Temporal genetic structure in a poecilogonous polychaete: the interplay of developmental mode and environmental stochasticity.

PubMed

Kesäniemi, Jenni E; Mustonen, Marina; Boström, Christoffer; Hansen, Benni W; Knott, K Emily

2014-01-22

Temporal variation in the genetic structure of populations can be caused by multiple factors, including natural selection, stochastic environmental variation, migration, or genetic drift. In benthic marine species, the developmental mode of larvae may indicate a possibility for temporal genetic variation: species with dispersive planktonic larvae are expected to be more likely to show temporal genetic variation than species with benthic or brooded non-dispersive larvae, due to differences in larval mortality and dispersal ability. We examined temporal genetic structure in populations of Pygospio elegans, a poecilogonous polychaete with within-species variation in developmental mode. P. elegans produces either planktonic, benthic, or intermediate larvae, varying both among and within populations, providing a within-species test of the generality of a relationship between temporal genetic variation and larval developmental mode. In contrast to our expectations, our microsatellite analyses of P. elegans revealed temporal genetic stability in the UK population with planktonic larvae, whereas there was variation indicative of drift in temporal samples of the populations from the Baltic Sea, which have predominantly benthic and intermediate larvae. We also detected temporal variation in relatedness within these populations. A large temporal shift in genetic structure was detected in a population from the Netherlands, having multiple developmental modes. This shift could have been caused by local extiction due to extreme environmental conditions and (re)colonization by planktonic larvae from neighboring populations. In our study of P. elegans, temporal genetic variation appears to be due to not only larval developmental mode, but also the stochastic environment of adults. Large temporal genetic shifts may be more likely in marine intertidal habitats (e.g. North Sea and Wadden Sea) which are more prone to environmental stochasticity than the sub-tidal Baltic habitats. Sub-tidal and/or brackish (less saline) habitats may support smaller P. elegans populations and these may be more susceptible to the effects of random genetic drift. Moreover, higher frequencies of asexual reproduction and the benthic larval developmental mode in these populations leads to higher relatedness and contributes to drift. Our results indicate that a general relationship between larval developmental mode and temporal genetic variation may not exist.

Cryogenic Calcite: A Morphologic and Isotopic Analog to the ALH84001 Carbonates

NASA Technical Reports Server (NTRS)

Niles, P. B.; Leshin, L. A.; Socki, R. A.; Guan, Y.; Ming, D. W.; Gibson, E. K.

2004-01-01

Martian meteorite ALH84001 carbonates preserve large and variable microscale isotopic compositions, which in some way reflect their formation environment. These measurements show large variations (>20%) in the carbon and oxygen isotopic compositions of the carbonates on a 10-20 micron scale that are correlated with chemical composition. However, the utilization of these data sets for interpreting the formation conditions of the carbonates is complex due to lack of suitable terrestrial analogs and the difficulty of modeling under non-equilibrium conditions. Thus, the mechanisms and processes are largely unknown that create and preserve large microscale isotopic variations in carbonate minerals. Experimental tests of the possible environments and mechanisms that lead to large microscale isotopic variations can help address these concerns. One possible mechanism for creating large carbon isotopic variations in carbonates involves the freezing of water. Carbonates precipitate during extensive CO2 degassing that occurs during the freezing process as the fluid s decreasing volume drives CO2 out. This rapid CO2 degassing results in a kinetic isotopic fractionation where the CO2 gas has a much lighter isotopic composition causing an enrichment of 13C in the remaining dissolved bicarbonate. This study seeks to determine the suitability of cryogenically formed carbonates as analogs to ALH84001 carbonates. Specifically, our objective is to determine how accurately models using equilibrium fractionation factors approximate the isotopic compositions of cryogenically precipitated carbonates. This includes determining the accuracy of applying equilibrium fractionation factors during a kinetic process, and determining how isotopic variations in the fluid are preserved in microscale variations in the precipitated carbonates.

Modulation of ENA in the heliosphere

NASA Astrophysics Data System (ADS)

Bzowski, Maciej; Kubiak, Marzena; Czechowski, Andrzej

Energetic Neutral Atoms (ENA), an important part of heliospheric physics, have recently en-joyed an increased interest because of the breakthrough observations by the NASA SMEX mission IBEX. Generally, ENA appear as a product of charge exchange reaction between an energetic ion and a neutral gas atom. Being insensitive to electromagnetic forces, ENA run away freely from their birth sites and can carry information on the physical state of the parent plasma on (somewhat energy-dependent) distances well in excess of 100 AU. The ENA fluxes exhibit modulation due to time variations of their source function due to modulation of solar wind on time scales from days to solar cycle and due to large-scale variation in the latitude structure of the solar wind, as well as to the variations in the loss rate due to re-ionization. Once created, the ENA flux suffers losses mostly due to photoionization by solar EUV photons, but also to charge exchange and electron impact. We will review the variation of survival prob-ability of the ENA created in the inner heliosheath and observed by spacecraft on Mars, Earth, and Venus orbits (like Mars Express, IBEX, and Venus Express) and solar-cycle modulation of the radially-expanding spectral flux of ENA consisting of the solar wind protons and alpha particles transcharged on the neutral interstellar gas inside the heliosphere.

HCMM Heat Capacity Mapping Mission

NASA Technical Reports Server (NTRS)

Jackson, R. D. (Principal Investigator)

1978-01-01

The author has identified the following significant results. Thermal imagery shows a large temperature variation over the 640 acre experimental site. The variation is due to the slope and aspect of the terrain as well as the aircraft flight direction (east-west versus north-south). In spite of these individual temperature differences, mean temperature values from 40 to 640 acre blocks are essentially identical regardless of aircraft flight direction.

Ocean Bottom Pressure Variation Associated with the Large Meander of the Kuroshio South of Japan in 2004-2005

NASA Astrophysics Data System (ADS)

Nagano, A.; Hasegawa, T.; Matsumoto, H.; Ariyoshi, K.

2016-02-01

The Kuroshio, the western boundary current of the North Pacific subtropical gyre, takes a stable meandering path off the southern coast of Japan, called the large meander (LM), on interannual to decadal timescales. The LM of the Kuroshio formed in July 2004 associated with the intensified anticyclonic recirculation gyre south of the Kuroshio, and gradually decayed in the latter half of 2005. The variations of the Kuroshio and the southern recirculating currents may be related to deep currents, which are expected to be associated with bottom pressure (BP) variation. In order to examine the variation of BP associated with the variations of the sea surface currents, we analyzed data of eleven pressure sensors equipped to inverted echo sounders deployed from July 2004 to October 2006. An abrupt enhancement of BP is found on the continental slope off Shikoku, lagging a few months behind an elevation of sea surface height (SSH) due to the onshore shift of the recirculation gyre associated with the LM formation. Subsequently, BP beneath the recirculation gyre dwindles, leading the gradual depression of SSH due to the decay of the LM. The relationship between BP and SSH may suggest that the occurrence and decay of the LM depend on the extension of the recirculation gyre current down to the ocean bottom.

Testing Peer Effects among College Students: Evidence from an Unusual Admission Policy Change in China

ERIC Educational Resources Information Center

Lu, Fangwen

2014-01-01

This paper studies a natural experiment due to an unusual change in the college admission policy at a Chinese university, which brought a large number of low-score students into several academic departments in the university. Exploiting large variations in peer characteristics and strong interactions among peer groups, the analysis finds that…

Patterns of genome size variation in snapping shrimp.

PubMed

Jeffery, Nicholas W; Hultgren, Kristin; Chak, Solomon Tin Chi; Gregory, T Ryan; Rubenstein, Dustin R

2016-06-01

Although crustaceans vary extensively in genome size, little is known about how genome size may affect the ecology and evolution of species in this diverse group, in part due to the lack of large genome size datasets. Here we investigate interspecific, intraspecific, and intracolony variation in genome size in 39 species of Synalpheus shrimps, representing one of the largest genome size datasets for a single genus within crustaceans. We find that genome size ranges approximately 4-fold across Synalpheus with little phylogenetic signal, and is not related to body size. In a subset of these species, genome size is related to chromosome size, but not to chromosome number, suggesting that despite large genomes, these species are not polyploid. Interestingly, there appears to be 35% intraspecific genome size variation in Synalpheus idios among geographic regions, and up to 30% variation in Synalpheus duffyi genome size within the same colony.

Potential of Sr isotopic analysis in ceramic provenance studies: Characterisation of Chinese stonewares

NASA Astrophysics Data System (ADS)

Li, Bao-Ping; Zhao, Jian-Xin; Greig, Alan; Collerson, Kenneth D.; Zhuo, Zhen-Xi; Feng, Yue-Xin

2005-11-01

We compare the trace element and Sr isotopic compositions of stoneware bodies made in Yaozhou and Jizhou to characterise these Chinese archaeological ceramics and examine the potential of Sr isotopes in provenance studies. Element concentrations determined by ICP-MS achieve distinct characterisation for Jizhou samples due to their restricted variation, yet had limited success with Yaozhou wares because of their large variability. In contrast, 87Sr/86Sr ratios in Yaozhou samples have a very small variation and are all significantly lower than those of Jizhou samples, which show a large variation and cannot be well characterised with Sr isotopes. Geochemical interpretation reveals that 87Sr/86Sr ratios will have greater potential to characterise ceramics made of low Rb/Sr materials such as kaolin clay, yet will show larger variations in ceramics made of high Rb/Sr materials such as porcelain stone.

Genetic interactions contribute less than additive effects to quantitative trait variation in yeast

PubMed Central

Bloom, Joshua S.; Kotenko, Iulia; Sadhu, Meru J.; Treusch, Sebastian; Albert, Frank W.; Kruglyak, Leonid

2015-01-01

Genetic mapping studies of quantitative traits typically focus on detecting loci that contribute additively to trait variation. Genetic interactions are often proposed as a contributing factor to trait variation, but the relative contribution of interactions to trait variation is a subject of debate. Here we use a very large cross between two yeast strains to accurately estimate the fraction of phenotypic variance due to pairwise QTL–QTL interactions for 20 quantitative traits. We find that this fraction is 9% on average, substantially less than the contribution of additive QTL (43%). Statistically significant QTL–QTL pairs typically have small individual effect sizes, but collectively explain 40% of the pairwise interaction variance. We show that pairwise interaction variance is largely explained by pairs of loci at least one of which has a significant additive effect. These results refine our understanding of the genetic architecture of quantitative traits and help guide future mapping studies. PMID:26537231

Habitat degradation and fishing effects on the size structure of coral reef fish communities.

PubMed

Wilson, S K; Fisher, R; Pratchett, M S; Graham, N A J; Dulvy, N K; Turner, R A; Cakacaka, A; Polunin, N V C

2010-03-01

Overfishing and habitat degradation through climate change pose the greatest threats to sustainability of marine resources on coral reefs. We examined how changes in fishing pressure and benthic habitat composition influenced the size spectra of island-scale reef fish communities in Lau, Fiji. Between 2000 and 2006 fishing pressure declined in the Lau Islands due to declining human populations and reduced demand for fresh fish. At the same time, coral cover declined and fine-scale architectural complexity eroded due to coral bleaching and outbreaks of crown-of-thorns starfish, Acanthaster planci. We examined the size distribution of reef fish communities using size spectra analysis, the linearized relationship between abundance and body size class. Spatial variation in fishing pressure accounted for 31% of the variation in the slope of the size spectra in 2000, higher fishing pressure being associated with a steeper slope, which is indicative of fewer large-bodied fish and/or more small-bodied fish. Conversely, in 2006 spatial variation in habitat explained 53% of the variation in the size spectra slopes, and the relationship with fishing pressure was much weaker (approximately 12% of variation) than in 2000. Reduced cover of corals and lower structural complexity was associated with less steep size spectra slopes, primarily due to reduced abundance of fish < 20 cm. Habitat degradation will compound effects of fishing on coral reefs as increased fishing reduces large-bodied target species, while habitat loss results in fewer small-bodied juveniles and prey that replenish stocks and provide dietary resources for predatory target species. Effective management of reef resources therefore depends on both reducing fishing pressure and maintaining processes that encourage rapid recovery of coral habitat.

Genetic variation of apolipoproteins, diet and other environmental interactions; an updated review.

PubMed

Sotos-Prieto, Mercedes; Peñalvo, José Luis

2013-01-01

This paper summarizes the recent findings from studies investigating the potential environmental modulation of the genetic variation of apolipoprotein genes on metabolic traits. We reviewed nutrigenetic studies evaluating variations on apolipoproteins-related genes and its associated response to nutrients (mostly dietary fatty acids) or any other dietary or environmental component. Most revised research studied single nucleotide polymorphism (SNP) and specific nutrients through small intervention studies, and only few interactions have been replicated in large and independent populations (as in the case of -265T > C SNP in APOA2 gene). Although current knowledge shows that variations on apolipoprotein genes may contribute to the different response on metabolic traits due to dietary interventions, evidence is still scarce and results are inconsistent. Success in this area will require going beyond the limitations of current experimental designs and explore the hypotheses within large populations. Some of these limitations are being covered by the rapidly advance in high-throughput technologies and large scale-genome wide association studies. Copyright © AULA MEDICA EDICIONES 2013. Published by AULA MEDICA. All rights reserved.

Application and theoretical analysis of the flamelet model for supersonic turbulent combustion flows in the scramjet engine

NASA Astrophysics Data System (ADS)

Gao, Zhenxun; Wang, Jingying; Jiang, Chongwen; Lee, Chunhian

2014-11-01

In the framework of Reynolds-averaged Navier-Stokes simulation, supersonic turbulent combustion flows at the German Aerospace Centre (DLR) combustor and Japan Aerospace Exploration Agency (JAXA) integrated scramjet engine are numerically simulated using the flamelet model. Based on the DLR combustor case, theoretical analysis and numerical experiments conclude that: the finite rate model only implicitly considers the large-scale turbulent effect and, due to the lack of the small-scale non-equilibrium effect, it would overshoot the peak temperature compared to the flamelet model in general. Furthermore, high-Mach-number compressibility affects the flamelet model mainly through two ways: the spatial pressure variation and the static enthalpy variation due to the kinetic energy. In the flamelet library, the mass fractions of the intermediate species, e.g. OH, are more sensible to the above two effects than the main species such as H2O. Additionally, in the combustion flowfield where the pressure is larger than the value adopted in the generation of the flamelet library or the conversion from the static enthalpy to the kinetic energy occurs, the temperature obtained by the flamelet model without taking compressibility effects into account would be undershot, and vice versa. The static enthalpy variation effect has only little influence on the temperature simulation of the flamelet model, while the effect of the spatial pressure variation may cause relatively large errors. From the JAXA case, it is found that the flamelet model cannot in general be used for an integrated scramjet engine. The existence of the inlet together with the transverse injection scheme could cause large spatial variations of pressure, so the pressure value adopted for the generation of a flamelet library should be fine-tuned according to a pre-simulation of pure mixing.

The micro-environmental impact of volatile organic compound emissions from large-scale assemblies of people in a confined space

USDA-ARS?s Scientific Manuscript database

Large-scale assemblies of people in a con'ned space can exert signi'cant impacts on the local air chemistry due to human emissions of volatile organics. Variations of air-quality in such small scale can be studied by quantifying 'ngerprint volatile organic compounds (VOCs) such as acetone, toluene, ...

Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history.

PubMed Central

Hoelzel, A Rus; Natoli, Ada; Dahlheim, Marilyn E; Olavarria, Carlos; Baird, Robin W; Black, Nancy A

2002-01-01

A low level of genetic variation in mammalian populations where the census population size is relatively large has been attributed to various factors, such as a naturally small effective population size, historical bottlenecks and social behaviour. The killer whale (Orcinus orca) is an abundant, highly social species with reduced genetic variation. We find no consistent geographical pattern of global diversity and no mtDNA variation within some regional populations. The regional lack of variation is likely to be due to the strict matrilineal expansion of local populations. The worldwide pattern and paucity of diversity may indicate a historical bottleneck as an additional factor. PMID:12137576

Are the traditional large-scale drought indices suitable for shallow water wetlands? An example in the Everglades.

PubMed

Zhao, Dehua; Wang, Penghe; Zuo, Jie; Zhang, Hui; An, Shuqing; Ramesh, Reddy K

2017-08-01

Numerous drought indices have been developed over the past several decades. However, few studies have focused on the suitability of indices for studies of ephemeral wetlands. The objective is to answer the following question: can the traditional large-scale drought indices characterize drought severity in shallow water wetlands such as the Everglades? The question was approached from two perspectives: the available water quantity and the response of wetland ecosystems to drought. The results showed the unsuitability of traditional large-scale drought indices for characterizing the actual available water quantity based on two findings. (1) Large spatial variations in precipitation (P), potential evapotranspiration (PE), water table depth (WTD) and the monthly water storage change (SC) were observed in the Everglades; notably, the spatial variation in SC, which reflects the monthly water balance, was 1.86 and 1.62 times larger than the temporal variation between seasons and between years, respectively. (2) The large-scale water balance measured based on the water storage variation had an average indicating efficiency (IE) of only 60.01% due to the redistribution of interior water. The spatial distribution of variations in the Normalized Different Vegetation Index (NDVI) in the 2011 dry season showed significantly positive, significantly negative and weak correlations with the minimum WTD in wet prairies, graminoid prairies and sawgrass wetlands, respectively. The significant and opposite correlations imply the unsuitability of the traditional large-scale drought indices in evaluating the effect of drought on shallow water wetlands. Copyright © 2017 Elsevier Ltd. All rights reserved.

Hysteresis-Free Carbon Nanotube Field-Effect Transistors.

PubMed

Park, Rebecca S; Hills, Gage; Sohn, Joon; Mitra, Subhasish; Shulaker, Max M; Wong, H-S Philip

2017-05-23

While carbon nanotube (CNT) field-effect transistors (CNFETs) promise high-performance and energy-efficient digital systems, large hysteresis degrades these potential CNFET benefits. As hysteresis is caused by traps surrounding the CNTs, previous works have shown that clean interfaces that are free of traps are important to minimize hysteresis. Our previous findings on the sources and physics of hysteresis in CNFETs enabled us to understand the influence of gate dielectric scaling on hysteresis. To begin with, we validate through simulations how scaling the gate dielectric thickness results in greater-than-expected benefits in reducing hysteresis. Leveraging this insight, we experimentally demonstrate reducing hysteresis to <0.5% of the gate-source voltage sweep range using a very large-scale integration compatible and solid-state technology, simply by fabricating CNFETs with a thin effective oxide thickness of 1.6 nm. However, even with negligible hysteresis, large subthreshold swing is still observed in the CNFETs with multiple CNTs per transistor. We show that the cause of large subthreshold swing is due to threshold voltage variation between individual CNTs. We also show that the source of this threshold voltage variation is not explained solely by variations in CNT diameters (as is often ascribed). Rather, other factors unrelated to the CNTs themselves (i.e., process variations, random fixed charges at interfaces) are a significant factor in CNT threshold voltage variations and thus need to be further improved.

Physics based model of D-region variability related to VLF propagation effects

NASA Astrophysics Data System (ADS)

Chakravarty, S. C.

2012-07-01

D-region (~60-85 km) electron density profiles measured using large number of sounding rocket experiments carried out from two Indian low latitude stations show large variations with solar zenith angle, season and solar activity. Similarly the ground based multi frequency radio wave absorption technique has provided continuous data on the morphology of the hourly electron density variations. However suitable models of the D-region electron density profile variations both during quiet and disturbed solar conditions over the Indian region are lacking. The renewed interest in the study of the VLF/LF propagation anomalies taking place through perturbations in the D-region electron densities due to various geophysical phenomena requires the availability of a baseline D-region model over low latitudes. The purpose of this paper is to critically review the physical processes of D-region production and loss of free electrons, dynamical coupling due to variety of vertically propagating atmospheric waves, sudden changes brought about by the solar energetic events like CMEs and different categories of X-ray flares. Low latitude region is not likely to be affected by the PMSE or PCA type of events but the changes due to lightning induced mesospheric red sprites and LEPs need to be considered. Based on this analysis, a preliminary low latitude D-region electron density profile model development is proposed. Sample results would illustrate key requirements from such a model in terms of its effectiveness to simulate the low latitude observations of VLF/LF amplitude and phase variations using waveguide propagation models like LWPC.

Mandibular ramus shape of Australopithecus sediba suggests a single variable species.

PubMed

Ritzman, Terrence B; Terhune, Claire E; Gunz, Philipp; Robinson, Chris A

2016-11-01

The fossils from Malapa cave, South Africa, attributed to Australopithecus sediba, include two partial skeletons-MH1, a subadult, and MH2, an adult. Previous research noted differences in the mandibular rami of these individuals. This study tests three hypotheses that could explain these differences. The first two state that the differences are due to ontogenetic variation and sexual dimorphism, respectively. The third hypothesis, which is relevant to arguments suggesting that MH1 belongs in the genus Australopithecus and MH2 in Homo, is that the differences are due to the two individuals representing more than one taxon. To test these hypotheses, we digitized two-dimensional sliding semilandmarks in samples of Gorilla, Pan, Pongo, and Homo, as well as MH1 and MH2. We document large amounts of shape variation within all extant species, which is related neither to ontogeny nor sexual dimorphism. Extant species nevertheless form clusters in shape space, albeit with some overlap. The shape differences in extant taxa between individuals in the relevant age categories are minimal, indicating that it is unlikely that ontogeny explains the differences between MH1 and MH2. Similarly, the pattern of differences between MH1 and MH2 is inconsistent with those found between males and females in the extant sample, suggesting that it is unlikely that sexual dimorphism explains these differences. While the difference between MH1 and MH2 is large relative to within-species comparisons, it does not generally fall outside of the confidence intervals for extant intraspecific variation. However, the MH1-MH2 distance also does not plot outside and below the between-species confidence intervals. Based on these results, as well as the contextual and depositional evidence, we conclude that MH1 and MH2 represent a single species and that the relatively large degree of variation in this species is due to neither ontogeny nor sexual dimorphism. Copyright © 2016 Elsevier Ltd. All rights reserved.

Heritability of metabolic syndrome traits in a large population-based sample[S

PubMed Central

van Dongen, Jenny; Willemsen, Gonneke; Chen, Wei-Min; de Geus, Eco J. C.; Boomsma, Dorret I.

2013-01-01

Heritability estimates of metabolic syndrome traits vary widely across studies. Some studies have suggested that the contribution of genes may vary with age or sex. We estimated the heritability of 11 metabolic syndrome-related traits and height as a function of age and sex in a large population-based sample of twin families (N = 2,792–27,021, for different traits). A moderate-to-high heritability was found for all traits [from H2 = 0.47 (insulin) to H2 = 0.78 (BMI)]. The broad-sense heritability (H2) showed little variation between age groups in women; it differed somewhat more in men (e.g., for glucose, H2 = 0.61 in young females, H2 = 0.56 in older females, H2 = 0.64 in young males, and H2= 0.27 in older males). While nonadditive genetic effects explained little variation in the younger subjects, nonadditive genetic effects became more important at a greater age. Our findings show that in an unselected sample (age range, ∼18–98 years), the genetic contribution to individual differences in metabolic syndrome traits is moderate to large in both sexes and across age. Although the prevalence of the metabolic syndrome has greatly increased in the past decades due to lifestyle changes, our study indicates that most of the variation in metabolic syndrome traits between individuals is due to genetic differences. PMID:23918046

A Model of the Temporal Variability of Optical Light from Extrasolar Terrestrial Planets

NASA Astrophysics Data System (ADS)

Ford, E. B.; Seager, S.; Turner, E. L.

2001-05-01

New observatories such as TPF (NASA) and Darwin (ESA) are being designed to detect light directly from terrestrial-mass planets. Such observations will provide new data to constrain theories of planet formation and may identify the possible presence of liquid water and even spectroscopic signatures suggestive of life. We model the light scattered by Earth-like planets focusing on temporal variability due to planetary rotation and weather. Since a majority of the scattered light comes from only a small fraction of the planet's surface, significant variations in brightness are possible. The variations can be as large as a factor of two for a cloud-free planet which has a range of albedos similar to those of the different surfaces found on Earth. If a significant fraction of the observed light is scattered by the planet's atmosphere, including clouds, then the amplitude of variations due to surface features will be diluted. Atmospheric variability (e.g. clouds) itself is extremely interesting because it provides evidence for weather. The planet's rotation period, fractional ice and cloud cover, gross distribution of land and water on the surface, large scale weather patterns, large regions of unusual reflectivity or color (such as major desserts or vegetation's "red edge") as well as the geometry of its spin, orbit, and illumination relative to the observer all have substantial effects on the planet's rotational light curve.

Provincial variation of carbon emissions from bituminous coal: Influence of inertinite and other factors

USGS Publications Warehouse

Quick, J.C.; Brill, T.

2002-01-01

We observe a 1.3 kg C/net GJ variation of carbon emissions due to inertinite abundance in some commercially available bituminous coal. An additional 0.9 kg C/net GJ variation of carbon emissions is expected due to the extent of coalification through the bituminous rank stages. Each percentage of sulfur in bituminous coal reduces carbon emissions by about 0.08 kg C/net GJ. Other factors, such as mineral content, liptinite abundance and individual macerals, also influence carbon emissions, but their quantitative effect is less certain. The large range of carbon emissions within the bituminous rank class suggests that rank- specific carbon emission factors are provincial rather than global. Although carbon emission factors that better account for this provincial variation might be calculated, we show that the data used for this calculation may vary according to the methods used to sample and analyze coal. Provincial variation of carbon emissions and the use of different coal sampling and analytical methods complicate the verification of national greenhouse gas inventories. Published by Elsevier Science B.V.

Crustal density contrast detection by global gravity and topography models and in-situ gravity observations

NASA Astrophysics Data System (ADS)

Claessens, S. J.

2016-12-01

Mass density contrasts in the Earth's crust can be detected using an inversion of terrestrial or airborne gravity data. This contribution shows a technique to detect short-scale density contrasts using in-situ gravity observations in combination with a high-resolution global gravity model that includes variations in the gravity field due to topography. The technique is exemplified at various test sites using the Global Gravity Model Plus (GGMplus), which is a 7.2 arcsec resolution model of the Earth's gravitational field, covering all land masses and near-coastal areas within +/- 60° latitude. The model is a composite of GRACE and GOCE satellite observations, the EGM2008 global gravity model, and short-scale topographic gravity effects. Since variations in the Earth's gravity field due to topography are successfully modelled by GGMplus, any remaining differences with in-situ gravity observations are primarily due to mass density variations. It is shown that this technique effectively filters out large-scale density variations, and highlights short-scale near-surface density contrasts in the Earth's crust. Numerical results using recent high-density gravity surveys are presented, which indicate a strong correlation between density contrasts found and known lines of geological significance.

Epigenetic supersimilarity of monozygotic twin pairs

USDA-ARS?s Scientific Manuscript database

Monozygotic twins have long been studied to estimate heritability and explore epigenetic influences on phenotypic variation. The phenotypic and epigenetic similarities of monozygotic twins have been assumed to be largely due to their genetic identity. Here, by analyzing data from a genome-scale stud...

Comparison of Dissolution Similarity Assessment Methods for Products with Large Variations: f2 Statistics and Model-Independent Multivariate Confidence Region Procedure for Dissolution Profiles of Multiple Oral Products.

PubMed

Yoshida, Hiroyuki; Shibata, Hiroko; Izutsu, Ken-Ichi; Goda, Yukihiro

2017-01-01

The current Japanese Ministry of Health Labour and Welfare (MHLW)'s Guideline for Bioequivalence Studies of Generic Products uses averaged dissolution rates for the assessment of dissolution similarity between test and reference formulations. This study clarifies how the application of model-independent multivariate confidence region procedure (Method B), described in the European Medical Agency and U.S. Food and Drug Administration guidelines, affects similarity outcomes obtained empirically from dissolution profiles with large variations in individual dissolution rates. Sixty-one datasets of dissolution profiles for immediate release, oral generic, and corresponding innovator products that showed large variation in individual dissolution rates in generic products were assessed on their similarity by using the f 2 statistics defined in the MHLW guidelines (MHLW f 2 method) and two different Method B procedures, including a bootstrap method applied with f 2 statistics (BS method) and a multivariate analysis method using the Mahalanobis distance (MV method). The MHLW f 2 and BS methods provided similar dissolution similarities between reference and generic products. Although a small difference in the similarity assessment may be due to the decrease in the lower confidence interval for expected f 2 values derived from the large variation in individual dissolution rates, the MV method provided results different from those obtained through MHLW f 2 and BS methods. Analysis of actual dissolution data for products with large individual variations would provide valuable information towards an enhanced understanding of these methods and their possible incorporation in the MHLW guidelines.

Spring-fall asymmetry of substorm strength, geomagnetic activity and solar wind: Implications for semiannual variation and solar hemispheric asymmetry

USGS Publications Warehouse

Marsula, K.; Tanskanen, E.; Love, J.J.

2011-01-01

We study the seasonal variation of substorms, geomagnetic activity and their solar wind drivers in 1993–2008. The number of substorms and substorm mean duration depict an annual variation with maxima in Winter and Summer, respectively, reflecting the annual change of the local ionosphere. In contradiction, substorm mean amplitude, substorm total efficiency and global geomagnetic activity show a dominant annual variation, with equinoctial maxima alternating between Spring in solar cycle 22 and Fall in cycle 23. The largest annual variations were found in 1994 and 2003, in the declining phase of the two cycles when high-speed streams dominate the solar wind. A similar, large annual variation is found in the solar wind driver of substorms and geomagnetic activity, which implies that the annual variation of substorm strength, substorm efficiency and geomagnetic activity is not due to ionospheric conditions but to a hemispherically asymmetric distribution of solar wind which varies from one cycle to another. Our results imply that the overall semiannual variation in global geomagnetic activity has been seriously overestimated, and is largely an artifact of the dominant annual variation with maxima alternating between Spring and Fall. The results also suggest an intimate connection between the asymmetry of solar magnetic fields and some of the largest geomagnetic disturbances, offering interesting new pathways for forecasting disturbances with a longer lead time to the future.

Developing 100K Affymetrix Axiom SNP Array for Polyploid Sugarcane

USDA-ARS?s Scientific Manuscript database

Sugarcane genotyping or fingerprinting has long been a daunting task due to its high polyploidy level with large number of chromosomes. Single nucleotide polymorphisms (SNPs) are very abundant DNA sequence variations in the genomes. With the advance of next generation sequencing (NGS) technologies, ...

Total Hydrogen Budget of the Equatorial Upper Stratosphere

DTIC Science & Technology

2010-02-24

series show quasi- biennial ( QBO ) variations which peak near 2.2 hPa in the equatorial upper stratosphere due to the large vertical gradients in CH4...Cordero et al., 1997] and directly relate to the observed QBO variations in H2O through CH4 oxidation. An increase in H2O mixing ratios during the early...by calculating the amplitudes of the QBO , annual, and semiannual cycles as function of pressure determined by a least squares regression fit to the

Facial Cosmetics and Attractiveness: Comparing the Effect Sizes of Professionally-Applied Cosmetics and Identity.

PubMed

Jones, Alex L; Kramer, Robin S S

2016-01-01

Forms of body decoration exist in all human cultures. However, in Western societies, women are more likely to engage in appearance modification, especially through the use of facial cosmetics. How effective are cosmetics at altering attractiveness? Previous research has hinted that the effect is not large, especially when compared to the variation in attractiveness observed between individuals due to differences in identity. In order to build a fuller understanding of how cosmetics and identity affect attractiveness, here we examine how professionally-applied cosmetics alter attractiveness and compare this effect with the variation in attractiveness observed between individuals. In Study 1, 33 YouTube models were rated for attractiveness before and after the application of professionally-applied cosmetics. Cosmetics explained a larger proportion of the variation in attractiveness compared with previous studies, but this effect remained smaller than variation caused by differences in attractiveness between individuals. Study 2 replicated the results of the first study with a sample of 45 supermodels, with the aim of examining the effect of cosmetics in a sample of faces with low variation in attractiveness between individuals. While the effect size of cosmetics was generally large, between-person variability due to identity remained larger. Both studies also found interactions between cosmetics and identity-more attractive models received smaller increases when cosmetics were worn. Overall, we show that professionally-applied cosmetics produce a larger effect than self-applied cosmetics, an important theoretical consideration for the field. However, the effect of individual differences in facial appearance is ultimately more important in perceptions of attractiveness.

Facial Cosmetics and Attractiveness: Comparing the Effect Sizes of Professionally-Applied Cosmetics and Identity

PubMed Central

Kramer, Robin S. S.

2016-01-01

Forms of body decoration exist in all human cultures. However, in Western societies, women are more likely to engage in appearance modification, especially through the use of facial cosmetics. How effective are cosmetics at altering attractiveness? Previous research has hinted that the effect is not large, especially when compared to the variation in attractiveness observed between individuals due to differences in identity. In order to build a fuller understanding of how cosmetics and identity affect attractiveness, here we examine how professionally-applied cosmetics alter attractiveness and compare this effect with the variation in attractiveness observed between individuals. In Study 1, 33 YouTube models were rated for attractiveness before and after the application of professionally-applied cosmetics. Cosmetics explained a larger proportion of the variation in attractiveness compared with previous studies, but this effect remained smaller than variation caused by differences in attractiveness between individuals. Study 2 replicated the results of the first study with a sample of 45 supermodels, with the aim of examining the effect of cosmetics in a sample of faces with low variation in attractiveness between individuals. While the effect size of cosmetics was generally large, between-person variability due to identity remained larger. Both studies also found interactions between cosmetics and identity–more attractive models received smaller increases when cosmetics were worn. Overall, we show that professionally-applied cosmetics produce a larger effect than self-applied cosmetics, an important theoretical consideration for the field. However, the effect of individual differences in facial appearance is ultimately more important in perceptions of attractiveness. PMID:27727311

Modelling Continuing Load at Disaggregated Levels

ERIC Educational Resources Information Center

Seidel, Ewa

2014-01-01

The current methodology of estimating load in the following year at Flinders University has achieved reasonable accuracy in the previous capped funding environment, particularly at the university level, due largely to our university having stable intakes and student profiles. While historically within reasonable limits, variation in estimates at…

Development and utilization of 100K SNP array in Saccharum Spp.

USDA-ARS?s Scientific Manuscript database

Sugarcane genotyping or fingerprinting has long been a daunting task due to its high polyploidy level with large number of chromosomes. Single nucleotide polymorphisms (SNPs) are very abundant DNA sequence variations in the genome. With the advance of next generation sequencing (NGS) technologies, m...

Population size is weakly related to quantitative genetic variation and trait differentiation in a stream fish.

PubMed

Wood, Jacquelyn L A; Tezel, Defne; Joyal, Destin; Fraser, Dylan J

2015-09-01

How population size influences quantitative genetic variation and differentiation among natural, fragmented populations remains unresolved. Small, isolated populations might occupy poor quality habitats and lose genetic variation more rapidly due to genetic drift than large populations. Genetic drift might furthermore overcome selection as population size decreases. Collectively, this might result in directional changes in additive genetic variation (VA ) and trait differentiation (QST ) from small to large population size. Alternatively, small populations might exhibit larger variation in VA and QST if habitat fragmentation increases variability in habitat types. We explored these alternatives by investigating VA and QST using nine fragmented populations of brook trout varying 50-fold in census size N (179-8416) and 10-fold in effective number of breeders, Nb (18-135). Across 15 traits, no evidence was found for consistent differences in VA and QST with population size and almost no evidence for increased variability of VA or QST estimates at small population size. This suggests that (i) small populations of some species may retain adaptive potential according to commonly adopted quantitative genetic measures and (ii) populations of varying sizes experience a variety of environmental conditions in nature, however extremely large studies are likely required before any firm conclusions can be made. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

DNA Sequence Variation at the Period Locus within and among Species of the Drosophila Melanogaster Complex

PubMed Central

Kliman, R. M.; Hey, J.

1993-01-01

A 1.9-kilobase region of the period locus was sequenced in six individuals of Drosophila melanogaster and from six individuals of each of three sibling species: Drosophila simulans, Drosophila sechellia and Drosophila mauritiana. Extensive genealogical analysis of 174 polymorphic sites reveals a complex history. It appears that D. simulans, as a large population still segregating very old lineages, gave rise to the island species D. mauritiana and D. sechellia. Rather than considering these speciation events as having produced ``sister'' taxa, it seems more appropriate to consider D. simulans a parent species to D. sechellia and D. mauritiana. The order, in time, of these two phylogenetic events remains unclear. D. mauritiana supports a large number of polymorphisms, many of which are shared with D. simulans, and so appears to have begun and persisted as a large population. In contrast, D. sechellia has very little variation and seems to have experienced a severe population bottleneck. Alternatively, the low variation in D. sechellia could be due to recent directional selection and genetic hitchhiking at or near the per locus. PMID:8436278

Transfer between pose and expression training in face recognition.

PubMed

Chen, Wenfeng; Liu, Chang Hong

2009-02-01

Prior research has shown that recognition of unfamiliar faces is susceptible to image variations due to pose and expression changes. However, little is known about how these variations on a new face are learnt and handled. We aimed to investigate whether exposures to one type of variation facilitate recognition in the untrained variation. In Experiment 1, faces were trained in multiple or single pose but were tested with a new expression. In Experiment 2, faces were trained in multiple or single expression but were tested in a new pose. We found that higher level of exposure to pose information facilitated recognition of the trained face in a new expression. However, multiple-expression training failed to transfer to a new pose. The findings suggest that generalisation of pose training may be extended to different types of variation whereas generalisation of expression training is largely confined within the trained type of variation.

Magnetic Field Strengths and Grain Alignment Variations in the Local Bubble Wall

NASA Astrophysics Data System (ADS)

Medan, Ilija; Andersson, B.-G.

2018-01-01

Optical and infrared continuum polarization is known to be due to irregular dust grains aligned with the magnetic field. This provides an important tool to probe the geometry and strength of those fields, particularly if the variations in the grain alignment efficiencies can be understood. Here, we examine polarization variations observed throughout the Local Bubble for b>30○, using a large polarization survey of the North Galactic cap from Berdyugin et al. (2014). These data are supported by archival photometric and spectroscopic data along with the mapping of the Local Bubble by Lallement et al. (2003). We can accurately model the observational data assuming that the grain alignment variations are due to the radiation from the OB associations within 1 kpc of the sun. This strongly supports radiatively driven grain alignment. We also probe the relative strength of the magnetic field in the wall of the Local Bubble using the Davis-Chandrasekhar-Fermi method. We find evidence for a bimodal field strength distribution, where the variations in the field are correlated with the variations in grain alignment efficiency, indicating that the higher strength regions might represent a compression of the wall by the interaction of the outflow in the Local Bubble and the opposing flows by the surrounding OB associations.

Evidence of Dynamic Crustal Deformation in Tohoku, Japan, From Time-Varying Receiver Functions

NASA Astrophysics Data System (ADS)

Porritt, R. W.; Yoshioka, S.

2017-10-01

Temporal variation of crustal structure is key to our understanding of Earth processes on human timescales. Often, we expect that the most significant structural variations are caused by strong ground shaking associated with large earthquakes, and recent studies seem to confirm this. Here we test the possibility of using P receiver functions (PRF) to isolate structural variations over time. Synthetic receiver function tests indicate that structural variation could produce PRF changes on the same order of magnitude as random noise or contamination by local earthquakes. Nonetheless, we find significant variability in observed receiver functions over time at several stations located in northeastern Honshu. Immediately following the Tohoku-oki earthquake, we observe high PRF variation clustering spatially, especially in two regions near the beginning and end of the rupture plane. Due to the depth sensitivity of PRF and the timescales over which this variability is observed, we infer this effect is primarily due to fluid migration in volcanic regions and shear stress/strength reorganization. While the noise levels in PRF are high for this type of analysis, by sampling small data sets, the computational cost is lower than other methods, such as ambient noise, thereby making PRF a useful tool for estimating temporal variations in crustal structure.

Validation of Ray Tracing Code Refraction Effects

NASA Technical Reports Server (NTRS)

Heath, Stephanie L.; McAninch, Gerry L.; Smith, Charles D.; Conner, David A.

2008-01-01

NASA's current predictive capabilities using the ray tracing program (RTP) are validated using helicopter noise data taken at Eglin Air Force Base in 2007. By including refractive propagation effects due to wind and temperature, the ray tracing code is able to explain large variations in the data observed during the flight test.

Adoption and Use of Videocassette Recorders in the Third World.

ERIC Educational Resources Information Center

Straubhaar, Joseph; Boyd, Douglas A.

Videocassette recorder (VCR) acquisition and use in developing nations is largely an individual or household decision, and their rapid diffusion is influenced by several factors: price, and its variations due to government restrictions; income and income distribution; the content of broadcast television; the diversity of entertainment media…

Site-specific cotton management: Soil measurements

USDA-ARS?s Scientific Manuscript database

oil variability within fields has a large effect on crop growth and yield, often due to variations in soil texture and water holding capacity. This is particularly true in the alluvial soils of the Mississippi Delta, where profile sand contents can range from 20% to 90% within a field. Variable-rate...

A preliminary investigation of finite-element modeling for composite rotor blades

NASA Technical Reports Server (NTRS)

Lake, Renee C.; Nixon, Mark W.

1988-01-01

The results from an initial phase of an in-house study aimed at improving the dynamic and aerodynamic characteristics of composite rotor blades through the use of elastic couplings are presented. Large degree of freedom shell finite element models of an extension twist coupled composite tube were developed and analyzed using MSC/NASTRAN. An analysis employing a simplified beam finite element representation of the specimen with the equivalent engineering stiffness was additionally performed. Results from the shell finite element normal modes and frequency analysis were compared to those obtained experimentally, showing an agreement within 13 percent. There was appreciable degradation in the frequency prediction for the torsional mode, which is elastically coupled. This was due to the absence of off-diagonal coupling terms in the formulation of the equivalent engineering stiffness. Parametric studies of frequency variation due to small changes in ply orientation angle and ply thickness were also performed. Results showed linear frequency variations less than 2 percent per 1 degree variation in the ply orientation angle, and 1 percent per 0.0001 inch variation in the ply thickness.

Mechanisms Controlling the Interannual Variation of Mixed Layer Temperature Averaged over the Nino-3 Region

NASA Technical Reports Server (NTRS)

Kim, Seung-Bum; Lee, Tong; Fukumori, Ichiro

2007-01-01

The present study examines processes governing the interannual variation of MLT in the eastern equatorial Pacific.Processes controlling the interannual variation of mixed layer temperature (MLT) averaged over the Nino-3 domain (5 deg N-5 deg S, 150 deg-90 deg W) are studied using an ocean data assimilation product that covers the period of 1993-2003. The overall balance is such that surface heat flux opposes the MLT change but horizontal advection and subsurface processes assist the change. Advective tendencies are estimated here as the temperature fluxes through the domain's boundaries, with the boundary temperature referenced to the domain-averaged temperature to remove the dependence on temperature scale. This allows the authors to characterize external advective processes that warm or cool the water within the domain as a whole. The zonal advective tendency is caused primarily by large-scale advection of warm-pool water through the western boundary of the domain. The meridional advective tendency is contributed to mostly by Ekman current advecting large-scale temperature anomalies through the southern boundary of the domain. Unlike many previous studies, the subsurface processes that consist of vertical mixing and entrainment are explicitly evaluated. In particular, a rigorous method to estimate entrainment allows an exact budget closure. The vertical mixing across the mixed layer (ML) base has a contribution in phase with the MLT change. The entrainment tendency due to the temporal change in ML depth is negligible compared to other subsurface processes. The entrainment tendency by vertical advection across the ML base is dominated by large-scale changes in upwelling and the temperature of upwelling water. Tropical instability waves (TIWs) result in smaller-scale vertical advection that warms the domain during La Nina cooling events. However, such a warming tendency is overwhelmed by the cooling tendency associated with the large-scale upwelling by a factor of 2. In summary, all the balance terms are important in the MLT budget except the entrainment due to lateral induction and temporal variation in ML depth. All three advective tendencies are primarily caused by large-scale and low-frequency processes, and they assist the Nino-3 MLT change.

Spring-fall asymmetry of substorm strength, geomagnetic activity and solar wind: Implications for semiannual variation and solar hemispheric asymmetry

USGS Publications Warehouse

Mursula, K.; Tanskanen, E.; Love, J.J.

2011-01-01

We study the seasonal variation of substorms, geomagnetic activity and their solar wind drivers in 1993-2008. The number of substorms and substorm mean duration depict an annual variation with maxima in Winter and Summer, respectively, reflecting the annual change of the local ionosphere. In contradiction, substorm mean amplitude, substorm total efficiency and global geomagnetic activity show a dominant annual variation, with equinoctial maxima alternating between Spring in solar cycle 22 and Fall in cycle 23. The largest annual variations were found in 1994 and 2003, in the declining phase of the two cycles when high-speed streams dominate the solar wind. A similar, large annual variation is found in the solar wind driver of substorms and geomagnetic activity, which implies that the annual variation of substorm strength, substorm efficiency and geomagnetic activity is not due to ionospheric conditions but to a hemispherically asymmetric distribution of solar wind which varies from one cycle to another. Our results imply that the overall semiannual variation in global geomagnetic activity has been seriously overestimated, and is largely an artifact of the dominant annual variation with maxima alternating between Spring and Fall. The results also suggest an intimate connection between the asymmetry of solar magnetic fields and some of the largest geomagnetic disturbances, offering interesting new pathways for forecasting disturbances with a longer lead time to the future. Copyright ?? 2011 by the American Geophysical Union.

High performance computing to support multiscale representation of hydrography for the conterminous United States

USGS Publications Warehouse

Stanislawski, Larry V.; Liu, Yan; Buttenfield, Barbara P.; Survila, Kornelijus; Wendel, Jeffrey; Okok, Abdurraouf

2016-01-01

The National Hydrography Dataset (NHD) for the United States furnishes a comprehensive set of vector features representing the surface-waters in the country (U.S. Geological Survey 2000). The high-resolution (HR) layer of the NHD is largely comprised of hydrographic features originally derived from 1:24,000-scale (24K) U.S. Topographic maps. However, in recent years (2009 to present) densified hydrographic feature content, from sources as large as 1:2,400, have been incorporated into some watersheds of the HR NHD within the conterminous United States to better support the needs of various local and state organizations. As such, the HR NHD is a multiresolution dataset with obvious data density variations because of scale changes. In addition, data density variations exist within the HR NHD that are particularly evident in the surface-water flow network (NHD flowlines) because of natural variations of local geographic conditions; and also because of unintentional compilation inconsistencies due to variations in data collection standards and climate conditions over the many years of 24K hydrographic data collection (US Geological Survey 1955).

Explaining health care expenditure variation: large-sample evidence using linked survey and health administrative data.

PubMed

Ellis, Randall P; Fiebig, Denzil G; Johar, Meliyanni; Jones, Glenn; Savage, Elizabeth

2013-09-01

Explaining individual, regional, and provider variation in health care spending is of enormous value to policymakers but is often hampered by the lack of individual level detail in universal public health systems because budgeted spending is often not attributable to specific individuals. Even rarer is self-reported survey information that helps explain this variation in large samples. In this paper, we link a cross-sectional survey of 267 188 Australians age 45 and over to a panel dataset of annual healthcare costs calculated from several years of hospital, medical and pharmaceutical records. We use this data to distinguish between cost variations due to health shocks and those that are intrinsic (fixed) to an individual over three years. We find that high fixed expenditures are positively associated with age, especially older males, poor health, obesity, smoking, cancer, stroke and heart conditions. Being foreign born, speaking a foreign language at home and low income are more strongly associated with higher time-varying expenditures, suggesting greater exposure to adverse health shocks. Copyright © 2013 John Wiley & Sons, Ltd.

Hydrometer in the mantle: dln(Vs)/dln(Vp)

NASA Astrophysics Data System (ADS)

Li, L.; Weidner, D. J.

2010-12-01

The absorption of water into nominally non-hydrous phases is the probable storage mechanism of hydrogen throughout most of the mantle. Thus the water capacity in the mantle is greatest in the transition zone owing to the large water-solubility of ringwoodite and wadsleyite. However, the actual amount of water that is stored there is highly uncertain. Since water is probably brought down by subduction activity, it’s abundance is probably laterally variable. Thus, a metric that is sensitive to variations of water content are good candidates for hydrometers. Here we evaluate the parameter, dln(Vs)/dln(Vp), as such a parameter. It is useful to detect lateral variations of water if the effects of hydration on the parameter are different than those of temperature or composition. We compare the value of dln(Vs)/dln(Vp) due to the temperature with that due to the water content as a function of depth for the upper mantle. We have calculated dln(Vs)/dln(Vp) due to both water and temperature using a density functional theory approach, and available experimental data. Our results indicate that dln(Vs)/dln(Vp) due to water is distinguishable from dln(Vs)/dln(Vp) due to temperature or variations in iron content, particularly in ringwoodite. The difference increases with depth and making the lower part of the transition zone most identifiable as a water reservoir.

Groundwater storage variations in the North China Plain using multiple space geodetic observations

NASA Astrophysics Data System (ADS)

Feng, W.; Longuevergne, L.; Kusche, J.; Liang, S.; Zhang, Y.; Scanlon, B. R.; Shum, C. K.; Yeh, P. J. F.; Long, D.; Cao, G.; Zhong, M.; Xu, H.; Xia, J.

2017-12-01

Water storage and pressure variations in the subsurface generate measurable gravity changes and surface displacements. This study presents the joint interpretation of GRACE and GPS/InSAR observations to better understand shallow and deep groundwater storage (GWS) variations associated with unsustainable pumping and impact of climate variability in the North China Plain (NCP). On seasonal timescales, GRACE-derived GWS variations are well explained by the combined effect of groundwater abstraction due to anthropogenic irrigation activities and groundwater recharge from natural precipitation. Interannual GWS variations in the NCP detected by GRACE is consistent with precipitation anomalies. During the drought years (e.g., 2002 and 2014), significant GWS depletion is detected by GRACE satellites. The GRACE-derived GWS variation rate is -8.0 ± 1.5 km3/yr during 2002-2014, which is significantly larger than the estimate from phreatic monitoring well observations. The difference between them indicates the significant GWS depletion in the confined deep aquifers of the NCP, generating large subsidence rates, which has been largely underestimated up to now. The GWS variation rate in deep aquifers estimated from GPS/InSAR observations can explain the difference between the GWS depletion rate from GRACE and that from well observations. Both GRACE and surface displacement offer significant potential to better understand water redistribution in shallow and deep aquifer systems of the NCP.

Trueness verification of actual creatinine assays in the European market demonstrates a disappointing variability that needs substantial improvement. An international study in the framework of the EC4 creatinine standardization working group.

PubMed

Delanghe, Joris R; Cobbaert, Christa; Galteau, Marie-Madeleine; Harmoinen, Aimo; Jansen, Rob; Kruse, Rolf; Laitinen, Päivi; Thienpont, Linda M; Wuyts, Birgitte; Weykamp, Cas; Panteghini, Mauro

2008-01-01

The European In Vitro Diagnostics (IVD) directive requires traceability to reference methods and materials of analytes. It is a task of the profession to verify the trueness of results and IVD compatibility. The results of a trueness verification study by the European Communities Confederation of Clinical Chemistry (EC4) working group on creatinine standardization are described, in which 189 European laboratories analyzed serum creatinine in a commutable serum-based material, using analytical systems from seven companies. Values were targeted using isotope dilution gas chromatography/mass spectrometry. Results were tested on their compliance to a set of three criteria: trueness, i.e., no significant bias relative to the target value, between-laboratory variation and within-laboratory variation relative to the maximum allowable error. For the lower and intermediate level, values differed significantly from the target value in the Jaffe and the dry chemistry methods. At the high level, dry chemistry yielded higher results. Between-laboratory coefficients of variation ranged from 4.37% to 8.74%. Total error budget was mainly consumed by the bias. Non-compensated Jaffe methods largely exceeded the total error budget. Best results were obtained for the enzymatic method. The dry chemistry method consumed a large part of its error budget due to calibration bias. Despite the European IVD directive and the growing needs for creatinine standardization, an unacceptable inter-laboratory variation was observed, which was mainly due to calibration differences. The calibration variation has major clinical consequences, in particular in pediatrics, where reference ranges for serum and plasma creatinine are low, and in the estimation of glomerular filtration rate.

Air-mediated pollen flow from genetically modified to conventional crops.

PubMed

Kuparinen, Anna; Schurr, Frank; Tackenberg, Oliver; O'Hara, Robert B

2007-03-01

Tools for estimating pollen dispersal and the resulting gene flow are necessary to assess the risk of gene flow from genetically modified (GM) to conventional fields, and to quantify the effectiveness of measures that may prevent such gene flow. A mechanistic simulation model is presented and used to simulate pollen dispersal by wind in different agricultural scenarios over realistic pollination periods. The relative importance of landscape-related variables such as isolation distance, topography, spatial configuration of the fields, GM field size and barrier, and environmental variation are examined in order to find ways to minimize gene flow and to detect possible risk factors. The simulations demonstrated a large variation in pollen dispersal and in the predicted amount of contamination between different pollination periods. This was largely due to variation in vertical wind. As this variation in wind conditions is difficult to control through management measures, it should be carefully considered when estimating the risk of gene flow from GM crops. On average, the predicted level of gene flow decreased with increasing isolation distance and with increasing depth of the conventional field, and increased with increasing GM field size. Therefore, at a national scale and over the long term these landscape properties should be accounted for when setting regulations for controlling gene flow. However, at the level of an individual field the level of gene flow may be dominated by uncontrollable variation. Due to the sensitivity of pollen dispersal to the wind, we conclude that gene flow cannot be summarized only by the mean contamination; information about the frequency of extreme events should also be considered. The modeling approach described in this paper offers a way to predict and compare pollen dispersal and gene flow in varying environmental conditions, and to assess the effectiveness of different management measures.

Some calculated effects of non-uniform inflow on the radiated noise of a large wind turbine

NASA Technical Reports Server (NTRS)

Greene, G. C.; Hubbard, H. H.

1980-01-01

Far field computations were performed for a large wind turbine to evaluate the effects of non-uniform aerodynamic loading over the rotor disk. A modified version of the Farassat/Nystrom propeller noise prediction program was applied to account for the variations in loading due to inflow interruption by the upstream support tower. The computations indicate that for the uniform inflow case, relatively low noise levels are generated and the first rotational harmonic dominated the spectrum. For cases representing wake flow deficiences due to the tower structure, subtantially increased noise levels for all harmonics are indicated, the greatest increases being associated with the higher order harmonics.

Enhanced laboratory sensitivity to variation of the fine-structure constant using highly charged ions.

PubMed

Berengut, J C; Dzuba, V A; Flambaum, V V

2010-09-17

We study atomic systems that are in the frequency range of optical atomic clocks and have enhanced sensitivity to potential time variation of the fine-structure constant α. The high sensitivity is due to coherent contributions from three factors: high nuclear charge Z, high ionization degree, and significant differences in the configuration composition of the states involved. Configuration crossing keeps the frequencies in the optical range despite the large ionization energies. We discuss a few promising examples that have the largest α sensitivities seen in atomic systems.

Recent Changes in Land Water Storage and its Contribution to Sea Level Variations

NASA Astrophysics Data System (ADS)

Wada, Yoshihide; Reager, John T.; Chao, Benjamin F.; Wang, Jida; Lo, Min-Hui; Song, Chunqiao; Li, Yuwen; Gardner, Alex S.

2017-01-01

Sea level rise is generally attributed to increased ocean heat content and increased rates glacier and ice melt. However, human transformations of Earth's surface have impacted water exchange between land, atmosphere, and ocean, ultimately affecting global sea level variations. Impoundment of water in reservoirs and artificial lakes has reduced the outflow of water to the sea, while river runoff has increased due to groundwater mining, wetland and endorheic lake storage losses, and deforestation. In addition, climate-driven changes in land water stores can have a large impact on global sea level variations over decadal timescales. Here, we review each component of negative and positive land water contribution separately in order to highlight and understand recent changes in land water contribution to sea level variations.

Recent Changes in Land Water Storage and Its Contribution to Sea Level Variations

NASA Technical Reports Server (NTRS)

Wada, Yoshihide; Reager, John T.; Chao, Benjamin F.; Wang, Jida; Lo, Min-Hui; Song, Chunqiao; Li, Yuwen; Gardner, Alex S.

2016-01-01

Sea level rise is generally attributed to increased ocean heat content and increased rates glacier and ice melt. However, human transformations of Earth's surface have impacted water exchange between land, atmosphere, and ocean, ultimately affecting global sea level variations. Impoundment of water in reservoirs and artificial lakes has reduced the outflow of water to the sea, while river runoff has increased due to groundwater mining, wetland and endorheic lake storage losses, and deforestation. In addition, climate-driven changes in land water stores can have a large impact on global sea level variations over decadal timescales. Here, we review each component of negative and positive land water contribution separately in order to highlight and understand recent changes in land water contribution to sea level variations.

The genetic architecture of sexually selected traits in two natural populations of Drosophila montana

PubMed Central

Veltsos, P; Gregson, E; Morrissey, B; Slate, J; Hoikkala, A; Butlin, R K; Ritchie, M G

2015-01-01

We investigated the genetic architecture of courtship song and cuticular hydrocarbon traits in two phygenetically distinct populations of Drosophila montana. To study natural variation in these two important traits, we analysed within-population crosses among individuals sampled from the wild. Hence, the genetic variation analysed should represent that available for natural and sexual selection to act upon. In contrast to previous between-population crosses in this species, no major quantitative trait loci (QTLs) were detected, perhaps because the between-population QTLs were due to fixed differences between the populations. Partitioning the trait variation to chromosomes suggested a broadly polygenic genetic architecture of within-population variation, although some chromosomes explained more variation in one population compared with the other. Studies of natural variation provide an important contrast to crosses between species or divergent lines, but our analysis highlights recent concerns that segregating variation within populations for important quantitative ecological traits may largely consist of small effect alleles, difficult to detect with studies of moderate power. PMID:26198076

Comparative sequencing in the genus Lycopersicon. Implications for the evolution of fruit size in the domestication of cultivated tomatoes.

PubMed Central

Nesbitt, T Clint; Tanksley, Steven D

2002-01-01

Sequence variation was sampled in cultivated and related wild forms of tomato at fw2.2--a fruit weight QTL key to the evolution of domesticated tomatoes. Variation at fw2.2 was contrasted with variation at four other loci not involved in fruit weight determination. Several conclusions could be reached: (1) Fruit weight variation attributable to fw2.2 is not caused by variation in the FW2.2 protein sequence; more likely, it is due to transcriptional variation associated with one or more of eight nucleotide changes unique to the promoter of large-fruit alleles; (2) fw2.2 and loci not involved in fruit weight have not evolved at distinguishably different rates in cultivated and wild tomatoes, despite the fact that fw2.2 was likely a target of selection during domestication; (3) molecular-clock-based estimates suggest that the large-fruit allele of fw2.2, now fixed in most cultivated tomatoes, arose in tomato germplasm long before domestication; (4) extant accessions of L. esculentum var. cerasiforme, the subspecies thought to be the most likely wild ancestor of domesticated tomatoes, appear to be an admixture of wild and cultivated tomatoes rather than a transitional step from wild to domesticated tomatoes; and (5) despite the fact that cerasiforme accessions are polymorphic for large- and small-fruit alleles at fw2.2, no significant association was detected between fruit size and fw2.2 genotypes in the subspecies--as tested by association genetic studies in the relatively small sample studied--suggesting the role of other fruit weight QTL in fruit weight variation in cerasiforme. PMID:12242247

Simultaneous optical and IR photometry of the T Tauri star RU LUPI

NASA Astrophysics Data System (ADS)

Giovannelli, F.; Errico, L.; Vittone, A. A.; Rossi, C.

1991-01-01

Two simultaneous optical and IR photometric observation runs of RU Lupi were carried out at the ESO in February 1983 and in June 1986 within the framework of a large multifrequency coordinated campaign of observations. RU Lupi was found in two different states. In the first case the star was in 'quiescence', in the second it was brighter and showed larger variations due to flare like event (FLE). A positive correlation between luminosity and its variations has been found. A Fourier analysis of the light curve available in literature was performed to point out the rotational period. The analysis of these data excludes any periodicity. The color-color diagnostic diagram clearly shows that RU Lupi variability is mainly due to a strong photospheric and chromospheric activity.

Linkage Map Construction and QTL Analysis of Agronomic and Fiber Quality Traits in Cotton.

USDA-ARS?s Scientific Manuscript database

The superior fiber properties of Gossypium barbadense L. serve as a source of novel variation for improving fiber quality in Upland cotton (G. hirsutum L.), but introgression from G. barbadense has been largely unsuccessful due to hybrid breakdown and a lack of genetic and genomic resources. In an e...

Investigation of Large Capacity Optical Memories for Correlator Applications.

DTIC Science & Technology

1981-10-01

refringence varies to a certain extent over the area ofeach sample film due to nonuniform stretching during manufacture. Such variations make the...made with the tank placed in a lair ’ c number of positions in the scene -- clearly an excessive burden. Now when the tarets are positioned in the scene

Seasonal variation of infiltration capacities of soils in western Oregon.

Treesearch

Michael G. Johnson; Robert L. Beschta

1981-01-01

Infiltration capacities were 50 percent greater during fall than during summer for forest soils of western Oregon. These results contrast with those measured in other studies. In forested areas, investigators should be aware of potentially large seasonal changes in infiltration capacities. Such seasonal changes may exceed effects due to applied treatments (logging,...

Framework for improved confidence in modeled nitrous oxide estimates for biofuel regulatory standards

USDA-ARS?s Scientific Manuscript database

There is a large variation in local commodity prices across the United States, with farmers receiving less for their soybeans produced on their farm, and paying more for meal to feed their livestock, thereby reducing their profitability. This price differential is due to a number of factors includin...

Predicting Southern Appalachian overstory vegetation with digital terrain data

Treesearch

Paul V. Bolstad; Wayne Swank; James Vose

1998-01-01

Vegetation in mountainous regions responds to small-scale variation in terrain, largely due to effects on both temperature and soil moisture. However, there are few studies of quantitative, terrain-based methods for predicting vegetation composition. This study investigated relationships between forest composition, elevation, and a derived index of terrain shape, and...

Asteroid Impact Risk: Ground Hazard versus Impactor Size

NASA Technical Reports Server (NTRS)

Mathias, Donovan; Wheeler, Lorien; Dotson, Jessie; Aftosmis, Michael; Tarano, Ana

2017-01-01

We utilized a probabilistic asteroid impact risk (PAIR) model to stochastically assess the impact risk due to an ensemble population of Near-Earth Objects (NEOs). Concretely, we present the variation of risk with impactor size. Results suggest that large impactors dominate the average risk, even when only considering the subset of undiscovered NEOs.

Rapid Detection and Identification of Streptococcus Iniae Using a Monoclonal Antibody-Based Indirect Fluorescent Antibody Technique

USDA-ARS?s Scientific Manuscript database

Streptococcus iniae is among the major pathogens of a large number of fish species cultured in fresh and marine recirculating and net pen production systems . The traditional plate culture technique to detect and identify S. iniae is time consuming and may be problematic due to phenotypic variations...

Clustering and relative velocity of heavy particles under gravitational settling in isotropic turbulent flows

NASA Astrophysics Data System (ADS)

Jin, Guodong; He, Guo-Wei

2015-11-01

Clustering and intermittency in radial relative velocity (RRV) of heavy particles of same size settling in turbulent flows can be remarkably changed due to gravity. Clustering is monotonically reduced at Stokes number less than 1 under gravity due to the disability of the centrifugal mechanism, however it is non-monotonically enhanced at Stokes number greater than 1 due to the multiplicative amplification in the case that the proposed effective Kubo number is less than 1. Although gravity causes monotonical reduction in the rms of RRV of particles at a given Stokes number with decreasing Froude number, the variation tendency in the tails of standardized PDF of RRV versus Froude number is obviously different: the tails become narrower at a small Stokes number, while they become broader at a large Stokes number. The mechanism of this variation stems from the compromise between the following two competing factors. The mitigation of correlation of particle positions and the regions of high strain rate which are more intermittent reduces the intermittency in RRV at small Stokes numbers, while the significant reduction in the backward-in-time relative separations will make particle pairs see small-scale structures, leading to a higher intermittency in RRV at large Stokes numbers. NSAF of China (grant number U1230126); NSFC (grant numbers 11072247 and 11232011).

Seasonal stratospheric photochemistry on Uranus and Neptune

NASA Astrophysics Data System (ADS)

Moses, Julianne I.; Fletcher, Leigh N.; Greathouse, Thomas K.; Orton, Glenn S.; Hue, Vincent

2018-06-01

A time-variable 1D photochemical model is used to study the distribution of stratospheric hydrocarbons as a function of altitude, latitude, and season on Uranus and Neptune. The results for Neptune indicate that in the absence of stratospheric circulation or other meridional transport processes, the hydrocarbon abundances exhibit strong seasonal and meridional variations in the upper stratosphere, but that these variations become increasingly damped with depth due to increasing dynamical and chemical time scales. At high altitudes, hydrocarbon mixing ratios are typically largest where the solar insolation is the greatest, leading to strong hemispheric dichotomies between the summer-to-fall hemisphere and winter-to-spring hemisphere. At mbar pressures and deeper, slower chemistry and diffusion lead to latitude variations that become more symmetric about the equator. On Uranus, the stagnant, poorly mixed stratosphere confines methane and its photochemical products to higher pressures, where chemistry and diffusion time scales remain large. Seasonal variations in hydrocarbons are therefore predicted to be more muted on Uranus, despite the planet's very large obliquity. Radiative-transfer simulations demonstrate that latitude variations in hydrocarbons on both planets are potentially observable with future JWST mid-infrared spectral imaging. Our seasonal model predictions for Neptune compare well with retrieved C2H2 and C2H6 abundances from spatially resolved ground-based observations (no such observations currently exist for Uranus), suggesting that stratospheric circulation - which was not included in these models - may have little influence on the large-scale meridional hydrocarbon distributions on Neptune, unlike the situation on Jupiter and Saturn.

Critical Climate-Sensitive and Important Grain-Producing Regions: Grain Production/Yield Variations Due to Climate Fluctuations. Volume 1

NASA Technical Reports Server (NTRS)

Welker, J. E.

2004-01-01

Ideally, the Crop Country Inventory, CCI, is a methodology for the pre-harvest prediction of large variations in a country s crop production. This is accomplished by monitoring the historical climatic fluctuations, especially during the crop calendar period, in a climate sensitive large crop production region or sub-country, rather than the entire country. The argument can be made that the climatic fluctuations in the climatic sensitive region are responsible for the major annual crop country variations and that the remainder of the country, without major climatic fluctuations for a given year, can be assumed to be a steady-state crop producer. The principal data set that has been used is the Global Climate Mode (GCM) data from the National Center for Environmental Prediction (NCEP), taken over the last half century. As a test of its accuracy, GCM data can and has been correlated with the actual meteorological station data at the station site.

Influence of Hybrid Perovskite Fabrication Methods on Film Formation, Electronic Structure, and Solar Cell Performance

PubMed Central

Schnier, Tobias; Emara, Jennifer; Olthof, Selina; Meerholz, Klaus

2017-01-01

Hybrid organic/inorganic halide perovskites have lately been a topic of great interest in the field of solar cell applications, with the potential to achieve device efficiencies exceeding other thin film device technologies. Yet, large variations in device efficiency and basic physical properties are reported. This is due to unintentional variations during film processing, which have not been sufficiently investigated so far. We therefore conducted an extensive study of the morphology and electronic structure of a large number of CH3NH3PbI3 perovskite where we show how the preparation method as well as the mixing ratio of educts methylammonium iodide and lead(II) iodide impact properties like film formation, crystal structure, density of states, energy levels, and ultimately the solar cell performance. PMID:28287555

Large-scale compositional heterogeneity in the Earth's mantle

NASA Astrophysics Data System (ADS)

Ballmer, M.

2017-12-01

Seismic imaging of subducted Farallon and Tethys lithosphere in the lower mantle has been taken as evidence for whole-mantle convection, and efficient mantle mixing. However, cosmochemical constraints point to a lower-mantle composition that has a lower Mg/Si compared to upper-mantle pyrolite. Moreover, geochemical signatures of magmatic rocks indicate the long-term persistence of primordial reservoirs somewhere in the mantle. In this presentation, I establish geodynamic mechanisms for sustaining large-scale (primordial) heterogeneity in the Earth's mantle using numerical models. Mantle flow is controlled by rock density and viscosity. Variations in intrinsic rock density, such as due to heterogeneity in basalt or iron content, can induce layering or partial layering in the mantle. Layering can be sustained in the presence of persistent whole mantle convection due to active "unmixing" of heterogeneity in low-viscosity domains, e.g. in the transition zone or near the core-mantle boundary [1]. On the other hand, lateral variations in intrinsic rock viscosity, such as due to heterogeneity in Mg/Si, can strongly affect the mixing timescales of the mantle. In the extreme case, intrinsically strong rocks may remain unmixed through the age of the Earth, and persist as large-scale domains in the mid-mantle due to focusing of deformation along weak conveyor belts [2]. That large-scale lateral heterogeneity and/or layering can persist in the presence of whole-mantle convection can explain the stagnation of some slabs, as well as the deflection of some plumes, in the mid-mantle. These findings indeed motivate new seismic studies for rigorous testing of model predictions. [1] Ballmer, M. D., N. C. Schmerr, T. Nakagawa, and J. Ritsema (2015), Science Advances, doi:10.1126/sciadv.1500815. [2] Ballmer, M. D., C. Houser, J. W. Hernlund, R. Wentzcovitch, and K. Hirose (2017), Nature Geoscience, doi:10.1038/ngeo2898.

Size determines antennal sensitivity and behavioral threshold to odors in bumblebee workers

NASA Astrophysics Data System (ADS)

Spaethe, Johannes; Brockmann, Axel; Halbig, Christine; Tautz, Jürgen

2007-09-01

The eusocial bumblebees exhibit pronounced size variation among workers of the same colony. Differently sized workers engage in different tasks (alloethism); large individuals are found to have a higher probability to leave the colony and search for food, whereas small workers tend to stay inside the nest and attend to nest duties. We investigated the effect of size variation on morphology and physiology of the peripheral olfactory system and the behavioral response thresholds to odors in workers of Bombus terrestris. Number and density of olfactory sensilla on the antennae correlate significantly with worker size. Consistent with these morphological changes, we found that antennal sensitivity to odors increases with body size. Antennae of large individuals show higher electroantennogram responses to a given odor concentration than those of smaller nestmates. This finding indicates that large antennae exhibit an increased capability to catch odor molecules and thus are more sensitive to odors than small antennae. We confirmed this prediction in a dual choice behavioral experiment showing that large workers indeed are able to respond correctly to much lower odor concentrations than small workers. Learning performance in these experiments did not differ between small and large bumblebees. Our results clearly show that, in the social bumblebees, variation in olfactory sensilla number due to size differences among workers strongly affects individual odor sensitivity. We speculate that superior odor sensitivity of large workers has favored size-related division of labor in bumblebee colonies.

A new index for the quantification of chromosome number variation: an application to selected animal and plant groups.

PubMed

Peruzzi, Lorenzo; Caparelli, Katia Francesca; Bedini, Gianni

2014-07-21

Quantitative parameters have been used to characterize chromosome number (CN) variation. This gave us the idea to collect available data in various organisms and compare them, in order to verify if variation patterns differ between animal and plant groups and to quantify these patterns with an Index of CN Heterogeneity (ICNH), useful as a parameter to compare related taxonomical/geographical groups of organisms. To the best of our knowledge, this is the first attempt to compare CN variation in animal and plant groups with large datasets. The quantitative analysis allowed detecting significant differences among most groups of animals and plants. The most striking difference, however, is the close relationship between mean CN and SD restricted to plants, in which higher CN are also associated with a larger variation degree, possibly due to the well known genomic plasticity in this group and a propensity for polyploidization higher than in animals. The ICNH defined here can be easily calculated for both animal and plant groups based on commonly available data. It summarizes data accumulated in over a century of research and includes so-called anomalies like fB and fOCN, sometimes overlooked by researchers due to lack of a proper way of comparison. Copyright © 2014 Elsevier Ltd. All rights reserved.

Influence of geometry variations on the gravitational focusing of timelike geodesic congruences

NASA Astrophysics Data System (ADS)

Seriu, Masafumi

2015-10-01

We derive a set of equations describing the linear response of the convergence properties of a geodesic congruence to arbitrary geometry variations. It is a combination of equations describing the deviations from the standard Raychaudhuri-type equations due to the geodesic shifts and an equation describing the geodesic shifts due to the geometry variations. In this framework, the geometry variations, which can be chosen arbitrarily, serve as probes to investigate the gravitational contraction processes from various angles. We apply the obtained framework to the case of conformal geometry variations, characterized by an arbitrary function f (x ), and see that the formulas get simplified to a great extent. We investigate the response of the convergence properties of geodesics in the latest phase of gravitational contractions by restricting the class of conformal geometry variations to the one satisfying the strong energy condition. We then find out that in the final stage, f and D .D f control the overall contraction behavior and that the contraction rate gets larger when f is negative and |f | is so large as to overwhelm |D .D f |. (Here D .D is the Laplacian operator on the spatial hypersurfaces orthogonal to the geodesic congruence in concern.) To get more concrete insights, we also apply the framework to the time-reversed Friedmann-Robertson-Walker model as the simplest case of the singularity formations.

