, we find that some dither geometries (e.g., hexagonal lattice) are particularly sensitive to the timescale on which the dithers are implemented, while others like random dithers perform well on all timescales. We then model the propagation of depth variations to artificial fluctuations in galaxy counts, which are a systematic for LSS studies. We calculate the bias in galaxy counts caused by the observing strategy accounting for photometric calibration uncertainties, dust extinction, and magnitude cuts; uncertainties in this bias limit our ability to account for structure induced by the observing strategy. We find that after 10 years of the LSST survey, the best dither strategies lead to uncertainties in this bias that are smaller than the minimum statistical floor for a galaxy catalog as deep as r < 27.5. A few of these strategies bring the uncertainties close to the statistical floor for r < 25.7 after the first year of survey.

  9. Cosmological N-body Simulation of Galaxy and Large-Scale Structure Formation: The Gravity Frontier

    NASA Astrophysics Data System (ADS)

    Klypin, Anatoly

    2015-04-01

    One of the first N-body simulations done almost 50 years ago had only 200 self-gravitating particles. Even this first baby step made substantial impact on understanding how astronomical objects should form. Now powerful supercomputers and new algorithms allow astronomers produce N-body simulations that employ up to a trillion dark matter particles and produce vital theoretical predictions regarding formation, evolution, structure and statistics of objects ranging from dwarf galaxies to clusters and superclusters of galaxies. With only gravity involved in these theoretical models, one would naively expect that by now we should know everything we need about N-body dynamics of cosmological fluctuations. Not the case. It appears that the Universe was not cooperative and gave us divergencies in the initial conditions generated during the Inflation epoch and subsequent expansion of the Universe - the infinite phase-space density and divergent density fluctuations. Ever increasing observational demands on statistics and accuracy of theoretical predictions is another driving force for more realistic and larger N-body simulations. Large current and new planned observational projects such as BOSS, eBOSS, Euclid, LSST will bring information on spatial distribution, motion, and properties of millions of galaxies at different redshifts. Direct simulations of evolution of gas and formation of stars for millions of forming galaxies will not be available for years leaving astronomers with the only option - to develop methods to combine large N-body simulations with models of galaxy formation to produce accurate theoretical predictions. I will discuss the current status of the field and directions of its development.

  10. Structurally controlled 'teleconnection' of large-scale mass wasting (Eastern Alps)

    NASA Astrophysics Data System (ADS)

    Ostermann, Marc; Sanders, Diethard

    2015-04-01

    In the Brenner Pass area (Eastern Alps) , closely ahead of the most northward outlier ('nose') of the Southern-Alpine continental indenter, abundant deep-seated gravitational slope deformations and a cluster of five post-glacial rockslides are present. The indenter of roughly triangular shape formed during Neogene collision of the Southern-Alpine basement with the Eastern-Alpine nappe stack. Compression by the indenter activated a N-S striking, roughly W-E extensional fault northward of the nose of the indenter (Brenner-normal fault; BNF), and lengthened the Eastern-Alpine edifice along a set of major strike-slip faults. These fault zones display high seismicity, and are the preferred locus of catastrophic rapid slope failures (rockslides, rock avalanches) and deep-seated gravitational slope deformations. The seismotectonic stress field, earthquake activity, and structural data all indicate that the South-Alpine indenter still - or again - exerts compression; in consequence, the northward adjacent Eastern Alps are subject mainly to extension and strike-slip. For the rockslides in the Brenner Pass area, and for the deep-seated gravitational slope deformations, the fault zones combined with high seismic activity predispose massive slope failures. Structural data and earthquakes mainly record ~W-E extension within an Eastern Alpine basement block (Oetztal-Stubai basement complex) in the hangingwall of the BNF. In the Northern Calcareous Alps NW of the Oetztal-Stubai basement complex, dextral faults provide defacement scars for large rockfalls and rockslides. Towards the West, these dextral faults merge into a NNW-SSE striking sinistral fault zone that, in turn, displays high seismic activity and is the locus of another rockslide cluster (Fern Pass cluster; Prager et al., 2008). By its kinematics dictated by the South-Alpine indenter, the relatively rigid Oetztal-Stubai basement block relays faulting and associated mass-wasting over a N-S distance of more than 60

  11. Searching for filaments and large-scale structure around DAFT/FADA clusters

    NASA Astrophysics Data System (ADS)

    Durret, F.; Márquez, I.; Acebrón, A.; Adami, C.; Cabrera-Lavers, A.; Capelato, H.; Martinet, N.; Sarron, F.; Ulmer, M. P.

    2016-04-01

    Context. Clusters of galaxies are located at the intersection of cosmic filaments and are still accreting galaxies and groups along these preferential directions. However, because of their relatively low contrast on the sky, filaments are difficult to detect (unless a large amount of spectroscopic data are available), and unambiguous detections have been limited until now to relatively low redshifts (z< ~ 0.3). Aims: This project is aimed at searching for extensions and filaments around clusters, traced by galaxies selected to be at the cluster redshift based on the red sequence. In the 0.4 structures detected in this way. Whenever possible, we identified the other structures detected on the density maps with clusters listed in NED. Results: We find clear elongations in twelve clusters out of thirty, with sizes that can reach up to 7.6 Mpc. Eleven other clusters have neighbouring structures, but the zones linking them are not detected in the density maps at a 3σ level. Three clusters show no extended structure and no neighbours, and four clusters are of too low contrast to be clearly visible on our density maps. Conclusions: The simple method we have applied appears to work well to show the existence of filaments and/or extensions around a number of clusters in the redshift range 0.4 large cluster samples such as the clusters detected in

  12. Evolution of large-scale plasma structures in comets: Kinematics and physics

    NASA Technical Reports Server (NTRS)

    Brandt, John C.

    1993-01-01

    Cometary and solar wind data from December 1985 through April 1986 are presented for the purpose of determining the solar wind conditions associated with comet plasma tail disconnection events (DE's). The cometary data are from The International Halley Watch Atlas of Large-Scale Phenomena (Brandt, Niedner, and Rahe, 1992). In addition, we present the kinematic analysis of 4 DE's, those of Dec. 13.5 and 31.2, 1985, and Feb. 21.7 and 28.7, 1986. The circumstances of these DE's clearly illustrate the need to analyze DE's in groups. In situ solar wind measurements from IMP-8, ICE, and PVO were used to construct the variation of solar wind speed, density, and dynamic pressure during this interval. Data from these same spacecraft plus Vega-1 were used to determine the time of 48 current sheet crossings. These data were fitted to heliospheric current sheet curves extrapolated from the corona into the heliosphere in order to determine the best-fit source surface radius for each Carrington rotation. Comparison of the solar wind conditions and 16 DE's in Halley's comet (the four DE's discussed in this paper and 12 DE's in the literature) leaves little doubt that DE's are associated primarily with crossings of the heliospheric current sheet and apparently not with any other property of the solar wind. If we assume that there is a single or primary physical mechanism and that Halley's DE's are representative, efforts at simulation should concentrate on conditions at current sheet crossings. The mechanisms consistent with this result are sunward magnetic reconnection and tailward magnetic reconnection, if tailward reconnection can be triggered by the sector boundary crossing.

  13. VERTICAL STRUCTURE OF STATIONARY ACCRETION DISKS WITH A LARGE-SCALE MAGNETIC FIELD

    SciTech Connect

    Bisnovatyi-Kogan, G. S.; Lovelace, R. V. E. E-mail: RVL1@cornell.edu

    2012-05-10

    In earlier works we pointed out that the disk's surface layers are non-turbulent and thus highly conducting (or non-diffusive) because the hydrodynamic and/or magnetorotational instabilities are suppressed high in the disk where the magnetic and radiation pressures are larger than the plasma thermal pressure. Here, we calculate the vertical profiles of the stationary accretion flows (with radial and azimuthal components), and the profiles of the large-scale, magnetic field taking into account the turbulent viscosity and diffusivity and the fact that the turbulence vanishes at the surface of the disk. Also, here we require that the radial accretion speed be zero at the disk's surface and we assume that the ratio of the turbulent viscosity to the turbulent magnetic diffusivity is of order unity. Thus, at the disk's surface there are three boundary conditions. As a result, for a fixed dimensionless viscosity {alpha}-value, we find that there is a definite relation between the ratio R of the accretion power going into magnetic disk winds to the viscous power dissipation and the midplane plasma-{beta}, which is the ratio of the plasma to magnetic pressure in the disk. For a specific disk model with R of order unity we find that the critical value required for a stationary solution is {beta}{sub c} Almost-Equal-To 2.4r/({alpha}h), where h is the disk's half thickness. For weaker magnetic fields, {beta} > {beta}{sub c}, we argue that the poloidal field will advect outward while for {beta} < {beta}{sub c} it will advect inward. Alternatively, if the disk wind is negligible (R<<1), there are stationary solutions with {beta} >> {beta}{sub c}.

  14. LYα FOREST TOMOGRAPHY FROM BACKGROUND GALAXIES: THE FIRST MEGAPARSEC-RESOLUTION LARGE-SCALE STRUCTURE MAP AT z > 2

    SciTech Connect

    Lee, Khee-Gan; Hennawi, Joseph F.; Eilers, Anna-Christina; Stark, Casey; White, Martin; Prochaska, J. Xavier; Schlegel, David J.; Arinyo-i-Prats, Andreu; Suzuki, Nao; Croft, Rupert A. C.; Caputi, Karina I.; Cassata, Paolo; Ilbert, Olivier; Le Brun, Vincent; Le Fèvre, Olivier; Garilli, Bianca; Koekemoer, Anton M.; Maccagni, Dario; Nugent, Peter; and others

    2014-11-01

    We present the first observations of foreground Lyα forest absorption from high-redshift galaxies, targeting 24 star-forming galaxies (SFGs) with z ∼ 2.3-2.8 within a 5' × 14' region of the COSMOS field. The transverse sightline separation is ∼2 h {sup –1} Mpc comoving, allowing us to create a tomographic reconstruction of the three-dimensional (3D) Lyα forest absorption field over the redshift range 2.20 ≤ z ≤ 2.45. The resulting map covers 6 h {sup –1} Mpc × 14 h {sup –1} Mpc in the transverse plane and 230 h {sup –1} Mpc along the line of sight with a spatial resolution of ≈3.5 h {sup –1} Mpc, and is the first high-fidelity map of a large-scale structure on ∼Mpc scales at z > 2. Our map reveals significant structures with ≳ 10 h {sup –1} Mpc extent, including several spanning the entire transverse breadth, providing qualitative evidence for the filamentary structures predicted to exist in the high-redshift cosmic web. Simulated reconstructions with the same sightline sampling, spectral resolution, and signal-to-noise ratio recover the salient structures present in the underlying 3D absorption fields. Using data from other surveys, we identified 18 galaxies with known redshifts coeval with our map volume, enabling a direct comparison with our tomographic map. This shows that galaxies preferentially occupy high-density regions, in qualitative agreement with the same comparison applied to simulations. Our results establish the feasibility of the CLAMATO survey, which aims to obtain Lyα forest spectra for ∼1000 SFGs over ∼1 deg{sup 2} of the COSMOS field, in order to map out the intergalactic medium large-scale structure at (z) ∼ 2.3 over a large volume (100 h {sup –1} Mpc){sup 3}.

  15. Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

    PubMed

    Dileep, Vishnu; Rivera-Mulia, Juan Carlos; Sima, Jiao; Gilbert, David M

    2015-01-01

    Chromosome architecture has received a lot of attention since the recent development of genome-scale methods to measure chromatin interactions (Hi-C), enabling the first sequence-based models of chromosome tertiary structure. A view has emerged of chromosomes as a string of structural units (topologically associating domains; TADs) whose boundaries persist through the cell cycle and development. TADs with similar chromatin states tend to aggregate, forming spatially segregated chromatin compartments. However, high-resolution Hi-C has revealed substructure within TADs (subTADs) that poses a challenge for models that attribute significance to structural units at any given scale. More than 20 years ago, the DNA replication field independently identified stable structural (and functional) units of chromosomes (replication foci) as well as spatially segregated chromatin compartments (early and late foci), but lacked the means to link these units to genomic map units. Genome-wide studies of replication timing (RT) have now merged these two disciplines by identifying individual units of replication regulation (replication domains; RDs) that correspond to TADs and are arranged in 3D to form spatiotemporally segregated subnuclear compartments. Furthermore, classifying RDs/TADs by their constitutive versus developmentally regulated RT has revealed distinct classes of chromatin organization, providing unexpected insight into the relationship between large-scale chromosome structure and function. PMID:26590169

  16. Automated tracing of open-field coronal structures for an optimized large-scale magnetic field reconstruction

    NASA Astrophysics Data System (ADS)

    Uritsky, V. M.; Davila, J. M.; Jones, S. I.

    2014-12-01

    Solar Probe Plus and Solar Orbiter will provide detailed measurements in the inner heliosphere magnetically connected with the topologically complex and eruptive solar corona. Interpretation of these measurements will require accurate reconstruction of the large-scale coronal magnetic field. In a related presentation by S. Jones et al., we argue that such reconstruction can be performed using photospheric extrapolation methods constrained by white-light coronagraph images. Here, we present the image-processing component of this project dealing with an automated segmentation of fan-like coronal loop structures. In contrast to the existing segmentation codes designed for detecting small-scale closed loops in the vicinity of active regions, we focus on the large-scale geometry of the open-field coronal features observed at significant radial distances from the solar surface. The coronagraph images used for the loop segmentation are transformed into a polar coordinate system and undergo radial detrending and initial noise reduction. The preprocessed images are subject to an adaptive second order differentiation combining radial and azimuthal directions. An adjustable thresholding technique is applied to identify candidate coronagraph features associated with the large-scale coronal field. A blob detection algorithm is used to extract valid features and discard noisy data pixels. The obtained features are interpolated using higher-order polynomials which are used to derive empirical directional constraints for magnetic field extrapolation procedures based on photospheric magnetograms.

  17. A coarse grained perturbation theory for the Large Scale Structure, with cosmology and time independence in the UV

    SciTech Connect

    Manzotti, Alessandro; Peloso, Marco; Pietroni, Massimo; Viel, Matteo; Villaescusa-Navarro, Francisco E-mail: peloso@physics.umn.edu E-mail: viel@oats.inaf.it

    2014-09-01

    Standard cosmological perturbation theory (SPT) for the Large Scale Structure (LSS) of the Universe fails at small scales (UV) due to strong nonlinearities and to multistreaming effects. In ref. [1] a new framework was proposed in which the large scales (IR) are treated perturbatively while the information on the UV, mainly small scale velocity dispersion, is obtained by nonlinear methods like N-body simulations. Here we develop this approach, showing that it is possible to reproduce the fully nonlinear power spectrum (PS) by combining a simple (and fast) 1-loop computation for the IR scales and the measurement of a single, dominant, correlator from N-body simulations for the UV ones. We measure this correlator for a suite of seven different cosmologies, and we show that its inclusion in our perturbation scheme reproduces the fully non-linear PS with percent level accuracy, for wave numbers up to k∼ 0.4 h Mpc{sup -1} down to 0z=. We then show that, once this correlator has been measured in a given cosmology, there is no need to run a new simulation for a different cosmology in the suite. Indeed, by rescaling this correlator by a proper function computable in SPT, the reconstruction procedure works also for the other cosmologies and for all redshifts, with comparable accuracy. Finally, we clarify the relation of this approach to the Effective Field Theory methods recently proposed in the LSS context.

  18. The cosmic microwave background radiation as a probe of the large-scale structure of the universe

    NASA Technical Reports Server (NTRS)

    Silk, J.

    1982-01-01

    Cosmological and astrophysical implications of large scale fluctuations in the cosmic microwave background are discussed, with attention given to galaxy formation. Angular anisotropies are mentioned as yielding information on the matter distribution during early epochs, characterized by inhomogeneities which persist on large scales. Factors such as the curvature of the universe and the hypothesis of massive neutrinos with m more than 30 eV affect the observed anomalies, which can be traced backwards to determine the source of nonlinear structures. Neutrino rest masses of less than a few eV imply isothermal fluctuations in the initial conditions, while gaseous fragmentation of adiabatic pancakes does provide a basis for an acceptable galaxy formation and clustering scenario. However, the primordial isothermal fluctuations fit well with observational constraints imposed by a neutrino-dominated universe.

  19. The Muenster Red Sky Survey: Large-scale structures in the universe

    NASA Astrophysics Data System (ADS)

    Ungruhe, R.; Seitter, W. C.; Duerbeck, H. W.

    2003-01-01

    We present a large-scale galaxy catalogue for the red spectral region which covers an area of 5 000 square degrees. It contains positions, red magnitudes, radii, ellipticities and position angles of about 5.5 million galaxies. Together with the APM catalogue (4,300 square degrees) in the blue spectral region, this catalogue forms at present the largest coherent data base for cosmological investigations in the southern hemisphere. 217 ESO Southern Sky Atlas R Schmidt plates with galactic latitudes -45 degrees were digitized with the two PDS microdensitometers of the Astronomisches Institut Münster, with a step width of 15 microns, corresponding to 1.01 arcseconds per pixel. All data were stored on different storage media and are available for further investigations. Suitable search parameters must be chosen in such a way that all objects are found on the plates, and that the percentage of artificial objects remains as low as possible. Based on two reference areas on different plates, a search threshold of 140 PDS density units and a minimum number of four pixels per object were chosen. The detected objects were stored, according to size, in frames of different size length. Each object was investigated in its frame, and 18 object parameters were determined. The classification of objects into stars, galaxies and perturbed objects was done with an automatic procedure which makes use of combinations of computed object parameters. In the first step, the perturbed objects are removed from the catalogue. Double objects and noise objects can be excluded on the basis of symmetry properties, while for satellite trails, a new classification criterium based on apparent magnitude, effective radius and apparent ellipticity, was developed. For the remaining objects, a star/galaxy separation was carried out. For bright objects, the relation between apparent magnitude and effective radius serves as the discriminating property, for fainter objects, the relation between effective

  20. Observational Requirements for Lyα Forest Tomographic Mapping of Large-scale Structure at z ~ 2

    NASA Astrophysics Data System (ADS)

    Lee, Khee-Gan; Hennawi, Joseph F.; White, Martin; Croft, Rupert A. C.; Ozbek, Melih

    2014-06-01

    The z >~ 2 Lyα forest traces the underlying dark matter distribution on large scales and, given sufficient sightlines, can be used to create three-dimensional (3D) maps of large-scale structures. We examine the observational requirements to construct such maps and estimate the signal-to-noise as a function of exposure time and sightline density. Sightline densities at z = 2.25 are n los ≈ [360, 1200, 3300] deg-2 at limiting magnitudes of g = [24.0, 24.5, 25.0], resulting in transverse sightline separations of langd rang ≈ [3.6, 1.9, 1.2] h -1 Mpc, which roughly sets the reconstruction scale. We simulate these reconstructions using mock spectra with realistic noise properties and find that spectra with S/N ≈ 4 per angstrom can be used to generate maps that clearly trace the underlying dark matter at overdensities of ρ/langρrang ~ 1. For the VLT/VIMOS spectrograph, exposure times t exp = [4, 6, 10] hr are sufficient for maps with spatial resolution epsilon3D = [5.0, 3.2, 2.3] h -1 Mpc. Assuming ~250 h -1 Mpc is probed along the line of sight, 1 deg2 of survey area would cover a comoving volume of ≈106 h -3 Mpc3 at langzrang ~ 2.3, enabling the efficient mapping of large volumes with 8-10 m telescopes. These maps could be used to study galaxy environments, the topology of large-scale structures at high z, and to detect proto-clusters.

  1. Design of a large-scale vertical open-structure cylindrical shield employing magnetic shaking

    NASA Astrophysics Data System (ADS)

    Sasada, Ichiro; Paperno, Eugene; Koide, Hiroyuki

    2000-05-01

    The shield developed consists of four concentric magnetic shells positioned on the outer surfaces of paper pipes of ˜2.7 m length, ˜1 cm thickness, and with outer diameters of 67, 72, 82.2, and 97.4 cm, respectively. The first (innermost) shell is a Permalloy shell of 2.1 mm thickness and 1.8 m length. The second, third, and fourth shells are made of ˜50 mm wide, ˜22 μm thick Metglas 2705M amorphous ribbons. The second shell, which is a 2.2 m long helical structure, consists of 48 layers of Metglas ribbon divided into four equal sections by ˜1 cm thick flexible Styrofoam sheets. The third shell, 2.43 m in length, and fourth shell, 2.7 m in length, consist of 26 and 30 layers, respectively. A thin polyethylene film is tightly wound on each section of the second shell as well as on the third and fourth shells. It increases the friction between the Metglas ribbons and prevents them from sliding down; there is no foreign material in between the layers of the ribbon. All shells are enclosed by toroidal coils which are used to demagnetize the Permalloy shell and to apply magnetic shaking to the amorphous magnetic shells. The gross weight of the shield is ˜400 kg including ˜65 kg of Permalloy and ˜110 kg of Metglas. An ˜105 transverse shielding factor and a relatively large ˜380 axial shielding factor, despite the effect of the openings, are achieved for a 10 μT external field in the extremely low frequency region. The measured shaking leakage and magnetic noise field strengths at the shield's center are less than 1 nT. As these low field strengths, it is possible to operate highly sensitive SQUID magnetometers for biomagnetic measurements.

  2. Conditional sampling technique to test the applicability of the Taylor hypothesis for the large-scale coherent structures

    NASA Technical Reports Server (NTRS)

    Hussain, A. K. M. F.