Global Climate Forcing from Albedo Change Caused by Large-scale Deforestation and Reforestation: Quantification and Attribution of Geographic Variation

NASA Technical Reports Server (NTRS)

Gao, Feng; Ghimire, Bardan; Jiao, Tong; Williams, Christopher A.; Masek, Jeffrey; Schaaf, Crystal

2017-01-01

Large-scale deforestation and reforestation have contributed substantially to historical and contemporary global climate change in part through albedo-induced radiative forcing, with meaningful implications for forest management aiming to mitigate climate change. Associated warming or cooling varies widely across the globe due to a range of factors including forest type, snow cover, and insolation, but resulting geographic variation remain spoorly described and has been largely based on model assessments. This study provides an observation-based approach to quantify local and global radiative forcings from large-scale deforestation and reforestation and further examines mechanisms that result in the spatial heterogeneity of radiative forcing. We incorporate a new spatially and temporally explicit land cover-specific albedo product derived from Moderate Resolution Imaging Spectroradiometer with a historical land use data set (Land Use Harmonization product). Spatial variation in radiative forcing was attributed to four mechanisms, including the change in snow-covered albedo, change in snow-free albedo, snow cover fraction, and incoming solar radiation. We find an albedo-only radiative forcing (RF) of -0.819 W m(exp -2) if year 2000 forests were completely deforested and converted to croplands. Albedo RF from global reforestation of present-day croplands to recover year 1700 forests is estimated to be 0.161 W m)exp -2). Snow-cover fraction is identified as the primary factor in determining the spatial variation of radiative forcing in winter, while the magnitude of the change in snow-free albedo is the primary factor determining variations in summertime RF. Findings reinforce the notion that, for conifers at the snowier high latitudes, albedo RF diminishes the warming from forest loss and the cooling from forest gain more so than for other forest types, latitudes, and climate settings.

Body Parts Dependent Joint Regressors for Human Pose Estimation in Still Images.

PubMed

Dantone, Matthias; Gall, Juergen; Leistner, Christian; Van Gool, Luc

2014-11-01

In this work, we address the problem of estimating 2d human pose from still images. Articulated body pose estimation is challenging due to the large variation in body poses and appearances of the different body parts. Recent methods that rely on the pictorial structure framework have shown to be very successful in solving this task. They model the body part appearances using discriminatively trained, independent part templates and the spatial relations of the body parts using a tree model. Within such a framework, we address the problem of obtaining better part templates which are able to handle a very high variation in appearance. To this end, we introduce parts dependent body joint regressors which are random forests that operate over two layers. While the first layer acts as an independent body part classifier, the second layer takes the estimated class distributions of the first one into account and is thereby able to predict joint locations by modeling the interdependence and co-occurrence of the parts. This helps to overcome typical ambiguities of tree structures, such as self-similarities of legs and arms. In addition, we introduce a novel data set termed FashionPose that contains over 7,000 images with a challenging variation of body part appearances due to a large variation of dressing styles. In the experiments, we demonstrate that the proposed parts dependent joint regressors outperform independent classifiers or regressors. The method also performs better or similar to the state-of-the-art in terms of accuracy, while running with a couple of frames per second.

When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity.

PubMed

Aydogan, Dogu Baran; Jacobs, Russell; Dulawa, Stephanie; Thompson, Summer L; Francois, Maite Christi; Toga, Arthur W; Dong, Hongwei; Knowles, James A; Shi, Yonggang

2018-04-16

Tractography is a powerful technique capable of non-invasively reconstructing the structural connections in the brain using diffusion MRI images, but the validation of tractograms is challenging due to lack of ground truth. Owing to recent developments in mapping the mouse brain connectome, high-resolution tracer injection-based axonal projection maps have been created and quickly adopted for the validation of tractography. Previous studies using tracer injections mainly focused on investigating the match in projections and optimal tractography protocols. Being a complicated technique, however, tractography relies on multiple stages of operations and parameters. These factors introduce large variabilities in tractograms, hindering the optimization of protocols and making the interpretation of results difficult. Based on this observation, in contrast to previous studies, in this work we focused on quantifying and ranking the amount of performance variation introduced by these factors. For this purpose, we performed over a million tractography experiments and studied the variability across different subjects, injections, anatomical constraints and tractography parameters. By using N-way ANOVA analysis, we show that all tractography parameters are significant and importantly performance variations with respect to the differences in subjects are comparable to the variations due to tractography parameters, which strongly underlines the importance of fully documenting the tractography protocols in scientific experiments. We also quantitatively show that inclusion of anatomical constraints is the most significant factor for improving tractography performance. Although this critical factor helps reduce false positives, our analysis indicates that anatomy-informed tractography still fails to capture a large portion of axonal projections.

Bone Histology in Dysalotosaurus lettowvorbecki (Ornithischia: Iguanodontia) – Variation, Growth, and Implications

PubMed Central

Hübner, Tom R.

2012-01-01

Background Dysalotosaurus lettowvorbecki is a small ornithopod dinosaur known from thousands of bones and several ontogenetic stages. It was found in a single locality within the Tendaguru Formation of southeastern Tanzania, possibly representing a single herd. Dysalotosaurus provides an excellent case study for examining variation in bone microstructure and life history and helps to unravel the still mysterious growth pattern of small ornithopods. Methodology/Principal Findings Five different skeletal elements were sampled, revealing microstructural variation between individuals, skeletal elements, cross sectional units, and ontogenetic stages. The bone wall consists of fibrolamellar bone with strong variability in vascularization and development of growth cycles. Larger bones with a high degree of utilization have high relative growth rates and seldom annuli/LAGs, whereas small and less intensively used bones have lower growth rates and a higher number of these resting lines. Due to the scarcity of annuli/LAGs, the reconstruction of the life history of Dysalotosaurus was carried out using regularly developed and alternating slow and fast growing zones. Dysalotosaurus was a precocial dinosaur, which experienced sexual maturity at ten years, had an indeterminate growth pattern, and maximum growth rates comparable to a large kangaroo. Conclusions/Significance The variation in the bone histology of Dysalotosaurus demonstrates the influence of size, utilization, and shape of bones on relative growth rates. Annuli/LAGs are not the only type of annual growth cycles that can be used to reconstruct the life history of fossil vertebrates, but the degree of development of these lines may be of importance for the reconstruction of paleobehavior. The regular development of annuli/LAGs in subadults and adults of large ornithopods therefore reflects higher seasonal stress due to higher food demands, migration, and altricial breeding behavior. Small ornithopods often lack regularly developed annuli/LAGs due to lower food demands, no need for migration, and precocial behavior. PMID:22238683

Long-term ERT monitoring of biogeochemical changes of an aged hydrocarbon contamination.

PubMed

Caterina, David; Flores Orozco, Adrian; Nguyen, Frédéric

2017-06-01

Adequate management of contaminated sites requires information with improved spatio-temporal resolution, in particular to assess bio-geochemical processes, such as the transformation and degradation of contaminants, precipitation of minerals or changes in groundwater geochemistry occurring during and after remediation procedures. Electrical Resistivity Tomography (ERT), a geophysical method sensitive to pore-fluid and pore-geometry properties, permits to gain quasi-continuous information about subsurface properties in real-time and has been consequently widely used for the characterization of hydrocarbon-impacted sediments. However, its application for the long-term monitoring of processes accompanying natural or engineered bioremediation is still difficult due to the poor understanding of the role that biogeochemical processes play in the electrical signatures. For in-situ studies, the task is further complicated by the variable signal-to-noise ratio and the variations of environmental parameters leading to resolution changes in the electrical images. In this work, we present ERT imaging results for data collected over a period of two years on a site affected by a diesel fuel contamination and undergoing bioremediation. We report low electrical resistivity anomalies in areas associated to the highest contaminant concentrations likely due transformations of the contaminant due to microbial activity and accompanying release of metabolic products. We also report large seasonal variations of the bulk electrical resistivity in the contaminated areas in correlation with temperature and groundwater level fluctuations. However, the amplitude of bulk electrical resistivity variations largely exceeds the amplitude expected given existing petrophysical models. Our results suggest that the variations in electrical properties are mainly controlled by microbial activity which in turn depends on soil temperature and hydrogeological conditions. Therefore, ERT can be suggested as a promising tool to track microbial activity during bioremediation even though further research is still needed to completely understand the bio-geochemical processes involved and their impact on electrical signatures. Copyright © 2017 Elsevier B.V. All rights reserved.

Long-term ERT monitoring of biogeochemical changes of an aged hydrocarbon contamination

NASA Astrophysics Data System (ADS)

Caterina, David; Flores Orozco, Adrian; Nguyen, Frédéric

2017-06-01

Adequate management of contaminated sites requires information with improved spatio-temporal resolution, in particular to assess bio-geochemical processes, such as the transformation and degradation of contaminants, precipitation of minerals or changes in groundwater geochemistry occurring during and after remediation procedures. Electrical Resistivity Tomography (ERT), a geophysical method sensitive to pore-fluid and pore-geometry properties, permits to gain quasi-continuous information about subsurface properties in real-time and has been consequently widely used for the characterization of hydrocarbon-impacted sediments. However, its application for the long-term monitoring of processes accompanying natural or engineered bioremediation is still difficult due to the poor understanding of the role that biogeochemical processes play in the electrical signatures. For in-situ studies, the task is further complicated by the variable signal-to-noise ratio and the variations of environmental parameters leading to resolution changes in the electrical images. In this work, we present ERT imaging results for data collected over a period of two years on a site affected by a diesel fuel contamination and undergoing bioremediation. We report low electrical resistivity anomalies in areas associated to the highest contaminant concentrations likely due transformations of the contaminant due to microbial activity and accompanying release of metabolic products. We also report large seasonal variations of the bulk electrical resistivity in the contaminated areas in correlation with temperature and groundwater level fluctuations. However, the amplitude of bulk electrical resistivity variations largely exceeds the amplitude expected given existing petrophysical models. Our results suggest that the variations in electrical properties are mainly controlled by microbial activity which in turn depends on soil temperature and hydrogeological conditions. Therefore, ERT can be suggested as a promising tool to track microbial activity during bioremediation even though further research is still needed to completely understand the bio-geochemical processes involved and their impact on electrical signatures.

On neoclassical impurity transport in stellarator geometry

NASA Astrophysics Data System (ADS)

García-Regaña, J. M.; Kleiber, R.; Beidler, C. D.; Turkin, Y.; Maaßberg, H.; Helander, P.

2013-07-01

The impurity dynamics in stellarators has become an issue of moderate concern due to the inherent tendency of the impurities to accumulate in the core when the neoclassical ambipolar radial electric field points radially inwards (ion root regime). This accumulation can lead to collapse of the plasma due to radiative losses, and thus limit high performance plasma discharges in non-axisymmetric devices. A quantitative description of the neoclassical impurity transport is complicated by the breakdown of the assumption of small E × B drift and trapping due to the electrostatic potential variation on a flux surface \\tilde{\\Phi} compared with those due to the magnetic field gradient. This work examines the impact of this potential variation on neoclassical impurity transport in the Large Helical Device heliotron. It shows that the neoclassical impurity transport can be strongly affected by \\tilde{\\Phi} . The central numerical tool used is the δf particle in cell Monte Carlo code EUTERPE. The \\tilde{\\Phi} used in the calculations is provided by the neoclassical code GSRAKE. The possibility of obtaining a more general \\tilde{\\Phi} self-consistently with EUTERPE is also addressed and a preliminary calculation is presented.

The influence of thermal inertia on Mars' seasonal pressure variation and the effect of the weather component

NASA Technical Reports Server (NTRS)

Wood, S. E.; Paige, D. A.

1993-01-01

Using a Leighton-Murray type diurnal and seasonal Mars thermal model, we found that it is possible to reproduce the seasonal variation in daily-averaged pressures (approximately 680-890 Pa) measured by Viking Lander 1 (VL1), during years without global dust storms, with a standard deviation of less than 5 Pa. In this simple model, surface CO2, frost condensation, and sublimation rates at each latitude are determined by the net effects of radiation, latent heat, and heat conduction in subsurface soil layers. An inherent assumption of our model is that the seasonal pressure variation is due entirely to the exchange of mass between the atmosphere and polar caps. However, the results of recent Mars GCM modeling have made it clear that there is a significant dynamical contribution to the seasonal pressure variation. This 'weather' component is primarily due to large-scale changes in atmospheric circulation, and its magnitude depends somewhat on the dust content of the atmosphere. The overall form of the theoretical weather component at the location of VL1, as calculated by the AMES GCM, remains the same over the typical range of Mars dust opacities.

Judgment of Daytime Sleepiness in Self-Reported Short, Long and Midrange Sleepers

ERIC Educational Resources Information Center

Mairesse, Olivier; Neu, Daniel; Migeotte, Pierre-Francois; Pattyn, Nathalie; Hofmans, Joeri; Theuns, Peter; Cluydts, Raymond; De Valck, Elke

2012-01-01

Sleep-wake behavior, as well as sleepiness, is regulated by the joint action of an exponentially increasing drive for sleep--sleep homeostasis--and by variations in sleep propensity due to a biological circadian oscillator. However, large inter-individual differences remain. Short and long sleepers have been known to differ in the amount of…

Evaluating reserves for species richness and representation in northern California

Treesearch

Jeffrey R. Dunk; William J. Zielinski; Hartwell Jr. Welsh

2006-01-01

The Klamath-Siskiyou forests of northern California and southern Oregon are recognized as an area of globally outstanding biological distinctiveness. When evaluated at a national or global level, this region is often, necessarily, considered to be uniformly diverse. Due to large variation in biotic and abiotic variables throughout this region, however, it is unlikely...

CYP7A1-rs3808607 and APOE isoform associate with LDL cholesterol lowering after plant sterol consumption in a randomized clinical trial

USDA-ARS?s Scientific Manuscript database

The benefits of plant sterols (PS) for cholesterol lowering are hampered by large heterogeneity across individuals, potentially due to genetic polymorphisms. We investigated the impact of candidate genetic variations on cholesterol response to PS, in a trial which recruited individuals with high or ...

High-resolution observations of combustion in heterogeneous surface fuels

Treesearch

E. Louise Loudermilk; Gary L. Achtemeier; Joseph J. O' Brien; J. Kevin Hiers; Benjamin S. Hornsby

2014-01-01

In ecosystems with frequent surface fires, fire and fuel heterogeneity at relevant scales have been largely ignored. This could be because complete burns give an impression of homogeneity, or due to the difficulty in capturing fine-scale variation in fuel characteristics and fire behaviour. Fire movement between patches of fuel can have implications for modelling fire...

FEM modeling of postseismic deformation of poroelastic material

NASA Astrophysics Data System (ADS)

Kawamoto, S.; Ito, T.; Hirahara, K.

2004-12-01

Following a large earthquake, postseismic deformation in the focal region has been observed by GPS, leveling measurements and the other geodetic measurements. To explain the postseismic deformation, researchers have proposed and well investigated two physical mechanisms of afterslip and viscoelastic relaxation. In some cases, however, there have been observed postseismic deformation which can not be explained by these mechanisms. Therefore, another mechanism has been proposed, where the crust is treated as "poroelastic material". This concept is called "poroelasticity". In this concept, postseismic deformation is caused by pore fluid flow due to the coseismic stress redistribution. We explored, therefore, the postseismic deformation due to pore fluid flow in a poroelastic material using finite element method (FEM), which can easily handle lateral variations of hydraulic diffusivity and elastic or plastic property. We used the FEM program 'CAMBIOT3D' originally developed by Geotech. Lab. Gunma University, Japan (2003). Because this program was developed for soil mechanics, we must have modified so as to calculate deformation due to earthquake faulting. We implemented the 'split node technique' (Melosh and Refsky, 1981) to calculate the coseismic deformation. In addition to this, we modified the program to calculate the deformation taking into account the Skempton's B. This coefficient B determines what fraction of the coseismic stress due to an earthquake is allotted to pore pressure. Without Skempton's B, coseismic pore pressure becomes too large and hence postseismic deformation is calculated too large. We evaluated the postseismic deformation in a poroelastic material to show that the poroelastic deformation is quite different from that of afterslip and viscoelastic relaxation models. In this presentation, we show the postseismic deformation due to pore fluids flow in a poroelastic material and the effect of Skempton's B. Especially, we discuss what different pattern of postseismic deformation is produced depending on the lateral variation of hydraulic diffusivity structures in and around the fault zone, which structures have been differently inferred from fault zone core sampling researches and so on.

Robust Optical Recognition of Cursive Pashto Script Using Scale, Rotation and Location Invariant Approach

PubMed Central

Ahmad, Riaz; Naz, Saeeda; Afzal, Muhammad Zeshan; Amin, Sayed Hassan; Breuel, Thomas

2015-01-01

The presence of a large number of unique shapes called ligatures in cursive languages, along with variations due to scaling, orientation and location provides one of the most challenging pattern recognition problems. Recognition of the large number of ligatures is often a complicated task in oriental languages such as Pashto, Urdu, Persian and Arabic. Research on cursive script recognition often ignores the fact that scaling, orientation, location and font variations are common in printed cursive text. Therefore, these variations are not included in image databases and in experimental evaluations. This research uncovers challenges faced by Arabic cursive script recognition in a holistic framework by considering Pashto as a test case, because Pashto language has larger alphabet set than Arabic, Persian and Urdu. A database containing 8000 images of 1000 unique ligatures having scaling, orientation and location variations is introduced. In this article, a feature space based on scale invariant feature transform (SIFT) along with a segmentation framework has been proposed for overcoming the above mentioned challenges. The experimental results show a significantly improved performance of proposed scheme over traditional feature extraction techniques such as principal component analysis (PCA). PMID:26368566

Strain distribution in an Si single crystal measured by interference fringes of X-ray mirage diffraction

PubMed Central

Jongsukswat, Sukswat; Fukamachi, Tomoe; Ju, Dongying; Negishi, Riichirou; Hirano, Keiichi; Kawamura, Takaaki

2013-01-01

In X-ray interference fringes accompanied by mirage diffraction, variations have been observed in the spacing and position of the fringes from a plane-parallel Si single crystal fixed at one end as a function of distance from the incident plane of the X-rays to the free crystal end. The variations can be explained by distortion of the sample crystal due to gravity. From the variations and positions of the fringes, the strain gradient of the crystal has been determined. The distribution of the observed strain agrees with that expected from rod theory except for residual strain. When the distortion is large, the observed strain distribution does not agree with that expected from rod theory. PMID:24068841

Self-compensating design for reduction of timing and leakage sensitivity to systematic pattern dependent variation

NASA Astrophysics Data System (ADS)

Gupta, Puneet; Kahng, Andrew B.; Kim, Youngmin; Sylvester, Dennis

2006-03-01

Focus is one of the major sources of linewidth variation. CD variation caused by defocus is largely systematic after the layout is finished. In particular, dense lines "smile" through focus while isolated lines "frown" in typical Bossung plots. This well-defined systematic behavior of focus-dependent CD variation allows us to develop a self-compensating design methodology. In this work, we propose a novel design methodology that allows explicit compensation of focus-dependent CD variation, either within a cell (self-compensated cells) or across cells in a critical path (self-compensated design). By creating iso and dense variants for each library cell, we can achieve designs that are more robust to focus variation. Optimization with a mixture of iso and dense cell variants is possible both for area and leakage power, with the latter providing an interesting complement to existing leakage reduction techniques such as dual-Vth. We implement both heuristic and Mixed-Integer Linear Programming (MILP) solution methods to address this optimization, and experimentally compare their results. Our results indicate that designing with a self-compensated cell library incurs ~12% area penalty and ~6% leakage increase over original layouts while compensating for focus-dependent CD variation (i.e., the design meets timing constraints across a large range of focus variation). We observe ~27% area penalty and ~7% leakage increase at the worst-case defocus condition using only single-pitch cells. The area penalty of circuits after using either the heuristic or MILP optimization approach is reduced to ~3% while maintaining timing. We also apply our optimizations to leakage, which traditionally shows very large variability due to its exponential relationship with gate CD. We conclude that a mixed iso/dense library combined with a sensitivity-based optimization approach yields much better area/timing/leakage tradeoffs than using a self-compensated cell library alone. Self-compensated design shows an average of 25% leakage reduction at the worst defocus condition for the benchmark designs that we have studied.

Hungarian Marfan family with large FBN1 deletion calls attention to copy number variation detection in the current NGS era

PubMed Central

Ágg, Bence; Meienberg, Janine; Kopps, Anna M.; Fattorini, Nathalie; Stengl, Roland; Daradics, Noémi; Pólos, Miklós; Bors, András; Radovits, Tamás; Merkely, Béla; De Backer, Julie; Szabolcs, Zoltán; Mátyás, Gábor

2018-01-01

Copy number variations (CNVs) comprise about 10% of reported disease-causing mutations in Mendelian disorders. Nevertheless, pathogenic CNVs may have been under-detected due to the lack or insufficient use of appropriate detection methods. In this report, on the example of the diagnostic odyssey of a patient with Marfan syndrome (MFS) harboring a hitherto unreported 32-kb FBN1 deletion, we highlight the need for and the feasibility of testing for CNVs (>1 kb) in Mendelian disorders in the current next-generation sequencing (NGS) era. PMID:29850152

High-speed peak matching algorithm for retention time alignment of gas chromatographic data for chemometric analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Kevin J.; Wright, Bob W.; Jarman, Kristin H.

2003-05-09

A rapid retention time alignment algorithm was developed as a preprocessing utility to be used prior to chemometric analysis of large datasets of diesel fuel gas chromatographic profiles. Retention time variation from chromatogram-to-chromatogram has been a significant impediment against the use of chemometric techniques in the analysis of chromatographic data due to the inability of current multivariate techniques to correctly model information that shifts from variable to variable within a dataset. The algorithm developed is shown to increase the efficacy of pattern recognition methods applied to a set of diesel fuel chromatograms by retaining chemical selectivity while reducing chromatogram-to-chromatogram retentionmore » time variations and to do so on a time scale that makes analysis of large sets of chromatographic data practical.« less

An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people

PubMed Central

Nelson, Matthew R.; Wegmann, Daniel; Ehm, Margaret G.; Kessner, Darren; St. Jean, Pamela; Verzilli, Claudio; Shen, Judong; Tang, Zhengzheng; Bacanu, Silviu-Alin; Fraser, Dana; Warren, Liling; Aponte, Jennifer; Zawistowski, Matthew; Liu, Xiao; Zhang, Hao; Zhang, Yong; Li, Jun; Li, Yun; Li, Li; Woollard, Peter; Topp, Simon; Hall, Matthew D.; Nangle, Keith; Wang, Jun; Abecasis, Gonçalo; Cardon, Lon R.; Zöllner, Sebastian; Whittaker, John C.; Chissoe, Stephanie L.; Novembre, John; Mooser, Vincent

2015-01-01

Rare genetic variants contribute to complex disease risk; however, the abundance of rare variants in human populations remains unknown. We explored this spectrum of variation by sequencing 202 genes encoding drug targets in 14,002 individuals. We find rare variants are abundant (one every 17 bases) and geographically localized, such that even with large sample sizes, rare variant catalogs will be largely incomplete. We used the observed patterns of variation to estimate population growth parameters, the proportion of variants in a given frequency class that are putatively deleterious, and mutation rates for each gene. Overall we conclude that, due to rapid population growth and weak purifying selection, human populations harbor an abundance of rare variants, many of which are deleterious and have relevance to understanding disease risk. PMID:22604722

Spatial-temporal variations of seismic noise and their relation to wind, rivers, and basins in central Alaska

NASA Astrophysics Data System (ADS)

Smith, K.; Tape, C.; Bruton, C. P.; West, M. E.

2016-12-01

Continuous seismic recordings-or ambient noise-provide means for time-dependent monitoring of site conditions. Frequency-domain amplitude spectra of seismic recordings can be used to characterize time-dependent variations as a function of period (or frequency). Spatial variations can be characterized by using a set of stations across a large region. We analyze time-dependent ambient noise spectra from stations across central Alaska with three purposes. First, we are interested in monitoring the station performance and quality of a new array (FLATS) of 13 posthole seismometers near the Tanana River in Minto Flats. Second, we want to understand time-dependent threshold levels for earthquake detection: when noise is high, earthquake detections are low. Third, we are interested in identifying the effects of nature and Earth structure on seismic stations at different spatial-temporal scales. Our results show that seismic stations are sensitive to variations in wind speed and river flow. Correlations between wind speed and long-period (>10 seconds) seismic noise variations are probably due to tilt effects that have been previously documented. We identify a seismic signal at 10 Hz that is present only on stations close (<100 m) to the main channel of the Tanana river. The 10-Hz signal is strongly correlated with river gage height during summer and weakly correlated during the winter, when the river surface is covered in 1 m of ice. Spatial correlations among stations reveal large variations at shorter time scales (days); these could be due to weather anomalies. The amplitude of seismic noise at periods 2-10 s is strongly influenced by the thickness of sediment, which ranges from 0 m at bedrock sites to 6000 m at sites in the deepest part of Nenana basin. Our analysis allows us to better monitor the performance of temporary and permanent seismic stations, and to understand the physical causes of time-dependent noise variations in Alaska. Our findings show that seismic stations near rivers can potentially be used to monitor the flow of the river during summer and during ice-covered winter, raising the possibility for monitoring river ice break-up during April.

Variation in Women's Preferences Regarding Male Facial Masculinity Is Better Explained by Genetic Differences Than by Previously Identified Context-Dependent Effects.

PubMed

Zietsch, Brendan P; Lee, Anthony J; Sherlock, James M; Jern, Patrick

2015-09-01

Women's preferences for masculine versus feminine male faces are highly variable. According to a dominant theory in evolutionary psychology, this variability results from adaptations that optimize preferences by calibrating them to certain contextual factors, including women's self-perceived attractiveness, short- versus long-term relationship orientation, pathogen disgust sensitivity, and stage of the menstrual cycle. The theory does not account for the possible contribution of genetic variation on women's facial masculinity preference. Using a large sample (N = 2,160) of identical and nonidentical female Finnish twins and their siblings, we showed that the proportion of variation in women's preferences regarding male facial masculinity that was attributable to genetic variation (38%) dwarfed the variation due to the combined effect of contextual factors (< 1%). These findings cast doubt on the importance of these context-dependent effects and may suggest a need for refocusing in the field toward understanding the wide genetic variation in these preferences and how this variation relates to the evolution of sexual dimorphism in faces. © The Author(s) 2015.

Estimating variation in stomatal frequency at intra-individual, intra-site, and inter-taxonomic levels in populations of the Leonardoxa africana (Fabaceae) complex over environmental gradients in Cameroon

NASA Astrophysics Data System (ADS)

Finsinger, Walter; Dos Santos, Thibaut; McKey, Doyle

2013-07-01

Variation of stomatal frequency (stomatal density and stomatal index) includes genetically-based, potentially-adaptive variation, and variation due to phenotypic plasticity, the degree of which may be fundamental to the ability to maintain high water-use efficiency and thus to deal with environmental change. We analysed stomatal frequency and morphology (pore length, pore width) in leaves from several individuals from nine populations of four sub-species of the Leonardoxa africana complex. The dataset represents a hierarchical sampling wherein factors are nested within each level (leaves in individuals, individuals in sites, etc.), allowing estimation of the contribution of different levels to overall variation, using variance-component analysis. SI showed significant variation among sites ("site" is largely confounded with "sub-species"), being highest in the sub-species localized in the highest-elevation site. However, most of the observed variance was accounted for at intra-site and intra-individual levels. This variance could reflect great phenotypic plasticity, presumably in response to highly local variation in micro-environmental conditions.

Selecting Magnet Laminations Recipes Using the Meth-od of Sim-u-la-ted Annealing

NASA Astrophysics Data System (ADS)

Russell, A. D.; Baiod, R.; Brown, B. C.; Harding, D. J.; Martin, P. S.

1997-05-01

The Fermilab Main Injector project is building 344 dipoles using more than 7000 tons of steel. Budget and logistical constraints required that steel production, lamination stamping and magnet fabrication proceed in parallel. There were significant run-to-run variations in the magnetic properties of the steel (Martin, P.S., et al., Variations in the Steel Properties and the Excitation Characteristics of FMI Dipoles, this conference). The large lamination size (>0.5 m coil opening) resulted in variations of gap height due to differences in stress relief in the steel after stamping. To minimize magnet-to-magnet strength and field shape variations the laminations were shuffled based on the available magnetic and mechanical data and assigned to magnets using a computer program based on the method of simulated annealing. The lamination sets selected by the program have produced magnets which easily satisfy the design requirements. Variations of the average magnet gap are an order of magnitude smaller than the variations in lamination gaps. This paper discusses observed gap variations, the program structure and the strength uniformity results.

Establishment of the U.S. castor (Ricinus communis L.) core collection using seed chemical composition analysis and genotyping with EST-SSR markers

USDA-ARS?s Scientific Manuscript database

Natural genetic variation exists in the plant germplasm collections. Normally the germplasm collection for a specific species encompasses many accessions. Due to its large number of accessions, the entire collection is hard to handle and can’t be easily utilized. To facilitate the end-users (such as...

Effects of acorn size and mass on seedling quality of northern red oak (Quercus rubra)

Treesearch

Stacy L. Clark; Scott E. Schlarbaum

2018-01-01

Oaks are not sustainable in many upland temperate forests because of poor recruitment resulting from natural regeneration. Artificial regeneration is an alternative to natural regeneration, but is difficult, in part, due to large variation in seedling quality.  In this study, we examined the effects of acorn size and mass on nursery...

The electrical conductivity of the Earth's upper mantle as estimated from satellite measured magnetic field variations. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Didwall, E. M.

1981-01-01

Low latitude magnetic field variations (magnetic storms) caused by large fluctuations in the equatorial ring current were derived from magnetic field magnitude data obtained by OGO 2, 4, and 6 satellites over an almost 5 year period. Analysis procedures consisted of (1) separating the disturbance field into internal and external parts relative to the surface of the Earth; (2) estimating the response function which related to the internally generated magnetic field variations to the external variations due to the ring current; and (3) interpreting the estimated response function using theoretical response functions for known conductivity profiles. Special consideration is given to possible ocean effects. A temperature profile is proposed using conductivity temperature data for single crystal olivine. The resulting temperature profile is reasonable for depths below 150-200 km, but is too high for shallower depths. Apparently, conductivity is not controlled solely by olivine at shallow depths.

The plasma environment, charge state, and currents of Saturn's C and D rings

NASA Technical Reports Server (NTRS)

Wilson, G. R.

1991-01-01

The charge state and associated currents of Saturn's C an D rings are studied by modeling the flow of ionospheric plasma from the mid- to low-latitude ionosphere to the vicinity of the rings. It is found that the plasma density near the C and D rings, at a given radial location, will experience a one to two order of magnitude diurnal variation. The surface charge density (SCD) of these rings can show significant radial and azimuthal variations due mainly to variation in the plasma density. The SCD also depends on structural features of the rings such as thickness and the nature of the particle size distribution. The associated azimuthal currents carried by these rings also show large diurnal variations resulting in field-aligned currents which close in the ionosphere. The resulting ionospheric electric field will probably not produce a significant amount of plasma convection in the topside ionosphere and inner plasmasphere.

RNA-seq: technical variability and sampling

PubMed Central

2011-01-01

Background RNA-seq is revolutionizing the way we study transcriptomes. mRNA can be surveyed without prior knowledge of gene transcripts. Alternative splicing of transcript isoforms and the identification of previously unknown exons are being reported. Initial reports of differences in exon usage, and splicing between samples as well as quantitative differences among samples are beginning to surface. Biological variation has been reported to be larger than technical variation. In addition, technical variation has been reported to be in line with expectations due to random sampling. However, strategies for dealing with technical variation will differ depending on the magnitude. The size of technical variance, and the role of sampling are examined in this manuscript. Results In this study three independent Solexa/Illumina experiments containing technical replicates are analyzed. When coverage is low, large disagreements between technical replicates are apparent. Exon detection between technical replicates is highly variable when the coverage is less than 5 reads per nucleotide and estimates of gene expression are more likely to disagree when coverage is low. Although large disagreements in the estimates of expression are observed at all levels of coverage. Conclusions Technical variability is too high to ignore. Technical variability results in inconsistent detection of exons at low levels of coverage. Further, the estimate of the relative abundance of a transcript can substantially disagree, even when coverage levels are high. This may be due to the low sampling fraction and if so, it will persist as an issue needing to be addressed in experimental design even as the next wave of technology produces larger numbers of reads. We provide practical recommendations for dealing with the technical variability, without dramatic cost increases. PMID:21645359

High-resolution determination of the stress in individual interconnect lines and the variation due to electromigration

NASA Astrophysics Data System (ADS)

Ma, Qing; Chiras, S.; Clarke, D. R.; Suo, Z.

1995-08-01

Large tensile stresses usually exist in metallic interconnect lines on silicon substrates as a result of thermal mismatch. When a current is subsequently passed any divergence of atomic flux can create superimposed stress variations along the line. Together, these stresses can significantly influence the growth of voids and therefore affect interconnect reliability. In this work, a high-resolution (˜2 μm) optical spectroscopy method has been used to measure the localized stresses around passivated aluminum lines on a silicon wafer, both as-fabricated and after electromigration testing. The method is based on the piezospectroscopic properties of silicon, specifically the frequency shift of the Raman line at 520 R cm-1. By focusing a laser beam at points adjacent to the aluminum lines, the Raman signal was excited and collected. The stresses in the aluminum lines can then be derived from the stresses in the silicon using finite element methods. Large variations of stress along an electromigration-tested line were observed and compared to a theoretical model based on differences in effective diffusivities from grain to grain in a polycrystalline interconnect line.

Spectral (optical) and mechanical responses of fresh and cryopreserved issued arteries

NASA Astrophysics Data System (ADS)

Pery, Emilie; Blondel, Walter C.; Goebel, Jean-Christophe; Didelon, Jacques; Guillemin, Francois

2005-04-01

Cryopreservation is the only method for conserving blood vessels as future allografts with biological immunity controls. Although it affects vessels mechanical structure, no biomechanical integrity simple test is available today. Biological tissues optical properties characterization by spectroscopic methods is of interest due to their types or natures variations. Collected data complementarity contributes to "photodiagnosis" applicative prospects (cancer, vascular...). Pig carotid artery rings were tested after excision and after one month cryopreservation. An uniaxial mechanical testing device was used for ring stretching, and elongation and axial forces measurement. Circumferential large strains and stresses were calculated. Simultaneously, each artery ring optical characteristics was measured using fibered autofluorescence and elastic scattering spectrometers. Mechanical results showed nonlinear strain/stress curves and large deformations in good agreement with other referenced works. Significant differences (p<0.05) between fresh and cryopreserved rings mechanical properties were noticed. Elastic scattering spectra intensity variations were well correlated with artery mechanical properties. The standardized autofluorescence spectra were more clearly correlated with anatomo-histological changes due to cryopreservation, providing rather accurate differentiation between fresh and cryopreserved samples. This study offers a new perspective to detect changes of cryopreserved arterial samples mechanical properties. Coupling mechanical tests (uniaxial traction of arterial rings) and optical spectroscopic measurements (autofluorescence, elastic scattering) is the driving point: it allows correlating mechanical modifications and spectral variations of artery rings before and after cryopreservation. Ultimately, this new approach could help developping a device allowing non-invasive, atraumatic and contactless optical examinations of arterial graft to assess its mechanical state before reimplantation.

Sound production due to large-scale coherent structures

NASA Technical Reports Server (NTRS)

Gatski, T. B.

1979-01-01

The acoustic pressure fluctuations due to large-scale finite amplitude disturbances in a free turbulent shear flow are calculated. The flow is decomposed into three component scales; the mean motion, the large-scale wave-like disturbance, and the small-scale random turbulence. The effect of the large-scale structure on the flow is isolated by applying both a spatial and phase average on the governing differential equations and by initially taking the small-scale turbulence to be in energetic equilibrium with the mean flow. The subsequent temporal evolution of the flow is computed from global energetic rate equations for the different component scales. Lighthill's theory is then applied to the region with the flowfield as the source and an observer located outside the flowfield in a region of uniform velocity. Since the time history of all flow variables is known, a minimum of simplifying assumptions for the Lighthill stress tensor is required, including no far-field approximations. A phase average is used to isolate the pressure fluctuations due to the large-scale structure, and also to isolate the dynamic process responsible. Variation of mean square pressure with distance from the source is computed to determine the acoustic far-field location and decay rate, and, in addition, spectra at various acoustic field locations are computed and analyzed. Also included are the effects of varying the growth and decay of the large-scale disturbance on the sound produced.

Optimization of radar imaging system parameters for geological analysis

NASA Technical Reports Server (NTRS)

Waite, W. P.; Macdonald, H. C.; Kaupp, V. H.

1981-01-01

The use of radar image simulation to model terrain variation and determine optimum sensor parameters for geological analysis is described. Optimum incidence angle is determined by the simulation, which evaluates separately the discrimination of surface features possible due to terrain geometry and that due to terrain scattering. Depending on the relative relief, slope, and scattering cross section, optimum incidence angle may vary from 20 to 80 degrees. Large incident angle imagery (more than 60 deg) is best for the widest range of geological applications, but in many cases these large angles cannot be achieved by satellite systems. Low relief regions require low incidence angles (less than 30 deg), so a satellite system serving a broad range of applications should have at least two selectable angles of incidence.

Derivation of GPS TEC and receiver bias for Langkawi station in Malaysia

NASA Astrophysics Data System (ADS)

Teh, W. L.; Chen, W. S.; Abdullah, M.

2017-05-01

This paper presents the polynomial-type TEC model to derive total electron content (TEC) and receiver bias for Langkawi (LGKW) station in Malaysia at geographic latitude of 6.32° and longitude of 99.85°. The model uses a polynomial function of coordinates of the ionospheric piercing point to describe the TEC distribution in space. In the model, six polynomial coefficients and a receiver bias are unknown which can be solved by the least squares method. A reasonable agreement is achieved for the derivation of TEC and receiver bias for IENG station in Italy, as compared with that derived by the IGS analysis center, CODE. We process one year of LGKW data in 2010 and show the monthly receiver bias and the seasonal TEC variation. The monthly receiver bias varies between -48 and -24 TECu (1016 electrons/m2), with the mean value at -37 TECu. Large variations happen in the monthly receiver biases due to the low data coverage of high satellite elevation angle (60° < α ≤ 90°). Post-processing TEC approach is implemented which can resolve the wavy pattern of the monthly TEC baseline resulted from the large variation of the receiver bias. The seasonal TEC variation at LGKW exhibits a semi-annual variation, where the peak occurs during equinoctial months, and the trough during summer and winter months.

Variable sexually dimorphic gene expression in laboratory strains of Drosophila melanogaster.

PubMed

Baker, Dean A; Meadows, Lisa A; Wang, Jing; Dow, Julian At; Russell, Steven

2007-12-10

Wild-type laboratory strains of model organisms are typically kept in isolation for many years, with the action of genetic drift and selection on mutational variation causing lineages to diverge with time. Natural populations from which such strains are established, show that gender-specific interactions in particular drive many aspects of sequence level and transcriptional level variation. Here, our goal was to identify genes that display transcriptional variation between laboratory strains of Drosophila melanogaster, and to explore evidence of gender-biased interactions underlying that variability. Transcriptional variation among the laboratory genotypes studied occurs more frequently in males than in females. Qualitative differences are also apparent to suggest that genes within particular functional classes disproportionately display variation in gene expression. Our analysis indicates that genes with reproductive functions are most often divergent between genotypes in both sexes, however a large proportion of female variation can also be attributed to genes without expression in the ovaries. The present study clearly shows that transcriptional variation between common laboratory strains of Drosophila can differ dramatically due to sexual dimorphism. Much of this variation reflects sex-specific challenges associated with divergent physiological trade-offs, morphology and regulatory pathways operating within males and females.

The devil is in the details: genetic variation in introduced populations and its contributions to invasion.

PubMed

Dlugosch, Katrina M; Anderson, Samantha R; Braasch, Joseph; Cang, F Alice; Gillette, Heather D

2015-05-01

The influence of genetic variation on invasion success has captivated researchers since the start of the field of invasion genetics 50 years ago. We review the history of work on this question and conclude that genetic variation-as surveyed with molecular markers-appears to shape invasion rarely. Instead, there is a significant disconnect between marker assays and ecologically relevant genetic variation in introductions. We argue that the potential for adaptation to facilitate invasion will be shaped by the details of genotypes affecting phenotypes, and we highlight three areas in which we see opportunities to make powerful new insights. (i) The genetic architecture of adaptive variation. Traits shaped by large-effect alleles may be strongly impacted by founder events yet more likely to respond to selection when genetic drift is strong. Large-effect loci may be especially relevant for traits involved in biotic interactions. (ii) Cryptic genetic variation exposed during invasion. Introductions have strong potential to uncover masked variation due to alterations in genetic and ecological environments. (iii) Genetic interactions during admixture of multiple source populations. As divergence among sources increases, positive followed by increasingly negative effects of admixture should be expected. Although generally hypothesized to be beneficial during invasion, admixture is most often reported among sources of intermediate divergence, supporting the possibility that incompatibilities among divergent source populations might be limiting their introgression. Finally, we note that these details of invasion genetics can be coupled with comparative demographic analyses to link genetic changes to the evolution of invasiveness itself. © 2015 John Wiley & Sons Ltd.

Human MHC architecture and evolution: implications for disease association studies

PubMed Central

Traherne, J A

2008-01-01

Major histocompatibility complex (MHC) variation is a key determinant of susceptibility and resistance to a large number of infectious, autoimmune and other diseases. Identification of the MHC variants conferring susceptibility to disease is problematic, due to high levels of variation and linkage disequilibrium. Recent cataloguing and analysis of variation over the complete MHC has facilitated localization of susceptibility loci for autoimmune diseases, and provided insight into the MHC's evolution. This review considers how the unusual genetic characteristics of the MHC impact on strategies to identify variants causing, or contributing to, disease phenotypes. It also considers the MHC in relation to novel mechanisms influencing gene function and regulation, such as epistasis, epigenetics and microRNAs. These developments, along with recent technological advances, shed light on genetic association in complex disease. PMID:18397301

Relationship of D'' structure with the velocity variations near the inner-core boundary

NASA Astrophysics Data System (ADS)

Luo, Sheng-Nian; Ni, Sidao; Helmberger, Don

2002-06-01

Variations in regional differential times between PKiKP (i) and PKIKP (I) have been attributed to hemispheric P-velocity variations of about 1% in the upper 100 km of the inner core (referred to as HIC). The top of the inner core appears relatively fast beneath Asia where D'' is also fast. An alternative interpretation could be the lateral variation in P velocity at the lowermost outer core (HOC) producing the same differential times. To resolve this issue, we introduce the diffracted PKP phase near the B caustic (Bdiff) in the range of 139-145° epicenter distances, and the corresponding differential times between Bdiff and PKiKP and PKIKP as observed on broadband arrays. Due to the long-wavelength nature of Bdiff, we scaled the S-wave tomography model with k values (k ≡ dlnVs/dlnVp) to obtain large-scale P-wave velocity structure in the lower mantle as proposed by earlier studies. Waveform synthetics of Bdiff constructed with small k's predict complex waveforms not commonly observed, confirming the validity of large scaling factor k. With P-velocity in lower mantle constrained at large scale, the extra travel-time constraint imposed by Bdiff helps to resolve the HOC-HIC issue. Our preliminary results suggest k > 2 for the lowermost mantle and support HIC hypothesis. An important implication is that there appears to be a relationship of D'' velocity structures with the structures near the inner core boundary via core dynamics.

Consequences of CCD imperfections for cosmology determined by weak lensing surveys: from laboratory measurements to cosmological parameter bias

DOE Office of Scientific and Technical Information (OSTI.GOV)

Okura, Yuki; Petri, Andrea; May, Morgan

Weak gravitational lensing causes subtle changes in the apparent shapes of galaxies due to the bending of light by the gravity of foreground masses. By measuring the shapes of large numbers of galaxies (millions in recent surveys, up to tens of billions in future surveys) we can infer the parameters that determine cosmology. Imperfections in the detectors used to record images of the sky can introduce changes in the apparent shape of galaxies, which in turn can bias the inferred cosmological parameters. Here in this paper we consider the effect of two widely discussed sensor imperfections: tree-rings, due to impuritymore » gradients which cause transverse electric fields in the Charge-Coupled Devices (CCD), and pixel-size variation, due to periodic CCD fabrication errors. These imperfections can be observed when the detectors are subject to uniform illumination (flat field images). We develop methods to determine the spurious shear and convergence (due to the imperfections) from the flat-field images. We calculate how the spurious shear when added to the lensing shear will bias the determination of cosmological parameters. We apply our methods to candidate sensors of the Large Synoptic Survey Telescope (LSST) as a timely and important example, analyzing flat field images recorded with LSST prototype CCDs in the laboratory. In conclusion, we find that tree-rings and periodic pixel-size variation present in the LSST CCDs will introduce negligible bias to cosmological parameters determined from the lensing power spectrum, specifically w,Ω m and σ 8.« less

Consequences of CCD imperfections for cosmology determined by weak lensing surveys: from laboratory measurements to cosmological parameter bias

DOE PAGES

Okura, Yuki; Petri, Andrea; May, Morgan; ...

2016-06-27

Weak gravitational lensing causes subtle changes in the apparent shapes of galaxies due to the bending of light by the gravity of foreground masses. By measuring the shapes of large numbers of galaxies (millions in recent surveys, up to tens of billions in future surveys) we can infer the parameters that determine cosmology. Imperfections in the detectors used to record images of the sky can introduce changes in the apparent shape of galaxies, which in turn can bias the inferred cosmological parameters. Here in this paper we consider the effect of two widely discussed sensor imperfections: tree-rings, due to impuritymore » gradients which cause transverse electric fields in the Charge-Coupled Devices (CCD), and pixel-size variation, due to periodic CCD fabrication errors. These imperfections can be observed when the detectors are subject to uniform illumination (flat field images). We develop methods to determine the spurious shear and convergence (due to the imperfections) from the flat-field images. We calculate how the spurious shear when added to the lensing shear will bias the determination of cosmological parameters. We apply our methods to candidate sensors of the Large Synoptic Survey Telescope (LSST) as a timely and important example, analyzing flat field images recorded with LSST prototype CCDs in the laboratory. In conclusion, we find that tree-rings and periodic pixel-size variation present in the LSST CCDs will introduce negligible bias to cosmological parameters determined from the lensing power spectrum, specifically w,Ω m and σ 8.« less

Global Precipitation Variations and Long-term Changes Derived from the GPCP Monthly Product

NASA Technical Reports Server (NTRS)

Adler, Robert F.; Gu, Guojun; Huffman, George; Curtis, Scott

2005-01-01

Global and large regional rainfall variations and possible long-term changes are examined using the 25-year (1979-2004) monthly dataset from the Global Precipitation Climatology Project (GPCP). The emphasis is to discriminate among the variations due to ENSO, volcanic events and possible long-term changes. Although the global change of precipitation in the data set is near zero, the data set does indicate an upward trend (0.13 mm/day/25yr) and a downward trend (-0.06 mm/day/25yr) over tropical oceans and lands (25S-25N), respectively. This corresponds to a 4% increase (ocean) and 2% decrease (land) during this time period. Techniques are applied to attempt to eliminate variations due to ENSO and major volcanic eruptions. The impact of the two major volcanic eruptions over the past 25 years is estimated to be about a 5% reduction in tropical rainfall. The modified data set (with ENSO and volcano effect removed) retains the same approximate change slopes, but with reduced variance leading to significance tests with results in the 90-95% range. Inter-comparisons between the GPCP, SSWI (1988-2004), and TRMM (1998-2004) rainfall products are made to increase or decrease confidence in the changes seen in the GPCP analysis.

Gravity monitoring of Tatun Volcanic Group activities and inference for underground fluid circulations

NASA Astrophysics Data System (ADS)

Mouyen, Maxime; Chao, Benjamin Fong; Hwang, Cheinway; Hsieh, Wen-Chi

2016-12-01

The Tatun Volcano Group (TVG), located on the northern coast of Taiwan adjacent to the city of Taipei, experiences active hydrothermalism but has no historical record of volcanic eruption. Yet recent studies suggest that TVG is dormant-active rather than extinct. To monitor mass transfers and to gain further understanding of this volcanic area, gravity variations have been recorded continuously since 2012 using a superconducting gravimeter, and once every few months since 2005 using absolute gravimeters. We analyze the continuous gravity time series and propose a model that best explains the gravity variations due to local groundwater redistribution. By correcting these variations, we identify gravity changes as large as 35 μGal that occurred concomitantly to fluid pressure-induced earthquakes and changes in the gas composition at Dayoukeng, one of TVG's fumaroles, over 2005-2007. We examine several fluid movements that can match the gravity observations, yet too few additional constraints exist to favor any of them. In particular, no significant ground displacements are observed when these gravity variations occurred. On the other hand, the model of gravity changes due to local groundwater redistribution can be routinely computed and removed from the ongoing time gravity measurements in order to quickly identify any unusual mass transfer occurring beneath TVG.

Gravity monitoring of Tatun Volcanic Group activities and inference for underground fluid circulations

NASA Astrophysics Data System (ADS)

Mouyen, Maxime; Chao, Benjamin; Hwang, Cheinway; Hsieh, Wen-Chi

2017-04-01

The Tatun Volcano Group (TVG), located on the northern coast of Taiwan adjacent to the city of Taipei, experiences active hydrothermalism but has no historical record of volcanic eruption. Yet recent studies suggest that TVG is dormant-active rather than extinct. To monitor mass transfers and to gain further understanding of this volcanic area, gravity variations have been recorded continuously since 2012 using a superconducting gravimeter, and once every few months since 2005 using absolute gravimeters. We analyze the continuous gravity time series and propose a model that best explain the gravity variations due to local groundwater redistribution. By correcting these variations, we identify gravity changes as large as 35 µGal that occurred concomitantly to fluid pressure-induced earthquakes and changes in the gas composition at Dayoukeng, one of TVG's fumaroles, over 2005-2007. We examine several fluid movements that can match the gravity observations, yet too few additional constraints exist to favor any of them. In particular, no significant ground displacements are observed when these gravity variations occurred. On the other hand, the model of gravity changes due to local groundwater redistribution can be routinely computed and removed from the ongoing time gravity measurements in order to quickly identify any unusual mass transfer occurring beneath TVG.

Search for the 700,000-year-old source crater of the Australasian tektite strewn field

NASA Technical Reports Server (NTRS)

Schnetzler, C. C.; Garvin, J. B.

1992-01-01

Many tektite investigations have hypothesized that the impact crater that was the source of the extensive Australasian strewn field lies somewhere in or near Indochina. This is due to variations in abundance and size of tektites across the strewn field, variation of thickness of microtektite layers in ocean cores, nature and ablation characteristics across the field, and, above all, the occurrence of the large, blocky, layered Muong Nong-type tektites in Indochina. A recent study of the location and chemistry of Muong Nong-type and splash-form tektites suggests that the source region can be further narrowed to a limited area in eastern Thailand and southern Loas. Satellite multispectral imagery, a digital elevation dataset, and maps showing drainage patterns were used to search within this area for possible anomalous features that may be large degraded impact craters. Four interesting structures were identified from these datasets, and they are presented.

Large-scale controls of methanogenesis inferred from methane and gravity spaceborne data.

PubMed

Bloom, A Anthony; Palmer, Paul I; Fraser, Annemarie; Reay, David S; Frankenberg, Christian

2010-01-15

Wetlands are the largest individual source of methane (CH4), but the magnitude and distribution of this source are poorly understood on continental scales. We isolated the wetland and rice paddy contributions to spaceborne CH4 measurements over 2003-2005 using satellite observations of gravity anomalies, a proxy for water-table depth Gamma, and surface temperature analyses TS. We find that tropical and higher-latitude CH4 variations are largely described by Gamma and TS variations, respectively. Our work suggests that tropical wetlands contribute 52 to 58% of global emissions, with the remainder coming from the extra-tropics, 2% of which is from Arctic latitudes. We estimate a 7% rise in wetland CH4 emissions over 2003-2007, due to warming of mid-latitude and Arctic wetland regions, which we find is consistent with recent changes in atmospheric CH4.

Inter-Diffusion in the Presence of Free Convection

NASA Technical Reports Server (NTRS)

Gupta, Prabhat K.

1999-01-01

Because of their technological importance, establishment of the precise values of interdiffusion coefficients is important in multicomponent fluid systems. Such values are not available because diffusion is influenced by free convection due to compositionally induced density variations. In this project, earth based diffusion experiments are being performed in a viscous fluid system PbO-SiO2 at temperatures between 500-1000 C. This system is chosen because it shows a large variation in density with small changes in composition and is expected to show a large free convection effect. Infinite diffusion couples at different temperatures and times are being studied with different orientations with respect to gravity. Composition fields will be measured using an Electron Microprobe Analyzer and will be compared with the results of a complementary modeling study to extract the values of the true diffusion coefficient from the measured diffusion profiles.

Large-Scale Controls of Methanogenesis Inferred from Methane and Gravity Spaceborne Data

NASA Astrophysics Data System (ADS)

Bloom, A. Anthony; Palmer, Paul I.; Fraser, Annemarie; Reay, David S.; Frankenberg, Christian

2010-01-01

Wetlands are the largest individual source of methane (CH4), but the magnitude and distribution of this source are poorly understood on continental scales. We isolated the wetland and rice paddy contributions to spaceborne CH4 measurements over 2003-2005 using satellite observations of gravity anomalies, a proxy for water-table depth Γ, and surface temperature analyses TS. We find that tropical and higher-latitude CH4 variations are largely described by Γ and TS variations, respectively. Our work suggests that tropical wetlands contribute 52 to 58% of global emissions, with the remainder coming from the extra-tropics, 2% of which is from Arctic latitudes. We estimate a 7% rise in wetland CH4 emissions over 2003-2007, due to warming of mid-latitude and Arctic wetland regions, which we find is consistent with recent changes in atmospheric CH4.

Epoxidized Natural Rubber/Chitosan Network Binder for Silicon Anode in Lithium-Ion Battery.

PubMed

Lee, Sang Ha; Lee, Jeong Hun; Nam, Dong Ho; Cho, Misuk; Kim, Jaehoon; Chanthad, Chalathorn; Lee, Youngkwan

2018-05-16

Polymeric binder is extremely important for Si-based anode in lithium-ion batteries due to large volume variation during charging/discharging process. Here, natural rubber-incorporated chitosan networks were designed as a binder material to obtain both adhesion and elasticity. Chitosan could strongly anchor Si particles through hydrogen bonding, while the natural rubber could stretch reversibly during the volume variation of Si particles, resulting in high cyclic performance. The prepared electrode exhibited the specific capacities of 1350 mAh/g after 1600 cycles at the current density of 8 A/g and 2310 mAh/g after 500 cycles at the current density of 1 A/g. Furthermore, the cycle test with limiting lithiation capacity was conducted to study the optimal binder properties at varying degree of the volume expansion of silicon, and it was found that the elastic property of binder material was strongly required when the large volume expansion of Si occurred.

Statistical variability study of random dopant fluctuation on gate-all-around inversion-mode silicon nanowire field-effect transistors

NASA Astrophysics Data System (ADS)

Yoon, Jun-Sik; Rim, Taiuk; Kim, Jungsik; Kim, Kihyun; Baek, Chang-Ki; Jeong, Yoon-Ha

2015-03-01

Random dopant fluctuation effects of gate-all-around inversion-mode silicon nanowire field-effect transistors (FETs) with different diameters and extension lengths are investigated. The nanowire FETs with smaller diameter and longer extension length reduce average values and variations of subthreshold swing and drain-induced barrier lowering, thus improving short channel immunity. Relative variations of the drain currents increase as the diameter decreases because of decreased current drivability from narrower channel cross-sections. Absolute variations of the drain currents decrease critically as the extension length increases due to decreasing the number of arsenic dopants penetrating into the channel region. To understand variability origins of the drain currents, variations of source/drain series resistance and low-field mobility are investigated. All these two parameters affect the variations of the drain currents concurrently. The nanowire FETs having extension lengths sufficient to prevent dopant penetration into the channel regions and maintaining relatively large cross-sections are suggested to achieve suitable short channel immunity and small variations of the drain currents.

Relations among low ionosphere parameters and high frequency radio wave absorption

NASA Technical Reports Server (NTRS)

Cipriano, J. P.

1973-01-01

Charged particle conductivities measured in the very low ionosphere at White Sands Missile Range, New Mexico, and Wallops Island, Virginia, are compared with atmospheric parameters and high frequency radio wave absorption measurements. Charged particle densities are derived from the conductivity data. Between 33 and 58 km, positive conductivity correlated well with neutral atmospheric temperature, with temperature coefficients as large as 4.6%/deg K. Good correlations were also found between HF radio wave absorption and negative conductivity at altitudes as low as 53 km, indicating that the day-to-day absorption variations were principally due to variations in electron loss rate.

Decomposing functional trait associations in a Chinese subtropical forest

PubMed Central

Pei, Kequan; Kéry, Marc; Niklaus, Pascal A.; Schmid, Bernhard

2017-01-01

Functional traits, properties of organisms correlated with ecological performance, play a central role in plant community assembly and functioning. To some extents, functional traits vary in concert, reflecting fundamental ecological strategies. While “trait syndromes” characteristic of e.g. fast-growing, early-successional vs. competitive, late-successional species are recognized in principle, less is known about the environmental and genetic factors at the source of trait variation and covariation within plant communities. We studied the three leaf traits leaf half-life (LHL), leaf mass per area (LMA) and nitrogen concentration in green leaves (Ngreen) and the wood trait wood density (WD) in 294 individuals belonging to 45 tree or shrub species in a Chinese subtropical forest from September 2006 to January 2009. Using multilevel ANOVA and decomposition of sums of products, we estimated the amount of trait variation and covariation among species (mainly genetic causes), i.e. plant functional type (deciduous vs. evergreen species), growth form (tree vs. shrub species), family/genus/species differences, and within species (mainly environmental causes), i.e. individual and season. For single traits, the variation between functional types and among species within functional types was large, but only LMA and Ngreen varied significantly among families and thus showed phylogenetic signal. Trait variation among individuals within species was small, but large temporal variation due to seasonal effects was found within individuals. We did not find any trait variation related to soil conditions underneath the measured individuals. For pairs of traits, variation between functional types and among species within functional types was large, reflecting a strong evolutionary coordination of the traits, with LMA, LHL and WD being positively correlated among each other and negatively with Ngreen. This integration of traits was consistent with a putative stem-leaf economics spectrum ranging from deciduous species with thin, high-nitrogen leaves and low-density wood to evergreen species with thick, low-nitrogen leaves and dense wood and was not influenced by phylogenetic history. Trait coordination within species was weak, allowing individual trees to deviate from the interspecific trait coordination and thus respond flexibly to environmental heterogeneity. Our findings suggest that within a single woody plant community variation and covariation in functional traits allows a large number of species to co-exist and cover a broad spectrum of multivariate niche space, which in turn may increase total resource extraction by the community and community functioning. PMID:28419169

Global Distribution of Density Irregularities in the Equatorial Ionosphere

NASA Technical Reports Server (NTRS)

Kil, Hyosub; Heelis, R. A.

1998-01-01

We analyzed measurements of ion number density made by the retarding potential analyzer aboard the Atmosphere Explorer-E (AE-E) satellite, which was in an approximately circular orbit at an altitude near 300 km in 1977 and later at an altitude near 400 km. Large-scale (greater than 60 km) density measurements in the high-altitude regions show large depletions of bubble-like structures which are confined to narrow local time longitude, and magnetic latitude ranges, while those in the low-altitude regions show relatively small depletions which are broadly distributed,in space. For this reason we considered the altitude regions below 300 km and above 350 km and investigated the global distribution of irregularities using the rms deviation delta N/N over a path length of 18 km as an indicator of overall irregularity intensity. Seasonal variations of irregularity occurrence probability are significant in the Pacific regions, while the occurrence probability is always high in die Atlantic-African regions and is always low in die Indian regions. We find that the high occurrence probability in the Pacific regions is associated with isolated bubble structures, while that near 0 deg longitude is produced by large depictions with bubble structures which are superimposed on a large-scale wave-like background. Considerations of longitude variations due to seeding mechanisms and due to F region winds and drifts are necessary to adequately explain the observations at low and high altitudes. Seeding effects are most obvious near 0 deg longitude, while the most easily observed effect of the F region is the suppression of irregularity growth by interhemispheric neutral winds.

A robust and high-performance queue management controller for large round trip time networks

NASA Astrophysics Data System (ADS)

Khoshnevisan, Ladan; Salmasi, Farzad R.

2016-05-01

Congestion management for transmission control protocol is of utmost importance to prevent packet loss within a network. This necessitates strategies for active queue management. The most applied active queue management strategies have their inherent disadvantages which lead to suboptimal performance and even instability in the case of large round trip time and/or external disturbance. This paper presents an internal model control robust queue management scheme with two degrees of freedom in order to restrict the undesired effects of large and small round trip time and parameter variations in the queue management. Conventional approaches such as proportional integral and random early detection procedures lead to unstable behaviour due to large delay. Moreover, internal model control-Smith scheme suffers from large oscillations due to the large round trip time. On the other hand, other schemes such as internal model control-proportional integral and derivative show excessive sluggish performance for small round trip time values. To overcome these shortcomings, we introduce a system entailing two individual controllers for queue management and disturbance rejection, simultaneously. Simulation results based on Matlab/Simulink and also Network Simulator 2 (NS2) demonstrate the effectiveness of the procedure and verify the analytical approach.

Ecophysiology and genetic variation in domestication of Sphaeralcea and Shepherdia species for the Intermountain West

Treesearch

Chalita Sriladda

2011-01-01

Low-water landscaping is an essential tool for water conservation in the arid Intermountain West (IMW) for managing limited supplies and population-driven increased demand. The IMW harbors a large number of drought-tolerant native species that have potential for use in the low-water use landscape (LWL). However, many species are not available in the nursery trade due...

Meta-analysis of genome wide association studies for the stature of cattle reveals numerous common genes that regulate size in mammals

USDA-ARS?s Scientific Manuscript database

Stature is affected by many polymorphisms of small effect in humans but in contrast variation in dogs, even within breeds is largely due to variants in six genes. Here we use data from cattle to compare genetic architecture of stature to that in humans and dogs. We conducted a meta-analysis for stat...

Laterality strength is linked to stress reactivity in Port Jackson sharks (Heterodontus portusjacksoni).

PubMed

Byrnes, Evan E; Vila Pouca, Catarina; Brown, Culum

2016-05-15

Cerebral lateralization is an evolutionarily deep-rooted trait, ubiquitous among the vertebrates and present even in some invertebrates. Despite the advantages of cerebral lateralization in enhancing cognition and facilitating greater social cohesion, large within population laterality variation exists in many animal species. It is proposed that this variation is maintained due links with inter-individual personality trait differences. Here we explored for lateralization in Port Jackson sharks (Heterodontus portusjacksoni) using T-maze turn and rotational swimming tasks. Additionally, we explored for a link between personality traits, boldness and stress reactivity, and cerebral lateralization. Sharks demonstrated large individual and sex biased laterality variation, with females demonstrating greater lateralization than males overall. Stress reactivity, but not boldness, was found to significantly correlate with lateralization strength. Stronger lateralized individuals were more reactive to stress. Demonstrating laterality in elasmobranchs for the first time indicates ancient evolutionary roots of vertebrate lateralization approximately 240 million years old. Greater lateralization in female elasmobranchs may be related enhancing females' ability to process multiple stimuli during mating, which could increase survivability and facilitate insemination. Despite contrasting evidence in teleost fishes, the results of this study suggest that stress reactivity, and other personality traits, may be linked to variation in lateralization. Copyright © 2016 Elsevier B.V. All rights reserved.

Host plant utilization in the comma butterfly: sources of variation and evolutionary implications.

PubMed

Janz, Niklas; Nylin, Sören; Wedell, Nina

1994-09-01

A major challenge in the study of insect-host plant interactions is to understand how the different aspects of offspring performance interact to produce a preference hierarchy in the ovipositing females. In this paper we investigate host plant preference of the polyphagous butterfly Polygonia c-album (Lepidoptera: Nymphalidae) and compare it with several aspects of the life history of its offspring (growth rate, development time, adult size, survival and female fecundity). Females and offspring were tested on four naturally used host plants (Urtica dioica, Ulmus glabra, Salix caprea, and Betula pubescens). There was substantial individual variation in host plant preference, including reversals in rank order, but the differences were largely confined to differences in the ranking of Urtica dioica and S. caprea. Different aspects of performance on these two plants gave conflicting and complementary results, implying a trade-off between short development time on U. dioica, and larger size and higher fecundity on S. caprea. As all performance components showed low individual variation the large variation in host plant preference was interpreted as due to alternative oviposition strategies on the basis of similar 'performance hierarchies'. This indicates that the larval performance component of host-plant utilization may be more conservative to evolutionary change than the preference of ovipositing females. Possible macro-evolutionary implications of this are discussed.

An adaptive and generalizable closed-loop system for control of medically induced coma and other states of anesthesia

NASA Astrophysics Data System (ADS)

Yang, Yuxiao; Shanechi, Maryam M.

2016-12-01

Objective. Design of closed-loop anesthetic delivery (CLAD) systems is an important topic, particularly for medically induced coma, which needs to be maintained for long periods. Current CLADs for medically induced coma require a separate offline experiment for model parameter estimation, which causes interruption in treatment and is difficult to perform. Also, CLADs may exhibit bias due to inherent time-variation and non-stationarity, and may have large infusion rate variations at steady state. Finally, current CLADs lack theoretical performance guarantees. We develop the first adaptive CLAD for medically induced coma, which addresses these limitations. Further, we extend our adaptive system to be generalizable to other states of anesthesia. Approach. We designed general parametric pharmacodynamic, pharmacokinetic and neural observation models with associated guidelines, and derived a novel adaptive controller. We further penalized large steady-state drug infusion rate variations in the controller. We derived theoretical guarantees that the adaptive system has zero steady-state bias. Using simulations that resembled real time-varying and noisy environments, we tested the closed-loop system for control of two different anesthetic states, burst suppression in medically induced coma and unconsciousness in general anesthesia. Main results. In 1200 simulations, the adaptive system achieved precise control of both anesthetic states despite non-stationarity, time-variation, noise, and no initial parameter knowledge. In both cases, the adaptive system performed close to a baseline system that knew the parameters exactly. In contrast, a non-adaptive system resulted in large steady-state bias and error. The adaptive system also resulted in significantly smaller steady-state infusion rate variations compared to prior systems. Significance. These results have significant implications for clinically viable CLAD design for a wide range of anesthetic states, with potential cost-saving and therapeutic benefits.

An adaptive and generalizable closed-loop system for control of medically induced coma and other states of anesthesia.

PubMed

Yang, Yuxiao; Shanechi, Maryam M

2016-12-01

Design of closed-loop anesthetic delivery (CLAD) systems is an important topic, particularly for medically induced coma, which needs to be maintained for long periods. Current CLADs for medically induced coma require a separate offline experiment for model parameter estimation, which causes interruption in treatment and is difficult to perform. Also, CLADs may exhibit bias due to inherent time-variation and non-stationarity, and may have large infusion rate variations at steady state. Finally, current CLADs lack theoretical performance guarantees. We develop the first adaptive CLAD for medically induced coma, which addresses these limitations. Further, we extend our adaptive system to be generalizable to other states of anesthesia. We designed general parametric pharmacodynamic, pharmacokinetic and neural observation models with associated guidelines, and derived a novel adaptive controller. We further penalized large steady-state drug infusion rate variations in the controller. We derived theoretical guarantees that the adaptive system has zero steady-state bias. Using simulations that resembled real time-varying and noisy environments, we tested the closed-loop system for control of two different anesthetic states, burst suppression in medically induced coma and unconsciousness in general anesthesia. In 1200 simulations, the adaptive system achieved precise control of both anesthetic states despite non-stationarity, time-variation, noise, and no initial parameter knowledge. In both cases, the adaptive system performed close to a baseline system that knew the parameters exactly. In contrast, a non-adaptive system resulted in large steady-state bias and error. The adaptive system also resulted in significantly smaller steady-state infusion rate variations compared to prior systems. These results have significant implications for clinically viable CLAD design for a wide range of anesthetic states, with potential cost-saving and therapeutic benefits.

SU-F-T-70: A High Dose Rate Total Skin Electron Irradiation Technique with A Specific Inter-Film Variation Correction Method for Very Large Electron Beam Fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, X; Rosenfield, J; Dong, X

2016-06-15

Purpose: Rotational total skin electron irradiation (RTSEI) is used in the treatment of cutaneous T-cell lymphoma. Due to inter-film uniformity variations the dosimetry measurement of a large electron beam of a very low energy is challenging. This work provides a method to improve the accuracy of flatness and symmetry for a very large treatment field of low electron energy used in dual beam RTSEI. Methods: RTSEI is delivered by dual angles field a gantry of ±20 degrees of 270 to cover the upper and the lower halves of the patient body with acceptable beam uniformity. The field size is inmore » the order of 230cm in vertical height and 120 cm in horizontal width and beam energy is a degraded 6 MeV (6 mm of PMMA spoiler). We utilized parallel plate chambers, Gafchromic films and OSLDs as a measuring devices for absolute dose, B-Factor, stationary and rotational percent depth dose and beam uniformity. To reduce inter-film dosimetric variation we introduced a new specific correction method to analyze beam uniformity. This correction method uses some image processing techniques combining film value before and after radiation dose to compensate the inter-variation dose response differences among films. Results: Stationary and rotational depth of dose demonstrated that the Rp is 2 cm for rotational and the maximum dose is shifted toward the surface (3mm). The dosimetry for the phantom showed that dose uniformity reduced to 3.01% for the vertical flatness and 2.35% for horizontal flatness after correction thus achieving better flatness and uniformity. The absolute dose readings of calibrated films after our correction matched with the readings from OSLD. Conclusion: The proposed correction method for Gafchromic films will be a useful tool to correct inter-film dosimetric variation for the future clinical film dosimetry verification in very large fields, allowing the optimizations of other parameters.« less

Organic pi-stacking Semiconducting Material: Design, Synthesis and the Analysis of Structure and Properties

NASA Astrophysics Data System (ADS)

Wilkinson, Taylor Marie

Oil shales are naturally occurring heterogeneous composites with micro-scale, micro-structural variations. They may be found throughout the world, with large deposits located in the United States; shales are composed of organic matter known as kerogen, clays, calcite, quartz, and other minerals. Typically their microstructure consists of a composite network where the organic matter is housed in open and closed pores between different mineral phases that range in size from sub-micron to several microns. Currently, it is unknown how the micro-scale heterogeneity of the shale will impact hydraulic fracture, which is the key extraction technique used for these materials. In this thesis, high-resolution topographic and modulus maps were collected from oil shales with the use of new nanoindentation techniques in order to characterize the micro-scale, micro-structural variations that are typical for these materials. Dynamic modulus mapping allows for substantially higher spatial resolution of properties across grains and intragranular regions of kerogen than has previously been produced with standard quasistatic indentation methods. For accurate scanning, surface variations were minimized to maintain uniform contact of the tip and appropriate quasi-static and dynamic forces were used to maintain displacement amplitudes that avoid plastic deformation of the sample. Sample preparation to minimize surface roughness was completed with the use of focused ion beam milling, however, some variation was still noted. Due to the large changes in modulus values between the constituents of the shale, there were variations in the recorded displacement amplitude values as well. In order to distinguish biased data due to surface topography or a lack of displacement amplitude, filtering techniques were developed, optimization and implemented. Variations in surface topography, which resulted in the indenter tip not being able to accurately resolve surface features, and inadequate displacement amplitude values that prohibit differentiation between material changes and the noise floor of the machine, were removed. These filters resulted in a more valid interpretation of the micro-scale, micro-structural features and arrangement, as well as the mechanical properties, that are common to oil shales.

Anomalously strong observations of PKiKP/PcP amplitude ratios on a global scale

NASA Astrophysics Data System (ADS)

Waszek, Lauren; Deuss, Arwen

2015-07-01

The inner core boundary marks the phase transition between the solid inner core and the fluid outer core. As the site of inner core solidification, the boundary provides insight into the processes generating the seismic structures of the inner core. In particular, it may hold the key to understanding the previously observed hemispherical asymmetry in inner core seismic velocity, anisotropy, and attenuation. Here we use a large PKiKP-PcP amplitude ratio and travel time residual data set to investigate velocity and density contrast properties near the inner core boundary. Although hemispherical structure at the boundary has been proposed by previous inner core studies, we find no evidence for hemispheres in the amplitude ratios or travel time residuals. In addition, we find that the amplitude ratios are much larger than can be explained by variations in density contrast at the inner core boundary or core-mantle boundary. This indicates that PKiKP is primarily observed when it is anomalously large, due to focusing along its raypath. Using data in which PKiKP is not detected above the noise level, we calculate an upper estimate for the inner core boundary (ICB) density contrast of 1.2 kg m-3. The travel time residuals display large regional variations, which differ on long and short length scales. These regions may be explained by large-scale velocity variations in the F layer just above the inner core boundary, and/or small-scale topography of varying magnitude on the ICB, which also causes the large amplitudes. Such differences could arise from localized freezing and melting of the inner core.

Characterizing directional variations in long-period ground motion amplifications in the Kanto Basin, Japan

NASA Astrophysics Data System (ADS)

Mukai, Y.; Furumura, T.; Maeda, T.

2017-12-01

In the Kanto Basin (including Tokyo in Japan), the long-period (T=3-10 s) ground motions are strongly developed when large earthquakes occur nearby. The amplitude of the long-period ground motion in the basin varies strongly among earthquakes; it is tremendous from the earthquakes in Niigata (northwest of Kanto), but is several times weaker from the earthquakes in Tohoku (north of Kanto). In this study, we examined the cause of such azimuthal-dependent amplitude variation for the 2004 Niigata Chuetsu (M6.8) and the 2011 Fukushima Hamadori (M7.0) earthquake based on numerical simulations of seismic wave propagation by the finite-difference method. We first examined the non-isotropic source-radiation effect of these events. By performing numerical simulations for different strike angles of these source faults, significant variation in amplitude of the long-period ground motions were observed in Tokyo for both the events. Among tested strike angles, the source of the 2004 event (strike = 212 deg.) produced the largest long-period ground motion due to strong radiation of surface wave towards the Kanto Basin, while the 2011 event (strike = 132 deg.) produced the least. The minimum-to-maximum ratio of their amplitudes with respect to strike angle is about 2 and 1.3, respectively. These investigations suggest the source radiation effect considerably contributes to the variations of the long-period ground motions. We then examined the effect of the 3D structure of the Kanto Basin on the generation of the long-period ground motion. For the 2004 event, we found that the long-period signal first arrives at the central Tokyo from the western edge of the Kanto Basin. Then, later signals containing both the Rayleigh and Love waves were amplified dramatically due to the localized low-velocity structure to the northwestern part of the basin. On the other hand, in the case of the 2011 event, the seismic waves propagating towards the basin were dissipated significantly as it travels over the ridge structure of the basement in the northern part of the basin, where the seismic wave speed is faster than the surroundings. Therefore, the large variation of the long-period ground motion among earthquakes occurs due to the combined effects of source radiation and propagation properties in the 3D heterogeneous structure of the Kanto Basin.