    1980-01-01

    Comparisons of the distributions of large scale structures in turbulent flow with distributions based on time dependent signals from stationary probes and the Taylor hypothesis are presented. The study investigated an area in the near field of a 7.62 cm circular air jet at a Re of 32,000, specifically having coherent structures through small-amplitude controlled excitation and stable vortex pairing in the jet column mode. Hot-wire and X-wire anemometry were employed to establish phase averaged spatial distributions of longitudinal and lateral velocities, coherent Reynolds stress and vorticity, background turbulent intensities, streamlines and pseudo-stream functions. The Taylor hypothesis was used to calculate spatial distributions of the phase-averaged properties, with results indicating that the usage of the local time-average velocity or streamwise velocity produces large distortions.

  3. Discovery of small-scale-structure in the large molecule/dust distribution in the diffuse ISM

    NASA Astrophysics Data System (ADS)

    Cordiner, Martin A.; Fossey, Stephen J.; Sarre, Peter J.

    There is mounting evidence that far from being homogeneously distributed, interstellar matter can have a clumpy or filamentary structure on the scale of 10s to a few 1000s of AU and which is commonly described as small scale structure (SSS). Initially confined to VLBI HI observations and HI observations of high-velocity pulsars, evidence for SSS has also come indirectly from molecular radio studies of e.g. HCO+ and infrared absorption by H3+. Much of the recent data on SSS has been obtained through optical/UV detection of atomic and diatomic molecular lines. Is there small scale structure in the large molecule/dust distribution? While this question could in principle be explored by measuring differences in the interstellar extinction towards the components of binary stars, in practice this would be difficult. Rather we chose to investigate this by recording very high signal-to-noise spectra of diffuse interstellar absorption bands. Although the carriers remain unidentified, the diffuse bands are generally considered to be tracers of the large molecule/dust distribution and scale well with reddening. Using the Anglo-Australian Telescope we have made UCLES observations of pairs of stars with separations ranging between 500 and 30000 AU. The signal-to-noise achieved was up to 2000, thus allowing variations in central depth of less than a few tenths of a percent to be discernible. Striking differences in diffuse band strengths for closely spaced lines of sight are found showing clearly that there exists small-scale-structure in the large molecule/dust distribution. For example, in the Ophiuchus star-formation region the central depths for the λ6614 diffuse band towards the ρ Oph stars A, B, C and D/E all differ and range between 0.966 and 0.930. Further interesting behaviour is found when comparing the relative strengths of diffuse bands between closely parallel lines of sight. Taking again the ρ Oph group, for λ5797 the strengths follow the order DE > B > C > A

  4. Large-scale experimental and theoretical study of graphene grain boundary structures

    NASA Astrophysics Data System (ADS)

    Ophus, Colin; Shekhawat, Ashivni; Rasool, Haider; Zettl, Alex

    2015-11-01

    We have characterized the structure of 176 different single-layer graphene grain boundaries grown with chemical vapor deposition using >1000 experimental high-resolution transmission electron microscopy images using a semiautomated structure processing routine. We introduce an algorithm for generating grain boundary structures for a class of hexagonal two-dimensional materials and use this algorithm and molecular dynamics to simulate the structure of >79 000 linear graphene grain boundaries covering 4122 unique orientations distributed over the entire parameter space. The dislocation content and structural properties are extracted from all experimental and simulated boundaries, and various trends are explored. We find excellent agreement between the simulated and experimentally observed grain boundaries. Our analysis demonstrates the power of a statistically significant number of measurements as opposed to a small number of observations in atomic science.

  5. Scattering of electromagnetic waves by vortex density structures associated with interchange instability: Analytical and large scale plasma simulation results

    SciTech Connect

    Sotnikov, V.; Kim, T.; Lundberg, J.; Paraschiv, I.; Mehlhorn, T. A.

    2014-05-15

    The presence of plasma turbulence can strongly influence propagation properties of electromagnetic signals used for surveillance and communication. In particular, we are interested in the generation of low frequency plasma density irregularities in the form of coherent vortex structures. Interchange or flute type density irregularities in magnetized plasma are associated with Rayleigh-Taylor type instability. These types of density irregularities play an important role in refraction and scattering of high frequency electromagnetic signals propagating in the earth ionosphere, in high energy density physics, and in many other applications. We will discuss scattering of high frequency electromagnetic waves on low frequency density irregularities due to the presence of vortex density structures associated with interchange instability. We will also present particle-in-cell simulation results of electromagnetic scattering on vortex type density structures using the large scale plasma code LSP and compare them with analytical results.

  6. Scattering of electromagnetic waves by vortex density structures associated with interchange instability: Analytical and large scale plasma simulation results

    NASA Astrophysics Data System (ADS)

    Sotnikov, V.; Kim, T.; Lundberg, J.; Paraschiv, I.; Mehlhorn, T. A.

    2014-05-01

    The presence of plasma turbulence can strongly influence propagation properties of electromagnetic signals used for surveillance and communication. In particular, we are interested in the generation of low frequency plasma density irregularities in the form of coherent vortex structures. Interchange or flute type density irregularities in magnetized plasma are associated with Rayleigh-Taylor type instability. These types of density irregularities play an important role in refraction and scattering of high frequency electromagnetic signals propagating in the earth ionosphere, in high energy density physics, and in many other applications. We will discuss scattering of high frequency electromagnetic waves on low frequency density irregularities due to the presence of vortex density structures associated with interchange instability. We will also present particle-in-cell simulation results of electromagnetic scattering on vortex type density structures using the large scale plasma code LSP and compare them with analytical results.

  7. Dynamic displacement measurement of large-scale structures based on the Lucas-Kanade template tracking algorithm

    NASA Astrophysics Data System (ADS)

    Guo, Jie; Zhu, Chang`an

    2016-01-01

    The development of optics and computer technologies enables the application of the vision-based technique that uses digital cameras to the displacement measurement of large-scale structures. Compared with traditional contact measurements, vision-based technique allows for remote measurement, has a non-intrusive characteristic, and does not necessitate mass introduction. In this study, a high-speed camera system is developed to complete the displacement measurement in real time. The system consists of a high-speed camera and a notebook computer. The high-speed camera can capture images at a speed of hundreds of frames per second. To process the captured images in computer, the Lucas-Kanade template tracking algorithm in the field of computer vision is introduced. Additionally, a modified inverse compositional algorithm is proposed to reduce the computing time of the original algorithm and improve the efficiency further. The modified algorithm can rapidly accomplish one displacement extraction within 1 ms without having to install any pre-designed target panel onto the structures in advance. The accuracy and the efficiency of the system in the remote measurement of dynamic displacement are demonstrated in the experiments on motion platform and sound barrier on suspension viaduct. Experimental results show that the proposed algorithm can extract accurate displacement signal and accomplish the vibration measurement of large-scale structures.

  8. Implications of cosmic strings with time-varying tension on the CMB and large scale structure

    SciTech Connect

    Ichikawa, Kazuhide; Takahashi, Tomo; Yamaguchi, Masahide

    2006-09-15

    We investigate cosmological evolution and implications of cosmic strings with time-dependent tension. We derive basic equations of time development of the correlation length and the velocity of such strings, based on the one-scale model. Then, we find that, in the case where the tension depends on some power of the cosmic time, cosmic strings with time-dependent tension goes into the scaling solution if the power is lower than a critical value. We also discuss cosmic microwave background anisotropy and matter power spectra produced by these strings. The constraints on their tensions from the Wilkinson microwave anisotropy probe (WMAP) 3 yr data and Sloan digital sky survey (SDSS) data are also given.

  9. Efficient and accurate linear algebraic methods for large-scale electronic structure calculations with nonorthogonal atomic orbitals

    NASA Astrophysics Data System (ADS)

    Teng, H.; Fujiwara, T.; Hoshi, T.; Sogabe, T.; Zhang, S.-L.; Yamamoto, S.

    2011-04-01

    The need for large-scale electronic structure calculations arises recently in the field of material physics, and efficient and accurate algebraic methods for large simultaneous linear equations become greatly important. We investigate the generalized shifted conjugate orthogonal conjugate gradient method, the generalized Lanczos method, and the generalized Arnoldi method. They are the solver methods of large simultaneous linear equations of the one-electron Schrödinger equation and map the whole Hilbert space to a small subspace called the Krylov subspace. These methods are applied to systems of fcc Au with the NRL tight-binding Hamiltonian [F. Kirchhoff , Phys. Rev. BJCOMEL1098-012110.1103/PhysRevB.63.195101 63, 195101 (2001)]. We compare results by these methods and the exact calculation and show them to be equally accurate. The system size dependence of the CPU time is also discussed. The generalized Lanczos method and the generalized Arnoldi method are the most suitable for the large-scale molecular dynamics simulations from the viewpoint of CPU time and memory size.

  10. Red, Straight, no bends: primordial power spectrum reconstruction from CMB and large-scale structure

    NASA Astrophysics Data System (ADS)

    Ravenni, Andrea; Verde, Licia; Cuesta, Antonio J.

    2016-08-01

    We present a minimally parametric, model independent reconstruction of the shape of the primordial power spectrum. Our smoothing spline technique is well-suited to search for smooth features such as deviations from scale invariance, and deviations from a power law such as running of the spectral index or small-scale power suppression. We use a comprehensive set of the state-of the art cosmological data: Planck observations of the temperature and polarisation anisotropies of the cosmic microwave background, WiggleZ and Sloan Digital Sky Survey Data Release 7 galaxy power spectra and the Canada-France-Hawaii Lensing Survey correlation function. This reconstruction strongly supports the evidence for a power law primordial power spectrum with a red tilt and disfavours deviations from a power law power spectrum including small-scale power suppression such as that induced by significantly massive neutrinos. This offers a powerful confirmation of the inflationary paradigm, justifying the adoption of the inflationary prior in cosmological analyses.

  11. Histone Recognition and Large-Scale Structural Analysis of the Human Bromodomain Family

    PubMed Central

    Filippakopoulos, Panagis; Picaud, Sarah; Mangos, Maria; Keates, Tracy; Lambert, Jean-Philippe; Barsyte-Lovejoy, Dalia; Felletar, Ildiko; Volkmer, Rudolf; Müller, Susanne; Pawson, Tony; Gingras, Anne-Claude; Arrowsmith, Cheryl H.; Knapp, Stefan

    2012-01-01

    Summary Bromodomains (BRDs) are protein interaction modules that specifically recognize ε-N-lysine acetylation motifs, a key event in the reading process of epigenetic marks. The 61 BRDs in the human genome cluster into eight families based on structure/sequence similarity. Here, we present 29 high-resolution crystal structures, covering all BRD families. Comprehensive crossfamily structural analysis identifies conserved and family-specific structural features that are necessary for specific acetylation-dependent substrate recognition. Screening of more than 30 representative BRDs against systematic histone-peptide arrays identifies new BRD substrates and reveals a strong influence of flanking posttranslational modifications, such as acetylation and phosphorylation, suggesting that BRDs recognize combinations of marks rather than singly acetylated sequences. We further uncovered a structural mechanism for the simultaneous binding and recognition of diverse diacetyl-containing peptides by BRD4. These data provide a foundation for structure-based drug design of specific inhibitors for this emerging target family. PMID:22464331

  12. Large-Scale Production and Structural and Biophysical Characterizations of the Human Hepatitis B Virus Polymerase

    PubMed Central

    Vörös, Judit; Urbanek, Annika; Rautureau, Gilles Jean Philippe; O'Connor, Maggie; Fisher, Henry C.; Ashcroft, Alison E.

    2014-01-01

    ABSTRACT Hepatitis B virus (HBV) is a major human pathogen that causes serious liver disease and 600,000 deaths annually. Approved therapies for treating chronic HBV infections usually target the multifunctional viral polymerase (hPOL). Unfortunately, these therapies—broad-spectrum antivirals—are not general cures, have side effects, and cause viral resistance. While hPOL remains an attractive therapeutic target, it is notoriously difficult to express and purify in a soluble form at yields appropriate for structural studies. Thus, no empirical structural data exist for hPOL, and this impedes medicinal chemistry and rational lead discovery efforts targeting HBV. Here, we present an efficient strategy to overexpress recombinant hPOL domains in Escherichia coli, purifying them at high yield and solving their known aggregation tendencies. This allowed us to perform the first structural and biophysical characterizations of hPOL domains. Apo-hPOL domains adopt mainly α-helical structures with small amounts of β-sheet structures. Our recombinant material exhibited metal-dependent, reverse transcriptase activity in vitro, with metal binding modulating the hPOL structure. Calcomine orange 2RS, a small molecule that inhibits duck HBV POL activity, also inhibited the in vitro priming activity of recombinant hPOL. Our work paves the way for structural and biophysical characterizations of hPOL and should facilitate high-throughput lead discovery for HBV. IMPORTANCE The viral polymerase from human hepatitis B virus (hPOL) is a well-validated therapeutic target. However, recombinant hPOL has a well-deserved reputation for being extremely difficult to express in a soluble, active form in yields appropriate to the structural studies that usually play an important role in drug discovery programs. This has hindered the development of much-needed new antivirals for HBV. However, we have solved this problem and report here procedures for expressing recombinant hPOL domains in

  13. Robust classification of protein variation using structural modelling and large-scale data integration.

    PubMed

    Baugh, Evan H; Simmons-Edler, Riley; Müller, Christian L; Alford, Rebecca F; Volfovsky, Natalia; Lash, Alex E; Bonneau, Richard

    2016-04-01

    Existing methods for interpreting protein variation focus on annotating mutation pathogenicity rather than detailed interpretation of variant deleteriousness and frequently use only sequence-based or structure-based information. We present VIPUR, a computational framework that seamlessly integrates sequence analysis and structural modelling (using the Rosetta protein modelling suite) to identify and interpret deleterious protein variants. To train VIPUR, we collected 9477 protein variants with known effects on protein function from multiple organisms and curated structural models for each variant from crystal structures and homology models. VIPUR can be applied to mutations in any organism's proteome with improved generalized accuracy (AUROC .83) and interpretability (AUPR .87) compared to other methods. We demonstrate that VIPUR's predictions of deleteriousness match the biological phenotypes in ClinVar and provide a clear ranking of prediction confidence. We use VIPUR to interpret known mutations associated with inflammation and diabetes, demonstrating the structural diversity of disrupted functional sites and improved interpretation of mutations associated with human diseases. Lastly, we demonstrate VIPUR's ability to highlight candidate variants associated with human diseases by applying VIPUR to de novo variants associated with autism spectrum disorders. PMID:26926108

  14. Robust classification of protein variation using structural modelling and large-scale data integration

    PubMed Central

    Baugh, Evan H.; Simmons-Edler, Riley; Müller, Christian L.; Alford, Rebecca F.; Volfovsky, Natalia; Lash, Alex E.; Bonneau, Richard

    2016-01-01

    Existing methods for interpreting protein variation focus on annotating mutation pathogenicity rather than detailed interpretation of variant deleteriousness and frequently use only sequence-based or structure-based information. We present VIPUR, a computational framework that seamlessly integrates sequence analysis and structural modelling (using the Rosetta protein modelling suite) to identify and interpret deleterious protein variants. To train VIPUR, we collected 9477 protein variants with known effects on protein function from multiple organisms and curated structural models for each variant from crystal structures and homology models. VIPUR can be applied to mutations in any organism's proteome with improved generalized accuracy (AUROC .83) and interpretability (AUPR .87) compared to other methods. We demonstrate that VIPUR's predictions of deleteriousness match the biological phenotypes in ClinVar and provide a clear ranking of prediction confidence. We use VIPUR to interpret known mutations associated with inflammation and diabetes, demonstrating the structural diversity of disrupted functional sites and improved interpretation of mutations associated with human diseases. Lastly, we demonstrate VIPUR's ability to highlight candidate variants associated with human diseases by applying VIPUR to de novo variants associated with autism spectrum disorders. PMID:26926108

  15. Incremental learning of Bayesian sensorimotor models: from low-level behaviours to large-scale structure of the environment

    NASA Astrophysics Data System (ADS)

    Diard, Julien; Gilet, Estelle; Simonin, Éva; Bessière, Pierre

    2010-12-01

    This paper concerns the incremental learning of hierarchies of representations of space in artificial or natural cognitive systems. We propose a mathematical formalism for defining space representations (Bayesian Maps) and modelling their interaction in hierarchies of representations (sensorimotor interaction operator). We illustrate our formalism with a robotic experiment. Starting from a model based on the proximity to obstacles, we learn a new one related to the direction of the light source. It provides new behaviours, like phototaxis and photophobia. We then combine these two maps so as to identify parts of the environment where the way the two modalities interact is recognisable. This classification is a basis for learning a higher level of abstraction map that describes the large-scale structure of the environment. In the final model, the perception-action cycle is modelled by a hierarchy of sensorimotor models of increasing time and space scales, which provide navigation strategies of increasing complexities.

  16. Probabilistic analysis of large-scale composite structures using the IPACS code

    NASA Astrophysics Data System (ADS)

    Lemonds, Jeffrey; Kumar, Virendra

    1995-10-01

    An investigation was performed to ascertain the feasibility of using IPACS (Integrated Probabilistic Assessment of Composite Structures) for probabilistic analysis of a composite fan blade, the development of which is being pursued by various industries for the next generation of aircraft engines. A model representative of the class of fan blades used in the GE90 engine has been chosen as the structural component to be analyzed with IPACS. In this study, typical uncertainties are assumed in the level, and structural responses for ply stresses and frequencies are evaluated in the form of cumulative probability density functions. Because of the geometric complexity of the blade, the number of plies varies from several hundred at the root to about a hundred at the tip. This represents a extremely complex composites application for the IPACS code. A sensitivity study with respect to various random variables is also performed.

  17. Probabilistic Analysis of Large-Scale Composite Structures Using the IPACS Code

    NASA Technical Reports Server (NTRS)

    Lemonds, Jeffrey; Kumar, Virendra

    1995-01-01

    An investigation was performed to ascertain the feasibility of using IPACS (Integrated Probabilistic Assessment of Composite Structures) for probabilistic analysis of a composite fan blade, the development of which is being pursued by various industries for the next generation of aircraft engines. A model representative of the class of fan blades used in the GE90 engine has been chosen as the structural component to be analyzed with IPACS. In this study, typical uncertainties are assumed in the level, and structural responses for ply stresses and frequencies are evaluated in the form of cumulative probability density functions. Because of the geometric complexity of the blade, the number of plies varies from several hundred at the root to about a hundred at the tip. This represents a extremely complex composites application for the IPACS code. A sensitivity study with respect to various random variables is also performed.

  18. Lensing corrections to the Eg(z) statistics from large scale structure

    NASA Astrophysics Data System (ADS)

    Moradinezhad Dizgah, Azadeh; Durrer, Ruth

    2016-09-01

    We study the impact of the often neglected lensing contribution to galaxy number counts on the Eg statistics which is used to constrain deviations from GR. This contribution affects both the galaxy-galaxy and the convergence-galaxy spectra, while it is larger for the latter. At higher redshifts probed by upcoming surveys, for instance at z = 1.5, neglecting this term induces an error of (25-40)% in the spectra and therefore on the Eg statistics which is constructed from the combination of the two. Moreover, including it, renders the Eg statistics scale and bias-dependent and hence puts into question its very objective.

  19. Cosmic microwave background and large-scale structure constraints on a simple quintessential inflation model

    SciTech Connect

    Rosenfeld, Rogerio; Frieman, Joshua A.; /Fermilab /Chicago U., Astron. Astrophys. Ctr.

    2006-11-01

    We derive constraints on a simple quintessential inflation model, based on a spontaneously broken {Phi}{sup 4} theory, imposed by the Wilkinson Microwave Anisotropy Probe three-year data (WMAP3) and by galaxy clustering results from the Sloan Digital Sky Survey (SDSS). We find that the scale of symmetry breaking must be larger than about 3 Planck masses in order for inflation to generate acceptable values of the scalar spectral index and of the tensor-to-scalar ratio. We also show that the resulting quintessence equation-of-state can evolve rapidly at recent times and hence can potentially be distinguished from a simple cosmological constant in this parameter regime.

  20. Large-scale production and protein engineering of G protein-coupled receptors for structural studies

    PubMed Central

    Milić, Dalibor; Veprintsev, Dmitry B.

    2015-01-01

    Structural studies of G protein-coupled receptors (GPCRs) gave insights into molecular mechanisms of their action and contributed significantly to molecular pharmacology. This is primarily due to technical advances in protein engineering, production and crystallization of these important receptor targets. On the other hand, NMR spectroscopy of GPCRs, which can provide information about their dynamics, still remains challenging due to difficulties in preparation of isotopically labeled receptors and their low long-term stabilities. In this review, we discuss methods used for expression and purification of GPCRs for crystallographic and NMR studies. We also summarize protein engineering methods that played a crucial role in obtaining GPCR crystal structures. PMID:25873898

  1. Characterization of large-scale structures in a forced ducted flow with dump

    NASA Astrophysics Data System (ADS)

    Schadow, K. C.; Wilson, K. J.; Gutmark, E.

    1985-01-01

    A forced, subsonic ducted flow with dump was studied using hot-wire anemometry. Forcing to the flow was applied by exciting the duct resonant acoustics. Flow structures (vortices) with high azimuthal coherence and high spatial and temporal periodicity were generated in the shear flow at the dump when the forcing frequency matched the first subharmonic of the initial vortex shedding frequency or the preferred mode frequency. By forcing the flow at the preferred mode frequency, mixing was enhanced in the shear-flow and pipe-flow regimes. A visual description of the coherent structures was obtained in water flow tests.

  2. Characterization of large-scale structures in a forced ducted flow with dump

    NASA Astrophysics Data System (ADS)

    Schadow, K. C.; Wilson, K. J.; Gutmark, E.

    1987-09-01

    A forced, subsonic ducted airflow with a dump was studied using hot-wire anemometry. The flow was forced by exciting the duct resonant acoustics. Flow structures (vortices) with high azimuthal coherence and high spatial and temporal periodicity were generated in the shear flow at the dump when the forcing frequency matched the first subharmonic of the initial vortex shedding frequency or the preferred mode frequency. By forcing the flow at the preferred mode frequency, mixing was enhanced in the shear and pipe flow regimes. A visual description of the coherent structures was obtained in water flow tests.

  3. Large-scale production and protein engineering of G protein-coupled receptors for structural studies.

    PubMed

    Milić, Dalibor; Veprintsev, Dmitry B

    2015-01-01

    Structural studies of G protein-coupled receptors (GPCRs) gave insights into molecular mechanisms of their action and contributed significantly to molecular pharmacology. This is primarily due to technical advances in protein engineering, production and crystallization of these important receptor targets. On the other hand, NMR spectroscopy of GPCRs, which can provide information about their dynamics, still remains challenging due to difficulties in preparation of isotopically labeled receptors and their low long-term stabilities. In this review, we discuss methods used for expression and purification of GPCRs for crystallographic and NMR studies. We also summarize protein engineering methods that played a crucial role in obtaining GPCR crystal structures.

  4. Galactic angular momenta and angular momentum couplings in the large-scale structure

    NASA Astrophysics Data System (ADS)

    Schäfer, Björn Malte; Merkel, Philipp M.

    2012-04-01

    In this paper, we revisit the acquisition of angular momentum of galaxies by tidal shearing and compute the angular momentum variance ? as well as the angular momentum correlation function CL(r), using tidal torquing in the Zel'dovich approximation as the model for angular momentum build-up. Under the assumption that haloes form at peaks in the density field we determine the protohalo's inertia from the peak shape and embed it in a tidal field. Inertia and shear are drawn from a random process and we compute the angular momentum variance and correlation function by sampling from a Gaussian distribution which shows the correct covariances between all relevant quantities. We describe the way in which the correlations in angular momentum result from an interplay of long-ranged correlations in the tidal shear and short-ranged correlations in the inertia field. Our description takes care of the relative orientation of the eigensystems of these two symmetric tensors. We propose a new form of the angular momentum correlation function which is able to distinguish between parallel and antiparallel alignment of angular momentum vectors, and comment on implications of intrinsic alignments for weak lensing measurements. We confirm the scaling L/M ∝ M2/3 and find the angular momentum distribution of Milky Way sized haloes to be correlated on scales of ˜1 Mpc h-1. The correlation function can be well fitted by an empirical relation of the form CL(r) ∝ exp(-[r/r0]β).

  5. Parallel-vector solution of large-scale structural analysis problems on supercomputers

    NASA Technical Reports Server (NTRS)

    Storaasli, Olaf O.; Nguyen, Duc T.; Agarwal, Tarun K.

    1989-01-01

    A direct linear equation solution method based on the Choleski factorization procedure is presented which exploits both parallel and vector features of supercomputers. The new equation solver is described, and its performance is evaluated by solving structural analysis problems on three high-performance computers. The method has been implemented using Force, a generic parallel FORTRAN language.

  6. Characterizing the nonlinear growth of large-scale structure in the Universe

    PubMed

    Coles; Chiang

    2000-07-27

    The local Universe displays a rich hierarchical pattern of galaxy clusters and superclusters. The early Universe, however, was almost smooth, with only slight 'ripples' as seen in the cosmic microwave background radiation. Models of the evolution of cosmic structure link these observations through the effect of gravity, because the small initially overdense fluctuations are predicted to attract additional mass as the Universe expands. During the early stages of this expansion, the ripples evolve independently, like linear waves on the surface of deep water. As the structures grow in mass, they interact with each other in nonlinear ways, more like waves breaking in shallow water. We have recently shown how cosmic structure can be characterized by phase correlations associated with these nonlinear interactions, but it was not clear how to use that information to obtain quantitative insights into the growth of structures. Here we report a method of revealing phase information, and show quantitatively how this relates to the formation of filaments, sheets and clusters of galaxies by nonlinear collapse. We develop a statistical method based on information entropy to separate linear from nonlinear effects, and thereby are able to disentangle those aspects of galaxy clustering that arise from initial conditions (the ripples) from the subsequent dynamical evolution.

  7. Chebyshev polynomial filtered subspace iteration in the discontinuous Galerkin method for large-scale electronic structure calculations

    NASA Astrophysics Data System (ADS)

    Banerjee, Amartya S.; Lin, Lin; Hu, Wei; Yang, Chao; Pask, John E.

    2016-10-01

    The Discontinuous Galerkin (DG) electronic structure method employs an adaptive local basis (ALB) set to solve the Kohn-Sham equations of density functional theory in a discontinuous Galerkin framework. The adaptive local basis is generated on-the-fly to capture the local material physics and can systematically attain chemical accuracy with only a few tens of degrees of freedom per atom. A central issue for large-scale calculations, however, is the computation of the electron density (and subsequently, ground state properties) from the discretized Hamiltonian in an efficient and scalable manner. We show in this work how Chebyshev polynomial filtered subspace iteration (CheFSI) can be used to address this issue and push the envelope in large-scale materials' simulations in a discontinuous Galerkin framework. We describe how the subspace filtering steps can be performed in an efficient and scalable manner using a two-dimensional parallelization scheme, thanks to the orthogonality of the DG basis set and block-sparse structure of the DG Hamiltonian matrix. The on-the-fly nature of the ALB functions requires additional care in carrying out the subspace iterations. We demonstrate the parallel scalability of the DG-CheFSI approach in calculations of large-scale two-dimensional graphene sheets and bulk three-dimensional lithium-ion electrolyte systems. Employing 55 296 computational cores, the time per self-consistent field iteration for a sample of the bulk 3D electrolyte containing 8586 atoms is 90 s, and the time for a graphene sheet containing 11 520 atoms is 75 s.

  8. A topological analysis of large-scale structure, studied using the CMASS sample of SDSS-III

    SciTech Connect

    Parihar, Prachi; Gott, J. Richard III; Vogeley, Michael S.; Choi, Yun-Young; Kim, Juhan; Kim, Sungsoo S.; Speare, Robert; Brownstein, Joel R.; Brinkmann, J. E-mail: yy.choi@khu.ac.kr

    2014-12-01

    We study the three-dimensional genus topology of large-scale structure using the northern region of the CMASS Data Release 10 (DR10) sample of the SDSS-III Baryon Oscillation Spectroscopic Survey. We select galaxies with redshift 0.452 < z < 0.625 and with a stellar mass M {sub stellar} > 10{sup 11.56} M {sub ☉}. We study the topology at two smoothing lengths: R {sub G} = 21 h {sup –1} Mpc and R {sub G} = 34 h {sup –1} Mpc. The genus topology studied at the R {sub G} = 21 h {sup –1} Mpc scale results in the highest genus amplitude observed to date. The CMASS sample yields a genus curve that is characteristic of one produced by Gaussian random phase initial conditions. The data thus support the standard model of inflation where random quantum fluctuations in the early universe produced Gaussian random phase initial conditions. Modest deviations in the observed genus from random phase are as expected from shot noise effects and the nonlinear evolution of structure. We suggest the use of a fitting formula motivated by perturbation theory to characterize the shift and asymmetries in the observed genus curve with a single parameter. We construct 54 mock SDSS CMASS surveys along the past light cone from the Horizon Run 3 (HR3) N-body simulations, where gravitationally bound dark matter subhalos are identified as the sites of galaxy formation. We study the genus topology of the HR3 mock surveys with the same geometry and sampling density as the observational sample and find the observed genus topology to be consistent with ΛCDM as simulated by the HR3 mock samples. We conclude that the topology of the large-scale structure in the SDSS CMASS sample is consistent with cosmological models having primordial Gaussian density fluctuations growing in accordance with general relativity to form galaxies in massive dark matter halos.

  9. A Topological Analysis of Large-Scale Structure, Studied Using the CMASS Sample of SDSS-III

    NASA Astrophysics Data System (ADS)

    Parihar, Prachi; Vogeley, Michael S.; Gott, J. Richard, III; Choi, Yun-Young; Kim, Juhan; Kim, Sungsoo S.; Speare, Robert; Brownstein, Joel R.; Brinkmann, J.

    2014-12-01

    We study the three-dimensional genus topology of large-scale structure using the northern region of the CMASS Data Release 10 (DR10) sample of the SDSS-III Baryon Oscillation Spectroscopic Survey. We select galaxies with redshift 0.452 < z < 0.625 and with a stellar mass M stellar > 1011.56 M ⊙. We study the topology at two smoothing lengths: R G = 21 h -1 Mpc and R G = 34 h -1 Mpc. The genus topology studied at the R G = 21 h -1 Mpc scale results in the highest genus amplitude observed to date. The CMASS sample yields a genus curve that is characteristic of one produced by Gaussian random phase initial conditions. The data thus support the standard model of inflation where random quantum fluctuations in the early universe produced Gaussian random phase initial conditions. Modest deviations in the observed genus from random phase are as expected from shot noise effects and the nonlinear evolution of structure. We suggest the use of a fitting formula motivated by perturbation theory to characterize the shift and asymmetries in the observed genus curve with a single parameter. We construct 54 mock SDSS CMASS surveys along the past light cone from the Horizon Run 3 (HR3) N-body simulations, where gravitationally bound dark matter subhalos are identified as the sites of galaxy formation. We study the genus topology of the HR3 mock surveys with the same geometry and sampling density as the observational sample and find the observed genus topology to be consistent with ΛCDM as simulated by the HR3 mock samples. We conclude that the topology of the large-scale structure in the SDSS CMASS sample is consistent with cosmological models having primordial Gaussian density fluctuations growing in accordance with general relativity to form galaxies in massive dark matter halos.

  10. Large-scale oscillation of structure-related DNA sequence features in human chromosome 21

    NASA Astrophysics Data System (ADS)

    Li, Wentian; Miramontes, Pedro

    2006-08-01

    Human chromosome 21 is the only chromosome in the human genome that exhibits oscillation of the (G+C) content of a cycle length of hundreds kilobases (kb) ( 500kb near the right telomere). We aim at establishing the existence of a similar periodicity in structure-related sequence features in order to relate this (G+C)% oscillation to other biological phenomena. The following quantities are shown to oscillate with the same 500kb periodicity in human chromosome 21: binding energy calculated by two sets of dinucleotide-based thermodynamic parameters, AA/TT and AAA/TTT bi- and tri-nucleotide density, 5'-TA-3' dinucleotide density, and signal for 10- or 11-base periodicity of AA/TT or AAA/TTT. These intrinsic quantities are related to structural features of the double helix of DNA molecules, such as base-pair binding, untwisting or unwinding, stiffness, and a putative tendency for nucleosome formation.

  11. Visualizing a Large-Scale Structure of Production Network by N-Body Simulation

    NASA Astrophysics Data System (ADS)

    Fujiwara, Y.

    Our recent study of a nation-wide production network uncovered acommunity structure, namely how firms are connected by supplier-customer links into tightly-knit groups with high density in intra-groups and with lower connectivity in inter-groups. Here we propose a method to visualize the community structure by a graph layout based on a physical analogy. The layout can be calculated in a practical computation-time and is possible to be accelerated by a special-purpose device of GRAPE (gravity pipeline) developed for astrophysical N-body simulation. We show that the method successfully identifies the communities in a hierarchical way by applying it to the manufacturing sector comprising tenth million nodes and a half million edges. In addition, we discuss several limitations of this method, and propose a possible way to avoid all those problems.

  12. Large-scale structure of brown rat (Rattus norvegicus) populations in England: effects on rodenticide resistance

    PubMed Central

    Haniza, Mohd Z.H.; Adams, Sally; Jones, Eleanor P.; MacNicoll, Alan; Mallon, Eamonn B.; Smith, Robert H.

    2015-01-01

    The brown rat (Rattus norvegicus) is a relatively recent (<300 years) addition to the British fauna, but by association with negative impacts on public health, animal health and agriculture, it is regarded as one of the most important vertebrate pest species. Anticoagulant rodenticides were introduced for brown rat control in the 1950s and are widely used for rat control in the UK, but long-standing resistance has been linked to control failures in some regions. One thus far ignored aspect of resistance biology is the population structure of the brown rat. This paper investigates the role population structure has on the development of anticoagulant resistance. Using mitochondrial and microsatellite DNA, we examined 186 individuals (from 15 counties in England and one location in Wales near the Wales–England border) to investigate the population structure of rural brown rat populations. We also examined individual rats for variations of the VKORC1 gene previously associated with resistance to anticoagulant rodenticides. We show that the populations were structured to some degree, but that this was only apparent in the microsatellite data and not the mtDNA data. We discuss various reasons why this is the case. We show that the population as a whole appears not to be at equilibrium. The relative lack of diversity in the mtDNA sequences examined can be explained by founder effects and a subsequent spatial expansion of a species introduced to the UK relatively recently. We found there was a geographical distribution of resistance mutations, and relatively low rate of gene flow between populations, which has implications for the development and management of anticoagulant resistance. PMID:26664802

  13. Large-scale flows and coherent structure phenomena in flute turbulence

    SciTech Connect

    Sandberg, I.; Andrushchenko, Zh.N.; Pavlenko, V.P.

    2005-04-15

    The properties of zonal and streamer flows in the flute mode turbulence are investigated. The stability criteria and the frequency of these flows are determined in terms of the spectra of turbulent fluctuations. Furthermore, it is shown that zonal flows can undergo a further nonlinear evolution leading to the formation of long-lived coherent structures which consist of self-bound wave packets supporting stationary shear layers, and thus can be characterized as regions with a reduced level of anomalous transport.

  14. Computational large-scale mapping of protein-protein interactions using structural complexes.

    PubMed

    Shoemaker, Benjamin; Wuchty, Stefan; Panchenko, Anna R

    2013-01-01

    Although the identification of protein interactions by high-throughput methods progresses at a fast pace, "interactome" datasets still suffer from high rates of false positives and low coverage. To map the interactome of any organism, this unit presents a computational framework to predict protein-protein or gene-gene interactions utilizing experimentally determined evidence of structural complexes, atomic details of binding interfaces and evolutionary conservation.

  15. Large-scale brain network abnormalities in Huntington's disease revealed by structural covariance.

    PubMed

    Minkova, Lora; Eickhoff, Simon B; Abdulkadir, Ahmed; Kaller, Christoph P; Peter, Jessica; Scheller, Elisa; Lahr, Jacob; Roos, Raymund A; Durr, Alexandra; Leavitt, Blair R; Tabrizi, Sarah J; Klöppel, Stefan

    2016-01-01

    Huntington's disease (HD) is a progressive neurodegenerative disorder that can be diagnosed with certainty decades before symptom onset. Studies using structural MRI have identified grey matter (GM) loss predominantly in the striatum, but also involving various cortical areas. So far, voxel-based morphometric studies have examined each brain region in isolation and are thus unable to assess the changes in the interrelation of brain regions. Here, we examined the structural covariance in GM volumes in pre-specified motor, working memory, cognitive flexibility, and social-affective networks in 99 patients with manifest HD (mHD), 106 presymptomatic gene mutation carriers (pre-HD), and 108 healthy controls (HC). After correction for global differences in brain volume, we found that increased GM volume in one region was associated with increased GM volume in another. When statistically comparing the groups, no differences between HC and pre-HD were observed, but increased positive correlations were evident for mHD, relative to pre-HD and HC. These findings could be explained by a HD-related neuronal loss heterogeneously affecting the examined network at the pre-HD stage, which starts to dominate structural covariance globally at the manifest stage. Follow-up analyses identified structural connections between frontoparietal motor regions to be linearly modified by disease burden score (DBS). Moderator effects of disease load burden became significant at a DBS level typically associated with the onset of unequivocal HD motor signs. Together with existing findings from functional connectivity analyses, our data indicates a critical role of these frontoparietal regions for the onset of HD motor signs.

  16. Quasi-linear regime of gravitational instability as a clue to understanding the large-scale structure in the Universe

    NASA Technical Reports Server (NTRS)

    Shandarin, Sergei F.

    1992-01-01

    In the late seventies, an image of the large-scale structure in the Universe began to emerge as a result of the accumulation of the galaxy redshifts. Most of the galaxies are found to concentrate in large filaments and perhaps sheets leaving most of the volume empty. Similar structures were predicted theoretically in the frame of the adiabatic theory of galaxy formation (Zeldovich) and later in the hot dark matter cosmology. However, both scenarios have been ruled out by the observations. With these scenarios the dynamical part of the scenario was also erroneously rejected by many as well. In this talk, I derive the Zeldovich approximation from the exact dynamic equations and show that it is always better than the standard linear approximation. The advantage of the Zeldovich approximation is the greatest in the quasi-linear regime when delta(sub rms) is less than 1 (delta identical to delta(rho)/rho), but the displacement of the matter is essential. The range of scales in the quasi-linear regime depends upon the slope of the initial spectrum and increases with decreasing n, where n is the exponent, if the initial spectrum is approximated by a simple power law P(k) varies as k(exp n).

  17. Compact groups in theory and practice - IV. The connection to large-scale structure

    NASA Astrophysics Data System (ADS)

    Mendel, J. Trevor; Ellison, Sara L.; Simard, Luc; Patton, David R.; McConnachie, Alan W.

    2011-12-01

    We investigate the properties of photometrically selected compact groups (CGs) in the Sloan Digital Sky Survey. In this paper, the fourth in a series, we focus on understanding the characteristics of our observed CG sample with particular attention paid to quantifying and removing contamination from projected foreground or background galaxies. Based on a simple comparison of pairwise redshift likelihoods, we find that approximately half of CGs in the parent sample contain one or more projected (interloping) members; our final clean sample contains 4566 galaxies in 1086 CGs. We show that half of the remaining CGs are associated with rich groups (or clusters), i.e. they are embedded sub-structure. The other half have spatial distributions and number-density profiles consistent with the interpretation that they are either independently distributed structures within the field (i.e. they are isolated) or associated with relatively poor structures. Comparisons of late-type and red-sequence fractions in radial annuli show that galaxies around apparently isolated CGs resemble the field population by 300 to 500 kpc from the group centre. In contrast, the galaxy population surrounding embedded CGs appears to remain distinct from the field out beyond 1 to 2 Mpc, consistent with results for rich groups. We take this as additional evidence that the observed distinction between CGs, i.e. isolated versus embedded, is a separation between different host environments.

  18. Large-scale hydraulic structure of a seismogenic fault at 10 km depth (Gole Larghe Fault Zone, Italian Southern Alps)

    NASA Astrophysics Data System (ADS)

    Bistacchi, Andrea; Di Toro, Giulio; Smith, Steve; Mittempergher, Silvia; Garofalo, Paolo

    2014-05-01

    The definition of hydraulic properties of fault zones is a major issue in structural geology, seismology, and in several applications (hydrocarbons, hydrogeology, CO2 sequestration, etc.). The permeability of fault rocks can be measured in laboratory experiments, but its upscaling to large-scale structures is not straightforward. For instance, typical permeability of fine-grained fault rock samples is in the 10-18-10-20 m2 range, but, according to seismological estimates, the large-scale permeability of active fault zones can be as high as 10-10 m2. Solving this issue is difficult because in-situ measurements of large-scale permeability have been carried out just at relatively shallow depths - mainly in oil wells and exceptionally in active tectonic settings (e.g. SAFOD at 3 km), whilst deeper experiments have been performed only in the stable continental crust (e.g. KTB at 9 km). In this study, we apply discrete fracture-network (DFN) modelling techniques developed for shallow aquifers (mainly in nuclear waste storage projects like Yucca Mountain) and in the oil industry, in order to model the hydraulic structure of the Gole Larghe Fault Zone (GLFZ, Italian Southern Alps). This fault, now exposed in world-class glacier-polished outcrops, has been exhumed from ca. 8 km, where it was characterized by a well-documented seismic activity, but also by hydrous fluid flow evidenced by alteration halos and precipitation of hydrothermal minerals in veins and along cataclasites. The GLFZ does not show a classical seal structure that in other fault zones corresponds to a core zone characterized by fine-grained fault rocks. However, permeability is heterogeneous and the permeability tensor is strongly anisotropic due to fracture preferential orientation. We will show with numerical experiments that this hydraulic structure results in a channelized fluid flow (which is consistent with the observed hydrothermal alteration pattern). This results in a counterintuitive situation

  19. A Large-Scale Computational Analysis of Corneal Structural Response and Ectasia Risk in Myopic Laser Refractive Surgery

    PubMed Central

    Dupps, William Joseph; Seven, Ibrahim

    2016-01-01

    Purpose: To investigate biomechanical strain as a structural susceptibility metric for corneal ectasia in a large-scale computational trial. Methods: A finite element modeling study was performed using retrospective Scheimpflug tomography data from 40 eyes of 40 patients. LASIK and PRK were simulated with varied myopic ablation profiles and flap thickness parameters across eyes from LASIK candidates, patients disqualified for LASIK, subjects with atypical topography, and keratoconus subjects in 280 simulations. Finite element analysis output was then interrogated to extract several risk and outcome variables. We tested the hypothesis that strain is greater in known at-risk eyes than in normal eyes, evaluated the ability of a candidate strain variable to differentiate eyes that were empirically disqualified as LASIK candidates, and compared the performance of common risk variables as predictors of this novel susceptibility marker across multiple virtual subjects and surgeries. Results: A candidate susceptibility metric that expressed mean strains across the anterior residual stromal bed was significantly higher in eyes with confirmed ectatic predisposition in preoperative and all postoperative cases (P≤.003). The strain metric was effective at differentiating normal and at-risk eyes (area under receiver operating characteristic curve ≥ 0.83, P≤.002), was highly correlated to thickness-based risk metrics (as high as R2 = 95%, P<.001 for the percent of stromal tissue altered (PSTA)), and predicted large portions of the variance in predicted refractive response to surgery (R2 = 57%, P<.001). Conclusions: This study represents the first large-scale 3-dimensional structural analysis of ectasia risk and provides a novel biomechanical construct for expressing structural risk in refractive surgery. Mechanical strain is an effective marker of known ectasia risk and correlates to predicted refractive error after myopic photoablative surgery.