Tropical Warm Pool Surface Heat Budgets and Temperature: Contrasts Between 1997-98 El Nino and 1998-99 La Nina

NASA Technical Reports Server (NTRS)

Chou, Shu-Hsien; Chou, Ming-Dah; Chan, Pui-King; Lin, Po-Hsiung; Wang, Kung-Hwa

2003-01-01

Seasonal and interannual variations of the net surface heating F(sub NET) and sea surface temperature tendency (T(sub s)/dt) in the tropical eastern Indian and western Pacific Oceans are studied. The surface heat fluxes are derived from the Special Sensor Microwave/Imager and Japanese Geostationary Meteorological Satellite radiance measurements for the period October 1997-September 2000. It is found that the magnitude of solar heating is lager than that of evaporative cooling, but the spatial variation of the latter is significantly large than the former. As a result, the spatial variations of seasonal and interannual variability of F(sub NET), follow closely that of evaporative cooling. Seasonal variations of F(sub NET) and T(sub s)/dt are significantly correlated, except for the equatorial western Pacific. The high correlation is primarily attributable to high correlation between seasonal cycles of solar heating and T(sub s)/dt. The change of F(sub NET) between 1997-98 El Nino and 1998-99 La Nina is significantly larger in the tropical eastern Indian Ocean than tropical western Pacific. For the former region, the reduced evaporative cooling arising from weakened winds during the El Nino is generally associated with enhanced solar heating due to decreased cloudiness, and thus increases the interannual variability of F(sub NET). For the latter region, the reduced evaporative cooling due to weakened winds is generally associated with but exceeds the reduced solar heating arising from increased cloudiness, and vise versa. Thus the interannual variability of F(sub NET) is reduced due to this offsetting effect. Interannual variations of F(sub NET) and T(sub s)/dt have very low correlation. This is most likely related to interannual variability of ocean dynamics, which includes the variations of solar radiation penetrating through oceanic mixed layer, upwelling of cold thermocline water, Indonesian throughflow for transporting heat from the Pacific to Indian Ocean, and interhemispheric transport in the Indian Ocean.

Large-Scale Atmospheric Teleconnection Patterns Associated with the Interannual Variability of Heatwaves in East Asia and Its Decadal Changes

NASA Astrophysics Data System (ADS)

Choi, N.; Lee, M. I.; Lim, Y. K.; Kim, K. M.

2017-12-01

Heatwave is an extreme hot weather event which accompanies fatal damage to human health. The heatwave has a strong relationship with the large-scale atmospheric teleconnection patterns. In this study, we examine the spatial pattern of heatwave in East Asia by using the EOF analysis and the relationship between heatwave frequency and large-scale atmospheric teleconnection patterns. We also separate the time scale of heatwave frequency as the time scale longer than a decade and the interannual time scale. The long-term variation of heatwave frequency in East Asia shows a linkage with the sea surface temperature (SST) variability over the North Atlantic with a decadal time scale (a.k.a. the Atlantic Multidecadal Oscillation; AMO). On the other hands, the interannual variation of heatwave frequency is linked with the two dominant spatial patterns associated with the large-scale teleconnection patterns mimicking the Scandinavian teleconnection (SCAND-like) pattern and the circumglobal teleconnection (CGT-like) pattern, respectively. It is highlighted that the interannual variation of heatwave frequency in East Asia shows a remarkable change after mid-1990s. While the heatwave frequency was mainly associated with the CGT-like pattern before mid-1990s, the SCAND-like pattern becomes the most dominant one after mid-1990s, making the CGT-like pattern as the second. This study implies that the large-scale atmospheric teleconnection patterns play a key role in developing heatwave events in East Asia. This study further discusses possible mechanisms for the decadal change in the linkage between heatwave frequency and the large-scale teleconnection patterns in East Asia such as early melting of snow cover and/or weakening of East Asian jet stream due to global warming.

Heritability and genetic covariation of sensitivity to PROP, SOA, quinine HCl, and caffeine.

PubMed

Hansen, Jonathan L; Reed, Danielle R; Wright, Margaret J; Martin, Nicholas G; Breslin, Paul A S

2006-06-01

The perceived bitterness intensity for bitter solutions of propylthiouracil (PROP), sucrose octa-acetate (SOA), quinine HCl and caffeine were examined in a genetically informative sample of 392 females and 313 males (mean age of 17.8 +/- 3.1 years), including 62 monozygotic and 131 dizygotic twin pairs and 237 sib pairs. Broad-sense heritabilities were estimated at 0.72, 0.28, 0.34, and 0.30 for PROP, SOA, quinine, and caffeine, respectively, for perceived intensity measures. Modeling showed 1) a group factor which explained a large amount of the genetic variation in SOA, quinine, and caffeine (22-28% phenotypic variation), 2) a factor responsible for all the genetic variation in PROP (72% phenotypic variation), which only accounted for 1% and 2% of the phenotypic variation in SOA and caffeine, respectively, and 3) a modest specific genetic factor for quinine (12% phenotypic variation). Unique environmental influences for all four compounds were due to a single factor responsible for 7-22% of phenotypic variation. The results suggest that the perception of PROP and the perception of SOA, quinine, and caffeine are influenced by two distinct sets of genes.

Heritability and Genetic Covariation of Sensitivity to PROP, SOA, Quinine HCl, and Caffeine

PubMed Central

Hansen, Jonathan L.; Reed, Danielle R.; Wright, Margaret J.; Martin, Nicholas G.; Breslin, Paul A. S.

2006-01-01

The perceived bitterness intensity for bitter solutions of propylthiouracil (PROP), sucrose octa-acetate (SOA), quinine HCl and caffeine were examined in a genetically informative sample of 392 females and 313 males (mean age of 17.8 ± 3.1 years), including 62 MZ and 131 DZ twin pairs and 237 sib pairs. Broad-sense heritabilities were estimated at 0.72, 0.28, 0.34, and 0.30 for PROP, SOA, quinine, and caffeine, respectively, for perceived intensity measures. Modeling showed 1) a group factor which explained a large amount of the genetic variation in SOA, quinine, and caffeine (22–28% phenotypic variation), 2) a factor responsible for all the genetic variation in PROP (72% phenotypic variation), which only accounted for 1% and 2% of the phenotypic variation in SOA and caffeine, respectively, and 3) a modest specific genetic factor for quinine (12% phenotypic variation). Unique environmental influences for all four compounds were due to a single factor responsible for 7–22% of phenotypic variation. The results suggest that the perception of PROP and the perception of SOA, quinine, and caffeine are influenced by two distinct sets of genes. PMID:16527870

Monitoring of oceanographic properties of Glacier Bay, Alaska 2004

USGS Publications Warehouse

Madison, Erica N.; Etherington, Lisa L.

2005-01-01

Glacier Bay is a recently (300 years ago) deglaciated fjord estuarine system that has multiple sills, very deep basins, tidewater glaciers, and many streams. Glacier Bay experiences a large amount of runoff, high sedimentation, and large tidal variations. High freshwater discharge due to snow and ice melt and the presence of the tidewater glaciers makes the bay extremely cold. There are many small- and large-scale mixing and upwelling zones at sills, glacial faces, and streams. The complex topography and strong currents lead to highly variable salinity, temperature, sediment, primary productivity, light penetration, stratification levels, and current patterns within a small area. The oceanographic patterns within Glacier Bay drive a large portion of the spatial and temporal variability of the ecosystem. It has been widely recognized by scientists and resource managers in Glacier Bay that a program to monitor oceanographic patterns is essential for understanding the marine ecosystem and to differentiate between anthropogenic disturbance and natural variation. This year’s sampling marks the 12th continuous year of monitoring the oceanographic conditions at 23 stations along the primary axes within Glacier Bay, AK, making this a very unique and valuable data set in terms of its spatial and temporal coverage.

Isotope-abundance variations of selected elements (IUPAC technical report)

USGS Publications Warehouse

Coplen, T.B.; Böhlke, J.K.; De Bievre, P.; Ding, T.; Holden, N.E.; Hopple, J.A.; Krouse, H.R.; Lamberty, A.; Peiser, H.S.; Revesz, K.; Rieder, S.E.; Rosman, K.J.R.; Roth, E.; Taylor, P.D.P.; Vocke, R.D.; Xiao, Y.K.

2002-01-01

Documented variations in the isotopic compositions of some chemical elements are responsible for expanded uncertainties in the standard atomic weights published by the Commission on Atomic Weights and Isotopic Abundances of the International Union of Pure and Applied Chemistry. This report summarizes reported variations in the isotopic compositions of 20 elements that are due to physical and chemical fractionation processes (not due to radioactive decay) and their effects on the standard atomic-weight uncertainties. For 11 of those elements (hydrogen, lithium, boron, carbon, nitrogen, oxygen, silicon, sulfur, chlorine, copper, and selenium), standard atomic-weight uncertainties have been assigned values that are substantially larger than analytical uncertainties because of common isotope-abundance variations in materials of natural terrestrial origin. For 2 elements (chromium and thallium), recently reported isotope-abundance variations potentially are large enough to result in future expansion of their atomic-weight uncertainties. For 7 elements (magnesium, calcium, iron, zinc, molybdenum, palladium, and tellurium), documented isotope variations in materials of natural terrestrial origin are too small to have a significant effect on their standard atomic-weight uncertainties. This compilation indicates the extent to which the atomic weight of an element in a given material may differ from the standard atomic weight of the element. For most elements given above, data are graphically illustrated by a diagram in which the materials are specified in the ordinate and the compositional ranges are plotted along the abscissa in scales of (1) atomic weight, (2) mole fraction of a selected isotope, and (3) delta value of a selected isotope ratio.

Quantitative analysis of interaction between the free troposphere and planetary boundary layer using multiple measurements and large eddy simulation model

NASA Astrophysics Data System (ADS)

Huang, Guanyu

We investigate the interaction between the free troposphere (FT) and planetary boundary layer (PBL) using multiple measurements and Dutch Atmospheric Large Eddy Simulation (DALES) coupled with a chemical module. A residual layer (RL) storing high ozone concentrations can significantly influence ground ozone concentration through the entrainment process whereby the RL aloft is incorporated into the growing convective boundary layer (CBL) during the morning transition. We use DALES model coupled with a chemical module to simultaneously study the dynamical and chemical impacts of a RL (200-1200 m above ground level (AGL)) on ground-level (0-200 m AGL) ozone concentrations. Four numerical experiments test these interactions: 1) a RL with high ozone (100 ppb); 2) a RL with low ozone (50 ppb); 3) no RL with high ozone above the NBL (100 ppb from 200-1200 m AGL); and 4) no RL with low ozone above the NBL (50 ppb). The results indicate that ozone stored in the RL can contribute up to 86% of the ozone concentration in the CBL during the following day in Case 1. Even in Case 2, 64% of the ozone in the developed CBL results from intrusions from the RL. Additionally, a RL also increases the enhancement rate of ozone in the CBL. Furthermore, we investigate the ozone diurnal variation on September 6, 2013 in Huntsville AL. The ozone variation in the CBL is mainly caused by local emissions due to the weather conditions being controlled by an anticyclonic system. The local chemical production contributes over 67% of the ozone enhancement in the CBL. The dynamical processes contribute the rest. The numerical experiments show good agreement with our ozone lidar observations. However, our simulation results and ozone lidar observations fail to reproduce a declining trend of surface ozone measured by an Environment Protection Agency (EPA) surface monitoring station that is 6 km south of our facilities, which is very likely due to the large ozone horizontal variation and the diurnal variation of ozone dry deposition under urban environment.

Hydrological control on Ozone greenhouse gas effect

NASA Astrophysics Data System (ADS)

Kuai, L.; Bowman, K. W.; Worden, H. M.; Herman, R. L.; Kulawik, S. S.

2016-12-01

Our study present a new concept to use a derived observation-based quantity: instantaneous radiative kernel (IRK), to access the hydrological control on the variation of ozone greenhouse gas effect with AURA TES satellite data. We attribute the spatiotemporal variation of the TES O3 longwave radiative effect (LWRE), which is defined as the net reduction of top-of-atmosphere flux due to total tropospheric O3 absorption, to variations in relative humidity, surface temperature, and tropospheric O3 column. The maximum GHG effect for ozone, represented by LWRE, is found to be around 0.6 to 0.7 Wm-2 on zonal average in the subtropics. This maximum is related by low water vapor concentrations and suppression of clouds, which are driven by the downward branch of the Hadley cell over this region. Within the subtropics, the largest values of LWRE are over the Middle East (>1 W/m2) due to both large thermal contrast and tropospheric ozone enhancements from atmospheric circulation and pollution. Conversely, a lower ozone GHG effect (about 0.4 Wm-2 or lower) is found in the deep tropics closely following the Inter-Tropical Convergence Zone, attributable to strong water vapor absorption and clouds over deep convective regions. These results show that changes in the hydrological cycle due to climate change could impact the magnitude and distribution of ozone radiative forcing.

Cone-Beam Computed Tomography–Guided Positioning of Laryngeal Cancer Patients with Large Interfraction Time Trends in Setup and Nonrigid Anatomy Variations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gangsaas, Anne, E-mail: a.gangsaas@erasmusmc.nl; Astreinidou, Eleftheria; Quint, Sandra

2013-10-01

Purpose: To investigate interfraction setup variations of the primary tumor, elective nodes, and vertebrae in laryngeal cancer patients and to validate protocols for cone beam computed tomography (CBCT)-guided correction. Methods and Materials: For 30 patients, CBCT-measured displacements in fractionated treatments were used to investigate population setup errors and to simulate residual setup errors for the no action level (NAL) offline protocol, the extended NAL (eNAL) protocol, and daily CBCT acquisition with online analysis and repositioning. Results: Without corrections, 12 of 26 patients treated with radical radiation therapy would have experienced a gradual change (time trend) in primary tumor setup ≥4more » mm in the craniocaudal (CC) direction during the fractionated treatment (11/12 in caudal direction, maximum 11 mm). Due to these trends, correction of primary tumor displacements with NAL resulted in large residual CC errors (required margin 6.7 mm). With the weekly correction vector adjustments in eNAL, the trends could be largely compensated (CC margin 3.5 mm). Correlation between movements of the primary and nodal clinical target volumes (CTVs) in the CC direction was poor (r{sup 2}=0.15). Therefore, even with online setup corrections of the primary CTV, the required CC margin for the nodal CTV was as large as 6.8 mm. Also for the vertebrae, large time trends were observed for some patients. Because of poor CC correlation (r{sup 2}=0.19) between displacements of the primary CTV and the vertebrae, even with daily online repositioning of the vertebrae, the required CC margin around the primary CTV was 6.9 mm. Conclusions: Laryngeal cancer patients showed substantial interfraction setup variations, including large time trends, and poor CC correlation between primary tumor displacements and motion of the nodes and vertebrae (internal tumor motion). These trends and nonrigid anatomy variations have to be considered in the choice of setup verification protocol and planning target volume margins. eNAL could largely compensate time trends with minor prolongation of fraction time.« less

Landslides in Valles Marineris, Mars.

USGS Publications Warehouse

Lucchitta, B.K.

1979-01-01

Large landslides in the Martian equatorial troughs have been investigated with respect to morphology, geologic structure of the troughs, time of emplacement, similarity to terrestrial landslides, and origin and mechanism of transport. The morphologic variations of the landslides can be attributed mainly to their degree of confinement on trough floors. The huge size of many landslides is due to their occurrence on fault scarps that may have attained several kilometers in height in the absence of vigorous fluvial erosion on Mars. The mechanical efficiency of the Martian landslides is high but in accord with predictions from large landslides on earth. -from Author

A fiber-optic ice detection system for large-scale wind turbine blades

NASA Astrophysics Data System (ADS)

Kim, Dae-gil; Sampath, Umesh; Kim, Hyunjin; Song, Minho

2017-09-01

Icing causes substantial problems in the integrity of large-scale wind turbines. In this work, a fiber-optic sensor system for detection of icing with an arrayed waveguide grating is presented. The sensor system detects Fresnel reflections from the ends of the fibers. The transition in Fresnel reflection due to icing gives peculiar intensity variations, which categorizes the ice, the water, and the air medium on the wind turbine blades. From the experimental results, with the proposed sensor system, the formation of icing conditions and thickness of ice were identified successfully in real time.

Distinctiveness of the Roma population within CYP2B6 worldwide variation.

PubMed

Tomas, Željka; Kuhanec, Antonija; Škarić-Jurić, Tatjana; Petranović, Matea Zajc; Narančić, Nina Smolej; Janićijević, Branka; Salihović, Marijana Peričić

2017-11-01

To determine variation of CYP2B6 gene within the genetically specific Croatian Roma (Gypsy) population originating from India and to examine it in the worldwide perspective. Seven SNP loci (rs12721655, rs2279343, rs28399499, rs34097093, rs3745274, rs7260329 and rs8192709) were genotyped in 439 subjects using Kompetitive Allele Specific PCR (KASP) method. The Croatian Roma took an outlying position in CYP2B6 variation from the worldwide perspective mainly due to their exceptionally high minor allele frequency (MAF) for rs8192709 (12.8%), and lower for rs2279343 (21.1%) compared with south Asian populations. This study provides the first data of several CYP2B6 polymorphisms in Roma population and indicates the need for systematic investigation of the most important pharmacogenes' variants in this large, transnationally isolated population worldwide.

Thermo-mechanical behavior of power electronic packaging assemblies: From characterization to predictive simulation of lifetimes

NASA Astrophysics Data System (ADS)

Dalverny, O.; Alexis, J.

2018-02-01

This article deals with thermo-mechanical behavior of power electronic modules used in several transportation applications as railway, aeronautic or automotive systems. Due to a multi-layered structures, involving different materials with a large variation of coefficient of thermal expansion, temperature variations originated from active or passive cycling (respectively from die dissipation or environmental constraint) induces strain and stresses field variations, giving fatigue phenomenon of the system. The analysis of the behavior of these systems and their dimensioning require the implementation of complex modeling strategies by both the multi-physical and the multi-scale character of the power modules. In this paper we present some solutions for studying the thermomechanical behavior of brazed assemblies as well as taking into account the interfaces represented by the numerous metallizations involved in the process assembly.

Additive genetic variation in the craniofacial skeleton of baboons (genus Papio) and its relationship to body and cranial size.

PubMed

Joganic, Jessica L; Willmore, Katherine E; Richtsmeier, Joan T; Weiss, Kenneth M; Mahaney, Michael C; Rogers, Jeffrey; Cheverud, James M

2018-02-01

Determining the genetic architecture of quantitative traits and genetic correlations among them is important for understanding morphological evolution patterns. We address two questions regarding papionin evolution: (1) what effect do body and cranial size, age, and sex have on phenotypic (V P ) and additive genetic (V A ) variation in baboon crania, and (2) how might additive genetic correlations between craniofacial traits and body mass affect morphological evolution? We use a large captive pedigreed baboon sample to estimate quantitative genetic parameters for craniofacial dimensions (EIDs). Our models include nested combinations of the covariates listed above. We also simulate the correlated response of a given EID due to selection on body mass alone. Covariates account for 1.2-91% of craniofacial V P . EID V A decreases across models as more covariates are included. The median genetic correlation estimate between each EID and body mass is 0.33. Analysis of the multivariate response to selection reveals that observed patterns of craniofacial variation in extant baboons cannot be attributed solely to correlated response to selection on body mass, particularly in males. Because a relatively large proportion of EID V A is shared with body mass variation, different methods of correcting for allometry by statistically controlling for size can alter residual V P patterns. This may conflate direct selection effects on craniofacial variation with those resulting from a correlated response to body mass selection. This shared genetic variation may partially explain how selection for increased body mass in two different papionin lineages produced remarkably similar craniofacial phenotypes. © 2017 Wiley Periodicals, Inc.

Dispersion Measure Variation of Repeating Fast Radio Burst Sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Yuan-Pei; Zhang, Bing, E-mail: yypspore@gmail.com, E-mail: zhang@physics.unlv.edu

The repeating fast radio burst (FRB) 121102 was recently localized in a dwarf galaxy at a cosmological distance. The dispersion measure (DM) derived for each burst from FRB 121102 so far has not shown significant evolution, even though an apparent increase was recently seen with newly detected VLA bursts. It is expected that more repeating FRB sources may be detected in the future. In this work, we investigate a list of possible astrophysical processes that might cause DM variation of a particular FRB source. The processes include (1) cosmological scale effects such as Hubble expansion and large-scale structure fluctuations; (2)more » FRB local effects such as gas density fluctuation, expansion of a supernova remnant (SNR), a pulsar wind nebula, and an H ii region; and (3) the propagation effect due to plasma lensing. We find that the DM variations contributed by the large-scale structure are extremely small, and any observable DM variation is likely caused by the plasma local to the FRB source. In addition to mechanisms that decrease DM over time, we suggest that an FRB source in an expanding SNR around a nearly neutral ambient medium during the deceleration (Sedov–Taylor and snowplow) phases or in a growing H ii region can increase DM. Some effects (e.g., an FRB source moving in an H ii region or plasma lensing) can produce either positive or negative DM variations. Future observations of DM variations of FRB 121102 and other repeating FRB sources can provide important clues regarding the physical origin of these sources.« less

A large-scale association analysis of 68 thyroid hormone pathway genes with serum TSH and FT4 levels.

PubMed

Medici, Marco; van der Deure, Wendy M; Verbiest, Michael; Vermeulen, Sita H; Hansen, Pia S; Kiemeney, Lambertus A; Hermus, Ad R M M; Breteler, Monique M; Hofman, Albert; Hegedüs, Laszlo; Kyvik, Kirsten Ohm; den Heijer, Martin; Uitterlinden, André G; Visser, Theo J; Peeters, Robin P

2011-05-01

Minor variation in serum thyroid hormone (TH) levels can have important effects on various clinical endpoints. Although 45-65% of the inter-individual variation in serum TH levels is due to genetic factors, the causative genes are not well established. We therefore studied the effects of genetic variation in 68 TH pathway genes on serum TSH and free thyroxine (FT(4)) levels. Sixty-eight genes (1512 polymorphisms) were studied in relation to serum TSH and FT(4) levels in 1121 Caucasian subjects. Promising hits (P<0.01) were studied in three independent Caucasian populations (2656 subjects) for confirmation. A meta-analysis of all four studies was performed. For TSH, eight PDE8B polymorphisms (P=4×10(-17)) remained significant in the meta-analysis. For FT(4), two DIO1 (P=8×10(-12)) and one FOXE1 (P=0.0003) polymorphisms remained significant in the meta-analysis. Suggestive associations were detected for one FOXE1 (P=0.0028) and three THRB (P=0.0045) polymorphisms with TSH, and one SLC16A10 polymorphism (P=0.0110) with FT(4), but failed to reach the significant multiple-testing corrected P value (P<0.0022 and P<0.0033 respectively). Using a large-scale association analysis, we replicated previously reported associations with genetic variation in PDE8B, THRB, and DIO1. We demonstrate effects of genetic variation in FOXE1 on serum FT(4) levels, and borderline significant effects on serum TSH levels. A suggestive association of genetic variation in SLC16A10 with serum FT(4) levels was found. These data provide insight into the molecular basis of inter-individual variation in TH serum levels.

Macrophytes shape trophic niche variation among generalist fishes.

PubMed

Vejříková, Ivana; Eloranta, Antti P; Vejřík, Lukáš; Šmejkal, Marek; Čech, Martin; Sajdlová, Zuzana; Frouzová, Jaroslava; Kiljunen, Mikko; Peterka, Jiří

2017-01-01

Generalist species commonly have a fundamental role in ecosystems as they can integrate spatially distinct habitats and food-web compartments, as well as control the composition, abundance and behavior of organisms at different trophic levels. Generalist populations typically consist of specialized individuals, but the potential for and hence degree of individual niche variation can be largely determined by habitat complexity. We compared individual niche variation within three generalist fishes between two comparable lakes in the Czech Republic differing in macrophyte cover, i.e. macrophyte-rich Milada and macrophyte-poor Most. We tested the hypothesis that large individual niche variation among generalist fishes is facilitated by the presence of macrophytes, which provides niches and predation shelter for fish and their prey items. Based on results from stable nitrogen (δ15N) and carbon (δ13C) isotopic mixing models, perch (Perca fluviatilis L.) and rudd (Scardinius erythrophthalmus (L.)) showed larger individual variation (i.e., variance) in trophic position in Milada as compared to Most, whereas no significant between-lake differences were observed for roach (Rutilus rutilus (L.)). Contrary to our hypothesis, all the three species showed significantly lower individual variation in the relative reliance on littoral food resources in Milada than in Most. Rudd relied significantly more whereas perch and roach relied less on littoral food resources in Milada than in Most, likely due to prevalent herbivory by rudd and prevalent zooplanktivory by perch and roach in the macrophyte-rich Milada as compared to macrophyte-poor Most. Our study demonstrates how the succession of macrophyte vegetation, via its effects on the physical and biological complexity of the littoral zone and on the availability of small prey fish and zooplankton, can strongly influence individual niche variation among generalist fishes with different ontogenetic trajectories, and hence the overall food-web structures in lake ecosystems.

Which In- and Out-of-School Factors Explain Variations in Learning across Different Socio Economic Groups? Findings from South Africa

ERIC Educational Resources Information Center

Smith, Michele C.

2011-01-01

Previous studies on the role of the school in influencing attainment in South African schools have concluded that the inequalities which are known to exist in these are still largely due to the legacy of the Apartheid system. More recently, policy focus has been on narrowing the gap between the attainment of different socio-economic groups by…

Recent projections of 21st-century climate change and watershed responses in the Sierra Nevada

Treesearch

Michael D. Dettinger; Daniel R. Cayan; Noah Knowles; Anthony Westerling; Mary K. Tyree

2004-01-01

In the near future, the Sierra Nevada’s climate is projected to experience a new form of climate change due to increasing concentrations of greenhouse gases in the global atmosphere from the burning of fossil fuels and other human activities. If the changes occur, they presumably will be added to the large interannual and longer-term climate variations in the recent...

Current sheet collapse in a plasma focus.

NASA Technical Reports Server (NTRS)

Jalufka, N. W.; Lee, J. H.

1972-01-01

Collapse of the current sheets in a plasma focus has been recorded simultaneously through slits parallel and perpendicular to the symmetry axis in the streak mode. The dark period following the collapse is due to the plasma moving out of the field of view. Microdensitometric measurements of intensity variation also support this conclusion. A large anisotropy is also found in the x-ray radiation pattern. Effects of different vacuum vessels were investigated.

Solar gravitational energy and luminosity variations

NASA Astrophysics Data System (ADS)

Fazel, Z.; Rozelot, J. P.; Lefebvre, S.; Ajabshirizadeh, A.; Pireaux, S.

2008-02-01

Due to non-homogeneous mass distribution and non-uniform velocity rate inside the Sun, the solar outer shape is distorted in latitude. In this paper, we analyze the consequences of a temporal change in this figure on the luminosity. To do so, we use the Total Solar Irradiance (TSI) as an indicator of luminosity. Considering that most of the authors have explained the largest part of the TSI modulation with magnetic network (spots and faculae) but not the whole, we could set constraints on radius and effective temperature variations. Our best fit of modelled to observed irradiance gives d T = 1.2 K at d R = 10 mas. However computations show that the amplitude of solar irradiance modulation is very sensitive to photospheric temperature variations. In order to understand discrepancies between our best fit and recent observations of [Livingston, W.C., Gray, D., Wallace, L., White, O.R., 2005. In: Sankarasubramanian, K., Penn, M., Pevtsov, A. (Eds.), Large-scale Structures and their Role in Solar Activity, ASP Conference Series, vol. 346. Astronomical Society of the Pacific, p. 353], showing no effective surface temperature variation during the solar cycle, we investigated small effective temperature variation in irradiance modeling. We emphasized a phase-shift (correlated or anticorrelated radius and irradiance variations) in the (d R, d T)-parameter plane. We further obtained an upper limit on the amplitude of cyclic solar radius variations between 3.87 and 5.83 km, deduced from the gravitational energy variations. Our estimate is consistent with both observations of the helioseismic radius through the analysis of f-mode frequencies and observations of the basal photospheric temperature at Kitt Peak. Finally, we suggest a mechanism to explain weak changes in the solar shape due to variation of magnetic pressure which modifies the granules size. This mechanism is supported by an estimate of the asphericity-luminosity parameter, w = -7.61 × 10 -3, which implies an effectiveness of convective heat transfer only in very outer layers of the Sun.

N-terminal pro-B-type natriuretic peptide variability in stable dialysis patients.

PubMed

Fahim, Magid A; Hayen, Andrew; Horvath, Andrea R; Dimeski, Goce; Coburn, Amanda; Johnson, David W; Hawley, Carmel M; Campbell, Scott B; Craig, Jonathan C

2015-04-07

Monitoring N-terminal pro-B-type natriuretic peptide (NT-proBNP) may be useful for assessing cardiovascular risk in dialysis patients. However, its biologic variation is unknown, hindering the accurate interpretation of serial concentrations. The aims of this prospective cohort study were to estimate the within- and between-person coefficients of variation of NT-proBNP in stable dialysis patients, and derive the critical difference between measurements needed to exclude biologic and analytic variation. Fifty-five prevalent hemodialysis and peritoneal dialysis patients attending two hospitals were assessed weekly for 5 weeks and then monthly for 4 months between October 2010 and April 2012. Assessments were conducted at the same time in the dialysis cycle and entailed NT-proBNP testing, clinical review, electrocardiography, and bioimpedance spectroscopy. Patients were excluded if they became unstable. This study analyzed 136 weekly and 113 monthly NT-proBNP measurements from 40 and 41 stable patients, respectively. Results showed that 22% had ischemic heart disease; 9% and 87% had left ventricular systolic and diastolic dysfunction, respectively. Respective between- and within-person coefficients of variation were 153% and 27% for weekly measurements, and 148% and 35% for monthly measurements. Within-person variation was unaffected by dialysis modality, hydration status, inflammation, or cardiac comorbidity. NT-proBNP concentrations measured at weekly intervals needed to increase by at least 46% or decrease by 84% to exclude change due to biologic and analytic variation alone with 90% certainty, whereas monthly measurements needed to increase by at least 119% or decrease by 54%. The between-person variation of NT-proBNP was large and markedly greater than within-person variation, indicating that NT-proBNP testing might better be applied in the dialysis population using a relative-change strategy. Serial NT-proBNP concentrations need to double or halve to confidently exclude change due to analytic and biologic variation alone. Copyright © 2015 by the American Society of Nephrology.

Overcoming the dichotomy between open and isolated populations using genomic data from a large European dataset

PubMed Central

Anagnostou, Paolo; Dominici, Valentina; Battaggia, Cinzia; Pagani, Luca; Vilar, Miguel; Wells, R. Spencer; Pettener, Davide; Sarno, Stefania; Boattini, Alessio; Francalacci, Paolo; Colonna, Vincenza; Vona, Giuseppe; Calò, Carla; Destro Bisol, Giovanni; Tofanelli, Sergio

2017-01-01

Human populations are often dichotomized into “isolated” and “open” categories using cultural and/or geographical barriers to gene flow as differential criteria. Although widespread, the use of these alternative categories could obscure further heterogeneity due to inter-population differences in effective size, growth rate, and timing or amount of gene flow. We compared intra and inter-population variation measures combining novel and literature data relative to 87,818 autosomal SNPs in 14 open populations and 10 geographic and/or linguistic European isolates. Patterns of intra-population diversity were found to vary considerably more among isolates, probably due to differential levels of drift and inbreeding. The relatively large effective size estimated for some population isolates challenges the generalized view that they originate from small founding groups. Principal component scores based on measures of intra-population variation of isolated and open populations were found to be distributed along a continuum, with an area of intersection between the two groups. Patterns of inter-population diversity were even closer, as we were able to detect some differences between population groups only for a few multidimensional scaling dimensions. Therefore, different lines of evidence suggest that dichotomizing human populations into open and isolated groups fails to capture the actual relations among their genomic features. PMID:28145502

Dynamic triggering of low magnitude earthquakes in the Middle American Subduction Zone

NASA Astrophysics Data System (ADS)

Escudero, C. R.; Velasco, A. A.

2010-12-01

We analyze global and Middle American Subduction Zone (MASZ) seismicity from 1998 to 2008 to quantify the transient stresses effects at teleseismic distances. We use the Bulletin of the International Seismological Centre Catalog (ISCCD) published by the Incorporated Research Institutions for Seismology (IRIS). To identify MASZ seismicity changes due to distant, large (Mw >7) earthquakes, we first identify local earthquakes that occurred before and after the mainshocks. We then group the local earthquakes within a cluster radius between 75 to 200 km. We obtain statistics based on characteristics of both mainshocks and local earthquakes clusters, such as local cluster-mainshock azimuth, mainshock focal mechanism, and local earthquakes clusters within the MASZ. Due to lateral variations of the dip along the subducted oceanic plate, we divide the Mexican subduction zone in four segments. We then apply the Paired Samples Statistical Test (PSST) to the sorted data to identify increment, decrement or either in the local seismicity associated with distant large earthquakes. We identify dynamic triggering for all MASZ segments produced by large earthquakes emerging from specific azimuths, as well as, a decrease for some cases. We find no depend of seismicity changes due to focal mainshock mechanism.

Magnetic susceptibility variations in Loess sequences and their relationship to astronomical forcing

NASA Technical Reports Server (NTRS)

Verosub, Kenneth L.; Singer, Michael J.

1992-01-01

The long, well-exposed and often continuous sequences of loess found throughout the world are generally thought to provide an excellent opportunity for studying long-term, large-scale environmental change during the last few million years. In recent years, the most fruitful loess studies have been those involving the deposits of the loess in China. One of the most intriguing results of that work has been the discovery of an apparent correlation between variations in the magnetic susceptibility of the loess sequence and the oxygen isotope record of the deep sea. This correlation implies that magnetic susceptibility variations are being driven by astronomical parameters. However, the basic data have been interpreted in various ways by different authors, most of whom assumed that the magnetic minerals in the loess have not been affected by post-depositional processes. Using a chemical extraction procedure that allows us to separate the contribution of secondary pedogenic magnetic minerals from primary inherited magnetic minerals, we have found that the magnetic susceptibility of the Chinese paleosols is largely due to a pedogenic component which is present to a lesser degree in the loess. We have also found that the smaller inherited component of the magnetic susceptibility is about the same in the paleosols and the loess. These results demonstrate the need for additional study of the processes that create magnetic susceptibility variations in order to interpret properly the role of astronomical forcing in producing these variations.

Modeling stimulus variation in three common implicit attitude tasks.

PubMed

Wolsiefer, Katie; Westfall, Jacob; Judd, Charles M

2017-08-01

We explored the consequences of ignoring the sampling variation due to stimuli in the domain of implicit attitudes. A large literature in psycholinguistics has examined the statistical treatment of random stimulus materials, but the recommendations from this literature have not been applied to the social psychological literature on implicit attitudes. This is partly because of inherent complications in applying crossed random-effect models to some of the most common implicit attitude tasks, and partly because no work to date has demonstrated that random stimulus variation is in fact consequential in implicit attitude measurement. We addressed this problem by laying out statistically appropriate and practically feasible crossed random-effect models for three of the most commonly used implicit attitude measures-the Implicit Association Test, affect misattribution procedure, and evaluative priming task-and then applying these models to large datasets (average N = 3,206) that assess participants' implicit attitudes toward race, politics, and self-esteem. We showed that the test statistics from the traditional analyses are substantially (about 60 %) inflated relative to the more-appropriate analyses that incorporate stimulus variation. Because all three tasks used the same stimulus words and faces, we could also meaningfully compare the relative contributions of stimulus variation across the tasks. In an appendix, we give syntax in R, SAS, and SPSS for fitting the recommended crossed random-effects models to data from all three tasks, as well as instructions on how to structure the data file.

Can the normalized soil moisture index improve the prediction of soil organic carbon based on hyperspectral remote sensing data?

NASA Astrophysics Data System (ADS)

van Wesemael, Bas; Nocita, Marco

2016-04-01

One of the problems for mapping of soil organic carbon (SOC) at large-scale based on visible - near and short wave infrared (VIS-NIR-SWIR) remote sensing techniques is the spatial variation of topsoil moisture when the images are collected. Soil moisture is certainly an aspect causing biased SOC estimations, due to the problems in discriminating reflectance differences due to either variations in organic matter or soil moisture, or their combination. In addition, the difficult validation procedures make the accurate estimation of soil moisture from optical airborne a major challenge. After all, the first millimeters of the soil surface reflect the signal to the airborne sensor and show a large spatial, vertical and temporal variation in soil moisture. Hence, the difficulty of assessing the soil moisture of this thin layer at the same moment of the flight. The creation of a soil moisture proxy, directly retrievable from the hyperspectral data is a priority to improve the large-scale prediction of SOC. This paper aims to verify if the application of the normalized soil moisture index (NSMI) to Airborne Prima Experiment (APEX) hyperspectral images could improve the prediction of SOC. The study area was located in the loam region of Wallonia, Belgium. About 40 samples were collected from bare fields covered by the flight lines, and analyzed in the laboratory. Soil spectra, corresponding to the sample locations, were extracted from the images. Once the NSMI was calculated for the bare fields' pixels, spatial patterns, presumably related to within field soil moisture variations, were revealed. SOC prediction models, built using raw and pre-treated spectra, were generated from either the full dataset (general model), or pixels belonging to one of the two classes of NSMI values (NSMI models). The best result, with a RMSE after validation of 1.24 g C kg-1, was achieved with a NSMI model, compared to the best general model, characterized by a RMSE of 2.11 g C kg-1. These results confirmed the advantage to controlling the effect of soil moisture on the detection of SOC. The NSMI proved to be a flexible concept, due to the possible use of different SWIR wavelengths, and ease of use, because measurements of soil moisture by other techniques are not needed. However, in the future, it will be important to assess the effectiveness of the NSMI for different soil types, and other hyperspectral sensors.

Does a strategy to promote shared decision-making reduce medical practice variation in the choice of either single or double embryo transfer after in vitro fertilisation? A secondary analysis of a randomised controlled trial.

PubMed

Brabers, Anne E M; van Dijk, Liset; Groenewegen, Peter P; van Peperstraten, Arno M; de Jong, Judith D

2016-05-06

The hypothesis that shared decision-making (SDM) reduces medical practice variations is increasingly common, but no evidence is available. We aimed to elaborate further on this, and to perform a first exploratory analysis to examine this hypothesis. This analysis, based on a limited data set, examined how SDM is associated with variation in the choice of single embryo transfer (SET) or double embryo transfer (DET) after in vitro fertilisation (IVF). We examined variation between and within hospitals. A secondary analysis of a randomised controlled trial. 5 hospitals in the Netherlands. 222 couples (woman aged <40 years) on a waiting list for a first IVF cycle, who could choose between SET and DET (ie, ≥2 embryos available). SDM via a multifaceted strategy aimed to empower couples in deciding how many embryos should be transferred. The strategy consisted of decision aid, support of IVF nurse and the offer of reimbursement for an extra treatment cycle. Control group received standard IVF care. Difference in variation due to SDM in the choice of SET or DET, both between and within hospitals. There was large variation in the choice of SET or DET between hospitals in the control group. Lower variation between hospitals was observed in the group with SDM. Within most hospitals, variation in the choice of SET or DET appeared to increase due to SDM. Variation particularly increased in hospitals where mainly DET was chosen in the control group. Although based on a limited data set, our study gives a first insight that including patients' preferences through SDM results in less variation between hospitals, and indicates another pattern of variation within hospitals. Variation that results from patient preferences could be potentially named the informed patient rate. Our results provide the starting point for further research. NCT00315029; Post-results. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

Schiaparelli Hemisphere

NASA Image and Video Library

1996-06-03

This mosaic is composed of about 100 red- and violet- filter Viking Orbiter images, digitally mosaiced in an orthographic projection at a scale of 1 km/pixel. The images were acquired in 1980 during mid northern summer on Mars (Ls = 89 degrees). The center of the image is near the impact crater Schiaparelli (latitude -3 degrees, longitude 343 degrees). The limits of this mosaic are approximately latitude -60 to 60 degrees and longitude 280 to 30 degrees. The color variations have been enhanced by a factor of two, and the large-scale brightness variations (mostly due to sun-angle variations) have been normalized by large-scale filtering. The large circular area with a bright yellow color (in this rendition) is known as Arabia. The boundary between the ancient, heavily-cratered southern highlands and the younger northern plains occurs far to the north (latitude 40 degrees) on this side of the planet, just north of Arabia. The dark streaks with bright margins emanating from craters in the Oxia Palus region (to the left of Arabia) are caused by erosion and/or deposition by the wind. The dark blue area on the far right, called Syrtis Major Planum, is a low-relief volcanic shield of probable basaltic composition. Bright white areas to the south, including the Hellas impact basin at the lower right, are covered by carbon dioxide frost. http://photojournal.jpl.nasa.gov/catalog/PIA00004

Development of an engineering model atmosphere for Mars

NASA Technical Reports Server (NTRS)

Justus, C. G.

1988-01-01

An engineering model atmosphere for Mars is being developed with many of the same features and capabilities for the highly successful Global Reference Atmospheric Model (GRAM) program for Earth's atmosphere. As an initial approach, the model is being built around the Martian atmosphere model computer subroutine (ATMOS) of Culp and Stewart (1984). In a longer-term program of research, additional refinements and modifications will be included. ATMOS includes parameterizations to stimulate the effects of solar activity, seasonal variation, diurnal variation magnitude, dust storm effects, and effects due to the orbital position of Mars. One of the current shortcomings of ATMOS is the neglect of surface variation effects. The longer-term period of research and model building is to address some of these problem areas and provide further improvements in the model (including improved representation of near-surface variations, improved latitude-longitude gradient representation, effects of the large annual variation in surface pressure because of differential condensation/sublimation of the CO2 atmosphere in the polar caps, and effects of Martian atmospheric wave perturbations on the magnitude of the expected density perturbation.

Spatial variation of the Universal Thermal Climate Index in Lublin in specified weather scenarios / Zróżnicowanie przestrzenne wskaźnika UTCI w Lublinie w określonych scenariuszach pogodowych

NASA Astrophysics Data System (ADS)

Dobek, Mateusz; Demczuk, Piotr; Nowosad, Marek

2013-06-01

Due to the diversified land relief and presence of numerous gorge dissections intensively used by man largely for recreational purposes, Lublin is a valuable study area in terms of bioclimatology. The results of modelling of the variation of the bioclimatic conditions of Lublin provide information useful e.g. in the economy and spatial planning. The determined features of the city's bioclimate can be a significant element in the selection of locations for new residential and recreational investments. Knowledge on the spatial variation of biometeorological situations positively and negatively influencing the human organism can also find application in activities concerning the improvement of life quality and health protection, as well as in tourism and recreation. The objective of the paper is to present the spatial variation of biometeorological conditions in Lublin based on the example of specified weather scenarios.

Influence of magnetic pressure on stellar structure: A Mechanism for solar variability

NASA Technical Reports Server (NTRS)

Schatten, K. H.; Endal, A. S.

1980-01-01

A physical mechanism is proposed that couples the Sun's dynamo magnetic field to its gravitational potential energy. The mechanism involves the isotropic field pressure resulting in a lifting force on the convective envelope, thereby raising its potential energy. Decay of the field due to solar activity allows the envelop to subside and releases this energy, which can augment the otherwise steady solar luminosity. Equations are developed and applied to the Sun for several field configurations. The best estimate model suggests that uniform luminosity variations as large as 0.02% for half a sunspot cycle may occur. Brief temporal variations or the rotation of spatial structures could allow larger excursions in the energy released.

Operating manual: Fast response solar array simulator

NASA Technical Reports Server (NTRS)

Vonhatten, R.; Weimer, A.; Zerbel, D. W.

1971-01-01

The fast response solar array simulator (FRSAS) is a universal solar array simulator which features an AC response identical to that of a real array over a large range of DC operating points. In addition, short circuit current (I sub sc) and open circuit voltage (V sub oc) are digitally programmable over a wide range for use not only in simulating a wide range of array sizes, but also to simulate (I sub sc) and (V sub oc) variations with illumination and temperature. A means for simulation of current variations due to spinning is available. Provisions for remote control and monitoring, automatic failure sensing and warning, and a load simulator are also included.

Spatio-temporal Variations of Characteristic Repeating Earthquake Sequences along the Middle America Trench in Mexico

NASA Astrophysics Data System (ADS)

Dominguez, L. A.; Taira, T.; Hjorleifsdottir, V.; Santoyo, M. A.

2015-12-01

Repeating earthquake sequences are sets of events that are thought to rupture the same area on the plate interface and thus provide nearly identical waveforms. We systematically analyzed seismic records from 2001 through 2014 to identify repeating earthquakes with highly correlated waveforms occurring along the subduction zone of the Cocos plate. Using the correlation coefficient (cc) and spectral coherency (coh) of the vertical components as selection criteria, we found a set of 214 sequences whose waveforms exceed cc≥95% and coh≥95%. Spatial clustering along the trench shows large variations in repeating earthquakes activity. Particularly, the rupture zone of the M8.1, 1985 earthquake shows an almost absence of characteristic repeating earthquakes, whereas the Guerrero Gap zone and the segment of the trench close to the Guerrero-Oaxaca border shows a significantly larger number of repeating earthquakes sequences. Furthermore, temporal variations associated to stress changes due to major shows episodes of unlocking and healing of the interface. Understanding the different components that control the location and recurrence time of characteristic repeating sequences is a key factor to pinpoint areas where large megathrust earthquakes may nucleate and consequently to improve the seismic hazard assessment.

Best-Matched Internal Standard Normalization in Liquid Chromatography-Mass Spectrometry Metabolomics Applied to Environmental Samples.

PubMed

Boysen, Angela K; Heal, Katherine R; Carlson, Laura T; Ingalls, Anitra E

2018-01-16

The goal of metabolomics is to measure the entire range of small organic molecules in biological samples. In liquid chromatography-mass spectrometry-based metabolomics, formidable analytical challenges remain in removing the nonbiological factors that affect chromatographic peak areas. These factors include sample matrix-induced ion suppression, chromatographic quality, and analytical drift. The combination of these factors is referred to as obscuring variation. Some metabolomics samples can exhibit intense obscuring variation due to matrix-induced ion suppression, rendering large amounts of data unreliable and difficult to interpret. Existing normalization techniques have limited applicability to these sample types. Here we present a data normalization method to minimize the effects of obscuring variation. We normalize peak areas using a batch-specific normalization process, which matches measured metabolites with isotope-labeled internal standards that behave similarly during the analysis. This method, called best-matched internal standard (B-MIS) normalization, can be applied to targeted or untargeted metabolomics data sets and yields relative concentrations. We evaluate and demonstrate the utility of B-MIS normalization using marine environmental samples and laboratory grown cultures of phytoplankton. In untargeted analyses, B-MIS normalization allowed for inclusion of mass features in downstream analyses that would have been considered unreliable without normalization due to obscuring variation. B-MIS normalization for targeted or untargeted metabolomics is freely available at https://github.com/IngallsLabUW/B-MIS-normalization .

Mapping UV properties throughout the Cosmic Horseshoe: lessons from VLT-MUSE

NASA Astrophysics Data System (ADS)

James, Bethan L.; Auger, Matt; Pettini, Max; Stark, Daniel P.; Belokurov, V.; Carniani, Stefano

2018-05-01

We present the first spatially resolved rest-frame ultraviolet (UV) study of the gravitationally lensed galaxy, the `Cosmic Horseshoe' (J1148+1930) at z = 2.38. Our gravitational lens model shows that the system is made up of four star-forming regions, each ˜4-8 kpc2 in size, from which we extract four spatially exclusive regional spectra. We study the interstellar and wind absorption lines, along with C III] doublet emission lines, in each region to investigate any variation in emission/absorption line properties. The mapped C III] emission shows distinct kinematical structure, with velocity offsets of ˜±50 km s-1 between regions suggestive of a merging system, and a variation in equivalent width that indicates a change in ionization parameter and/or metallicity between the regions. Absorption line velocities reveal a range of outflow strengths, with gas outflowing in the range -200 ≲ v (km s-1) ≲ -50 relative to the systemic velocity of that region. Interestingly, the strongest gas outflow appears to emanate from the most diffuse star-forming region. The star formation rates remain relatively constant (˜8-16 M⊙ yr-1), mostly due to large uncertainties in reddening estimates. As such, the outflows appear to be `global' rather than `locally' sourced. We measure electron densities with a range of log (Ne) = 3.92-4.36 cm-3, and point out that such high densities may be common when measured using the C III] doublet due to its large critical density. Overall, our observations demonstrate that while it is possible to trace variations in large-scale gas kinematics, detecting inhomogeneities in physical gas properties and their effects on the outflowing gas may be more difficult. This study provides important lessons for the spatially resolved rest-frame UV studies expected with future observatories, such as James Webb Space Telescope.

Soil Respiration in Tibetan Alpine Grasslands: Belowground Biomass and Soil Moisture, but Not Soil Temperature, Best Explain the Large-Scale Patterns

PubMed Central

Geng, Yan; Wang, Yonghui; Yang, Kuo; Wang, Shaopeng; Zeng, Hui; Baumann, Frank; Kuehn, Peter; Scholten, Thomas; He, Jin-Sheng

2012-01-01

The Tibetan Plateau is an essential area to study the potential feedback effects of soils to climate change due to the rapid rise in its air temperature in the past several decades and the large amounts of soil organic carbon (SOC) stocks, particularly in the permafrost. Yet it is one of the most under-investigated regions in soil respiration (Rs) studies. Here, Rs rates were measured at 42 sites in alpine grasslands (including alpine steppes and meadows) along a transect across the Tibetan Plateau during the peak growing season of 2006 and 2007 in order to test whether: (1) belowground biomass (BGB) is most closely related to spatial variation in Rs due to high root biomass density, and (2) soil temperature significantly influences spatial pattern of Rs owing to metabolic limitation from the low temperature in cold, high-altitude ecosystems. The average daily mean Rs of the alpine grasslands at peak growing season was 3.92 µmol CO2 m−2 s−1, ranging from 0.39 to 12.88 µmol CO2 m−2 s−1, with average daily mean Rs of 2.01 and 5.49 µmol CO2 m−2 s−1 for steppes and meadows, respectively. By regression tree analysis, BGB, aboveground biomass (AGB), SOC, soil moisture (SM), and vegetation type were selected out of 15 variables examined, as the factors influencing large-scale variation in Rs. With a structural equation modelling approach, we found only BGB and SM had direct effects on Rs, while other factors indirectly affecting Rs through BGB or SM. Most (80%) of the variation in Rs could be attributed to the difference in BGB among sites. BGB and SM together accounted for the majority (82%) of spatial patterns of Rs. Our results only support the first hypothesis, suggesting that models incorporating BGB and SM can improve Rs estimation at regional scale. PMID:22509373

Variability of tropical cyclone rapid intensification in the North Atlantic and its relationship with climate variations

NASA Astrophysics Data System (ADS)

Wang, Chunzai; Wang, Xidong; Weisberg, Robert H.; Black, Michael L.

2017-12-01

The paper uses observational data from 1950 to 2014 to investigate rapid intensification (RI) variability of tropical cyclones (TCs) in the North Atlantic and its relationships with large-scale climate variations. RI is defined as a TC intensity increase of at least 15.4 m/s (30 knots) in 24 h. The seasonal RI distribution follows the seasonal TC distribution, with the highest number in September. Although an RI event can occur anywhere over the tropical North Atlantic (TNA), there are three regions of maximum RI occurrence: (1) the western TNA of 12°N-18°N and 60°W-45°W, (2) the Gulf of Mexico and the western Caribbean Sea, and (3) the open ocean southeast and east of Florida. RI events also show a minimum value in the eastern Caribbean Sea north of South America—a place called a hurricane graveyard due to atmospheric divergence and subsidence. On longer time scales, RI displays both interannual and multidecadal variability, but RI does not show a long-term trend due to global warming. The top three climate indices showing high correlations with RI are the June-November ENSO and Atlantic warm pool indices, and the January-March North Atlantic oscillation index. It is found that variabilities of vertical wind shear and TC heat potential are important for TC RI in the hurricane main development region, whereas relative humidity at 500 hPa is the main factor responsible for TC RI in the eastern TNA. However, the large-scale oceanic and atmospheric variables analyzed in this study do not show an important role in TC RI in the Gulf of Mexico and the open ocean southeast and east of Florida. This suggests that other factors such as small-scale changes of oceanic and atmospheric variables or TC internal processes may be responsible for TC RI in these two regions. Additionally, the analyses indicate that large-scale atmospheric and oceanic variables are not critical to TC genesis and formation; however, once a tropical depression forms, large-scale climate variations play a role in TC intensification.

Small vs. Large Convective Cloud Objects from CERES Aqua Observations: Where are the Intraseasonal Variation Signals?

NASA Technical Reports Server (NTRS)

Xu, Kuan-Man

2016-01-01

During inactive phases of Madden-Julian oscillation (MJO), there are plenty of deep but small convective systems and far fewer deep and large ones. During active phases of MJO, a manifestation of an increase in the occurrence of large and deep cloud clusters results from an amplification of large-scale motions by stronger convective heating. This study is designed to quantitatively examine the roles of small and large cloud clusters during the MJO life cycle. We analyze the cloud object data from Aqua CERES observations for tropical deep convective (DC) and cirrostratus (CS) cloud object types according to the real-time multivariate MJO index. The cloud object is a contiguous region of the earth with a single dominant cloud-system type. The size distributions, defined as the footprint numbers as a function of cloud object diameters, for particular MJO phases depart greatly from the combined (8-phase) distribution at large cloud-object diameters due to the reduced/increased numbers of cloud objects related to changes in the large-scale environments. The medium diameter corresponding to the combined distribution is determined and used to partition all cloud objects into "small" and "large" groups of a particular phase. The two groups corresponding to the combined distribution have nearly equal numbers of footprints. The medium diameters are 502 km for DC and 310 km for cirrostratus. The range of the variation between two extreme phases (typically, the most active and depressed phases) for the small group is 6-11% in terms of the numbers of cloud objects and the total footprint numbers. The corresponding range for the large group is 19-44%. In terms of the probability density functions of radiative and cloud physical properties, there are virtually no differences between the MJO phases for the small group, but there are significant differences for the large groups for both DC and CS types. These results suggest that the intreseasonal variation signals reside at the large cloud clusters while the small cloud clusters represent the background noises resulting from various types of the tropical waves with different wavenumbers and propagation directions/speeds.

Being fat and smart: A comparative analysis of the fat-brain trade-off in mammals.

PubMed

Heldstab, Sandra A; van Schaik, Carel P; Isler, Karin

2016-11-01

Humans stand out among non-aquatic mammals by having both an extremely large brain and a relatively large amount of body fat. To understand the evolution of this human peculiarity we report a phylogenetic comparative study of 120 mammalian species, including 30 primates, using seasonal variation in adult body mass as a proxy of the tendency to store fat. Species that rely on storing fat to survive lean periods are expected to be less active because of higher costs of locomotion and have increased predation risk due to reduced agility. Because a fat-storage strategy reduces the net cognitive benefit of a large brain without reducing its cost, such species should be less likely to evolve a larger brain than non-fat-storing species. We therefore predict that the two strategies to buffer food shortages (storing body fat and cognitive flexibility) are compensatory, and therefore predict negative co-evolution between relative brain size and seasonal variation in body mass. This trade-off is expected to be stronger in predominantly arboreal species than in more terrestrial ones, as the cost of transporting additional adipose depots is higher for climbing than for horizontal locomotion. We did, indeed, find a significant negative correlation between brain size and coefficient of variation (CV) in body mass in both sexes for the subsample of arboreal species, both in all mammals and within primates. In predominantly terrestrial species, in contrast, this correlation was not significant. We therefore suggest that the adoption of habitually terrestrial locomotor habits, accompanied by a reduced reliance on climbing, has allowed for a primate of our body size the unique human combination of unusually large brains and unusually large adipose depots. Copyright © 2016 Elsevier Ltd. All rights reserved.

Large-scale vertical velocity, diabatic heating and drying profiles associated with seasonal and diurnal variations of convective systems observed in the GoAmazon2014/5 experiment

DOE PAGES

Tang, Shuaiqi; Xie, Shaocheng; Zhang, Yunyan; ...

2016-11-16

This study describes the characteristics of large-scale vertical velocity, apparent heating source ( Q 1) and apparent moisture sink ( Q 2) profiles associated with seasonal and diurnal variations of convective systems observed during the two intensive operational periods (IOPs) that were conducted from 15 February to 26 March 2014 (wet season) and from 1 September to 10 October 2014 (dry season) near Manaus, Brazil, during the Green Ocean Amazon (GoAmazon2014/5) experiment. The derived large-scale fields have large diurnal variations according to convective activity in the GoAmazon region and the morning profiles show distinct differences between the dry and wetmore » seasons. In the wet season, propagating convective systems originating far from the GoAmazon region are often seen in the early morning, while in the dry season they are rarely observed. Afternoon convective systems due to solar heating are frequently seen in both seasons. Accordingly, in the morning, there is strong upward motion and associated heating and drying throughout the entire troposphere in the wet season, which is limited to lower levels in the dry season. In the afternoon, both seasons exhibit weak heating and strong moistening in the boundary layer related to the vertical convergence of eddy fluxes. Here, a set of case studies of three typical types of convective systems occurring in Amazonia – i.e., locally occurring systems, coastal-occurring systems and basin-occurring systems – is also conducted to investigate the variability of the large-scale environment with different types of convective systems.« less

Large-scale vertical velocity, diabatic heating and drying profiles associated with seasonal and diurnal variations of convective systems observed in the GoAmazon2014/5 experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, Shuaiqi; Xie, Shaocheng; Zhang, Yunyan

2016-01-01

This study describes the characteristics of large-scale vertical velocity, apparent heating source ( Q 1) and apparent moisture sink ( Q 2) profiles associated with seasonal and diurnal variations of convective systems observed during the two intensive operational periods (IOPs) that were conducted from 15 February to 26 March 2014 (wet season) and from 1 September to 10 October 2014 (dry season) near Manaus, Brazil, during the Green Ocean Amazon (GoAmazon2014/5) experiment. The derived large-scale fields have large diurnal variations according to convective activity in the GoAmazon region and the morning profiles show distinct differences between the dry and wetmore » seasons. In the wet season, propagating convective systems originating far from the GoAmazon region are often seen in the early morning, while in the dry season they are rarely observed. Afternoon convective systems due to solar heating are frequently seen in both seasons. Accordingly, in the morning, there is strong upward motion and associated heating and drying throughout the entire troposphere in the wet season, which is limited to lower levels in the dry season. In the afternoon, both seasons exhibit weak heating and strong moistening in the boundary layer related to the vertical convergence of eddy fluxes. A set of case studies of three typical types of convective systems occurring in Amazonia – i.e., locally occurring systems, coastal-occurring systems and basin-occurring systems – is also conducted to investigate the variability of the large-scale environment with different types of convective systems.« less

Leaf Photosynthetic Parameters Related to Biomass Accumulation in a Global Rice Diversity Survey1[OPEN

PubMed Central

Zheng, Guangyong; Hamdani, Saber; Essemine, Jemaa; Song, Qingfeng; Wang, Hongru

2017-01-01

Mining natural variations is a major approach to identify new options to improve crop light use efficiency. So far, successes in identifying photosynthetic parameters positively related to crop biomass accumulation through this approach are scarce, possibly due to the earlier emphasis on properties related to leaf instead of canopy photosynthetic efficiency. This study aims to uncover rice (Oryza sativa) natural variations to identify leaf physiological parameters that are highly correlated with biomass accumulation, a surrogate of canopy photosynthesis. To do this, we systematically investigated 14 photosynthetic parameters and four morphological traits in a rice population, which consists of 204 U.S. Department of Agriculture-curated minicore accessions collected globally and 11 elite Chinese rice cultivars in both Beijing and Shanghai. To identify key components responsible for the variance of biomass accumulation, we applied a stepwise feature-selection approach based on linear regression models. Although there are large variations in photosynthetic parameters measured in different environments, we observed that photosynthetic rate under low light (Alow) was highly related to biomass accumulation and also exhibited high genomic inheritability in both environments, suggesting its great potential to be used as a target for future rice breeding programs. Large variations in Alow among modern rice cultivars further suggest the great potential of using this parameter in contemporary rice breeding for the improvement of biomass and, hence, yield potential. PMID:28739819

UVBY beta photometry of the young southern cluster NGC3293 and comparison with other young clusters

NASA Astrophysics Data System (ADS)

Shobbrook, R. R.

1980-09-01

Stromgren uvby photometry has been obtained for 42 members and beta photometry for 37 members of the young southern galactic cluster NGC 3293. The distance modulus obtained from using Crawford's beta/M(V) calibration is 12.75 mag, corresponding to a distance of 3.55 kpc. Comparison of the colour/colour and the HR diagrams of NGC 3293 with those of the five other young northern and southern clusters reveals large differences between the clusters which may possibly be due to metal abundance variations across the Galaxy. Apparently correlated with this effect is a variation of the luminosities of the lower main sequences over about 1 mag. The fainter stars in the southern clusters appear to be an average of 0.7 mag brighter than those in the northern clusters, but it is not certain at present how much of this difference is due to possible systematic errors in the beta index zero point between the northern and southern hemispheres.

Reconstruction of lightning channel geometry by localizing thunder sources

NASA Astrophysics Data System (ADS)

Bodhika, J. A. P.; Dharmarathna, W. G. D.; Fernando, Mahendra; Cooray, Vernon

2013-09-01

Thunder is generated as a result of a shock wave created by sudden expansion of air in the lightning channel due to high temperature variations. Even though the highest amplitudes of thunder signatures are generated at the return stroke stage, thunder signals generated at other events such as preliminary breakdown pulses also can be of amplitudes which are large enough to record using a sensitive system. In this study, it was attempted to reconstruct the lightning channel geometry of cloud and ground flashes by locating the temporal and spatial variations of thunder sources. Six lightning flashes were reconstructed using the recorded thunder signatures. Possible effects due to atmospheric conditions were neglected. Numerical calculations suggest that the time resolution of the recorded signal and 10 ms-1error in speed of sound leads to 2% and 3% errors, respectively, in the calculated coordinates. Reconstructed channel geometries for cloud and ground flashes agreed with the visual observations. Results suggest that the lightning channel can be successfully reconstructed using this technique.

Intra-Trackway Morphological Variations Due to Substrate Consistency: The El Frontal Dinosaur Tracksite (Lower Cretaceous, Spain)

PubMed Central

Razzolini, Novella L.; Vila, Bernat; Castanera, Diego; Falkingham, Peter L.; Barco, José Luis; Canudo, José Ignacio; Manning, Phillip L.; Galobart, Àngel

2014-01-01

An ichnological and sedimentological study of the El Frontal dinosaur tracksite (Early Cretaceous, Cameros basin, Soria, Spain) highlights the pronounced intra-trackway variation found in track morphologies of four theropod trackways. Photogrammetric 3D digital models revealed various and distinct intra-trackway morphotypes, which reflect changes in footprint parameters such as the pace length, the track length, depth, and height of displacement rims. Sedimentological analyses suggest that the original substrate was non-homogenous due to lateral changes in adjoining microfacies. Multidata analyses indicate that morphological differences in these deep and shallow tracks represent a part of a continuum of track morphologies and geometries produced by a gradient of substrate consistencies across the site. This implies that the large range of track morphologies at this site resulted from similar trackmakers crossing variable facies. The trackways at the El Frontal site present an exemplary case of how track morphology, and consequently potential ichnotaxa, can vary, even when produced by a single trackmaker. PMID:24699696

Effect of inter-annual variability in pasture growth and irrigation response on farm productivity and profitability based on biophysical and farm systems modelling.

PubMed

Vogeler, Iris; Mackay, Alec; Vibart, Ronaldo; Rendel, John; Beautrais, Josef; Dennis, Samuel

2016-09-15

Farm system and nutrient budget models are increasingly being used in analysis to inform on farm decision making and evaluate land use policy options at regional scales. These analyses are generally based on the use of average annual pasture yields. In New Zealand (NZ), like in many countries, there is considerable inter-annual variation in pasture growth rates, due to climate. In this study a modelling approach was used to (i) include inter-annual variability as an integral part of the analysis and (ii) test the approach in an economic analysis of irrigation in a case study within the Hawkes Bay Region of New Zealand. The Agricultural Production Systems Simulator (APSIM) was used to generate pasture dry matter yields (DMY) for 20 different years and under both dryland and irrigation. The generated DMY were linked to outputs from farm-scale modelling for both Sheep and Beef Systems (Farmaxx Pro) and Dairy Systems (Farmax® Dairy Pro) to calculate farm production over 20 different years. Variation in DMY and associated livestock production due to inter-annual variation in climate was large, with a coefficient of variations up to 20%. Irrigation decreased this inter-annual variation. On average irrigation, with unlimited available water, increased income by $831 to 1195/ha, but when irrigation was limited to 250mm/ha/year income only increased by $525 to 883/ha. Using pasture responses in individual years to capturing the inter-annual variation, rather than the pasture response averaged over 20years resulted in lower financial benefits. In the case study income from irrigation based on an average year were 10 to >20% higher compared with those obtained from individual years. Copyright © 2016 Elsevier B.V. All rights reserved.

Winds in the meteor zone over Trivandrum

NASA Astrophysics Data System (ADS)

Reddi, C. R.; Rajeev, K.; Ramakumar, Geetha

1991-04-01

The height profiles of the zonal and meridional wind obtained from the meteor wind radar data recorded at Trivandrum (8 deg 36 min N, 77 deg E) are presented. Large wind shears were found to exist in the meteor zone over Trivandrum. The profiles showed quasi-sinusoidal variations with altitude and vertical wavelength of the oscillation in the range 15-25 km. Further, there was a large day-to-day variability in the profiles obtained for the same local time on consecutive days. The results are discussed in the light of the winds due to tides and equatorial waves in the low latitudes. The implications of the large wind shears with reference to the local wind effects on the equatorial electrojet are outlined.

Evaluation of external and internal irradiation on uranium mining enterprise staff by tooth enamel EPR spectroscopy

NASA Astrophysics Data System (ADS)

Zhumadilov, Kassym; Ivannikov, Alexander; Khailov, Artem; Orlenko, Sergei; Skvortsov, Valeriy; Stepanenko, Valeriy; Kuterbekov, Kairat; Toyoda, Shin; Kazymbet, Polat; Hoshi, Masaharu

2017-11-01

In order to estimate radiation effects on uranium enterprise staff and population teeth samples were collected for EPR tooth enamel dosimetry from population of Stepnogorsk city and staff of uranium mining enterprise in Shantobe settlment (Akmola region, North of Kazakhstan). By measurements of tooth enamel EPR spectra, the total absorbed dose in the enamel samples and added doses after subtraction of the contribution of natural background radiation are determined. For the population of Stepnogorsk city average added dose value of 4 +/- 11 mGy with variation of 51 mGy was obtained. For the staff of uranium mining enterprise in Shantobe settlment average value of added dose 95 +/- 20 mGy, with 85 mGy variation was obtained. Higher doses and the average value and a large variation for the staff, probably is due to the contribution of occupational exposure.

Velocity structure of the shallow lunar crust

NASA Technical Reports Server (NTRS)

Gangi, A. F.; Yen, T. E.

1979-01-01

Data from the thumper shots of the Apollo 14 and Apollo 16 active seismic experiments, testing whether the velocity variation in the shallow lunar crust (depths less than or equal to 10 m) can be represented by a self-compacting-power-layer or by a constant-velocity-layer model, are analyzed. Although filtering and stacking improved the S/N ratios, it was found that measuring the arrival times or amplitudes of arrivals beyond 32 m was not possible. The data quality precluded a definitive distinction between the power-law velocity variation and the layered-velocity model. Furthermore, it was found that the shallow lunar regolith is made up of fine particles, which supports the idea of a 1/6 power-velocity model. Analysis of the amplitudes of first arrivals revealed large errors in the data due to variations in the geophone sensitivities and shot strengths; a least-squares method, that uses data redundancy was employed to eliminate them.

Seamless variation of isometric and anisometric dynamical integrity measures in basins's erosion

NASA Astrophysics Data System (ADS)

Belardinelli, P.; Lenci, S.; Rega, G.

2018-03-01

Anisometric integrity measures defined as improvement and generalization of two existing measures (LIM, local integrity measure, and IF, integrity factor) of the extent and compactness of basins of attraction are introduced. Non-equidistant measures make it possible to account for inhomogeneous sensitivities of the state space variables to perturbations, thus permitting a more confident and targeted identification of the safe regions. All four measures are used for a global dynamics analysis of the twin-well Duffing oscillator, which is performed by considering a nearly continuous variation of a governing control parameter, thanks to the use of parallel computation allowing reasonable CPU time. This improves literature results based on finite (and commonly large) variations of the parameter, due to computational constraints. The seamless evolution of key integrity measures highlights the fine aspects of the erosion of the safe domain with respect to the increasing forcing amplitude.

Understanding sources of uncertainty and bias error in models of human response to low amplitude sonic booms

NASA Astrophysics Data System (ADS)

Collmar, M.; Cook, B. G.; Cowart, R.; Freund, D.; Gavin, J.

2015-10-01

A pool of 240 subjects was exposed to a library of waveforms consisting of example signatures of low boom aircraft. The signature library included intentional variations in both loudness and spectral content, and were auralized using the Gulfstream SASS-II sonic boom simulator. Post-processing was used to quantify the impacts of test design decisions on the "quality" of the resultant database. Specific lessons learned from this study include insight regarding potential for bias error due to variations in loudness or peak over-pressure, sources of uncertainty and their relative importance on objective measurements and robustness of individual metrics to wide variations in spectral content. Results provide clear guidance for design of future large scale community surveys, where one must optimize the complex tradeoffs between the size of the surveyed population, spatial footprint of those participants, and the fidelity/density of objective measurements.

Modeling the Effects of Spacecraft Venting on Instrument Measurements of the Martian Atmosphere for an Elliptical Orbit

NASA Technical Reports Server (NTRS)

Petro, Elaine; Hughes, David

2011-01-01

Analysis has been performed for MAVEN mission. Due to the elliptical orbit, large pressure variations in orbit will be experienced, there is a need to understand how internal pressures change and the flux of gas from vents could potentially bias instrument measurements. Goal of this analysis is to predict the effect that atmospheric gases trapped and vented from spacecraft volumes could have on instrument measurements.

Brain strain uncertainty due to shape variation in and simplification of head angular velocity profiles.

PubMed

Zhao, Wei; Ji, Songbai

2017-04-01

Head angular velocity, instead of acceleration, is more predictive of brain strains. Surprisingly, no study exists that investigates how shape variation in angular velocity profiles affects brain strains, beyond characteristics such as peak magnitude and impulse duration. In this study, we evaluated brain strain uncertainty due to variation in angular velocity profiles and further compared with that resulting from simplifying the profiles into idealized shapes. To do so, we used reconstructed head impacts from American National Football League for shape extraction and simulated head uniaxial coronal rotations from onset to full stop. The velocity profiles were scaled to maintain an identical peak velocity magnitude and duration in order to isolate the shape for investigation. Element-wise peak maximum principal strains from 44 selected impacts were obtained. We found that the shape of angular velocity profile could significantly affect brain strain magnitude (e.g., percentage difference of 4.29-17.89 % in the whole brain relative to the group average, with cumulative strain damage measure (CSDM) uncertainty range of 23.9 %) but not pattern (correlation coefficient of 0.94-0.99). Strain differences resulting from simplifying angular velocity profiles into idealized shapes were largely within the range due to shape variation, in both percentage difference and CSDM (signed difference of 3.91 % on average, with a typical range of 0-6 %). These findings provide important insight into the uncertainty or confidence in the performance of kinematics-based injury metrics. More importantly, they suggest the feasibility to simplify head angular velocity profiles into idealized shapes, at least within the confinements of the profiles evaluated, to enable real-time strain estimation via pre-computation in the future.

Brain strain uncertainty due to shape variation in and simplification of head angular velocity profiles

PubMed Central

Zhao, Wei; Ji, Songbai

2016-01-01

Head angular velocity, instead of acceleration, is more predictive of brain strains. Surprisingly, no study exists that investigates how shape variation in angular velocity profiles affects brain strains, beyond characteristics such as peak magnitude and impulse duration. In this study, we evaluated brain strain uncertainty due to variation in angular velocity profiles, and further compared with that resulting from simplifying the profiles into idealized shapes. To do so, we used reconstructed head impacts from American National Football League for shape extraction, and simulated head uniaxial coronal rotations from onset to full stop. The velocity profiles were scaled to maintain an identical peak velocity magnitude and duration in order to isolate the shape for investigation. Element-wise peak maximum principal strains from 44 selected impacts were obtained. We found that the shape of angular velocity profile could significantly affect brain strain magnitude (e.g., percentage difference of 4.29–17.89% in the whole-brain relative to the group average, with cumulative strain damage measure (CSDM) uncertainty range of 23.9%) but not pattern (correlation coefficient of 0.94–0.99). Strain differences resulting from simplifying angular velocity profiles into idealized shapes were largely within the range due to shape variation, in both percentage difference and CSDM (signed difference of 3.91% on average, with a typical range of 0–6%). These findings provide important insight into the uncertainty or confidence in the performance of kinematics-based injury metrics. More importantly, they suggest the feasibility to simplify head angular velocity profiles into idealized shapes, at least within the confinements of the profiles evaluated, to enable real-time strain estimation via pre-computation in the future. PMID:27644441

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, W; Feigenberg, S; Yi, B

Purpose: To report practical issues and solutions in reconstructing and using 4DCT to account for respiratory motion in radiotherapy planning. Methods: Quiet breathing 4DCT was used to account for respiratory motion for patients with lung or upper abdomen tumor. A planning CT and a 4DCT were acquired consecutively with a Philips Brilliance CT scanner and Varian RPM System. The projections were reconstructed into 10 phases. In Pinnacle RTP system, we contour a GTV in each phase and unite all 10 GTVs as ITV. The ITV is then mapped to the planning CT. We describe practical issues, their causes, our solutionsmore » and reasoning during this process. Results: In 6 months, 9 issues were reported for 8 patients with lung cancer. For two patients, part of the GTV (∼50% and 10%) in planning CT fell outside the ITV in 4DCT. There was a 7 mm variation in first patient back position because less restricted immobilization had to be used. The second discrepancy was due to moderate variation in breathing amplitude. We extended the ITV to include the GTV since both variations may likely happen during treatment. A LUL tumor showed no motion due to a 10-s long no-breathing period. An RLL tumor appeared double due to an abnormally deeper breath at the tumor region. We repeated 4DCT reiterating the importance of quiet, regular breathing. One patient breathed too light to generate RPM signal. Two issues (no motion in lung, incomplete images in 90% phase) were due to incorrect tag positions. Two unexplainable errors disappeared when repeating reconstruction. In summary, 5 issues were patient-related and 4 were technique issues. Conclusion: Improving breathing regularity avoided large artifacts in 4DCT. One needs to closely monitor patient breathing. For uncontrollable variations, larger PTVs are necessary which requires appropriate communication between physics and the treating physician.« less

Environmental life cycle assessment of grain maize production: An analysis of factors causing variability.

PubMed

Boone, Lieselot; Van Linden, Veerle; De Meester, Steven; Vandecasteele, Bart; Muylle, Hilde; Roldán-Ruiz, Isabel; Nemecek, Thomas; Dewulf, Jo

2016-05-15

To meet the growing demand, high yielding, but environmentally sustainable agricultural plant production systems are desired. Today, life cycle assessment (LCA) is increasingly used to assess the environmental impact of these agricultural systems. However, the impact results are very diverse due to management decisions or local natural conditions. The impact of grain maize is often generalized and an average is taken. Therefore, we studied variation in production systems. Four types of drivers for variability are distinguished: policy, farm management, year-to-year weather variation and innovation. For each driver, scenarios are elaborated using ReCiPe and CEENE (Cumulative Exergy Extraction from the Natural Environment) to assess the environmental footprint. Policy limits fertilisation levels in a soil-specific way. The resource consumption is lower for non-sandy soils than for sandy soils, but entails however more eutrophication. Farm management seems to have less influence on the environmental impact when considering the CEENE only. But farm management choices such as fertiliser type have a large effect on emission-related problems (e.g. eutrophication and acidification). In contrast, year-to-year weather variation results in large differences in the environmental footprint. The difference in impact results between favourable and poor environmental conditions amounts to 19% and 17% in terms of resources and emissions respectively, and irrigation clearly is an unfavourable environmental process. The best environmental performance is obtained by innovation as plant breeding results in a steadily increasing yield over 25 years. Finally, a comparison is made between grain maize production in Flanders and a generically applied dataset, based on Swiss practices. These very different results endorse the importance of using local data to conduct LCA of plant production systems. The results of this study show decision makers and farmers how they can improve the environmental performance of agricultural systems, and LCA practitioners are alerted to challenges due to variation. Copyright © 2016 Elsevier B.V. All rights reserved.

Seasonal variation in physiological condition of Amblema plicata in the Upper Mississippi River

USGS Publications Warehouse

Monroe, E.M.; Newton, T.J.

2001-01-01

Measures of physiological condition are being used as sub-lethal endpoints in studies with unionids exposed to a variety of stressors, yet the natural seasonal variation in these measures are largely undocumented. We measured concentrations of glycogen in foot and mantle tissue and a tissue condition index (TCI) in Amblema plicata (Say 1817), about monthly, for 2 years in mussels that were: (1) obtained directly from the Upper Mississippi River (riverine group); and (2) relocated from the river into an artificial pond (relocated group). In both groups, we observed significant seasonal variation in all physiological indicators. Seasonal variation in glycogen was 72% in mantle and 52% in foot tissue and paralleled reproductive activity in this short-term breeder. In the relocated group, most of the variation in glycogen occurred during the first six months after relocation, suggesting that handling stress may have been a contributing factor. The significant seasonal variation in the TCI paralleled glycogen in riverine mussels. We observed tissue-specific differences in glycogen in the riverine group, but not in the relocated group. These data suggest that an interaction of environmental and biological factors influence the energetic status of mussels in natural populations. A better understanding of this variation is needed to interpret changes in physiological condition due to stressors such as relocation.

Gender classification in low-resolution surveillance video: in-depth comparison of random forests and SVMs

NASA Astrophysics Data System (ADS)

Geelen, Christopher D.; Wijnhoven, Rob G. J.; Dubbelman, Gijs; de With, Peter H. N.

2015-03-01

This research considers gender classification in surveillance environments, typically involving low-resolution images and a large amount of viewpoint variations and occlusions. Gender classification is inherently difficult due to the large intra-class variation and interclass correlation. We have developed a gender classification system, which is successfully evaluated on two novel datasets, which realistically consider the above conditions, typical for surveillance. The system reaches a mean accuracy of up to 90% and approaches our human baseline of 92.6%, proving a high-quality gender classification system. We also present an in-depth discussion of the fundamental differences between SVM and RF classifiers. We conclude that balancing the degree of randomization in any classifier is required for the highest classification accuracy. For our problem, an RF-SVM hybrid classifier exploiting the combination of HSV and LBP features results in the highest classification accuracy of 89.9 0.2%, while classification computation time is negligible compared to the detection time of pedestrians.

Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm

PubMed Central

Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong

2016-01-01

In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis. PMID:27959895

Unsupervised Cryo-EM Data Clustering through Adaptively Constrained K-Means Algorithm.

PubMed

Xu, Yaofang; Wu, Jiayi; Yin, Chang-Cheng; Mao, Youdong

2016-01-01

In single-particle cryo-electron microscopy (cryo-EM), K-means clustering algorithm is widely used in unsupervised 2D classification of projection images of biological macromolecules. 3D ab initio reconstruction requires accurate unsupervised classification in order to separate molecular projections of distinct orientations. Due to background noise in single-particle images and uncertainty of molecular orientations, traditional K-means clustering algorithm may classify images into wrong classes and produce classes with a large variation in membership. Overcoming these limitations requires further development on clustering algorithms for cryo-EM data analysis. We propose a novel unsupervised data clustering method building upon the traditional K-means algorithm. By introducing an adaptive constraint term in the objective function, our algorithm not only avoids a large variation in class sizes but also produces more accurate data clustering. Applications of this approach to both simulated and experimental cryo-EM data demonstrate that our algorithm is a significantly improved alterative to the traditional K-means algorithm in single-particle cryo-EM analysis.

Mutation Rate Variation is a Primary Determinant of the Distribution of Allele Frequencies in Humans

PubMed Central

Pritchard, Jonathan K.

2016-01-01

The site frequency spectrum (SFS) has long been used to study demographic history and natural selection. Here, we extend this summary by examining the SFS conditional on the alleles found at the same site in other species. We refer to this extension as the “phylogenetically-conditioned SFS” or cSFS. Using recent large-sample data from the Exome Aggregation Consortium (ExAC), combined with primate genome sequences, we find that human variants that occurred independently in closely related primate lineages are at higher frequencies in humans than variants with parallel substitutions in more distant primates. We show that this effect is largely due to sites with elevated mutation rates causing significant departures from the widely-used infinite sites mutation model. Our analysis also suggests substantial variation in mutation rates even among mutations involving the same nucleotide changes. In summary, we show that variable mutation rates are key determinants of the SFS in humans. PMID:27977673

Part-based deep representation for product tagging and search

NASA Astrophysics Data System (ADS)

Chen, Keqing

2017-06-01

Despite previous studies, tagging and indexing the product images remain challenging due to the large inner-class variation of the products. In the traditional methods, the quantized hand-crafted features such as SIFTs are extracted as the representation of the product images, which are not discriminative enough to handle the inner-class variation. For discriminative image representation, this paper firstly presents a novel deep convolutional neural networks (DCNNs) architect true pre-trained on a large-scale general image dataset. Compared to the traditional features, our DCNNs representation is of more discriminative power with fewer dimensions. Moreover, we incorporate the part-based model into the framework to overcome the negative effect of bad alignment and cluttered background and hence the descriptive ability of the deep representation is further enhanced. Finally, we collect and contribute a well-labeled shoe image database, i.e., the TBShoes, on which we apply the part-based deep representation for product image tagging and search, respectively. The experimental results highlight the advantages of the proposed part-based deep representation.

Solar Sail Topology Variations Due to On-Orbit Thermal Effects

NASA Technical Reports Server (NTRS)

Banik, Jeremy A.; Lively, Peter S.; Taleghani, Barmac K.; Jenkins, Chrostopher H.

2006-01-01

The objective of this research was to predict the influence of non-uniform temperature distribution on solar sail topology and the effect of such topology variations on sail performance (thrust, torque). Specifically considered were the thermal effects due to on orbit attitude control maneuvers. Such maneuvers are expected to advance the sail to a position off-normal to the sun by as much as 35 degrees; a solar sail initially deformed by typical pre-tension and solar pressure loads may suffer significant thermally induced strains due to the non-uniform heating caused by these maneuvers. This on-orbit scenario was investigated through development of an automated analytical shape model that iterates many times between sail shape and sail temperature distribution before converging on a final coupled thermal structural affected sail topology. This model utilizes a validated geometrically non-linear finite element model and a thermal radiation subroutine. It was discovered that temperature gradients were deterministic for the off-normal solar angle cases as were thermally induced strains. Performance effects were found to be moderately significant but not as large as initially suspected. A roll torque was detected, and the sail center of pressure shifted by a distance that may influence on-orbit sail control stability.

Application of the concept of biologically effective dose (BED) to patients with Vestibular Schwannomas treated by radiosurgery

PubMed Central

Millar, William T.; Lindquist, Christer; Nordström, Håkan; Lidberg, Pär; Gårding, Jonas

2013-01-01

In the application of stereotactic radiosurgery, using the Gamma Knife, there are large variations in the overall treatment time for the same prescription dose, given in a single treatment session, for different patients. This is due to not only changes in the activity of the Cobolt-60 sources, but also to variations in the number of iso-centers used, the collimator size for a particular iso-center, and the time gap between the different iso-centers. Although frequently viewed as a single dose treatment the concept of biologically effective dose (BED), incorporating concurrent fast and a slow components of repair of sublethal damage, would imply potential variations in BED because of the influence of these different variables associated with treatment. This was investigated in 26 patients, treated for Vestibular Schwannomas, using the Series B Gamma-Knife, between 1999 and 2005. The iso-center number varied between 2 and 13, and the overall treatment time from 25.4–129.58 min. The prescription doses varied from 10–14 Gy. To obtain physical dose and dose-rates from each iso-center, in a number of locations in the region of interest, a prototype version of the Leksell GammaPlan® was used. For an individual patient, BED values varied by up to 15% for a given physical iso-dose. This was due to variation in the dose prescription at different locations on that iso-dose. Between patients there was a decline in the range of BED values as the overall treatment time increased. This increased treatment time was partly a function of the slow decline in the activity of the sources with time but predominantly due to changes in the number of iso-centers used. Thus, variations in BED values did not correlate with prescription dose but was modified by the overall treatment time. PMID:29296371

Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays

PubMed Central

Berg, Jeremy J.; Birchler, James A.; Grote, Mark N.; Lorant, Anne; Quezada, Juvenal

2018-01-01

While the vast majority of genome size variation in plants is due to differences in repetitive sequence, we know little about how selection acts on repeat content in natural populations. Here we investigate parallel changes in intraspecific genome size and repeat content of domesticated maize (Zea mays) landraces and their wild relative teosinte across altitudinal gradients in Mesoamerica and South America. We combine genotyping, low coverage whole-genome sequence data, and flow cytometry to test for evidence of selection on genome size and individual repeat abundance. We find that population structure alone cannot explain the observed variation, implying that clinal patterns of genome size are maintained by natural selection. Our modeling additionally provides evidence of selection on individual heterochromatic knob repeats, likely due to their large individual contribution to genome size. To better understand the phenotypes driving selection on genome size, we conducted a growth chamber experiment using a population of highland teosinte exhibiting extensive variation in genome size. We find weak support for a positive correlation between genome size and cell size, but stronger support for a negative correlation between genome size and the rate of cell production. Reanalyzing published data of cell counts in maize shoot apical meristems, we then identify a negative correlation between cell production rate and flowering time. Together, our data suggest a model in which variation in genome size is driven by natural selection on flowering time across altitudinal clines, connecting intraspecific variation in repetitive sequence to important differences in adaptive phenotypes. PMID:29746459

The statistics of primordial density fluctuations

NASA Astrophysics Data System (ADS)

Barrow, John D.; Coles, Peter

1990-05-01

The statistical properties of the density fluctuations produced by power-law inflation are investigated. It is found that, even the fluctuations present in the scalar field driving the inflation are Gaussian, the resulting density perturbations need not be, due to stochastic variations in the Hubble parameter. All the moments of the density fluctuations are calculated, and is is argued that, for realistic parameter choices, the departures from Gaussian statistics are small and would have a negligible effect on the large-scale structure produced in the model. On the other hand, the model predicts a power spectrum with n not equal to 1, and this could be good news for large-scale structure.

Silicon microring resonators

NASA Astrophysics Data System (ADS)

Tan, Ying; Dai, Daoxin

2018-05-01

Silicon microring resonators (MRRs) are very popular for many applications because of the advantages of footprint compactness, easy scalability, and functional versatility. Ultra-compact silicon MRRs with box-like spectral responses are realized with a very large free-spectral range (FSR) by introducing bent directional couplers. The measured box-like spectral response has an FSR of >30 nm. The permanent wavelength-alignment techniques for MRRs are also presented, including the laser-induced local-oxidation technique as well as the local-etching technique. With these techniques, one can control finely the permanent wavelength shift, which is also large enough to compensate the random wavelength variation due to the random fabrication errors.

Vent modification of large ribbon parachutes to enhance cluster performance

NASA Technical Reports Server (NTRS)

Kolega, D. J.; Woodis, W. R.; Reuter, J. D.

1986-01-01

Due to uneven load sharing and lagging inflation rates, the design of the Large Main Parachute (LMP) cluster, used to recover the Space Shuttle steel case Solid Rocket Boosters, had to be modified. The cause of the problem was excessive variation in effective porosity in the crown area of the LMP during first stage inflation. The design modification consisted of adding horizontal ribbons above the existing vent band to reduce the vent porosity and better control the position and attitude of the vent lines. Performance of modified LMP's since introduction indicates that the load sharing between the clustered chutes has been significantly improved.

A new method of presentation the large-scale magnetic field structure on the Sun and solar corona

NASA Technical Reports Server (NTRS)

Ponyavin, D. I.

1995-01-01

The large-scale photospheric magnetic field, measured at Stanford, has been analyzed in terms of surface harmonics. Changes of the photospheric field which occur within whole solar rotation period can be resolved by this analysis. For this reason we used daily magnetograms of the line-of-sight magnetic field component observed from Earth over solar disc. We have estimated the period during which day-to-day full disc magnetograms must be collected. An original algorithm was applied to resolve time variations of spherical harmonics that reflect time evolution of large-scale magnetic field within solar rotation period. This method of magnetic field presentation can be useful enough in lack of direct magnetograph observations due to sometimes bad weather conditions. We have used the calculated surface harmonics to reconstruct the large-scale magnetic field structure on the source surface near the sun - the origin of heliospheric current sheet and solar wind streams. The obtained results have been compared with spacecraft in situ observations and geomagnetic activity. We tried to show that proposed technique can trace shon-time variations of heliospheric current sheet and short-lived solar wind streams. We have compared also our results with those obtained traditionally from potential field approximation and extrapolation using synoptic charts as initial boundary conditions.

The influence of bed friction variability due to land cover on storm-driven barrier island morphodynamics

USGS Publications Warehouse

Passeri, Davina L.; Long, Joseph W.; Plant, Nathaniel G.; Bilskie, Matthew V.; Hagen, Scott C.

2018-01-01

Variations in bed friction due to land cover type have the potential to influence morphologic change during storm events; the importance of these variations can be studied through numerical simulation and experimentation at locations with sufficient observational data to initialize realistic scenarios, evaluate model accuracy and guide interpretations. Two-dimensional in the horizontal plane (2DH) morphodynamic (XBeach) simulations were conducted to assess morphodynamic sensitivity to spatially varying bed friction at Dauphin Island, AL using hurricanes Ivan (2004) and Katrina (2005) as experimental test cases. For each storm, three bed friction scenarios were simulated: (1) a constant Chezy coefficient across land and water, (2) a constant Chezy coefficient across land and depth-dependent Chezy coefficients across water, and (3) spatially varying Chezy coefficients across land based on land use/land cover (LULC) data and depth-dependent Chezy coefficients across water. Modeled post-storm bed elevations were compared qualitatively and quantitatively with post-storm lidar data. Results showed that implementing spatially varying bed friction influenced the ability of XBeach to accurately simulate morphologic change during both storms. Accounting for frictional effects due to large-scale variations in vegetation and development reduced cross-barrier sediment transport and captured overwash and breaching more accurately. Model output from the spatially varying friction scenarios was used to examine the need for an existing sediment transport limiter, the influence of pre-storm topography and the effects of water level gradients on storm-driven morphodynamics.

Rolling Moments Due to Rolling and Yaw for Four Wing Models in Rotation

NASA Technical Reports Server (NTRS)

Knight, Montgomery; Wenzinger, Carl J

1932-01-01

This report presents the results of a series of autorotation and torque tests on four different rotating wing systems at various rates of roll and at several angles of yaw. The investigation covered an angle of attack range up to 90 degrees and angles of yaw of 0 degree, 5 degrees, 10 degrees, and 20 degrees. The tests were made in a 5-foot, closed-throat atmospheric wind tunnel. The object of the tests was primarily to determine the effects of various angles of yaw on the rolling moments of the rotating wings up to large angles of attack. It was found that at angles of attack above that of maximum lift the rolling moments on the wings due to yaw (or side slip) from 5 degrees to 20 degrees were roughly of the same magnitude as those due to rolling. There was a wide variation in magnitude of the rolling moment due to yaw angle. The rates and ranges of stable autorotation for the monoplane models were considerably increased by yaw, whereas for an unstaggered biplane they were little affected. The immediate cause of the rolling moment due to yaw is apparently the building up of large loads on the forward wing tip and the reduction of loads on the rearward wing tip.

A Drosophila model for toxicogenomics: Genetic variation in susceptibility to heavy metal exposure

PubMed Central

Luoma, Sarah E.; St. Armour, Genevieve E.; Thakkar, Esha

2017-01-01

The genetic factors that give rise to variation in susceptibility to environmental toxins remain largely unexplored. Studies on genetic variation in susceptibility to environmental toxins are challenging in human populations, due to the variety of clinical symptoms and difficulty in determining which symptoms causally result from toxic exposure; uncontrolled environments, often with exposure to multiple toxicants; and difficulty in relating phenotypic effect size to toxic dose, especially when symptoms become manifest with a substantial time lag. Drosophila melanogaster is a powerful model that enables genome-wide studies for the identification of allelic variants that contribute to variation in susceptibility to environmental toxins, since the genetic background, environmental rearing conditions and toxic exposure can be precisely controlled. Here, we used extreme QTL mapping in an outbred population derived from the D. melanogaster Genetic Reference Panel to identify alleles associated with resistance to lead and/or cadmium, two ubiquitous environmental toxins that present serious health risks. We identified single nucleotide polymorphisms (SNPs) associated with variation in resistance to both heavy metals as well as SNPs associated with resistance specific to each of them. The effects of these SNPs were largely sex-specific. We applied mutational and RNAi analyses to 33 candidate genes and functionally validated 28 of them. We constructed networks of candidate genes as blueprints for orthologous networks of human genes. The latter not only provided functional contexts for known human targets of heavy metal toxicity, but also implicated novel candidate susceptibility genes. These studies validate Drosophila as a translational toxicogenomics gene discovery system. PMID:28732062

Temporal variations of the anomalous oxygen component

NASA Technical Reports Server (NTRS)

Cummings, A. C.; Webber, W. R.

1983-01-01

Data from the cosmic ray experiment on Voyagers 1 and 2 was used to examine anomalous oxygen in the time period from launch in 1977 to the end of 1981. Several time periods were found where large periodic (typically 26 day) temporal variations of the oxygen intensity between approximately 5 - 15 MeV/nuc are present. Variations in intensity by up to a factor of 10 are observed during these periods. Several characteristics of these variations indicate that they are not higher energy extensions of the low energy particle (approximately 1 MeV/nuc) increases found in many corotating interaction regions (CIR's). Many of these periodic temporal variations are correlated with similar, but much smaller, recurrent variations in the 75 MeV proton rate. Voyager 1 and Voyager 2 counting rates were compared to estimate the local radial gradient for both the protons and the oxygen. The proton gradients during periods of both maximum and minumum fluxes are consistent with the overall positive radial gradients reported by others from Pioneer and near-Earth observations, supporting the view that these variations are due to local modulation of a source outside the radial range of project measurements. In contrast, the oxygen gradients during periods of maximum proton flux differ in sign from those during minimum proton fluxes, suggesting that the origin of the oxygen variations is different from that of the protons.

Matching OPC and masks on 300-mm lithography tools utilizing variable illumination settings

NASA Astrophysics Data System (ADS)

Palitzsch, Katrin; Kubis, Michael; Schroeder, Uwe P.; Schumacher, Karl; Frangen, Andreas

2004-05-01

CD control is crucial to maximize product yields on 300mm wafers. This is particularly true for DRAM frontend lithography layers, like gate level, and deep trench (capacitor) level. In the DRAM process, large areas of the chip are taken up by array structures, which are difficult to structure due to aggressive pitch requirements. Consequently, the lithography process is centered such that the array structures are printed on target. Optical proximity correction is applied to print gate level structures in the periphery circuitry on target. Only slight differences of the different Zernike terms can cause rather large variations of the proximity curves, resulting in a difference of isolated and semi-isolated lines printed on different tools. If the deviations are too large, tool specific OPC is needed. The same is true for deep trench level, where the length to width ratio of elongated contact-like structures is an important parameter to adjust the electrical properties of the chip. Again, masks with specific biases for tools with different Zernikes are needed to optimize product yield. Additionally, mask making contributes to the CD variation of the process. Theoretically, the CD deviation caused by an off-centered mask process can easily eat up the majority of the CD budget of a lithography process. In practice, masks are very often distributed intelligently among production tools, such that lens and mask effects cancel each other. However, only dose adjusting and mask allocation may still result in a high CD variation with large systematical contributions. By adjusting the illumination settings, we have successfully implemented a method to reduce CD variation on our advanced processes. Especially inner and outer sigma for annular illumination, and the numerical aperture, can be optimized to match mask and stepper properties. This process will be shown to overcome slight lens and mask differences effectively. The effects on lithography process windows have to be considered, nonetheless.

Quark mass variations of nuclear forces, BBN, and all that

NASA Astrophysics Data System (ADS)

Meissner, Ulf-G.

2014-03-01

In this talk, I discuss the modifications of the nuclear forces due to variations of the light quark masses and of the fine structure constant. This is based on the chiral nuclear effective field theory, that successfully describes a large body of data. The generation of the light elements in the Big Bang Nucleosynthesis provides important constraints on these modifications. In addition, I discuss the role of the anthropic principle in the triple-alpha process that underlies carbon and oxygen generation in hot stars. It appears that a fine-tuning of the quark masses and the fine structure constant within 2 to 3 per cent is required to make life on Earth viable. Supported in part by DFG, HGF and the BMBF.

A new approach to adaptive control of manipulators

NASA Technical Reports Server (NTRS)

Seraji, H.

1987-01-01

An approach in which the manipulator inverse is used as a feedforward controller is employed in the adaptive control of manipulators in order to achieve trajectory tracking by the joint angles. The desired trajectory is applied as an input to the feedforward controller, and the controller output is used as the driving torque for the manipulator. An adaptive algorithm obtained from MRAC theory is used to update the controller gains to cope with variations in the manipulator inverse due to changes of the operating point. An adaptive feedback controller and an auxiliary signal enhance closed-loop stability and achieve faster adaptation. Simulation results demonstrate the effectiveness of the proposed control scheme for different reference trajectories, and despite large variations in the payload.

a Spatiotemporal Aggregation Query Method Using Multi-Thread Parallel Technique Based on Regional Division

NASA Astrophysics Data System (ADS)

Liao, S.; Chen, L.; Li, J.; Xiong, W.; Wu, Q.

2015-07-01

Existing spatiotemporal database supports spatiotemporal aggregation query over massive moving objects datasets. Due to the large amounts of data and single-thread processing method, the query speed cannot meet the application requirements. On the other hand, the query efficiency is more sensitive to spatial variation then temporal variation. In this paper, we proposed a spatiotemporal aggregation query method using multi-thread parallel technique based on regional divison and implemented it on the server. Concretely, we divided the spatiotemporal domain into several spatiotemporal cubes, computed spatiotemporal aggregation on all cubes using the technique of multi-thread parallel processing, and then integrated the query results. By testing and analyzing on the real datasets, this method has improved the query speed significantly.

Analysis of grain characters in temperate grasses reveals distinctive patterns of endosperm organization associated with grain shape

PubMed Central

Drea, Sinéad

2012-01-01

Members of the core pooids represent the most important crops in temperate zones including wheat, barley, and oats. Their importance as crops is largely due to the grain, particularly the storage capabilities of the endosperm. In this study, a comprehensive survey of grain morphology and endosperm organization in representatives of wild and cultivated species throughout the core pooids was performed. As sister to the core pooid tribes Poeae, Aveneae, Triticeae, and Bromeae within the Pooideae subfamily, Brachypodium provides a taxonomically relevant reference point. Using macroscopic, histological, and molecular analyses distinct patterns of grain tissue organization in these species, focusing on the peripheral and modified aleurone, are described. The results indicate that aleurone organization is correlated with conventional grain quality characters such as grain shape and starch content. In addition to morphological and organizational variation, expression patterns of candidate gene markers underpinning this variation were examined. Features commonly associated with grains are largely defined by analyses on lineages within the Triticeae and knowledge of grain structure may be skewed as a result of the focus on wheat and barley. Specifically, the data suggest that the modified aleurone is largely restricted to species in the Triticeae tribe. PMID:23081982

The micro-environmental impact of volatile organic compound emissions from large-scale assemblies of people in a confined space

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dutta, Tanushree

Large-scale assemblies of people in a confined space can exert significant impacts on the local air chemistry due to human emissions of volatile organics. Variations of air-quality in such small scale can be studied by quantifying fingerprint volatile organic compounds (VOCs) such as acetone, toluene, and isoprene produced during concerts, movie screenings, and sport events (like the Olympics and the World Cup). This review summarizes the extent of VOC accumulation resulting from a large population in a confined area or in a small open area during sporting and other recreational activities. Apart from VOCs emitted directly from human bodies (e.g.,more » perspiration and exhaled breath), those released indirectly from other related sources (e.g., smoking, waste disposal, discharge of food-waste, and use of personal-care products) are also discussed. Although direct and indirect emissions of VOCs from human may constitute <1% of the global atmospheric VOCs budget, unique spatiotemporal variations in VOCs species within a confined space can have unforeseen impacts on the local atmosphere to lead to acute human exposure to harmful pollutants.« less

Maintenance of genetic variation in human personality: Testing evolutionary models by estimating heritability due to common causal variants and investigating the effect of distant inbreeding

PubMed Central

Verweij, Karin J.H.; Yang, Jian; Lahti, Jari; Veijola, Juha; Hintsanen, Mirka; Pulkki-Råback, Laura; Heinonen, Kati; Pouta, Anneli; Pesonen, Anu-Katriina; Widen, Elisabeth; Taanila, Anja; Isohanni, Matti; Miettunen, Jouko; Palotie, Aarno; Penke, Lars; Service, Susan K.; Heath, Andrew C.; Montgomery, Grant W.; Raitakari, Olli; Kähönen, Mika; Viikari, Jorma; Räikkönen, Katri; Eriksson, Johan G; Keltikangas-Järvinen, Liisa; Lehtimäki, Terho; Martin, Nicholas G.; Järvelin, Marjo-Riitta; Visscher, Peter M.; Keller, Matthew C.; Zietsch, Brendan P.

2012-01-01

Personality traits are basic dimensions of behavioural variation, and twin, family, and adoption studies show that around 30% of the between-individual variation is due to genetic variation. There is rapidly-growing interest in understanding the evolutionary basis of this genetic variation. Several evolutionary mechanisms could explain how genetic variation is maintained in traits, and each of these makes predictions in terms of the relative contribution of rare and common genetic variants to personality variation, the magnitude of nonadditive genetic influences, and whether personality is affected by inbreeding. Using genome-wide SNP data from >8,000 individuals, we estimated that little variation in the Cloninger personality dimensions (7.2% on average) is due to the combined effect of common, additive genetic variants across the genome, suggesting that most heritable variation in personality is due to rare variant effects and/or a combination of dominance and epistasis. Furthermore, higher levels of inbreeding were associated with less socially-desirable personality trait levels in three of the four personality dimensions. These findings are consistent with genetic variation in personality traits having been maintained by mutation-selection balance. PMID:23025612

[Correlation of intraocular pressure variation after visual field examination with 24-hour intraocular pressure variations in primary open-angle glaucoma].

PubMed

Noro, Takahiko; Nakamoto, Kenji; Sato, Makoto; Yasuda, Noriko; Ito, Yoshinori; Ogawa, Shumpei; Nakano, Tadashi; Tsuneoka, Hiroshi

2014-10-01

We retrospectively examined intraocular pressure variations after visual field examination in primary open angle glaucoma (POAG), together with its influencing factors and its association with 24-hour intraocular pressure variations. Subjects were 94 eyes (52 POAG patients) subjected to measurements of 24-hour intraocular pressure and of changes in intraocular pressure after visual field examination using a Humphrey Visual Field Analyzer. Subjects were classified into three groups according to the magnitude of variation (large, intermediate and small), and 24-hour intraocular pressure variations were compared among the three groups. Factors influencing intraocular pressure variations after visual field examination and those associated with the large variation group were investigated. Average intraocular pressure variation after visual field examination was -0.28 ± 1.90 (range - 6.0(-) + 5.0) mmHg. No significant influencing factors were identified. The intraocular pressure at 3 a.m. was significantly higher in the large variation group than other two groups (p < 0.001). Central corneal thickness was correlated with the large variation group (odds ratio = 1.04; 95% confidence interval, 1.01-1.07 ; p = 0.02). No particular tendencies in intraocular pressure variations were found after visual field examination. Increases in intraocular pressure during the night might be associated with large intraocular pressure variations after visual field examination.

Rectenna session: Micro aspects

NASA Technical Reports Server (NTRS)

Gutmann, R. J.

1980-01-01

Two micro aspects of rectenna design are discussed: evaluation of the degradation in net rectenna RF to DC conversion efficiency due to power density variations across the rectenna (power combining analysis) and design of Yagi-Uda receiving elements to reduce rectenna cost by decreasing the number of conversion circuits (directional receiving elements). The first of these involves resolving a fundamental question of efficiency potential with a rectenna, while the second involves a design modification with a large potential cost saving.

Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster.

PubMed

Tatarenkov, Andrey; Ayala, Francisco J

2007-08-01

We studied nucleotide sequence variation at the gene coding for dopa decarboxylase (Ddc) in seven populations of Drosophila melanogaster. Strength and pattern of linkage disequilibrium are somewhat distinct in the extensively sampled Spanish and Raleigh populations. In the Spanish population, a few sites are in strong positive association, whereas a large number of sites in the Raleigh population are associated nonrandomly but the association is not strong. Linkage disequilibrium analysis shows presence of two groups of haplotypes in the populations, each of which is fairly diverged, suggesting epistasis or inversion polymorphism. There is evidence of two forms of natural selection acting on Ddc. The McDonald-Kreitman test indicates a deficit of fixed amino acid differences between D. melanogaster and D. simulans, which may be due to negative selection. An excess of derived alleles at high frequency, significant according to the H-test, is consistent with the effect of hitchhiking. The hitchhiking may have been caused by directional selection downstream of the locus studied, as suggested by a gradual decrease of the polymorphism-to-divergence ratio. Altogether, the Ddc locus exhibits a complicated pattern of variation apparently due to several evolutionary forces. Such a complex pattern may be a result of an unusually high density of functionally important genes.

Selecting sagebrush seed sources for restoration in a variable climate: ecophysiological variation among genotypes

USGS Publications Warehouse

Germino, Matthew J.

2012-01-01

Big sagebrush (Artemisia tridentata) communities dominate a large fraction of the United States and provide critical habitat for a number of wildlife species of concern. Loss of big sagebrush due to fire followed by poor restoration success continues to reduce ecological potential of this ecosystem type, particularly in the Great Basin. Choice of appropriate seed sources for restoration efforts is currently unguided due to knowledge gaps on genetic variation and local adaptation as they relate to a changing landscape. We are assessing ecophysiological responses of big sagebrush to climate variation, comparing plants that germinated from ~20 geographically distinct populations of each of the three subspecies of big sagebrush. Seedlings were previously planted into common gardens by US Forest Service collaborators Drs. B. Richardson and N. Shaw, (USFS Rocky Mountain Research Station, Provo, Utah and Boise, Idaho) as part of the Great Basin Native Plant Selection and Increase Project. Seed sources spanned all states in the conterminous Western United States. Germination, establishment, growth and ecophysiological responses are being linked to genomics and foliar palatability. New information is being produced to aid choice of appropriate seed sources by Bureau of Land Management and USFS field offices when they are planning seed acquisitions for emergency post-fire rehabilitation projects while considering climate variability and wildlife needs.

Effect of the intra-layer potential distributions and spatial currents on the performance of graphene SymFETs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hasan, Mehdi; Sensale-Rodriguez, Berardi, E-mail: berardi.sensale@utah.edu

2015-09-15

In this paper, a two-dimensional (2-D) model for a graphene symmetric field effect transistor (SymFET), which considers (a) the intra-graphene layer potential distributions and (b) the internal current flows through the device, is presented and discussed. The local voltages along the graphene electrodes as well as the current-voltage characteristics of the device are numerically calculated based on a single-particle tunneling model. Our numerical results show that: (i) when the tunneling current is small, due to either a large tunneling thickness (≥ 2 atomic layers of BN) or a small coherence length, the voltage distributions along the graphene electrodes have almostmore » zero variations upon including these distributed effects, (ii) when the tunnel current is large, due to either a small tunneling thickness (∼ 1 atomic layer of BN) or due to a large coherence length, the local voltage distributions along the graphene electrodes become appreciable and the device behavior deviates from that predicted by a 1-D approximation. These effects, which are not captured in one-dimensional SymFET models, can provide a better understanding about the electron dynamics in the device and might indicate potential novel applications for this proposed device.« less

Large-Eddy Simulations of Noise Generation in Supersonic Jets at Realistic Engine Temperatures

NASA Astrophysics Data System (ADS)

Liu, Junhui; Corrigan, Andrew; Kailasanath, K.; Taylor, Brian

2015-11-01

Large-eddy simulations (LES) have been carried out to investigate the noise generation in highly heated supersonic jets at temperatures similar to those observed in high-performance jet engine exhausts. It is found that the exhaust temperature of high-performance jet engines can range from 1000K at an intermediate power to above 2000K at a maximum afterburning power. In low-temperature jets, the effects of the variation of the specific heat ratio as well as the radial temperature profile near the nozzle exit are small and are ignored, but it is not clear whether those effects can be also ignored in highly heated jets. The impact of the variation of the specific heat ratio is assessed by comparing LES results using a variable specific heat ratio with those using a constant specific heat ratio. The impact on both the flow field and the noise distributions are investigated. Because the total temperature near the nozzle wall can be substantially lower than the nozzle total temperature either due to the heating loss through the nozzle wall or due to the cooling applied near the wall, this lower wall temperature may impact the temperature in the shear layer, and thus impact the noise generation. The impact of the radial temperature profile on the jet noise generation is investigated by comparing results of lower nozzle wall temperatures with those of the adiabatic wall condition.

The Relationship of On-Call Work with Fatigue, Work-Home Interference, and Perceived Performance Difficulties.

PubMed

Ziebertz, Carla M; van Hooff, Madelon L M; Beckers, Debby G J; Hooftman, Wendela E; Kompier, Michiel A J; Geurts, Sabine A E

2015-01-01

This study examined the relationship between on-call duty exposure (active and total on-call hours a month, number of calls per duty) and employees' experiences of being on-call (stress due to unpredictability, ability to relax during inactive on-call periods, restrictions during on-call duties, on-call work demands, and satisfaction with compensation for on-call duties) on the one hand and fatigue, strain-based and time-based work-home interference (WHI), and perceived on-call performance difficulties (PPD) on the other hand. Cross-sectional survey data were collected among a large heterogeneous sample of Dutch employees (N = 5437). The final sample consisted of 157 on-call workers (23-69 years, 71% males). Data were analyzed by means of hierarchical regression analyses (controlling for age and job characteristics). Differences in on-call work exposure were not systematically related to fatigue, WHI, and PPD (all p's >0.50). The experience of being on-call explained a medium proportion of the variation in fatigue and strain-based WHI and a medium to large proportion of the variation in time-based WHI and PPD over and above the control variables. Our results suggest that it is employees' experience of being on-call, especially the experience of stress due to the unpredictability, rather than the amount of exposure, that is related to fatigue, WHI, and perceived on-call performance difficulties.

Tectonic Control of the Acid and Alkalinity Budgets of Chemical Weathering

NASA Astrophysics Data System (ADS)

Torres, M. A.; Dellinger, M.; Clark, K. E.; West, A. J.; Paris, G.; Bouchez, J.; Ponton, C.; Feakins, S. J.; Galy, V.; Hilton, R. G.; Adkins, J. F.

2016-12-01

The exchange of carbon between the rock reservoir and the ocean/atmosphere system modulates Earth's climate over geologic timescales. Central to our current conceptualization of this geologic C cycle is a mechanistic link between input and output fluxes that limits imbalances and prevents extreme variations in atmospheric pCO2. However, a quantitative understanding of how C cycle balance is maintained remains elusive due to the competition and co-variation between many distinct biogeochemical reactions. Here, we turn to river systems draining Andes/Amazon and other modern mountain ranges to inform our understanding of how major orogenies affect key C cycle fluxes.Globally, rivers draining active mountain ranges transport massive quantities of sulfate, alkalinity, and particulate organic carbon. Consequently, defining the exact effect of tectonic uplift on both atmospheric pCO2 and pO2 requires the careful partitioning of these fluxes between competing C and O cycle reactions. Using a suite of isotopic and trace element proxies, we find that the large mass fluxes exported by mountain rivers do not necessarily translate into a large C sink due to the oxidative weathering of trace reactive phases (e.g., pyrite). Our results also imply that mountain weathering may be an important O2 sink. The applicability and implications of these results are explored using reactive-transport modeling and a new carbonate-system framework for the links between C cycle reactions and atmospheric pCO2.

Is the negative IOD during 2016 the reason for monsoon failure over southwest peninsular India?

NASA Astrophysics Data System (ADS)

Sreelekha, P. N.; Babu, C. A.

2018-01-01

The study investigates the mechanism responsible for the deficit rainfall over southwest peninsular India during the 2016 monsoon season. Analysis shows that the large-scale variation in circulation pattern due to the strong, negative Indian Ocean Dipole phenomenon was the reason for the deficit rainfall. Significant reduction in the number of northward-propagating monsoon-organized convections together with fast propagation over the southwest peninsular India resulted in reduction in rainfall. On the other hand, their persistence for longer time over the central part of India resulted in normal rainfall. It was found that the strong convection over the eastern equatorial Indian Ocean creates strong convergence over that region. The combined effect of the sinking due to the well-developed Walker circulation originated over the eastern equatorial Indian Ocean and the descending limb of the monsoon Hadley cell caused strong subsidence over the western equatorial Indian Ocean. The tail of this large-scale sinking extended up to the southern parts of India. This hinders formation of monsoon-organized convections leading to a large deficiency of rainfall during monsoon 2016 over the southwest peninsular India.

Use of satellite gravimetry for estimating recent solid Earth changes

NASA Astrophysics Data System (ADS)

Ramillien, Guillaume

2014-05-01

Since its launch in March 2002, the Gravity Recovery & Climate Experiment (GRACE) satellite mission provides a global mapping of the time variations of the Earth's gravity field for the recent period. Official centers such as Center of Space Research (CSR) in Austin, TX, Jet Propulsion Laboratory (JPL) in Pasadena, CA and GeoForschungZentrum (GFZ) in Potsdam, Germany, provide 10-day and monthly solutions of Stokes coefficients (i.e., spherical harmonic coefficients of the geopotential) up to harmonic degree 50-60 (or, equivalently, a spatial resolution of 300-400 km) for the timespan 2002-2012. Tiny variations of the gravity measured by GRACE are mainly due to the total water storage change on continents. Therefore, these solutions of water mass can be used to correct other datasets, and then isolate the gravity signatures of large and sudden earthquakes, as well as of the continuous Post Glacial Rebound (PGR) rate. As these measured seasonal variations of continental hydrology represent the variations of water mass load, it is also possible to derive the deformation of the terrestrial surface associated to this varying load using Love numbers. These latter numbers are obtained by assuming an elastic Earth model. In the center of the Amazon basin, the seasonal displacements of the surface due to hydrology reach amplitudes of a few centimeters typically. Time-series of GRACE-based radial displacement of the surface can be analysed and compared with independent local GPS records for validation.

Quantifying hyporheic exchange dynamics in a highly regulated large river reach.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hammond, Glenn Edward; Zhou, T; Huang, M

Hyporheic exchange is an important mechanism taking place in riverbanks and riverbed sediments, where river water and shallow groundwater mix and interact with each other. The direction, magnitude, and residence time of the hyporheic flux that penetrates the river bed are critical for biogeochemical processes such as carbon and nitrogen cycling, and biodegradation of organic contaminants. Many approaches including field measurements and numerical methods have been developed to quantify the hyporheic exchanges in relatively small rivers. However, the spatial and temporal distributions of hyporheic exchanges in a large, regulated river reach remain less explored due to the large spatial domains,more » complexity of geomorphologic features and subsurface properties, and the great pressure gradient variations at the riverbed created by dam operations.« less

Segmentation of mosaicism in cervicographic images using support vector machines

NASA Astrophysics Data System (ADS)

Xue, Zhiyun; Long, L. Rodney; Antani, Sameer; Jeronimo, Jose; Thoma, George R.

2009-02-01

The National Library of Medicine (NLM), in collaboration with the National Cancer Institute (NCI), is creating a large digital repository of cervicographic images for the study of uterine cervix cancer prevention. One of the research goals is to automatically detect diagnostic bio-markers in these images. Reliable bio-marker segmentation in large biomedical image collections is a challenging task due to the large variation in image appearance. Methods described in this paper focus on segmenting mosaicism, which is an important vascular feature used to visually assess the degree of cervical intraepithelial neoplasia. The proposed approach uses support vector machines (SVM) trained on a ground truth dataset annotated by medical experts (which circumvents the need for vascular structure extraction). We have evaluated the performance of the proposed algorithm and experimentally demonstrated its feasibility.

Video-based face recognition via convolutional neural networks

NASA Astrophysics Data System (ADS)

Bao, Tianlong; Ding, Chunhui; Karmoshi, Saleem; Zhu, Ming

2017-06-01

Face recognition has been widely studied recently while video-based face recognition still remains a challenging task because of the low quality and large intra-class variation of video captured face images. In this paper, we focus on two scenarios of video-based face recognition: 1)Still-to-Video(S2V) face recognition, i.e., querying a still face image against a gallery of video sequences; 2)Video-to-Still(V2S) face recognition, in contrast to S2V scenario. A novel method was proposed in this paper to transfer still and video face images to an Euclidean space by a carefully designed convolutional neural network, then Euclidean metrics are used to measure the distance between still and video images. Identities of still and video images that group as pairs are used as supervision. In the training stage, a joint loss function that measures the Euclidean distance between the predicted features of training pairs and expanding vectors of still images is optimized to minimize the intra-class variation while the inter-class variation is guaranteed due to the large margin of still images. Transferred features are finally learned via the designed convolutional neural network. Experiments are performed on COX face dataset. Experimental results show that our method achieves reliable performance compared with other state-of-the-art methods.

Diversity and Assembling Processes of Bacterial Communities in Cryoconite Holes of a Karakoram Glacier.

PubMed

Ambrosini, Roberto; Musitelli, Federica; Navarra, Federico; Tagliaferri, Ilario; Gandolfi, Isabella; Bestetti, Giuseppina; Mayer, Christoph; Minora, Umberto; Azzoni, Roberto Sergio; Diolaiuti, Guglielmina; Smiraglia, Claudio; Franzetti, Andrea

2017-05-01

Cryoconite holes are small ponds that form on the surface of glaciers that contain a dark debris, the cryoconite, at the bottom and host active ecological communities. Differences in the structure of bacterial communities have been documented among Arctic and mountain glaciers, and among glaciers in different areas of the world. In this study, we investigated the structure of bacterial communities of cryoconite holes of Baltoro Glacier, a large (62 km in length and 524 km 2 of surface) glacier of the Karakoram, by high-throughput sequencing of the V5-V6 hypervariable regions of the 16S rRNA gene. We found that Betaproteobacteria dominated bacterial communities, with large abundance of genera Polaromonas, probably thanks to its highly versatile metabolism, and Limnohabitans, which may have been favoured by the presence of supraglacial lakes in the area where cryoconite holes were sampled. Variation in bacterial communities among different sampling areas of the glacier could be explained by divergent selective processes driven by variation in environmental conditions, particularly pH, which was the only environmental variable that significantly affected the structure of bacterial communities. This variability may be due to both temporal and spatial patterns of variation in environmental conditions.

Cranial and mandibular shape variation in the genus Carollia (Mammalia: Chiroptera) from Colombia: biogeographic patterns and morphological modularity.

PubMed

López-Aguirre, Camilo; Pérez-Torres, Jairo; Wilson, Laura A B

2015-01-01

Neotropical bats of the genus Carollia are widely studied due to their abundance, distribution and relevance for ecosystems. However, the ecomorphological boundaries of these species are poorly differentiated, and consequently correspondence between their geographic distribution, ecological plasticity and morphological variation remains unclear. In this study, patterns of cranial and mandibular morphological variation were assessed for Carollia brevicauda, C. castanea and C. perspicillata from Colombia. Using geometric morphometrics, morphological variation was examined with respect to: differences in intraspecific variation, morphological modularity and integration, and biogeographic patterns. Patterns of intraspecific variation were different for each species in both cranial and mandibular morphology, with functional differences apparent according to diet. Cranial modularity varied between species whereas mandibular modularity did not. High cranial and mandibular correlation reflects Cranium-Mandible integration as a functional unit. Similarity between the biogeographic patterns in C. brevicauda and C. perspicillata indicates that the Andes do not act as a barrier but rather as an independent region, isolating the morphology of Andean populations of larger-bodied species. The biogeographic pattern for C. castanea was not associated with the physiography of the Andes, suggesting that large body size does not benefit C. brevicauda and C. perspicillata in maintaining homogeneous morphologies among populations.

Cranial and mandibular shape variation in the genus Carollia (Mammalia: Chiroptera) from Colombia: biogeographic patterns and morphological modularity

PubMed Central

Pérez-Torres, Jairo; Wilson, Laura A. B.

2015-01-01

Neotropical bats of the genus Carollia are widely studied due to their abundance, distribution and relevance for ecosystems. However, the ecomorphological boundaries of these species are poorly differentiated, and consequently correspondence between their geographic distribution, ecological plasticity and morphological variation remains unclear. In this study, patterns of cranial and mandibular morphological variation were assessed for Carollia brevicauda, C. castanea and C. perspicillata from Colombia. Using geometric morphometrics, morphological variation was examined with respect to: differences in intraspecific variation, morphological modularity and integration, and biogeographic patterns. Patterns of intraspecific variation were different for each species in both cranial and mandibular morphology, with functional differences apparent according to diet. Cranial modularity varied between species whereas mandibular modularity did not. High cranial and mandibular correlation reflects Cranium-Mandible integration as a functional unit. Similarity between the biogeographic patterns in C. brevicauda and C. perspicillata indicates that the Andes do not act as a barrier but rather as an independent region, isolating the morphology of Andean populations of larger-bodied species. The biogeographic pattern for C. castanea was not associated with the physiography of the Andes, suggesting that large body size does not benefit C. brevicauda and C. perspicillata in maintaining homogeneous morphologies among populations. PMID:26413433

Thermal Phase Variations of WASP-12b: Defying Predictions

NASA Technical Reports Server (NTRS)

Cowan, Nicolas B.; Machalek, Pavel; Croll, Bryce; Shekhtman, Louis M.; Burrows, Adam; Deming, Drake; Greene, Tom; Hora, Joseph L.

2012-01-01

We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 micrometers. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared-(R(sub p)/R(sub *))(sup 2) = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 micrometers, respectively-indicate that the atmospheric opacity is greater at 3.6 than at 4.5 micrometers, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F(sub day)/F(sub *) = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 micrometers, respectively. We do not detect ellipsoidal variations at 3.6 micrometers, but our parameter uncertainties-estimated via prayer-bead Monte Carlo-keep this non-detection consistent with model predictions. At 4.5 micrometers, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 micrometer ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 micrometer transit depth becomes commensurate with the 3.6 micrometer depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much deeper 4.5 micrometer eclipse depth, consistent with a solar composition and modest temperature inversion. We suggest future observations that could distinguish between these two scenarios.

Thermal Phase Variations of WASP-12b: Defying Predictions

NASA Astrophysics Data System (ADS)

Cowan, Nicolas B.; Machalek, Pavel; Croll, Bryce; Shekhtman, Louis M.; Burrows, Adam; Deming, Drake; Greene, Tom; Hora, Joseph L.

2012-03-01

We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 μm. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared—(Rp /R *)2 = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 μm, respectively—indicate that the atmospheric opacity is greater at 3.6 than at 4.5 μm, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F day/F * = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 μm, respectively. We do not detect ellipsoidal variations at 3.6 μm, but our parameter uncertainties—estimated via prayer-bead Monte Carlo—keep this non-detection consistent with model predictions. At 4.5 μm, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 μm ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 μm transit depth becomes commensurate with the 3.6 μm depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much deeper 4.5 μm eclipse depth, consistent with a solar composition and modest temperature inversion. We suggest future observations that could distinguish between these two scenarios.

The Causal Connection Between Disc and Power-Law Variability in Hard State Black Hole X-Ray Binaries

NASA Technical Reports Server (NTRS)

Uttley, P.; Wilkinson, T.; Cassatella, P.; Wilms, J.; Pottschimdt, K.; Hanke, M.; Boeck, M.

2010-01-01

We use the XMM-Newton EPIC-pn instrument in timing mode to extend spectral time-lag studies of hard state black hole X-ray binaries into the soft X-ray band. \\Ve show that variations of the disc blackbody emission substantially lead variations in the power-law emission, by tenths of a second on variability time-scales of seconds or longer. The large lags cannot be explained by Compton scattering but are consistent with time-delays due to viscous propagation of mass accretion fluctuations in the disc. However, on time-scales less than a second the disc lags the power-law variations by a few ms, consistent with the disc variations being dominated by X-ray heating by the power-law, with the short lag corresponding to the light-travel time between the power-law emitting region and the disc. Our results indicate that instabilities in the accretion disc are responsible for continuum variability on time-scales of seconds or longer and probably also on shorter time-scales.

Global trends

NASA Technical Reports Server (NTRS)

Megie, G.; Chanin, M.-L.; Ehhalt, D.; Fraser, P.; Frederick, J. F.; Gille, J. C.; Mccormick, M. P.; Schoebert, M.; Bishop, L.; Bojkov, R. D.

1990-01-01

Measuring trends in ozone, and most other geophysical variables, requires that a small systematic change with time be determined from signals that have large periodic and aperiodic variations. Their time scales range from the day-to-day changes due to atmospheric motions through seasonal and annual variations to 11 year cycles resulting from changes in the sun UV output. Because of the magnitude of all of these variations is not well known and highly variable, it is necessary to measure over more than one period of the variations to remove their effects. This means that at least 2 or more times the 11 year sunspot cycle. Thus, the first requirement is for a long term data record. The second related requirement is that the record be consistent. A third requirement is for reasonable global sampling, to ensure that the effects are representative of the entire Earth. The various observational methods relevant to trend detection are reviewed to characterize their quality and time and space coverage. Available data are then examined for long term trends or recent changes in ozone total content and vertical distribution, as well as related parameters such as stratospheric temperature, source gases and aerosols.

Downstream movement of fall Chinook salmon juveniles in the lower Snake River reservoirs during winter and early spring

USGS Publications Warehouse

Tiffan, Kenneth F.; Kock, Tobias J.; Connor, William P.; Mullins, Frank; Steinhorst, R. Kirk

2012-01-01

We conducted a 3-year radiotelemetry study in the lower Snake River to (1) determine whether juvenile fall Chinook salmon Oncorhynchus tshawytscha pass dams during winter, when bypass systems and structures designed to prevent mortality are not operated; (2) determine whether downstream movement rate varies annually, seasonally, and from reservoir to reservoir; and (3) identify some of the factors that contribute to annual, seasonal, and spatial variation in downstream movement rate. Fall Chinook salmon juveniles moved downstream up to 169 km and at a sufficiently fast rate (7.5 km/d) such that large percentages (up to 93%) of the fish passed one or more dams during the winter. Mean downstream movement rate varied annually (9.2–11.3 km/d), increased from winter (7.5 km/d) to spring (16.4 km/d), and increased (from 6.9 to 16.8 km/d) as fish moved downstream from reservoir to reservoir. Fish condition factor at tagging explained some of the annual variation in downstream movement rate, whereas water particle velocity and temperature explained portions of the seasonal variation. An increase in migrational disposition as fish moved downstream helped to explain the spatial variation. The potential cost of winter movement might be reduced survival due to turbine passage at a time when the bypass systems and spillway passage structures are not operated. Efforts to understand and increase passage survival of winter migrants in large impoundments might help to rehabilitate some imperiled anadromous salmonid populations.

Climate and Edaphic Controls on Humid Tropical Forest Tree Height

NASA Astrophysics Data System (ADS)

Yang, Y.; Saatchi, S. S.; Xu, L.

2014-12-01

Uncertainty in the magnitude and spatial variations of forest carbon density in tropical regions is due to under sampling of forest structure from inventory plots and the lack of regional allometry to estimate the carbon density from structure. Here we quantify the variation of tropical forest structure by using more than 2.5 million measurements of canopy height from systematic sampling of Geoscience Laser Altimeter System (GLAS) satellite observations between 2004 to 2008 and examine the climate and edaphic variables influencing the variations. We used top canopy height of GLAS footprints (~ 0.25 ha) to grid the statistical mean and 90 percentile of samples at 0.5 degrees to capture the regional variability of large trees in tropics. GLAS heights were also aggregated based on a stratification of tropical regions using soil, elevation, and forest types. Both approaches provided consistent patterns of statistically dominant large trees and the least heterogeneity, both as strong drivers of distribution of high biomass forests. Statistical models accounting for spatial autocorrelation suggest that climate, soil and spatial features together can explain more than 60% of the variations in observed tree height information, while climate-only variables explains about one third of the first-order changes in tree height. Soil basics, including physical compositions such as clay and sand contents, chemical properties such as PH values and cation-exchange capacity, as well as biological variables such as organic matters, all present independent but statistically significant relationships to tree height variations. The results confirm other landscape and regional studies that soil fertility, geology and climate may jointly control a majority of the regional variations of forest structure in pan-tropics and influencing both biomass stocks and dynamics. Consequently, other factors such as biotic and disturbance regimes, not included in this study, may have less influence on regional variations but strongly mediate landscape and small-scale forest structure and dynamics.

Observed Variation in Carbon and Water Exchange Across Crop Types, Seasons, and Years in Un-irrigated Land of the Southern Great Plains

NASA Astrophysics Data System (ADS)

Fischer, M. L.; Billesbach, D. P.; Riley, W. J.; Berry, J. A.; Torn, M. S.

2004-12-01

Accurate prediction of the regional responses of carbon and water fluxes to changing climate, land use, and management requires models that are parameterized and tested against measurements made in multiple land cover types and over seasonal and inter-annual time scales. In particular, modelers predicting fluxes for un-irrigated agriculture are posed with the additional challenge of characterizing the onset and severity of water stress. We report results from three years of an ongoing series of measurement campaigns that quantify the spatial heterogeneity of land surface-atmosphere exchanges of carbon dioxide, water, and energy. Eddy covariance flux measurements were made in pastures and dominant crop types surrounding the US-DOE Atmospheric Radiation Measurement Program central facility near Lamont, Oklahoma (36.605 N, 97.485 W). Ancillary measurements included radiation budget, meteorology, soil moisture and temperature, leaf area index, plant biomass, and plant and soil carbon and nitrogen content. Within a given year, the dominant spatial variation in fluxes of carbon, water, and energy are caused by variations of land cover due to the distinct phenology of winter-spring (winter wheat) versus summer crops (e.g., pasture, sorghum, soybeans). Within crop and yearly variations were smaller. In 2002, variations in net ecosystem carbon exchange (NEE), for three closely spaced winter wheat fields was 10-20%. Variations between years for the same crop types were also large. Net primary production (NPP) of winter wheat in the spring of 2003 versus 2002 increased by a factor of two, while NEE increased by 35%. The large increase in production and NEE are positively correlated with precipitation, integrated over the previous summer-fall periods. We discuss the implications of these results by extracting and comparing factors relevant for parameterization of land surface models and by comparing crop yield with historic variations in yield at the landscape scale.

Truly sedentary? The multi-range tactic as a response to resource heterogeneity and unpredictability in a large herbivore.

PubMed

Couriot, Ophélie; Hewison, A J Mark; Saïd, Sonia; Cagnacci, Francesca; Chamaillé-Jammes, Simon; Linnell, John D C; Mysterud, Atle; Peters, Wibke; Urbano, Ferdinando; Heurich, Marco; Kjellander, Petter; Nicoloso, Sandro; Berger, Anne; Sustr, Pavel; Kroeschel, Max; Soennichsen, Leif; Sandfort, Robin; Gehr, Benedikt; Morellet, Nicolas

2018-05-01

Much research on large herbivore movement has focused on the annual scale to distinguish between resident and migratory tactics, commonly assuming that individuals are sedentary at the within-season scale. However, apparently sedentary animals may occupy a number of sub-seasonal functional home ranges (sfHR), particularly when the environment is spatially heterogeneous and/or temporally unpredictable. The roe deer (Capreolus capreolus) experiences sharply contrasting environmental conditions due to its widespread distribution, but appears markedly sedentary over much of its range. Using GPS monitoring from 15 populations across Europe, we evaluated the propensity of this large herbivore to be truly sedentary at the seasonal scale in relation to variation in environmental conditions. We studied movement using net square displacement to identify the possible use of sfHR. We expected that roe deer should be less sedentary within seasons in heterogeneous and unpredictable environments, while migratory individuals should be seasonally more sedentary than residents. Our analyses revealed that, across the 15 populations, all individuals adopted a multi-range tactic, occupying between two and nine sfHR during a given season. In addition, we showed that (i) the number of sfHR was only marginally influenced by variation in resource distribution, but decreased with increasing sfHR size; and (ii) the distance between sfHR increased with increasing heterogeneity and predictability in resource distribution, as well as with increasing sfHR size. We suggest that the multi-range tactic is likely widespread among large herbivores, allowing animals to track spatio-temporal variation in resource distribution and, thereby, to cope with changes in their local environment.

Large Diameter, Radiative Extinction Experiments with Decane Droplets in Microgravity

NASA Technical Reports Server (NTRS)

Easton, John; Tien, James; Dietrich, Daniel

1999-01-01

The extinction of a diffusion flame is of fundamental interest in combustion science. Linan, Law, and Chung and Law analytically and experimentally determined an extinction boundary in terms of droplet diameter and pressure for a single droplet due to Damkohler, or blowoff, extinction. More recently, other researchers demonstrated extinction due to finite rate kinetics in reduced gravity for free droplets of heptane. Chao modeled the effect of radiative heat loss on a quasi-steady spherically symmetric single droplet burning in the absence of buoyancy. They determined that for increasing droplet diameter, a second limit can be reached such that combustion is no longer possible. This second, larger droplet diameter limit arises due to radiative heat loss, which increases with increasing droplet and flame diameter. This increase in radiative heat loss arises due to an increase in the surface area of the flame. Recently, Marchese modeled fuel droplets with detailed chemistry and radiative effects, and compared the results to other work. The modeling also showed the importance of radiative loss and radiative extinction Experiments examined the behavior of a large droplet of decane burning in reduced gravity onboard the NASA Lewis DC-9 aircraft, but did not show a radiative extinction boundary due to g-jitter (Variations in gravitational level and direction) effects. Dietrich conducted experiments in the reduced gravity environment of the Space Shuttle. This work showed that the extinction diameter of methanol droplets increased when the initial diameter of the droplets was large (in this case, approximately 5 mm). Theoretical results agreed with these experimental results only when the theory included radiative effects . Radiative extinction was experimentally verified by Nayagam in a later Shuttle mission. The following work focuses on the combustion and extinction of a single fuel droplet. The goal is to experimentally determine a large droplet diameter limit that arises due to radiative heat loss from the flame to the surroundings.

Time variations in the mechanical characteristics of local crustal segments according to seismic observations

NASA Astrophysics Data System (ADS)

Kocharyan, G. G.; Gamburtseva, N. G.; Sanina, I. A.; Danilova, T. V.; Nesterkina, M. A.; Gorbunova, E. M.; Ivanchenko, G. N.

2011-04-01

The results of the seismic observations made with two different experimental setups are presented. In the first case, the signals produced by underground nuclear explosions at the Semipalatinsk Test Site were measured on a linear profile, which allowed one to definitely outline the areas where the mechanical properties of rocks experienced considerable time variations. In the second case, the waves excited by the open-pit mine blasts recorded at a small-aperture seismic array at the Mikhnevo Geophysical Station (Institute of Geosphere Dynamics, Russian Academy of Sciences) on the East European Platform favored the estimation of variations in the integral characteristics of the seismic path. Measurements in aseismic regions characterized by diverse geological structure and different tectonic conditions revealed similar effects of the strong dependency of seismic parameters on the time of explosions. Here, the variations experienced by the maximum amplitudes of oscillations and irrelevant to seasonal changes or local conditions reached a factor of two. The generic periods of these variations including the distinct annual rhythm are probably the fragments of a lower-frequency process. The obtained results suggest that these variations are due to changes in the stressstrain state of active fault zones, which, in turn, can be associated with the macroscale motion of large blocks triggered by tidal strains, tectonic forces and, possibly, variations in the rate of the Earth's rotation.

Possible causes of variation in acrylamide concentration in French fries prepared in food service establishments: an observational study.

PubMed

Sanny, M; Jinap, S; Bakker, E J; van Boekel, M A J S; Luning, P A

2012-05-01

Acrylamide is a probable human carcinogen, and its presence in a range of fried and oven-cooked foods has raised considerable health concern world-wide. Dietary intake studies observed significant variations in acrylamide concentrations, which complicate risk assessment and the establishment of effective control measures. The objective of this study was to obtain an insight into the actual variation in acrylamide concentrations in French fries prepared under typical conditions in a food service establishment (FSE). Besides acrylamide, frying time, frying temperature, and reducing sugars were measured and the actual practices at receiving, thawing and frying during French fries preparation were observed and recorded. The variation in the actual frying temperature contributed most to the variation in acrylamide concentrations, followed by the variation in actual frying time; no obvious effect of reducing sugars was found. The lack of standardised control of frying temperature and frying time (due to inadequate frying equipment) and the variable practices of food handlers seem to contribute most to the large variation and high acrylamide concentrations in French fries prepared in a restaurant type of FSE as compared to chain fast-food services, and institutional caterers. The obtained insights in this study can be used to develop dedicated control measures in FSE, which may contribute to a sustainable reduction in the acrylamide intake. Copyright © 2011 Elsevier Ltd. All rights reserved.

Spatial variation in below ground carbon cycling in a pristine peatland, driven by present and past vegetation

NASA Astrophysics Data System (ADS)

Mathijssen, Paul; Knorr, Klaus-Holger; Gałka, Mariusz; Borken, Werner

2017-04-01

Peat carbon cycling is controlled by both large scale factors, such as climate and hydrological setting, and small scale factors, such as microtopography, vegetation, litter quality, and rooting depth. These small scale factors commonly vary within peatlands, causing variation in the carbon balance at different locations within the same site. Understanding the relationship between small scale carbon cycling and vegetation helps us to assess the variation of carbon dynamics of peatlands, because vegetation composition acts as an integrator of factors such as microtopography, hydrology, and nutrient level. Variation in vegetation illustrates spatial variation of these underlying factors. Furthermore, the presence of certain plant species affects carbon cycling directly through litter quality or aeration through root tissues. In order to understand these within-site variations in terms of carbon cycling, we investigated carbon accumulation, decomposition, and biogeochemistry of pore waters along a transect of peat cores with changing vegetation and water levels in an ombrotrophic peatland in southern Patagonia. The transect ran from a Sphagnum magellanicum dominated spot with relatively high water table, to intermediately wet spots with mixed Sphagnum/shrubs vegetation, or dominated by Cyperaceae, eventually to a more elevated and drier spot dominated by cushion plants (mainly Astelia pumila). There were large differences in peat accumulation rates and peat densities, with faster peat growth and lower densities under Sphagnum, but overall carbon accumulation rates were quite similar in the various microenvironments. At most plots C/N ratios decreased with depth, concurrent with increasing humification index derived from FT-IR spectra. But under cushion plants this relation was opposite: more humification with depth, but also C/N ratios increases. This reflected the differing source material at depth under the cushion plants, and that the cushion plant peat layers were formed on top of Sphagnum peat. The divergent source material throughout a peat core makes it difficult to use C/N ratios to indicate peat decomposition rates. Although the low peat density and higher C/N ratios indicate that overall carbon turnover is slow at Sphagnum plots, pore water methane concentrations were elevated. At cushion plant plots, however, higher redox potentials exist until greater depths due to aerenchymous roots, inhibiting methane production and release. Our results demonstrate that large variation exists within pristine bogs, in terms of decomposition patterns, organic matter quality, and carbon turnover pathways, corresponding to variation in surface moisture levels and vegetation. Furthermore, variation in carbon cycling properties are maintained in buried peat layers and reflect more the organic material of that layer, than the current surface carbon dynamics.

Methanol production from Eucalyptus wood chips. Working Document 2. Vegetative propagation of Eucalypts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fishkind, H.H.

1982-04-01

The feasibility of large-scale plantation establishment by various methods was examined, and the following conclusions were reached: seedling plantations are limited in potential yield due to genetic variation among the planting stock and often inadequate supplies of appropriate seed; vegetative propagation by rooted cuttings can provide good genetic uniformity of select hybrid planting stock; however, large-scale production requires establishment and maintenance of extensive cutting orchards. The collection of shoots and preparation of cuttings, although successfully implemented in the Congo and Brazil, would not be economically feasible in Florida for large-scale plantations; tissue culture propagation of select hybrid eucalypts offers themore » only opportunity to produce the very large number of trees required to establish the energy plantation. The cost of tissue culture propagation, although higher than seedling production, is more than off-set by the increased productivity of vegetative plantations established from select hybrid Eucalyptus.« less

Scale Height variations with solar cycle in the ionosphere of Mars

NASA Astrophysics Data System (ADS)

Sanchez-Cano, Beatriz; Lester, Mark; Witasse, Olivier; Milan, Stephen E.; Hall, Benjamin E. S.; Cartacci, Marco; Radicella, Sandro M.; Blelly, Pierre-Louis

2015-04-01

The Mars Advanced Radar for Subsurface and Ionospheric Sounding (MARSIS) on board the Mars Express spacecraft has been probing the topside of the ionosphere of Mars since June 2005, covering currently almost one solar cycle. A good knowledge of the behaviour of the ionospheric variability for a whole solar period is essential since the ionosphere is strongly dependent on solar activity. Using part of this dataset, covering the years 2005 - 2012, differences in the shape of the topside electron density profiles have been observed. These variations seem to be linked to changes in the ionospheric temperature due to the solar cycle variation. In particular, Mars' ionospheric response to the extreme solar minimum between end-2007 and end-2009 followed a similar pattern to the response observed in the Earth's ionosphere, despite the large differences related to internal origin of the magnetic field between both planets. Plasma parameters such as the scale height as a function of altitude, the main peak characteristics (altitude, density), the total electron content (TEC), the temperatures, and the ionospheric thermal pressures show variations related to the solar cycle. The main changes in the topside ionosphere are detected during the period of very low solar minimum, when ionospheric cooling occurs. The effect on the scale height is analysed in detail. In contrast, a clear increase of the scale height is observed during the high solar activity period due to enhanced ionospheric heating. The scale height variation during the solar cycle has been empirically modelled. The results have been compared with other datasets such as radio-occultation and retarding potential analyser data from old missions, especially in low solar activity periods (e.g. Mariner 4, Viking 1 and 2 landers), as well as with numerical modelling.

Evidence of Temporal Variation of Titan Atmospheric Density in 2005-2013

NASA Technical Reports Server (NTRS)

Lee, Allan Y.; Lim, Ryan S.

2013-01-01

One major science objective of the Cassini mission is an investigation of Titan's atmosphere constituent abundances. Titan's atmospheric density is of interest not only to planetary scientists but also to mission design and mission control engineers. Knowledge of the dependency of Titan's atmospheric density with altitude is important because any unexpectedly high atmospheric density has the potential to tumble the spacecraft during a flyby. During low-altitude Titan flyby, thrusters are fired to counter the torque imparted on the spacecraft due to the Titan atmosphere. The denser the Titan's atmosphere is, the higher are the duty cycles of the thruster firings. Therefore thruster firing telemetry data could be used to estimate the atmospheric torque imparted on the spacecraft. Since the atmospheric torque imparted on the spacecraft is related to the Titan's atmospheric density, atmospheric densities are estimated accordingly. In 2005-2013, forty-three low-altitude Titan flybys were executed. The closest approach altitudes of these Titan flybys ranged from 878 to 1,074.8 km. Our density results are also compared with those reported by other investigation teams: Voyager-1 (in November 1980) and the Huygens Atmospheric Structure Instrument, HASI (in January 2005). From our results, we observe a temporal variation of the Titan atmospheric density in 2005-2013. The observed temporal variation is significant and it isn't due to the estimation uncertainty (5.8%, 1 sigma) of the density estimation methodology. Factors that contributed to this temporal variation have been conjectured but are largely unknown. The observed temporal variation will require synergetic analysis with measurements made by other Cassini science instruments and future years of laboratory and modeling efforts to solve. The estimated atmospheric density results are given in this paper help scientists to better understand and model the density structure of the Titan atmosphere.

Density and fluence dependence of lithium cell damage and recovery characteristics

NASA Technical Reports Server (NTRS)

Faith, T. J.

1971-01-01

Experimental results on lithium-containing solar cells point toward the lithium donor density gradient dN sub L/dw as being the crucial parameter in the prediction of cell behavior after irradiation by electrons. Recovery measurements on a large number of oxygen-rich and oxygen-lean lithium cells have confirmed that cell recovery speed is directly proportional to the value of the lithium gradient for electron fluences. Gradient measurements have also been correlated with lithium diffusion schedules. Results have shown that long diffusion times (25 h) with a paint-on source result in large cell-to-cell variations in gradient, probably due to a loss of the lithium source with time.

Loss of work productivity due to illness and medical treatment.

PubMed

Cockburn, I M; Bailit, H L; Berndt, E R; Finkelstein, S N

1999-11-01

We examined the effects on work productivity of treatment with antihistamines in a retrospective study using linked health claims data and daily work output records for a sample of nearly 6000 claims processors at a large insurance company, between 1993 and 1995. We explained the variation in work output depending on the subjects' demographic characteristics, their jobs, and whether they were treated with "sedating" versus "nonsedating" antihistamines for nasal allergies. Differences of up to 13% in productivity were found after the subjects took sedating or nonsedating antihistamines. The observed effect suggests substantial indirect economic costs, which up to now have been largely overlooked because work productivity has proved difficult to measure objectively.

Low Reynolds number airfoil survey, volume 1

NASA Technical Reports Server (NTRS)

Carmichael, B. H.

1981-01-01

The differences in flow behavior two dimensional airfoils in the critical chordlength Reynolds number compared with lower and higher Reynolds number are discussed. The large laminar separation bubble is discussed in view of its important influence on critical Reynolds number airfoil behavior. The shortcomings of application of theoretical boundary layer computations which are successful at higher Reynolds numbers to the critical regime are discussed. The large variation in experimental aerodynamic characteristic measurement due to small changes in ambient turbulence, vibration, and sound level is illustrated. The difficulties in obtaining accurate detailed measurements in free flight and dramatic performance improvements at critical Reynolds number, achieved with various types of boundary layer tripping devices are discussed.

Effect of Nanotube Film Thickness on the Performance of Nanotube-Silicon Hybrid Solar Cells

PubMed Central

Tune, Daniel D.; Shapter, Joseph G.