  20. Generation of Large-Scale Zonal Structures by Drift Flute Waves in High-Beta HED Plasmas

    NASA Astrophysics Data System (ADS)

    Yasin, Essam; Sotnikov, Vladmir; Kindel, Joseph; Onishchenko, O. G.; Leboeuf, J. N.

    2009-05-01

    Our aim is to develop a more general analysis of nonlinear dynamics of drift-flute waves, applicable to arbitrary plasma beta and arbitrary spatial scales in comparison with the ion Larmor radius. This study is of interest for fundamental plasma theory as well as for the interpretation of Z-pinch and laboratory astrophysics experiments. Description of low-frequency waves and in particular drift flute waves in a high beta plasma, generally speaking, requires a kinetic approach, based on the Vlasov-Maxwell set of equations. In the present work we show that the alternative two-fluid description can adequately describe the ion perturbations with arbitrary ratio of the characteristic spatial scales to the ion Larmor radius in so-called Pade approximation. For this purpose reduced two-fluid hydrodynamic equations which describe nonlinear dynamics of the flute waves with arbitrary spatial scales and arbitrary plasma beta are derived. The linear dispersion relation of the flute waves and the Rayleigh-Taylor instability are analyzed. A general nonlinear dispersion relation which describes generation of large-scale zonal structures by the flute waves is presented and analyzed.

  1. Satellite traces: An ionogram signature for large-scale wave structure and a precursor for equatorial spread F

    NASA Astrophysics Data System (ADS)

    Tsunoda, Roland T.

    2008-10-01

    Although the source that controls day-to-day variability in the occurrence of equatorial plasma structure (i.e., equatorial spread F, or ESF) remains to be identified, progress is being made. There is evidence that the appearance of large-scale wave structure (LSWS) in the bottomside F layer, around the time of its post-sunset rise (PSSR), is a more-direct precursor of ESF than the PSSR itself. The bulk of the evidence, however, is in the form of ``satellite'' F traces in ionograms, which may be viewed as less than convincing, because these signatures have not been shown to be causally related to LSWS. In this paper, incoherent-scatter radar and ionosonde data, both collected on 24 July 1979 from the Kwajalein atoll, Marshall Islands, are used to show that this is indeed the case.

  2. The sponge-like topology of large-scale structure in the universe

    NASA Technical Reports Server (NTRS)

    Gott, J. R., III; Dickinson, M.; Melott, A. L.

    1986-01-01

    The relative connectedness of the high- and low-density regions in the universe is studied using a median density contour which divides space into two equal volumes. The CfA data are found to show a sponge-like topology where the highand low-density regions are both interlocking and equivalent. The boundary surface between the two regions has a general negative curvature, and is characterized by a large number of holes. In the initial conditions the connectedness of the two regions must be identical because a change of sign in the random quantum fluctuations would reverse their roles. It is noted that in the cold dark matter and neutrino scenarios the hole sizes are typically of the order of the smoothing diameter or the damping length, whichever is larger. The sponge-like topology is consistent with the universe having a frothy appearance without being divided neatly into cells. A computer algorithm for measuring topology is discussed.

  3. The evolution of large-scale structure in a universe dominated by cold dark matter

    NASA Technical Reports Server (NTRS)

    Davis, M.; Efstathiou, G.; Frenk, C. S.; White, S. D. M.

    1985-01-01

    The results of numerical simulations of nonlinear gravitational clustering in universes dominated by weakly interacting, 'cold' dark matter are presented. The numerical methods used and the way in which initial conditions were generated are described, and the simulations performed are catalogued. The evolution of the fundamental statistical properties of the models is described and their comparability with observation is discussed. Graphical comparisons of these open models with the observed galaxy distribution in a large redshift survey are made. It is concluded that a model with a cosmological density parameter omega equal to one is quite unacceptable if galaxies trace the mass distribution, and that models with omega of roughly two, while better, still do not provide a fully acceptable match with observation. Finally, a situation in which galaxy formation is suppressed except in sufficiently dense regions is modelled which leads to models which can agree with observation quite well even for omega equal to one.

  4. Topological biosignatures: large-scale structure of chemical networks from biology and astrochemistry.

    PubMed

    Jolley, Craig; Douglas, Trevor

    2012-01-01

    The chemical basis of life involves more than simply the presence of biological molecules; biochemical systems embody a complex network of reactions with characteristic topological features. At the same time, chemical complexity is also present in nonbiological contexts, inviting us to clarify the relationship between chemistry and life through comparative studies. This study examines chemical networks from biology (the metabolism of E. coli) and astronomy (gas-phase reactions in dark molecular clouds) to establish common topological features that may be generic for any complex chemical system, as well as clear differences that may be topological signatures of life. The biological and astrochemical networks exhibit different scaling behaviors, and the network motifs found in the two systems show similarities as well as significant differences. The PageRank algorithm was used to quantify the degree to which individual species act primarily as products or reactants; in the metabolic network, these two roles are nearly identical for most species, whereas the astrochemical network shows a clearer partitioning into reactants and products.

  5. Brans-Dicke Theory with Λ>0: Black Holes and Large Scale Structures.

    PubMed

    Bhattacharya, Sourav; Dialektopoulos, Konstantinos F; Romano, Antonio Enea; Tomaras, Theodore N

    2015-10-30

    A step-by-step approach is followed to study cosmic structures in the context of Brans-Dicke theory with positive cosmological constant Λ and parameter ω. First, it is shown that regular stationary black-hole solutions not only have constant Brans-Dicke field ϕ, but can exist only for ω=∞, which forces the theory to coincide with the general relativity. Generalizations of the theory in order to evade this black-hole no-hair theorem are presented. It is also shown that in the absence of a stationary cosmological event horizon in the asymptotic region, a stationary black-hole horizon can support a nontrivial Brans-Dicke hair. Even more importantly, it is shown next that the presence of a stationary cosmological event horizon rules out any regular stationary solution, appropriate for the description of a star. Thus, to describe a star one has to assume that there is no such stationary horizon in the faraway asymptotic region. Under this implicit assumption generic spherical cosmic structures are studied perturbatively and it is shown that only for ω>0 or ω≲-5 their predicted maximum sizes are consistent with observations. We also point out how, many of the conclusions of this work differ qualitatively from the Λ=0 spacetimes.

  6. Brans-Dicke Theory with Λ>0: Black Holes and Large Scale Structures.

    PubMed

    Bhattacharya, Sourav; Dialektopoulos, Konstantinos F; Romano, Antonio Enea; Tomaras, Theodore N

    2015-10-30

    A step-by-step approach is followed to study cosmic structures in the context of Brans-Dicke theory with positive cosmological constant Λ and parameter ω. First, it is shown that regular stationary black-hole solutions not only have constant Brans-Dicke field ϕ, but can exist only for ω=∞, which forces the theory to coincide with the general relativity. Generalizations of the theory in order to evade this black-hole no-hair theorem are presented. It is also shown that in the absence of a stationary cosmological event horizon in the asymptotic region, a stationary black-hole horizon can support a nontrivial Brans-Dicke hair. Even more importantly, it is shown next that the presence of a stationary cosmological event horizon rules out any regular stationary solution, appropriate for the description of a star. Thus, to describe a star one has to assume that there is no such stationary horizon in the faraway asymptotic region. Under this implicit assumption generic spherical cosmic structures are studied perturbatively and it is shown that only for ω>0 or ω≲-5 their predicted maximum sizes are consistent with observations. We also point out how, many of the conclusions of this work differ qualitatively from the Λ=0 spacetimes. PMID:26565454

  7. Large-scale variation in lithospheric structure along and across the Kenya rift

    USGS Publications Warehouse

    Prodehl, C.; Mechie, J.; Kaminski, W.; Fuchs, K.; Grosse, C.; Hoffmann, H.; Stangl, R.; Stellrecht, R.; Khan, M.A.; Maguire, Peter K.H.; Kirk, W.; Keller, Gordon R.; Githui, A.; Baker, M.; Mooney, W.; Criley, E.; Luetgert, J.; Jacob, B.; Thybo, H.; Demartin, M.; Scarascia, S.; Hirn, A.; Bowman, J.R.; Nyambok, I.; Gaciri, S.; Patel, J.; Dindi, E.; Griffiths, D.H.; King, R.F.; Mussett, A.E.; Braile, L.W.; Thompson, G.; Olsen, K.; Harder, S.; Vees, R.; Gajewski, D.; Schulte, A.; Obel, J.; Mwango, F.; Mukinya, J.; Riaroh, D.

    1991-01-01

    The Kenya rift is one of the classic examples of a continental rift zone: models for its evolution range from extension of the lithosphere by pure shear1, through extension by simple shear2, to diapiric upwelling of an asthenolith3. Following a pilot study in 19854, the present work involved the shooting of three seismic refraction and wide-angle reflection profiles along the axis, across the margins, and on the northeastern flank of the rift (Fig. 1). These lines were intended to reconcile the different crustal thickness estimates for the northern and southern parts of the rift4-6 and to reveal the structure across the rift, including that beneath the flanks. The data, presented here, reveal significant lateral variations in structure both along and across the rift. The crust thins along the rift axis from 35 km in the south to 20 km in the north; there are abrupt changes in Mono depth and uppermost-mantle seismic velocity across the rift margins, and crustal thickening across the boundary between the Archaean craton and PanAfrican orogenic belt immediately west of the rift. These results suggest that thickened crust may have controlled the rift's location, that there is a decrease in extension from north to south, and that the upper mantle immediately beneath the rift may contain reservoirs of magma generated at greater depth.

  8. Overview of PSB track on gene structure identification in large-scale genomic sequence

    SciTech Connect

    Uberbacher, E.C.; Xu, Y.

    1998-12-31

    The recent funding of more than a dozen major genome centers to begin community-wide high-throughput sequencing of the human genome has created a significant new challenge for the computational analysis of DNA sequence and the prediction of gene structure and function. It has been estimated that on average from 1996 to 2003, approximately 2 million bases of newly finished DNA sequence will be produced every day and be made available on the Internet and in central databases. The finished (fully assembled) sequence generated each day will represent approximately 75 new genes (and their respective proteins), and many times this number will be represented in partially completed sequences. The information contained in these is of immeasurable value to medical research, biotechnology, the pharmaceutical industry and researchers in a host of fields ranging from microorganism metabolism, to structural biology, to bioremediation. Sequencing of microorganisms and other model organisms is also ramping up at a very rapid rate. The genomes for yeast and several microorganisms such as H. influenza have recently been fully sequenced, although the significance of many genes remains to be determined.

  9. A Structural Evaluation of a Large-Scale Quasi-Experimental Microfinance Initiative

    PubMed Central

    Kaboski, Joseph P.; Townsend, Robert M.

    2010-01-01

    This paper uses a structural model to understand, predict, and evaluate the impact of an exogenous microcredit intervention program, the Thai Million Baht Village Fund program. We model household decisions in the face of borrowing constraints, income uncertainty, and high-yield indivisible investment opportunities. After estimation of parameters using pre-program data, we evaluate the model’s ability to predict and interpret the impact of the village fund intervention. Simulations from the model mirror the data in yielding a greater increase in consumption than credit, which is interpreted as evidence of credit constraints. A cost-benefit analysis using the model indicates that some households value the program much more than its per household cost, but overall the program costs 20 percent more than the sum of these benefits. PMID:22162594

  10. Large scale X-ray and radio structures associated with compact extragalactic sources

    NASA Technical Reports Server (NTRS)

    Biermann, P.; Pauliny-Toth, I. I. K.; Witzel, A.; Fricke, K.; Johnston, K. J.; Kuehr, H.; Strittmatter, P. A.; Urbanik, M.

    1982-01-01

    Knots of X-ray emission have been detected within 20 arcmin of five compact sources initially selected from the MPIfR north polar 5 GHz survey. Two of the knots have also been detected at centimeter wavelengths and probably have nonthermal spectra. They appear to be associated with the compact sources since the probability of serendipitous discovery at the observed flux levels is low. While the apparent association may be due to colocation of the sources in a distant supercluster, it is suggested on the basis of overall alignment, and possible correlations with structures in the respective central sources, that the association may be similar to that found in extended radio sources. The observed emission may thus be due to synchrotron or inverse Compton radiation, the energy being supplied by jets from the central source.

  11. APOGEE: The New View of the Milky Way -- Large Scale Galactic Structure

    NASA Astrophysics Data System (ADS)

    Bovy, Jo

    2016-06-01

    Observations of the structure and dynamics of different stellar populations in the Milky Way's disk provide a unique perspective on galactic growth, evolution, and dynamics over cosmic time. The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has over the past five years collected almost 1 million high-resolution (R~22,500), high quality (S/N > 100) spectra in the near-infrared H-band (1.51-1.68 μm) for about 250,000 stars covering all stellar populations of the Milky Way. I will take the audience on a tour of the exciting results from APOGEE and show how its novel, global view of the Milky Way is reshaping our understanding of how galactic disks form and evolve.

  12. Very Large Scale Optimization

    NASA Technical Reports Server (NTRS)

    Vanderplaats, Garrett; Townsend, James C. (Technical Monitor)

    2002-01-01

    The purpose of this research under the NASA Small Business Innovative Research program was to develop algorithms and associated software to solve very large nonlinear, constrained optimization tasks. Key issues included efficiency, reliability, memory, and gradient calculation requirements. This report describes the general optimization problem, ten candidate methods, and detailed evaluations of four candidates. The algorithm chosen for final development is a modern recreation of a 1960s external penalty function method that uses very limited computer memory and computational time. Although of lower efficiency, the new method can solve problems orders of magnitude larger than current methods. The resulting BIGDOT software has been demonstrated on problems with 50,000 variables and about 50,000 active constraints. For unconstrained optimization, it has solved a problem in excess of 135,000 variables. The method includes a technique for solving discrete variable problems that finds a "good" design, although a theoretical optimum cannot be guaranteed. It is very scalable in that the number of function and gradient evaluations does not change significantly with increased problem size. Test cases are provided to demonstrate the efficiency and reliability of the methods and software.

  13. Flow over and within large-scale porous topography: Impact of surface heterogeneity on turbulence structure

    NASA Astrophysics Data System (ADS)

    Hamed, Ali M.; Ranjan, Prateek; Sadowski, Matthew J.; Nepf, Heidi M.; Chamorro, Leonardo P.

    2015-11-01

    An experimental investigation of the flow within and above model canopies was carried out to determine the effect of canopy height heterogeneity on the structure and spatial distribution of the turbulence. Two 800 mm long models with 20% blockage were placed in a 2.5 m long refractive-index-matching channel. The first model (base case) is constituted of equal height (h) square bar elements arranged in a staggered configuration. The other model bars had two heights (h +1/3h and h-1/3h) alternated every two rows. Particle image velocimetry was used to map the flow field at three locations spanning the length of the canopy under three confinement ratios H/h =2, 3, and 4, where H is the free surface height. The experiments were performed at Reynolds number ReH = 6800 , 10200, and 13600. Refractive index matching renders the canopy invisible and grants full optical access allowing the flow field within the canopy to be measured by PIV. Turbulence statistics complemented with POD, quadrant analysis, and LES decomposition reveal the distinctive effect of the height heterogeneity on the shear layer that forms on top of the canopy, and on the free flow over the canopies.

  14. Neutrino Physics from the Cosmic Microwave Background and Large Scale Structure

    DOE PAGES

    Abazajian, K. N.; Arnold, K.; Austermann, J.; Benson, B. A.; Bischoff, C.; Bock, J.; Bond, J. R.; Borrill, J.; Calabrese, E.; Carlstrom, J. E.; et al

    2014-03-15

    This is a report on the status and prospects of the quantification of neutrino properties through the cosmological neutrino background for the Cosmic Frontier of the Division of Particles and Fields Community Summer Study long-term planning exercise. Experiments planned and underway are prepared to study the cosmological neutrino background in detail via its influence on distance-redshift relations and the growth of structure. The program for the next decade described in this document, including upcoming spectroscopic galaxy surveys eBOSS and DESI and a new Stage-IV CMB polarization experiment CMB-S4, will achieve σ (σmv) = 16 meV and σ (Neff)(Neff) = 0.020.more » Such a mass measurement will produce a high significance detection of non-zero σmνσmν, whose lower bound derived from atmospheric and solar neutrino oscillation data is about 58 meV. If neutrinos have a minimal normal mass hierarchy, this measurement will definitively rule out the inverted neutrino mass hierarchy, shedding light on one of the most puzzling aspects of the Standard Model of particle physics — the origin of mass. This precise a measurement of Neff will allow for high sensitivity to any light and dark degrees of freedom produced in the big bang and a precision test of the standard cosmological model prediction that Neff = 3.046.« less

  15. Neutrino physics from the cosmic microwave background and large scale structure

    SciTech Connect

    Abazajian, K. N.; Arnold, K.; Austermann, J. E.; Benson, B. A.; Bischoff, C.; Brock, J.; Bond, J. R.; Borrill, J.; Calabrese, E.; Carlstrom, J. E.; Chang, C. L.

    2015-03-15

    This is a report on the status and prospects of the quantification of neutrino properties through the cosmological neutrino background for the Cosmic Frontier of the Division of Particles and Fields Community Summer Study long-term planning exercise. Experiments planned and underway are prepared to study the cosmological neutrino background in detail via its influence on distance-redshift relations and the growth of structure. The program for the next decade described in this document, including upcoming spectroscopic galaxy surveys eBOSS and DESI and a new Stage-IV CMB polarization experiment CMB-S4, will achieve σ (σmν)(σmν) = 16 meV and σ (Neff)(Neff) = 0.020. Such a mass measurement will produce a high significance detection of non-zero σmνσmν, whose lower bound derived from atmospheric and solar neutrino oscillation data is about 58 meV. If neutrinos have a minimal normal mass hierarchy, this measurement will definitively rule out the inverted neutrino mass hierarchy, shedding light on one of the most puzzling aspects of the Standard Model of particle physics — the origin of mass. This precise a measurement of NeffNeff will allow for high sensitivity to any light and dark degrees of freedom produced in the big bang and a precision test of the standard cosmological model prediction that View the MathML sourceNeff=3.046.

  16. Study of the large-scale structure of the plasmasphere using extreme ultraviolet observations

    SciTech Connect

    Chakrabarti, S.

    1982-01-01

    Plasmaspheric ion distributions in the 500-30,000 km range have been indirectly measured by observing selected lines of solar Extreme Ultra Violet spectrum resonantly scattered by different ionic species. The observations were made with a broad-band photometer on the Apollo-Soyuz mission and an EUV spectrometer on board the STP78-1 satellite. A third experiment has been conducted recently from rocket-borne photometers. The data obtained from these experiments were compared against several theoretical models of ion distributions. The study shows that the ad-hoc models, which were sufficient to explain previous observations, were unable to explain the data obtained by the instruments which were more sensitive than the previous ones. A kinetic equilibrium model of ion distribution, which takes the effect of a non-homogeneous magnetic field into account, was found to explain the observations. The model uses a reference ionosphere and a thermal structure of the plasmasphere as the input parameters. The ion density at the reference ionosphere (500 km) used in this analysis was obtained from simultaneous measurements by a mass spectrometer on the Atmospheric Explorer satellite. Ion temperature at the reference altitude was obtained from near-simultaneous measurements by a retarding potential analyzer on the same satellite. This use of independent measurements to restrict the boundary values enhances the validity of the model.

  17. Neutrino Physics from the Cosmic Microwave Background and Large Scale Structure

    SciTech Connect

    Abazajian, K. N.; Arnold, K.; Austermann, J.; Benson, B. A.; Bischoff, C.; Bock, J.; Bond, J. R.; Borrill, J.; Calabrese, E.; Carlstrom, J. E.; Carvalho, C. S.; Chang, C. L.; Chiang, H. C.; Church, S.; Cooray, A.; Crawford, T. M.; Dawson, K. S.; Das, S.; Devlin, M. J.; Dobbs, M.; Dodelson, S.; Dore, O.; Dunkley, J.; Errard, J.; Fraisse, A.; Gallicchio, J.; Halverson, N. W.; Hanany, S.; Hildebrandt, S. R.; Hincks, A.; Hlozek, R.; Holder, G.; Holzapfel, W. L.; Honscheid, K.; Hu, W.; Hubmayr, J.; Irwin, K.; Jones, W. C.; Kamionkowski, M.; Keating, B.; Keisler, R.; Knox, L.; Komatsu, E.; Kovac, J.; Kuo, C. -L.; Lawrence, C.; Lee, A. T.; Leitch, E.; Linder, E.; Lubin, P.; McMahon, J.; Miller, A.; Newburgh, L.; Niemack, M. D.; Nguyen, H.; Nguyen, H. T.; Page, L.; Pryke, C.; Reichardt, C. L.; Ruhl, J. E.; Sehgal, N.; Seljak, U.; Sievers, J.; Silverstein, E.; Slosar, A.; Smith, K. M.; Spergel, D.; Staggs, S. T.; Stark, A.; Stompor, R.; Wang, G.; Watson, S.; Wollack, E. J.; W. Wu; Yoon, K. W.; Zahn, O.

    2014-03-15

    This is a report on the status and prospects of the quantification of neutrino properties through the cosmological neutrino background for the Cosmic Frontier of the Division of Particles and Fields Community Summer Study long-term planning exercise. Experiments planned and underway are prepared to study the cosmological neutrino background in detail via its influence on distance-redshift relations and the growth of structure. The program for the next decade described in this document, including upcoming spectroscopic galaxy surveys eBOSS and DESI and a new Stage-IV CMB polarization experiment CMB-S4, will achieve σ (σmv) = 16 meV and σ (Neff)(Neff) = 0.020. Such a mass measurement will produce a high significance detection of non-zero σmνσmν, whose lower bound derived from atmospheric and solar neutrino oscillation data is about 58 meV. If neutrinos have a minimal normal mass hierarchy, this measurement will definitively rule out the inverted neutrino mass hierarchy, shedding light on one of the most puzzling aspects of the Standard Model of particle physics — the origin of mass. This precise a measurement of Neff will allow for high sensitivity to any light and dark degrees of freedom produced in the big bang and a precision test of the standard cosmological model prediction that Neff = 3.046.