2013-01-01

The results of measurements on solar cells made from randomly aligned thin films of single walled carbon nanotubes (SWCNTs) on n-type monocrystalline silicon are presented. The films are made by vacuum filtration from aqueous TritonX-100 suspensions of large diameter arc-discharge SWCNTs. The dependence of the solar cell performance on the thickness of the SWCNT film is shown in detail, as is the variation in performance due to doping of the SWCNT film with SOCl2. PMID:28348358

Rectenna session: Micro aspects. [energy conversion

NASA Technical Reports Server (NTRS)

Gutmann, R. J.

1980-01-01

Two micro aspects of the rectenna design are addressed: evaluation of the degradation in net rectenna RF to DC conversion efficiency due to power density variations across the rectenna (power combining analysis) and design of Yagi-Uda receiving elements to reduce rectenna cost by decreasing the number of conversion circuits (directional receiving elements). The first of these micro aspects involves resolving a fundamental question of efficiency potential with a rectenna, while the second involves a design modification with a large potential cost saving.

Geomorphic and landform survey of Northern Appennine Range (NAR)

NASA Technical Reports Server (NTRS)

Marino, C. M. (Principal Investigator); Zilioli, E.

1977-01-01

The author has identified the following significant results. An approach to landslide hazard detection was developed through the analysis of satellite imagery (LANDSAT 2) showing many landslide areas that occur on marine silts and clays in northern Appennine Range in Italy. A landslide risk score was given for large areas by narrowing and extending well defined areas, whose behavior and reflectivity variation was due to upper surface changes. Results show that this methodology allows evolution pattern of clay outflows to be distinguished.

The Mesoscale Eddies and Kuroshio Transport in the Western North Pacific East of Taiwan from 8-year (2003-2010) Model Reanalysis

DTIC Science & Technology

2013-07-25

EOF . SVD 1 Introduction Mesoscale eddies are abundant in the ocean. Chelton et al. ( 2007 ), based on 10 years of altimetry sea surface height anomaly...transport. The dynamic height has a strong annual signal due to steric variations (Wang and Koblinsky 1996; Stammer 1997). Since our study is...JOE.2004.838334 Chelton DB, Schlax MG, Samelson RM, deSzoeke RA ( 2007 ) Global observations of large oceanic eddies. Geophys Res Lett 34, L15606. doi

An Energy-Based Thermodynamic Stabilization Framework for Hybrid Control Design of Large-Scale Aerospace Systems

DTIC Science & Technology

2009-02-27

exchanged by means of line-of-sight sensors that experience periodic communication dropouts due to agent motion. Variation in network topology in...respiratory, and cardiovascular function by man- ual control based on the clinician’s experience and intuition. Open-loop control by clinical personnel can be...to ap- pear. [29] W. M. Haddad and J. M. Bailey, "Closed-Loop Control for Intensive Care Unit Seda- tion," Best Prac. Res. Clinical Anaesthesiology

Interannual sedimentary effluxes of alkalinity in the southern North Sea: model results compared with summer observations

NASA Astrophysics Data System (ADS)

Pätsch, Johannes; Kühn, Wilfried; Dorothea Six, Katharina

2018-06-01

For the sediments of the central and southern North Sea different sources of alkalinity generation are quantified by a regional modelling system for the period 2000-2014. For this purpose a formerly global ocean sediment model coupled with a pelagic ecosystem model is adapted to shelf sea dynamics, where much larger turnover rates than in the open and deep ocean occur. To track alkalinity changes due to different nitrogen-related processes, the open ocean sediment model was extended by the state variables particulate organic nitrogen (PON) and ammonium. Directly measured alkalinity fluxes and those derived from Ra isotope flux observation from the sediment into the pelagic are reproduced by the model system, but calcite building and calcite dissolution are underestimated. Both fluxes cancel out in terms of alkalinity generation and consumption. Other simulated processes altering alkalinity in the sediment, like net sulfate reduction, denitrification, nitrification, and aerobic degradation, are quantified and compare well with corresponding fluxes derived from observations. Most of these fluxes exhibit a strong positive gradient from the open North Sea to the coast, where large rivers drain nutrients and organic matter. Atmospheric nitrogen deposition also shows a positive gradient from the open sea towards land and supports alkalinity generation in the sediments. An additional source of spatial variability is introduced by the use of a 3-D heterogenous porosity field. Due to realistic porosity variations (0.3-0.5) the alkalinity fluxes vary by about 4 %. The strongest impact on interannual variations of alkalinity fluxes is exhibited by the temporal varying nitrogen inputs from large rivers directly governing the nitrate concentrations in the coastal bottom water, thus providing nitrate necessary for benthic denitrification. Over the time investigated the alkalinity effluxes decrease due to the decrease in the nitrogen supply by the rivers.

ULTRAVIOLET ESCAPE FRACTIONS FROM GIANT MOLECULAR CLOUDS DURING EARLY CLUSTER FORMATION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Howard, Corey; Pudritz, Ralph; Klessen, Ralf

2017-01-01

The UV photon escape fraction from molecular clouds is a key parameter for understanding the ionization of the interstellar medium and extragalactic processes such as cosmic reionization. We present the ionizing photon flux and the corresponding photon escape fraction ( f {sub esc}) arising as a consequence of star cluster formation in a turbulent, 10{sup 6} M {sub ⊙} giant molecular cloud, simulated using the code FLASH. We make use of sink particles to represent young, star-forming clusters coupled with a radiative transfer scheme to calculate the emergent UV flux. We find that the ionizing photon flux across the cloudmore » boundary is highly variable in time and space due to the turbulent nature of the intervening gas. The escaping photon fraction remains at ∼5% for the first 2.5 Myr, followed by two pronounced peaks at 3.25 and 3.8 Myr with a maximum f {sub esc} of 30% and 37%, respectively. These peaks are due to the formation of large H ii regions that expand into regions of lower density, some of which reaching the cloud surface. However, these phases are short-lived, and f {sub esc} drops sharply as the H ii regions are quenched by the central cluster passing through high-density material due to the turbulent nature of the cloud. We find an average f {sub esc} of 15% with factor of two variations over 1 Myr timescales. Our results suggest that assuming a single value for f {sub esc} from a molecular cloud is in general a poor approximation, and that the dynamical evolution of the system leads to large temporal variation.« less

Asymmetries in ozone depressions between the polar stratospheres following a solar proton event

NASA Technical Reports Server (NTRS)

Maeda, K.; Heath, D. F.

1978-01-01

Ozone depletions in the polar stratosphere during the energetic solar proton event on 4 August 1972 were observed by the backscattered ultraviolet (BUV) experiments on the Nimbus 4 satellite. The observed ozone contents, the ozone depressions and their temporal variations above the 4 mb level exhibited distinct asymmetries between the northern and southern hemispheres. Since the ozone destroying solar particles precipitate rather symmetrically into the two polar atmospheres, due to the geomagnetic dipole field, it is suggested that these asymmetries may be explained in terms of the differences in dynamics between the summer and the winter polar atmospheres. In the summer (northern) hemisphere, the stratospheric and mesospheric ozone depletion and recovery are smooth functions of time due to the preponderance of undistributed orderly flow in this region. On the other hand, the temporal variation of the upper stratospheric ozone in the winter polar atmosphere (southern hemisphere) exhibits large amplitude irregularities. These characteristic differences between the two polar atmospheres are also evident in the vertical distributions of temperatures and winds observed by balloons and rocket soundings.

Fossil wood flora from the Siwalik Group of Arunachal Pradesh, India and its climatic and phytogeographic significance

NASA Astrophysics Data System (ADS)

Srivastava, Gaurav; Mehrotra, R. C.; Srikarni, C.

2018-02-01

The plant fossil records from the Siwalik Group of Arunachal Pradesh, India are far from satisfactory due to remoteness and dense vegetation of the area. We report seven fossil woods of which three belong to the Middle Siwalik (Subansiri Formation), while the rest are from the Upper Siwalik (Kimin Formation). The modern analogues of the fossils from the Middle Siwalik are Lophopetalum littorale (Celastraceae), Afzelia-Intsia and Sindora siamensis (Fabaceae) and from the Upper Siwalik are Miliusa velutina (Annonaceae), Calophyllum tomentosum and Kayea (Calophyllaceae) and Diospyros melanoxylon (Ebenaceae). The dominance of diffuse porosity in the fossil woods indicates a tropical climate with low seasonality (little variation) in temperature, while a high proportion of large vessels and simple perforation plates in the assemblage infer high precipitation during the deposition of the sediments. The aforesaid inference is in strong agreement with the previous quantitative reconstruction based on fossil leaves. Several modern analogues of the fossil taxa are now growing in low latitudes possibly due to an increase in seasonality (increased variation) in temperature caused by the rising Himalaya.

Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment Trees

PubMed Central

Renaud, Gabriel; Neves, Pedro; Folador, Edson Luiz; Ferreira, Carlos Gil; Passetti, Fabio

2011-01-01

Various research projects often involve determining the relative position of genomic coordinates, intervals, single nucleotide variations (SNVs), insertions, deletions and translocations with respect to genes and their potential impact on protein translation. Due to the tremendous increase in throughput brought by the use of next-generation sequencing, investigators are routinely faced with the need to annotate very large datasets. We present Segtor, a tool to annotate large sets of genomic coordinates, intervals, SNVs, indels and translocations. Our tool uses segment trees built using the start and end coordinates of the genomic features the user wishes to use instead of storing them in a database management system. The software also produces annotation statistics to allow users to visualize how many coordinates were found within various portions of genes. Our system currently can be made to work with any species available on the UCSC Genome Browser. Segtor is a suitable tool for groups, especially those with limited access to programmers or with interest to analyze large amounts of individual genomes, who wish to determine the relative position of very large sets of mapped reads and subsequently annotate observed mutations between the reads and the reference. Segtor (http://lbbc.inca.gov.br/segtor/) is an open-source tool that can be freely downloaded for non-profit use. We also provide a web interface for testing purposes. PMID:22069465

Patient and Facility Variation in Costs of VHA Heart Failure Patients

PubMed Central

Yoon, Jean; Fonarow, Gregg C.; Groeneveld, Peter W.; Teerlink, John; Whooley, Mary A.; Sahay, Anju; Heidenreich, Paul

2017-01-01

Objectives To determine the variation in annual health care costs among heart failure patients in the VA system. Background Heart failure is associated with considerable use of health care resources, but little is known about patterns in patient characteristics related to higher costs. Methods We obtained VA utilization and cost records for all patients with a diagnosis of heart failure in fiscal year 2010. We compared total VA costs by patient demographic factors, comorbid conditions, and facility where they were treated in bivariate analyses. We regressed total costs on patient factors alone; VA facility alone; and all factors combined to determine the relative contribution of patient factors and facility to explaining cost differences. Results There were 117,870 patients with heart failure, and their mean annual VA costs were $30,719 (SD=49,180) with more than half of their costs due to inpatient care. Patients at younger ages, of Hispanic or black race/ethnicity, diagnosed with comorbid drug use disorders, or who died during the year had the highest costs (all P<0.01). There was variation in costs by facility as mean adjusted costs ranged from approximately $15,000 to $48,000. In adjusted analyses patient factors alone explained more of the variation in health care costs (R2=0.116) compared to the facility where the patient was treated (R2=0.018). Conclusion A large variation in costs of heart failure patients was observed across facilities although this was explained largely by patient factors. Improving the efficiency of VA resource utilization may require increased scrutiny of high-cost patients to determine if adequate value is being delivered to those patients. PMID:26970829

Climatic factors contributing to long-term variations in surface fine dust concentration in the United States

NASA Astrophysics Data System (ADS)

Pu, Bing; Ginoux, Paul

2018-03-01

High concentrations of dust particles can cause respiratory problems and increase non-accidental mortality. Studies found fine dust (with an aerodynamic diameter of less than 2.5 µm) is an important component of the total PM2.5 mass in the western and central US in spring and summer and has positive trends. This work examines climatic factors influencing long-term variations in surface fine dust concentration in the US using station data from the Interagency Monitoring Protected Visual Environments (IMPROVE) network during 1990-2015. The variations in the fine dust concentration can be largely explained by the variations in precipitation, surface bareness, and 10 m wind speed. Moreover, including convective parameters such as convective inhibition (CIN) and convective available potential energy (CAPE) that reveal the stability of the atmosphere better explains the variations and trends over the Great Plains from spring to fall.While the positive trend of fine dust concentration in the southwestern US in spring is associated with precipitation deficit, the increase in fine dust over the central Great Plains in summer is largely associated with enhanced CIN and weakened CAPE, which are caused by increased atmospheric stability due to surface drying and lower-troposphere warming. The strengthening of the Great Plains low-level jet also contributes to the increase in fine dust concentration in the central Great Plains in summer via its positive correlation with surface winds and negative correlation with CIN.Summer dusty days in the central Great Plains are usually associated with a westward extension of the North Atlantic subtropical high that intensifies the Great Plains low-level jet and also results in a stable atmosphere with subsidence and reduced precipitation.

Spatial variations of sea level along the coast of Thailand: Impacts of extreme land subsidence, earthquakes and the seasonal monsoon

NASA Astrophysics Data System (ADS)

Saramul, Suriyan; Ezer, Tal

2014-11-01

The study addresses two important issues associated with sea level along the coasts of Thailand: first, the fast sea level rise and its spatial variation, and second, the monsoonal-driven seasonal variations in sea level. Tide gauge data that are more extensive than in past studies were obtained from several different local and global sources, and relative sea level rise (RSLR) rates were obtained from two different methods, linear regressions and non-linear Empirical Mode Decomposition/Hilbert-Huang Transform (EMD/HHT) analysis. The results show extremely large spatial variations in RSLR, with rates varying from ~ 1 mm y-1 to ~ 20 mm y-1; the maximum RSLR is found in the upper Gulf of Thailand (GOT) near Bangkok, where local land subsidence due to groundwater extraction dominates the trend. Furthermore, there are indications that RSLR rates increased significantly in all locations after the 2004 Sumatra-Andaman Earthquake and the Indian Ocean tsunami that followed, so that recent RSLR rates seem to have less spatial differences than in the past, but with high rates of ~ 20-30 mm y-1 almost everywhere. The seasonal sea level cycle was found to be very different between stations in the GOT, which have minimum sea level in June-July, and stations in the Andaman Sea, which have minimum sea level in February. The seasonal sea-level variations in the GOT are driven mostly by large-scale wind-driven set-up/set-down processes associated with the seasonal monsoon and have amplitudes about ten times larger than either typical steric changes at those latitudes or astronomical annual tides.

Adaptive Gas Turbine Engine Control for Deterioration Compensation Due to Aging

NASA Technical Reports Server (NTRS)

Litt, Jonathan S.; Parker, Khary I.; Chatterjee, Santanu

2003-01-01

This paper presents an ad hoc adaptive, multivariable controller tuning rule that compensates for a thrust response variation in an engine whose performance has been degraded though use and wear. The upset appears when a large throttle transient is performed such that the engine controller switches from low-speed to high-speed mode. A relationship was observed between the level of engine degradation and the overshoot in engine temperature ratio, which was determined to cause the thrust response variation. This relationship was used to adapt the controller. The method is shown to work very well up to the operability limits of the engine. Additionally, since the level of degradation can be estimated from sensor data, it would be feasible to implement the adaptive control algorithm on-line.

Enhanced sensitivity to the time variation of the fine-structure constant and m{p}/m{e} in diatomic molecules.

PubMed

Flambaum, V V; Kozlov, M G

2007-10-12

Sensitivity to temporal variation of the fundamental constants may be strongly enhanced in transitions between narrow close levels of different nature. This enhancement may be realized in a large number of molecules due to cancellation between the ground state fine-structure omega{f} and vibrational interval omega{v} [omega=omega{f}-nomega{v} approximately 0, delta omega/omega=K(2delta alpha/alpha+0.5 delta mu/mu), K>1, mu=m{p}/m{e}]. The intervals between the levels are conveniently located in microwave frequency range and the level widths are very small. Required accuracy of the shift measurements is about 0.01-1 Hz. As examples, we consider molecules Cl(+)(2), CuS, IrC, SiBr, and HfF(+).

Thermospheric O/N2 in the Sunlit Disk From More Than Five Years of GUVI/TIMED Observations

NASA Astrophysics Data System (ADS)

Craven, J. D.; Christensen, A. B.; Paxton, L. J.

2007-12-01

GUVI indirect observations of the thermospheric column density ratio, O/N2, in the sunlit hemisphere have been made on a nearly continuous basis from day 50 of 2002 to the present as part of the TIMED spacecraft mission. The basic large-scale spatial structure includes variations with local time (greater values in the morning), Universal Time (modulation at high latitudes due to the offset magnetic dipole), and season (greater values in the local winter hemisphere). These differences are seen to fade in the approach to solar minimum. Superposed on this reasonably well-behaved background structure are the complex, transient perturbations driven by auroral substorms and geomagnetic storms. The spatial and temporal variations are summarized in part by time-lapse movies

A Case Report of Salvage Radiotherapy for a Patient with Recurrent Gastric Cancer and Multiple Comorbidities Using Real-time MRI-guided Adaptive Treatment System

PubMed Central

Jeon, Seung Hyuck; Chie, Eui Kyu

2018-01-01

The stomach is one of the most deforming organs caused by respiratory motions and daily variation by food intake. Applying radiotherapy has been quite a challenge due to the high risk of missing the target as well as radiation exposure to large volumes of normal tissue. However, real-time magnetic resonance (MR)-guided radiotherapy with adaptive planning could focus the high dose radiation to the target area while minimizing neighboring normal tissue exposure and compensate for not only daily but real-time variation. Here is a case report of a patient with recurrent gastric cancer and multiple co-morbidities, unsuitable for both resection and chemotherapy, who underwent MR guided adaptive radiotherapy. PMID:29900091

Eco-Evolutionary Genomics of Chromosomal Inversions.

PubMed

Wellenreuther, Maren; Bernatchez, Louis

2018-05-03

Chromosomal inversions have long fascinated evolutionary biologists due to their suppression of recombination, which can protect co-adapted alleles. Emerging research documents that inversions are commonly linked to spectacular phenotypes and have a pervasive role in eco-evolutionary processes, from mating systems, social organisation, environmental adaptation, and reproductive isolation to speciation. Studies also reveal that inversions are taxonomically widespread, with many being old and large, and that balancing selection is commonly facilitating their maintenance. This challenges the traditional view that the role of balancing selection in maintaining variation is relatively minor. The ubiquitous importance of inversions in ecological and evolutionary processes suggests that structural variation should be better acknowledged and integrated in studies pertaining to the molecular basis of adaptation and speciation. Copyright © 2018 Elsevier Ltd. All rights reserved.

Spatial Variations of Turbulent Properties of Neutral Hydrogen Gas in the Small Magellanic Cloud Using Structure-function Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nestingen-Palm, David; Stanimirović, Snežana; González-Casanova, Diego F.

2017-08-10

We investigate spatial variations of turbulent properties in the Small Magellanic Cloud (SMC) by using neutral hydrogen (H i) observations. With the goal of testing the importance of stellar feedback on H i turbulence, we define central and outer SMC regions based on the star formation rate (SFR) surface density, as well as the H i integrated intensity. We use the structure function and the velocity channel analysis to calculate the power-law index ( γ ) for both underlying density and velocity fields in these regions. In all cases, our results show essentially no difference in γ between the centralmore » and outer regions. This suggests that H i turbulent properties are surprisingly homogeneous across the SMC when probed at a resolution of 30 pc. Contrary to recent suggestions from numerical simulations, we do not find a significant change in γ due to stellar feedback as traced by the SFR surface density. This could be due to the stellar feedback being widespread over the whole of the SMC, but more likely due to a large-scale gravitational driving of turbulence. We show that the lack of difference between central and outer SMC regions cannot be explained by the high optical depth H I.« less

The roles of convective entrainment in spatial distributions and temporal variations of precipitation over tropical oceans

NASA Astrophysics Data System (ADS)

Hirota, N.; Takayabu, Y. N.; Watanabe, M.; Kimoto, M.; Chikira, M.

2013-12-01

This study shows that a proper treatment of convective entrainment is essential in determining spatial distributions and temporal variations of precipitation by numerical experiments. They have performed and compared four experiments with different entrainment characteristics: a control (Ctl), no entrainment (NoEnt), original Arakawa Schubert (AS), and AS with simple empirical suppression of convection (ASRH). The fractional entrainment rate of AS and ASRH are constant for each cloud type and are very small near cloud base compared to Ctl, in which half of buoyancy-generated energy is consumed by the entrainment. Ctl well reproduces the spatial and temporal variations, whereas NoEnt and AS, which are very similar to each other, significantly underestimated the variations with the so-called the double ITCZ problem. The enhanced variations in Ctl are due to the larger entrainment that strengthens the coupling of convection and free tropospheric humidity. Time variations are also more realistic in Ctl; mid-height convection moistens mid-troposphere and large precipitation events occur after sufficient moisture is available. In contrast, deep convection is more frequent but with smaller precipitation amount in NoEnt and AS. ASRH shows smaller spatial but excessive temporal variations suggesting that its empirical suppression condition is too simple and a more sophisticated formulation is required for more realistic precipitation variations. This study was supported by the Ministry of Education, Culture, Sports, Science and Technology (GRENE), and by the Ministry of the Environment (2A-1201), Japan.

A Digital Map From External Forcing to the Final Surface Warming Pattern and its Seasonal Cycle

NASA Astrophysics Data System (ADS)

Cai, M.

2015-12-01

Historically, only the thermodynamic processes (e.g., water vapor, cloud, surface albedo, and atmospheric lapse rate) that directly influence the top of the atmosphere (TOA) radiative energy flux balance are considered in climate feedback analysis. One of my recent research areas is to develop a new framework for climate feedback analysis that explicitly takes into consideration not only the thermodynamic processes that the directly influence the TOA radiative energy flux balance but also the local dynamical (e.g., evaporation, surface sensible heat flux, vertical convections etc) and non-local dynamical (large-scale horizontal energy transport) processes in aiming to explain the warming asymmetry between high and low latitudes, between ocean and land, and between the surface and atmosphere. In the last 5-6 years, we have developed a coupled atmosphere-surface climate feedback-response analysis method (CFRAM) as a new framework for estimating climate feedback and sensitivity in coupled general circulation models with a full physical parameterization package. In the CFRAM, the isolation of partial temperature changes due to an external forcing alone or an individual feedback is achieved by solving the linearized infrared radiation transfer model subject to individual energy flux perturbations (external or due to feedbacks). The partial temperature changes are addable and their sum is equal to the (total) temperature change (in the linear sense). The CFRAM is used to isolate the partial temperature changes due to the external forcing, due to water vapor feedback, clouds, surface albedo, local vertical convection, and non-local atmospheric dynamical feedbacks, as well as oceanic heat storage. It has been shown that seasonal variations in the cloud feedback, surface albedo feedback, and ocean heat storage/dynamics feedback, directly caused by the strong annual cycle of insolation, contribute primarily to the large seasonal variation of polar warming. Furthermore, the CO2 forcing, and water vapor and atmospheric dynamics feedbacks add to the maximum polar warming in fall/winter.

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F₂ maize population.

PubMed

Chen, Zongliang; Wang, Baobao; Dong, Xiaomei; Liu, Han; Ren, Longhui; Chen, Jian; Hauck, Andrew; Song, Weibin; Lai, Jinsheng

2014-06-04

Understanding genetic control of tassel and ear architecture in maize (Zea mays L. ssp. mays) is important due to their relationship with grain yield. High resolution QTL mapping is critical for understanding the underlying molecular basis of phenotypic variation. Advanced populations, such as recombinant inbred lines, have been broadly adopted for QTL mapping; however, construction of large advanced generation crop populations is time-consuming and costly. The rapidly declining cost of genotyping due to recent advances in next-generation sequencing technologies has generated new possibilities for QTL mapping using large early generation populations. A set of 708 F2 progeny derived from inbreds Chang7-2 and 787 were generated and genotyped by whole genome low-coverage genotyping-by-sequencing method (average 0.04×). A genetic map containing 6,533 bin-markers was constructed based on the parental SNPs and a sliding-window method, spanning a total genetic distance of 1,396 cM. The high quality and accuracy of this map was validated by the identification of two well-studied genes, r1, a qualitative trait locus for color of silk (chromosome 10) and ba1 for tassel branch number (chromosome 3). Three traits of tassel and ear architecture were evaluated in this population, a total of 10 QTL were detected using a permutation-based-significance threshold, seven of which overlapped with reported QTL. Three genes (GRMZM2G316366, GRMZM2G492156 and GRMZM5G805008) encoding MADS-box domain proteins and a BTB/POZ domain protein were located in the small intervals of qTBN5 and qTBN7 (~800 Kb and 1.6 Mb in length, respectively) and may be involved in patterning of tassel architecture. The small physical intervals of most QTL indicate high-resolution mapping is obtainable with this method. We constructed an ultra-high-dentisy linkage map for the large early generation population in maize. Our study provides an efficient approach for fast detection of quantitative loci responsible for complex trait variation with high accuracy, thus helping to dissect the underlying molecular basis of phenotypic variation and accelerate improvement of crop breeding in a cost-effective fashion.

Sidereal variations deep underground in Tasmania

NASA Technical Reports Server (NTRS)

Humble, J. E.; Fenton, A. G.; Fenton, K. B.

1985-01-01

Data from the deep underground vertically directed muon telescopes at Poatina, Tasmania, have been used since 1972 for a number of investigations, including the daily intensity variations, atmospheric influences, and checking for possible effects due to the interplanetary magnetic field. These telescopes have a total sensitive area of only 3 square meters, with the result that the counting rate is low (about 1680 events per hour) and the statistical errors on the results are rather large. Consequently, it was decided several years ago to construct larger detectors for this station. The first of these telescopes has been in operation for two complete years, and the results from it are presented. Results from the new, more stable equipment at Poatina appear to confirm the existence of a first harmonic in the daily variations in sidereal time reported earlier, and are consistent with small or non-existent first harmonics in solar and anti-sidereal time. All the second harmonics appear to be small, if not zero at these energies.

Early life mortality and height in Indian states

PubMed Central

Coffey, Diane

2014-01-01

Height is a marker for health, cognitive ability and economic productivity. Recent research on the determinants of height suggests that postneonatal mortality predicts height because it is a measure of the early life disease environment to which a cohort is exposed. This article advances the literature on the determinants of height by examining the role of early life mortality, including neonatal mortality, in India, a large developing country with a very short population. It uses state level variation in neonatal mortality, postneonatal mortality, and pre-adult mortality to predict the heights of adults born between 1970 and 1983, and neonatal and postneonatal mortality to predict the heights of children born between 1995 and 2005. In contrast to what is found in the literature on developed countries, I find that state level variation in neonatal mortality is a strong predictor of adult and child heights. This may be due to state level variation in, and overall poor levels of, pre-natal nutrition in India. PMID:25499239

Sex Differences in Magical Ideation: A Community-Based Twin Study

PubMed Central

Karcher, Nicole R.; Slutske, Wendy S.; Kerns, John G.; Piasecki, Thomas M.; Martin, Nicholas G.

2014-01-01

Two questions regarding sex differences in magical ideation were investigated in this study: (1) whether there are mean level sex differences on the Magical Ideation Scale (MIS), and (2) whether there are quantitative and/or qualitative sex differences in the genetic contributions to variation on this scale. These questions were evaluated using data obtained from a large community sample of adult Australian twins (N=4,355) that included opposite-sex pairs. Participants completed a modified 15-item version of the MIS within a larger assessment battery. Women reported both higher means and variability on the MIS than men; this was also observed within families (in opposite-sex twin pairs). Biometric modeling indicated that the proportion of variation in MIS scores due to genetic influences (indicating quantitative sex differences) and the specific latent genetic contributions to this variation (indicating qualitative sex differences) were the same in men and women. These findings clarify the nature of sex differences in magical ideation and point to avenues for future research. PMID:24364500

Variation in Age and Size in Fennoscandian Three-Spined Sticklebacks (Gasterosteus aculeatus)

PubMed Central

DeFaveri, Jacquelin; Merilä, Juha

2013-01-01

Average age and maximum life span of breeding adult three-spined sticklebacks (Gasterosteus aculeatus) were determined in eight Fennoscandian localities with the aid of skeletochronology. The average age varied from 1.8 to 3.6 years, and maximum life span from three to six years depending on the locality. On average, fish from marine populations were significantly older than those from freshwater populations, but variation within habitat types was large. We also found significant differences in mean body size among different habitat types and populations, but only the population differences remained significant after accounting for variation due to age effects. These results show that generation length and longevity in three-spined sticklebacks can vary significantly from one locality to another, and that population differences in mean body size cannot be explained as a simple consequence of differences in population age structure. We also describe a nanistic population from northern Finland exhibiting long life span and small body size. PMID:24260496

Variation in age and size in Fennoscandian three-spined sticklebacks (Gasterosteus aculeatus).

PubMed

DeFaveri, Jacquelin; Merilä, Juha

2013-01-01

Average age and maximum life span of breeding adult three-spined sticklebacks (Gasterosteus aculeatus) were determined in eight Fennoscandian localities with the aid of skeletochronology. The average age varied from 1.8 to 3.6 years, and maximum life span from three to six years depending on the locality. On average, fish from marine populations were significantly older than those from freshwater populations, but variation within habitat types was large. We also found significant differences in mean body size among different habitat types and populations, but only the population differences remained significant after accounting for variation due to age effects. These results show that generation length and longevity in three-spined sticklebacks can vary significantly from one locality to another, and that population differences in mean body size cannot be explained as a simple consequence of differences in population age structure. We also describe a nanistic population from northern Finland exhibiting long life span and small body size.

Clustering of arc volcanoes caused by temperature perturbations in the back-arc mantle

PubMed Central

Lee, Changyeol; Wada, Ikuko

2017-01-01

Clustering of arc volcanoes in subduction zones indicates along-arc variation in the physical condition of the underlying mantle where majority of arc magmas are generated. The sub-arc mantle is brought in from the back-arc largely by slab-driven mantle wedge flow. Dynamic processes in the back-arc, such as small-scale mantle convection, are likely to cause lateral variations in the back-arc mantle temperature. Here we use a simple three-dimensional numerical model to quantify the effects of back-arc temperature perturbations on the mantle wedge flow pattern and sub-arc mantle temperature. Our model calculations show that relatively small temperature perturbations in the back-arc result in vigorous inflow of hotter mantle and subdued inflow of colder mantle beneath the arc due to the temperature dependence of the mantle viscosity. This causes a three-dimensional mantle flow pattern that amplifies the along-arc variations in the sub-arc mantle temperature, providing a simple mechanism for volcano clustering. PMID:28660880

Clustering of arc volcanoes caused by temperature perturbations in the back-arc mantle.

PubMed

Lee, Changyeol; Wada, Ikuko

2017-06-29

Clustering of arc volcanoes in subduction zones indicates along-arc variation in the physical condition of the underlying mantle where majority of arc magmas are generated. The sub-arc mantle is brought in from the back-arc largely by slab-driven mantle wedge flow. Dynamic processes in the back-arc, such as small-scale mantle convection, are likely to cause lateral variations in the back-arc mantle temperature. Here we use a simple three-dimensional numerical model to quantify the effects of back-arc temperature perturbations on the mantle wedge flow pattern and sub-arc mantle temperature. Our model calculations show that relatively small temperature perturbations in the back-arc result in vigorous inflow of hotter mantle and subdued inflow of colder mantle beneath the arc due to the temperature dependence of the mantle viscosity. This causes a three-dimensional mantle flow pattern that amplifies the along-arc variations in the sub-arc mantle temperature, providing a simple mechanism for volcano clustering.

Thickness dependence of optical properties of amorphous indium oxide thin films deposited by reactive evaporation

NASA Astrophysics Data System (ADS)

Uluta, K.; Deer, D.; Skarlatos, Y.

2006-08-01

The electrical conductivity and absorption coefficient of amorphous indium oxide thin films, thermally evaporated on glass substrates at room temperature, were evaluated. For direct transitions the variation of the optical band gap with thickness was determined and this variation was supposed to appear due to the variation of localized gap states, whereas the variation of conductivity with thickness was supposed to be due to the variation of carrier concentration. We attribute the variation of absorption coefficient with thickness to the variation of optical band gap energy rather than optical interference.

3D face recognition under expressions, occlusions, and pose variations.

PubMed

Drira, Hassen; Ben Amor, Boulbaba; Srivastava, Anuj; Daoudi, Mohamed; Slama, Rim

2013-09-01

We propose a novel geometric framework for analyzing 3D faces, with the specific goals of comparing, matching, and averaging their shapes. Here we represent facial surfaces by radial curves emanating from the nose tips and use elastic shape analysis of these curves to develop a Riemannian framework for analyzing shapes of full facial surfaces. This representation, along with the elastic Riemannian metric, seems natural for measuring facial deformations and is robust to challenges such as large facial expressions (especially those with open mouths), large pose variations, missing parts, and partial occlusions due to glasses, hair, and so on. This framework is shown to be promising from both--empirical and theoretical--perspectives. In terms of the empirical evaluation, our results match or improve upon the state-of-the-art methods on three prominent databases: FRGCv2, GavabDB, and Bosphorus, each posing a different type of challenge. From a theoretical perspective, this framework allows for formal statistical inferences, such as the estimation of missing facial parts using PCA on tangent spaces and computing average shapes.

The impact of disorder on charge transport in three dimensional quantum dot resonant tunneling structures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Puthen-Veettil, B., E-mail: b.puthen-veettil@unsw.edu.au; Patterson, R.; König, D.

Efficient iso-entropic energy filtering of electronic waves can be realized through nanostructures with three dimensional confinement, such as quantum dot resonant tunneling structures. Large-area deployment of such structures is useful for energy selective contacts but such configuration is susceptible to structural disorders. In this work, the transport properties of quantum-dot-based wide-area resonant tunneling structures, subject to realistic disorder mechanisms, are studied. Positional variations of the quantum dots are shown to reduce the resonant transmission peaks while size variations in the device are shown to reduce as well as broaden the peaks. Increased quantum dot size distribution also results in amore » peak shift to lower energy which is attributed to large dots dominating transmission. A decrease in barrier thickness reduces the relative peak height while the overall transmission increases dramatically due to lower “series resistance.” While any shift away from ideality can be intuitively expected to reduce the resonance peak, quantification allows better understanding of the tolerances required for fabricating structures based on resonant tunneling phenomena/.« less

Fast propagation of electromagnetic fields through graded-index media.

PubMed

Zhong, Huiying; Zhang, Site; Shi, Rui; Hellmann, Christian; Wyrowski, Frank

2018-04-01

Graded-index (GRIN) media are widely used for modeling different situations: some components are designed considering GRIN modulation, e.g., multi-mode fibers, optical lenses, or acousto-optical modulators; on the other hand, there are other components where the refractive-index variation is undesired due to, e.g., stress or heating; and finally, some effects in nature are characterized by a GRIN variation, like turbulence in air or biological tissues. Modeling electromagnetic fields propagating in GRIN media is then of high importance for optical simulation and design. Though ray tracing can be used to evaluate some basic effects in GRIN media, the field properties are not considered and evaluated. The general physical optics techniques, like finite element method or finite difference time domain, can be used to calculate fields in GRIN media, but they need great numerical effort or may even be impractical for large-scale components. Therefore, there still exists a demand for a fast physical optics model of field propagation through GRIN media on a large scale, which will be explored in this paper.

Phosphorus and nitrogen trajectories in the Mediterranean Sea (1950-2030): Diagnosing basin-wide anthropogenic nutrient enrichment

NASA Astrophysics Data System (ADS)

Powley, Helen R.; Krom, Michael D.; Van Cappellen, Philippe

2018-03-01

Human activities have significantly modified the inputs of land-derived phosphorus (P) and nitrogen (N) to the Mediterranean Sea (MS). Here, we reconstruct the external inputs of reactive P and N to the Western Mediterranean Sea (WMS) and Eastern Mediterranean Sea (EMS) over the period 1950-2030. We estimate that during this period the land derived P and N loads increased by factors of 3 and 2 to the WMS and EMS, respectively, with reactive P inputs peaking in the 1980s but reactive N inputs increasing continuously from 1950 to 2030. The temporal variations in reactive P and N inputs are imposed in a coupled P and N mass balance model of the MS to simulate the accompanying changes in water column nutrient distributions and primary production with time. The key question we address is whether these changes are large enough to be distinguishable from variations caused by confounding factors, specifically the relatively large inter-annual variability in thermohaline circulation (THC) of the MS. Our analysis indicates that for the intermediate and deep water masses of the MS the magnitudes of changes in reactive P concentrations due to changes in anthropogenic inputs are relatively small and likely difficult to diagnose because of the noise created by the natural circulation variability. Anthropogenic N enrichment should be more readily detectable in time series concentration data for dissolved organic N (DON) after the 1970s, and for nitrate (NO3) after the 1990s. The DON concentrations in the EMS are predicted to exhibit the largest anthropogenic enrichment signature. Temporal variations in annual primary production over the 1950-2030 period are dominated by variations in deep-water formation rates, followed by changes in riverine P inputs for the WMS and atmospheric P deposition for the EMS. Overall, our analysis indicates that the detection of basin-wide anthropogenic nutrient concentration trends in the MS is rendered difficult due to: (1) the Atlantic Ocean contributing the largest reactive P and N inputs to the MS, hence diluting the anthropogenic nutrient signatures, (2) the anti-estuarine circulation removing at least 45% of the anthropogenic nutrients inputs added to both basins of the MS between 1950 and 2030, and (3) variations in intermediate and deep water formation rates that add high natural noise to the P and N concentration trajectories.

Identifying Preserved Storm Events on Beaches from Trenches and Cores

NASA Astrophysics Data System (ADS)

Wadman, H. M.; Gallagher, E. L.; McNinch, J.; Reniers, A.; Koktas, M.

2014-12-01

Recent research suggests that even small scale variations in grain size in the shallow stratigraphy of sandy beaches can significantly influence large-scale morphology change. However, few quantitative studies of variations in shallow stratigraphic layers, as differentiated by variations in mean grain size, have been conducted, in no small part due to the difficulty of collecting undisturbed sediment cores in the energetic lower beach and swash zone. Due to this lack of quantitative stratigraphic grain size data, most coastal morphology models assume that uniform grain sizes dominate sandy beaches, allowing for little to no temporal or spatial variations in grain size heterogeneity. In a first-order attempt to quantify small-scale, temporal and spatial variations in beach stratigraphy, thirty-five vibracores were collected at the USACE Field Research Facility (FRF), Duck, NC, in March-April of 2014 using the FRF's Coastal Research and Amphibious Buggy (CRAB). Vibracores were collected at set locations along a cross-shore profile from the toe of the dune to a water depth of ~1m in the surf zone. Vibracores were repeatedly collected from the same locations throughout a tidal cycle, as well as pre- and post a nor'easter event. In addition, two ~1.5m deep trenches were dug in the cross-shore and along-shore directions (each ~14m in length) after coring was completed to allow better interpretation of the stratigraphic sequences observed in the vibracores. The elevations of coherent stratigraphic layers, as revealed in vibracore-based fence diagrams and trench data, are used to relate specific observed stratigraphic sequences to individual storm events observed at the FRF. These data provide a first-order, quantitative examination of the small-scale temporal and spatial variability of shallow grain size along an open, sandy coastline. The data will be used to refine morphological model predictions to include variations in grain size and associated shallow stratigraphy.

Variation pattern of particulate organic carbon and nitrogen in oceans and inland waters

NASA Astrophysics Data System (ADS)

Huang, Changchun; Jiang, Quanliang; Yao, Ling; Yang, Hao; Lin, Chen; Huang, Tao; Zhu, A.-Xing; Zhang, Yimin

2018-03-01

We examined the relationship between, and variations in, particulate organic carbon (POC) and particulate organic nitrogen (PON) based on previously acquired ocean and inland water data. The latitudinal dependency of POC / PON is significant between 20 and 90° N but weak in low-latitude areas and in the Southern Hemisphere. The mean values of POC / PON in the Southern Hemisphere and Northern Hemisphere were 7.40 ± 3.83 and 7.80 ± 3.92, respectively. High values of POC / PON appeared between 80-90 (12.2 ± 7.5) and 70-80° N (9.4 ± 6.4), while relatively low POC / PON was found from 20 (6.6 ± 2.8) to 40° N (6.7 ± 2.7). The latitudinal variation of POC / PON in the Northern Hemisphere is much stronger than in the Southern Hemisphere due to the influence of more terrestrial organic matter. Higher POC and PON could be expected in coastal waters. POC / PON growth ranged from 6.89 ± 2.38 to 7.59 ± 4.22 in the Northern Hemisphere, with an increasing rate of 0.0024 km from the coastal to open ocean. Variations of POC / PON in lake water also showed a similar latitude-variation tendency of POC / PON with ocean water but were significantly regulated by the lakes' morphology, trophic state and climate. Small lakes and high-latitude lakes prefer relatively high POC / PON, and large lakes and low-latitude lakes tend to prefer low POC / PON. The coupling relationship between POC and PON in oceans is much stronger than in inland waters. Variations in POC, PON and POC / PON in inland waters should receive more attention due to the implications of these values for the global carbon and nitrogen cycles and the indeterminacy of the relationship between POC and PON.

Variations of transparency derived from GOCI in the Bohai Sea and the Yellow Sea.

PubMed

Mao, Ying; Wang, Shengqiang; Qiu, Zhongfeng; Sun, Deyong; Bilal, Muhammad

2018-04-30

Secchi disk depth (Z sd ), represents water transparency which is an intuitive indicator of water quality and can be used to derive inherent optical properties, chlorophyll-a concentrations, and primary productivity. In this study, the Z sd was derived from the Geostationary Ocean Color Imager (GOCI) data over the Bohai Sea (BHS) and the Yellow Sea (YS) using a regional tuned model. To validate the GOCI derived Z sd observations, in situ data, were collected for the BHS and YS regions. Results showed a good agreement between the GOCI derived Z sd observations and in situ measurements with a determination coefficient of 0.90, root mean square error of 2.17 m and mean absolute percent error of 24.56%. Results for diurnal variations showed an increasing trend of Z sd at the first and then decreasing, and all the maxima of Z sd in the central areas of the BHS and YS were found in the midday. For seasonal variations, higher values of Z sd , both in range and intensity, were observed in summer compared with those in winter. The reasons to explain the variations of Z sd have also been explored. Solar zenith angle (SOLZ) has an impact on the daily dynamics of Z sd , due to the influence of SOLZ on the attenuation of light radiation in water. The influence level of SOLZ on Z sd is largely determined by the water bodies' composition. The significant seasonal variations are mainly controlled by the stability of the water column stratification, because it can lead to the sediment resuspension and influence the growth and distribution of phytoplankton. Runoff and sediment discharge are not the main factors that impact the seasonal dynamics of Z sd. Tidal currents and mean currents may have influences on the variations of Z sd . However, due to the lack of in situ measurements to support, further studies are still needed.

Quantifying Oldowan Stone Tool Production at Olduvai Gorge, Tanzania

PubMed Central

Reti, Jay S.

2016-01-01

Recent research suggests that variation exists among and between Oldowan stone tool assemblages. Oldowan variation might represent differential constraints on raw materials used to produce these stone implements. Alternatively, variation among Oldowan assemblages could represent different methods that Oldowan producing hominins utilized to produce these lithic implements. Identifying differential patterns of stone tool production within the Oldowan has implications for assessing how stone tool technology evolved, how traditions of lithic production might have been culturally transmitted, and for defining the timing and scope of these evolutionary events. At present there is no null model to predict what morphological variation in the Oldowan should look like. Without such a model, quantifying whether Oldowan assemblages vary due to raw material constraints or whether they vary due to differences in production technique is not possible. This research establishes a null model for Oldowan lithic artifact morphological variation. To establish these expectations this research 1) models the expected range of variation through large scale reduction experiments, 2) develops an algorithm to categorize archaeological flakes based on how they are produced, and 3) statistically assesses the methods of production behavior used by Oldowan producing hominins at the site of DK from Olduvai Gorge, Tanzania via the experimental model. Results indicate that a subset of quartzite flakes deviate from the null expectations in a manner that demonstrates efficiency in flake manufacture, while some basalt flakes deviate from null expectations in a manner that demonstrates inefficiency in flake manufacture. The simultaneous presence of efficiency in stone tool production for one raw material (quartzite) and inefficiency in stone tool production for another raw material (basalt) suggests that Oldowan producing hominins at DK were able to mediate the economic costs associated with stone tool procurement by utilizing high-cost materials more efficiently than is expected and low-cost materials in an inefficient manner. PMID:26808429

Inter-annual and Long-term Temperature Variations in the Mesopause Region at High Latitudes Generated by the Stratospheric QBO

NASA Technical Reports Server (NTRS)

Mayr, Hans G.; Mengel, John G.; Huang, Frank T.

2007-01-01

The Numerical Spectral Model (NSM) simulates the Quasi-biennial Oscillation (QBO) that dominates the zonal circulation of the lower stratosphere at low latitudes. In the model, the QBO is generated with parameterized small-scale gravity waves (GW), which are partially augmented in 3D with planetary waves owing to baroclinic instability. Due to GW filtering, the QBO extends into the upper mesosphere, evident in UARS zonal wind and TIMED temperature measurements. While the QBO zonal winds are confined to equatorial latitudes, even in simulations with latitude-independent wave source, the associated temperature variations extend to high latitudes. The meridional circulation redistributes some of the QBO energy to focus it partially onto the Polar Regions. The resulting QBO temperature variations away from the equator tend to increase at higher altitudes to produce inter-annual variations that can exceed 5 K in the polar mesopause region -- and our 3D model simulations show that the effect is variable from year to year and can produce large differences between the two hemispheres, presumably due to interactions involving the seasonal variations. Modeling studies with the NSM have shown that long-term variations can also be generated by the QBO interacting with the seasonal cycles through OW node-filtering. A 30-month QBO, optimally synchronized by the 6-month Semi-Annual Oscillation (SAO), thus produces a 5-year or semi-decadal (SD) oscillation -- and observational evidence for that has been provided by a recent analysis of stratospheric NCEP data. In a simulation with the 2D version of the NSM, this SD oscillation extends into the upper mesosphere, and we present results to show that the related temperature variations could contribute significantly to the long-term variations of the polar mesopause region. Quasi-decadal variations could furthermore arise from the modeled solar cycle modulations of the QBO and 12-month annual oscillation. Our numerical results are discussed in the context of the observed low summer temperatures reproduced by the model, to demonstrate that the above interannual and long-term variations could contribute significantly to the climatology of Polar Mesospheric Clouds (PMC) investigated by the Aeronomy of Ice in the Mesosphere (AIM) mission.

A BAYESIAN SPATIAL AND TEMPORAL MODELING APPROACH TO MAPPING GEOGRAPHIC VARIATION IN MORTALITY RATES FOR SUBNATIONAL AREAS WITH R-INLA.

PubMed

Khana, Diba; Rossen, Lauren M; Hedegaard, Holly; Warner, Margaret

2018-01-01

Hierarchical Bayes models have been used in disease mapping to examine small scale geographic variation. State level geographic variation for less common causes of mortality outcomes have been reported however county level variation is rarely examined. Due to concerns about statistical reliability and confidentiality, county-level mortality rates based on fewer than 20 deaths are suppressed based on Division of Vital Statistics, National Center for Health Statistics (NCHS) statistical reliability criteria, precluding an examination of spatio-temporal variation in less common causes of mortality outcomes such as suicide rates (SRs) at the county level using direct estimates. Existing Bayesian spatio-temporal modeling strategies can be applied via Integrated Nested Laplace Approximation (INLA) in R to a large number of rare causes of mortality outcomes to enable examination of spatio-temporal variations on smaller geographic scales such as counties. This method allows examination of spatiotemporal variation across the entire U.S., even where the data are sparse. We used mortality data from 2005-2015 to explore spatiotemporal variation in SRs, as one particular application of the Bayesian spatio-temporal modeling strategy in R-INLA to predict year and county-specific SRs. Specifically, hierarchical Bayesian spatio-temporal models were implemented with spatially structured and unstructured random effects, correlated time effects, time varying confounders and space-time interaction terms in the software R-INLA, borrowing strength across both counties and years to produce smoothed county level SRs. Model-based estimates of SRs were mapped to explore geographic variation.

Genome size variation affects song attractiveness in grasshoppers: evidence for sexual selection against large genomes.

PubMed

Schielzeth, Holger; Streitner, Corinna; Lampe, Ulrike; Franzke, Alexandra; Reinhold, Klaus

2014-12-01

Genome size is largely uncorrelated to organismal complexity and adaptive scenarios. Genetic drift as well as intragenomic conflict have been put forward to explain this observation. We here study the impact of genome size on sexual attractiveness in the bow-winged grasshopper Chorthippus biguttulus. Grasshoppers show particularly large variation in genome size due to the high prevalence of supernumerary chromosomes that are considered (mildly) selfish, as evidenced by non-Mendelian inheritance and fitness costs if present in high numbers. We ranked male grasshoppers by song characteristics that are known to affect female preferences in this species and scored genome sizes of attractive and unattractive individuals from the extremes of this distribution. We find that attractive singers have significantly smaller genomes, demonstrating that genome size is reflected in male courtship songs and that females prefer songs of males with small genomes. Such a genome size dependent mate preference effectively selects against selfish genetic elements that tend to increase genome size. The data therefore provide a novel example of how sexual selection can reinforce natural selection and can act as an agent in an intragenomic arms race. Furthermore, our findings indicate an underappreciated route of how choosy females could gain indirect benefits. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Insights on surface-water/groundwater exchange in the upper Floridan aquifer, north-central Florida (USA), from streamflow data and numerical modeling

NASA Astrophysics Data System (ADS)

Sutton, James E.; Screaton, Elizabeth J.; Martin, Jonathan B.

2015-03-01

Surface-water/groundwater exchange impacts water quality and budgets. In karst aquifers, these exchanges also play an important role in dissolution. Five years of river discharge data were analyzed and a transient groundwater flow model was developed to evaluate large-scale temporal and spatial variations of exchange between an 80-km stretch of the Suwannee River in north-central Florida (USA) and the karstic upper Floridan aquifer. The one-layer transient groundwater flow model was calibrated using groundwater levels from 59 monitoring wells, and fluxes were compared to the exchange calculated from discharge data. Both the numerical modeling and the discharge analysis suggest that the Suwannee River loses water under both low- and high-stage conditions. River losses appear greatest at the inside of a large meander, and the former river water may continue across the meander within the aquifer rather than return to the river. In addition, the numerical model calibration reveals that aquifer transmissivity is elevated within this large meander, which is consistent with enhanced dissolution due to river losses. The results show the importance of temporal and spatial variations in head gradients to exchange between streams and karst aquifers and dissolution of the aquifers.

The Relationship of On-Call Work with Fatigue, Work-Home Interference, and Perceived Performance Difficulties

PubMed Central

Ziebertz, Carla M.; van Hooff, Madelon L. M.; Beckers, Debby G. J.; Hooftman, Wendela E.; Kompier, Michiel A. J.; Geurts, Sabine A. E.

2015-01-01

Objectives. This study examined the relationship between on-call duty exposure (active and total on-call hours a month, number of calls per duty) and employees' experiences of being on-call (stress due to unpredictability, ability to relax during inactive on-call periods, restrictions during on-call duties, on-call work demands, and satisfaction with compensation for on-call duties) on the one hand and fatigue, strain-based and time-based work-home interference (WHI), and perceived on-call performance difficulties (PPD) on the other hand. Methods. Cross-sectional survey data were collected among a large heterogeneous sample of Dutch employees (N = 5437). The final sample consisted of 157 on-call workers (23–69 years, 71% males). Data were analyzed by means of hierarchical regression analyses (controlling for age and job characteristics). Results. Differences in on-call work exposure were not systematically related to fatigue, WHI, and PPD (all p's >0.50). The experience of being on-call explained a medium proportion of the variation in fatigue and strain-based WHI and a medium to large proportion of the variation in time-based WHI and PPD over and above the control variables. Conclusions. Our results suggest that it is employees' experience of being on-call, especially the experience of stress due to the unpredictability, rather than the amount of exposure, that is related to fatigue, WHI, and perceived on-call performance difficulties. PMID:26558276

Skin care practice in German nursing homes: a German-wide cross-sectional study.

PubMed

Kottner, Jan; Rahn, Yasmin; Blume-Peytavi, Ulrike; Lahmann, Nils

2013-04-01

Due to anatomical and physiological changes in the course of aging and due to increased vulnerability, there are special skin care needs in elderly and care-dependent persons. Little is known about skin care practice in German long-term care facilities. The aim of the study was to gather epidemiological data about skin care practice in German nursing homes. In spring 2012 a German-wide cross sectional study was conducted in 47 nursing homes. Based on standardized data collection sheets. demographics and variables about methods and frequencies of skin cleansing and application of skin care products for 3 552 nursing home residents were collected and analyzed. The variables age, gender and level of care dependency was representative for the group of all German nursing home residents. More than 90% of investigated nursing home residents required skin care assistance. Washing body parts or the whole body were conducted most frequently (89.1%, 95% CI 88.0- 90.1). Skin care leave-on products were used in 91.7% (95% CI 90.7-92.6), whereas there were large variations between individuals. In total, more than 100 brands were used. Skin care practice in multimorbid care dependent persons shows large variations. How skin care products meet the special requirements of aged skin and whether they enhance the skin barrier function and prevent cuteneous skin damage is unknown. © The Authors • Journal compilation © Blackwell Verlag GmbH, Berlin.

Detection of Traveling Ionospheric Disturbances by Medium Frequency Doppler Sounding Using AM Radio Transmissions

NASA Astrophysics Data System (ADS)

Chilcote, M. A.; Labelle, J. W.; Lind, F. D.; Coster, A. J.; Galkin, I. A.; Miller, E.; Weatherwax, A. T.

2013-12-01

Nighttime traveling ionosphere disturbances (TIDs) propagating in the lower F region of the ionosphere were detected from time variations in the Doppler shifts of commercial AM radio broadcast stations. Three separately deployed receivers, components of the Intercepted Signals for Ionospheric Science (ISIS) Array software radio instrumentation network, recorded signals from two radio stations during eleven nights in March-April, 2012. Combining these measurements established that variations in the frequencies of the received signals, with amplitudes up to a few tenths of a Hertz, resulted from Doppler shifts produced by the ionosphere. At times, TIDs were detected as large amplitude variations in the Doppler shift with approximately 40-minute period correlated across the array. For one study interval, 0000-0400 UT on April 13, 2012, simultaneous GPS-TEC, digisonde, and superDARN coherent backscatter radar measurements confirmed the detection of TIDs with the same period. Detection of the AM signals at widely spaced receivers allowed the phase velocity and wavelength of the TIDs to be inferred, with some limitations due to differing reflection heights for the different frequencies. These measurements will be compared to phase velocities and wavelengths determined from combining an array of GPS receivers; discrepancies due to the altitude sensitivity of the techniques or other effects will be discussed. These results demonstrate that AM radio signals can be used for detection of nighttime TIDs.

Variations in Rotation Rate and Polar Motion of a Non-hydrostatic Titan

NASA Astrophysics Data System (ADS)

Van Hoolst, T.; Coyette, A.; Baland, R. M.

2017-12-01

Observations of the rotation of large synchronously rotating satellites such as Titan can help to probe their interior. Previous studies (Van Hoolst et al. 2013, Richard et al. 2014, Coyette et al. 2016) mostly assume that Titan is in hydrostatic equilibrium, although several measurements indicate that it deviates from such a state. Here we investigate the effect of non-hydrostatic equilibrium and of flow in the subsurface ocean on the rotation of Titan. We consider (1) the periodic changes in Titan's rotation rate with a period equal to Titan's orbital period (diurnal librations) as a result of the gravitational torque exerted by Saturn, (2) the periodic changes in Titan's rotation rate with a main period equal to half the orbital period of Saturn (seasonal librations) and due to the dynamic variations in the atmosphere of Titan and (3) the periodic changes of the axis of rotation with respect to the figure axis of Titan (polar motion) with a main period equal to the orbital period of Saturn and due to the dynamic variations in the atmosphere of Titan. The non-hydrostatic mass distribution significantly influences the amplitude of the diurnal and seasonal librations. It is less important for polar motion, which is sensitive to flow in the subsurface ocean. The smaller than synchronous rotation rate measured by Cassini (Meriggiola 2016) can be explained by the atmospheric forcing.

Processes of 30-90 days sea surface temperature variability in the northern Indian Ocean during boreal summer

NASA Astrophysics Data System (ADS)

Vialard, J.; Jayakumar, A.; Gnanaseelan, C.; Lengaigne, M.; Sengupta, D.; Goswami, B. N.

2012-05-01

During summer, the northern Indian Ocean exhibits significant atmospheric intraseasonal variability associated with active and break phases of the monsoon in the 30-90 days band. In this paper, we investigate mechanisms of the Sea Surface Temperature (SST) signature of this atmospheric variability, using a combination of observational datasets and Ocean General Circulation Model sensitivity experiments. In addition to the previously-reported intraseasonal SST signature in the Bay of Bengal, observations show clear SST signals in the Arabian Sea related to the active/break cycle of the monsoon. As the atmospheric intraseasonal oscillation moves northward, SST variations appear first at the southern tip of India (day 0), then in the Somali upwelling region (day 10), northern Bay of Bengal (day 19) and finally in the Oman upwelling region (day 23). The Bay of Bengal and Oman signals are most clearly associated with the monsoon active/break index, whereas the relationship with signals near Somali upwelling and the southern tip of India is weaker. In agreement with previous studies, we find that heat flux variations drive most of the intraseasonal SST variability in the Bay of Bengal, both in our model (regression coefficient, 0.9, against ~0.25 for wind stress) and in observations (0.8 regression coefficient); ~60% of the heat flux variation is due do shortwave radiation and ~40% due to latent heat flux. On the other hand, both observations and model results indicate a prominent role of dynamical oceanic processes in the Arabian Sea. Wind-stress variations force about 70-100% of SST intraseasonal variations in the Arabian Sea, through modulation of oceanic processes (entrainment, mixing, Ekman pumping, lateral advection). Our ~100 km resolution model suggests that internal oceanic variability (i.e. eddies) contributes substantially to intraseasonal variability at small-scale in the Somali upwelling region, but does not contribute to large-scale intraseasonal SST variability due to its small spatial scale and random phase relation to the active-break monsoon cycle. The effect of oceanic eddies; however, remains to be explored at a higher spatial resolution.

FPI observations of nighttime mesospheric and thermospheric winds in China and their comparisons with HWM07

NASA Astrophysics Data System (ADS)

Yuan, Wei

2015-04-01

We analyzed the nighttime horizontal neutral winds in the middle atmosphere (˜87 and ˜98 km) and thermosphere (˜250 km) derived from a Fabry-Perot interferometer (FPI), which was installed at Xinglong station (40.2◦ N, 117.4◦ E) in central China. The wind data covered the period from April 2010 to July 2012. We studied the annual, semiannual and terannual variations of the midnight winds at ˜87 km, ˜98 km and ˜250 km for the first time and compared them with Horizontal Wind Model 2007 (HWM07). Our results show the following: (1) at ˜ 87 km, both the observed and model zonal winds have similar phases in the annual and semiannual variations. However, the HWM07 amplitudes are much larger. (2) At ˜98 km, the model shows strong eastward wind in the summer solstice, resulting in a large annual variation, while the observed strongest component is semiannual. The observation and model midnight meridional winds agree well. Both are equatorward throughout the year and have small amplitudes in the annual and semiannual variations. (3) There are large discrepancies between the observed and HWM07 winds at ˜250 km. This discrepancy is largely due to the strong semiannual zonal wind in the model and the phase difference in the annual variation of the meridional wind. The FPI annual variation coincides with the results from Arecibo, which has similar geomagnetic latitude as Xinglong station. In General, the consistency of FPI winds with model winds is better at ˜87 and ˜98 km than that at ˜250 km. We also studied the seasonally and monthly averaged nighttime winds. The most salient features include the following: (1) the seasonally averaged zonal winds at ˜87 and ˜98 km typically have small variations throughout the night. (2) The model zonal and meridional nighttime wind variations are typically much larger than those of observations at ˜87 km and ˜98 km. (3) At ˜250 km, model zonal wind compares well with the observation in the winter. For spring and autumn, the model wind is more eastward before ˜ 03:00 LT but more westward after. The observed nighttime zonal and meridional winds on average are close to zero in the summer and autumn, which indicates a lack of strong stable tides. The consistency of FPI zonal wind with model wind at ˜250 km is better than the meridional wind.

Hazard assessment of long-period ground motions for the Nankai Trough earthquakes

NASA Astrophysics Data System (ADS)

Maeda, T.; Morikawa, N.; Aoi, S.; Fujiwara, H.

2013-12-01

We evaluate a seismic hazard for long-period ground motions associated with the Nankai Trough earthquakes (M8~9) in southwest Japan. Large interplate earthquakes occurring around the Nankai Trough have caused serious damages due to strong ground motions and tsunami; most recent events were in 1944 and 1946. Such large interplate earthquake potentially causes damages to high-rise and large-scale structures due to long-period ground motions (e.g., 1985 Michoacan earthquake in Mexico, 2003 Tokachi-oki earthquake in Japan). The long-period ground motions are amplified particularly on basins. Because major cities along the Nankai Trough have developed on alluvial plains, it is therefore important to evaluate long-period ground motions as well as strong motions and tsunami for the anticipated Nankai Trough earthquakes. The long-period ground motions are evaluated by the finite difference method (FDM) using 'characterized source models' and the 3-D underground structure model. The 'characterized source model' refers to a source model including the source parameters necessary for reproducing the strong ground motions. The parameters are determined based on a 'recipe' for predicting strong ground motion (Earthquake Research Committee (ERC), 2009). We construct various source models (~100 scenarios) giving the various case of source parameters such as source region, asperity configuration, and hypocenter location. Each source region is determined by 'the long-term evaluation of earthquakes in the Nankai Trough' published by ERC. The asperity configuration and hypocenter location control the rupture directivity effects. These parameters are important because our preliminary simulations are strongly affected by the rupture directivity. We apply the system called GMS (Ground Motion Simulator) for simulating the seismic wave propagation based on 3-D FDM scheme using discontinuous grids (Aoi and Fujiwara, 1999) to our study. The grid spacing for the shallow region is 200 m and 100 m in horizontal and vertical, respectively. The grid spacing for the deep region is three times coarser. The total number of grid points is about three billion. The 3-D underground structure model used in the FD simulation is the Japan integrated velocity structure model (ERC, 2012). Our simulation is valid for period more than two seconds due to the lowest S-wave velocity and grid spacing. However, because the characterized source model may not sufficiently support short period components, we should be interpreted the reliable period of this simulation with caution. Therefore, we consider the period more than five seconds instead of two seconds for further analysis. We evaluate the long-period ground motions using the velocity response spectra for the period range between five and 20 second. The preliminary simulation shows a large variation of response spectra at a site. This large variation implies that the ground motion is very sensitive to different scenarios. And it requires studying the large variation to understand the seismic hazard. Our further study will obtain the hazard curves for the Nankai Trough earthquake (M 8~9) by applying the probabilistic seismic hazard analysis to the simulation results.

Computing 3-D wavefields in mantle circulations models to test hypotheses on the origin of lower mantle heterogeneity under Africa directly against seismic observations

NASA Astrophysics Data System (ADS)

Schuberth, Bernhard; Zaroli, Christophe; Nolet, Guust

2015-04-01

Of particular interest for the tectonic evolution of the Atlantic region is the influence of lower mantle structure under Africa on flow in the upper mantle beneath the ocean basin. Along with its Pacific counterpart, the large African anomaly in the lowermost mantle with strongly reduced seismic velocities has received considerable attention in seismological and geodynamic studies. Several seismological observations are typically taken as an indication that these two anomalies are being caused by large-scale compositional variations and that they are piles of material with higher density than normal mantle rock. This would imply negative buoyancy in the lowermost mantle under Africa, which has important implications for the flow at shallower depth and inferences on the processes that led to the formation of the Atlantic Ocean basin. However, a large number of recent studies argue for a strong thermal gradient across the core-mantle boundary that might provide an alternative explanation for the lower mantle anomaly through the resulting large lateral temperature variations. Recently, we developed a new joint forward modeling approach to test such geodynamic hypotheses directly against the seismic observations: Seismic heterogeneity is predicted by converting the temperature field of a high-resolution 3-D mantle circulation model into seismic velocities using thermodynamic models of mantle mineralogy. 3-D global wave propagation in the synthetic elastic structures is then simulated using a spectral element method. Being based on forward modelling only, this approach allows us to generate synthetic wavefields and seismograms independently of seismic observations. The statistics of observed long-period body wave traveltime variations show a markedly different behaviour for P- and S-waves: the standard deviation of P-wave delay times stays almost constant with ray turning depth, while that of the S-wave delay times increases strongly throughout the mantle. In an earlier study, we showed that synthetic traveltime variations computed for an isochemical mantle circulation model with strong core heating can reproduce these different trends. This was taken as a strong indication that seismic heterogeneity in the lower mantle is likely dominated by thermal variations on large length-scales (i.e., relevant for long-period body waves). We will discuss the robustness of this earlier conclusion by exploring the uncertainties in the mineralogical models used to convert temperatures to seismic velocities. In particular, we investigate the influence of anelasticity on the standard deviation of our synthetic traveltime variations. Owing to the differences in seismic frequency content between laboratory measurements (MHz to GHz) and the Earth (mHz to Hz), the seismic velocities given in the mineralogical model need to be adjusted; that is, corrected for dispersion due to anelastic effects.

Feasibility analysis of large length-scale thermocapillary flow experiment for the International Space Station

NASA Astrophysics Data System (ADS)

Alberts, Samantha J.

The investigation of microgravity fluid dynamics emerged out of necessity with the advent of space exploration. In particular, capillary research took a leap forward in the 1960s with regards to liquid settling and interfacial dynamics. Due to inherent temperature variations in large spacecraft liquid systems, such as fuel tanks, forces develop on gas-liquid interfaces which induce thermocapillary flows. To date, thermocapillary flows have been studied in small, idealized research geometries usually under terrestrial conditions. The 1 to 3m lengths in current and future large tanks and hardware are designed based on hardware rather than research, which leaves spaceflight systems designers without the technological tools to effectively create safe and efficient designs. This thesis focused on the design and feasibility of a large length-scale thermocapillary flow experiment, which utilizes temperature variations to drive a flow. The design of a helical channel geometry ranging from 1 to 2.5m in length permits a large length-scale thermocapillary flow experiment to fit in a seemingly small International Space Station (ISS) facility such as the Fluids Integrated Rack (FIR). An initial investigation determined the proposed experiment produced measurable data while adhering to the FIR facility limitations. The computational portion of this thesis focused on the investigation of functional geometries of fuel tanks and depots using Surface Evolver. This work outlines the design of a large length-scale thermocapillary flow experiment for the ISS FIR. The results from this work improve the understanding thermocapillary flows and thus improve technological tools for predicting heat and mass transfer in large length-scale thermocapillary flows. Without the tools to understand the thermocapillary flows in these systems, engineers are forced to design larger, heavier vehicles to assure safety and mission success.

Image reconstruction in higher dimensions: myocardial perfusion imaging of tracer dynamics with cardiac motion due to deformation and respiration

NASA Astrophysics Data System (ADS)

Shrestha, Uttam M.; Seo, Youngho; Botvinick, Elias H.; Gullberg, Grant T.

2015-11-01

Myocardial perfusion imaging (MPI) using slow rotating large field of view cameras requires spatiotemporal reconstruction of dynamically acquired data to capture the time variation of the radiotracer concentration. In vivo, MPI contains additional degrees of freedom involving unavoidable motion of the heart due to quasiperiodic beating and the effects of respiration, which can severely degrade the quality of the images. This work develops a technique for a single photon emission computed tomography (SPECT) that reconstructs the distribution of the radiotracer concentration in the myocardium using a tensor product of different sets of basis functions that approximately describe the spatiotemporal variation of the radiotracer concentration and the motion of the heart. In this study the temporal B-spline basis functions are chosen to reflect the dynamics of the radiotracer, while the intrinsic deformation and the extrinsic motion of the heart are described by a product of a discrete set of Gaussian basis functions. Reconstruction results are presented showing the dynamics of the tracer in the myocardium as it deforms due to cardiac beating, and is displaced due to respiratory motion. These results are compared with the conventional 4D-spatiotemporal reconstruction method that models only the temporal changes of the tracer activity. The higher dimensional reconstruction method proposed here improves bias, yet the signal-to-noise ratio (SNR) decreases slightly due to redistribution of the counts over the cardiac-respiratory gates. Additionally, there is a trade-off between the number of gates and the number of projections per gate to achieve high contrast images.

Image reconstruction in higher dimensions: myocardial perfusion imaging of tracer dynamics with cardiac motion due to deformation and respiration.

PubMed

Shrestha, Uttam M; Seo, Youngho; Botvinick, Elias H; Gullberg, Grant T

2015-11-07

Myocardial perfusion imaging (MPI) using slow rotating large field of view cameras requires spatiotemporal reconstruction of dynamically acquired data to capture the time variation of the radiotracer concentration. In vivo, MPI contains additional degrees of freedom involving unavoidable motion of the heart due to quasiperiodic beating and the effects of respiration, which can severely degrade the quality of the images. This work develops a technique for a single photon emission computed tomography (SPECT) that reconstructs the distribution of the radiotracer concentration in the myocardium using a tensor product of different sets of basis functions that approximately describe the spatiotemporal variation of the radiotracer concentration and the motion of the heart. In this study the temporal B-spline basis functions are chosen to reflect the dynamics of the radiotracer, while the intrinsic deformation and the extrinsic motion of the heart are described by a product of a discrete set of Gaussian basis functions. Reconstruction results are presented showing the dynamics of the tracer in the myocardium as it deforms due to cardiac beating, and is displaced due to respiratory motion. These results are compared with the conventional 4D-spatiotemporal reconstruction method that models only the temporal changes of the tracer activity. The higher dimensional reconstruction method proposed here improves bias, yet the signal-to-noise ratio (SNR) decreases slightly due to redistribution of the counts over the cardiac-respiratory gates. Additionally, there is a trade-off between the number of gates and the number of projections per gate to achieve high contrast images.

Plasma creatinine in dogs: intra- and inter-laboratory variation in 10 European veterinary laboratories

PubMed Central

2011-01-01

Background There is substantial variation in reported reference intervals for canine plasma creatinine among veterinary laboratories, thereby influencing the clinical assessment of analytical results. The aims of the study was to determine the inter- and intra-laboratory variation in plasma creatinine among 10 veterinary laboratories, and to compare results from each laboratory with the upper limit of its reference interval. Methods Samples were collected from 10 healthy dogs, 10 dogs with expected intermediate plasma creatinine concentrations, and 10 dogs with azotemia. Overlap was observed for the first two groups. The 30 samples were divided into 3 batches and shipped in random order by postal delivery for plasma creatinine determination. Statistical testing was performed in accordance with ISO standard methodology. Results Inter- and intra-laboratory variation was clinically acceptable as plasma creatinine values for most samples were usually of the same magnitude. A few extreme outliers caused three laboratories to fail statistical testing for consistency. Laboratory sample means above or below the overall sample mean, did not unequivocally reflect high or low reference intervals in that laboratory. Conclusions In spite of close analytical results, further standardization among laboratories is warranted. The discrepant reference intervals seem to largely reflect different populations used in establishing the reference intervals, rather than analytical variation due to different laboratory methods. PMID:21477356

Role of Vpma phase variation in Mycoplasma agalactiae pathogenesis

PubMed Central

Chopra-Dewasthaly, Rohini; Baumgartner, Martina; Gamper, Erika; Innerebner, Carmen; Zimmermann, Martina; Schilcher, Franz; Tichy, Alexander; Winter, Petra; Rosengarten, Renate; Spergser, Joachim

2015-01-01

Compared with other bacterial pathogens, the molecular mechanisms of mycoplasma pathogenicity are largely unknown. Several studies in the past have shown that pathogenic mycoplasmas are equipped with sophisticated genetic systems that allow them to undergo high-frequency surface antigenic variations. Although never clearly proven, these variable mycoplasma surface components are often implicated in host immune evasion and adaptation. Vpma surface lipoproteins of the ruminant pathogen Mycoplasma agalactiae are encoded on a genomic pathogenicity island–like locus and are considered as one of the well-characterized model systems of mycoplasma surface antigenic variation. The present study assesses the role of these phase-variable Vpmas in the molecular pathogenesis of M. agalactiae by testing the wild-type strain PG2 in comparison with the xer1-disrupted Vpma ‘phase-locked’ mutants in sheep infection models. The data clearly illustrate that although Xer1 recombinase is not a virulence factor of M. agalactiae and Vpma phase variation is not necessary for establishing an infection, it might critically influence the survival and persistence of the pathogen under natural field conditions, mainly due to a better capacity for dissemination and evoking systemic responses. This is the first study where mycoplasma ‘phase-locked’ mutants are tested in vivo to elucidate the role of phase variation during infection. PMID:22809092

Variations in Global Precipitation: Climate-scale to Floods

NASA Technical Reports Server (NTRS)

Adler, Robert

2006-01-01

Variations in global precipitation from climate-scale to small scale are examined using satellite-based analyses of the Global Precipitation Climatology Project (GPCP) and information from the Tropical Rainfall Measuring Mission (TRMM). Global and large regional rainfall variations and possible long-term changes are examined using the 27- year (1979-2005) monthly dataset from the GPCP. In addition to global patterns associated with phenomena such as ENSO, the data set is explored for evidence of longterm change. Although the global change of precipitation in the data set is near zero, the data set does indicate a small upward trend in the Tropics (25S-25N), especially over ocean. Techniques are derived to isolate and eliminate variations due to ENS0 and major volcanic eruptions and the significance of the trend is examined. The status of TRMM estimates is examined in terms of evaluating and improving the long-term global data set. To look at rainfall variations on a much smaller scale TRMM data is used in combination with observations from other satellites to produce a 3-hr resolution, eight-year data set for examination of weather events and for practical applications such as detecting floods. Characteristics of the data set are presented and examples of recent flood events are examined.

Interannual Variation of Surface Circulation in the Japan/East Sea due to External Forcings and Intrinsic Variability

NASA Astrophysics Data System (ADS)

Choi, Byoung-Ju; Cho, Seong Hun; Jung, Hee Seok; Lee, Sang-Ho; Byun, Do-Seong; Kwon, Kyungman

2018-03-01

The interannual variation of surface ocean currents can be as large as seasonal variation in the Japan/East Sea (JES). To identify the major factors that cause such interannual variability of surface ocean circulation in the JES, surface circulation was simulated from 1998 to 2009 using a three-dimensional model. Contributions of atmospheric forcing (ATM), open boundary data (OBC), and intrinsic variability (ITV) of the surface flow in the JES on the interannual variability of surface ocean circulation were separately examined using numerical simulations. Variability in surface circulation was quantified in terms of variance in sea surface height, 100-m depth water temperature, and surface currents. ITV was found to be the dominant factor that induced interannual variabilities of surface circulation, the main path of the East Korea Warm Current (EKWC), and surface kinetic energy on a time scale of 2-4 years. OBC and ATM were secondary factors contributing to the interannual variation of surface circulation. Interannual variation of ATM changed the separation latitude of EKWC and increased the variability of surface circulation in the Ulleung Basin. Interannual variation of OBC enhanced low-frequency changes in surface circulation and eddies in the Yamato Basin. It also modulated basin-wide uniform oscillations of sea level. This study suggests that precise estimation of initial conditions using data assimilation is essential for long-term prediction of surface circulation in the JES.

Temporal and spatial variations of soil carbon dioxide, methane, and nitrous oxide fluxes in a Southeast Asian tropical rainforest

NASA Astrophysics Data System (ADS)

Itoh, M.; Kosugi, Y.; Takanashi, S.; Hayashi, Y.; Kanemitsu, S.; Osaka, K.; Tani, M.; Nik, A. R.

2010-09-01

To clarify the factors controlling temporal and spatial variations of soil carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) fluxes, we investigated these gas fluxes and environmental factors in a tropical rainforest in Peninsular Malaysia. Temporal variation of CO2 flux in a 2-ha plot was positively related to soil water condition and rainfall history. Spatially, CO2 flux was negatively related to soil water condition. When CO2 flux hotspots were included, no other environmental factors such as soil C or N concentrations showed any significant correlation. Although the larger area sampled in the present study complicates explanations of spatial variation of CO2 flux, our results support a previously reported bipolar relationship between the temporal and spatial patterns of CO2 flux and soil water condition observed at the study site in a smaller study plot. Flux of CH4 was usually negative with little variation, resulting in the soil at our study site functioning as a CH4 sink. Both temporal and spatial variations of CH4 flux were positively related to the soil water condition. Soil N concentration was also related to the spatial distribution of CH4 flux. Some hotspots were observed, probably due to CH4 production by termites, and these hotspots obscured the relationship between both temporal and spatial variations of CH4 flux and environmental factors. Temporal variation of N2O flux and soil N2O concentration was large and significantly related to the soil water condition, or in a strict sense, to rainfall history. Thus, the rainfall pattern controlled wet season N2O production in soil and its soil surface flux. Spatially, large N2O emissions were detected in wet periods at wetter and anaerobic locations, and were thus determined by soil physical properties. Our results showed that, even in Southeast Asian rainforests where distinct dry and wet seasons do not exist, variation in the soil water condition related to rainfall history controlled the temporal variations of soil CO2 flux, CH4 uptake, and N2O emission. The soil water condition associated with soil hydraulic properties was also the important controlling factor of the spatial distributions of these gas fluxes.

The distribution of nuclear genetic variation and historical demography of sea otters

USGS Publications Warehouse

Aguilar, A.; Jessup, David A.; Estes, J.; Garza, J.C.

2008-01-01

The amount and distribution of population genetic variation is crucial information for the design of effective conservation strategies for endangered species and can also be used to provide inference about demographic processes and patterns of migration. Here, we describe variation at a large number of nuclear genes in sea otters Enhydra lutris ssp. We surveyed 14 variable microsatellite loci and two genes of the major histocompatibility complex (MHC) in up to 350 California sea otters Enhydra lutris nereis, which represents ∼10% of the subspecies' population, and 46 otters from two Alaskan sites. We utilized methods for detecting past reductions in effective population size to examine the effects of near extinction from the fur trade. Summary statistic tests largely failed to find a signal of a recent population size reduction (within the past 200 years), but a Bayesian method found a signal of a strong reduction over a longer time scale (up to 500 years ago). These results indicate that the reduction in size began long enough ago that much genetic variation was lost before the 19th century fur trade. A comparison of geographic distance and pairwise relatedness for individual otters found no evidence of kin-based spatial clustering for either gender. This indicates that there is no population structure, due to extended family groups, within the California population. A survey of population genetic variation found that two of the MHC genes, DQB and DRB, had two alleles present and one of the genes, DRA, was monomorphic in otters. This contrasts with other mammals, where they are often the most variable coding genes known. Genetic variation in the sea otter is among the lowest observed for a mammal and raises concerns about the long-term viability of the species, particularly in the face of future environmental changes.

Variation of normal tissue complication probability (NTCP) estimates of radiation-induced hypothyroidism in relation to changes in delineation of the thyroid gland.

PubMed

Rønjom, Marianne F; Brink, Carsten; Lorenzen, Ebbe L; Hegedüs, Laszlo; Johansen, Jørgen

2015-01-01

To examine the variations of risk-estimates of radiation-induced hypothyroidism (HT) from our previously developed normal tissue complication probability (NTCP) model in patients with head and neck squamous cell carcinoma (HNSCC) in relation to variability of delineation of the thyroid gland. In a previous study for development of an NTCP model for HT, the thyroid gland was delineated in 246 treatment plans of patients with HNSCC. Fifty of these plans were randomly chosen for re-delineation for a study of the intra- and inter-observer variability of thyroid volume, Dmean and estimated risk of HT. Bland-Altman plots were used for assessment of the systematic (mean) and random [standard deviation (SD)] variability of the three parameters, and a method for displaying the spatial variation in delineation differences was developed. Intra-observer variability resulted in a mean difference in thyroid volume and Dmean of 0.4 cm(3) (SD ± 1.6) and -0.5 Gy (SD ± 1.0), respectively, and 0.3 cm(3) (SD ± 1.8) and 0.0 Gy (SD ± 1.3) for inter-observer variability. The corresponding mean differences of NTCP values for radiation-induced HT due to intra- and inter-observer variations were insignificantly small, -0.4% (SD ± 6.0) and -0.7% (SD ± 4.8), respectively, but as the SDs show, for some patients the difference in estimated NTCP was large. For the entire study population, the variation in predicted risk of radiation-induced HT in head and neck cancer was small and our NTCP model was robust against observer variations in delineation of the thyroid gland. However, for the individual patient, there may be large differences in estimated risk which calls for precise delineation of the thyroid gland to obtain correct dose and NTCP estimates for optimized treatment planning in the individual patient.

Carbon recycling in deltaic sediments: variations at different timescales in the Rhone River delta

NASA Astrophysics Data System (ADS)

Rabouille, C.; Rassmann, J.; Toussaint, F.; Cathalot, C.; Tisnerat-Laborde, N.; Lansard, B.

2016-02-01

Terrestrial aquatic environments and the land-sea connection are a major contributors to the Earth carbon cycle, as these act as a source to the atmosphere of about 1 Gt/yr for rivers and up to 0.4 Gt/yr for estuarine/detaic systems. These estimates are largely uncertain because of the large temporal variability of these systems. In estuarine and deltaic sediments, variability combines hydrological variation from the river (floods and drought) and the hydrology of the coastal seas (storms, current surge, wind induced circulation, upwelling) wich are both influencial on biogeochemistry. This hydrological variability interacts with the seasonal variation of in situ production and with thermal activation of bacterial recycling due to seasonal warming of shallow waters. The combination of these processes gives rise to a range of timescales: typically hours to days for resuspension during storms to interannual variations for particulate discharge modulations. Using in situ oxygen microprofiling devices, we have collected a new dataset on organic matter recycling in the Rhone delta and shelf sediments (Northwestern Mediterranean Sea) which covers a wide range of timescales: from hours to a decade. The hourly variation is collected using a new benthic station deployed on the sediments and specially adapted to monitor short-term variations of sediment oxygen micro-profiles during flood or storms. The seasonal to decadal timescale is constituted by a set of oxygen micro-profiles measured on an array of stations in the Rhône prodelta and shelf by an in situ microprofiler during seasonal cruises over 10 year. The results show that Diffusive Oxygen Fluxes which are related to organic matter recycling vary at all timescales, driven mostly by deposition of river material during floods. Resuspension during storms plays a role over short time scales, and its long-term effect could raise the overall oxygen demand of the sediment by 20-30%.

Temporal variations of radon concentration in the saturated soil of Alpine grassland: the role of groundwater flow.

PubMed

Perrier, Frédéric; Richon, Patrick; Sabroux, Jean-Christophe

2009-03-15

Radon concentration has been monitored from 1995 to 1999 in the soil of the Sur-Frêtes ridge (French Alps), covered with snow from November to April. Measurements were performed at 70 cm depth, with a sampling time of 1 h, at two points: the summit of the ridge, at an altitude of 1792 m, and the bottom of the ridge, at an altitude of 1590 m. On the summit, radon concentration shows a moderate seasonal variation, with a high value from October to April (winter), and a low value from May to September (summer). At the bottom of the ridge, a large and opposite seasonal variation is observed, with a low value in winter and a high value in summer. Fluctuations of the radon concentration seem to be associated with temperature variations, an effect which is largely delusory. Indeed, these variations are actually due to water infiltration. A simplified mixing model is used to show that, at the summit of the ridge, two effects compete in the radon response: a slow infiltration response, rich in radon, with a typical time scale of days, and a fast infiltration of radon-poor rainwater. At the bottom of the ridge, similarly, two groundwater contributions compete: one slow infiltration response, similar to the response seen at the summit, and an additional slower response, with a typical time scale of about a month. This second slower response can be interpreted as the aquifer discharge in response to snow melt. This study shows that, while caution is necessary to properly interpret the various effects, the temporal variations of the radon concentration in soil can be understood reasonably well, and appear to be a sensitive tool to study the subtle interplay of near surface transfer processes of groundwater with different transit times.

Effects of Vehicle Weight and True Versus Indicated Airspeed on BVI Noise During Steady Descending Flight

NASA Technical Reports Server (NTRS)

Stephenson, James H.; Greenwood, Eric

2015-01-01

Blade-vortex interaction noise measurements are analyzed for an AS350B helicopter operated at 7000 ft elevation above sea level. Blade-vortex interaction (BVI) noise from four, 6 degree descent conditions are investigated with descents flown at 80 knot true and indicated airspeed, as well as 4400 and 3915 pound take-off weights. BVI noise is extracted from the acquired acoustic signals by way of a previously developed time-frequency analysis technique. The BVI extraction technique is shown to provide a better localization of BVI noise, compared to the standard Fourier transform integration method. Using this technique, it was discovered that large changes in BVI noise amplitude occurred due to changes in vehicle gross weight. Changes in BVI noise amplitude were too large to be due solely to changes in the vortex strength caused by varying vehicle weight. Instead, it is suggested that vehicle weight modifies the tip-path-plane angle of attack, as well as induced inflow, resulting in large variations of BVI noise. It was also shown that defining flight conditions by true airspeed, rather than indicated airspeed, provides more consistent BVI noise signals.

A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks

PubMed Central

Hruz, Tomas; Lucas, Christoph; Laule, Oliver; Zimmermann, Philip

2013-01-01

Visualization of large complex networks has become an indispensable part of systems biology, where organisms need to be considered as one complex system. The visualization of the corresponding network is challenging due to the size and density of edges. In many cases, the use of standard visualization algorithms can lead to high running times and poorly readable visualizations due to many edge crossings. We suggest an approach that analyzes the structure of the graph first and then generates a new graph which contains specific semantic symbols for regular substructures like dense clusters. We propose a multilevel gamma-clustering layout visualization algorithm (MLGA) which proceeds in three subsequent steps: (i) a multilevel γ-clustering is used to identify the structure of the underlying network, (ii) the network is transformed to a tree, and (iii) finally, the resulting tree which shows the network structure is drawn using a variation of a force-directed algorithm. The algorithm has a potential to visualize very large networks because it uses modern clustering heuristics which are optimized for large graphs. Moreover, most of the edges are removed from the visual representation which allows keeping the overview over complex graphs with dense subgraphs. PMID:23864855

Phenotype-loci associations in networks of patients with rare disorders: application to assist in the diagnosis of novel clinical cases.

PubMed

Bueno, Anibal; Rodríguez-López, Rocío; Reyes-Palomares, Armando; Rojano, Elena; Corpas, Manuel; Nevado, Julián; Lapunzina, Pablo; Sánchez-Jiménez, Francisca; Ranea, Juan A G

2018-06-26

Copy number variations (CNVs) are genomic structural variations (deletions, duplications, or translocations) that represent the 4.8-9.5% of human genome variation in healthy individuals. In some cases, CNVs can also lead to disease, being the etiology of many known rare genetic/genomic disorders. Despite the last advances in genomic sequencing and diagnosis, the pathological effects of many rare genetic variations remain unresolved, largely due to the low number of patients available for these cases, making it difficult to identify consistent patterns of genotype-phenotype relationships. We aimed to improve the identification of statistically consistent genotype-phenotype relationships by integrating all the genetic and clinical data of thousands of patients with rare genomic disorders (obtained from the DECIPHER database) into a phenotype-patient-genotype tripartite network. Then we assessed how our network approach could help in the characterization and diagnosis of novel cases in clinical genetics. The systematic approach implemented in this work is able to better define the relationships between phenotypes and specific loci, by exploiting large-scale association networks of phenotypes and genotypes in thousands of rare disease patients. The application of the described methodology facilitated the diagnosis of novel clinical cases, ranking phenotypes by locus specificity and reporting putative new clinical features that may suggest additional clinical follow-ups. In this work, the proof of concept developed over a set of novel clinical cases demonstrates that this network-based methodology might help improve the precision of patient clinical records and the characterization of rare syndromes.

gsSKAT: Rapid gene set analysis and multiple testing correction for rare-variant association studies using weighted linear kernels.

PubMed

Larson, Nicholas B; McDonnell, Shannon; Cannon Albright, Lisa; Teerlink, Craig; Stanford, Janet; Ostrander, Elaine A; Isaacs, William B; Xu, Jianfeng; Cooney, Kathleen A; Lange, Ethan; Schleutker, Johanna; Carpten, John D; Powell, Isaac; Bailey-Wilson, Joan E; Cussenot, Olivier; Cancel-Tassin, Geraldine; Giles, Graham G; MacInnis, Robert J; Maier, Christiane; Whittemore, Alice S; Hsieh, Chih-Lin; Wiklund, Fredrik; Catalona, William J; Foulkes, William; Mandal, Diptasri; Eeles, Rosalind; Kote-Jarai, Zsofia; Ackerman, Michael J; Olson, Timothy M; Klein, Christopher J; Thibodeau, Stephen N; Schaid, Daniel J

2017-05-01

Next-generation sequencing technologies have afforded unprecedented characterization of low-frequency and rare genetic variation. Due to low power for single-variant testing, aggregative methods are commonly used to combine observed rare variation within a single gene. Causal variation may also aggregate across multiple genes within relevant biomolecular pathways. Kernel-machine regression and adaptive testing methods for aggregative rare-variant association testing have been demonstrated to be powerful approaches for pathway-level analysis, although these methods tend to be computationally intensive at high-variant dimensionality and require access to complete data. An additional analytical issue in scans of large pathway definition sets is multiple testing correction. Gene set definitions may exhibit substantial genic overlap, and the impact of the resultant correlation in test statistics on Type I error rate control for large agnostic gene set scans has not been fully explored. Herein, we first outline a statistical strategy for aggregative rare-variant analysis using component gene-level linear kernel score test summary statistics as well as derive simple estimators of the effective number of tests for family-wise error rate control. We then conduct extensive simulation studies to characterize the behavior of our approach relative to direct application of kernel and adaptive methods under a variety of conditions. We also apply our method to two case-control studies, respectively, evaluating rare variation in hereditary prostate cancer and schizophrenia. Finally, we provide open-source R code for public use to facilitate easy application of our methods to existing rare-variant analysis results. © 2017 WILEY PERIODICALS, INC.

Multiple ionospheric perturbations during the Saint Patrick's Day storm 2015 in the European-African sector

NASA Astrophysics Data System (ADS)

Borries, Claudia; Mahrous, Ayman M.; Ellahouny, Nada M.; Badeke, Ronny

2016-11-01

Strong ionospheric perturbations were generated by the intense geomagnetic storm on 17 March 2015. In this article, we are studying perturbations in the European-African sector observed in the total electron content (TEC). Focal points are wavelike phenomena considered as large-scale traveling ionospheric disturbances (LSTIDs). In the European-African sector, the storm produced three different types of LSTIDs: (1) a concurrent TEC perturbation at all latitudes simultaneously; (2) one LSTID propagating toward the equator, having very large wave parameters (wavelength: ≈3600 km, period: ≈120 min, and speed: ≈500 m/s); and (3) several LSTIDs propagating toward the equator with typical wave parameters (wavelength: ≈2100 km, period: ≈60 min, and speed ≈600 m/s). The third type of LSTIDs is considered to be exited as most LSTIDs either due to variations in the Joule heating or variations in the Lorentz force, whereas the first two perturbation types are rather unusual in their appearance. They occurred during the partial recovery phase when the geomagnetic perturbations were minor and the interplanetary magnetic field turned northward. A westward prompt penetration electric field is considered to excite the first perturbation signature, which indicates a sudden TEC depletion. For the second LSTID type, variations in the Lorentz force because of perturbed electric fields and a minor particle precipitation effect are extracted as possible excitation mechanisms.

Lead in rice: analysis of baseline lead levels in market and field collected rice grains.

PubMed

Norton, Gareth J; Williams, Paul N; Adomako, Eureka E; Price, Adam H; Zhu, Yongguan; Zhao, Fang-Jie; McGrath, Steve; Deacon, Claire M; Villada, Antia; Sommella, Alessia; Lu, Ying; Ming, Lei; De Silva, P Mangala C S; Brammer, Hugh; Dasgupta, Tapash; Islam, M Rafiqul; Meharg, Andrew A

2014-07-01

In a large scale survey of rice grains from markets (13 countries) and fields (6 countries), a total of 1578 rice grain samples were analysed for lead. From the market collected samples, only 0.6% of the samples exceeded the Chinese and EU limit of 0.2 μg g(-1) lead in rice (when excluding samples collected from known contaminated/mine impacted regions). When evaluating the rice grain samples against the Food and Drug Administration's (FDA) provisional total tolerable intake (PTTI) values for children and pregnant women, it was found that only people consuming large quantities of rice were at risk of exceeding the PTTI from rice alone. Furthermore, 6 field experiments were conducted to evaluate the proportion of the variation in lead concentration in rice grains due to genetics. A total of 4 of the 6 field experiments had significant differences between genotypes, but when the genotypes common across all six field sites were assessed, only 4% of the variation was explained by genotype, with 9.5% and 11% of the variation explained by the environment and genotype by environment interaction respectively. Further work is needed to identify the sources of lead contamination in rice, with detailed information obtained on the locations and environments where the rice is sampled, so that specific risk assessments can be performed. Copyright © 2014 Elsevier B.V. All rights reserved.

Sedimentological Control on Hydrate Saturation Distribution in Arctic Gas-Hydrate-Bearing Deposits

NASA Astrophysics Data System (ADS)

Behseresht, J.; Peng, Y.; Bryant, S. L.

2010-12-01

Grain size variations along with the relative rates of fluid phases migrating into the zone of hydrate stability, plays an important role in gas-hydrate distribution and its morphologic characteristics. In the Arctic, strata several meters thick containing large saturations of gas hydrate are often separated by layers containing small but nonzero hydrate saturations. Examples are Mt. Elbert, Alaska and Mallik, NW Territories. We argue that this sandwich type hydrate saturation distribution is consistent with having a gas phase saturation within the sediment when the base of gas hydrate stability zone (BGHSZ) was located above the sediment package. The volume change during hydrate formation process derives movement of fluid phases into the GHSZ. We show that this fluid movement -which is mainly governed by characteristic relative permeability curves of the host sediment-, plays a crucial role in the amount of hydrate saturation in the zone of major hydrate saturation. We develop a mechanistic model that enables estimating the final hydrate saturation from an initial gas/water saturation in sediment with known relative permeability curves. The initial gas/water saturation is predicted using variation of capillary entry pressure with depth, which in turn depends on the variation in grain-size distribution. This model provides a mechanistic approach for explaining large hydrate saturations (60%-75%) observed in zones of major hydrate saturation considering the governing characteristic relative permeability curves of the host sediments. We applied the model on data from Mount Elbert well on the Alaskan North Slope. It is shown that, assuming a cocurrent flow of gas and water into the GHSZ, such large hydrate saturations (up to 75%) cannot result from large initial gas saturations (close to 1-Sw,irr) due to limitations on water flux imposed by typical relative permeability curves. They could however result from modest initial gas saturations (ca. 40%) at which we have reasonable phase mobility ratios required for appropriate relative rates of gas and water transporting into GHSZ to form large hydrate saturations. Nevertheless, from the profile of capillary entry pressure vs. depth, we expect large initial gas saturations and thus the final high hydrate saturation suggests another form of water flow: water moves down through accumulated hydrate from the unfrozen water above. For this to happen the water phase must remain connected within the hydrate-bearing sediment. This seems plausible in hydrate bearing sediments because hydrate formation will be stopped before water saturation gets to very low values (lower than Sw,irr) due to salinity build up. The location of small hydrate saturations (10-15%) is consistent with the location of the residual gas phase established during water imbibition into these locations while they serve as a gas source to the layers above.

Wide variation and patterns of physicians' responses to drug-drug interaction alerts.

PubMed

Cho, Insook; Lee, Yura; Lee, Jae-Ho; Bates, David W

2018-05-08

Providing physicians with alerts about potentially harmful drug-drug interactions (DDIs) is only moderately effective due to high alert override rates. To understand high override behavior on DDI alerts, we investigated how physicians respond to DDIs and their behavior patterns and variations. Retrospective system log data analysis and records review (sampling 2% of total overrides). A large tertiary academic hospital. About 560 physicians and their override responses to DDI alerts generated from 1 September to 31 December 2014. Not applicable. DDI alert frequency and override rate. We found significant variation in both the number of alerts and override rates at the levels of physicians, departments and drug-class pairs. Physician-level variations were wider for residents than for faculty staff (number of alerts: t = 254.17, P = 0.011; override rates: t = -4.77, P < 0.0001). Using the number of alerts and their override rate, we classified physicians into four groups: inexperienced incautious users, inexperienced cautious users, experienced cautious users and experienced incautious users. Medical department influenced both alert numbers and override rates. Nearly 90% of the overrides involved only five drug-class combinations, which had a wide range of appropriateness in the chart review. The variations at drug-class levels suggest issues with system design and the DDI rules. Department-level variation may be best addressed at the department level, and the rest of the variation appears related to individual physician responses, suggesting the need for interventions at an individual level.

Technology for low cost solid rocket boosters.

NASA Technical Reports Server (NTRS)

Ciepluch, C.

1971-01-01

A review of low cost large solid rocket motors developed at the Lewis Research Center is given. An estimate is made of the total cost reduction obtainable by incorporating this new technology package into the rocket motor design. The propellant, case material, insulation, nozzle ablatives, and thrust vector control are discussed. The effect of the new technology on motor cost is calculated for a typical expandable 260-in. booster application. Included in the cost analysis is the influence of motor performance variations due to specific impulse and weight changes. It is found for this application that motor costs may be reduced by up to 30% and that the economic attractiveness of future large solid rocket motors will be improved when the new technology is implemented.

Flight data analysis and further development of variable-conductance heat pipes. [for aircraft control

NASA Technical Reports Server (NTRS)

Enginer, J. E.; Luedke, E. E.; Wanous, D. J.

1976-01-01

Continuing efforts in large gains in heat-pipe performance are reported. It was found that gas-controlled variable-conductance heat pipes can perform reliably for long periods in space and effectively provide temperature stabilization for spacecraft electronics. A solution was formulated that allows the control gas to vent through arterial heat-pipe walls, thus eliminating the problem of arterial failure under load, due to trace impurities of noncondensable gas trapped in an arterial bubble during priming. This solution functions well in zero gravity. Another solution was found that allows priming at a much lower fluid charge. A heat pipe with high capacity, with close temperature control of the heat source and independent of large variations in sink temperature was fabricated.

Surface-induced brightness temperature variations and their effects on detecting thin cirrus clouds using IR emission channels in the 8-12 microns region

NASA Technical Reports Server (NTRS)

Gao, Bo-Cai; Wiscombe, W. J.

1994-01-01

A method for detecting cirrus clouds in terms of brightness temperature differences between narrowbands at 8, 11, and 12 microns has been proposed by Ackerman et al. In this method, the variation of emissivity with wavelength for different surface targets was not taken into consideration. Based on state-of-the-art laboratory measurements of reflectance spectra of terrestrial materials by Salisbury and D'Aria, it is found that the brightness temperature differences between the 8- and 11-microns bands for soils, rocks, and minerals, and dry vegetation can vary between approximately -8 and +8 K due solely to surface emissivity variations. The large brightness temperature differences are sufficient to cause false detection of cirrus clouds from remote sensing data acquired over certain surface targets using the 8-11-12-microns method directly. It is suggested that the 8-11-12-microns method should be improved to include the surface emissivity effects. In addition, it is recommended that in the future the variation of surface emissivity with wavelength should be taken into account in algorithms for retrieving surface temperatures and low-level atmospheric temperature and water vapor profiles.

Female brain size affects the assessment of male attractiveness during mate choice.

PubMed

Corral-López, Alberto; Bloch, Natasha I; Kotrschal, Alexander; van der Bijl, Wouter; Buechel, Severine D; Mank, Judith E; Kolm, Niclas

2017-03-01

Mate choice decisions are central in sexual selection theory aimed to understand how sexual traits evolve and their role in evolutionary diversification. We test the hypothesis that brain size and cognitive ability are important for accurate assessment of partner quality and that variation in brain size and cognitive ability underlies variation in mate choice. We compared sexual preference in guppy female lines selected for divergence in relative brain size, which we have previously shown to have substantial differences in cognitive ability. In a dichotomous choice test, large-brained and wild-type females showed strong preference for males with color traits that predict attractiveness in this species. In contrast, small-brained females showed no preference for males with these traits. In-depth analysis of optomotor response to color cues and gene expression of key opsins in the eye revealed that the observed differences were not due to differences in visual perception of color, indicating that differences in the ability to process indicators of attractiveness are responsible. We thus provide the first experimental support that individual variation in brain size affects mate choice decisions and conclude that differences in cognitive ability may be an important underlying mechanism behind variation in female mate choice.

Maternal body condition influences magnitude of anti-predator response in offspring.

PubMed

Bennett, Amanda M; Murray, Dennis L

2014-11-07

Organisms exhibit plasticity in response to their environment, but there is large variation even within populations in the expression and magnitude of response. Maternal influence alters offspring survival through size advantages in growth and development. However, the relationship between maternal influence and variation in plasticity in response to predation risk is unknown. We hypothesized that variation in the magnitude of plastic responses between families is at least partly due to maternal provisioning and examined the relationship between maternal condition, egg provisioning and magnitude of plastic response to perceived predation risk (by dragonfly larvae: Aeshna spp.) in northern leopard frogs (Lithobates pipiens). Females in better body condition tended to lay more (clutch size) larger (egg diameter) eggs. Tadpoles responded to predation risk by increasing relative tail depth (morphology) and decreasing activity (behaviour). We found a positive relationship between morphological effect size and maternal condition, but no relationship between behavioural effect size and maternal condition. These novel findings suggest that limitations imposed by maternal condition can constrain phenotypic variation, ultimately influencing the capacity of populations to respond to environmental change. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Nomenclature of Vertebral Laminae in Lizards, with Comments on Ontogenetic and Serial Variation in Lacertini (Squamata, Lacertidae)

PubMed Central

Tschopp, Emanuel

2016-01-01

Vertebral laminae are bony ridges or sheets that connect important morphological landmarks on the vertebrae, like diapophyses or zygapophyses. They usually exhibit some serial variation throughout the column. A consistent terminology facilitates the morphological description of this variation, and the recognition of patterns that could be taxonomically significant and could serve as phylogenetic characters. Such a terminology was designed for saurischian dinosaurs, and has also been applied to other members of Archosauriformes. Herein, this terminology is applied for the first time to lizards (Squamata). Probably due to their generally smaller size compared to saurischian dinosaurs, lizards have less developed vertebral laminae. Some laminae could not be recognized in this group and others require new names to account for differences in basic vertebral morphology. For instance, the fusion of diapophysis and parapophysis in lacertids into a structure called synapophysis necessitates the creation of the new term synapophyseal laminae for both diapophyseal and parapophyseal laminae. An assessment of occurrence and serial variation in a number of lacertid species shows that some laminae develop throughout ontogeny or only occur in large-sized species, whereas the distribution of other laminae might prove to be taxonomically significant in future. PMID:26907769

Nomenclature of Vertebral Laminae in Lizards, with Comments on Ontogenetic and Serial Variation in Lacertini (Squamata, Lacertidae).

PubMed

Tschopp, Emanuel

2016-01-01

Vertebral laminae are bony ridges or sheets that connect important morphological landmarks on the vertebrae, like diapophyses or zygapophyses. They usually exhibit some serial variation throughout the column. A consistent terminology facilitates the morphological description of this variation, and the recognition of patterns that could be taxonomically significant and could serve as phylogenetic characters. Such a terminology was designed for saurischian dinosaurs, and has also been applied to other members of Archosauriformes. Herein, this terminology is applied for the first time to lizards (Squamata). Probably due to their generally smaller size compared to saurischian dinosaurs, lizards have less developed vertebral laminae. Some laminae could not be recognized in this group and others require new names to account for differences in basic vertebral morphology. For instance, the fusion of diapophysis and parapophysis in lacertids into a structure called synapophysis necessitates the creation of the new term synapophyseal laminae for both diapophyseal and parapophyseal laminae. An assessment of occurrence and serial variation in a number of lacertid species shows that some laminae develop throughout ontogeny or only occur in large-sized species, whereas the distribution of other laminae might prove to be taxonomically significant in future.

Nature, nurture and evolution of intra-species variation in mosquito arbovirus transmission competence.

PubMed

Tabachnick, Walter J

2013-01-11

Mosquitoes vary in their competence or ability to transmit arthropod-borne viruses (arboviruses). Many arboviruses cause disease in humans and animals. Identifying the environmental and genetic causes of variation in mosquito competence for arboviruses is one of the great challenges in public health. Progress identifying genetic (nature) and environmental (nurture) factors influencing mosquito competence for arboviruses is reviewed. There is great complexity in the various traits that comprise mosquito competence. The complex interactions between environmental and genetic factors controlling these traits and the factors shaping variation in Nature are largely unknown. The norms of reaction of specific genes influencing competence, their distributions in natural populations and the effects of genetic polymorphism on phenotypic variation need to be determined. Mechanisms influencing competence are not likely due to natural selection because of the direct effects of the arbovirus on mosquito fitness. More likely the traits for mosquito competence for arboviruses are the effects of adaptations for other functions of these competence mechanisms. Determining these other functions is essential to understand the evolution and distributions of competence for arboviruses. This information is needed to assess risk from mosquito-borne disease, predict new mosquito-arbovirus systems, and provide novel strategies to mitigate mosquito-borne arbovirus transmission.

Contrasting patterns of leaf trait variation among and within species during tropical dry forest succession in Costa Rica.

PubMed

Derroire, Géraldine; Powers, Jennifer S; Hulshof, Catherine M; Cárdenas Varela, Luis E; Healey, John R

2018-01-10

A coordinated response to environmental drivers amongst individual functional traits is central to the plant strategy concept. However, whether the trait co-ordination observed at the global scale occurs at other ecological scales (especially within species) remains an open question. Here, for sapling communities of two tropical dry forest types in Costa Rica, we show large differences amongst traits in the relative contribution of species turnover and intraspecific variation to their directional changes in response to environmental changes along a successional gradient. We studied the response of functional traits associated with the leaf economics spectrum and drought tolerance using intensive sampling to analyse inter- and intra-specific responses to environmental changes and ontogeny. Although the overall functional composition of the sapling communities changed during succession more through species turnover than through intraspecific trait variation, their relative contributions differed greatly amongst traits. For instance, community mean specific leaf area changed mostly due to intraspecific variation. Traits of the leaf economics spectrum showed decoupled responses to environmental drivers and ontogeny. These findings emphasise how divergent ecological mechanisms combine to cause great differences in changes of individual functional traits over environmental gradients and ecological scales.

Temporal variations in natural attenuation of chlorinated aliphatic hydrocarbons in eutrophic river sediments impacted by a contaminated groundwater plume.

PubMed

Hamonts, Kelly; Kuhn, Thomas; Vos, Johan; Maesen, Miranda; Kalka, Harald; Smidt, Hauke; Springael, Dirk; Meckenstock, Rainer U; Dejonghe, Winnie

2012-04-15

Chlorinated aliphatic hydrocarbons (CAHs) often discharge into rivers as contaminated groundwater baseflow. Biotransformation, sorption and dilution of CAHs in the impacted river sediments have been reported to reduce discharge, but the effect of temporal variations in environmental conditions on the occurrence and extent of those processes in river sediments is largely unknown. We monitored the reduction of CAH discharge into the Zenne River during a 21-month period. Despite a relatively stable influx of CAHs from the groundwater, the total reduction in CAH discharge from 120 to 20 cm depth in the river sediments, on average 74 ± 21%, showed moderate to large temporal variations, depending on the riverbed location. High organic carbon and anaerobic conditions in the river sediments allowed microbial reductive dechlorination of both chlorinated ethenes and chlorinated ethanes. δ(13)C values of the CAHs showed that this biotransformation was remarkably stable over time, despite fluctuating pore water temperatures. Daughter products of the CAHs, however, were not detected in stoichiometric amounts and suggested the co-occurrence of a physical process reducing the concentrations of CAHs in the riverbed. This process was the main process causing temporal variations in natural attenuation of the CAHs and was most likely dilution by surface water-mixing. However, higher spatial resolution monitoring of flow transients in the riverbed is required to prove dilution contributions due to dynamic surface water-groundwater flow exchanges. δ(13)C values and a site-specific isotope enrichment factor for reductive dechlorination of the main groundwater pollutant vinyl chloride (VC) allowed assessment of changes over time in the extent of both biotransformation and dilution of VC for different scenarios in which those processes either occurred consecutively or simultaneously between 120 and 20 cm depth in the riverbed. The extent of reductive dechlorination of VC ranged from 27 to 89% and differed spatially but was remarkably stable over time, whereas the extent of VC reduction by dilution ranged from 6 to 94%, showed large temporal variations, and was often the main process contributing to the reduction of VC discharge into the river. Copyright © 2012 Elsevier Ltd. All rights reserved.

Temporal variation of meandering intensity and domain-wide lateral oscillations of the Gulf Stream

NASA Technical Reports Server (NTRS)

Lee, Tong; Cornillon, Peter

1995-01-01

The path of the Gulf Stream exhibits two modes of variability: wavelike spatial meanders associated with instability processes and large-sale lateral shifts of the path presumably due to atmospheric forcing. The objectives of this study are to examine the temporal variation of the intensity of spatial meandering in the stream, to characterize large-scale lateral oscillations in the stream's path, and to study the correlation betwen these two dynamically distinct modes of variability. The data used for this analysis are path displacemets ofthe Gulf Stream between 75 deg and 60 deg W obtained from AVHRR-derived (Advanced Very High Resolution Radiometer) infrared images for the period April 1982 through December 1989. Meandering intensity, measured by the spatial root-mean-sqaure displacement of the stream path, displays a 9-month dominant periodicity which is persistent through the study period. The 9-month fluctuation in meandering intensity may be related to the interaction of Rosseby waves with the stream. Interannual variation of meandering intensity is also found to be significant, with meandering being mich more intense during 1985 than it was in 1987. Annual variation, however,is weak and not well-defined.The spatially averaged position of the stream, which reflects nonmeandering large-scale lateral oscillations of the stream path, is dominated by an annual cycle. On average, the mean position is farthest north in November and farthest south in April. The first empirical orthogonal function mode of the space-time path displacements represents lateral oscillatins that are in-phase over the space-time domain. Interannual oscillations are also observed and are found to be weaker than the annual oscillation. The eigenvalue of the first mode indicates that about 21.5% of the total space-time variability of the stream path can be attibuted to domain-wide lateral oscillation. The correlation between meandering intensity and domain-wide lateral oscillations is very weak.

Pluto's interaction with the solar wind

NASA Technical Reports Server (NTRS)

Bagenal, Fran; Mcnutt, Ralph L., Jr.

1989-01-01

If Pluto's atmospheric escape rate is significantly greater than 1.5 x 10 to the 27th molecules/s then the interaction with the tenuous solar wind at 30 A.U. will be like that of a comet. There will be extensive ion pick-up upstream and the size of the interaction region will vary directly with variations in the solar wind flux. If the escape flux is much less, then one expects that the solar wind will be deflected around Pluto's ionosphere in a Venus-like interaction. In either case, the weak interplanetary magnetic field at 30 A.U. results in very large gyroradii for the picked-up ions and a thick bow shock, necessitating a kinetic treatment of the interaction. Strong variations in the size of the interaction region are expected on time scales of days due to changes in the solar wind.

Precise measurement of the performance of thermoelectric modules

NASA Astrophysics Data System (ADS)

Díaz-Chao, Pablo; Muñiz-Piniella, Andrés; Selezneva, Ekaterina; Cuenat, Alexandre

2016-08-01

The potential exploitation of thermoelectric modules into mass market applications such as exhaust gas heat recovery in combustion engines requires an accurate knowledge of their performance. Further expansion of the market will also require confidence on the results provided by suppliers to end-users. However, large variation in performance and maximum operating point is observed for identical modules when tested by different laboratories. Here, we present the first metrological study of the impact of mounting and testing procedures on the precision of thermoelectric modules measurement. Variability in the electrical output due to mechanical pressure or type of thermal interface materials is quantified for the first time. The respective contribution of the temperature difference and the mean temperature to the variation in the output performance is quantified. The contribution of these factors to the total uncertainties in module characterisation is detailed.

Low- and mid-latitude ionospheric electric fields during the January 1984 GISMOS campaign

NASA Technical Reports Server (NTRS)

Fejer, B. G.; Kelley, M. C.; Senior, C.; De La Beaujardiere, O.; Lepping, R.

1990-01-01

The electrical coupling between the high-, middle-, and low-latitude ionospheres during January 17-19, 1984 is examined, using interplanetary and high-latitude magnetic field data together with F region plasma drift measurements from the EISCAT, Sondre Stromfjord, Millstone Hill, Saint-Santin, Arecibo, and Jicamarca incoherent scatter radars. The penetration both the zonal and meridional electric field components of high-latitude origin into the low-latitude and the equatorial ionospheres are studied. The observations in the postmidnight sector are used to compare the longitudinal variations of the zonal perturbation electric field with predictions made from global convection models. The results show that the meridional electric field perturbations are considerably more attenuated with decreasing latitude than the zonal fluctuations. It is concluded that variations in the meridional electric field at low latitudes are largely due to dynamo effects.

Climate Change on Mars: Cloud Greenhouse Effects in the Recent Past

NASA Astrophysics Data System (ADS)

Haberle, Robert M.; Kahre, Melinda A.; Hollingsorth, Jeffery L.

2014-11-01

The large variations in Mars’ orbit parameters are known to be significant drivers of climate change. We present results from an updated version of the Ames GCM that shows at times of high obliquity it is possible that water ice clouds from a greatly intensified Martian hydrological cycle may have produced a greenhouse effect strong enough to raise global mean surface temperatures by several tens of degrees Kelvin. It is made possible by the ability of the Martian atmosphere to transport water to high altitudes where cold water ice clouds form, reduce the outgoing long wave radiation, and cause surface temperatures to rise to maintain global energy balance. Since Mars spends much of its time at high obliquity, these results suggest that Mars undergoes even more significant climate change due to orbital variations than previously thought.

The determination of ionospheric electron content and distribution from satellite observations. Part 2. Results of the analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garriott, O K

1960-04-01

The results of observations of the radio transmissions from Sputnik III (1958 δ 2) in an 8-month period are presented. The measurements of integrated electron density are made in two ways, described in part 1. The measurements reveal the diurnal variation of the total ionospheric electron content; and the ratio of the total content to the content of the lower ionosphere below the height of maximum density in the F layer is obtained. An estimate of the average electron-density profile above the F-layer peak is made possible by the slow variation in the height of the satellite due to rotationmore » of the perigee position. The gross effects of large magnetic storms on the electron content and distribution are found.« less

Meteor Shower Activity Derived from "Meteor Watching Public-Campaign" in Japan

NASA Technical Reports Server (NTRS)

Sato, M.; Watanabe, J.

2011-01-01

We tried to analyze activities of meteor showers from accumulated data collected by public campaigns for meteor showers which were performed as outreach programs. The analyzed campaigns are Geminids (in 2007 and 2009), Perseids (in 2008 and 2009), Quadrantids (in 2009) and Orionids (in 2009). Thanks to the huge number of reports, the derived time variations of the activities of meteor showers is very similar to those obtained by skilled visual observers. The values of hourly rates are about one-fifth (Geminids 2007) or about one-fourth (Perseids 2008) compared with the data of skilled observers, mainly due to poor observational sites such as large cities and urban areas, together with the immature skill of participants in the campaign. It was shown to be highly possible to estimate time variation in the meteor shower activity from our campaign.

Differentiation in Coregonus zenithicus in Lake Superior

USGS Publications Warehouse

Todd, Thomas N.; Smith, Gerald R.

1980-01-01

Morphological variation in Coregonus zenithicus has long plagued biologists working on Lake Superior ciscoes. Some of this variation is due to allometric growth; earlier workers incorrectly recognized large C. zenithicus as a distinct species, C. nigripinnis cyanopterus. Coregonus reighardi dymondi is a variant of C. zenithicus in northern bays of Lake Superior and Lake Nipigon. The morphological differences between members of spring and fall spawning populations of C. zenithicus in Lake Superior are no greater than those between geographically separate populations. We conclude that spawning time and geographic isolation act similarly in effecting differentiation of coregonine populations, and that populations with different spawning times do not necessarily represent different species.Key words: Coregonus zenithicus, cisco, Great Lakes, multivariate morphometrics, endangered species, taxonomy

Variation of surface water spectral response as a function of in situ sampling technique

NASA Technical Reports Server (NTRS)

Davis, Bruce A.; Hodgson, Michael E.

1988-01-01

Tests were carried out to determine the spectral variation contributed by a particular sampling technique. A portable radiometer was used to measure the surface water spectral response. Variation due to the reflectance of objects near the radiometer (i.e., the boat side) during data acquisition was studied. Consideration was also given to the variation due to the temporal nature of the phenomena (i.e., wave activity).

THERMAL PHASE VARIATIONS OF WASP-12b: DEFYING PREDICTIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cowan, Nicolas B.; Shekhtman, Louis M.; Machalek, Pavel

2012-03-01

We report Warm Spitzer full-orbit phase observations of WASP-12b at 3.6 and 4.5 {mu}m. This extremely inflated hot Jupiter is thought to be overflowing its Roche lobe, undergoing mass loss and accretion onto its host star, and has been claimed to have a C/O ratio in excess of unity. We are able to measure the transit depths, eclipse depths, thermal and ellipsoidal phase variations at both wavelengths. The large-amplitude phase variations, combined with the planet's previously measured dayside spectral energy distribution, are indicative of non-zero Bond albedo and very poor day-night heat redistribution. The transit depths in the mid-infrared-(R{sub p}more » /R{sub *}){sup 2} = 0.0123(3) and 0.0111(3) at 3.6 and 4.5 {mu}m, respectively-indicate that the atmospheric opacity is greater at 3.6 than at 4.5 {mu}m, in disagreement with model predictions, irrespective of C/O ratio. The secondary eclipse depths are consistent with previous studies: F{sub day}/F{sub *} = 0.0038(4) and 0.0039(3) at 3.6 and 4.5 {mu}m, respectively. We do not detect ellipsoidal variations at 3.6 {mu}m, but our parameter uncertainties-estimated via prayer-bead Monte Carlo-keep this non-detection consistent with model predictions. At 4.5 {mu}m, on the other hand, we detect ellipsoidal variations that are much stronger than predicted. If interpreted as a geometric effect due to the planet's elongated shape, these variations imply a 3:2 ratio for the planet's longest:shortest axes and a relatively bright day-night terminator. If we instead presume that the 4.5 {mu}m ellipsoidal variations are due to uncorrected systematic noise and we fix the amplitude of the variations to zero, the best-fit 4.5 {mu}m transit depth becomes commensurate with the 3.6 {mu}m depth, within the uncertainties. The relative transit depths are then consistent with a solar composition and short scale height at the terminator. Assuming zero ellipsoidal variations also yields a much deeper 4.5 {mu}m eclipse depth, consistent with a solar composition and modest temperature inversion. We suggest future observations that could distinguish between these two scenarios.« less

Variability of measured sonic boom signatures. Volume 2: Data report

NASA Technical Reports Server (NTRS)

Elmer, K. R.; Joshi, M. C.

1994-01-01

Sonic boom signatures from two databases, the BOOMFILE and the XB-70, were analyzed in terms of C-weighted sound exposure level (CSEL), A-weighted sound exposure level (ASEL), and Stevens Mark VII perceived level (PLdB), as well as the more traditional peak positive overpressure and rise time. The variability of these parameters due to propagation through atmosphere was analyzed for different aircraft Mach number and altitude groups. The low Mach number/low altitude group had significantly greater variation in rise time, overpressure, and loudness level than the high Mach number/high altitude group. The loudness of measured booms were found to have a variation of up to 25 dB relative to the loudness of boom predicted for a non-turbulent atmosphere. This is due primarily to the steeper ray paths of the high Mach number/high altitude group and the corresponding shorter distances traveled by these rays through the lower atmosphere resulting in reduced refraction effects. The general trend of decreased overpressure and loudness level with increasing lateral distance was also seen. Sonic boom signatures from early morning flights had less variation in rise time and overpressure than afternoon flights because of reduced turbulence. Measures of asymmetry (difference between compression and expansion portion of the signature) showed that the variability in Delta loudness level was greater than the variability in Delta overpressure due to the large influence of turbulence on rise time. Lastly, analysis of data within 50 percent of lateral cutoff showed that the mean value for overpressure and loudness level was independent of time of day but that the frequency with which it occurred was greater in the morning. This is a clear indicator of increased turbulence in the afternoon.

Influence of Transient Atmospheric Circulation on the Surface Heating of the Pacific Warm Pool

NASA Technical Reports Server (NTRS)

Chou, Ming-Dah; Chou, Shu-Hsien; Chan, Pui-King

2003-01-01

Analyses of data on clouds, winds, and surface heat fluxes show that the transient behavior of basin-wide large-scale circulation has a significant influence on the warm pool sea surface temperature (SST). Trade winds converge to regions of the highest SST in the equatorial western Pacific. These regions have the largest cloud cover and smallest wind speed. Both surface solar heating and evaporative cooling are weak. The reduced evaporative cooling due to weakened winds exceeds the reduced solar heating due to enhanced cloudiness. The result is a maximum surface heating in the strong convective and high SST regions. Data also show that the maximum surface heating in strong convective regions is interrupted by transient atmospheric and oceanic circulation. Due to the seasonal variation of the insolation at the top of the atmosphere, trade winds and clouds also experience seasonal variations. Regions of high SST and low-level convergence follow the Sun, where the surface heating is a maximum. As the Sun moves away from a convective region, the strong trade winds set in, and the evaporative cooling enhances, resulting in a net cooling of the surface. During an El Nino, the maximum SST and convective region shifts eastward from the maritime continent to the equatorial central Pacific. Following the eastward shift of the maximum SST, the region of maximum cloudiness and surface heating also shift eastward. As the atmospheric and oceanic circulation returns to normal situations, the trade winds increase and the surface heating decreases. We conclude that the evaporative cooling associated with the seasonal and interannual variations of trade winds is one of the major factors that modulate the SST distribution of the Pacific warm pool.

Variations in photon energy spectra of a 6 MV beam and their impact on TLD response

PubMed Central

Scarboro, Sarah B.; Followill, David S.; Howell, Rebecca M.; Kry, Stephen F.

2011-01-01

Purpose: Measurement of the absorbed dose from radiotherapy beams is an essential component of providing safe and reproducible treatment. For an energy-dependent dosimeter such as thermoluminescent dosimeters (TLDs), it is generally assumed that the energy spectrum is constant throughout the treatment field and is unperturbed by field size, depth, field modulation, or heterogeneities. However, this does not reflect reality and introduces error into clinical dose measurements. The purpose of this study was to evaluate the variability in the energy spectrum of a Varian 6 MV beam and to evaluate the impact of these variations in photon energy spectra on the response of a common energy-dependent dosimeter, TLD. Methods: Using Monte Carlo methods, we calculated variations in the photon energy spectra of a 6 MV beam as a result of variations of treatment parameters, including field size, measurement location, the presence of heterogeneities, and field modulation. The impact of these spectral variations on the response of the TLD is largely based on increased photoelectric effect in the dosimeter, and this impact was calculated using Burlin cavity theory. Measurements of the energy response were also made to determine the additional energy response due to all intrinsic and secondary effects. Results: For most in-field measurements, regardless of treatment parameter, the dosimeter response was not significantly affected by the spectral variations (<1% effect). For measurement points outside of the treatment field, where the spectrum is softer, the TLD over-responded by up to 12% due to an increased probability of photoelectric effect in the TLD material as well as inherent ionization density effects that play a role at low photon energies. Conclusions: It is generally acceptable to ignore the impact of variations in the photon spectrum on the measured dose for locations within the treatment field. However, outside the treatment field, the spectra are much softer, and a correction factor is generally appropriate. The results of this work have determined values for this factor, which range from 0.88 to 0.99 depending on the specific irradiation conditions. PMID:21776799

Measurement and Simulation of the Variation in Proton-Induced Energy Deposition in Large Silicon Diode Arrays

NASA Technical Reports Server (NTRS)

Howe, Christina L.; Weller, Robert A.; Reed, Robert A.; Sierawski, Brian D.; Marshall, Paul W.; Marshall, Cheryl J.; Mendenhall, Marcus H.; Schrimpf, Ronald D.

2007-01-01

The proton induced charge deposition in a well characterized silicon P-i-N focal plane array is analyzed with Monte Carlo based simulations. These simulations include all physical processes, together with pile up, to accurately describe the experimental data. Simulation results reveal important high energy events not easily detected through experiment due to low statistics. The effects of each physical mechanism on the device response is shown for a single proton energy as well as a full proton space flux.

Fused Silica and Other Transparent Window Materials

NASA Technical Reports Server (NTRS)

Salem, Jon

2016-01-01

Several transparent ceramics, such as spinel and AlONs are now being produced in sufficient large areas to be used in space craft window applications. The work horse transparent material for space missions from Apollo to the International Space Station has been fused silica due in part to its low coefficient of expansion and optical quality. Despite its successful use, fused silica exhibits anomalies in its crack growth behavior, depending on environmental preconditioning and surface damage. This presentation will compare recent optical ceramics to fused silica and discuss sources of variation in slow crack growth behavior.

Vertical motions in the Uranian atmosphere - An analysis of radio observations

NASA Technical Reports Server (NTRS)

Hofstadter, Mark D.; Berge, Glenn L.; Muhleman, Duane O.

1990-01-01

The present, 6-cm radio map of Uranus indicates latitudinal features which may be due to vertical motions of the atmosphere. It appears in light of Voyager IR measurements as well as previously obtained radio data that these large-scale vertical motions, which have not undergone significant changes over the course of 8 years, extend from the 0.1- to the 45-bar levels; this span corresponds to a height of the order of 250 km. The latitudinal structures are believed to be primarily caused by horizontal variations of absorber abundances.

Effect of Gyroviscosity on Tearing Modes in Tokamak Plasmas

NASA Astrophysics Data System (ADS)

White, Ryan; Glasser, Alan

2017-10-01

We present an extension of the Glasser-Greene-Johnson equations, incorporating the Braginskii gyroviscosity. It is found that the dominant terms from the gyroviscous stress are all due to poloidal variation of the equilibrium profile, implying that these physical effects are not captured in a large-aspect-ratio (cylindrical) model. Because these purely toroidal contributions dominate, we conclude that thewell-known ``gyroviscous cancellation'' is a higher-order effect in toroidal confinement systems. We also present preliminary numerical results showing the effect of gyroviscosity on tearing mode stability. ORISE/DOE Fusion Energy Sciences Postdoctoral Fellowship.

The nature of the gravity anomalies associated with large young lunar craters

NASA Technical Reports Server (NTRS)

Dvorak, J.; Phillips, R. J.

1977-01-01

The negative Bouguer anomalies (i.e., mass deficiencies) associated with four young lunar craters are analyzed. Model calculations based on generalizations made from studies of terrestrial impact structures suggest that the major contribution to the Bouguer anomaly for these lunar craters is due to a lens of brecciated material confined within the present crater rim crest and extending vertically to at least a depth of one-third the crater rim diameter. Calculations also reveal a systematic variation in the magnitude of the mass deficiencies with the cube of the crater diameter.

Gas transfer between the atmosphere and irrigated sugarcane plantation sites under different rainfall in Hawai'i

NASA Astrophysics Data System (ADS)

Miyazawa, Y.; Giambelluca, T. W.; Crow, S. E.; Mudd, R. G.; Youkhana, A.; Nullet, M.; Nakahata, M.

2015-12-01

Sugarcane plantation land cover is increasing in area in Brazil, South Asia and the Pacific Islands because of the growing demand for sugar and biofuel production. While a large portion of sugarcane cultivated in Brazil is rain-fed and experiences drought influences on gas exchange, sugarcane in Hawai'i is thought to be buffered from drought effects because it is drip irrigated. Knowledge about carbon sequestration and evapotranspiration rates is fundamental both for the prediction of sugar and biofuel production and for water resource management for the large plantations. To understand gas transfer under spatially and temporally heterogeneous environments, we investigated the leaf- soil- and stand-scale gas transfer processes at two irrigated sugarcane plantation study sites in Hawai'i with contrasting rainfall. Gas and energy transfers were monitored using eddy covariance systems for a full- and later half- crop cycle. Leaf ecophysiological traits were measured for stands of different ages to evaluate the effects of stand age on gas transfer. Carbon sequestration rates (Fc) showed a strong relationship with solar radiation with small differences between sites. Latent heat flux expressed as the evapotranspiration rates (ET) also had a strong relationship with solar radiation, but showed seasonality due to variations in biological control (surface conductance) and atmospheric evaporative demand. The difference in ET and its responses to environments was less clear partly buffered by the differences in the stand age and seasons. The stable Fc-solar radiation relationship despite the variation in surface conductance was partly due to the saturation of net photosynthetic rates with intercellular CO2 concentration and the low sensitivity of net photosynthesis to variations in surface conductance in sugarcane with the C4 photosynthesis pathway. The response of gas transfer to periodic irrigation, rainfall and age-related changes in leaf ecophysiological traits will be discussed.

VARIATIONS OF MID- AND FAR-INFRARED LUMINOSITIES AMONG EARLY-TYPE GALAXIES: RELATION TO STELLAR METALLICITY AND COLD DUST

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathews, William G.; Brighenti, Fabrizio; Temi, Pasquale

The Hubble morphological sequence from early to late galaxies corresponds to an increasing rate of specific star formation. The Hubble sequence also follows a banana-shaped correlation between 24 and 70 {mu}m luminosities, both normalized with the K-band luminosity. We show that this correlation is significantly tightened if galaxies with central active galactic nucleus (AGN) emission are removed, but the cosmic scatter of elliptical galaxies in both 24 and 70 {mu}m luminosities remains significant along the correlation. We find that the 24 {mu}m variation among ellipticals correlates with stellar metallicity, reflecting emission from hot dust in winds from asymptotic giant branchmore » stars of varying metallicity. Infrared surface brightness variations in elliptical galaxies indicate that the K - 24 color profile is U-shaped for reasons that are unclear. In some elliptical galaxies, cold interstellar dust emitting at 70 and 160 {mu}m may arise from recent gas-rich mergers. However, we argue that most of the large range of 70 {mu}m luminosity in elliptical galaxies is due to dust transported from galactic cores by feedback events in (currently IR-quiet) AGNs. Cooler dusty gas naturally accumulates in the cores of elliptical galaxies due to dust-cooled local stellar mass loss and may accrete onto the central black hole, releasing energy. AGN-heated gas can transport dust in cores 5-10 kpc out into the hot gas atmospheres where it radiates extended 70 {mu}m emission but is eventually destroyed by sputtering. This, and some modest star formation, defines a cycle of dust creation and destruction. Elliptical galaxies evidently undergo large transient excursions in the banana plot in times comparable to the sputtering time or AGN duty cycle, 10 Myr. Normally regarded as passive, elliptical galaxies are the most active galaxies in the IR color-color correlation.« less

Between-Site Differences in the Scale of Dispersal and Gene Flow in Red Oak

PubMed Central

Moran, Emily V.; Clark, James S.

2012-01-01

Background Nut-bearing trees, including oaks (Quercus spp.), are considered to be highly dispersal limited, leading to concerns about their ability to colonize new sites or migrate in response to climate change. However, estimating seed dispersal is challenging in species that are secondarily dispersed by animals, and differences in disperser abundance or behavior could lead to large spatio-temporal variation in dispersal ability. Parentage and dispersal analyses combining genetic and ecological data provide accurate estimates of current dispersal, while spatial genetic structure (SGS) can shed light on past patterns of dispersal and establishment. Methodology and Principal Findings In this study, we estimate seed and pollen dispersal and parentage for two mixed-species red oak populations using a hierarchical Bayesian approach. We compare these results to those of a genetic ML parentage model. We also test whether observed patterns of SGS in three size cohorts are consistent with known site history and current dispersal patterns. We find that, while pollen dispersal is extensive at both sites, the scale of seed dispersal differs substantially. Parentage results differ between models due to additional data included in Bayesian model and differing genotyping error assumptions, but both indicate between-site dispersal differences. Patterns of SGS in large adults, small adults, and seedlings are consistent with known site history (farmed vs. selectively harvested), and with long-term differences in seed dispersal. This difference is consistent with predator/disperser satiation due to higher acorn production at the low-dispersal site. While this site-to-site variation results in substantial differences in asymptotic spread rates, dispersal for both sites is substantially lower than required to track latitudinal temperature shifts. Conclusions Animal-dispersed trees can exhibit considerable spatial variation in seed dispersal, although patterns may be surprisingly constant over time. However, even under favorable conditions, migration in heavy-seeded species is likely to lag contemporary climate change. PMID:22563504

Quantitative assessment of anatomical change using a virtual proton depth radiograph for adaptive head and neck proton therapy.

PubMed

Wang, Peng; Yin, Lingshu; Zhang, Yawei; Kirk, Maura; Song, Gang; Ahn, Peter H; Lin, Alexander; Gee, James; Dolney, Derek; Solberg, Timothy D; Maughan, Richard; McDonough, James; Teo, Boon-Keng Kevin

2016-03-08

The aim of this work is to demonstrate the feasibility of using water-equivalent thickness (WET) and virtual proton depth radiographs (PDRs) of intensity corrected cone-beam computed tomography (CBCT) to detect anatomical change and patient setup error to trigger adaptive head and neck proton therapy. The planning CT (pCT) and linear accelerator (linac) equipped CBCTs acquired weekly during treatment of a head and neck patient were used in this study. Deformable image registration (DIR) was used to register each CBCT with the pCT and map Hounsfield units (HUs) from the planning CT (pCT) onto the daily CBCT. The deformed pCT is referred as the corrected CBCT (cCBCT). Two dimensional virtual lateral PDRs were generated using a ray-tracing technique to project the cumulative WET from a virtual source through the cCBCT and the pCT onto a virtual plane. The PDRs were used to identify anatomic regions with large variations in the proton range between the cCBCT and pCT using a threshold of 3 mm relative difference of WET and 3 mm search radius criteria. The relationship between PDR differences and dose distribution is established. Due to weight change and tumor response during treatment, large variations in WETs were observed in the relative PDRs which corresponded spatially with an increase in the number of failing points within the GTV, especially in the pharynx area. Failing points were also evident near the posterior neck due to setup variations. Differences in PDRs correlated spatially to differences in the distal dose distribution in the beam's eye view. Virtual PDRs generated from volumetric data, such as pCTs or CBCTs, are potentially a useful quantitative tool in proton therapy. PDRs and WET analysis may be used to detect anatomical change from baseline during treatment and trigger further analysis in adaptive proton therapy.

LAMOST Spectrograph Response Curves: Stability and Application to Flux Calibration

NASA Astrophysics Data System (ADS)

Du, Bing; Luo, A.-Li; Kong, Xiao; Zhang, Jian-Nan; Guo, Yan-Xin; Cook, Neil James; Hou, Wen; Yang, Hai-Feng; Li, Yin-Bi; Song, Yi-Han; Chen, Jian-Jun; Zuo, Fang; Wu, Ke-Fei; Wang, Meng-Xin; Wu, Yue; Wang, You-Fen; Zhao, Yong-Heng

2016-12-01

The task of flux calibration for Large sky Area Multi-Object Spectroscopic Telescope (LAMOST) spectra is difficult due to many factors, such as the lack of standard stars, flat-fielding for large field of view, and variation of reddening between different stars, especially at low Galactic latitudes. Poor selection, bad spectral quality, or extinction uncertainty of standard stars not only might induce errors to the calculated spectral response curve (SRC) but also might lead to failures in producing final 1D spectra. In this paper, we inspected spectra with Galactic latitude | b| ≥slant 60^\\circ and reliable stellar parameters, determined through the LAMOST Stellar Parameter Pipeline (LASP), to study the stability of the spectrograph. To guarantee that the selected stars had been observed by each fiber, we selected 37,931 high-quality exposures of 29,000 stars from LAMOST DR2, and more than seven exposures for each fiber. We calculated the SRCs for each fiber for each exposure and calculated the statistics of SRCs for spectrographs with both the fiber variations and time variations. The result shows that the average response curve of each spectrograph (henceforth ASPSRC) is relatively stable, with statistical errors ≤10%. From the comparison between each ASPSRC and the SRCs for the same spectrograph obtained by the 2D pipeline, we find that the ASPSRCs are good enough to use for the calibration. The ASPSRCs have been applied to spectra that were abandoned by the LAMOST 2D pipeline due to the lack of standard stars, increasing the number of LAMOST spectra by 52,181 in DR2. Comparing those same targets with the Sloan Digital Sky Survey (SDSS), the relative flux differences between SDSS spectra and LAMOST spectra with the ASPSRC method are less than 10%, which underlines that the ASPSRC method is feasible for LAMOST flux calibration.

Natural and Human Impacts on Recent Development of Asian Large Rivers and Deltas

NASA Astrophysics Data System (ADS)

Liu, P.; Lu, C.

2014-12-01

Most recent data analysis indicates sediment loads in most of Asian large rivers (like, Yellow, Yangtze, Pearl, Chao Phraya, Indus, Krishna, Godavari, etc) have decreased up to 80-90% in the past 60 years. Correspondingly, most of Asian large river deltas are facing severe sediment starving; delta shoreline comparisons indicate that some are under strong coastal erosion. For examples, the Yellow River Delta has been retreating since 1990s when its annual sediment load has kept below 300 million tons. The Yangtze River delta kept growing before Three Gorges Dams was operating, and began to be eroded from the year 2003 to 2009, and then prograded locally due to the Deep Water Navigation Project. The Mekong Delta shoreline has also been dynamically changing with the sediment flux variation, eroding from 1989 to 1996 and prograding from 1996 to 2002. More information is available at http://www.meas.ncsu.edu/sealevel

Large-eddy simulations of a Salt Lake Valley cold-air pool

NASA Astrophysics Data System (ADS)

Crosman, Erik T.; Horel, John D.

2017-09-01

Persistent cold-air pools are often poorly forecast by mesoscale numerical weather prediction models, in part due to inadequate parameterization of planetary boundary-layer physics in stable atmospheric conditions, and also because of errors in the initialization and treatment of the model surface state. In this study, an improved numerical simulation of the 27-30 January 2011 cold-air pool in Utah's Great Salt Lake Basin is obtained using a large-eddy simulation with more realistic surface state characterization. Compared to a Weather Research and Forecasting model configuration run as a mesoscale model with a planetary boundary-layer scheme where turbulence is highly parameterized, the large-eddy simulation more accurately captured turbulent interactions between the stable boundary-layer and flow aloft. The simulations were also found to be sensitive to variations in the Great Salt Lake temperature and Salt Lake Valley snow cover, illustrating the importance of land surface state in modelling cold-air pools.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, Shuaiqi; Xie, Shaocheng; Zhang, Yunyan

This study describes the characteristics of large-scale vertical velocity, apparent heating source ( Q 1) and apparent moisture sink ( Q 2) profiles associated with seasonal and diurnal variations of convective systems observed during the two intensive operational periods (IOPs) that were conducted from 15 February to 26 March 2014 (wet season) and from 1 September to 10 October 2014 (dry season) near Manaus, Brazil, during the Green Ocean Amazon (GoAmazon2014/5) experiment. The derived large-scale fields have large diurnal variations according to convective activity in the GoAmazon region and the morning profiles show distinct differences between the dry and wetmore » seasons. In the wet season, propagating convective systems originating far from the GoAmazon region are often seen in the early morning, while in the dry season they are rarely observed. Afternoon convective systems due to solar heating are frequently seen in both seasons. Accordingly, in the morning, there is strong upward motion and associated heating and drying throughout the entire troposphere in the wet season, which is limited to lower levels in the dry season. In the afternoon, both seasons exhibit weak heating and strong moistening in the boundary layer related to the vertical convergence of eddy fluxes. Here, a set of case studies of three typical types of convective systems occurring in Amazonia – i.e., locally occurring systems, coastal-occurring systems and basin-occurring systems – is also conducted to investigate the variability of the large-scale environment with different types of convective systems.« less

Variability and Maintenance of Turbulence in the Very Stable Boundary Layer

NASA Astrophysics Data System (ADS)

Mahrt, Larry

2010-04-01

The relationship of turbulence quantities to mean flow quantities, such as the Richardson number, degenerates substantially for strong stability, at least in those studies that do not place restrictions on minimum turbulence or non-stationarity. This study examines the large variability of the turbulence for very stable conditions by analyzing four months of turbulence data from a site with short grass. Brief comparisons are made with three additional sites, one over short grass on flat terrain and two with tall vegetation in complex terrain. For very stable conditions, any dependence of the turbulence quantities on the mean wind speed or bulk Richardson number becomes masked by large scatter, as found in some previous studies. The large variability of the turbulence quantities is due to random variations and other physical influences not represented by the bulk Richardson number. There is no critical Richardson number above which the turbulence vanishes. For very stable conditions, the record-averaged vertical velocity variance and the drag coefficient increase with the strength of the submeso motions (wave motions, solitary waves, horizontal modes and numerous more complex signatures). The submeso motions are on time scales of minutes and not normally considered part of the mean flow. The generation of turbulence by such unpredictable motions appears to preclude universal similarity theory for predicting the surface stress for very stable conditions. Large variation of the stress direction with respect to the wind direction for the very stable regime is also examined. Needed additional work is noted.

Temporal variation in size-assortative mating and male mate choice in a spider with amphisexual care

NASA Astrophysics Data System (ADS)

Moura, Rafael R.; Gonzaga, Marcelo O.

2017-04-01

Males should be more selective when they have a high investment in reproduction, especially in species with biparental or paternal care. In this context, male mate choice can promote size-assortative mating (SAM) when (1) large males win intrasexual disputes, (2) large females are more fecund, and (3) males prefer larger females to smaller ones. In the spider Manogea porracea, males exhibit high reproductive investment by building their webs above those of females and exhibiting extended care of offspring in the absence of females. Under these circumstances, we expect the occurrence of SAM and male preference for large females. Herein, we performed observations and experiments in the field to evaluate the hypotheses that (1) M. porracea mates assortatively by size and (2) SAM is influenced by male mate choice. Furthermore, we measured variables that could affect mating patterns, the sex ratios, and densities of both sexes. Pairing in M. porracea was positively size-assortative in 2012, but not in 2013. Large males won most disputes for mates and preferred larger females, which produced more eggs. The inconsistency in detection of SAM was due to population dynamics, namely variations in sex ratio and population density across the breeding season. Furthermore, we found that the significance of male mate choice on sexual selection of body size in M. porracea strongly depends on the competition intensity for mating opportunities. The traditional sexual selection hypothesis of SAM needs to be reviewed and must include measures of competition intensity.

Why size matters: the interactive influences of tree diameter distribution and sap flow parameters on upscaled transpiration.

PubMed

Berry, Z Carter; Looker, Nathaniel; Holwerda, Friso; Gómez Aguilar, León Rodrigo; Ortiz Colin, Perla; González Martínez, Teresa; Asbjornsen, Heidi

2018-02-01

In stands with a broad range of diameters, a small number of very large trees can disproportionately influence stand basal area and transpiration (Et). Sap flow-based Et estimates may be particularly sensitive to large trees due to nonlinear relationships between tree-level water use (Q) and tree diameter at breast height (DBH). Because Q is typically predicted on the basis of DBH and sap flow rates measured in a subset of trees and then summed to obtain Et, we assessed the relative importance of DBH and sap flow variables (sap velocity, Vs, and sapwood depth, Rs) in determining the magnitude of Et and its dependence on large trees in a tropical montane forest ecosystem. Specifically, we developed a data-driven simulation framework to vary the relationship between DBH and Vs and stand DBH distribution and then calculate Q, Et and the proportion of Et contributed by the largest tree in each stand. Our results demonstrate that variation in how Rs is determined in the largest trees can alter estimates up to 26% of Et while variation in how Vs is determined can vary results by up to 132%. Taken together, these results highlight a great need to expand our understanding of water transport in large trees as this hinders our ability to predict water fluxes accurately from stand to catchment scales. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Background Noises Versus Intraseasonal Variation Signals: Small vs. Large Convective Cloud Objects From CERES Aqua Observations

NASA Technical Reports Server (NTRS)

Xu, Kuan-Man

2015-01-01

During inactive phases of Madden-Julian Oscillation (MJO), there are plenty of deep but small convective systems and far fewer deep and large ones. During active phases of MJO, a manifestation of an increase in the occurrence of large and deep cloud clusters results from an amplification of large-scale motions by stronger convective heating. This study is designed to quantitatively examine the roles of small and large cloud clusters during the MJO life cycle. We analyze the cloud object data from Aqua CERES (Clouds and the Earth's Radiant Energy System) observations between July 2006 and June 2010 for tropical deep convective (DC) and cirrostratus (CS) cloud object types according to the real-time multivariate MJO index, which assigns the tropics to one of the eight MJO phases each day. The cloud object is a contiguous region of the earth with a single dominant cloud-system type. The criteria for defining these cloud types are overcast footprints and cloud top pressures less than 400 hPa, but DC has higher cloud optical depths (=10) than those of CS (<10). The size distributions, defined as the footprint numbers as a function of cloud object diameters, for particular MJO phases depart greatly from the combined (8-phase) distribution at large cloud-object diameters due to the reduced/increased numbers of cloud objects related to changes in the large-scale environments. The medium diameter corresponding to the combined distribution is determined and used to partition all cloud objects into "small" and "large" groups of a particular phase. The two groups corresponding to the combined distribution have nearly equal numbers of footprints. The medium diameters are 502 km for DC and 310 km for cirrostratus. The range of the variation between two extreme phases (typically, the most active and depressed phases) for the small group is 6-11% in terms of the numbers of cloud objects and the total footprint numbers. The corresponding range for the large group is 19-44%. In terms of the probability density functions of radiative and cloud physical properties, there are virtually no differences between the MJO phases for the small group, but there are significant differences for the large groups for both DC and CS types. These results suggest that the intreseasonal variation signals reside at the large cloud clusters while the small cloud clusters represent the background noises resulting from various types of the tropical waves with different wavenumbers and propagation speeds/directions.

New Results on the Seasonal Variations in Saturn's Thermal Plasma

NASA Astrophysics Data System (ADS)

Elrod, M. K.; Tseng, W.; Johnson, R. E.