  18. A finite element beam-model for efficient simulation of large-scale porous structures.

    PubMed

    Stauber, Martin; Huber, Martin; Van Lenthe, G Harry; Boyd, Steven K; Müller, Ralph

    2004-02-01

    This paper presents a new method for the generation of a beam finite element (FE) model from a three-dimensional (3D) data set acquired by micro-computed tomography (micro-CT). This method differs from classical modeling of trabecular bone because it models a specific sample only and differs from conventional solid hexahedron element-based FE approaches in its computational efficiency. The stress-strain curve, characterizing global mechanical properties of a porous structure, could be well predicted (R(2)=0.92). Furthermore, validation of the method was achieved by comparing local displacements of element nodes with the displacements directly measured by time-lapsed imaging methods of failure, and these measures were in good agreement. The presented model is a first step in modeling specific samples for efficient strength analysis by FE modeling. We believe that with upcoming high-resolution in-vivo imaging methods, this approach could lead to a novel and accurate tool in the risk assessment for osteoporotic fractures.

  19. Small-scale sedimentary structures and their implications in recognizing large-scale ancient tidal bedforms. Example from Dur At Talah outcrop, Late Eocene, Sirt Basin, Libya

    NASA Astrophysics Data System (ADS)

    Abouessa, Ashour; Duringer, Philippe; Schuster, Mathieu; Pelletier, Jonathan; Rubino, Jean-Loup

    2014-12-01

    The Dur At Talah escarpment (150 m thick and 150 km long) is exposed at the southern side of the Sirt Basin, central Libya. This outcrop exposes an Upper Eocene succession, composed by highly bioturbated fine grained sandstones to claystones at the base (New Idam Unit; 80-100 m thick), overlain by medium grained to microconglomeratic sandstones at the top (Sarir Unit; 60 m thick). The latter is split into two subunits of nearly equal thickness: the lower Sarir subunit, composed of medium to coarse cross-bedded sandstones; and the upper Sarir subunit, composed of very coarse to microconglomeratic sandstones. The whole succession evolves from shallow marine estuarine (the New Idam Unit) to fluvial deposits (the upper Sarir subunit). The sandstone of the lower Sarir subunit, which is the focus of this article, is previously misinterpreted as being deposited in a purely fluvial environment. However, close observations revealed that the depositional environment is largely tide-influenced. It is notably marked by conspicuous subaqueous dune cross-stratifications that bear a variety of discrete, multi-scale, sedimentary structures evidencing their deposition in tidal rather than fluvial setting. Mud drapes, tidal bundles, and perpendicularly draining and oppositely climbing ripples are largely developed. Among these structures, the most diagnostic are of millimetric to centimetric scale. As a prime aim of this article, all these sedimentary structures are described, interpreted, and discussed for the first time from this outcrop. Their style of association and the quality of their preservation provide an outstanding ancient example of tide-dominated siliciclastic systems. Such structures are rarely found together in one outcrop as they are in Dur At Talah, and they provide a significant indicators in identifying ancient bedforms of tidal origin. Evidences of subtidal and intertidal depositional environments are afforded by these structures. Criteria indicative of

  20. Large and small-scale structures and the dust energy balance problem in spiral galaxies

    NASA Astrophysics Data System (ADS)

    Saftly, W.; Baes, M.; De Geyter, G.; Camps, P.; Renaud, F.; Guedes, J.; De Looze, I.

    2015-04-01

    The interstellar dust content in galaxies can be traced in extinction at optical wavelengths, or in emission in the far-infrared. Several studies have found that radiative transfer models that successfully explain the optical extinction in edge-on spiral galaxies generally underestimate the observed FIR/submm fluxes by a factor of about three. In order to investigate this so-called dust energy balance problem, we use two Milky Way-like galaxies produced by high-resolution hydrodynamical simulations. We create mock optical edge-on views of these simulated galaxies (using the radiative transfer code SKIRT), and we then fit the parameters of a basic spiral galaxy model to these images (using the fitting code FitSKIRT). The basic model includes smooth axisymmetric distributions along a Sérsic bulge and exponential disc for the stars, and a second exponential disc for the dust. We find that the dust mass recovered by the fitted models is about three times smaller than the known dust mass of the hydrodynamical input models. This factor is in agreement with previous energy balance studies of real edge-on spiral galaxies. On the other hand, fitting the same basic model to less complex input models (e.g. a smooth exponential disc with a spiral perturbation or with random clumps), does recover the dust mass of the input model almost perfectly. Thus it seems that the complex asymmetries and the inhomogeneous structure of real and hydrodynamically simulated galaxies are a lot more efficient at hiding dust than the rather contrived geometries in typical quasi-analytical models. This effect may help explain the discrepancy between the dust emission predicted by radiative transfer models and the observed emission in energy balance studies for edge-on spiral galaxies.

  1. Large Scale Laser Two-Photon Polymerization Structuring for Fabrication of Artificial Polymeric Scaffolds for Regenerative Medicine

    SciTech Connect

    Malinauskas, M.; Purlys, V.; Zukauskas, A.; Rutkauskas, M.; Danilevicius, P.; Paipulas, D.; Bickauskaite, G.; Gadonas, R.; Piskarskas, A.; Bukelskis, L.; Baltriukiene, D.; Bukelskiene, V.; Sirmenis, R.; Gaidukeviciute, A.; Sirvydis, V.

    2010-11-10

    We present a femtosecond Laser Two-Photon Polymerization (LTPP) system of large scale three-dimensional structuring for applications in tissue engineering. The direct laser writing system enables fabrication of artificial polymeric scaffolds over a large area (up to cm in lateral size) with sub-micrometer resolution which could find practical applications in biomedicine and surgery. Yb:KGW femtosecond laser oscillator (Pharos, Light Conversion. Co. Ltd.) is used as an irradiation source (75 fs, 515 nm (frequency doubled), 80 MHz). The sample is mounted on wide range linear motor driven stages having 10 nm sample positioning resolution (XY--ALS130-100, Z--ALS130-50, Aerotech, Inc.). These stages guarantee an overall travelling range of 100 mm into X and Y directions and 50 mm in Z direction and support the linear scanning speed up to 300 mm/s. By moving the sample three-dimensionally the position of laser focus in the photopolymer is changed and one is able to write complex 3D (three-dimensional) structures. An illumination system and CMOS camera enables online process monitoring. Control of all equipment is automated via custom made computer software ''3D-Poli'' specially designed for LTPP applications. Structures can be imported from computer aided design STereoLihography (stl) files or programmed directly. It can be used for rapid LTPP structuring in various photopolymers (SZ2080, AKRE19, PEG-DA-258) which are known to be suitable for bio-applications. Microstructured scaffolds can be produced on different substrates like glass, plastic and metal. In this paper, we present microfabricated polymeric scaffolds over a large area and growing of adult rabbit myogenic stem cells on them. Obtained results show the polymeric scaffolds to be applicable for cell growth practice. It exhibit potential to use it for artificial pericardium in the experimental model in the future.

  2. Large Scale Laser Two-Photon Polymerization Structuring for Fabrication of Artificial Polymeric Scaffolds for Regenerative Medicine

    NASA Astrophysics Data System (ADS)

    Malinauskas, M.; Purlys, V.; Žukauskas, A.; Rutkauskas, M.; Danilevičius, P.; Paipulas, D.; Bičkauskaitė, G.; Bukelskis, L.; Baltriukienė, D.; Širmenis, R.; Gaidukevičiutė, A.; Bukelskienė, V.; Gadonas, R.; Sirvydis, V.; Piskarskas, A.

    2010-11-01

    We present a femtosecond Laser Two-Photon Polymerization (LTPP) system of large scale three-dimensional structuring for applications in tissue engineering. The direct laser writing system enables fabrication of artificial polymeric scaffolds over a large area (up to cm in lateral size) with sub-micrometer resolution which could find practical applications in biomedicine and surgery. Yb:KGW femtosecond laser oscillator (Pharos, Light Conversion. Co. Ltd.) is used as an irradiation source (75 fs, 515 nm (frequency doubled), 80 MHz). The sample is mounted on wide range linear motor driven stages having 10 nm sample positioning resolution (XY—ALS130-100, Z—ALS130-50, Aerotech, Inc.). These stages guarantee an overall travelling range of 100 mm into X and Y directions and 50 mm in Z direction and support the linear scanning speed up to 300 mm/s. By moving the sample three-dimensionally the position of laser focus in the photopolymer is changed and one is able to write complex 3D (three-dimensional) structures. An illumination system and CMOS camera enables online process monitoring. Control of all equipment is automated via custom made computer software "3D-Poli" specially designed for LTPP applications. Structures can be imported from computer aided design STereoLihography (stl) files or programmed directly. It can be used for rapid LTPP structuring in various photopolymers (SZ2080, AKRE19, PEG-DA-258) which are known to be suitable for bio-applications. Microstructured scaffolds can be produced on different substrates like glass, plastic and metal. In this paper, we present microfabricated polymeric scaffolds over a large area and growing of adult rabbit myogenic stem cells on them. Obtained results show the polymeric scaffolds to be applicable for cell growth practice. It exhibit potential to use it for artificial pericardium in the experimental model in the future.

  3. Structural Validity of the Tonic Immobility Scale in a Population Exposed to Trauma: Evidence from Two Large Brazilian Samples

    PubMed Central

    Reichenheim, Michael; Souza, Wanderson; Coutinho, Evandro Silva Freire; Figueira, Ivan; Quintana, Maria Inês; de Mello, Marcelo Feijó; Bressan, Rodrigo Affonseca; de Jesus Mari, Jair; Andreoli, Sergio Baxter

    2014-01-01

    Background Tonic Immobility is a temporary state of motor inhibition in situations involving extreme fear. The first scale developed for its assessment was the 10-item Tonic Immobility Scale (TIS). However, there are still few studies on its structural (dimensional) validity. The objective of this study was to reassess the factor structure of the TIS applied to representative samples exposed to general trauma of two Brazilian mega-cities. Methods The sample comprised 3,223 participants reporting at least one traumatic experience. In São Paulo (n = 2,148), a Confirmatory Factor Analysis (CFA) first tested the originally proposed two-dimensional structure. This was followed by sequential Exploratory Structural Equation Models to identify the best fitting model, and subsequently tested in Rio de Janeiro (n = 1,075) via CFA. Alternative reduced versions were further explored using the aggregate sample. Model-based Item Response Theory (IRT) location parameters were also investigated. Results An absence of factor-based convergent and discriminant validity rejected the original proposition. However, the one-dimensional structure still held several residual correlations. Further exploration indicated the sustainability of reduced versions with seven (alternative A) and six (alternative B) items. Both presented excellent fit and no relevant residual item correlation. According to the IRT location parameters, items in alternative B covered a wider range of the latent trait. The Loevinger's H scalability coefficients underscored this pattern. Conclusions The original model did not hold. A one-factor solution was the most tenable in both large samples, but with significant item residual correlations, indicating that content redundancies persisted. Further reduced and simplified versions of the TIS proved promising. Although studies are yet to be carried out in other settings, it is the authors' impression that the restricted versions of the TIS are already apt for

  4. Large- and small-scale structure of the intermediate- and high-velocity clouds towards the LMC and SMC

    NASA Astrophysics Data System (ADS)

    Smoker, J. V.; Fox, A. J.; Keenan, F. P.

    2015-08-01

    We employ Ca II K and Na I D interstellar absorption-line spectroscopy of early-type stars in the Large and Small Magellanic Clouds (LMC, SMC) to investigate the large- and small-scale structure in foreground intermediate- and high-velocity clouds (I/HVCs). Data include FLAMES-GIRAFFE Ca II K observations of 403 stars in four open clusters, plus FEROS or UVES spectra of 156 stars in the LMC and SMC. The FLAMES observations are amongst the most extensive probes to date of Ca II structures on ˜20 arcsec scales in Magellanic I/HVCs. From the FLAMES data within a 0.5° field of view, the Ca II K equivalent width in the I/HVC components towards three clusters varies by factors of ≥10. There are no detections of molecular gas in absorption at intermediate or high velocities, although molecular absorption is present at LMC and Galactic velocities towards some sightlines. The FEROS/UVES data show Ca II K I/HVC absorption in ˜60 per cent of sightlines. The range in the Ca II/Na I ratio in I/HVCs is from -0.45 to +1.5 dex, similar to previous measurements for I/HVCs. In 10 sightlines we find Ca II/O I ratios in I/HVC gas ranging from 0.2 to 1.5 dex below the solar value, indicating either dust or ionization effects. In nine sightlines I/HVC gas is detected in both H I and Ca II at similar velocities, implying that the two elements form part of the same structure.

  5. GRASP92: a package for large-scale relativistic atomic structure calculations

    NASA Astrophysics Data System (ADS)

    Parpia, F. A.; Froese Fischer, C.; Grant, I. P.

    2006-12-01

    of CSFs sharing the same quantum numbers is determined using the configuration-interaction (CI) procedure that results upon varying the expansion coefficients to determine the extremum of a variational functional. Radial functions may be determined by numerically solving the multiconfiguration Dirac-Fock (MCDF) equations that result upon varying the orbital radial functions or some subset thereof so as to obtain an extremum of the variational functional. Radial wavefunctions may also be determined using a screened hydrogenic or Thomas-Fermi model, although these schemes generally provide initial estimates for MCDF self-consistent-field (SCF) calculations. Transition properties for pairs of ASFs are computed from matrix elements of multipole operators of the electromagnetic field. All matrix elements of CSFs are evaluated using the Racah algebra. Reasons for the new version: During recent studies using the general relativistic atomic structure package (GRASP92), several errors were found, some of which might have been present already in the earlier GRASP92 version (program ABJN_v1_0, Comput. Phys. Comm. 55 (1989) 425). These errors were reported and discussed by Froese Fischer, Gaigalas, and Ralchenko in a separate publication [C. Froese Fischer, G. Gaigalas, Y. Ralchenko, Comput. Phys. Comm. 175 (2006) 738-744. [7

  6. The topology of large-scale structure. I - Topology and the random phase hypothesis. [galactic formation models

    NASA Technical Reports Server (NTRS)

    Weinberg, David H.; Gott, J. Richard, III; Melott, Adrian L.

    1987-01-01

    Many models for the formation of galaxies and large-scale structure assume a spectrum of random phase (Gaussian), small-amplitude density fluctuations as initial conditions. In such scenarios, the topology of the galaxy distribution on large scales relates directly to the topology of the initial density fluctuations. Here a quantitative measure of topology - the genus of contours in a smoothed density distribution - is described and applied to numerical simulations of galaxy clustering, to a variety of three-dimensional toy models, and to a volume-limited sample of the CfA redshift survey. For random phase distributions the genus of density contours exhibits a universal dependence on threshold density. The clustering simulations show that a smoothing length of 2-3 times the mass correlation length is sufficient to recover the topology of the initial fluctuations from the evolved galaxy distribution. Cold dark matter and white noise models retain a random phase topology at shorter smoothing lengths, but massive neutrino models develop a cellular topology.

  7. MICA sounding rocket observations of conductivity-gradient-generated auroral ionospheric responses: Small-scale structure with large-scale drivers

    NASA Astrophysics Data System (ADS)

    Lynch, K. A.; Hampton, D. L.; Zettergren, M.; Bekkeng, T. A.; Conde, M.; Fernandes, P. A.; Horak, P.; Lessard, M.; Miceli, R.; Michell, R.; Moen, J.; Nicolls, M.; Powell, S. P.; Samara, M.

    2015-11-01

    A detailed, in situ study of field-aligned current (FAC) structure in a transient, substorm expansion phase auroral arc is conducted using electric field, magnetometer, and electron density measurements from the Magnetosphere-Ionosphere Coupling in the Alfvén Resonator (MICA) sounding rocket, launched from Poker Flat, AK. These data are supplemented with larger-scale, contextual measurements from a heterogeneous collection of ground-based instruments including the Poker Flat incoherent scatter radar and nearby scanning doppler imagers and filtered all-sky cameras. An electrostatic ionospheric modeling case study of this event is also constructed by using available data (neutral winds, electron precipitation, and electric fields) to constrain model initial and boundary conditions. MICA magnetometer data are converted into FAC measurements using a sheet current approximation and show an up-down current pair, with small-scale current density and Poynting flux structures in the downward current channel. Model results are able to roughly recreate only the large-scale features of the field-aligned currents, suggesting that observed small-scale structures may be due to ionospheric feedback processes not encapsulated by the electrostatic model. The model is also used to assess the contributions of various processes to total FAC and suggests that both conductance gradients and neutral dynamos may contribute significantly to FACs in a narrow region where the current transitions from upward to downward. Comparison of Poker Flat Incoherent Scatter Radar versus in situ electric field estimates illustrates the high sensitivity of FAC estimates to measurement resolution.

  8. Large-scale micromagnetic simulation of Nd-Fe-B sintered magnets with Dy-rich shell structures

    NASA Astrophysics Data System (ADS)

    Oikawa, T.; Yokota, H.; Ohkubo, T.; Hono, K.

    2016-05-01

    Large-scale micromagnetic simulations have been performed using the energy minimization method on a model with structural features similar to those of Dy grain boundary diffusion (GBD)-processed sintered magnets. Coercivity increases as a linear function of the anisotropy field of the Dy-rich shell, which is independent of Dy composition in the core as long as the shell thickness is greater than about 15 nm. This result shows that the Dy contained in the initial sintered magnets prior to the GBD process is not essential for enhancing coercivity. Magnetization reversal patterns indicate that coercivity is strongly influenced by domain wall pinning at the grain boundary. This observation is found to be consistent with the one-dimensional pinning theory.

  9. Robotic large-scale application of wheat cell-free translation to structural studies including membrane proteins.

    PubMed

    Beebe, Emily T; Makino, Shin-Ichi; Nozawa, Akira; Matsubara, Yuko; Frederick, Ronnie O; Primm, John G; Goren, Michael A; Fox, Brian G

    2011-04-30

    The use of the Protemist XE, an automated discontinuous-batch protein synthesis robot, in cell-free translation is reported. The soluble Galdieria sulphuraria protein DCN1 was obtained in greater than 2mg total synthesis yield per mL of reaction mixture from the Protemist XE, and the structure was subsequently solved by X-ray crystallography using material from one 10 mL synthesis (PDB ID: 3KEV). The Protemist XE was also capable of membrane protein translation. Thus human sigma-1 receptor was translated in the presence of unilamellar liposomes and bacteriorhodopsin was translated directly into detergent micelles in the presence of all-trans-retinal. The versatility, ease of use, and compact size of the Protemist XE robot demonstrate its suitability for large-scale synthesis of many classes of proteins.

  10. ARPACK: Solving large scale eigenvalue problems

    NASA Astrophysics Data System (ADS)

    Lehoucq, Rich; Maschhoff, Kristi; Sorensen, Danny; Yang, Chao

    2013-11-01

    ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. The package is designed to compute a few eigenvalues and corresponding eigenvectors of a general n by n matrix A. It is most appropriate for large sparse or structured matrices A where structured means that a matrix-vector product w

  11. The imprint of f(R) gravity on weak gravitational lensing - I. Connection between observables and large-scale structure

    NASA Astrophysics Data System (ADS)

    Higuchi, Yuichi; Shirasaki, Masato

    2016-07-01

    We study the effect of f(R) gravity on the statistical properties of various large-scale structures which can be probed in weak gravitational lensing measurements. A set of ray-tracing simulations of gravitational lensing in f(R) gravity enables us to explore cosmological information on (i) stacking analyses of weak lensing observables and (ii) peak statistics in reconstructed lensing mass maps. For the f(R) model proposed by Hu & Sawicki, the measured lensing signals of dark matter haloes in the stacking analysis would show a ≲10 per cent difference between the standard Λcold dark matter and the f(R) model when the additional degree of freedom in f(R) model would be |fR0| ˜ 10-5. Among various large-scale structures to be studied in stacking analysis, troughs, i.e. underdensity regions in projected plane of foreground massive haloes, could be promising to constrain the model with |fR0| ˜ 10-5, while stacking analysis around voids is found to be difficult to improve the constraint of |fR0| even in future lensing surveys with a sky coverage of ˜1000 deg2. On the peak statistics, we confirm the correspondence between local maxima and dark matter haloes along the line of sight, regardless of the modification of gravity in our simulation. Thus, the number count of high significance local maxima would be useful to probe the mass function of dark matter haloes even in the f(R) model with |fR0| ≲ 10-5. We also find that including local minima in lensing mass maps would be helpful to improve the constant on f(R) gravity down to |fR0| = 10-5 in ongoing weak lensing surveys.

  12. Searching for a correlation between cosmic-ray sources above 10{sup 19} eV and large scale structure

    SciTech Connect

    Kashti, Tamar; Waxman, Eli E-mail: eli.waxman@weizmann.ac.il

    2008-05-15

    We study the anisotropy signature which is expected if the sources of ultrahigh energy, >10{sup 19} eV, cosmic rays (UHECRs) are extra-galactic and trace the large scale distribution of luminous matter. Using the PSCz galaxy catalog as a tracer of the large scale structure (LSS), we derive the expected all sky angular distribution of the UHECR intensity. We define a statistic that measures the correlation between the predicted and observed UHECR arrival direction distributions, and show that it is more sensitive to the expected anisotropy signature than the power spectrum and the two-point correlation function. The distribution of the correlation statistic is not sensitive to the unknown redshift evolution of UHECR source density and to the unknown strength and structure of inter-galactic magnetic fields. We show, using this statistic, that recently published >5.7 Multiplication-Sign 10{sup 19} eV Auger data are inconsistent with isotropy at Asymptotically-Equal-To 98% CL, and consistent with a source distribution that traces LSS, with some preference for a source distribution that is biased with respect to the galaxy distribution. The anisotropy signature should be detectable also at lower energy, >4 Multiplication-Sign 10{sup 19} eV. A few-fold increase of the Auger exposure is likely to increase the significance to >99% CL, but not to>99.9% CL (unless the UHECR source density is comparable to or larger than that of galaxies). In order to distinguish between different bias models, the systematic uncertainty in the absolute energy calibration of the experiments should be reduced to well below the current Asymptotically-Equal-To 25%.

  13. Large-scale patterns of epiphytic lichen species richness: photobiont-dependent response to climate and forest structure.

    PubMed

    Marini, Lorenzo; Nascimbene, Juri; Nimis, Pier Luigi

    2011-09-15

    Lichens are composite organisms consisting of a symbiotic association of a fungus with a photosynthetic partner. Although the photobiont type is a key life-history trait, tests of the potential differential role of the main photobiont types in shaping large-scale patterns of lichen species richness are still absent. The aim of the study was to test the influences of forest structure and climate on epiphytic lichen species richness across Italy and to see whether these relationships change for groups of species sharing different photobiont types. Regional species richness of epiphytic lichens divided into three main photobiont types (i.e. chlorococcoid green algae, cyanobacteria, and Trentepohlia algae) was retrieved for each of the 20 administrative regions. Multiple linear regression was used to quantify the effect of climate and forest structure, and their potential interaction, on the regional species richness for the three photobiont types, accounting also for the effect of regional area. Regional species richness was associated with both climate and forest structure variables but the relationships with both factors were largely photobiont dependent. Regional area and precipitation were the only predictors included in all the models, confirming the strong dependence of lichens on atmospheric water supply, irrespective of the photobiont type. Number of species with chlorococcoid green algae were further positively associated with cover of high forest, whilst lichens with Trentepohlia were further enhanced by warm temperatures. Cyanolichen species richness was only related to area and precipitation. Our study shed light on the relative importance of climate and forest structure on lichen species richness patterns at the macroscale, showing a differential response of the photobiont types to various environmental determinants. This differential response suggested that the current and future impacts of global change on lichens cannot be generalized and that species

  14. Large-scale patterns of epiphytic lichen species richness: photobiont-dependent response to climate and forest structure.

    PubMed

    Marini, Lorenzo; Nascimbene, Juri; Nimis, Pier Luigi

    2011-09-15

    Lichens are composite organisms consisting of a symbiotic association of a fungus with a photosynthetic partner. Although the photobiont type is a key life-history trait, tests of the potential differential role of the main photobiont types in shaping large-scale patterns of lichen species richness are still absent. The aim of the study was to test the influences of forest structure and climate on epiphytic lichen species richness across Italy and to see whether these relationships change for groups of species sharing different photobiont types. Regional species richness of epiphytic lichens divided into three main photobiont types (i.e. chlorococcoid green algae, cyanobacteria, and Trentepohlia algae) was retrieved for each of the 20 administrative regions. Multiple linear regression was used to quantify the effect of climate and forest structure, and their potential interaction, on the regional species richness for the three photobiont types, accounting also for the effect of regional area. Regional species richness was associated with both climate and forest structure variables but the relationships with both factors were largely photobiont dependent. Regional area and precipitation were the only predictors included in all the models, confirming the strong dependence of lichens on atmospheric water supply, irrespective of the photobiont type. Number of species with chlorococcoid green algae were further positively associated with cover of high forest, whilst lichens with Trentepohlia were further enhanced by warm temperatures. Cyanolichen species richness was only related to area and precipitation. Our study shed light on the relative importance of climate and forest structure on lichen species richness patterns at the macroscale, showing a differential response of the photobiont types to various environmental determinants. This differential response suggested that the current and future impacts of global change on lichens cannot be generalized and that species

  15. Lagrangian or Eulerian; real or Fourier? Not all approaches to large-scale structure are created equal

    SciTech Connect

    Tassev, Svetlin

    2014-06-01

    We present a pedagogical systematic investigation of the accuracy of Eulerian and Lagrangian perturbation theories of large-scale structure. We show that significant differences exist between them especially when trying to model the Baryon Acoustic Oscillations (BAO). We find that the best available model of the BAO in real space is the Zel'dovich Approximation (ZA), giving an accuracy of ∼<3% at redshift of z = 0 in modelling the matter 2-pt function around the acoustic peak. All corrections to the ZA around the BAO scale are perfectly perturbative in real space. Any attempt to achieve better precision requires calibrating the theory to simulations because of the need to renormalize those corrections. In contrast, theories which do not fully preserve the ZA as their solution, receive O(1) corrections around the acoustic peak in real space at z = 0, and are thus of suspicious convergence at low redshift around the BAO. As an example, we find that a similar accuracy of 3% for the acoustic peak is achieved by Eulerian Standard Perturbation Theory (SPT) at linear order only at z ≈ 4. Thus even when SPT is perturbative, one needs to include loop corrections for z∼<4 in real space. In Fourier space, all models perform similarly, and are controlled by the overdensity amplitude, thus recovering standard results. However, that comes at a price. Real space cleanly separates the BAO signal from non-linear dynamics. In contrast, Fourier space mixes signal from short mildly non-linear scales with the linear signal from the BAO to the level that non-linear contributions from short scales dominate. Therefore, one has little hope in constructing a systematic theory for the BAO in Fourier space.

  16. Very Large Scale Integration (VLSI).

    ERIC Educational Resources Information Center

    Yeaman, Andrew R. J.

    Very Large Scale Integration (VLSI), the state-of-the-art production techniques for computer chips, promises such powerful, inexpensive computing that, in the future, people will be able to communicate with computer devices in natural language or even speech. However, before full-scale VLSI implementation can occur, certain salient factors must be…

  17. Simulation of large scale motions and small scale structures in planetary atmospheres and oceans: From laboratory to space experiments on ISS

    NASA Astrophysics Data System (ADS)

    Egbers, Christoph; Futterer, Birgit; Zaussinger, Florian; Harlander, Uwe

    2014-05-01

    Baroclinic waves are responsible for the transport of heat and momentum in the oceans, in the Earth's atmosphere as well as in other planetary atmospheres. The talk will give an overview on possibilities to simulate such large scale as well as co-existing small scale structures with the help of well defined laboratory experiments like the baroclinic wave tank (annulus experiment). The analogy between the Earth's atmosphere and the rotating cylindrical annulus experiment only driven by rotation and differential heating between polar and equatorial regions is obvious. From the Gulf stream single vortices seperate from time to time. The same dynamics and the co-existence of small and large scale structures and their separation can be also observed in laboratory experiments as in the rotating cylindrical annulus experiment. This experiment represents the mid latitude dynamics quite well and is part as a central reference experiment in the German-wide DFG priority research programme ("METSTRÖM", SPP 1276) yielding as a benchmark for lot of different numerical methods. On the other hand, those laboratory experiments in cylindrical geometry are limited due to the fact, that the surface and real interaction between polar and equatorial region and their different dynamics can not be really studied. Therefore, I demonstrate how to use the very successful Geoflow I and Geoflow II space experiment hardware on ISS with future modifications for simulations of small and large scale planetary atmospheric motion in spherical geometry with differential heating between inner and outer spheres as well as between the polar and equatorial regions. References: Harlander, U., Wenzel, J., Wang, Y., Alexandrov, K. & Egbers, Ch., 2012, Simultaneous PIV- and thermography measurements of partially blocked flow in a heated rotating annulus, Exp. in Fluids, 52 (4), 1077-1087 Futterer, B., Krebs, A., Plesa, A.-C., Zaussinger, F., Hollerbach, R., Breuer, D. & Egbers, Ch., 2013, Sheet-like and

  18. The Evolution Of 21 cm Structure (EOS): public, large-scale simulations of Cosmic Dawn and reionization

    NASA Astrophysics Data System (ADS)

    Mesinger, Andrei; Greig, Bradley; Sobacchi, Emanuele

    2016-07-01

    We introduce the Evolution Of 21 cm Structure (EOS) project: providing periodic, public releases of the latest cosmological 21 cm simulations. 21 cm interferometry is set to revolutionize studies of the Cosmic Dawn (CD) and Epoch of Reionization (EoR). Progress will depend on sophisticated data analysis pipelines, initially tested on large-scale mock observations. Here we present the 2016 EOS release: 10243, 1.6 Gpc, 21 cm simulations of the CD and EoR, calibrated to the Planck 2015 measurements. We include calibrated, sub-grid prescriptions for inhomogeneous recombinations and photoheating suppression of star formation in small-mass galaxies. Leaving the efficiency of supernovae feedback as a free parameter, we present two runs which bracket the contribution from faint unseen galaxies. From these two extremes, we predict that the duration of reionization (defined as a change in the mean neutral fraction from 0.9 to 0.1) should be between 2.7 ≲ Δzre ≲ 5.7. The large-scale 21 cm power during the advanced EoR stages can be different by up to a factor of ˜10, depending on the model. This difference has a comparable contribution from (i) the typical bias of sources and (ii) a more efficient negative feedback in models with an extended EoR driven by faint galaxies. We also present detectability forecasts. With a 1000 h integration, Hydrogen Epoch of Reionization Array and (Square Kilometre Array phase 1) SKA1 should achieve a signal-to-noise of ˜few to hundreds throughout the EoR/CD. We caution that our ability to clean foregrounds determines the relative performance of narrow/deep versus wide/shallow surveys expected with SKA1. Our 21-cm power spectra, simulation outputs and visualizations are publicly available.

  19. Assessing water quality at large geographic scales: Relations among land use, water physicochemistry, riparian condition, and fish community structure

    USGS Publications Warehouse

    Meador, M.R.; Goldstein, R.M.

    2003-01-01

    Data collected from 172 sites in 20 major river basins between 1993 and 1995 as part of the US Geological Survey's National Water-Quality Assessment Program were analyzed to assess relations among basinwide land use (agriculture, forest, urban, range), water physicochemistry, riparian condition, and fish community structure. A multimetric approach was used to develop regionally referenced indices of fish community and riparian condition. Across large geographic areas, decreased riparian condition was associated with water-quality constituents indicative of nonpoint source inputs-total nitrogen and suspended sediment and basin-wide urban land use. Decreased fish community condition was associated with increases in total dissolved solids and rangeland use and decreases in riparian condition and agricultural land use. Fish community condition was relatively high even in areas where agricultural land use was relatively high (>50% of the basin). Although agricultural land use can have deleterious effects on fish communities, the results of this study suggest that other factors also may be important, including practices that regulate the delivery of nutrients, suspended sediments, and total dissolved solids into streams. Across large geographic scales, measures of water physicochemistry may be better indicators of fish community condition than basinwide land use. Whereas numerous studies have indicated that riparian restorations are successful in specific cases, this analysis suggests the universal importance of riparian zones to the maintenance and restoration of diverse fish communities in streams.

  20. The eROSITA/SRG All-Sky Survey: A new era of large-scale structure studies with AGN

    NASA Astrophysics Data System (ADS)

    Kolodzig, A.; Gilfanov, M.; H"utsi, G.; Sunyaev, R.

    2014-07-01

    The four-year X-ray all-sky survey (eRASS) of the eROSITA telescope aboard the Spektrum-Roentgen-Gamma (SRG) satellite will detect ˜3 million active galactic nuclei (AGN) with a median redshift of z≈1 and typical luminosity of L_{0.5-2.0keV}˜10^{44} erg s^{-1}. We show that this unprecedented AGN sample, complemented with redshift information, will supply us with outstanding opportunities for large-scale structure research. For the first time with a sample of X-ray selected AGN, it will become possible to perform detailed redshift- and luminosity-resolved studies of the linear bias factor. These studies will dramatically improve our understanding of AGN environment, triggering mechanisms, growth of super-massive black holes and their co-evolution with dark matter halos. The eROSITA AGN sample will become a powerful cosmological probe. It will become possible to convincingly detect baryonic acoustic oscillations (BAOs) with ˜8σ confidence in the 0.8large areas and a sufficient depth will be needed.

  1. Study of materials and machines for 3D printed large-scale, flexible electronic structures using fused deposition modeling

    NASA Astrophysics Data System (ADS)

    Hwang, Seyeon

    The 3 dimensional printing (3DP), called to additive manufacturing (AM) or rapid prototyping (RP), is emerged to revolutionize manufacturing and completely transform how products are designed and fabricated. A great deal of research activities have been carried out to apply this new technology to a variety of fields. In spite of many endeavors, much more research is still required to perfect the processes of the 3D printing techniques especially in the area of the large-scale additive manufacturing and flexible printed electronics. The principles of various 3D printing processes are briefly outlined in the Introduction Section. New types of thermoplastic polymer composites aiming to specified functional applications are also introduced in this section. Chapter 2 shows studies about the metal/polymer composite filaments for fused deposition modeling (FDM) process. Various metal particles, copper and iron particles, are added into thermoplastics polymer matrices as the reinforcement filler. The thermo-mechanical properties, such as thermal conductivity, hardness, tensile strength, and fracture mechanism, of composites are tested to figure out the effects of metal fillers on 3D printed composite structures for the large-scale printing process. In Chapter 3, carbon/polymer composite filaments are developed by a simple mechanical blending process with an aim of fabricating the flexible 3D printed electronics as a single structure. Various types of carbon particles consisting of multi-wall carbon nanotube (MWCNT), conductive carbon black (CCB), and graphite are used as the conductive fillers to provide the thermoplastic polyurethane (TPU) with improved electrical conductivity. The mechanical behavior and conduction mechanisms of the developed composite materials are observed in terms of the loading amount of carbon fillers in this section. Finally, the prototype flexible electronics are modeled and manufactured by the FDM process using Carbon/TPU composite filaments and

  2. More bilateral, more anterior: Alterations of brain organization in the large-scale structural network in Chinese dyslexia.

    PubMed

    Qi, Ting; Gu, Bin; Ding, Guosheng; Gong, Gaolang; Lu, Chunming; Peng, Danling; Malins, Jeff G; Liu, Li

    2016-01-01

    Abnormalities in large-scale brain networks have been recently reported in dyslexia; however, it remains unclear whether these abnormalities are congenital (due to dyslexia per se) or arise later in development. Here, structural magnetic resonance imaging data of 17 Chinese reading disabled (RD) and 17 age-matched typically developing (TD) children were used to construct cortical thickness (sensitive to postnatal development) and surface area (sensitive to prenatal development) networks. In the thickness network, compared to TD, RD showed reduced nodal network properties (e.g., degree and betweenness) in the left hemisphere along with enhanced nodal properties mainly in the right hemisphere. As for the surface area network, compared to TD, RD demonstrated lower nodal properties in the posterior brain regions and higher nodal properties in the anterior brain regions. Furthermore, hubs in both the thickness and surface area networks in RD were more distributed in frontal areas and less distributed in parietal areas, whereas TD showed the opposite pattern. Altogether, these findings indicate that the aberrant structural connectivity in the dyslexic individuals was not only due to a late developmental effect reflected in the altered thickness network, but may also be a congenital effect during prenatal development, reflected in the altered surface network.

  3. Bayesian non-linear large-scale structure inference of the Sloan Digital Sky Survey Data Release 7

    NASA Astrophysics Data System (ADS)

    Jasche, Jens; Kitaura, Francisco S.; Li, Cheng; Enßlin, Torsten A.

    2010-11-01

    In this work, we present the first non-linear, non-Gaussian full Bayesian large-scale structure analysis of the cosmic density field conducted so far. The density inference is based on the Sloan Digital Sky Survey (SDSS) Data Release 7, which covers the northern galactic cap. We employ a novel Bayesian sampling algorithm, which enables us to explore the extremely high dimensional non-Gaussian, non-linear lognormal Poissonian posterior of the three-dimensional density field conditional on the data. These techniques are efficiently implemented in the Hamiltonian Density Estimation and Sampling (HADES) computer algorithm and permit the precise recovery of poorly sampled objects and non-linear density fields. The non-linear density inference is performed on a 750-Mpc cube with roughly 3-Mpc grid resolution, while accounting for systematic effects, introduced by survey geometry and selection function of the SDSS, and the correct treatment of a Poissonian shot noise contribution. Our high-resolution results represent remarkably well the cosmic web structure of the cosmic density field. Filaments, voids and clusters are clearly visible. Further, we also conduct a dynamical web classification and estimate the web-type posterior distribution conditional on the SDSS data.

  4. Numerical Investigation on Large Scale Eddy Structure in Unsteady Pipe Elbow Flow at High Reynolds Number Conditions with Large Eddy Simulation Approach

    NASA Astrophysics Data System (ADS)

    Tanaka, Masaaki; Ohshima, Hiroyuki

    Flow induced vibration in primary cooling system of the Japan Sodium cooled Fast Reactor (JSFR) has been investigated. The primary cooling system consists of a large diameter pipe and a pipe elbow with short curvature radius corresponding to its diameter (short-elbow). Flow-induced vibration by flow through the short-elbow is an important issue in design study of the JSFR, because it may affect to structural integrity of the piping. In this paper, numerical simulations for several pipe elbows with different pipe diameters and curvature radii in literature were conducted at Reynolds number conditions from Re=500 to 1.47x107 to investigate unsteady flow behavior through the short-elbow, including validation study of an in-house LES code (MUGTHES). Numerical results in each condition were compared with the experimental results in literature. Unsteady flow characteristics and pressure fluctuation generation mechanism in the short-elbow were clarified in relation to the large-scale eddy motion.

  5. Large-scale isolation of flavonolignans from Silybum marianum extract affords new minor constituents and preliminary structure-activity relationships.

    PubMed

    Sy-Cordero, Arlene; Graf, Tyler N; Nakanishi, Yuka; Wani, Mansukh C; Agarwal, Rajesh; Kroll, David J; Oberlies, Nicholas H

    2010-04-01

    The gram-scale isolation of the major flavonolignan diastereoisomers from milk thistle ( Silybum marianum) extract provided an entree into the isolation of two related analogues that are present in extremely minute quantities. The isolation and structure elucidation of these two new compounds, which we have termed isosilybin C and isosilybin D due to their structural similarities to isosilybin A and isosilybin B, respectively, afforded a preliminary analysis of structure-activity relationships toward prostate cancer growth, survival, and apoptotic endpoints.

  6. Formation of pseudotachylitic breccias in the central uplifts of very large impact structures: Scaling the melt formation

    NASA Astrophysics Data System (ADS)

    Mohr-Westheide, Tanja; Reimold, Wolf Uwe

    2011-04-01

    estimated at 5.2 dm3. This amount can be divided into 4.6 dm3 melt (88%), for which we have evidenced a limited material transport (at maximum, ≈20 cm) and 0.6 dm3 melt (12%) with, at most, grain-scale material transport, which we consider in situ formed shock melt. The breccia zone itself contains about 10 dm3 of matrix (melt). Assuming melt exchange over 20 cm at the slab surface, between breccia zone and surrounding melt-bearing host rock volume, the outer melt volume is calculated to contain the same amount of melt as contained by the massive breccia zone. Meso- and microscopic observations indicate melt transport is more prominent from larger into smaller melt occurrences. Thus, melt of the breccia zone could have provided the melt fill for all the small-scale PTB veins in the surrounding target rock. Extrapolating this melt capacity calculation for 1 m3 PTB-bearing host rock shows that a host rock volume of this dimension is able to take up some 52 dm3 melt. Scaling up 1000-fold to the outcrop scale reveals that exchange between a host rock volume of 2 m radius around a 37 m3 breccia zone could involve some 10 m3 melt. These results demonstrate that large melt volumes (i.e., large breccia zones) can be derived, in principle, from local reservoirs. However, strong decompression would have to apply in order to exchange these considerable melt volumes, which would only be realistic during the decompression phase of impact cratering upon central uplift formation, or locally where compressive regimes acted during the subsequent down- and outward collapse of the central uplift.

  7. Modeling the MJO rain rates using parameterized large scale dynamics: vertical structure, radiation, and horizontal advection of dry air

    NASA Astrophysics Data System (ADS)

    Wang, S.; Sobel, A. H.; Nie, J.

    2015-12-01

    Two Madden Julian Oscillation (MJO) events were observed during October and November 2011 in the equatorial Indian Ocean during the DYNAMO field campaign. Precipitation rates and large-scale vertical motion profiles derived from the DYNAMO northern sounding array are simulated in a small-domain cloud-resolving model using parameterized large-scale dynamics. Three parameterizations of large-scale dynamics --- the conventional weak temperature gradient (WTG) approximation, vertical mode based spectral WTG (SWTG), and damped gravity wave coupling (DGW) --- are employed. The target temperature profiles and radiative heating rates are taken from a control simulation in which the large-scale vertical motion is imposed (rather than directly from observations), and the model itself is significantly modified from that used in previous work. These methodological changes lead to significant improvement in the results.Simulations using all three methods, with imposed time -dependent radiation and horizontal moisture advection, capture the time variations in precipitation associated with the two MJO events well. The three methods produce significant differences in the large-scale vertical motion profile, however. WTG produces the most top-heavy and noisy profiles, while DGW's is smoother with a peak in midlevels. SWTG produces a smooth profile, somewhere between WTG and DGW, and in better agreement with observations than either of the others. Numerical experiments without horizontal advection of moisture suggest that that process significantly reduces the precipitation and suppresses the top-heaviness of large-scale vertical motion during the MJO active phases, while experiments in which the effect of cloud on radiation are disabled indicate that cloud-radiative interaction significantly amplifies the MJO. Experiments in which interactive radiation is used produce poorer agreement with observation than those with imposed time-varying radiative heating. Our results highlight the

  8. Large Scale Magnetostrictive Valve Actuator

    NASA Technical Reports Server (NTRS)

    Richard, James A.; Holleman, Elizabeth; Eddleman, David

    2008-01-01

    Marshall Space Flight Center's Valves, Actuators and Ducts Design and Development Branch developed a large scale magnetostrictive valve actuator. The potential advantages of this technology are faster, more efficient valve actuators that consume less power and provide precise position control and deliver higher flow rates than conventional solenoid valves. Magnetostrictive materials change dimensions when a magnetic field is applied; this property is referred to as magnetostriction. Magnetostriction is caused by the alignment of the magnetic domains in the material s crystalline structure and the applied magnetic field lines. Typically, the material changes shape by elongating in the axial direction and constricting in the radial direction, resulting in no net change in volume. All hardware and testing is complete. This paper will discuss: the potential applications of the technology; overview of the as built actuator design; discuss problems that were uncovered during the development testing; review test data and evaluate weaknesses of the design; and discuss areas for improvement for future work. This actuator holds promises of a low power, high load, proportionally controlled actuator for valves requiring 440 to 1500 newtons load.