2012-12-01

The region of the magnetosphere from the main rings to inside the orbit of Enceladus is populated by oxygen from the Saturn's ring atmosphere and water products from Enceladus. Therefore, we examined the CAPS plasma data for several equatorial periapsis passes from 2004 to 2012 for the region from 2.4 to 3.8 Saturn radii (~60,300 km) including Voyager 2 in order to separate the contributions from these two sources and to understand the temporal variations in the plasma. Because of the high background in this region, only eight orbits were used in this study. Using Voyager II data and CAPS data from 2004, and 2012 we show that large variations in ion density, temperature, and composition occur. Although the Enceladus plumes are variable, we propose that the large change in the ion density from 2004 to equinox near 2010 was likely due to the seasonal variation in the ring atmosphere (Elrod et al. 2012). Furthermore, when comparing the recent 2012 passes with the 2010 passes, where are much closer to Enceladus, and likely dominated by the water sources from this moon, we still see an increase in the signal between 2010 and 2012 indicating that there is likely still a seasonal variation throughout the region. This interpretation of the plasma data was in turn supported by a simple photochemical model which combined water products from Enceladus and with the seasonally variable oxygen from the the ring atmosphere (Tseng et al. 2012). In this presentation we will compare the results of our recent analysis of the 2012 data with our model for seasonal variations in the plasma source in this region. Elrod, M. K., W.-L. Tseng, R. J. Wilson, and R. E. Johnson (2012), Seasonal variations in Saturn's plasma between the main rings and Enceladus, J. Geophys. Res., 117, A03207, doi:10.1029/2011JA017332. Tseng, W.-L., et al., Modeling the seasonal variability of the plasma environment in Saturn's magnetosphere between main rings and Mimas. Planetary and Space Science (2012), http://dx.doi.org/10.1016/j.pss.2012.05.001

TomoMiner and TomoMinerCloud: A software platform for large-scale subtomogram structural analysis

PubMed Central

Frazier, Zachary; Xu, Min; Alber, Frank

2017-01-01

SUMMARY Cryo-electron tomography (cryoET) captures the 3D electron density distribution of macromolecular complexes in close to native state. With the rapid advance of cryoET acquisition technologies, it is possible to generate large numbers (>100,000) of subtomograms, each containing a macromolecular complex. Often, these subtomograms represent a heterogeneous sample due to variations in structure and composition of a complex in situ form or because particles are a mixture of different complexes. In this case subtomograms must be classified. However, classification of large numbers of subtomograms is a time-intensive task and often a limiting bottleneck. This paper introduces an open source software platform, TomoMiner, for large-scale subtomogram classification, template matching, subtomogram averaging, and alignment. Its scalable and robust parallel processing allows efficient classification of tens to hundreds of thousands of subtomograms. Additionally, TomoMiner provides a pre-configured TomoMinerCloud computing service permitting users without sufficient computing resources instant access to TomoMiners high-performance features. PMID:28552576

Honey: its medicinal property and antibacterial activity

PubMed Central

Mandal, Manisha Deb; Mandal, Shyamapada

2011-01-01

Indeed, medicinal importance of honey has been documented in the world's oldest medical literatures, and since the ancient times, it has been known to possess antimicrobial property as well as wound-healing activity. The healing property of honey is due to the fact that it offers antibacterial activity, maintains a moist wound condition, and its high viscosity helps to provide a protective barrier to prevent infection. Its immunomodulatory property is relevant to wound repair too. The antimicrobial activity in most honeys is due to the enzymatic production of hydrogen peroxide. However, another kind of honey, called non-peroxide honey (viz., manuka honey), displays significant antibacterial effects even when the hydrogen peroxide activity is blocked. Its mechanism may be related to the low pH level of honey and its high sugar content (high osmolarity) that is enough to hinder the growth of microbes. The medical grade honeys have potent in vitro bactericidal activity against antibiotic-resistant bacteria causing several life-threatening infections to humans. But, there is a large variation in the antimicrobial activity of some natural honeys, which is due to spatial and temporal variation in sources of nectar. Thus, identification and characterization of the active principle(s) may provide valuable information on the quality and possible therapeutic potential of honeys (against several health disorders of humans), and hence we discussed the medicinal property of honeys with emphasis on their antibacterial activities. PMID:23569748

Riverbed Hydrologic Exchange Dynamics in a Large Regulated River Reach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Tian; Bao, Jie; Huang, Maoyi

Hydrologic exchange flux (HEF) is an important hydrologic component in river corridors that includes both bidirectional (hyporheic) and unidirectional (gaining/losing) surface water – groundwater exchanges. Quantifying HEF rates in a large regulated river is difficult due to the large spatial domains, complexity of geomorphologic features and subsurface properties, and the great stage variations created by dam operations at multiple time scales. In this study, we developed a method that combined numerical modeling and field measurements for estimating HEF rates across the river bed in a 7‐km long reach of the highly regulated Columbia River. A high‐resolution computational fluid dynamics (CFD)more » modeling framework was developed and validated by field measurements and other modeling results to characterize the HEF dynamics across the river bed. We found that about 85% of the time from 2008‐2014 the river was losing water with an annual average net HEF rates across the river bed (Qz) of ‐2.3 m3 s−1 (negative indicating downwelling). June was the only month that the river gained water, with monthly averaged Qz of 0.8 m3 s−1. We also found that the daily dam operations increased the hourly gross gaining and losing rate over an average year of 8% and 2%, respectively. By investigating the HEF feedbacks at various time scales, we suggest that the dam operations could reduce the HEF at seasonal time scale by decreasing the seasonal flow variations, while also enhance the HEF at sub‐daily time scale by generating high frequency discharge variations. These changes could generate significant impacts on biogeochemical processes in the hyporheic zone.« less

A Reverse Taxonomic Approach to Assess Macrofaunal Distribution Patterns in Abyssal Pacific Polymetallic Nodule Fields

PubMed Central

Janssen, Annika; Kaiser, Stefanie; Meißner, Karin; Brenke, Nils; Menot, Lenaick; Martínez Arbizu, Pedro

2015-01-01

Heightened interest in the exploitation of deep seafloor minerals is raising questions on the consequences for the resident fauna. Assessing species ranges and determination of processes underlying current species distributions are prerequisites to conservation planning and predicting faunal responses to changing environmental conditions. The abyssal central Pacific nodule belt, located between the Clarion and Clipperton Fracture Zones (CCZ), is an area prospected for mining of polymetallic nodules. We examined variations in genetic diversity and broad-scale connectivity of isopods and polychaetes across the CCZ. Faunal assemblages were studied from two mining claims (the eastern German and French license areas) located 1300 km apart and influenced by different productivity regimes. Using a reverse taxonomy approach based on DNA barcoding, we tested to what extent distance and large-scale changes in environmental parameters lead to differentiation in two macrofaunal taxa exhibiting different functions and life-history patterns. A fragment of the mitochondrial gene Cytochrome Oxidase Subunit 1 (COI) was analyzed. At a 97% threshold the molecular operational taxonomic units (MOTUs) corresponded well to morphological species. Molecular analyses indicated high local and regional diversity mostly because of large numbers of singletons in the samples. Consequently, variation in composition of genotypic clusters between sites was exceedingly large partly due to paucity of deep-sea sampling and faunal patchiness. A higher proportion of wide-ranging species in polychaetes was contrasted with mostly restricted distributions in isopods. Remarkably, several cryptic lineages appeared to be sympatric and occurred in taxa with putatively good dispersal abilities, whereas some brooding lineages revealed broad distributions across the CCZ. Geographic distance could explain variation in faunal connectivity between regions and sites to some extent, while assumed dispersal capabilities were not as important. PMID:25671322

Physiologic volume of phosphorus during hemodialysis: predictions from a pseudo one-compartment model.

PubMed

Leypoldt, John K; Akonur, Alp; Agar, Baris U; Culleton, Bruce F

2012-10-01

The kinetics of plasma phosphorus concentrations during hemodialysis (HD) are complex and cannot be described by conventional one- or two-compartment kinetic models. It has recently been shown by others that the physiologic (or apparent distribution) volume for phosphorus (Vr-P) increases with increasing treatment time and shows a large variation among patients treated by thrice weekly and daily HD. Here, we describe the dependence of Vr-P on treatment time and predialysis plasma phosphorus concentration as predicted by a novel pseudo one-compartment model. The kinetics of plasma phosphorus during conventional and six times per week daily HD were simulated as a function of treatment time per session for various dialyzer phosphate clearances and patient-specific phosphorus mobilization clearances (K(M)). Vr-P normalized to extracellular volume from these simulations were reported and compared with previously published empirical findings. Simulated results were relatively independent of dialyzer phosphate clearance and treatment frequency. In contrast, Vr-P was strongly dependent on treatment time per session; the increase in Vr-P with treatment time was larger for higher values of K(M). Vr-P was inversely dependent on predialysis plasma phosphorus concentration. There was significant variation among predicted Vr-P values, depending largely on the value of K(M). We conclude that a pseudo one-compartment model can describe the empirical dependence of the physiologic volume of phosphorus on treatment time and predialysis plasma phosphorus concentration. Further, the variation in physiologic volume of phosphorus among HD patients is largely due to differences in patient-specific phosphorus mobilization clearance. © 2012 The Authors. Hemodialysis International © 2012 International Society for Hemodialysis.

Valles Marineris Hemisphere

NASA Image and Video Library

1996-06-03

Mosaic composed of 102 Viking Orbiter images of Mars, covering nearly a full hemisphere of the planet (approximate latitude -55 to 60 degrees, longitude 30 to 130 degrees). The mosaic is in a point-perspective projection with a scale of about 1 km/pixel. The color variations have been enhanced by a factor of about two, and the large-scale brightness variations (mostly due to sun-angle variations) have been normalized by large-scale filtering. The center of the scene shows the entire Valles Marineris canyon system, over 3,000 km long and up to 8 km deep, extending from Noctis Labyrinthus, the arcuate system of graben to the west, to the chaotic terrain to the east. Bright white layers of material in the eastern canyons may consist of carbonates deposited in ancient lakes. Huge ancient river channels begin from the chaotic terrain and from north-central canyons and run north. Many of the channels flowed into a basin called Acidalia Planitia, which is the dark area in the extreme north of this picture. The Viking 1 landing site (Mutch Memorial Station) is located in Chryse Planitia, south of Acidalia Planitia. The three Tharsis volcanoes (dark red spots), each about 25 km high, are visible to the west. The large crater with two prominent rings located at the bottom of this image is named Lowell, after the Flagstaff astronomer. The images were acquired by Viking Orbiter 1 in 1980 during early northern summer on Mars (Ls = 70 degrees); the atmosphere was relatively dust-free. A variety of clouds appear as bright blue streaks and hazes, and probably consist of water ice. Long, linear clouds north of central Valles Marineris appear to emanate from impact craters. http://photojournal.jpl.nasa.gov/catalog/PIA00003

The Relationship between Cranial Structure, Biomechanical Performance and Ecological Diversity in Varanoid Lizards

PubMed Central

McCurry, Matthew R.; Mahony, Michael; Clausen, Phillip D.; Quayle, Michelle R.; Walmsley, Christopher W.; Jessop, Tim S.; Wroe, Stephen; Richards, Heather; McHenry, Colin R.

2015-01-01

Skull structure is intimately associated with feeding ability in vertebrates, both in terms of specific performance measures and general ecological characteristics. This study quantitatively assessed variation in the shape of the cranium and mandible in varanoid lizards, and its relationship to structural performance (von Mises strain) and interspecific differences in feeding ecology. Geometric morphometric and linear morphometric analyses were used to evaluate morphological differences, and finite element analysis was used to quantify variation in structural performance (strain during simulated biting, shaking and pulling). This data was then integrated with ecological classes compiled from relevant scientific literature on each species in order to establish structure-function relationships. Finite element modelling results showed that variation in cranial morphology resulted in large differences in the magnitudes and locations of strain in biting, shaking and pulling load cases. Gracile species such as Varanus salvadorii displayed high strain levels during shaking, especially in the areas between the orbits. All models exhibit less strain during pull back loading compared to shake loading, even though a larger force was applied (pull =30N, shake = 20N). Relationships were identified between the morphology, performance, and ecology. Species that did not feed on hard prey clustered in the gracile region of cranial morphospace and exhibited significantly higher levels of strain during biting (P = 0.0106). Species that fed on large prey clustered in the elongate area of mandible morphospace. This relationship differs from those that have been identified in other taxonomic groups such as crocodiles and mammals. This difference may be due to a combination of the open ‘space-frame’ structure of the varanoid lizard skull, and the ‘pull back’ behaviour that some species use for processing large prey. PMID:26106889

Low gene copy number shows that arbuscular mycorrhizal fungi inherit genetically different nuclei.

PubMed

Hijri, Mohamed; Sanders, Ian R

2005-01-13

Arbuscular mycorrhizal fungi (AMF) are ancient asexually reproducing organisms that form symbioses with the majority of plant species, improving plant nutrition and promoting plant diversity. Little is known about the evolution or organization of the genomes of any eukaryotic symbiont or ancient asexual organism. Direct evidence shows that one AMF species is heterokaryotic; that is, containing populations of genetically different nuclei. It has been suggested, however, that the genetic variation passed from generation to generation in AMF is simply due to multiple chromosome sets (that is, high ploidy). Here we show that previously documented genetic variation in Pol-like sequences, which are passed from generation to generation, cannot be due to either high ploidy or repeated gene duplications. Our results provide the clearest evidence so far for substantial genetic differences among nuclei in AMF. We also show that even AMF with a very large nuclear DNA content are haploid. An underlying principle of evolutionary theory is that an individual passes on one or half of its genome to each of its progeny. The coexistence of a population of many genomes in AMF and their transfer to subsequent generations, therefore, has far-reaching consequences for understanding genome evolution.

Microstructure of the Sn-Cu{sub 6}Sn{sub 5} fibrous eutectic and its modification by segregation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Drevet, B.; Camel, D.; Favier, J.J.

The influence of segregation due to thermal convection on the microstructure of Sn-Cu{sub 6}Sn{sub 5} fibrous eutectic alloys is studied in a Bridgman type configuration. The eutectic microstructure is characterized by means of image analysis, X-ray diffraction and scanning and transmission electron microscopy. In the absence of segregation, the eutectic is regular and its growth controlled by that of the Cu{sub 6}Sn{sub 5} fibers. The effect of interphases on eutectic spacing, through orientation relationships between fibers and matrix, is also evidenced. The influence of segregation can be summed up by the following effects. At first, in agreement with the Jacksonmore » and Hunt model, it leads to a variation of the eutectic spacing which results from a variation of the fiber volume fraction. Then, the spacing is much greater than the one obtained in the absence of segregation, due to a different tin growth plane and non-optimized fiber/matrix orientation relationships. Finally, the absence of steady state leads to a large dispersion of the spacing associated with a microstructural disorder.« less

Light and Nutrient Dependent Responses in Secondary Metabolites of Plantago lanceolata Offspring Are Due to Phenotypic Plasticity in Experimental Grasslands

PubMed Central

Miehe-Steier, Annegret; Roscher, Christiane; Reichelt, Michael; Gershenzon, Jonathan; Unsicker, Sybille B.

2015-01-01

A few studies in the past have shown that plant diversity in terms of species richness and functional composition can modify plant defense chemistry. However, it is not yet clear to what extent genetic differentiation of plant chemotypes or phenotypic plasticity in response to diversity-induced variation in growth conditions or a combination of both is responsible for this pattern. We collected seed families of ribwort plantain (Plantago lanceolata) from six-year old experimental grasslands of varying plant diversity (Jena Experiment). The offspring of these seed families was grown under standardized conditions with two levels of light and nutrients. The iridoid glycosides, catalpol and aucubin, and verbascoside, a caffeoyl phenylethanoid glycoside, were measured in roots and shoots. Although offspring of different seed families differed in the tissue concentrations of defensive metabolites, plant diversity in the mothers' environment did not explain the variation in the measured defensive metabolites of P. lanceolata offspring. However secondary metabolite levels in roots and shoots were strongly affected by light and nutrient availability. Highest concentrations of iridoid glycosides and verbascoside were found under high light conditions, and nutrient availability had positive effects on iridoid glycoside concentrations in plants grown under high light conditions. However, verbascoside concentrations decreased under high levels of nutrients irrespective of light. The data from our greenhouse study show that phenotypic plasticity in response to environmental variation rather than genetic differentiation in response to plant community diversity is responsible for variation in secondary metabolite concentrations of P. lanceolata in the six-year old communities of the grassland biodiversity experiment. Due to its large phenotypic plasticity P. lanceolata has the potential for a fast and efficient adjustment to varying environmental conditions in plant communities of different species richness and functional composition. PMID:26336100

Downscaling Satellite Precipitation with Emphasis on Extremes: A Variational ℓ1-Norm Regularization in the Derivative Domain

NASA Astrophysics Data System (ADS)

Foufoula-Georgiou, E.; Ebtehaj, A. M.; Zhang, S. Q.; Hou, A. Y.

2014-05-01

The increasing availability of precipitation observations from space, e.g., from the Tropical Rainfall Measuring Mission (TRMM) and the forthcoming Global Precipitation Measuring (GPM) Mission, has fueled renewed interest in developing frameworks for downscaling and multi-sensor data fusion that can handle large data sets in computationally efficient ways while optimally reproducing desired properties of the underlying rainfall fields. Of special interest is the reproduction of extreme precipitation intensities and gradients, as these are directly relevant to hazard prediction. In this paper, we present a new formalism for downscaling satellite precipitation observations, which explicitly allows for the preservation of some key geometrical and statistical properties of spatial precipitation. These include sharp intensity gradients (due to high-intensity regions embedded within lower-intensity areas), coherent spatial structures (due to regions of slowly varying rainfall), and thicker-than-Gaussian tails of precipitation gradients and intensities. Specifically, we pose the downscaling problem as a discrete inverse problem and solve it via a regularized variational approach (variational downscaling) where the regularization term is selected to impose the desired smoothness in the solution while allowing for some steep gradients (called ℓ1-norm or total variation regularization). We demonstrate the duality between this geometrically inspired solution and its Bayesian statistical interpretation, which is equivalent to assuming a Laplace prior distribution for the precipitation intensities in the derivative (wavelet) space. When the observation operator is not known, we discuss the effect of its misspecification and explore a previously proposed dictionary-based sparse inverse downscaling methodology to indirectly learn the observation operator from a data base of coincidental high- and low-resolution observations. The proposed method and ideas are illustrated in case studies featuring the downscaling of a hurricane precipitation field.

Margin estimation and disturbances of irradiation field in layer-stacking carbon-ion beams for respiratory moving targets.

PubMed

Tajiri, Shinya; Tashiro, Mutsumi; Mizukami, Tomohiro; Tsukishima, Chihiro; Torikoshi, Masami; Kanai, Tatsuaki

2017-11-01

Carbon-ion therapy by layer-stacking irradiation for static targets has been practised in clinical treatments. In order to apply this technique to a moving target, disturbances of carbon-ion dose distributions due to respiratory motion have been studied based on the measurement using a respiratory motion phantom, and the margin estimation given by the square root of the summation Internal margin2+Setup margin2 has been assessed. We assessed the volume in which the variation in the ratio of the dose for a target moving due to respiration relative to the dose for a static target was within 5%. The margins were insufficient for use with layer-stacking irradiation of a moving target, and an additional margin was required. The lateral movement of a target converts to the range variation, as the thickness of the range compensator changes with the movement of the target. Although the additional margin changes according to the shape of the ridge filter, dose uniformity of 5% can be achieved for a spherical target 93 mm in diameter when the upward range variation is limited to 5 mm and the additional margin of 2.5 mm is applied in case of our ridge filter. Dose uniformity in a clinical target largely depends on the shape of the mini-peak as well as on the bolus shape. We have shown the relationship between range variation and dose uniformity. In actual therapy, the upper limit of target movement should be considered by assessing the bolus shape. © The Author 2017. Published by Oxford University Press on behalf of The Japan Radiation Research Society and Japanese Society for Radiation Oncology.

Decision support for the selection of reference sites using 137Cs as a soil erosion tracer

NASA Astrophysics Data System (ADS)

Arata, Laura; Meusburger, Katrin; Bürge, Alexandra; Zehringer, Markus; Ketterer, Michael E.; Mabit, Lionel; Alewell, Christine

2017-08-01

The classical approach of using 137Cs as a soil erosion tracer is based on the comparison between stable reference sites and sites affected by soil redistribution processes; it enables the derivation of soil erosion and deposition rates. The method is associated with potentially large sources of uncertainty with major parts of this uncertainty being associated with the selection of the reference sites. We propose a decision support tool to Check the Suitability of reference Sites (CheSS). Commonly, the variation among 137Cs inventories of spatial replicate reference samples is taken as the sole criterion to decide on the suitability of a reference inventory. Here we propose an extension of this procedure using a repeated sampling approach, in which the reference sites are resampled after a certain time period. Suitable reference sites are expected to present no significant temporal variation in their decay-corrected 137Cs depth profiles. Possible causes of variation are assessed by a decision tree. More specifically, the decision tree tests for (i) uncertainty connected to small-scale variability in 137Cs due to its heterogeneous initial fallout (such as in areas affected by the Chernobyl fallout), (ii) signs of erosion or deposition processes and (iii) artefacts due to the collection, preparation and measurement of the samples; (iv) finally, if none of the above can be assigned, this variation might be attributed to turbation processes (e.g. bioturbation, cryoturbation and mechanical turbation, such as avalanches or rockfalls). CheSS was exemplarily applied in one Swiss alpine valley where the apparent temporal variability called into question the suitability of the selected reference sites. In general we suggest the application of CheSS as a first step towards a comprehensible approach to test for the suitability of reference sites.

Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis

PubMed Central

Ghazanfar, Shila; Vuocolo, Tony; Morrison, Janna L.; Nicholas, Lisa M.; McMillen, Isabella C.; Yang, Jean Y. H.; Buckley, Michael J.

2017-01-01

Heritable trait variation within a population of organisms is largely governed by DNA variations that impact gene transcription and protein function. Identifying genetic variants that affect complex functional traits is a primary aim of population genetics studies, especially in the context of human disease and agricultural production traits. The identification of alleles directly altering mRNA expression and thereby biological function is challenging due to difficulty in isolating direct effects of cis-acting genetic variations from indirect trans-acting genetic effects. Allele specific gene expression or allelic imbalance in gene expression (AI) occurring at heterozygous loci provides an opportunity to identify genes directly impacted by cis-acting genetic variants as indirect trans-acting effects equally impact the expression of both alleles. However, the identification of genes showing AI in the context of the expression of all genes remains a challenge due to a variety of technical and statistical issues. The current study focuses on the discovery of genes showing AI using single nucleotide polymorphisms as allelic reporters. By developing a computational and statistical process that addressed multiple analytical challenges, we ranked 5,809 genes for evidence of AI using RNA-Seq data derived from brown adipose tissue samples from a cohort of late gestation fetal lambs and then identified a conservative subgroup of 1,293 genes. Thus, AI was extensive, representing approximately 25% of the tested genes. Genes associated with AI were enriched for multiple Gene Ontology (GO) terms relating to lipid metabolism, mitochondrial function and the extracellular matrix. These functions suggest that cis-acting genetic variations causing AI in the population are preferentially impacting genes involved in energy homeostasis and tissue remodelling. These functions may contribute to production traits likely to be under genetic selection in the population. PMID:28665992

The effect of subauroral polarization streams on the mid-latitude thermospheric disturbance neutral winds: a universal time effect

NASA Astrophysics Data System (ADS)

Wang, Hui; Zhang, Kedeng; Zheng, Zhichao; Ridley, Aaron James

2018-03-01

The temporal and spatial variations in thermospheric neutral winds at an altitude of 400 km in response to subauroral polarization streams (SAPS) are investigated using global ionosphere and thermosphere model simulations under the southward interplanetary magnetic field (IMF) condition. During SAPS periods the westward neutral winds in the subauroral latitudes are greatly strengthened at dusk. This is due to the ion drag effect, through which SAPS can accelerate neutral winds in the westward direction. The new findings are that for SAPS commencing at different universal times, the strongest westward neutral winds exhibit large variations in amplitudes. The ion drag and Joule heating effects are dependent on the solar illumination, which exhibit UT variations due to the displacement of the geomagnetic and geographic poles. With more sunlight, stronger westward neutral winds can be generated, and the center of these neutral winds shifts to a later magnetic local time than neutral winds with less solar illumination. In the Northern Hemisphere and Southern Hemisphere, the disturbance neutral wind reaches a maximum at 18:00 and 04:00 UT, and a minimum at 04:00 and 16:00 UT, respectively. There is a good correlation between the neutral wind velocity and cos0.5(SZA) (solar zenith angle). The reduction in the electron density and enhancement in the air mass density at an altitude of 400 km are strongest when the maximum solar illumination collocates with the SAPS. The correlation between the neutral wind velocity and cos0.5(SZA) is also good during the northward IMF period. The effect of a sine-wave oscillation of SAPS on the neutral wind also exhibits UT variations in association with the solar illumination.

Downscaling Satellite Precipitation with Emphasis on Extremes: A Variational 1-Norm Regularization in the Derivative Domain

NASA Technical Reports Server (NTRS)

Foufoula-Georgiou, E.; Ebtehaj, A. M.; Zhang, S. Q.; Hou, A. Y.

2013-01-01

The increasing availability of precipitation observations from space, e.g., from the Tropical Rainfall Measuring Mission (TRMM) and the forthcoming Global Precipitation Measuring (GPM) Mission, has fueled renewed interest in developing frameworks for downscaling and multi-sensor data fusion that can handle large data sets in computationally efficient ways while optimally reproducing desired properties of the underlying rainfall fields. Of special interest is the reproduction of extreme precipitation intensities and gradients, as these are directly relevant to hazard prediction. In this paper, we present a new formalism for downscaling satellite precipitation observations, which explicitly allows for the preservation of some key geometrical and statistical properties of spatial precipitation. These include sharp intensity gradients (due to high-intensity regions embedded within lower-intensity areas), coherent spatial structures (due to regions of slowly varying rainfall),and thicker-than-Gaussian tails of precipitation gradients and intensities. Specifically, we pose the downscaling problem as a discrete inverse problem and solve it via a regularized variational approach (variational downscaling) where the regularization term is selected to impose the desired smoothness in the solution while allowing for some steep gradients(called 1-norm or total variation regularization). We demonstrate the duality between this geometrically inspired solution and its Bayesian statistical interpretation, which is equivalent to assuming a Laplace prior distribution for the precipitation intensities in the derivative (wavelet) space. When the observation operator is not known, we discuss the effect of its misspecification and explore a previously proposed dictionary-based sparse inverse downscaling methodology to indirectly learn the observation operator from a database of coincidental high- and low-resolution observations. The proposed method and ideas are illustrated in case studies featuring the downscaling of a hurricane precipitation field.

Rivers in the sea - Can we quantify pigments in the Amazon and the Orinoco River plumes from space?

NASA Technical Reports Server (NTRS)

Muller-Karger, Frank E.; Walsh, John J.; Carder, Kendall L.; Zika, Rod G.

1989-01-01

Coastal Zone Color Scanner (CZCS) images of the western tropical Atlantic (1979-1982) were combined into monthly mean surface pigment fields. These suggest that Amazon River water flows along northeastern South America directly toward the Caribbean sea early in the year. After June, however, the North Brazil Current is shunted eastward, carrying a large fraction of Amazon water into the North Equatorial Countercurrent (NECC). This eastward flow causes diminished flow through the Caribbean, which permits northwestward dispersal of Orinoco River water due to local Ekman forcing. The Orinoco plume crosses the Caribbean, leading to seasonal variation in surface salinity near Puerto Rico. At least 50 percent of the pigment concentration estimated in these plumes seems due to viable phytoplankton.

New Interpretations of the Rayn Anticlines in the Arabian Basin Inferred from Gravity Modelling

NASA Astrophysics Data System (ADS)

AlMogren, S. M.; Mukhopadhyay, M.

2014-12-01

The Ryan Anticlines comprise of a regularly-spaced set of super-giant anticlines oriented NNW, developed due to E-W compression in the Arabian Basin. Most prominent of these being: the Ghawar Anticline, followed by the Summan, Khurais Anticlines and Qatar Arch. Gravity anomaly is largely characteristic for both Ryan Anticlines and its smaller size version the Jinadriah Anticline in the Riyadh Salt Basin. It displays a bipolar gravity field - a zone of gravity high running along the fold axis that is flanked by asymmetric gravity lows. Available structural models commonly infer structural uplift for the median gravity high but ignore the flanking lows. Here we interpret the bipolar gravity anomaly due primarily to such anticline structures, while, the flanking gravity lows are due to greater sediment thickness largely compacted and deformed over the basement depressions. Further complexities are created due to the salt layer and its migration at the lower horizons of sediment strata. Such diagnostic gravity anomaly pattern is taken here as an evidence for basement tectonics due to prevailing crustal dynamics in the Arabian Basin. Density inversion provides details on the subsurface density variation due to the folding and structural configuration for the sediment layers, including the salt layer, affected by basement deformation. This interpretation is largely supported by gravity forward and inversion models given in the present study what is partly constrained by the available seismic, MT and deep resistivity lines and surface geologic mapping. Most of the oil-gas fields in this part of the Arabian Basin are further known for salt diapirism. In this study the gravity interpretation help in identification of salt diapirism directly overlying the basement is firstly given here for Jinadriah Anticline; that is next extended to a regional geologic cross-section traversing the Ryan Anticlines to infer probable subsurface continuation of salt diapirs directly overlying the metamorphosed basement, sediment deformation pattern skirting the anticlines as well as their relationship of faulting to basement tectonics.

Multilevel Analysis of Trachomatous Trichiasis and Corneal Opacity in Nigeria: The Role of Environmental and Climatic Risk Factors on the Distribution of Disease.

PubMed

Smith, Jennifer L; Sivasubramaniam, Selvaraj; Rabiu, Mansur M; Kyari, Fatima; Solomon, Anthony W; Gilbert, Clare

2015-01-01

The distribution of trachoma in Nigeria is spatially heterogeneous, with large-scale trends observed across the country and more local variation within areas. Relative contributions of individual and cluster-level risk factors to the geographic distribution of disease remain largely unknown. The primary aim of this analysis is to assess the relationship between climatic factors and trachomatous trichiasis (TT) and/or corneal opacity (CO) due to trachoma in Nigeria, while accounting for the effects of individual risk factors and spatial correlation. In addition, we explore the relative importance of variation in the risk of trichiasis and/or corneal opacity (TT/CO) at different levels. Data from the 2007 National Blindness and Visual Impairment Survey were used for this analysis, which included a nationally representative sample of adults aged 40 years and above. Complete data were available from 304 clusters selected using a multi-stage stratified cluster-random sampling strategy. All participants (13,543 individuals) were interviewed and examined by an ophthalmologist for the presence or absence of TT and CO. In addition to field-collected data, remotely sensed climatic data were extracted for each cluster and used to fit Bayesian hierarchical logistic models to disease outcome. The risk of TT/CO was associated with factors at both the individual and cluster levels, with approximately 14% of the total variation attributed to the cluster level. Beyond established individual risk factors (age, gender and occupation), there was strong evidence that environmental/climatic factors at the cluster-level (lower precipitation, higher land surface temperature, higher mean annual temperature and rural classification) were also associated with a greater risk of TT/CO. This study establishes the importance of large-scale risk factors in the geographical distribution of TT/CO in Nigeria, supporting anecdotal evidence that environmental conditions are associated with increased risk in this context and highlighting their potential use in improving estimates of disease burden at large scales.

Coupled extremely light Ca and Fe isotopes in peridotites

NASA Astrophysics Data System (ADS)

Zhao, Xinmiao; Zhang, Zhaofeng; Huang, Shichun; Liu, Yufei; Li, Xin; Zhang, Hongfu

2017-07-01

Large metal stable isotopic variations have been observed in both extraterrestrial and terrestrial samples. For example, Ca exhibits large mass-dependent isotopic variation in terrestrial igneous rocks and mantle minerals (on the order of ∼2‰ variation in 44Ca/40Ca). A thorough assessment and understanding of such isotopic variations in peridotites provides important constraints on the evolution and compositon of the Earth's mantle. In order to better understand the Ca and Fe isotopic variations in terrestrial silicate rocks, we report Ca isotopic compositions in a set of peridotitic xenoliths from North China Craton (NCC), which have been studied for Fe isotopes. These NCC peridotites have large Ca and Fe isotopic variations, with δ44/40Ca ranging from -0.08 to 0.92 (delta value relative to SRM915a) and δ57/54Fe (delta value relative to IRMM-014) ranging from -0.61 to 0.16, and these isotopic variations are correlated with large Mg# (100 × Mg/(Mg + Fe) molar ratio) variation, ranging from 80 to 90. Importantly, NCC Fe-rich peridotites have the lowest 44Ca/40Ca and 57Fe/54Fe ratios in all terrestrial silicate rocks. In contrast, although ureilites, mantle rocks from a now broken differentiated asteroid(s), have large Mg# variation, from 70 to 92, they have very limited δ57Fe/54Fe variation (0.03-0.21, delta value relative to IRMM-014). Our model calculations show that the coupled extremely light Ca-Fe isotopic signatures in NCC Fe-rich peridotites most likely reflect kinetic isotopic fractionation during melt-peridotite reaction on a timescale of several to 104 years. In addition, our new data and compiled literature data show a possible compositional effect on the inter-mineral Ca isotopic fractionation between co-existing clinopyroxene and orthopyroxene pairs.

Increased heat transfer to a cylindrical leading edge due to spanwise variations in the freestream velocity

NASA Technical Reports Server (NTRS)

Rigby, D. L.; Vanfossen, G. J.

1991-01-01

The present study numerically demonstrates how small spanwise variations in velocity upstream of a body can cause relatively large increases in the spanwise-averaged heat transfer to the leading edge. Vorticity introduced by spanwise variations, first decays as it drifts downstream, then amplifies in the stagnation region as a result of vortex stretching. This amplification can cause a periodic array of 3 D structures, similar to horseshoe vortices, to form. The numerical results indicate that, for the given wavelength, there is an amplitude threshold below which a structure does not form. A one-dimensional analysis, to predict the decay of vorticity in the absence of the body, in conjunction with the full numerical results indicated that the threshold is more accurately stated as minimum level of vorticity required in the leading edge region for a structure to form. It is possible, using the one-dimensional analysis, to compute an optimum wavelength in terms of the maximum vorticity reaching the leading edge region for given amplitude. A discussion is presented which relates experimentally observed trends to the trends of the present phenomena.

An hourly variation in zoo visitor interest: measurement and significance for animal welfare research.

PubMed

Davey, Gareth

2006-01-01

A methodological difficulty facing welfare research on nonhuman animals in the zoo is the large number of uncontrolled variables due to variation within and between study sites. Zoo visitors act as uncontrolled variables, with number, density, size, and behavior constantly changing. This is worrisome because previous research linked visitor variables to animal behavioral changes indicative of stress. There are implications for research design: Studies not accounting for visitors' effect on animal welfare risk confounding (visitor) variables distorting their findings. Zoos need methods to measure and minimize effects of visitor behavior and to ensure that there are no hidden variables in research models. This article identifies a previously unreported variable--hourly variation (decrease) in visitor interest--that may impinge on animal welfare and validates a methodology for measuring it. That visitor interest wanes across the course of the day has important implications for animal welfare management; visitor effects on animal welfare are likely to occur, or intensify, during the morning or in earlier visits when visitor interest is greatest. This article discusses this issue and possible solutions to reduce visitor effects on animal well-being.

Confounded winter and spring phenoclimatology on large herbivore ranges

USGS Publications Warehouse

Christianson, David; Klaver, Robert W.; Middleton, Arthur; Kauffman, Matthew

2013-01-01

Annual variation in winter severity and growing season vegetation dynamics appear to influence the demography of temperate herbivores but parsing winter from spring effects requires independent metrics of environmental conditions specific to each season. We tested for independence in annual variation amongst four common metrics used to describe winter severity and early growing season vegetation dynamics across the entire spatial distribution of elk (Cervus elaphus) in Wyoming from 1989 to 2006. Winter conditions and early growing season dynamics were correlated in a specific way. Winters with snow cover that ended early tended to be followed by early, but slow, rises in the normalized difference vegetation index (NDVI), while long winters with extended periods of snow cover were often followed by late and rapid rises in NDVI. Across the 35 elk ranges, 0.4–86.8 % of the variation in the rate of increase in NDVI’s in spring was explained by the date snow cover disappeared from SNOTEL stations. Because phenoclimatological metrics are correlated across seasons and shifting due to climate change, identifying environmental constraints on herbivore fitness, particularly migratory species, is more difficult than previously recognized.

Mapping the distribution of vesicular textures on silicic lavas using the Thermal Infrared Multispectral Scanner

NASA Technical Reports Server (NTRS)

Ondrusek, Jaime; Christensen, Philip R.; Fink, Jonathan H.

1993-01-01

To investigate the effect of vesicularity on TIMS (Thermal Infrared Multispectral Scanner) imagery independent of chemical variations, we studied a large rhyolitic flow of uniform composition but textural heterogeneity. The imagery was recalibrated so that the digital number values for a lake in the scene matched a calculated ideal spectrum for water. TIMS spectra for the lava show useful differences in coarsely and finely vesicular pumice data, particularly in TIMS bands 3 and 4. Images generated by ratioing these bands accurately map out those areas known from field studies to be coarsely vesicular pumice. These texture-related emissivity variations are probably due to the larger vesicles being relatively deeper and separated by smaller septa leaving less smooth glass available to give the characteristic emission of the lava. In studies of inaccessible lava flows (as on Mars) areas of coarsely vesicular pumice must be identified and avoided before chemical variations can be interpreted. Remotely determined distributions of vesicular and glassy textures can also be related to the volatile contents and potential hazards associated with the emplacement of silicic lava flows on Earth.

Aluminum tolerance is associated with higher MATE1 gene copy-number in maize

USDA-ARS?s Scientific Manuscript database

Genome structure variation, including copy-number (CNV) and presence/absence variation (PAV), comprise a large extent of maize genetic diversity but their effect on phenotypes remains largely unexplored. Here we describe how copy-number variation in a major aluminum (Al) tolerance locus contributes ...

Exploring local adaptation and the ocean acidification seascape - studies in the California Current Large Marine Ecosystem

NASA Astrophysics Data System (ADS)

Hofmann, G. E.; Evans, T. G.; Kelly, M. W.; Padilla-Gamiño, J. L.; Blanchette, C. A.; Washburn, L.; Chan, F.; McManus, M. A.; Menge, B. A.; Gaylord, B.; Hill, T. M.; Sanford, E.; LaVigne, M.; Rose, J. M.; Kapsenberg, L.; Dutton, J. M.

2013-07-01

The California Current Large Marine Ecosystem (CCLME), a temperate marine region dominated by episodic upwelling, is predicted to experience rapid environmental change in the future due to ocean acidification. Aragonite saturation state within the California Current System is predicted to decrease in the future, with near-permanent undersaturation conditions expected by the year 2050. Thus, the CCLME is a critical region to study due to the rapid rate of environmental change that resident organisms will experience and because of the economic and societal value of this coastal region. Recent efforts by a research consortium - the Ocean Margin Ecosystems Group for Acidification Studies (OMEGAS) - has begun to characterize a portion of the CCLME; both describing the mosaic of pH in coastal waters and examining the responses of key calcification-dependent benthic marine organisms to natural variation in pH and to changes in carbonate chemistry that are expected in the coming decades. In this review, we present the OMEGAS strategy of co-locating sensors and oceanographic observations with biological studies on benthic marine invertebrates, specifically measurements of functional traits such as calcification-related processes and genetic variation in populations that are locally adapted to conditions in a particular region of the coast. Highlighted in this contribution are (1) the OMEGAS sensor network that spans the west coast of the US from central Oregon to southern California, (2) initial findings of the carbonate chemistry amongst the OMEGAS study sites, (3) an overview of the biological data that describes the acclimatization and the adaptation capacity of key benthic marine invertebrates within the CCLME.

Infrastructure Shapes Differences in the Carbon Intensities of Chinese Cities.

PubMed

Zheng, Bo; Zhang, Qiang; Davis, Steven J; Ciais, Philippe; Hong, Chaopeng; Li, Meng; Liu, Fei; Tong, Dan; Li, Haiyan; He, Kebin

2018-05-15

The carbon intensity of economic activity, or CO 2 emissions per unit GDP, is a key indicator of the climate impacts of a given activity, business, or region. Although it is well-known that the carbon intensity of countries varies widely according to their level of economic development and dominant industries, few studies have assessed disparities in carbon intensity at the level of cities due to limited availability of data. Here, we present a detailed new inventory of emissions for 337 Chinese cities (every city in mainland China including 333 prefecture-level divisions and 4 province-level cities, Beijing, Tianjin, Shanghai, and Chongqing) in 2013, which we use to evaluate differences of carbon intensity between cities and the causes of those differences. We find that cities' average carbon intensity is 0.84 kg of CO 2 per dollar of gross domestic product (kgCO 2 per $GDP), but individual cities span a large range: from 0.09 to 7.86 kgCO 2 per $GDP (coefficient of variation of 25%). Further analysis of economic and technological drivers of variations in cities' carbon intensity reveals that the differences are largely due to disparities in cities' economic structure that can in turn be traced to past investment-led growth. These patterns suggest that "carbon lock-in" via socio-economic and infrastructural inertia may slow China's efforts to reduce emissions from activities in urban areas. Policy instruments targeted to accelerate the transition of urban economies from investment-led to consumption-led growth may thus be crucial to China meeting both its economic and climate targets.

Monitoring millimeter wave stray radiation during ECRH operation at ASDEX Upgrade

NASA Astrophysics Data System (ADS)

Schubert, M.; Honecker, F.; Monaco, F.; Schmid-Lorch, D.; Schütz, H.; Stober, J.; Wagner, D.

2012-09-01

Due to imperfection of the single path absorption, ECRH at ASDEX Upgrade (AUG) is always accompanied by stray radiation in the vacuum vessel. New ECRH scenarios with O2 and X3 heating schemes extend the operational space, but they have also the potential to increase the level of stray radiation. There are hazards for invessel components. Damage on electric cables has already been encountered. It is therefore necessary to monitor and control the ECRH with respect to the stray radiation level. At AUG a system of Sniffer antennas equipped with microwave detection diodes is installed. The system is part of the ECRH interlock circuit. We notice, however, that during plasma operation the variations of the Sniffer antenna signal are very large. In laboratory measurements we see variations of up to 20 dB in the directional sensitivity and we conclude that an interference pattern is formed inside the copper sphere of the antenna. When ECRH is in plasma operation at AUG, the plasma is acting as a phase and mode mixer for the millimeter waves and thus the interference pattern inside the sphere changes with the characteristic time of the plasma dynamics. In order to overcome the difficulty of a calibrated measurement of the average stray radiation level, we installed bolometer and pyroelectric detectors, which intrinsically average over interference structures due to their large active area. The bolometer provides a robust calibration but with moderate temporal resolution. The pyroelectric detector provides high sensitivity and a good temporal resolution, but it raises issues of possible signal drifts in long pulses.

Stratospheric O3 changes during 2001-2010: the small role of solar flux variations in a CTM

NASA Astrophysics Data System (ADS)

Dhomse, S. S.; Chipperfield, M. P.; Feng, W.; Ball, W. T.; Unruh, Y. C.; Haigh, J. D.; Krivova, N. A.; Solanki, S. K.; Smith, A. K.

2013-05-01

Solar spectral fluxes (or irradiance) measured by the SOlar Radiation and Climate Experiment (SORCE) show different variability at ultraviolet (UV) wavelengths compared to other irradiance measurements and models (e.g. NRL-SSI, SATIRE-S). Some modelling studies have suggested that stratospheric/lower mesospheric O3 changes during solar cycle 23 (1996-2008) can only be reproduced if SORCE solar fluxes are used. We have used a 3-D chemical transport model (CTM), forced by meteorology from the European Centre for Medium-Range Weather Forecasts (ECMWF), to simulate middle atmospheric O3 using three different solar flux datasets (SORCE, NRL-SSI and SATIRE-S). Simulated O3 changes are compared with Microwave Limb Sounder (MLS) and Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) satellite data. Modelled O3 anomalies from all solar flux datasets show good agreement with the observations, despite the different flux variations. The off-line CTM reproduces these changes through dynamical information contained in the analyses. A notable feature during this period is a robust positive solar signal in the tropical middle stratosphere due to changes in stratospheric dynamics. Ozone changes in the lower mesosphere cannot be used to discriminate between solar flux datasets due to large uncertainties and the short time span of the observations. Overall this study suggests that, in a CTM, the UV variations detected by SORCE are not necessary to reproduce observed stratospheric O3 changes during 2001-2010.

Stratospheric O3 changes during 2001-2010: the small role of solar flux variations in a chemical transport model

NASA Astrophysics Data System (ADS)

Dhomse, S. S.; Chipperfield, M. P.; Feng, W.; Ball, W. T.; Unruh, Y. C.; Haigh, J. D.; Krivova, N. A.; Solanki, S. K.; Smith, A. K.

2013-10-01

Solar spectral fluxes (or irradiance) measured by the SOlar Radiation and Climate Experiment (SORCE) show different variability at ultraviolet (UV) wavelengths compared to other irradiance measurements and models (e.g. NRL-SSI, SATIRE-S). Some modelling studies have suggested that stratospheric/lower mesospheric O3 changes during solar cycle 23 (1996-2008) can only be reproduced if SORCE solar fluxes are used. We have used a 3-D chemical transport model (CTM), forced by meteorology from the European Centre for Medium-Range Weather Forecasts (ECMWF), to simulate middle atmospheric O3 using three different solar flux data sets (SORCE, NRL-SSI and SATIRE-S). Simulated O3 changes are compared with Microwave Limb Sounder (MLS) and Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) satellite data. Modelled O3 anomalies from all solar flux data sets show good agreement with the observations, despite the different flux variations. The off-line CTM reproduces these changes through dynamical information contained in the analyses. A notable feature during this period is a robust positive solar signal in the tropical middle stratosphere, which is due to realistic dynamical changes in our simulations. Ozone changes in the lower mesosphere cannot be used to discriminate between solar flux data sets due to large uncertainties and the short time span of the observations. Overall this study suggests that, in a CTM, the UV variations detected by SORCE are not necessary to reproduce observed stratospheric O3 changes during 2001-2010.

TEC Variations Over Korean Peninsula During Magnetic Storm

NASA Astrophysics Data System (ADS)

Ji, E.-Y.; Choi, B.-K.; Kim, K.-H.; Lee, D.-H.; Cho, J.-H.; Chung, J.-K.; Park, J.-U.

2008-03-01

By analyzing the observations from a number of ground- and space-based instruments, including ionosonde, magnetometers, and ACE interplanetary data, we examine the response of the ionospheric TEC over Korea during 2003 magnetic storms. We found that the variation of vertical TEC is correlated with the southward turning of the interplanetary magnetic field B_z. It is suggested that the electric fields produced by the dynamo process in the high-latitude region and the prompt penetration in the low-latitude region are responsible for TEC increases. During the June 16 event, dayside TEC values increase more than 15%. And the ionospheric F2-layer peak height (hmF2) was ˜300km higher and the vertical E×B drift (estimated from ground-based magnetometer equatorial electrojet delta H) showed downward drift, which may be due to the ionospheric disturbance dynamo electric field produced by the large amount of energy dissipation into high-latitude regions. In contr! ast, during November 20 event, the nightside TEC increases may be due to the prompt penetration westward electric field. The ionospheric F2-layer peak height was below 200km and the vertical E×B drift showed downward drift. Also, a strong correlation is observed between enhanced vertical TEC and enhanced interplanetary electric field. It is shown that, even though TEC increases are caused by the different processes, the electric field disturbances in the ionosphere play an important role in the variation of TEC over Korea.

New Constraints on a Complex Relation between Globular Cluster Colors and Environment

NASA Astrophysics Data System (ADS)

Powalka, Mathieu; Puzia, Thomas H.; Lançon, Ariane; Peng, Eric W.; Schönebeck, Frederik; Alamo-Martínez, Karla; Ángel, Simón; Blakeslee, John P.; Côté, Patrick; Cuillandre, Jean-Charles; Duc, Pierre-Alain; Durrell, Patrick; Ferrarese, Laura; Grebel, Eva K.; Guhathakurta, Puragra; Gwyn, S. D. J.; Kuntschner, Harald; Lim, Sungsoon; Liu, Chengze; Lyubenova, Mariya; Mihos, J. Christopher; Muñoz, Roberto P.; Ordenes-Briceño, Yasna; Roediger, Joel; Sánchez-Janssen, Rubén; Spengler, Chelsea; Toloba, Elisa; Zhang, Hongxin

2016-09-01

We present an analysis of high-quality photometry for globular clusters (GCs) in the Virgo cluster core region, based on data from the Next Generation Virgo Cluster Survey (NGVS) pilot field, and in the Milky Way (MW), based on Very Large Telescope/X-Shooter spectrophotometry. We find significant discrepancies in color-color diagrams between sub-samples from different environments, confirming that the environment has a strong influence on the integrated colors of GCs. GC color distributions along a single color are not sufficient to capture the differences we observe in color-color space. While the average photometric colors become bluer with increasing radial distance to the cD galaxy M87, we also find a relation between the environment and the slope and intercept of the color-color relations. A denser environment seems to produce a larger dynamic range in certain color indices. We argue that these results are not due solely to differential extinction, Initial Mass Function variations, calibration uncertainties, or overall age/metallicity variations. We therefore suggest that the relation between the environment and GC colors is, at least in part, due to chemical abundance variations, which affect stellar spectra and stellar evolution tracks. Our results demonstrate that stellar population diagnostics derived from model predictions which are calibrated on one particular sample of GCs may not be appropriate for all extragalactic GCs. These results advocate a more complex model of the assembly history of GC systems in massive galaxies that goes beyond the simple bimodality found in previous decades.

Tree height–diameter allometry across the United States

PubMed Central

Hulshof, Catherine M; Swenson, Nathan G; Weiser, Michael D

2015-01-01

The relationship between tree height and diameter is fundamental in determining community and ecosystem structure as well as estimates of biomass and carbon storage. Yet our understanding of how tree allometry relates to climate and whole organismal function is limited. We used the Forest Inventory and Analysis National Program database to determine height–diameter allometries of 2,976,937 individuals of 293 tree species across the United States. The shape of the allometric relationship was determined by comparing linear and nonlinear functional forms. Mixed-effects models were used to test for allometric differences due to climate and floristic (between angiosperms and gymnosperms) and functional groups (leaf habit and shade tolerance). Tree allometry significantly differed across the United States largely because of climate. Temperature, and to some extent precipitation, in part explained tree allometric variation. The magnitude of allometric variation due to climate, however, had a phylogenetic signal. Specifically, angiosperm allometry was more sensitive to differences in temperature compared to gymnosperms. Most notably, angiosperm height was more negatively influenced by increasing temperature variability, whereas gymnosperm height was negatively influenced by decreasing precipitation and increasing altitude. There was little evidence to suggest that shade tolerance influenced tree allometry except for very shade-intolerant trees which were taller for any given diameter. Tree allometry is plastic rather than fixed and scaling parameters vary around predicted central tendencies. This allometric variation provides insight into life-history strategies, phylogenetic history, and environmental limitations at biogeographical scales. PMID:25859325

Tree height-diameter allometry across the United States.

PubMed

Hulshof, Catherine M; Swenson, Nathan G; Weiser, Michael D

2015-03-01

The relationship between tree height and diameter is fundamental in determining community and ecosystem structure as well as estimates of biomass and carbon storage. Yet our understanding of how tree allometry relates to climate and whole organismal function is limited. We used the Forest Inventory and Analysis National Program database to determine height-diameter allometries of 2,976,937 individuals of 293 tree species across the United States. The shape of the allometric relationship was determined by comparing linear and nonlinear functional forms. Mixed-effects models were used to test for allometric differences due to climate and floristic (between angiosperms and gymnosperms) and functional groups (leaf habit and shade tolerance). Tree allometry significantly differed across the United States largely because of climate. Temperature, and to some extent precipitation, in part explained tree allometric variation. The magnitude of allometric variation due to climate, however, had a phylogenetic signal. Specifically, angiosperm allometry was more sensitive to differences in temperature compared to gymnosperms. Most notably, angiosperm height was more negatively influenced by increasing temperature variability, whereas gymnosperm height was negatively influenced by decreasing precipitation and increasing altitude. There was little evidence to suggest that shade tolerance influenced tree allometry except for very shade-intolerant trees which were taller for any given diameter. Tree allometry is plastic rather than fixed and scaling parameters vary around predicted central tendencies. This allometric variation provides insight into life-history strategies, phylogenetic history, and environmental limitations at biogeographical scales.

Infiltration capacity in a tropical montane landscape: Disentangling the effects of land-use intensity and biophysical gradients

NASA Astrophysics Data System (ADS)

Looker, N. T.; Kolka, R.; Colin, P. O.; Asbjornsen, H.

2017-12-01

The alteration of soil field-saturated hydraulic conductivity (Ksat) is a primary mechanism by which land-use/cover changes influence catchment hydrologic behavior. While previous studies have demonstrated declines in Ksat with forest cover loss, we lack a comprehensive framework for predicting the response of Ksat to increases in forest cover or to changes in land-use intensity (rather than changes in cover type per se). Variation in Ksat due to biophysical factors (e.g., climate or topography) may further obscure the effects of land cover or intensity. We assessed differences in Ksat between four cover types representative of a catchment in central Veracruz, Mexico (maize, pasture, shade coffee, and secondary cloud forest) and evaluated the factors that control variation across sites within cover types. In 38 sites distributed from 1200 m to 2900 m above sea level, we estimated Ksat at a depth of 25 cm using a Guelph permeameter. Ksat was significantly lower in soils under pasture and maize than in those under woody cover types (i.e., shade coffee and secondary forest), largely due to differences in horizon thickness. Variation in Ksat within woody cover types was associated with vegetation productivity and seasonality as inferred using remotely sensed vegetation indices. Unexpectedly, coffee and forest sites exhibited contrasting relationships between Ksat and vegetation indices. We propose possible mechanisms for these relationships and explore their implications for the regionalization of Ksat in catchment modeling applications.

Copy Number Variation in Fungi and Its Implications for Wine Yeast Genetic Diversity and Adaptation

PubMed Central

Steenwyk, Jacob L.; Rokas, Antonis

2018-01-01

In recent years, copy number (CN) variation has emerged as a new and significant source of genetic polymorphisms contributing to the phenotypic diversity of populations. CN variants are defined as genetic loci that, due to duplication and deletion, vary in their number of copies across individuals in a population. CN variants range in size from 50 base pairs to whole chromosomes, can influence gene activity, and are associated with a wide range of phenotypes in diverse organisms, including the budding yeast Saccharomyces cerevisiae. In this review, we introduce CN variation, discuss the genetic and molecular mechanisms implicated in its generation, how they can contribute to genetic and phenotypic diversity in fungal populations, and consider how CN variants may influence wine yeast adaptation in fermentation-related processes. In particular, we focus on reviewing recent work investigating the contribution of changes in CN of fermentation-related genes in yeast wine strains and offer notable illustrations of such changes, including the high levels of CN variation among the CUP genes, which confer resistance to copper, a metal with fungicidal properties, and the preferential deletion and duplication of the MAL1 and MAL3 loci, respectively, which are responsible for metabolizing maltose and sucrose. Based on the available data, we propose that CN variation is a substantial dimension of yeast genetic diversity that occurs largely independent of single nucleotide polymorphisms. As such, CN variation harbors considerable potential for understanding and manipulating yeast strains in the wine fermentation environment and beyond. PMID:29520259

Experimental observation of the influence of furnace temperature profile on convection and segregation in the vertical Bridgman crystal growth technique

NASA Technical Reports Server (NTRS)

Neugebauer, G. T.; Wilcox, William R.

1992-01-01

Azulene-doped naphthalene was directionally solidified during the vertical Bridgman-Stockbarger technique. Doping homogeneity and convection were determined as a function of the temperature profile in the furnace and the freezing rate. Convection velocities were two orders of magnitude lower when the temperature increased with height. Rarely was the convection pattern axisymmetric, even though the temperature varied less than 0.1 K around the circumference of the growth ampoule. Correspondingly the cross sectional variation in azulene concentration tended to be asymmetric, especially when the temperature increased with height. This cross sectional variation changed dramatically along the ingot, reflecting changes in convection presumably due to the decreasing height of the melt. Although there was large scatter and irreproducibility in the cross sectional variation in doping, this variation tended to be least when the growth rate was low and the convection was vigorous. It is expected that compositional variations would also be small at high growth rates with weak convection and flat interfaces, although this was not investigated in the present experiments. Neither rotation of the ampoule nor deliberate introduction of thermal asymmetries during solidification had a significant influence on cross sectional variations in doping. It is predicted that slow directional solidification under microgravity conditions could produce greater inhomogeneities than on Earth. Combined use of microgravity and magnetic fields would be required to achieve homogeneity when it is necessary to freeze slowly in order to avoid constitutional supercooling.

Variations of the relative abundances of He, (C,N,O) and Fe-group nuclei in solar cosmic rays and their relationship to solar particle acceleration

NASA Technical Reports Server (NTRS)

Bertsch, D. L.; Biswas, S.; Fichtel, C. E.; Pellerin, C. J.; Reames, D. V.

1973-01-01

Measurements of the flux of helium nuclei in the 24 January 1971 event and of helium and (C,N,O) nuclei in the 1 September 1971 event are combined with previous measurements to obtain the relative abundances of helium, (C,N,O), and Fe-group nuclei in these events. These data are then summarized together with previously reported results to show that, even when the same detector system using a dE/dx plus range technique is used, differences in the He/(C,N,O) value in the same energy/nucleon interval are observed in solar cosmic ray events. Further, when the He/(C,N,O) value is lower the He/(Fe-group nuclei) value is also systematically lower in these large events. When solar particle acceleration theory is analyzed, it is seen that the results suggest that, for large events, Coulomb energy loss probably does not play a major role in determining solar particle composition at higher energies (10 MeV). The variations in multicharged nuclei composition are more likely due to partial ionization during the acceleration phase.

The Effect of Viewing Eccentricity on Enumeration

PubMed Central

Palomares, Melanie; Smith, Paul R.; Pitts, Carole Holley; Carter, Breana M.

2011-01-01

Visual acuity and contrast sensitivity progressively diminish with increasing viewing eccentricity. Here we evaluated how visual enumeration is affected by visual eccentricity, and whether subitizing capacity, the accurate enumeration of a small number (∼3) of items, decreases with more eccentric viewing. Participants enumerated gratings whose (1) stimulus size was constant across eccentricity, and (2) whose stimulus size scaled by a cortical magnification factor across eccentricity. While we found that enumeration accuracy and precision decreased with increasing eccentricity, cortical magnification scaling of size neutralized the deleterious effects of increasing eccentricity. We found that size scaling did not affect subitizing capacities, which were nearly constant across all eccentricities. We also found that size scaling modulated the variation coefficients, a normalized metric of enumeration precision, defined as the standard deviation divided by the mean response. Our results show that the inaccuracy and imprecision associated with increasing viewing eccentricity is due to limitations in spatial resolution. Moreover, our results also support the notion that the precise number system is restricted to small numerosities (represented by the subitizing limit), while the approximate number system extends across both small and large numerosities (indexed by variation coefficients) at large eccentricities. PMID:21695212

The effect of viewing eccentricity on enumeration.

PubMed

Palomares, Melanie; Smith, Paul R; Pitts, Carole Holley; Carter, Breana M

2011-01-01

Visual acuity and contrast sensitivity progressively diminish with increasing viewing eccentricity. Here we evaluated how visual enumeration is affected by visual eccentricity, and whether subitizing capacity, the accurate enumeration of a small number (∼3) of items, decreases with more eccentric viewing. Participants enumerated gratings whose (1) stimulus size was constant across eccentricity, and (2) whose stimulus size scaled by a cortical magnification factor across eccentricity. While we found that enumeration accuracy and precision decreased with increasing eccentricity, cortical magnification scaling of size neutralized the deleterious effects of increasing eccentricity. We found that size scaling did not affect subitizing capacities, which were nearly constant across all eccentricities. We also found that size scaling modulated the variation coefficients, a normalized metric of enumeration precision, defined as the standard deviation divided by the mean response. Our results show that the inaccuracy and imprecision associated with increasing viewing eccentricity is due to limitations in spatial resolution. Moreover, our results also support the notion that the precise number system is restricted to small numerosities (represented by the subitizing limit), while the approximate number system extends across both small and large numerosities (indexed by variation coefficients) at large eccentricities.

Mercury bioaccumulation increases with latitude in a coastal marine fish (Atlantic silverside, Menidia menidia)

PubMed Central

Baumann, Zofia; Mason, Robert P.; Conover, David O.; Balcom, Prentiss; Chen, Celia Y.; Buckman, Kate L.; Fisher, Nicholas S.; Baumann, Hannes

2016-01-01

Human exposure to the neurotoxic methylmercury (MeHg) occurs primarily via the consumption of marine fish, but the processes underlying large-scale spatial variations in fish MeHg concentrations [MeHg], which influence human exposure, are not sufficiently understood. We used the Atlantic silverside (Menidia menidia), an extensively studied model species and important forage fish, to examine latitudinal patterns in total Hg [Hg] and [MeHg]. Both [Hg] and [MeHg] significantly increased with latitude (0.014 and 0.048 μg MeHg g−1 dw per degree of latitude in juveniles and adults, respectively). Four known latitudinal trends in silverside traits help explain these patterns: latitudinal increase in MeHg assimilation efficiency, latitudinal decrease in MeHg efflux, latitudinal increase in weight loss due to longer and more severe winters, and latitudinal increase in food consumption as an adaptation to decreasing length of the growing season. Given the absence of a latitudinal pattern in particulate MeHg, a diet proxy for zooplanktivorous fish, we conclude that large-scale spatial variation in growth is the primary control of Hg bioaccumulation in this and potentially other fish species. PMID:28701819

Extremely small polarization beam splitter based on a multimode interference coupler with a silicon hybrid plasmonic waveguide.

PubMed

Guan, Xiaowei; Wu, Hao; Shi, Yaocheng; Dai, Daoxin

2014-01-15

A novel polarization beam splitter (PBS) with an extremely small footprint is proposed based on a multimode interference (MMI) coupler with a silicon hybrid plasmonic waveguide. The MMI section, covered with a metal strip partially, is designed to achieve mirror imaging for TE polarization. On the other hand, for TM polarization, there is almost no MMI effect since the higher-order TM modes are hardly excited due to the hybrid plasmonic effect. With this design, the whole PBS including the 1.1 μm long MMI section as well as the output section has a footprint as small as ∼1.8 μm×2.5 μm. Besides, the fabrication process is simple since the waveguide dimension is relatively large (e.g., the input/output waveguides widths w ≥300 nm and the MMI width w(MMI)=800 nm). Numerical simulations show that the designed PBS has a broad band of ∼80 nm for an ER >10 dB as well as a large fabrication tolerance to allow a silicon core width variation of -30 nm<Δw<50 nm and a metal strip width variation of -200 nm<Δw(m)<0.

A Comparison of Aircraft and Ground-Based Measurements at Mauna Loa Observatory, Hawaii, During GTE PEM-West and MLOPEX 2

NASA Technical Reports Server (NTRS)

Atlas, E.; Ridley, B.; Walega, J.; Greenberg, J.; Kok, G.; Staffelbach, T.; Schauffler, S.; Lind, J.; Huebler, G.; Norton, R.

1996-01-01

During October 19-20, 1991, one flight of the NASA Global Tropospheric Experiment (GTE) Pacific Exploratory Mission (PEM-West A) mission was conducted near Hawaii as an intercomparison with ground-based measurements of the Mauna Loa Observatory Photochemistry Experiment (MLOPEX 2) and the NOAA Climate Modeling and Diagnostics Laboratory (CMDL). Ozone, reactive nitrogen species, peroxides, hydrocarbons, and halogenated hydrocarbons were measured by investigators aboard the DC-8 aircraft and at the ground site. Lidar cross sections of ozone revealed a complex air mass structure near the island of Hawaii which was evidenced by large variation in some trace gas mixing ratios. This variation limited the time and spatial scales for direct measurement intercomparisons. Where differences occurred between measurements in the same air masses, the intercomparison suggested that biases for some trace gases was due to different calibration scales or, in some cases, instrumental or sampling biases. Relatively large uncertainties were associated with those trace gases present in the low parts per trillion by volume range. Trace gas correlations were used to expand the scope of the intercomparison to identify consistent trends between the different data sets.

Variations in rotation rate and polar motion of a non-hydrostatic Titan

NASA Astrophysics Data System (ADS)

Coyette, Alexis; Baland, Rose-Marie; Van Hoolst, Tim

2018-06-01

Observation of the rotation of synchronously rotating satellites can help to probe their interior. Previous studies mostly assume that these large icy satellites are in hydrostatic equilibrium, although several measurements indicate that they deviate from such a state. Here we investigate the effect of non-hydrostatic equilibrium and of flow in the subsurface ocean on the rotation of Titan. We consider the variations in rotation rate and the polar motion due to (1) the gravitational force exerted by Saturn at orbital period and (2) exchanges of angular momentum between the seasonally varying atmosphere and the solid surface. The deviation of the mass distribution from hydrostaticity can significantly increase the diurnal libration and decrease the amplitude of the seasonal libration. The effect of the non-hydrostatic mass distribution is less important for polar motion, which is more sensitive to flow in the subsurface ocean. By including a large spectrum of atmospheric perturbations, the smaller than synchronous rotation rate measured by Cassini in the 2004-2009 period (Meriggiola et al., 2016) could be explained by the atmospheric forcing. If our interpretation is correct, we predict a larger than synchronous rotation rate in the 2009-2014 period.

Estimating variations in global surface water storage

NASA Astrophysics Data System (ADS)

Lettenmaier, D. P.

2016-12-01

Arguably, the most dramatic advances attributable to remote sensing in the hydrologic sciences have involved the extension of knowledge about processes and state variables from the scale of field experiments to regions, continents, and the entire Earth. However, despite the availability of information about total terrestrial water storage over large areas provided by the Gravity Recovery and Climate Experiment (GRACE) mission, we still have remarkably little knowledge of the magnitude of freshwater stored at and near the land surface, and its temporal scales of variation. This is especially true with respect to freshwater storage in natural lakes and manmade reservoirs. Estimates of the amount of water that could be stored in artificial reservoirs are in the neighborhood of 15% of the mean annual runoff from the continents or around 7-8000 km3. However, while global reservoir storage was increasing through about 1980 due to filling of new reservoirs constructed in the second half of the 20th century, it is not even known whether aggregate usable reservoir storage is increasing or decreasing, due to sedimentation effects. With the advent of satellite altimeters (mostly intended to measure ocean surface topography and or the surface elevation of glaciers and ice sheets), along with improved methods for estimating space-time variations in the extent of surface waters, new opportunities have arisen to piece together estimates of storage variations of fractions approaching one-half of the global surface water storage, for periods approaching two decades in some cases. Although this ability is nascent, it offers encouragement that, with the launch of the planned Surface Water and Ocean Topography (SWOT) satellite mission in 2020, which has as a specific objective the measurement of surface water variations, climate-scale understanding of this source of variability in Earth's surface water balance may be at hand. I discuss specific examples of the technology and resulting data sets, including successes and failures.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steiner, A. W.; Gandolfi, S.; Fattoyev, F. J.

Here, we perform a systematic assessment of models for the equation of state (EOS) of dense matter in the context of recent neutron star mass and radius measurements to obtain a broad picture of the structure of neutron stars. We demonstrate that currently available neutron star mass and radius measurements provide strong constraints on moments of inertia, tidal deformabilities, and crust thicknesses. Moreover, a measurement of the moment of inertia of PSR J0737-3039A with a 10% error, without any other information from observations, will constrain the EOS over a range of densities to within 50% 60%. We find tidal deformabilitiesmore » between 0.6 and 6 1036 g cm 2 s 2 (to 95% confidence) for M = 1.4 M ⊙ , and any measurement which constrains this range will provide an important constraint on dense matter. The crustal fraction of the moment of inertia can be as large as 10% for M = 1.4 M ⊙ permitting crusts to have a large enough moment of inertia reservoir to explain glitches in the Vela pulsar even with a large amount of superfluid entrainment. Finally, due to the uncertainty in the equation of state, there is at least a 40% variation in the thickness of the crust for a fixed mass and radius, which implies that future simulations of the cooling of a neutron star crust which has been heated by accretion will need to take this variation into account.« less

Holographic Interferometry--A Laboratory Experiment.

ERIC Educational Resources Information Center

de Frutos, A. M.; de la Rosa, M. I.

1988-01-01

Explains the problem of analyzing a phase object, separating the contribution due to thickness variations and that due to refractive index variations. Discusses the design of an interferometer and some applications. Provides diagrams and pictures of holographic images. (YP)

Extreme-event geoelectric hazard maps

NASA Astrophysics Data System (ADS)

Love, J. J.; Bedrosian, P.

2017-12-01

Maps covering about half of the continental United States are presented of geoelectric field amplitude that will be exceeded, on average, once per century in response to extreme-intensity geomagnetic disturbance. These maps are constructed using an empirical parameterization of induction: convolving latitude-dependent statistical maps of extreme-value geomagnetic disturbance, obtained from decades of 1-minute magnetic observatory data, with local estimates of Earth-surface impedance, obtained at discrete geographic sites from magnetotelluric surveys. Geoelectric amplitudes are estimated for geomagnetic waveforms having 240-s (and 1200-s) sinusoidal period and amplitudes over 10 minutes (1-hr) that exceed a once-per-century threshold. As a result of the combination of geographic differences in geomagnetic variation and Earth-surface impedance, once-per-century geoelectric amplitudes span more than two orders of magnitude and are a highly granular function of location. Specifically: for north-south 240-s induction, once-per-century geoelectric amplitudes across large parts of the United States have a median value of 0.34 V/km; for east-west variation, they have a median value of 0.23 V/km. In Northern Minnesota, amplitudes exceed 14.00 V/km for north-south geomagnetic variation (23.34 V/km for east-west variation), while just over 100 km away, amplitudes are only 0.08 V/km (0.02 V/km). At some sites in the Northern Central United States, once-per-century geoelectric amplitudes exceed the 2 V/km realized in Quebec during the March 1989 storm. These hazard maps are incomplete over large parts of the United States, including major population centers in the southern United States, due to a lack of publically available impedance data.

Reducing variation in a rabbit vaccine safety study with particular emphasis on housing conditions and handling.

PubMed

Verwer, Cynthia M; van der Ark, Arno; van Amerongen, Geert; van den Bos, Ruud; Hendriksen, Coenraad F M

2009-04-01

This paper describes the results of a study of the effects of modified housing conditions, conditioning and habituation on humans using a rabbit model for monitoring whole-cell pertussis vaccine (pWCV)-induced adverse effects. The study has been performed with reference to previous vaccine safety studies of pWCV in rabbits in which results were difficult to interpret due to the large variation in experimental outcome, especially in the key parameter deep-body temperature (T(b)). Certain stressful laboratory conditions, as well as procedures involving humans, e.g. blood sampling, inoculation and cage-cleaning, were hypothesized to cause this large variation. The results of this study show that under modified housing conditions rabbits have normal circadian body temperatures. This allowed discrimination of pWCV-induced adverse effects in which handled rabbits tended to show a dose-related increase in temperature after inoculation with little variance, whereas non-handled rabbits did not. Effects of experimental and routine procedures on body temperature were significantly reduced under modified conditions and were within the normal T(b) range. Handled animals reacted less strongly and with less variance to experimental procedures, such as blood sampling, injection and cage-cleaning, than non-handled rabbits. Overall, handling had a positive effect on the behaviour of the animals. Data show that the housing modifications have provided a more robust model for monitoring pWCV adverse effects. Furthermore, conditioning and habituation of rabbits to humans reduce the variation in experimental outcome, which might allow for a reduction in the number of animals used. In addition, this also reduces distress and thus contributes to refining this animal model.

KVN observations reveal multiple γ-ray emission regions in 3C 84?

NASA Astrophysics Data System (ADS)

Hodgson, Jeffrey A.; Rani, Bindu; Lee, Sang-Sung; Algaba, Juan Carlos; Kino, Motoki; Trippe, Sascha; Park, Jong-Ho; Zhao, Guang-Yao; Byun, Do-Young; Kang, Sincheol; Kim, Jae-Young; Kim, Jeong-Sook; Kim, Soon-Wook; Miyazaki, Atsushi; Wajima, Kiyoaki; Oh, Junghwan; Kim, Dae-won; Gurwell, Mark

2018-03-01

3C 84 (NGC 1275) is a well-studied misaligned sctive galactic nucleus (AGN), which has been active in γ-rays since at least 2008. We have monitored the source at four wavelengths (14, 7, 3, and 2 mm) using the Korean VLBI network (KVN) since 2013 as part of the interferometric monitoring of γ-ray bright AGN (iMOGABA) programme, and it exhibits bright radio emission both near the central SMBH and in a slowly moving feature located to the south known as C3. Other facilities have also detected these short-term variations above a slowly rising trend at shorter wavelengths, such as in γ-ray and 1-mm total intensity light curves. We find that the variations in the γ-rays and 1-mm total intensity light curves are correlated, with the γ-ray leading and lagging the radio emission. Analysis of the 2-mm KVN data shows that both the γ-rays and 1-mm total intensity short-term variations are better correlated with the SMBH region than C3, likely placing the short-term variations in C1. We interpret the emission as being due to the random alignment of spatially separated emission regions. We place the slowly rising trend in C3, consistent with previous results. Spectral analysis of the γ-ray data shows that the γ-ray flaring is inconsistent with blazar-like γ-ray emission. Additionally, we report that since mid-2015, a large mm-wave radio flare has been occurring in C3, with a large γ-ray flare coincident with the onset of this flare at all radio wavelengths.

Rapid-run ionosonde observations of traveling ionospheric disturbances in the auroral ionosphere

NASA Astrophysics Data System (ADS)

Kozlovsky, Alexander; Turunen, Tauno; Ulich, Thomas

2013-08-01

2007, the Sodankylä Geophysical Observatory routinely performs vertical ionosphere soundings once per minute, using a frequency-modulated continuous-wave chirp at the rate of 500 kHz/s from 500 kHz to 16 MHz. We used these data to study traveling ionospheric disturbances (TIDs) during 10-16 local time. The observations were made between April 2007 and June 2012, mostly during low solar activity. The TIDs were studied in five bands of periods corresponding to the following: infrasonic (acoustic) waves and the buoyancy cutoff (periods from 5 to 10 min); small-scale gravity waves (GWs; 10-15 min); medium-scale (MS; 15-30 min) GWs; medium-large scale (MS-LS; 30-60 min) GWs; and large-scale (LS; 60-120 min) GWs. Relative contribution (with respect to LS TIDs) of the short-period (5-15 min) and MS (15-30 min) TIDs shows minima in winter and maxima in summer. These annual variations anticorrelate with variations of true height, namely, the largest relative amplitudes occur in summer, when TIDs were observed at minimal heights. We suggest that the summer increase of shorter-period TIDs is due to lowering reflection to the height where the Brunt-Väisälä period is smaller and, hence, shorter-period gravity waves exist. The summer maxima were most prominent during the 3 years of minimal solar activity (2008-2010). In 2011, when solar activity increased, the annual variation seems less prominent. Annual variations of the longer-period (30-120 min) TIDs are essentially less significant. For all TIDs, no obvious dependences on the AE and Ap indices of magnetic activity were found.