  9. SDSS-III Baryon Oscillation Spectroscopic Survey data release 12: Galaxy target selection and large-scale structure catalogues

    DOE PAGES

    Reid, Beth; Ho, Shirley; Padmanabhan, Nikhil; Percival, Will J.; Tinker, Jeremy; Tojeiro, Rito; White, Marin; Daniel J. Einstein; Maraston, Claudia; Ross, Ashley J.; et al

    2015-11-17

    The Baryon Oscillation Spectroscopic Survey (BOSS), part of the Sloan Digital Sky Survey (SDSS) III project, has provided the largest survey of galaxy redshifts available to date, in terms of both the number of galaxy redshifts measured by a single survey, and the effective cosmological volume covered. Key to analysing the clustering of these data to provide cosmological measurements is understanding the detailed properties of this sample. Potential issues include variations in the target catalogue caused by changes either in the targeting algorithm or properties of the data used, the pattern of spectroscopic observations, the spatial distribution of targets formore » which redshifts were not obtained, and variations in the target sky density due to observational systematics. We document here the target selection algorithms used to create the galaxy samples that comprise BOSS. We also present the algorithms used to create large-scale structure catalogues for the final Data Release (DR12) samples and the associated random catalogues that quantify the survey mask. The algorithms are an evolution of those used by the BOSS team to construct catalogues from earlier data, and have been designed to accurately quantify the galaxy sample. Furthermore, the code used, designated mksample, is released with this paper.« less

  10. Specifying a Failure Area in a Large-Scale Space Structure : Which Method is Better - Majority or Individual ?

    NASA Astrophysics Data System (ADS)

    Hattori, Kiyohiko; Takadama, Keiki; Ueno, Hiroshi; Oda, Mitsushige

    This paper analyzes the capabilities of two methods that specify a failure area in a large-scale space structure: (1) the adjoining module decision (AMD) method proposed by our previous research; and (2) a Byzantine-based decision (BBD) method which is a general method in the context of a distributed processing approach. In this paper, we investigate methods that specify a failure area from the viewpoint of a distributed processing approach. Through intensive simulations, we finally concluded that the adjoining module decision method has better capability than a Byzantine-based decision method. Other implications are summarized as follows; (1) A Byzantine-based decision method cannot specify a failure area if the number of broken modules is over 1/3 of the connected modules, while the adjoining module decision method can; (2) A Byzantine-based decision method requires more time to decide a failure area than the adjoining module decision method; (3) Neither methods can specify a failure area stably when methods do not disconnect broken modules; and (4) an AMD method does not depend on the shape of the failure area, which indicates that the AMD method is robust in many cases.

  11. SDSS-III Baryon Oscillation Spectroscopic Survey data release 12: Galaxy target selection and large-scale structure catalogues

    SciTech Connect

    Reid, Beth; Ho, Shirley; Padmanabhan, Nikhil; Percival, Will J.; Tinker, Jeremy; Tojeiro, Rito; White, Marin; Daniel J. Einstein; Maraston, Claudia; Ross, Ashley J.; Sanchez, Ariel G.; Schlegel, David; Sheldon, Erin; Strauss, Michael A.; Thomas, Daniel; Wake, David; Beutler, Florian; Bizyaev, Dmitry; Bolton, Adam S.; Brownstein, Joel R.; Chuang, Chia -Hsun; Dawson, Kyle; Harding, Paul; Kitaura, Francisco -Shu; Leauthaud, Alexie; Masters, Karen; McBride, Cameron K.; More, Surhud; Olmstead, Matthew D.; Oravetz, Daniel; Nuza, Sebastian E.; Pan, Kaike; Parejko, John; Pforr, Janine; Prada, Francisco; Rodriguez-Torres, Sergio; Salazar-Albornoz, Salvador; Samushia, Lado; Schneider, Donald P.; Scoccola, Claudia G.; Simmons, Audrey; Vargas-Magana, Mariana

    2015-11-17

    The Baryon Oscillation Spectroscopic Survey (BOSS), part of the Sloan Digital Sky Survey (SDSS) III project, has provided the largest survey of galaxy redshifts available to date, in terms of both the number of galaxy redshifts measured by a single survey, and the effective cosmological volume covered. Key to analysing the clustering of these data to provide cosmological measurements is understanding the detailed properties of this sample. Potential issues include variations in the target catalogue caused by changes either in the targeting algorithm or properties of the data used, the pattern of spectroscopic observations, the spatial distribution of targets for which redshifts were not obtained, and variations in the target sky density due to observational systematics. We document here the target selection algorithms used to create the galaxy samples that comprise BOSS. We also present the algorithms used to create large-scale structure catalogues for the final Data Release (DR12) samples and the associated random catalogues that quantify the survey mask. The algorithms are an evolution of those used by the BOSS team to construct catalogues from earlier data, and have been designed to accurately quantify the galaxy sample. Furthermore, the code used, designated mksample, is released with this paper.

  12. Characterizing Coherent Wind Structures using Large-Scale Particle Tracking Velocimetry: A Proof-of-Principle Study

    NASA Astrophysics Data System (ADS)

    Rosi, G. A.; la Bastide, B.; Gaebler, J.; Kinzel, M.; Rival, D. E.

    2014-12-01

    The following study proposes a two-dimensional large-scale particle tracking velocimetry (LS-PTV) system to characterize coherent wind structures. Seven minutes of LS-PTV data is collected via an apparatus that seeds fog-filled soap bubbles into the wind at a height of 6m from the ground. The LS-PTV data is compared to 20 minutes of data collected concurrently from a wind mast at the same site. The LS-PTV system recorded a mean streamwise velocity of 1.35m/s with a standard deviation of 0.23m/s at a mean height of 2.50m with a standard deviation of 0.7m, which agrees well with the velocity profile measured by the wind mast. Furthermore, the Reynolds stresses measured by the LS-PTV system are found to compare to those measured by the wind mast and by Klebanoff [1] for a canonical turbulent boundary layer. The current study assumes that the centre-of-curvature trajectories of the particle pathlines are representative of the trajectories followed by the spanwise vortices. As a proof-of-principle study, this work has been successful in accurately describing the vortex distribution very near to the ground. However, the trajectories followed by the centres-of- curvat.ure belonging to pathlines concurrently passing through the field-of-view were sporadic and uncorrelated.

  13. Structural Variant Detection by Large-scale Sequencing Reveals New Evolutionary Evidence on Breed Divergence between Chinese and European Pigs

    PubMed Central

    Zhao, Pengju; Li, Junhui; Kang, Huimin; Wang, Haifei; Fan, Ziyao; Yin, Zongjun; Wang, Jiafu; Zhang, Qin; Wang, Zhiquan; Liu, Jian-Feng

    2016-01-01

    In this study, we performed a genome-wide SV detection among the genomes of thirteen pigs from diverse Chinese and European originated breeds by next genetation sequencing, and constrcuted a single-nucleotide resolution map involving 56,930 putative SVs. We firstly identified a SV hotspot spanning 35 Mb region on the X chromosome specifically in the genomes of Chinese originated individuals. Further scrutinizing this region by large-scale sequencing data of extra 111 individuals, we obtained the confirmatory evidence on our initial finding. Moreover, thirty five SV-related genes within the hotspot region, being of importance for reproduction ability, rendered significant different evolution rates between Chinese and European originated breeds. The SV hotspot identified herein offers a novel evidence for assessing phylogenetic relationships, as well as likely explains the genetic difference of corresponding phenotypes and features, among Chinese and European pig breeds. Furthermore, we employed various SVs to infer genetic structure of individuls surveyed. We found SVs can clearly detect the difference of genetic background among individuals. This clues us that genome-wide SVs can capture majority of geneic variation and be applied into cladistic analyses. Characterizing whole genome SVs demonstrated that SVs are significantly enriched/depleted with various genomic features. PMID:26729041

  14. Optical depth of the Universe to ultrahigh energy cosmic ray scattering in the magnetized large scale structure

    NASA Astrophysics Data System (ADS)

    Kotera, Kumiko; Lemoine, Martin

    2008-06-01

    This paper provides an analytical description of the transport of ultrahigh energy cosmic rays in an inhomogeneously magnetized intergalactic medium. The latter is modeled as a collection of magnetized scattering centers, such as radio cocoons, magnetized galactic winds, clusters or magnetized filaments of large scale structure, with negligible magnetic fields in between. Magnetic deflection is no longer a continuous process, it is rather dominated by scattering events. We study the interaction between high-energy cosmic rays and the scattering agents. We then compute the optical depth of the Universe to cosmic ray scattering and discuss the phenomenological consequences for various source scenarios. For typical parameters of the scattering centers, the optical depth is greater than unity at 5×1019eV, but the total angular deflection is smaller than unity. One important consequence of this scenario is the possibility that the last scattering center encountered by a cosmic ray be mistaken with the source of this cosmic ray. In particular, we suggest that part of the correlation recently reported by the Pierre Auger Observatory may be affected by such delusion: this experiment may be observing in part the last scattering surface of ultrahigh energy cosmic rays rather than their source population. Since the optical depth falls rapidly with increasing energy, one should probe the arrival directions of the highest energy events beyond 1020eV on an event by event basis to circumvent this effect.

  15. Non-Gaussian covariance of the matter power spectrum in the effective field theory of large scale structure

    NASA Astrophysics Data System (ADS)

    Bertolini, Daniele; Schutz, Katelin; Solon, Mikhail P.; Walsh, Jonathan R.; Zurek, Kathryn M.

    2016-06-01

    We compute the non-Gaussian contribution to the covariance of the matter power spectrum at one-loop order in standard perturbation theory (SPT), using the framework of the effective field theory (EFT) of large scale structure (LSS). The complete one-loop contributions are evaluated for the first time, including the leading EFT corrections that involve seven independent operators, of which four appear in the power spectrum and bispectrum. We compare the non-Gaussian part of the one-loop covariance computed with both SPT and EFT of LSS to two separate simulations. In one simulation, we find that the one-loop prediction from SPT reproduces the simulation well to ki+kj˜0.25 h /Mpc , while in the other simulation we find a substantial improvement of EFT of LSS (with one free parameter) over SPT, more than doubling the range of k where the theory accurately reproduces the simulation. The disagreement between these two simulations points to unaccounted for systematics, highlighting the need for improved numerical and analytic understanding of the covariance.

  16. SDSS-III Baryon Oscillation Spectroscopic Survey Data Release 12: galaxy target selection and large-scale structure catalogues

    NASA Astrophysics Data System (ADS)

    Reid, Beth; Ho, Shirley; Padmanabhan, Nikhil; Percival, Will J.; Tinker, Jeremy; Tojeiro, Rita; White, Martin; Eisenstein, Daniel J.; Maraston, Claudia; Ross, Ashley J.; Sánchez, Ariel G.; Schlegel, David; Sheldon, Erin; Strauss, Michael A.; Thomas, Daniel; Wake, David; Beutler, Florian; Bizyaev, Dmitry; Bolton, Adam S.; Brownstein, Joel R.; Chuang, Chia-Hsun; Dawson, Kyle; Harding, Paul; Kitaura, Francisco-Shu; Leauthaud, Alexie; Masters, Karen; McBride, Cameron K.; More, Surhud; Olmstead, Matthew D.; Oravetz, Daniel; Nuza, Sebastián E.; Pan, Kaike; Parejko, John; Pforr, Janine; Prada, Francisco; Rodríguez-Torres, Sergio; Salazar-Albornoz, Salvador; Samushia, Lado; Schneider, Donald P.; Scóccola, Claudia G.; Simmons, Audrey; Vargas-Magana, Mariana

    2016-01-01

    The Baryon Oscillation Spectroscopic Survey (BOSS), part of the Sloan Digital Sky Survey (SDSS) III project, has provided the largest survey of galaxy redshifts available to date, in terms of both the number of galaxy redshifts measured by a single survey, and the effective cosmological volume covered. Key to analysing the clustering of these data to provide cosmological measurements is understanding the detailed properties of this sample. Potential issues include variations in the target catalogue caused by changes either in the targeting algorithm or properties of the data used, the pattern of spectroscopic observations, the spatial distribution of targets for which redshifts were not obtained, and variations in the target sky density due to observational systematics. We document here the target selection algorithms used to create the galaxy samples that comprise BOSS. We also present the algorithms used to create large-scale structure catalogues for the final Data Release (DR12) samples and the associated random catalogues that quantify the survey mask. The algorithms are an evolution of those used by the BOSS team to construct catalogues from earlier data, and have been designed to accurately quantify the galaxy sample. The code used, designated MKSAMPLE, is released with this paper.

  17. Shape fluctuations of large unilamellar lipid vesicles observed by laser light scattering: influence of the small-scale structure.

    PubMed

    Brocca, Paola; Cantù, Laura; Corti, Mario; Del Favero, Elena; Motta, Simona

    2004-03-16

    In the present paper, we apply the dynamic laser light scattering technique to investigate the dependence of the characteristic times of thermally induced shape fluctuation of large unilamellar vesicles (LUVs) on bilayer composition. After addressing single-component LUVs made of two common phospholipids, dimyristoylphosphatidylcholine (DMPC) and dipalmitoylphosphatidylcholine (DPPC), we investigate the changes in vesicle shape fluctuation times due to the presence of cholesterol and gangliosides (GM1), added in small amounts. The experimental results show that the addition of a second component, even in small amount, to DMPC vesicles induces a change in membrane fluctuation times. Moreover, in the case of ganglioside addition, also the disposition of GM1 within the bilayer is of importance. Quite unexpectedly, the symmetric or asymmetric disposition of GM1 has opposite effects on bilayer dynamics, the first resulting in a "hardening" and the second in a "softening" of the membrane. Those results support that the small-scale structure of the bilayer is important in determining the overall dynamics of the vesicle. They also suggest that the physiological disposition of GM1 in the outer leaflet of real cells has a significative result in mechanical terms, positively affecting the dynamics of the membrane.

  18. On the recovery of ISW fluctuations using large-scale structure tracers and CMB temperature and polarization anisotropies

    NASA Astrophysics Data System (ADS)

    Bonavera, L.; Barreiro, R. B.; Marcos-Caballero, A.; Vielva, P.

    2016-06-01

    In this work we present a method to extract the signal induced by the integrated Sachs-Wolfe (ISW) effect in the cosmic microwave background (CMB). It makes use of the Linear Covariance-Based filter introduced by Barreiro et al., and combines CMB data with any number of large-scale structure (LSS) surveys and lensing information. It also exploits CMB polarization to reduce cosmic variance. The performance of the method has been thoroughly tested with simulations taking into account the impact of non-ideal conditions such as incomplete sky coverage or the presence of noise. In particular, three galaxy surveys are simulated, whose redshift distributions peak at low (z ≃ 0.3), intermediate (z ≃ 0.6) and high redshift (z ≃ 0.9). The contribution of each of the considered data sets as well as the effect of a mask and noise in the reconstructed ISW map is studied in detail. When combining all the considered data sets (CMB temperature and polarization, the three galaxy surveys and the lensing map), the proposed filter successfully reconstructs a map of the weak ISW signal, finding a perfect correlation with the input signal for the ideal case and around 80 per cent, on average, in the presence of noise and incomplete sky coverage. We find that including CMB polarization improves the correlation between input and reconstruction although only at a small level. Nonetheless, given the weakness of the ISW signal, even modest improvements can be of importance. In particular, in realistic situations, in which less information is available from the LSS tracers, the effect of including polarization is larger. For instance, for the case in which the ISW signal is recovered from CMB plus only one survey, and taking into account the presence of noise and incomplete sky coverage, the improvement in the correlation coefficient can be as large as 10 per cent.

  19. The SRG/eROSITA All-Sky Survey: A new era of large-scale structure studies with AGN

    NASA Astrophysics Data System (ADS)

    Kolodzig, Alexander; Gilfanov, Marat; Hütsi, Gert; Sunyaev, Rashid

    2015-08-01

    The four-year X-ray All-Sky Survey (eRASS) of the eROSITA telescope aboard the Spektrum-Roentgen-Gamma (SRG) satellite will detect about 3 million active galactic nuclei (AGN) with a median redshift of z~1 and typical luminosity of L0.5-2.0keV ~ 1044 erg/s. We demonstrate that this unprecedented AGN sample, complemented with redshift information, will supply us with outstanding opportunities for large-scale structure (LSS) studies.We show that with this sample of X-ray selected AGN, it will become possible for the first time to perform detailed redshift- and luminosity-resolved studies of the AGN clustering. This enable us to put strong constraints on different AGN triggering/fueling models as a function of AGN environment, which will dramatically improve our understanding of super-massive black hole growth and its correlation with the co-evolving LSS.Further, the eRASS AGN sample will become a powerful cosmological probe. We demonstrate for the first time that, given the breadth and depth of eRASS, it will become possible to convincingly detect baryonic acoustic oscillations (BAOs) with ~8σ confidence in the 0.8 < z < 2.0 range, currently uncovered by any existing BAO survey.Finally, we discuss the requirements for follow-up missions and demonstrate that in order to fully exploit the potential of the eRASS AGN sample, photometric and spectroscopic surveys of large areas and a sufficient depth will be needed.

  20. AGN and QSOs in the eROSITA All-Sky Survey. II. The large-scale structure

    NASA Astrophysics Data System (ADS)

    Kolodzig, Alexander; Gilfanov, Marat; Hütsi, Gert; Sunyaev, Rashid

    2013-10-01

    The four-year X-ray all-sky survey (eRASS) of the eROSITA telescope aboard the Spektrum-Roentgen-Gamma satellite will detect about 3 million active galactic nuclei (AGN) with a median redshift of z ≈ 1 and a typical luminosity of L0.5-2.0 keV ~ 1044 ergs-1. We show that this unprecedented AGN sample, complemented with redshift information, will supply us with outstanding opportunities for large-scale structure research. For the first time, detailed redshift- and luminosity-resolved studies of the bias factor for X-ray selected AGN will become possible. The eRASS AGN sample will not only improve the redshift- and luminosity resolution of these studies, but will also expand their luminosity range beyond L0.5-2.0 keV ~ 1044 ergs-1, thus enabling a direct comparison of the clustering properties of luminous X-ray AGN and optical quasars. These studies will dramatically improve our understanding of the AGN environment, triggering mechanisms, the growth of supermassive black holes and their co-evolution with dark matter halos. The eRASS AGN sample will become a powerful cosmological probe. It will enable detecting baryonic acoustic oscillations (BAOs) for the first time with X-ray selected AGN. With the data from the entire extragalactic sky, BAO will be detected at a ≳10σ confidence level in the full redshift range and with ~8σ confidence in the 0.8 < z < 2.0 range, which is currently not covered by any existing BAO surveys. To exploit the full potential of the eRASS AGN sample, photometric and spectroscopic surveys of large areas and a sufficient depth will be needed.

  1. Sensitivity analysis for large-scale problems

    NASA Technical Reports Server (NTRS)

    Noor, Ahmed K.; Whitworth, Sandra L.

    1987-01-01

    The development of efficient techniques for calculating sensitivity derivatives is studied. The objective is to present a computational procedure for calculating sensitivity derivatives as part of performing structural reanalysis for large-scale problems. The scope is limited to framed type structures. Both linear static analysis and free-vibration eigenvalue problems are considered.

  2. Survey on large scale system control methods

    NASA Technical Reports Server (NTRS)

    Mercadal, Mathieu

    1987-01-01

    The problem inherent to large scale systems such as power network, communication network and economic or ecological systems were studied. The increase in size and flexibility of future spacecraft has put those dynamical systems into the category of large scale systems, and tools specific to the class of large systems are being sought to design control systems that can guarantee more stability and better performance. Among several survey papers, reference was found to a thorough investigation on decentralized control methods. Especially helpful was the classification made of the different existing approaches to deal with large scale systems. A very similar classification is used, even though the papers surveyed are somehow different from the ones reviewed in other papers. Special attention is brought to the applicability of the existing methods to controlling large mechanical systems like large space structures. Some recent developments are added to this survey.

  3. Large-scale motions in the universe

    SciTech Connect

    Rubin, V.C.; Coyne, G.V.

    1988-01-01

    The present conference on the large-scale motions of the universe discusses topics on the problems of two-dimensional and three-dimensional structures, large-scale velocity fields, the motion of the local group, small-scale microwave fluctuations, ab initio and phenomenological theories, and properties of galaxies at high and low Z. Attention is given to the Pisces-Perseus supercluster, large-scale structure and motion traced by galaxy clusters, distances to galaxies in the field, the origin of the local flow of galaxies, the peculiar velocity field predicted by the distribution of IRAS galaxies, the effects of reionization on microwave background anisotropies, the theoretical implications of cosmological dipoles, and n-body simulations of universe dominated by cold dark matter.

  4. Using correlations between cosmic microwave background lensing and large-scale structure to measure primordial non-Gaussianity

    NASA Astrophysics Data System (ADS)

    Giannantonio, Tommaso; Percival, Will J.

    2014-06-01

    We apply a new method to measure primordial non-Gaussianity, using the cross-correlation between galaxy surveys and the cosmic microwave background (CMB) lensing signal to measure galaxy bias on very large scales, where local-type primordial non-Gaussianity predicts a k2 divergence. We use the CMB lensing map recently published by the Planck Collaboration, and measure its external correlations with a suite of six galaxy catalogues spanning a broad redshift range. We then consistently combine correlation functions to extend the recent analysis by Giannantonio et al., where the density-density and the density-CMB temperature correlations were used. Due to the intrinsic noise of the Planck lensing map, which affects the largest scales most severely, we find that the constraints on the galaxy bias are similar to the constraints from density-CMB temperature correlations. Including lensing constraints only improves the previous statistical measurement errors marginally, and we obtain fNL = 12 ± 21 (1σ) from the combined data set. However, the lensing measurements serve as an excellent test of systematic errors: we now have three methods to measure the large-scale, scale-dependent bias from a galaxy survey: auto-correlation, and cross-correlation with both CMB temperature and lensing. As the publicly available Planck lensing maps have had their largest scale modes at multipoles l < 10 removed, which are the most sensitive to the scale-dependent bias, we consider mock CMB lensing data covering all multipoles. We find that, while the effect of fNL indeed increases significantly on the largest scales, so do the contributions of both cosmic variance and the intrinsic lensing noise, so that the improvement is small.

  5. Lens-free laser nanopatterning of large-scale metal film areas with structured light for biosensing applications.

    PubMed

    Gurbatov, Stanislav; Kuchmizhak, Aleksandr; Vitrik, Oleg; Kulchin, Yuri

    2016-08-22

    Pulsed laser nanotexturing of metal films represents an ultra-fast, high-performance and cost-effective processing technology for fabrication of various functional surfaces widely used in plasmonics, biosensing, and photovoltaics. However, this approach usually requires high-NA lenses to focus a laser beam onto a few-micron spot as well as a micropositioning platform to move this spot along the sample surface, which increases the cost of the produced functional surfaces and limits the performance of laser-assisted nanotexturing techniques. In this paper we report on a laser-assisted technology for the fabrication of large-scale nanotextured metal substrates. In our approach, speckle-modulated patterns obtained by passing nanosecond laser pulses through the simplest diffusive object were utilized to cover a thin gold film with closely packed micron-sized structures - nanojets, nanobumps and through holes - previously reported only for single-shot nanoablation with tightly focused laser beams. The presented easy-to-implement technology, being one of the simplest of ever reported, since it requires neither focusing lenses nor micropositioning platforms, was shown to provide a way to pattern millimeter-size areas with the nano-sized jets at an average recording density of 35∙103 nanostructures per square millimeter and an average recording speed of 4.5·103 nanostructures per pulse. The fabricated nanotextured Au substrates were shown to yield spatially uniform surface-enhanced fluorescence signals from the Rhodamine 6G organic dye with an averaged 5.3-fold enhancement factor as compared with non-treated Au surface. PMID:27557171

  6. Structured approaches to large-scale systems: Variational integrators for interconnected Lagrange-Dirac systems and structured model reduction on Lie groups

    NASA Astrophysics Data System (ADS)

    Parks, Helen Frances

    This dissertation presents two projects related to the structured integration of large-scale mechanical systems. Structured integration uses the considerable differential geometric structure inherent in mechanical motion to inform the design of numerical integration schemes. This process improves the qualitative properties of simulations and becomes especially valuable as a measure of accuracy over long time simulations in which traditional Gronwall accuracy estimates lose their meaning. Often, structured integration schemes replicate continuous symmetries and their associated conservation laws at the discrete level. Such is the case for variational integrators, which discretely replicate the process of deriving equations of motion from variational principles. This results in the conservation of momenta associated to symmetries in the discrete system and conservation of a symplectic form when applicable. In the case of Lagrange-Dirac systems, variational integrators preserve a discrete analogue of the Dirac structure preserved in the continuous flow. In the first project of this thesis, we extend Dirac variational integrators to accommodate interconnected systems. We hope this work will find use in the fields of control, where a controlled system can be thought of as a "plant" system joined to its controller, and in the approach of very large systems, where modular modeling may prove easier than monolithically modeling the entire system. The second project of the thesis considers a different approach to large systems. Given a detailed model of the full system, can we reduce it to a more computationally efficient model without losing essential geometric structures in the system? Asked without the reference to structure, this is the essential question of the field of model reduction. The answer there has been a resounding yes, with Principal Orthogonal Decomposition (POD) with snapshots rising as one of the most successful methods. Our project builds on previous work

  7. 3-D imaging of large scale buried structure by 1-D inversion of very early time electromagnetic (VETEM) data

    USGS Publications Warehouse

    Aydmer, A.A.; Chew, W.C.; Cui, T.J.; Wright, D.L.; Smith, D.V.; Abraham, J.D.

    2001-01-01

    A simple and efficient method for large scale three-dimensional (3-D) subsurface imaging of inhomogeneous background is presented. One-dimensional (1-D) multifrequency distorted Born iterative method (DBIM) is employed in the inversion. Simulation results utilizing synthetic scattering data are given. Calibration of the very early time electromagnetic (VETEM) experimental waveforms is detailed along with major problems encountered in practice and their solutions. This discussion is followed by the results of a large scale application of the method to the experimental data provided by the VETEM system of the U.S. Geological Survey. The method is shown to have a computational complexity that is promising for on-site inversion.

  8. Large-Scale Fluid-Structure Interaction Simulation of Viscoplastic and Fracturing Thin Shells Subjected to Shocks and Detonations

    SciTech Connect

    Deiterding, Ralf

    2007-01-01

    The fluid-structure interaction simulation of shock- and detonation-loaded thin-walled structures requires numerical methods that can cope with large deformations as well as local topology changes. We present a robust level-set-based approach that integrates a Lagrangian thin-shell finite element solver with fracture and fragmentation capabilities and an Eulerian Cartesian fluid solver with optional dynamic mesh adaptation. As computational applications, we consider the plastic deformation of a copper plate impacted by a strong piston-induced pressure wave inside a water pipe and the induction of large plastic deformations and rupture of thin aluminum tubes due to the passage of ethylene-oxygen detonations.

  9. Using IBEX data to constrain the heliosphere's large-scale structure: interstellar neutral gas and the Warm Breeze

    NASA Astrophysics Data System (ADS)

    Bzowski, Maciej; McComas, David; Galli, Andre; Kucharek, Harald; Wurz, Peter; Sokol, Justyna M.; Schwadron, Nathan; Heirtzler, David M.; Kubiak, M. Marzena A.; Möbius, Eberhard; Fuselier, Stephen; Swaczyna, Paweł; Leonard, Trevor; Park, Jeewoo

    2016-07-01

    The large-scale structure of the heliosphere is governed by the interaction of the partly ionized, magnetized interstellar gas and the magnetized, fully ionized solar wind, structured in heliolatitude. Determining factors of this interaction are the density and flow velocity of interstellar gas relative to the Sun, the Mach number of this flow and the strength and inclination of the interstellar magnetic field to the flow vector at the interstellar side, and the magnitude of dynamic pressure of solar wind and the strength of its embedded magnetic field at the solar side. As a result of charge exchange interactions operating in the boundary region between the heliosphere and interstellar matter, a new population of neutral atoms is created, in addition to the population of unperturbed interstellar neutral gas. Both of these populations penetrate deep inside the heliosphere, where they can be sampled by the first space probe dedicated to observations of the heliosphere and its immediate surroundings by means of neutral atoms: the Interstellar Boundary Explorer (IBEX). Due to distortion of the heliosphere from axial symmetry, the secondary population of interstellar neutrals, created via charge exchange between the plasma flowing past the heliopause and the unperturbed pristine neutral interstellar gas, appears to be coming from a different direction than the unperturbed interstellar neutral flow. These two directions should be coplanar with the plane defined by the local interstellar magnetic field and the flow direction of the unperturbed gas. IBEX provides an unprecedented opportunity to study and interpret these relations. The IBEX science team have recently accomplished important milestones in researching the primary and secondary populations of interstellar gas and their relation to the local interstellar magnetic fields. First, the temperature and velocity vector of the inflowing interstellar neutral gas has been determined with unprecedented robustness based

  10. The large-scale structure of the halo of the Andromeda galaxy. I. Global stellar density, morphology and metallicity properties

    SciTech Connect

    Ibata, Rodrigo A.; Martin, Nicolas F.; Lewis, Geraint F.; McConnachie, Alan W.; Irwin, Michael J.; Ferguson, Annette M. N.; Bernard, Edouard J.; Peñarrubia, Jorge; Babul, Arif; Navarro, Julio; Chapman, Scott C.; Collins, Michelle; Fardal, Mark; Mackey, A. D.; Rich, R. Michael; Tanvir, Nial; Widrow, Lawrence

    2014-01-10

    We present an analysis of the large-scale structure of the halo of the Andromeda galaxy, based on the Pan-Andromeda Archeological Survey (PAndAS), currently the most complete map of resolved stellar populations in any galactic halo. Despite the presence of copious substructures, the global halo populations follow closely power-law profiles that become steeper with increasing metallicity. We divide the sample into stream-like populations and a smooth halo component (defined as the population that cannot be resolved into spatially distinct substructures with PAndAS). Fitting a three-dimensional halo model reveals that the most metal-poor populations ([Fe/H]<−1.7) are distributed approximately spherically (slightly prolate with ellipticity c/a = 1.09 ± 0.03), with only a relatively small fraction residing in discernible stream-like structures (f {sub stream} = 42%). The sphericity of the ancient smooth component strongly hints that the dark matter halo is also approximately spherical. More metal-rich populations contain higher fractions of stars in streams, with f {sub stream} becoming as high as 86% for [Fe/H]>−0.6. The space density of the smooth metal-poor component has a global power-law slope of γ = –3.08 ± 0.07, and a non-parametric fit shows that the slope remains nearly constant from 30 kpc to ∼300 kpc. The total stellar mass in the halo at distances beyond 2° is ∼1.1 × 10{sup 10} M {sub ☉}, while that of the smooth component is ∼3 × 10{sup 9} M {sub ☉}. Extrapolating into the inner galaxy, the total stellar mass of the smooth halo is plausibly ∼8 × 10{sup 9} M {sub ☉}. We detect a substantial metallicity gradient, which declines from ([Fe/H]) = –0.7 at R = 30 kpc to ([Fe/H]) = –1.5 at R = 150 kpc for the full sample, with the smooth halo being ∼0.2 dex more metal poor than the full sample at each radius. While qualitatively in line with expectations from cosmological simulations, these observations are of great importance as

  11. The Large-scale Structure of the Halo of the Andromeda Galaxy. I. Global Stellar Density, Morphology and Metallicity Properties

    NASA Astrophysics Data System (ADS)

    Ibata, Rodrigo A.; Lewis, Geraint F.; McConnachie, Alan W.; Martin, Nicolas F.; Irwin, Michael J.; Ferguson, Annette M. N.; Babul, Arif; Bernard, Edouard J.; Chapman, Scott C.; Collins, Michelle; Fardal, Mark; Mackey, A. D.; Navarro, Julio; Peñarrubia, Jorge; Rich, R. Michael; Tanvir, Nial; Widrow, Lawrence

    2014-01-01

    We present an analysis of the large-scale structure of the halo of the Andromeda galaxy, based on the Pan-Andromeda Archeological Survey (PAndAS), currently the most complete map of resolved stellar populations in any galactic halo. Despite the presence of copious substructures, the global halo populations follow closely power-law profiles that become steeper with increasing metallicity. We divide the sample into stream-like populations and a smooth halo component (defined as the population that cannot be resolved into spatially distinct substructures with PAndAS). Fitting a three-dimensional halo model reveals that the most metal-poor populations ([{{Fe/H}] \\lt -1.7}) are distributed approximately spherically (slightly prolate with ellipticity c/a = 1.09 ± 0.03), with only a relatively small fraction residing in discernible stream-like structures (f stream = 42%). The sphericity of the ancient smooth component strongly hints that the dark matter halo is also approximately spherical. More metal-rich populations contain higher fractions of stars in streams, with f stream becoming as high as 86% for [{Fe/H] \\gt -0.6}. The space density of the smooth metal-poor component has a global power-law slope of γ = -3.08 ± 0.07, and a non-parametric fit shows that the slope remains nearly constant from 30 kpc to ~300 kpc. The total stellar mass in the halo at distances beyond 2° is ~1.1 × 1010 M ⊙, while that of the smooth component is ~3 × 109 M ⊙. Extrapolating into the inner galaxy, the total stellar mass of the smooth halo is plausibly ~8 × 109 M ⊙. We detect a substantial metallicity gradient, which declines from lang[Fe/H]rang = -0.7 at R = 30 kpc to lang[Fe/H]rang = -1.5 at R = 150 kpc for the full sample, with the smooth halo being ~0.2 dex more metal poor than the full sample at each radius. While qualitatively in line with expectations from cosmological simulations, these observations are of great importance as they provide a prototype template that

  12. The latent structure of loneliness: testing competing factor models of the UCLA Loneliness Scale in a large adolescent sample.

    PubMed

    Shevlin, Mark; Murphy, Siobhan; Murphy, Jamie

    2015-04-01

    This study assessed the dimensional structure of the UCLA Loneliness Scale ([UCLA-LS], UCLA-3). Data from the Northern Ireland Young Life and Times Survey (2011), a survey of 1,434 16-year-olds, was used to examine the underlying factor structure of the scale. Confirmatory factor analysis was employed to compare alternative factor analytical models that can inform the scoring of the measure and determine the degree to which different factors provided unique predictive utility. Fit statistics indicated that the best fitting model comprised three correlated factors: Isolation, Related Connectedness, and Collective Connectedness. These findings were consistent with previous findings that identified the multidimensional nature of the UCLA-LS. The study also found evidence that the subscales were differentially associated with psychiatric morbidity as measured by the General Health Questionnaire (GHQ-12) and provides a more reliable and comprehensive framework to assess the clinical significance of loneliness.

  13. Capability for aerothermal-structural tests of large-to-full-scale components of future space transportation systems

    NASA Technical Reports Server (NTRS)

    Couch, L. M.; Wieting, A. R.

    1979-01-01

    The design of viable, low-mass thermostructural concepts for future space transportation systems requires accurate definition of the localized heat flux, pressures, and flow-surface interaction parameters for complex flow regions of detailed areas of large vehicles, such as wing-elevon coves, thermal protection system tile gaps, and corrugated metallic surfaces. This paper discusses investigations recently conducted in and planned for two high-energy wind tunnels at the Langley Research Center - the 8-foot High-temperatures Tunnel and the Thermal Protection System Test Facility. The data obtained on large-to-full-scale vehicle components, comparisons of the experimental data with theory, and the large, reusable, generalized test apparatus available at or planned for these facilities are discussed.

  14. Large scale cluster computing workshop

    SciTech Connect

    Dane Skow; Alan Silverman

    2002-12-23

    Recent revolutions in computer hardware and software technologies have paved the way for the large-scale deployment of clusters of commodity computers to address problems heretofore the domain of tightly coupled SMP processors. Near term projects within High Energy Physics and other computing communities will deploy clusters of scale 1000s of processors and be used by 100s to 1000s of independent users. This will expand the reach in both dimensions by an order of magnitude from the current successful production facilities. The goals of this workshop were: (1) to determine what tools exist which can scale up to the cluster sizes foreseen for the next generation of HENP experiments (several thousand nodes) and by implication to identify areas where some investment of money or effort is likely to be needed. (2) To compare and record experimences gained with such tools. (3) To produce a practical guide to all stages of planning, installing, building and operating a large computing cluster in HENP. (4) To identify and connect groups with similar interest within HENP and the larger clustering community.

  15. Large scale phononic metamaterials for seismic isolation

    SciTech Connect

    Aravantinos-Zafiris, N.; Sigalas, M. M.

    2015-08-14

    In this work, we numerically examine structures that could be characterized as large scale phononic metamaterials. These novel structures could have band gaps in the frequency spectrum of seismic waves when their dimensions are chosen appropriately, thus raising the belief that they could be serious candidates for seismic isolation structures. Different and easy to fabricate structures were examined made from construction materials such as concrete and steel. The well-known finite difference time domain method is used in our calculations in order to calculate the band structures of the proposed metamaterials.

  16. The Relationship of MJO Convective Onset to Large-Scale Upper-Tropospheric Dynamic and Thermodynamic Structures

    NASA Astrophysics Data System (ADS)

    Powell, S.; Houze, R.

    2014-12-01

    ERA-Interim reanalysis reveals large-scale (LS) fields of anomalous upper-tropospheric divergence and associated vertical motion that are detectable as early as mid-September 2011 over the Indian Ocean during DYNAMO/AMIE. The LS anomalous motions circumnavigate the globe several times, and the arrival of 150 hPa divergence anomalies and 300 hPa upward motion anomalies coincides with onset of widespread, deep, mesoscale convection over the Indian Ocean. Such motions are linked to at least four, and possibly five, separate MJO events between October 2011 and March 2012. Convergence is present at 150 to 300 hPa during convectively suppressed periods over the central Indian Ocean, and it is associated with subsidence above 500 hPa that at times exceeds the expected downward motion response to clear-sky radiative cooling. At Gan Island, the LS upward motion anomaly arrives as much as 2 days prior to onset of a LS convective event. Divergence anomalies appear within a day of the upward motion anomalies. Positive temperature anomalies arrive prior to the arrival of LS divergence aloft, indicating that the temperature anomalies do not destabilize the troposphere prior to MJO convective onset. We show further that changes in relative humidity at 300 hPa are strongly (weakly) influenced by changes in specific humidity (temperature). The anomalous vertical motions may influence the specific humidity variability. LS convective events can develop after LS subsidence moves out of the Indian Ocean as follows: Subsidence suppresses convection through drying, and convection flourishes when the subsidence propagates out of the area. Model simulations in a latitudinally wide WRF channel can replicate some of the LS structures of eastward propgating divergence and vertical motion even if domain boundaries are located in mid-latitudes; however such signals appear only during the October case. Modeled LS vertical motion and divergence is illustrated using a variety of boundary

  17. On the topologic structure of economic complex networks: Empirical evidence from large scale payment network of Estonia

    NASA Astrophysics Data System (ADS)

    Rendón de la Torre, Stephanie; Kalda, Jaan; Kitt, Robert; Engelbrecht, Jüri

    2016-09-01

    This paper presents the first topological analysis of the economic structure of an entire country based on payments data obtained from Swedbank. This data set is exclusive in its kind because around 80% of Estonia's bank transactions are done through Swedbank, hence, the economic structure of the country can be reconstructed. Scale-free networks are commonly observed in a wide array of different contexts such as nature and society. In this paper, the nodes are comprised by customers of the bank (legal entities) and the links are established by payments between these nodes. We study the scaling-free and structural properties of this network. We also describe its topology, components and behaviors. We show that this network shares typical structural characteristics known in other complex networks: degree distributions follow a power law, low clustering coefficient and low average shortest path length. We identify the key nodes of the network and perform simulations of resiliency against random and targeted attacks of the nodes with two different approaches. With this, we find that by identifying and studying the links between the nodes is possible to perform vulnerability analysis of the Estonian economy with respect to economic shocks.

  18. Gyrodampers for large space structures

    NASA Technical Reports Server (NTRS)

    Aubrun, J. N.; Margulies, G.

    1979-01-01

    The problem of controlling the vibrations of a large space structures by the use of actively augmented damping devices distributed throughout the structure is addressed. The gyrodamper which consists of a set of single gimbal control moment gyros which are actively controlled to extract the structural vibratory energy through the local rotational deformations of the structure, is described and analyzed. Various linear and nonlinear dynamic simulations of gyrodamped beams are shown, including results on self-induced vibrations due to sensor noise and rotor imbalance. The complete nonlinear dynamic equations are included. The problem of designing and sizing a system of gyrodampers for a given structure, or extrapolating results for one gyrodamped structure to another is solved in terms of scaling laws. Novel scaling laws for gyro systems are derived, based upon fundamental physical principles, and various examples are given.

  19. Fractal structure of large-scale variability of wind-driven waves according to laser-scanning data.

    PubMed

    Zosimov, V. V.; Naugol'nykh, K. A.

    1994-03-01

    Results are presented for experimental laser-scanning investigations of the statistical characteristics of wind-driven ocean waves. The method involves counting the number of specular points during scanning of the sea surface by a narrow laser beam on a moving ship. The data analyzed are the set of specular points recorded along a track traced out by the laser beam as a result of the motion of the ship and the scanning beam. A prominent feature is the large-scale variability of the number of specular points and the self-similar nature of the process over a rather wide range of spatial scales. A fractal analysis of the process shows a clear power-law interval in the spatial spectrum of the distribution of specular points.

  20. The technicolor "big picture" of black hole evolution: Multiwavelength views of AGN, galaxies, and large-scale structures

    NASA Astrophysics Data System (ADS)

    Hickox, Ryan C.

    2016-08-01

    Large multiwavelength extragalactic surveys have revolutionized our understanding of the cosmic evolution of supermassive black holes (SMBHs). I will discuss recent results on the host galaxies and clustering of AGN selected using a range of techniques from the radio to the hard X-ray wavebands, including data from the NuSTAR and WISE space observatories. I will show that relatively small dark matter halos hosting star-forming galaxies are connected with rapid but highly variable black hole growth that is often heavily obscured. In contrast, massive halos hosting passive galaxies are associated with slower, mechanically-dominated modes of black hole growth. I will conclude by discussing new analysis techniques for measuring AGN clustering and look to the future of large-scale extragalactic surveys.