Weather-forced variations of Central and East Pacific ENSO events

NASA Astrophysics Data System (ADS)

Alexander, M. A.; Newman, M.; Shin, S.

2010-12-01

It has been suggested that a possible outcome of climate change is an increase in the occurrence of “Modoki” or central Pacific El Nino events relative to canonical eastern Pacific El Nino events, and that this change may already be occurring. Such a determination, however, is complicated by possible natural variations of the two types of events. How large a change in the relative occurrence can be expected from purely internal variability? To explore this question, a “patterns-based” red noise null hypothesis is constructed from 40 years of observed seasonally-averaged SST, 20 deg C thermocline depth, and surface zonal wind stress anomalies. Patterns-based (or multivariate) red noise differs from “local” (or univariate) red noise since it allows for non-local advective processes; for example, weather noise driving surface wind stress in one location to produce an ocean response in a different location. It is shown that natural random variations of the central Pacific to east Pacific El Nino occurrence ratio are large enough that they could account for all past observed differences as well as all differences found in the SRESA1B runs of all AR4 climate models. Additionally, the correlation between Nino3 and Nino4 SST indices over 30-yr periods can range between 0.7 and 0.9 simply due to such variations in noise, with apparent multidecadal “trends” during which the value increases or decreases. Further analysis shows the different spatial patterns of “noise” (i.e., random weather forcing) that can lead to the development of central vs. eastern Pacific ENSO events or various combinations thereof.

Determining rates of chemical weathering in soils - Solute transport versus profile evolution

USGS Publications Warehouse

Stonestrom, David A.; White, A.F.; Akstin, K.C.

1998-01-01

SiO2 fluxes associated with contemporary solute transport in three deeply weathered granitoid profiles are compared to bulk SiO2 losses that have occurred during regolith development. Climates at the three profiles range from Mediterranean to humid to tropical. Due to shallow impeding alluvial layers at two of the profiles, and seasonally uniform rainfall at the third, temporal variations in hydraulic and chemical state variables are largely attenuated below depths of 1-2 m. This allows current SiO2 fluxes below the zone of seasonal variations to be estimated from pore-water concentrations and average hydraulic flux densities. Mean-annual SiO2 concentrations were 0.1-1.5 mM. Hydraulic conductivities for the investigated range of soil-moisture saturations ranged from 10-6 m s-1. Estimated hydraulic flux densities for quasi-steady portions of the profiles varied from 6 x 10-9 to 14 x 10-9 m s-1 based on Darcy's law and field measurements of moisture saturations and pressure heads. Corresponding fluid-residence times in the profiles ranged from 10 to 44 years. Total SiO2 losses, based on chemical and volumetric changes in the respective profiles, ranged from 19 to 110 kmoles SiO2 m-2 of land surface as a result of 0.2-0.4 Ma of chemical weathering. Extrapolation of contemporary solute fluxes to comparable time periods reproduced these SiO2 losses to about an order of magnitude. Despite the large range and non-linearity of measured hydraulic conductivities, solute transport rates in weathering regoliths can be estimated from characterization of hydrologic conditions at sufficiently large depths. The agreement suggests that current weathering rates are representative of long-term average weathering rates in the regoliths.SiO2 fluxes associated with contemporary solute transport in three deeply weathered granitoid profiles are compared to bulk SiO2 losses during regolith development. Due to shallow impeding alluvial layers at two of the profiles, and seasonally uniform rainfall at the third, temporal variations in hydraulic and chemical state variables are largely attenuated below depths of 1-2 m. Hydraulic conductivities for the investigated range of soil-moisture saturations of 10-6 m/s-1. Estimated hydraulic flux densities for quasi-steady portions of the profiles varied from 6??10-9 to 14??10-9 m/s based on Darcy's law and field measurements of moisture saturations and pressure heads.

Critical review of on-board capacity estimation techniques for lithium-ion batteries in electric and hybrid electric vehicles

NASA Astrophysics Data System (ADS)

Farmann, Alexander; Waag, Wladislaw; Marongiu, Andrea; Sauer, Dirk Uwe

2015-05-01

This work provides an overview of available methods and algorithms for on-board capacity estimation of lithium-ion batteries. An accurate state estimation for battery management systems in electric vehicles and hybrid electric vehicles is becoming more essential due to the increasing attention paid to safety and lifetime issues. Different approaches for the estimation of State-of-Charge, State-of-Health and State-of-Function are discussed and analyzed by many authors and researchers in the past. On-board estimation of capacity in large lithium-ion battery packs is definitely one of the most crucial challenges of battery monitoring in the aforementioned vehicles. This is mostly due to high dynamic operation and conditions far from those used in laboratory environments as well as the large variation in aging behavior of each cell in the battery pack. Accurate capacity estimation allows an accurate driving range prediction and accurate calculation of a battery's maximum energy storage capability in a vehicle. At the same time it acts as an indicator for battery State-of-Health and Remaining Useful Lifetime estimation.

Application of digital image correlation for long-distance bridge deflection measurement

NASA Astrophysics Data System (ADS)

Tian, Long; Pan, Bing; Cai, Youfa; Liang, Hui; Zhao, Yan

2013-06-01

Due to its advantages of non-contact, full-field and high-resolution measurement, digital image correlation (DIC) method has gained wide acceptance and found numerous applications in the field of experimental mechanics. In this paper, the application of DIC for real-time long-distance bridge deflection detection in outdoor environments is studied. Bridge deflection measurement using DIC in outdoor environments is more challenging than regular DIC measurements performed under laboratory conditions. First, much more image noise due to variations in ambient light will be presented in the images recorded in outdoor environments. Second, how to select the target area becomes a key factor because long-distance imaging results in a large field of view of the test object. Finally, the image acquisition speed of the camera must be high enough (larger than 100 fps) to capture the real-time dynamic motion of a bridge. In this work, the above challenging issues are addressed and several improvements were made to DIC method. The applicability was demonstrated by real experiments. Experimental results indicate that the DIC method has great potentials in motion measurement in various large building structures.

Spatially resolved mapping of electrical conductivity across individual domain (grain) boundaries in graphene.

PubMed

Clark, Kendal W; Zhang, X-G; Vlassiouk, Ivan V; He, Guowei; Feenstra, Randall M; Li, An-Ping

2013-09-24

All large-scale graphene films contain extended topological defects dividing graphene into domains or grains. Here, we spatially map electronic transport near specific domain and grain boundaries in both epitaxial graphene grown on SiC and CVD graphene on Cu subsequently transferred to a SiO2 substrate, with one-to-one correspondence to boundary structures. Boundaries coinciding with the substrate step on SiC exhibit a significant potential barrier for electron transport of epitaxial graphene due to the reduced charge transfer from the substrate near the step edge. Moreover, monolayer-bilayer boundaries exhibit a high resistance that can change depending on the height of substrate step coinciding at the boundary. In CVD graphene, the resistance of a grain boundary changes with the width of the disordered transition region between adjacent grains. A quantitative modeling of boundary resistance reveals the increased electron Fermi wave vector within the boundary region, possibly due to boundary induced charge density variation. Understanding how resistance change with domain (grain) boundary structure in graphene is a crucial first step for controlled engineering of defects in large-scale graphene films.

Spiral phyllotaxis underlies constrained variation in Anemone (Ranunculaceae) tepal arrangement.

PubMed

Kitazawa, Miho S; Fujimoto, Koichi

2018-05-01

Stabilization and variation of floral structures are indispensable for plant reproduction and evolution; however, the developmental mechanism regulating their structural robustness is largely unknown. To investigate this mechanism, we examined positional arrangement (aestivation) of excessively produced perianth organs (tepals) of six- and seven-tepaled (lobed) flowers in six Anemone species (Ranunculaceae). We found that the tepal arrangement that occurred in nature varied intraspecifically between spiral and whorled arrangements. Moreover, among the studied species, variation was commonly limited to three types, including whorls, despite five geometrically possible arrangements in six-tepaled flowers and two types among six possibilities in seven-tepaled flowers. A spiral arrangement, on the other hand, was unique to five-tepaled flowers. A spiral phyllotaxis model with stochasticity on initiating excessive primordia accounted for these limited variations in arrangement in cases when the divergence angle between preexisting primordia was less than 144°. Moreover, interspecific differences in the frequency of the observed arrangements were explained by the change of model parameters that represent meristematic growth and differential organ growth. These findings suggest that the phyllotaxis parameters are responsible for not only intraspecific stability but interspecific difference of floral structure. Decreasing arrangements from six-tepaled to seven-tepaled Anemone flowers demonstrate that the stabilization occurs as development proceeds to increase the component (organ) number, in contrast from the intuition that the variation will be larger due to increasing number of possible states (arrangements).

The reduction in circulating levels of melatonin may be associated with the development of preeclampsia.

PubMed

Zeng, K; Gao, Y; Wan, J; Tong, M; Lee, A C; Zhao, M; Chen, Q

2016-11-01

Placental dysfunction and oxidative stress contribute to the pathogenesis of preeclampsia, which is a pregnancy-specific disorder. It has been suggested that the incidence of preeclampsia has a seasonal variation. Melatonin, as a seasonal factor, has been suggested to be involved in a successful pregnancy. In this study, we investigated the association of circulating levels of melatonin with preeclampsia. Serum was collected from women with preeclampsia (n=113) and gestation-matched healthy pregnant women, and the levels of melatonin were measured. In addition, the expression of melatonin receptors was examined in preeclamptic placentae (n=27). The association of the incidence of preeclampsia and seasonal variation was also analysed from 1491 women with preeclampsia within 77 745 healthy pregnancies. The serum levels of melatonin were significantly reduced in women with preeclampsia at presentation and these reduced serum levels of melatonin were not associated with the severity or time onset of preeclampsia nor with seasonal variation. The expression of melatonin receptor, MT1 was reduced in preeclamptic placentae. The incidence of preeclampsia was did exhibit seasonal variation, but this was largely due to the increase in the incidence of mild or late-onset preeclampsia. Our results demonstrate that reduced melatonin levels are associated with the development of preeclampsia but that the circulating levels of melatonin do not appear to be subject to seasonal variation during pregnancy.

Spectral analysis of the turbulent mixing of two fluids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steinkamp, M.J.

1996-02-01

The authors describe a spectral approach to the investigation of fluid instability, generalized turbulence, and the interpenetration of fluids across an interface. The technique also applies to a single fluid with large variations in density. Departures of fluctuating velocity components from the local mean are far subsonic, but the mean Mach number can be large. Validity of the description is demonstrated by comparisons with experiments on turbulent mixing due to the late stages of Rayleigh-Taylor instability, when the dynamics become approximately self-similar in response to a constant body force. Generic forms for anisotropic spectral structure are described and used asmore » a basis for deriving spectrally integrated moment equations that can be incorporated into computer codes for scientific and engineering analyses.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, Logan C.; Ciesielski, Peter N.; Jarvis, Mark W.

Here, biomass particles can experience variable thermal conditions during fast pyrolysis due to differences in their size and morphology, and from local temperature variations within a reactor. These differences lead to increased heterogeneity of the chemical products obtained in the pyrolysis vapors and bio-oil. Here we present a simple, high-throughput method to investigate the thermal history experienced by large ensembles of particles during fast pyrolysis by imaging and quantitative image analysis. We present a correlation between the surface luminance (darkness) of the biochar particle and the highest temperature that it experienced during pyrolysis. Next, we apply this correlation to large,more » heterogeneous ensembles of char particles produced in a laminar entrained flow reactor (LEFR). The results are used to interpret the actual temperature distributions delivered by the reactor over a range of operating conditions.« less

Imaging spectroscopy links aspen genotype with below-ground processes at landscape scales

PubMed Central

Madritch, Michael D.; Kingdon, Clayton C.; Singh, Aditya; Mock, Karen E.; Lindroth, Richard L.; Townsend, Philip A.

2014-01-01

Fine-scale biodiversity is increasingly recognized as important to ecosystem-level processes. Remote sensing technologies have great potential to estimate both biodiversity and ecosystem function over large spatial scales. Here, we demonstrate the capacity of imaging spectroscopy to discriminate among genotypes of Populus tremuloides (trembling aspen), one of the most genetically diverse and widespread forest species in North America. We combine imaging spectroscopy (AVIRIS) data with genetic, phytochemical, microbial and biogeochemical data to determine how intraspecific plant genetic variation influences below-ground processes at landscape scales. We demonstrate that both canopy chemistry and below-ground processes vary over large spatial scales (continental) according to aspen genotype. Imaging spectrometer data distinguish aspen genotypes through variation in canopy spectral signature. In addition, foliar spectral variation correlates well with variation in canopy chemistry, especially condensed tannins. Variation in aspen canopy chemistry, in turn, is correlated with variation in below-ground processes. Variation in spectra also correlates well with variation in soil traits. These findings indicate that forest tree species can create spatial mosaics of ecosystem functioning across large spatial scales and that these patterns can be quantified via remote sensing techniques. Moreover, they demonstrate the utility of using optical properties as proxies for fine-scale measurements of biodiversity over large spatial scales. PMID:24733949

Synoptic climatological analyses on the seasonal transition from winter to spring in Europe also with attention to the day-to-day variability (Comparing with that in East Asia)

NASA Astrophysics Data System (ADS)

Kato, Kuranoshin; Hamaki, Tatsuya; Haga, Yuichi; Otani, Kazuo; Kato, Haruko

2016-04-01

There are many stages with rapid seasonal transitions in East Asia, greatly influenced by the considerable phase differences of seasonal cycle among the Asian monsoon subsystems, resulting in the variety of "seasonal feeling". The seasonal cycle has been an important background for generation of the many kinds of arts also in Europe around the western edge of the Eurasian Continent. Especially around Germany, there are so many music or literature works in which the "May" is treated as the special season. However, more detailed examination and its comparison with that in East Asia about the seasonal evolution from winter to spring including before May would be interesting. Deeper knowledge on the seasonal cycle would contribute greatly to the cultural understanding as mentioned above, as well as for considering the detailed response of the regional climate to the global-scale impacts such as the global warming. As such, the present study examined, based mainly on the NCEP/NCAR reanalysis data during 1971-2010, the synoptic climatological features on the seasonal transition from winter to spring in Europe also with attention to the day-to-day variability, by comparing with those in East Asia (detailed analyses were made mainly for 2000/01 - 2010/11 winters). Around the region from Germany to Turkey, the surface air temperature (TS) showed rather larger day-to-day variation (including the interannual or intraseasonal variation) throughout a year than in the Japan Islands area in East Asia. Especially from December to March (the minimum period of the climatological TS in the European side), the day-to-day variation was extremely great around Germany and its northern region (to the north of around 45N/10E). Thus, the extremely low temperature events sometimes appeared around Germany till the end of March, although the seasonal mean TS was not so considerably low. The day-to-day variation of sea level pressure (SLP) was also very large where such large amplitude of TS was found, although the extremely large day-to-day variation of SLP was found from the earlier season (October to March). It is interesting that the region where such large day-to-day amplitudes of TS and SLP were observed corresponded to the southeastern periphery zone of the Icelandic Low in the seasonal mean field. Besides, sub-monthly or about 30-day-period intraseasonal variation of the eastward intrusion of the Icelandic Low near the northwestern Europe was also clearly found in winter, as well as the short-period variation of the synoptic-scale disturbances to the southeast of the intraseasonal-scale Icelandic Low. In the seasonal mean field, relatively strong warm air advection in the lower layer was found to the southeast of the Icelandic Low due to combination of the strong westerly wind there and the cold air in the further eastern region. Such warm advection can be intermittently enhanced especially when the Icelandic Low intruded more closely to the northwestern Europe. These situations seem to result in the large day-to-day variation of TS around Germany and its northern region until the seasonal weakening of the Icelandic Low from March to April.

Persistent regional carbon dioxide anomalies driven by land use

NASA Astrophysics Data System (ADS)

Schultz, Colin

2012-04-01

Researchers have traditionally used measurements from remote locations, such as Hawaii's Mauna Loa Observatory and other isolated stations, to determine atmospheric carbon dioxide (CO2) concentrations and estimate the strengths of various carbon sources and sinks. The prevailing wisdom was that attempts to measure regional differences in CO2 over land would end up with signals that were either so small that they were undetectable or that were dominated by high-frequency variability due to atmospheric turbulence or weather. Measurements drawn from a moderately dense network of atmospheric gas composition sensors distributed across the upper midwestern United States, however, showed that large regional variations in tropospheric CO2 are readily observable. Drawing on measurements made at nine sensors spread over 400,000 square kilometers between 2007 and 2009, Miles et al. found that seasonal variations in atmospheric CO2 depend strongly on the type of ecosystem lying at the foot of each sensor tower.

The structure of cross-cultural musical diversity.

PubMed

Rzeszutek, Tom; Savage, Patrick E; Brown, Steven

2012-04-22

Human cultural traits, such as languages, musics, rituals and material objects, vary widely across cultures. However, the majority of comparative analyses of human cultural diversity focus on between-culture variation without consideration for within-culture variation. In contrast, biological approaches to genetic diversity, such as the analysis of molecular variance (AMOVA) framework, partition genetic diversity into both within- and between-population components. We attempt here for the first time to quantify both components of cultural diversity by applying the AMOVA model to music. By employing this approach with 421 traditional songs from 16 Austronesian-speaking populations, we show that the vast majority of musical variability is due to differences within populations rather than differences between. This demonstrates a striking parallel to the structure of genetic diversity in humans. A neighbour-net analysis of pairwise population musical divergence shows a large amount of reticulation, indicating the pervasive occurrence of borrowing and/or convergent evolution of musical features across populations.

Reull Valles in Approximately Natural Color

NASA Technical Reports Server (NTRS)

1995-01-01

Reull Valles, conspicuous southeast-trending fretted channel, dissects wall deposits of the large Hellas impact basin. Center of picture is at latitude 42 degrees S. longitude 258 degrees. Fretted channels are wide, flat-floored channels with steep walls, which may be runoff channels that have been modified and enlarged by mass wasting. Many nearby hills and mountains are surrounded by lobate debris aprons, which may have formed by slow creep of rock deposits aided by the presence of near-surface ice. Layering is exposed in the channel and crater walls. The color variations of the surface are very bland in this region; most of the variations seen in the enhanced-color version (PIA00153) are due to atmospheric scattering. Viking Orbiter Picture Numbers 126A08 (violet), 126A16 (green), and 126A24 (red) at 157 m/pixel resolution. Picture width is 161 km. North is 112 degrees clockwise from top.

Spin dynamics of close-in planets exhibiting large transit timing variations

NASA Astrophysics Data System (ADS)

Delisle, J.-B.; Correia, A. C. M.; Leleu, A.; Robutel, P.

2017-09-01

We study the spin evolution of close-in planets in compact multi-planetary systems. The rotation period of these planets is often assumed to be synchronous with the orbital period due to tidal dissipation. Here we show that planet-planet perturbations can drive the spin of these planets into non-synchronous or even chaotic states. In particular, we show that the transit timing variation (TTV) is a very good probe to study the spin dynamics, since both are dominated by the perturbations of the mean longitude of the planet. We apply our model to KOI-227 b and Kepler-88 b, which are both observed undergoing strong TTVs. We also perform numerical simulations of the spin evolution of these two planets. We show that for KOI-227 b non-synchronous rotation is possible, while for Kepler-88 b the rotation can be chaotic.

Simulations of the general circulation of the Martian atmosphere. II - Seasonal pressure variations

NASA Technical Reports Server (NTRS)

Pollack, James B.; Haberle, Robert M.; Murphy, James R.; Schaeffer, James; Lee, Hilda

1993-01-01

The CO2 seasonal cycle of the Martian atmosphere and surface is simulated with a hybrid energy balance model that incorporates dynamical and radiation information from a large number of general circulation model runs. This information includes: heating due to atmospheric heat advection, the seasonally varying ratio of the surface pressure at the two Viking landing sites to the globally averaged pressure, the rate of CO2 condensation in the atmosphere, and solar heating of the atmosphere and surface. The predictions of the energy balance model are compared with the seasonal pressure variations measured at the two Viking landing sites and the springtime retreat of the seasonal polar cap boundaries. The following quantities are found to have a strong influence on the seasonal pressures at the Viking landing sites: albedo of the seasonal CO2 ice deposits, emissivity of this deposit, atmospheric heat advection, and the pressure ratio.

The structure of cross-cultural musical diversity

PubMed Central

Rzeszutek, Tom; Savage, Patrick E.; Brown, Steven

2012-01-01

Human cultural traits, such as languages, musics, rituals and material objects, vary widely across cultures. However, the majority of comparative analyses of human cultural diversity focus on between-culture variation without consideration for within-culture variation. In contrast, biological approaches to genetic diversity, such as the analysis of molecular variance (AMOVA) framework, partition genetic diversity into both within- and between-population components. We attempt here for the first time to quantify both components of cultural diversity by applying the AMOVA model to music. By employing this approach with 421 traditional songs from 16 Austronesian-speaking populations, we show that the vast majority of musical variability is due to differences within populations rather than differences between. This demonstrates a striking parallel to the structure of genetic diversity in humans. A neighbour-net analysis of pairwise population musical divergence shows a large amount of reticulation, indicating the pervasive occurrence of borrowing and/or convergent evolution of musical features across populations. PMID:22072606

Large local lattice expansion in graphene adlayers grown on copper

NASA Astrophysics Data System (ADS)

Chen, Chaoyu; Avila, José; Arezki, Hakim; Nguyen, Van Luan; Shen, Jiahong; Mucha-Kruczyński, Marcin; Yao, Fei; Boutchich, Mohamed; Chen, Yue; Lee, Young Hee; Asensio, Maria C.

2018-05-01

Variations of the lattice parameter can significantly change the properties of a material, and, in particular, its electronic behaviour. In the case of graphene, however, variations of the lattice constant with respect to graphite have been limited to less than 2.5% due to its well-established high in-plane stiffness. Here, through systematic electronic and lattice structure studies, we report regions where the lattice constant of graphene monolayers grown on copper by chemical vapour deposition increases up to 7.5% of its relaxed value. Density functional theory calculations confirm that this expanded phase is energetically metastable and driven by the enhanced interaction between the substrate and the graphene adlayer. We also prove that this phase possesses distinctive chemical and electronic properties. The inherent phase complexity of graphene grown on copper foils revealed in this study may inspire the investigation of possible metastable phases in other seemingly simple heterostructure systems.

Fewer clouds in the Mediterranean: consistency of observations and climate simulations

PubMed Central

Sanchez-Lorenzo, Arturo; Enriquez-Alonso, Aaron; Calbó, Josep; González, Josep-Abel; Wild, Martin; Folini, Doris; Norris, Joel R.; Vicente-Serrano, Sergio M.

2017-01-01

Clouds play a major role in the climate system, but large uncertainties remain about their decadal variations. Here we report a widespread decrease in cloud cover since the 1970 s over the Mediterranean region, in particular during the 1970 s–1980 s, especially in the central and eastern areas and during springtime. Confidence in these findings is high due to the good agreement between the interannual variations of cloud cover provided by surface observations and several satellite-derived and reanalysis products, although some discrepancies exist in their trends. Climate model simulations of the historical experiment from the Coupled Model Intercomparison Project Phase 5 (CMIP5) also exhibit a decrease in cloud cover over the Mediterranean since the 1970 s, in agreement with surface observations, although the rate of decrease is slightly lower. The observed northward expansion of the Hadley cell is discussed as a possible cause of detected trends. PMID:28148960

Fractal based modelling and analysis of electromyography (EMG) to identify subtle actions.

PubMed

Arjunan, Sridhar P; Kumar, Dinesh K

2007-01-01

The paper reports the use of fractal theory and fractal dimension to study the non-linear properties of surface electromyogram (sEMG) and to use these properties to classify subtle hand actions. The paper reports identifying a new feature of the fractal dimension, the bias that has been found to be useful in modelling the muscle activity and of sEMG. Experimental results demonstrate that the feature set consisting of bias values and fractal dimension of the recordings is suitable for classification of sEMG against the different hand gestures. The scatter plots demonstrate the presence of simple relationships of these features against the four hand gestures. The results indicate that there is small inter-experimental variation but large inter-subject variation. This may be due to differences in the size and shape of muscles for different subjects. The possible applications of this research include use in developing prosthetic hands, controlling machines and computers.

The Light-time Effect in the Eclipsing Binaries with Early-type Components U CrB and RW Tau

NASA Astrophysics Data System (ADS)

Khaliullina, A. I.

2018-04-01

A detailed study of the orbital-period variations of the Algol-type eclipsing binaries with earlyspectral- type primary components U CrB and RW Tau has been performed. The period variations in both systems can be described as a superposition of secular and cyclic variations of the period. A secular period increase at a rate of 2.58d × 10-7/year is observed for U CrB, which can be explained if there is a uniform flow of matter from the lower-mass to the higher-mass component, with the total angular momentum conserved. RW Tau features a secular period decrease at a rate of -8.6d × 10-7/year; this could be due to a loss of angular momentum by the binary due to magnetic braking. The cyclic orbital-period variations of U CrB and RWTau can be explained by the motion of the eclipsing binary systems along their long-period orbits. In U CrB, this implies that the eclipsing binary moves with a period of 91.3 years around a third body with mass M 3 > 1.13 M ⊙; in RW Tau, the period of the motion around the third body is 66.6 years, and the mass of the third body is M 3 > 1.24 M ⊙. It also cannot be ruled out that the variations are due to the magnetic cycles of the late-type secondaries. The residual period variations could be a superposition of variations due to non-stationary ejection of matter and effects due to magnetic cycles.

Observations and Analysis of Extended Tail Toward Red in the Diffuse Interstellar Bands of Herschel 36

NASA Astrophysics Data System (ADS)

Oka, Takeshi; Welty, Daniel E.; Johnson, Sean; York, Donald G.; Hobbs, Lew M.; Dahlstrom, Julie

2013-06-01

In the studies of the Diffuse Interstellar Bands (DIBs), the sightline toward Herschel 36 near the center of the HII region Messier 8 is unique. It shows spectra of CH^+ and CH in the first excited level indicating the presence of a cloud with high radiative temperature. The heating is most likely due to far infrared emission from the adjacent intense infrared source Her 36 SE at a distance of 0.25" from Her 36. The effect of the high radiative temperature on some DIBs is spectacular. It produces on a normally symmetric bell-shape line a very prominent Extended Tail toward Red (ETR) on prototypical DIBs λ 5780.5, λ 5797.1, and λ 6613 while other DIBs λ 5849.8, λ 6196.0, and λ 6379.3 are little affected. We interpret this as indicating that the carriers of the former 3 DIBs that are seriously affected by the radiation are polar molecules and the pronounced ETRs are the result of the decrease of rotational constant B (3 - 5 %) upon electronic excitation. High J rotational levels are pumped radiatively and with the negative (B' - B) produces the ETR. We have developed a model calculation of rotational distribution taking into account of both radiative and collisional processes. In view of the complexity of the problem linear molecules are considered. 7 parameters enter into the calculation but we find the fractional variation of B and the radiative temperature T_r are the most decisive. Although molecules with a general shape is beyond the scope of this work, we conclude that the 3 DIBs which show the pronounced ETRs are due to polar molecules and the requirement of high variation of B indicates that the molecules are not that large perhaps composed of 3-6 heavy atoms. The 3 DIBs that do not show the pronounced ETRs are likely due to non-polar molecules or large polar molecules with small fractional variation of B. Goto, M., Stecklum, B., Linz, H., Feldt, M., Henning, Th., Pascucci, I., and Usuda, T. 2006, ApJ, 649 299. Oka, T., Welty, D. E., Johnson, S., York, D. G., Dahlstrom, J., and Hobbs, L. M. 2013, ApJ, submitted

Hydromechanical coupling in fractured rock masses: mechanisms and processes of selected case studies

NASA Astrophysics Data System (ADS)

Zangerl, Christian

2015-04-01

Hydromechanical (HM) coupling in fractured rock play an important role when events including dam failures, landslides, surface subsidences due to water withdrawal or drainage, injection-induced earthquakes and others are analysed. Generally, hydromechanical coupling occurs when a rock mass contain interconnected pores and fractures which are filled with water and pore/fracture pressures evolves. In the on hand changes in the fluid pressure can lead to stress changes, deformations and failures of the rock mass. In the other hand rock mass stress changes and deformations can alter the hydraulic properties and fluid pressures of the rock mass. Herein well documented case studies focussing on surface subsidence due to water withdrawal, reversible deformations of large-scale valley flanks and failure as well as deformation processes of deep-seated rock slides in fractured rock masses are presented. Due to pore pressure variations HM coupling can lead to predominantly reversible rock mass deformations. Such processes can be considered by the theory of poroelasticity. Surface subsidence reaching magnitudes of few centimetres and are caused by water drainage into deep tunnels are phenomenas which can be assigned to processes of poroelasticity. Recently, particular focus was given on large tunnelling projects to monitor and predict surface subsidence in fractured rock mass in oder to avoid damage of surface structures such as dams of large reservoirs. It was found that surface subsidence due to tunnel drainage can adversely effect infrastructure when pore pressure drawdown is sufficiently large and spatially extended and differential displacements which can be amplified due to topographical effects e.g. valley closure are occurring. Reversible surface deformations were also ascertained on large mountain slopes and summits with the help of precise deformation measurements i.e. permanent GPS or episodic levelling/tacheometric methods. These reversible deformations are often in the range of millimetres to a very few centimetres and can be linked to annual groundwater fluctuations. Due to pore pressure variations HM coupling can influence seepage forces and effective stresses in the rock mass. Effective stress changes can adversely affect the stability and deformation behaviour of deep-seated rock slides by influencing the shear strength or the time dependent (viscous) material behaviour of the basal shear zone. The shear strength of active shear zones is often reasonably well described by Coulomb's law. In Coulomb's law the operative normal stresses to the shear surface/zone are effective stresses and hence pore pressures which should be taken into account reduces the shear strength. According to the time dependent material behaviour a few effective stress based viscous models exists which are able to consider pore pressures. For slowly moving rock slides HM coupling could be highly relevant when low-permeability clayey-silty shear zones (fault gouges) are existing. An important parameters therefore is the hydraulic diffusivity, which is controlled by the permeability and fluid-pore compressibility of the shear zone, and by fluid viscosity. Thus time dependent pore pressure diffusion in the shear zone can either control the stability condition or the viscous behaviour (creep) of the rock slide. Numerous cases studies show that HM coupling can effect deformability, shear strength and time dependent behaviour of fractured rock masses. A process-based consideration can be important to avoid unexpected impacts on infrastructures and to understand complex rock mass as well rock slide behaviour.

Large-Eddy Simulation Sensitivities to Variations of Configuration and Forcing Parameters in Canonical Boundary-Layer Flows for Wind Energy Applications

DOE PAGES

Mirocha, Jeffrey D.; Churchfield, Matthew J.; Munoz-Esparza, Domingo; ...

2017-08-28

Here, the sensitivities of idealized Large-Eddy Simulations (LES) to variations of model configuration and forcing parameters on quantities of interest to wind power applications are examined. Simulated wind speed, turbulent fluxes, spectra and cospectra are assessed in relation to variations of two physical factors, geostrophic wind speed and surface roughness length, and several model configuration choices, including mesh size and grid aspect ratio, turbulence model, and numerical discretization schemes, in three different code bases. Two case studies representing nearly steady neutral and convective atmospheric boundary layer (ABL) flow conditions over nearly flat and homogeneous terrain were used to force andmore » assess idealized LES, using periodic lateral boundary conditions. Comparison with fast-response velocity measurements at five heights within the lowest 50 m indicates that most model configurations performed similarly overall, with differences between observed and predicted wind speed generally smaller than measurement variability. Simulations of convective conditions produced turbulence quantities and spectra that matched the observations well, while those of neutral simulations produced good predictions of stress, but smaller than observed magnitudes of turbulence kinetic energy, likely due to tower wakes influencing the measurements. While sensitivities to model configuration choices and variability in forcing can be considerable, idealized LES are shown to reliably reproduce quantities of interest to wind energy applications within the lower ABL during quasi-ideal, nearly steady neutral and convective conditions over nearly flat and homogeneous terrain.« less

Origin and diversification of winged bean (Psophocarpus tetragonolobus (L.) DC.), a multipurpose underutilized legume.

PubMed

Yang, Shuyi; Grall, Aurélie; Chapman, Mark A

2018-05-01

For many crops, research into the origin and partitioning of genetic variation is limited and this can slow or prevent crop improvement programs. Many of these underutilized crops have traits that could be of benefit in a changing climate due to stress tolerance or nutritional properties. Winged bean (Psophocarpus tetragonolobus (L.) DC.) is one such crop. All parts of the plant can be eaten, from the roots to the seeds, and is high in protein as well as other micronutrients. The goal of our study was to identify the wild progenitor and analyze the partitioning of genetic variation in the crop. We used molecular phylogenetic analyses (cpDNA and nuclear ITS sequencing) to resolve relationships between all species in the genus, and population genetics (utilizing microsatellites) to identify genetic clusters of winged bean accessions and compare this to geography. We find that winged bean is genetically distinct from all other members of the genus. We also provide support for four groups of species in the genus, largely, but not completely, corresponding to the results of previous morphological analyses. Within winged bean, population genetic analysis using 10 polymorphic microsatellite markers suggests four genetic groups; however, there is little correspondence between the genetic variation and the geography of the accessions. The true wild progenitor of winged bean remains unknown (or is extinct). There has likely been large-scale cross-breeding, trade, and transport of winged bean and/or multiple origins of the crop. © 2018 Botanical Society of America.

Estimating wetland methane emissions from the northern high latitudes from 1990 to 2009 using artificial neural networks

NASA Astrophysics Data System (ADS)

Zhu, Xudong; Zhuang, Qianlai; Qin, Zhangcai; Glagolev, Mikhail; Song, Lulu

2013-04-01

Methane (CH4) emissions from wetland ecosystems in nothern high latitudes provide a potentially positive feedback to global climate warming. Large uncertainties still remain in estimating wetland CH4 emisions at regional scales. Here we develop a statistical model of CH4 emissions using an artificial neural network (ANN) approach and field observations of CH4 fluxes. Six explanatory variables (air temperature, precipitation, water table depth, soil organic carbon, soil total porosity, and soil pH) are included in the development of ANN models, which are then extrapolated to the northern high latitudes to estimate monthly CH4 emissions from 1990 to 2009. We estimate that the annual wetland CH4 source from the northern high latitudes (north of 45°N) is 48.7 Tg CH4 yr-1 (1 Tg = 1012 g) with an uncertainty range of 44.0 53.7 Tg CH4 yr-1. The estimated wetland CH4 emissions show a large spatial variability over the northern high latitudes, due to variations in hydrology, climate, and soil conditions. Significant interannual and seasonal variations of wetland CH4 emissions exist in the past 2 decades, and the emissions in this period are most sensitive to variations in water table position. To improve future assessment of wetland CH4 dynamics in this region, research priorities should be directed to better characterizing hydrological processes of wetlands, including temporal dynamics of water table position and spatial dynamics of wetland areas.

Effect of waveforms of inspired gas tension on the respiratory oscillations of carotid body discharge.

PubMed

Kumar, P; Nye, P C; Torrance, R W

1991-07-01

The responses of carotid body chemoreceptor discharge to repeated ramps (20- to 60-s forcing cycle durations) of inspired gas tensions were studied in spontaneously breathing and in artificially ventilated pentobarbitone-anesthetized cats. In all animals the mean intensity of chemoreceptor discharge followed the frequency of the forcing cycle, and superimposed on this were oscillations at the frequency of ventilation (breath-by-breath oscillations). The amplitude of the breath-by-breath oscillations in discharge was often large, and it waxed and waned with the forcing cycle. It was greatest when the mean level of discharge was falling and smallest near the peak of mean discharge. No qualitative differences were observed between PO2-alone forcing in constant normocapnia and PCO2-alone forcing in constant hypoxia. The variation in the amplitudes of breath-by-breath oscillations was shown to be due primarily to variations in the amplitudes of the downslope component of the discharge oscillation. Variations in the upslope component of individual oscillations were small. The factors responsible for the breath-by-breath oscillations are discussed, and it is concluded that the shape of the waveform of arterial gas tensions that stimulate the peripheral chemoreceptors departs markedly from that of a line joining end-tidal gas tensions. This causes breath-by-breath oscillations of discharge to be very large after an "off" stimulus. Reflex studies involving the forcing of respiratory gases should therefore include consideration of these effects.

Large-Eddy Simulation Sensitivities to Variations of Configuration and Forcing Parameters in Canonical Boundary-Layer Flows for Wind Energy Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mirocha, Jeffrey D.; Churchfield, Matthew J.; Munoz-Esparza, Domingo

Here, the sensitivities of idealized Large-Eddy Simulations (LES) to variations of model configuration and forcing parameters on quantities of interest to wind power applications are examined. Simulated wind speed, turbulent fluxes, spectra and cospectra are assessed in relation to variations of two physical factors, geostrophic wind speed and surface roughness length, and several model configuration choices, including mesh size and grid aspect ratio, turbulence model, and numerical discretization schemes, in three different code bases. Two case studies representing nearly steady neutral and convective atmospheric boundary layer (ABL) flow conditions over nearly flat and homogeneous terrain were used to force andmore » assess idealized LES, using periodic lateral boundary conditions. Comparison with fast-response velocity measurements at five heights within the lowest 50 m indicates that most model configurations performed similarly overall, with differences between observed and predicted wind speed generally smaller than measurement variability. Simulations of convective conditions produced turbulence quantities and spectra that matched the observations well, while those of neutral simulations produced good predictions of stress, but smaller than observed magnitudes of turbulence kinetic energy, likely due to tower wakes influencing the measurements. While sensitivities to model configuration choices and variability in forcing can be considerable, idealized LES are shown to reliably reproduce quantities of interest to wind energy applications within the lower ABL during quasi-ideal, nearly steady neutral and convective conditions over nearly flat and homogeneous terrain.« less

Analysis of the climate variability on Lake Nasser evaporation based on the Bowen ratio energy budget method.

PubMed

Elsawwaf, Mohamed; Willems, Patrick

2012-04-01

Variations in lake evaporation have a significant impact on the energy and water budgets of lakes. Understanding these variations and the role of climate is important for water resources management as well as predicting future changes in lake hydrology as a result of climate change. This study presents a comprehensive, 10-year analysis of seasonal, intraseasonal, and interannual variations in lake evaporation for Lake Nasser in South Egypt. Meteorological and lake temperature measurements were collected from an instrumented platform (Raft floating weather station) at 2 km upstream ofthe Aswan High Dam. In addition to that, radiation measurements at three locations on the lake: Allaqi, Abusembel and Arqeen (respectively at 75, 280 and 350 km upstream of the Aswan High Dam) are used. The data were analyzed over 14-day periods from 1995 to 2004 to provide bi-weekly energy budget estimates of evaporation rate. The mean evaporation rate for lake Nasser over the study period was 5.88 mm day(-1), with a coefficient of variation of 63%. Considerable variability in evaporation rates was found on a wide range of timescales, with seasonal changes having the highest coefficient of variation (32%), followed by the intraseasonal (28%) and interannual timescales (11.6%; for summer means). Intraseasonal changes in evaporation were primarily associated with synoptic weather variations, with high evaporation events tending to occur during incursions of cold, dry air (due, in part, to the thermal lag between air and lake temperatures). Seasonal variations in evaporation were largely driven by temperature and net energy advection, but are out-of-phase with changes in wind speed. On interannual timescales, changes in summer evaporation rates were strongly associated with changes in net energy advection and showed only moderate connections to variations in temperature or humidity.

LAMP: the long-term accretion monitoring programme of T Tauri stars in Chamaeleon I

NASA Astrophysics Data System (ADS)

Costigan, G.; Scholz, A.; Stelzer, B.; Ray, T.; Vink, J. S.; Mohanty, S.

2012-12-01

We present the results of a variability study of accreting young stellar objects in the Chameleon I star-forming region, based on ˜300 high-resolution optical spectra from the Fibre Large Area Multi-Element Spectrograph (FLAMES) at the European Southern Observatory (ESO) Very Large Telescope (VLT). 25 objects with spectral types from G2-M5.75 were observed 12 times over the course of 15 months. Using the emission lines Hα (6562.81 Å) and Ca II (8662.1 Å) as accretion indicators, we found 10 accreting and 15 non-accreting objects. We derived accretion rates for all accretors in the sample using the Hα equivalent width, Hα 10 per cent width and Ca II (8662.1 Å) equivalent width. We found that the Hα equivalent widths of accretors varied by ˜7-100 Å over the 15-month period. This corresponds to a mean amplitude of variations in the derived accretion rate of ˜0.37 dex. The amplitudes of variations in the derived accretion rate from Ca II equivalent width were ˜0.83 dex and those from Hα 10 per cent width were ˜1.11 dex. Based on the large amplitudes of variations in accretion rate derived from the Hα 10 per cent width with respect to the other diagnostics, we do not consider it to be a reliable accretion rate estimator. Assuming the variations in Hα and Ca II equivalent width accretion rates to be closer to the true value, these suggest that the spread that was found around the accretion rate to stellar-mass relation is not due to the variability of individual objects on time-scales of weeks to ˜1 year. From these variations, we can also infer that the accretion rates are stable within <0.37 dex over time-scales of less than 15 months. A major portion of the accretion variability was found to occur over periods shorter than the shortest time-scales in our observations, 8-25 days, which are comparable with the rotation periods of these young stellar objects. This could be an indication that what we are probing is spatial structure in the accretion flows and it also suggests that observations on time-scales of ˜a couple of weeks are sufficient to limit the total extent of accretion-rate variations in typical young stars. No episodic accretion was observed: all 10 accretors accreted continuously for the entire period of observations and, though they may have undetected low accretion rates, the non-accretors never showed any large changes in their emission that would imply a jump in accretion rate.

Seasonal Water Storage Variations as Impacted by Water Abstractions: Comparing the Output of a Global Hydrological Model with GRACE and GPS Observations

NASA Astrophysics Data System (ADS)

Döll, Petra; Fritsche, Mathias; Eicker, Annette; Müller Schmied, Hannes

2014-11-01

Better quantification of continental water storage variations is expected to improve our understanding of water flows, including evapotranspiration, runoff and river discharge as well as human water abstractions. For the first time, total water storage (TWS) on the land area of the globe as computed by the global water model WaterGAP (Water Global Assessment and Prognosis) was compared to both gravity recovery and climate experiment (GRACE) and global positioning system (GPS) observations. The GRACE satellites sense the effect of TWS on the dynamic gravity field of the Earth. GPS reference points are displaced due to crustal deformation caused by time-varying TWS. Unfortunately, the worldwide coverage of the GPS tracking network is irregular, while GRACE provides global coverage albeit with low spatial resolution. Detrended TWS time series were analyzed by determining scaling factors for mean annual amplitude ( f GRACE) and time series of monthly TWS ( f GPS). Both GRACE and GPS indicate that WaterGAP underestimates seasonal variations of TWS on most of the land area of the globe. In addition, seasonal maximum TWS occurs 1 month earlier according to WaterGAP than according to GRACE on most land areas. While WaterGAP TWS is sensitive to the applied climate input data, none of the two data sets result in a clearly better fit to the observations. Due to the low number of GPS sites, GPS observations are less useful for validating global hydrological models than GRACE observations, but they serve to support the validity of GRACE TWS as observational target for hydrological modeling. For unknown reasons, WaterGAP appears to fit better to GPS than to GRACE. Both GPS and GRACE data, however, are rather uncertain due to a number of reasons, in particular in dry regions. It is not possible to benefit from either GPS or GRACE observations to monitor and quantify human water abstractions if only detrended (seasonal) TWS variations are considered. Regarding GRACE, this is mainly caused by the attenuation of the TWS differences between water abstraction variants due to the filtering required for GRACE TWS. Regarding GPS, station density is too low. Only if water abstractions lead to long-term changes in TWS by depletion or restoration of water storage in groundwater or large surface water bodies, GRACE may be used to support the quantification of human water abstractions.

A large-scale study of the ultrawideband microwave dielectric properties of normal breast tissue obtained from reduction surgeries.

PubMed

Lazebnik, Mariya; McCartney, Leah; Popovic, Dijana; Watkins, Cynthia B; Lindstrom, Mary J; Harter, Josephine; Sewall, Sarah; Magliocco, Anthony; Booske, John H; Okoniewski, Michal; Hagness, Susan C

2007-05-21

The efficacy of emerging microwave breast cancer detection and treatment techniques will depend, in part, on the dielectric properties of normal breast tissue. However, knowledge of these properties at microwave frequencies has been limited due to gaps and discrepancies in previously reported small-scale studies. To address these issues, we experimentally characterized the wideband microwave-frequency dielectric properties of a large number of normal breast tissue samples obtained from breast reduction surgeries at the University of Wisconsin and University of Calgary hospitals. The dielectric spectroscopy measurements were conducted from 0.5 to 20 GHz using a precision open-ended coaxial probe. The tissue composition within the probe's sensing region was quantified in terms of percentages of adipose, fibroconnective and glandular tissues. We fit a one-pole Cole-Cole model to the complex permittivity data set obtained for each sample and determined median Cole-Cole parameters for three groups of normal breast tissues, categorized by adipose tissue content (0-30%, 31-84% and 85-100%). Our analysis of the dielectric properties data for 354 tissue samples reveals that there is a large variation in the dielectric properties of normal breast tissue due to substantial tissue heterogeneity. We observed no statistically significant difference between the within-patient and between-patient variability in the dielectric properties.

Midlatitude D region variations measured from broadband radio atmospherics

NASA Astrophysics Data System (ADS)

Han, Feng

The high power, broadband very low frequency (VLF, 3--30 kHz) and extremely low frequency (ELF, 3--3000 Hz) electromagnetic waves generated by lightning discharges and propagating in the Earth-ionosphere waveguide can be used to measure the average electron density profile of the lower ionosphere (D region) across the wave propagation path due to several reflections by the upper boundary (lower ionosphere) of the waveguide. This capability makes it possible to frequently and even continuously monitor the D region electron density profile variations over geographically large regions, which are measurements that are essentially impossible by other means. These guided waves, usually called atmospherics (or sferics for short), are recorded by our sensors located near Duke University. The purpose of this work is to develop and implement algorithms to derive the variations of D region electron density profile which is modeled by two parameters (one is height and another is sharpness), by comparing the recorded sferic spectra to a series of model simulated sferic spectra from using a finite difference time domain (FDTD) code. In order to understand the time scales, magnitudes and sources for the midlatitude nighttime D region variations, we analyzed the sferic data of July and August 2005, and extracted both the height and sharpness of the D region electron density profile. The heights show large temporal variations of several kilometers on some nights and the relatively stable behavior on others. Statistical calculations indicate that the hourly average heights during the two months range between 82.0 km and 87.2 km with a mean value of 84.9 km and a standard deviation of 1.1 km. We also observed spatial variations of height as large as 2.0 km over 5 degrees latitudes on some nights, and no spatial variation on others. In addition, the measured height variations exhibited close correlations with local lightning occurrence rate on some nights but no correlation with local lightning or displaced lightning on others. The nighttime profile sharpness during 2.5 hours in two different nights was calculated, and the results were compared to the equivalent sharpness derived from International Reference Ionosphere (IRI) models. Both the absolute values and variation trends in IRI models are different from those in broadband measurements. Based on sferic data similar to those for nighttime, we also measured the day-time D region electron density profile variations in July and August 2005 near Duke University. As expected, the solar radiation is the dominant but not the only determinant source for the daytime D region profile height temporal variations. The observed quiet time heights showed close correlations with solar zenith angle changes but unexpected spatial variations not linked to the solar zenith angle were also observed on some days, with 15% of days exhibiting regional differences larger than 0.5 km. During the solar flare, the induced height change was approximately proportional to the logarithm of the X-ray fluxes. During the rising and decaying phases of the solar flare, the height changes correlated more consistently with the short (wavelength 0.5--4 A), rather than the long (wavelength 1--8 A) X-ray flux changes. The daytime profile sharpness during morning, noontime and afternoon periods in three different days and for the solar zenith angle range 20 to 75 degrees was calculated. These broadband measured results were compared to narrowband VLF measurements, IRI models and Faraday rotation base IRI models (called FIRI). The estimated sharpness from all these sources was more consistent when the solar zenith angle was small than when it was large. By applying the nighttime and daytime measurement techniques, we also derived the D region variations during sunrise and sunset periods. The measurements showed that both the electron density profile height and sharpness decrease during the sunrise period while increase during the sunset period.

CCN activity and organic hygroscopicity of aerosols downwind of an urban region in central Amazonia: seasonal and diel variations and impact of anthropogenic emissions

NASA Astrophysics Data System (ADS)

Thalman, Ryan; de Sá, Suzane S.; Palm, Brett B.; Barbosa, Henrique M. J.; Pöhlker, Mira L.; Lizabeth Alexander, M.; Brito, Joel; Carbone, Samara; Castillo, Paulo; Day, Douglas A.; Kuang, Chongai; Manzi, Antonio; Ng, Nga Lee; Sedlacek, Arthur J., III; Souza, Rodrigo; Springston, Stephen; Watson, Thomas; Pöhlker, Christopher; Pöschl, Ulrich; Andreae, Meinrat O.; Artaxo, Paulo; Jimenez, Jose L.; Martin, Scot T.; Wang, Jian

2017-10-01

During the Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign, size-resolved cloud condensation nuclei (CCN) spectra were characterized at a research site (T3) 60 km downwind of the city of Manaus, Brazil, in central Amazonia for 1 year (12 March 2014 to 3 March 2015). Particle hygroscopicity (κCCN) and mixing state were derived from the size-resolved CCN spectra, and the hygroscopicity of the organic component of the aerosol (κorg) was then calculated from κCCN and concurrent chemical composition measurements. The annual average κCCN increased from 0.13 at 75 nm to 0.17 at 171 nm, and the increase was largely due to an increase in sulfate volume fraction. During both wet and dry seasons, κCCN, κorg, and particle composition under background conditions exhibited essentially no diel variations. The constant κorg of ˜ 0. 15 is consistent with the largely uniform and high O : C value (˜ 0. 8), indicating that the aerosols under background conditions are dominated by the aged regional aerosol particles consisting of highly oxygenated organic compounds. For air masses strongly influenced by urban pollution and/or local biomass burning, lower values of κorg and organic O : C atomic ratio were observed during night, due to accumulation of freshly emitted particles, dominated by primary organic aerosol (POA) with low hygroscopicity, within a shallow nocturnal boundary layer. The O : C, κorg, and κCCN increased from the early morning hours and peaked around noon, driven by the formation and aging of secondary organic aerosol (SOA) and dilution of POA emissions into a deeper boundary layer, while the development of the boundary layer, which leads to mixing with aged particles from the residual layer aloft, likely also contributed to the increases. The hygroscopicities associated with individual organic factors, derived from PMF (positive matrix factorization) analysis of AMS (aerosol mass spectrometry) spectra, were estimated through multivariable linear regression. For the SOA factors, the variation of the κ value with O : C agrees well with the linear relationship reported from earlier laboratory studies of SOA hygroscopicity. On the other hand, the variation in O : C of ambient aerosol organics is largely driven by the variation in the volume fractions of POA and SOA factors, which have very different O : C values. As POA factors have hygroscopicity values well below the linear relationship between SOA hygroscopicity and O : C, mixtures with different POA and SOA fractions exhibit a steeper slope for the increase in κorg with O : C, as observed during this and earlier field studies. This finding helps better understand and reconcile the differences in the relationships between κorg and O : C observed in laboratory and field studies, therefore providing a basis for improved parameterization in global models, especially in a tropical context.

Mobile monitoring of particle number concentration and other traffic-related air pollutants in a near-highway neighborhood over the course of a year

PubMed Central

Padró-Martínez, Luz T.; Patton, Allison P.; Trull, Jeffrey B.; Zamore, Wig; Brugge, Doug; Durant, John L.

2012-01-01

Accurate quantification of exposures to traffic-related air pollution in near-highway neighborhoods is challenging due to the high degree of spatial and temporal variation of pollutant levels. The objective of this study was to measure air pollutant levels in a near-highway urban area over a wide range of traffic and meteorological conditions using a mobile monitoring platform. The study was performed in a 2.3-km2 area in Somerville, Massachusetts (USA), near Interstate I-93, a highway that carries 150,000 vehicles per day. The mobile platform was equipped with rapid-response instruments and was driven repeatedly along a 15.4-km route on 55 days between September 2009 and August 2010. Monitoring was performed in 4–6-hour shifts in the morning, afternoon and evening on both weekdays and weekends in winter, spring, summer and fall. Measurements were made of particle number concentration (PNC; 4–3,000 nm), particle size distribution, fine particle mass (PM2.5), particle-bound polycyclic aromatic hydrocarbons (pPAH), black carbon (BC), carbon monoxide (CO), and nitrogen oxides (NO and NOx). The highest pollutant concentrations were measured within 0–50 m of I-93 with distance-decay gradients varying depending on traffic and meteorology. The most pronounced variations were observed for PNC. Annual median PNC 0–50 m from I-93 was two-fold higher compared to the background area (>1 km from I-93). In general, PNC levels were highest in winter and lowest in summer and fall, higher on weekdays and Saturdays compared to Sundays, and higher during morning rush hour compared to later in the day. Similar spatial and temporal trends were observed for NO, CO and BC, but not for PM2.5. Spatial variations in PNC distance-decay gradients were non-uniform largely due to contributions from local street traffic. Hour-to-hour, day-to-day and season-to-season variations in PNC were of the same magnitude as spatial variations. Datasets containing fine-scale temporal and spatial variation of air pollution levels near highways may help to inform exposure assessment efforts. PMID:23144586

Recommendations for genetic variation data capture in developing countries to ensure a comprehensive worldwide data collection.

PubMed

Patrinos, George P; Al Aama, Jumana; Al Aqeel, Aida; Al-Mulla, Fahd; Borg, Joseph; Devereux, Andrew; Felice, Alex E; Macrae, Finlay; Marafie, Makia J; Petersen, Michael B; Qi, Ming; Ramesar, Rajkumar S; Zlotogora, Joel; Cotton, Richard G H

2011-01-01

Developing countries have significantly contributed to the elucidation of the genetic basis of both common and rare disorders, providing an invaluable resource of cases due to large family sizes, consanguinity, and potential founder effects. Moreover, the recognized depth of genomic variation in indigenous African populations, reflecting the ancient origins of humanity on the African continent, and the effect of selection pressures on the genome, will be valuable in understanding the range of both pathological and nonpathological variations. The involvement of these populations in accurately documenting the extant genetic heterogeneity is more than essential. Developing nations are regarded as key contributors to the Human Variome Project (HVP; http://www.humanvariomeproject.org), a major effort to systematically collect mutations that contribute to or cause human disease and create a cyber infrastructure to tie databases together. However, biomedical research has not been the primary focus in these countries even though such activities are likely to produce economic and health benefits for all. Here, we propose several recommendations and guidelines to facilitate participation of developing countries in genetic variation data documentation, ensuring an accurate and comprehensive worldwide data collection. We also summarize a few well-coordinated genetic data collection initiatives that would serve as paradigms for similar projects.

Implications of Spatial Data Variations for Protected Areas Management: An Example from East Africa

NASA Astrophysics Data System (ADS)

Dowhaniuk, Nicholas; Hartter, Joel; Ryan, Sadie J.

2014-09-01

Geographic information systems and remote sensing technologies have become an important tool for visualizing conservation management and developing solutions to problems associated with conservation. When multiple organizations separately develop spatial data representations of protected areas, implicit error arises due to variation between data sets. We used boundary data produced by three conservation organizations (International Union for the Conservation of Nature, World Resource Institute, and Uganda Wildlife Authority), for seven Ugandan parks, to study variation in the size represented and the location of boundaries. We found variation in the extent of overlapping total area encompassed by the three data sources, ranging from miniscule (0.4 %) differences to quite large ones (9.0 %). To underscore how protected area boundary discrepancies may have implications to protected area management, we used a landcover classification, defining crop, shrub, forest, savanna, and grassland. The total area in the different landcover classes varied most in smaller protected areas (those less than 329 km2), with forest and cropland area estimates varying up to 65 %. The discrepancies introduced by boundary errors could, in this hypothetical case, generate erroneous findings and could have a significant impact on conservation, such as local-scale management for encroachment and larger-scale assessments of deforestation.

Nature, Nurture and Evolution of Intra-Species Variation in Mosquito Arbovirus Transmission Competence

PubMed Central

Tabachnick, Walter J.

2013-01-01

Mosquitoes vary in their competence or ability to transmit arthropod-borne viruses (arboviruses). Many arboviruses cause disease in humans and animals. Identifying the environmental and genetic causes of variation in mosquito competence for arboviruses is one of the great challenges in public health. Progress identifying genetic (nature) and environmental (nurture) factors influencing mosquito competence for arboviruses is reviewed. There is great complexity in the various traits that comprise mosquito competence. The complex interactions between environmental and genetic factors controlling these traits and the factors shaping variation in Nature are largely unknown. The norms of reaction of specific genes influencing competence, their distributions in natural populations and the effects of genetic polymorphism on phenotypic variation need to be determined. Mechanisms influencing competence are not likely due to natural selection because of the direct effects of the arbovirus on mosquito fitness. More likely the traits for mosquito competence for arboviruses are the effects of adaptations for other functions of these competence mechanisms. Determining these other functions is essential to understand the evolution and distributions of competence for arboviruses. This information is needed to assess risk from mosquito-borne disease, predict new mosquito-arbovirus systems, and provide novel strategies to mitigate mosquito-borne arbovirus transmission. PMID:23343982

Differences in protein expression among five species of stream stonefly (Plecoptera) along a latitudinal gradient in Japan.

PubMed

Gamboa, Maribet; Tsuchiya, Maria Claret; Matsumoto, Suguru; Iwata, Hisato; Watanabe, Kozo

2017-11-01

Proteome variation among natural populations along an environmental gradient may provide insights into how the biological functions of species are related to their local adaptation. We investigated protein expression in five stream stonefly species from four geographic regions along a latitudinal gradient in Japan with varying climatic conditions. The extracted proteins were separated by two-dimensional gel electrophoresis and identified by matrix-assisted laser desorption/ionization of time-of-flight (MALDI TOF/TOF), yielding 446 proteins. Low interspecies variation in the proteome profiles was observed among five species within geographical regions, presumably due to the co-occurring species sharing the environments. However, large spatial variations in protein expression were found among four geographic regions, suggesting strong regulation of protein expression in heterogeneous environments, where the spatial variations were positively correlated with water temperature. We identified 21 unique proteins expressed specifically in a geographical region and six common proteins expressed throughout all regions. In warmer regions, metabolic proteins were upregulated, whereas proteins related to cold stress, the photoperiod, and mating were downregulated. Oxygen-related and energy-production proteins were upregulated in colder regions with higher altitudes. Thus, our proteomic approach is useful for identifying and understanding important biological functions related to local adaptations by populations of stoneflies. © 2017 Wiley Periodicals, Inc.

Medical economic impact of tracheotomy patients on a hospital system.

PubMed

Altman, Kenneth W; Banoff, Karen Merl; Tong, Charles C L

2015-04-01

Tracheotomy patients are a small portion of hospitalizations, but account for disproportionately high risk and costs. There are many complex decisions that go into the care of these patients, and practice variation is expected to be compounded in a health system. This study sought to characterize the medical economic impact of tracheotomy patients on the hospital system. A retrospective review of the health system's hospital billing software was performed for 2013, and pertinent outcomes measures were tabulated. There were 829 tracheotomies performed in the health system of seven hospitals, with total costs of $128,883,865. Average length of stay was 36.74 days for principal procedures, and 43.36 days for tracheotomy as secondary procedures. Mortality was ∼ 18% overall, and re-admissions were 10.93% for primary, and 14.36% for secondary procedures. A fairly wide variation in each category among the different hospitals was observed. There are potentially many factors that impact variations of care and outcomes in patients with tracheotomy. Due to their large economic impact and risks for morbidity and mortality, a formalized care pathway is warranted. Goals of the pathway should include understanding medical decisions surrounding these complex patients, monitoring pertinent outcomes, reducing practice variation, and improving the efficiency of compassionate care.

Implications of spatial data variations for protected areas management: an example from East Africa.

PubMed

Dowhaniuk, Nicholas; Hartter, Joel; Ryan, Sadie J

2014-09-01

Geographic information systems and remote sensing technologies have become an important tool for visualizing conservation management and developing solutions to problems associated with conservation. When multiple organizations separately develop spatial data representations of protected areas, implicit error arises due to variation between data sets. We used boundary data produced by three conservation organizations (International Union for the Conservation of Nature, World Resource Institute, and Uganda Wildlife Authority), for seven Ugandan parks, to study variation in the size represented and the location of boundaries. We found variation in the extent of overlapping total area encompassed by the three data sources, ranging from miniscule (0.4 %) differences to quite large ones (9.0 %). To underscore how protected area boundary discrepancies may have implications to protected area management, we used a landcover classification, defining crop, shrub, forest, savanna, and grassland. The total area in the different landcover classes varied most in smaller protected areas (those less than 329 km(2)), with forest and cropland area estimates varying up to 65 %. The discrepancies introduced by boundary errors could, in this hypothetical case, generate erroneous findings and could have a significant impact on conservation, such as local-scale management for encroachment and larger-scale assessments of deforestation.

Variation in hunting behaviour in neighbouring chimpanzee communities in the Budongo forest, Uganda

PubMed Central

Hobaiter, Catherine; Samuni, Liran; Mullins, Caroline; Akankwasa, Walter John; Zuberbühler, Klaus

2017-01-01

Hunting and sharing of meat is seen across all chimpanzee sites, with variation in prey preferences, hunting techniques, frequencies, and success rates. Here, we compared hunting and meat-eating behaviour in two adjacent chimpanzee communities (Pan troglodytes schweinfurthii) of Budongo Forest, Uganda: the Waibira and Sonso communities. We observed consistent between-group differences in prey-species preferences and in post-hunting behaviour. Sonso chimpanzees show a strong prey preference for Guereza colobus monkeys (Colobus guereza occidentalis; 74.9% hunts), and hunt regularly (1–2 times a month) but with large year-to-year and month-to-month variation. Waibira chimpanzee prey preferences are distributed across primate and duiker species, and resemble those described in an early study of Sonso hunting. Waibira chimpanzees (which include ex-Sonso immigrants) have been observed to feed on red duiker (Cephalophus natalensis; 25%, 9/36 hunts), a species Sonso has never been recorded to feed on (18 years data, 27 years observations), despite no apparent differences in prey distribution; and show less rank-related harassment of meat possessors. We discuss the two most likely and probably interrelated explanations for the observed intergroup variation in chimpanzee hunting behaviour, that is, long-term disruption of complex group-level behaviour due to human presence and possible socially transmitted differences in prey preferences. PMID:28636646

A rodent model for the study of invariant visual object recognition

PubMed Central

Zoccolan, Davide; Oertelt, Nadja; DiCarlo, James J.; Cox, David D.

2009-01-01

The human visual system is able to recognize objects despite tremendous variation in their appearance on the retina resulting from variation in view, size, lighting, etc. This ability—known as “invariant” object recognition—is central to visual perception, yet its computational underpinnings are poorly understood. Traditionally, nonhuman primates have been the animal model-of-choice for investigating the neuronal substrates of invariant recognition, because their visual systems closely mirror our own. Meanwhile, simpler and more accessible animal models such as rodents have been largely overlooked as possible models of higher-level visual functions, because their brains are often assumed to lack advanced visual processing machinery. As a result, little is known about rodents' ability to process complex visual stimuli in the face of real-world image variation. In the present work, we show that rats possess more advanced visual abilities than previously appreciated. Specifically, we trained pigmented rats to perform a visual task that required them to recognize objects despite substantial variation in their appearance, due to changes in size, view, and lighting. Critically, rats were able to spontaneously generalize to previously unseen transformations of learned objects. These results provide the first systematic evidence for invariant object recognition in rats and argue for an increased focus on rodents as models for studying high-level visual processing. PMID:19429704

Application of Satellite Solar-Induced Chlorophyll Fluorescence to Understanding Large-Scale Variations in Vegetation Phenology and Function Over Northern High Latitude Forests

NASA Technical Reports Server (NTRS)

Jeong, Su-Jong; Schimel, David; Frankenberg, Christian; Drewry, Darren T.; Fisher, Joshua B.; Verma, Manish; Berry, Joseph A.; Lee, Jung-Eun; Joiner, Joanna

2016-01-01

This study evaluates the large-scale seasonal phenology and physiology of vegetation over northern high latitude forests (40 deg - 55 deg N) during spring and fall by using remote sensing of solar-induced chlorophyll fluorescence (SIF), normalized difference vegetation index (NDVI) and observation-based estimate of gross primary productivity (GPP) from 2009 to 2011. Based on GPP phenology estimation in GPP, the growing season determined by SIF time-series is shorter in length than the growing season length determined solely using NDVI. This is mainly due to the extended period of high NDVI values, as compared to SIF, by about 46 days (+/-11 days), indicating a large-scale seasonal decoupling of physiological activity and changes in greenness in the fall. In addition to phenological timing, mean seasonal NDVI and SIF have different responses to temperature changes throughout the growing season. We observed that both NDVI and SIF linearly increased with temperature increases throughout the spring. However, in the fall, although NDVI linearly responded to temperature increases, SIF and GPP did not linearly increase with temperature increases, implying a seasonal hysteresis of SIF and GPP in response to temperature changes across boreal ecosystems throughout their growing season. Seasonal hysteresis of vegetation at large-scales is consistent with the known phenomena that light limits boreal forest ecosystem productivity in the fall. Our results suggest that continuing measurements from satellite remote sensing of both SIF and NDVI can help to understand the differences between, and information carried by, seasonal variations vegetation structure and greenness and physiology at large-scales across the critical boreal regions.

Spatial variation in biofouling of a unionid mussel (Lampsilis siliquoidea) across the western basin of Lake Erie

USGS Publications Warehouse

Larson, James H.; Evans, Mary; Richardson, William B.; Schaeffer, Jeff; Nelson, John

2016-01-01

Invasion of North American waters by nonnative Dreissena polymorpha and D. rostriformis bugensishas resulted in declines of the Unionidae family of native North American mussels. Dreissenid mussels biofoul unionid mussels in large numbers and interfere with unionid movement, their acquisition of food, and the native mussels' ability to open and close their shells. Initial expectations for the Great Lakes included extirpation of unionids where they co-occurred with dreissenids, but recently adult and juvenile unionids have been found alive in several apparent refugia. These unionid populations may persist due to reduced dreissenid biofouling in these areas, and/or due to processes that remove biofoulers. For example locations inaccessible to dreissenid veligers may reduce biofouling and habitats with soft substrates may allow unionids to burrow and thus remove dreissenids. We deployed caged unionid mussels (Lampsilis siliquoidea) at 36 sites across the western basin of Lake Erie to assess spatial variation in biofouling and to identify other areas that might promote the persistence or recovery of native unionid mussels. Biofouling ranged from 0.03 – 26.33 g per mussel, reached a maximum in the immediate vicinity of the mouth of the Maumee River, and appeared to primarily consist of dreissenid mussels. A known mussel refugium in the vicinity of a power plant near the mouth of the Maumee actually exhibited very high biofouling rates, suggesting that low dreissenid colonization did not adequately explain unionid survival in this refugium. In contrast, the southern nearshore area of Lake Erie, near another refugium, had very low biofouling. A large stretch of the western basin appeared to have low biofouling rates and muddy substrates, raising the possibility that these open water areas could support remnant and returning populations of unionid mussels. Previous observations of unionid refugia and the occurrence of low biofouling rates in large areas of the western basin of Lake Erie raise the possibility that unionid and dreissenid coexistence may be possible here and elsewhere.

Types of hydrogeological response to large-scale explosions and earthquakes

NASA Astrophysics Data System (ADS)

Gorbunova, Ella; Vinogradov, Evgeny; Besedina, Alina; Martynov, Vasilii

2017-04-01

Hydrogeological response to anthropogenic and natural impact indicates massif properties and mode of deformation. We studied uneven-aged aquifers that had been unsealed at the Semipalatinsk testing area (Kazakhstan) and geophysical observatory "Mikhnevo" at the Moscow region (Russia). Data was collected during long-term underground water monitoring that was carried out in 1983-1989 when large-scale underground nuclear explosions were realized. Precise observations of underground water response to distant earthquakes waves passage at GPO "Mikhnevo" have been conducted since 2008. One of the goals of the study was to mark out main types of either dynamic or irreversible spatial-temporal underground water response to large-scale explosions and to compare them with those of earthquakes impact as it had been presented in different papers. As far as nobody really knows hydrogeological processes that occur at the earthquake source it's especially important to analyze experimental data of groundwater level variations that was carried close to epicenter first minutes to hours after explosions. We found that hydrogeodynamic reaction strongly depends on initial geological and hydrogeological conditions as far as on seismic impact parameters. In the near area post-dynamic variations can lead to either excess pressure dome or depression cone forming that results of aquifer drainage due to rock massif fracturing. In the far area explosion effect is comparable with the one of distant earthquake and provides dynamic water level oscillations. Precise monitoring at the "Mikhnevo" area was conducted in the platform conditions far from active faults thus we consider it as a purely calm area far from earthquake sources. Both dynamic and irreversible water level change seem to form power dependence on vertical peak ground displacement velocity due to wave passage. Further research will be aimed at transition close-to-far area to identify a criterion that determines either irreversible or elastic behavior of hydrogeological response. This work was supported by the Russian Science Foundation (project no. 16-17-00095).

Methane fluxes from the mound-building termite species of North Australian savannas

NASA Astrophysics Data System (ADS)

Jamali, H.; Livesely, S. J.; Arndt, S. K.; Dawes-Gromadzki, T.; Cook, G. D.; Hutley, L.

2009-04-01

Termites are estimated to contribute 3-19% to the global methane emissions. These estimates have large uncertainties because of the limited number of field-based studies and species studied, as well as issues of diel and seasonal variation. We measured methane fluxes from four common mound-building termite species (Microcerotermes nervosus, n=26; M. serratus, n=4; Tumulitermes pastinator, n=5; and Amitermes darwini, n=4) in tropical savannas near Darwin in the Northern Territory, Australia. Methane fluxes from replicated termite mounds were measured in the field using manual chambers with fluxes reported on a mound volume basis. Methane flux was measured in both wet and dry seasons and diel variation was investigated by measuring methane flux every 4 hours over a 24 hour period. Mound temperature was measured concurrently with flux to examine this relationship. In addition, five M. nervosus mounds removed from the field and incubated under controlled temperature conditions over a 24 hour period to remove the effect of varying temperature. During the observation campaigns, mean monthly minimum and maximum temperatures for February (wet season) were 24.7 and 30.8°C, respectively, and were 20.1 to 31.4 °C in June (dry season). Annual rainfall in 2008 for Darwin was 1970.1 mm, with a maximum of 670 mm falling in February and no rain in May and June. Methane fluxes were greatest in the wet season for all species, ranging from 265.1±101.1 (T. pastinator) to 2256.6±757.1 (M. serratus) µg CH4-C/m3/h. In the dry season, methane fluxes were at their lowest, ranging from 10.0±5.5 (T. pastinator) to 338.0±165.9 (M. serratus) µg CH4-C/m3/h. On a diel basis, methane fluxes were smallest at the coolest time of the day (~0700 hrs) and greatest at the warmest (~1400 hrs) for all species, and for both wet and dry seasons. Typical diel variation in flux from M. serratus dominated mounds ranged from 902.6±261.9 to 1392.1±408.1 µg CH4-C/m3/h in wet season and 99.6±57.4 to 556.2±254.9 µg CH4-C/m3/h in dry season. While mounds of M. nervosus had diel variations in methane fluxes in the field, no diel variation was observed when incubated under constant laboratory temperature for 24 hours. This demonstrates that diel variation was not due to the movement of termites in and out of the mounds, but was due to temperature variation. Methane flux varied significantly according to termite species and at seasonal and diel time scales which, if not accounted for, could result in large under- or over-estimation of methane emissions from termites when flux data are extrapolated to landscape scales.

First principle calculation in FeCo overlayer on GaAs substrate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jain, Vishal, E-mail: vjain045@gmail.com; Lakshmi, N.; Jain, Vivek Kumar

In this work the first principle electronic structure calculation is reported for FeCo/GaAs thin film system to investigate the effect of orientation on the electronic structural properties. A unit cell describing FeCo layers and GaAs layers is constructed for (100), (110), (111) orientation with vacuum of 30Å to reduce dimensions. It is found that although the (110) orientation is energetically more favorable than others, the magnetic moment is quite large in (100) and (111) system compared to the (110) and is due to the total DOS variation with orientation.

Glow discharge detector

DOEpatents

Koo, Jackson C.; Yu, Conrad M.

2002-01-01

A highly sensitive electronic ion cell for the measurement of trace elements in He carrier gas which involves glow discharge. A constant wave (CW) glow discharge detector which is controlled through a biased resistor, can detect the change of electron density caused by impurities in the He carrier gas by many orders of magnitude larger than that caused by direct ionization or electron capture. The glow discharge detector utilizes a floating pseudo-electrode to form a probe in or near the plasma. By using this probe, the large variation of electron density due to trace amounts of impurities can be directly measured.

Mapping of bird distributions from point count surveys

USGS Publications Warehouse

Sauer, J.R.; Pendleton, G.W.; Orsillo, Sandra; Ralph, C.J.; Sauer, J.R.; Droege, S.

1995-01-01

Maps generated from bird survey data are used for a variety of scientific purposes, but little is known about their bias and precision. We review methods for preparing maps from point count data and appropriate sampling methods for maps based on point counts. Maps based on point counts can be affected by bias associated with incomplete counts, primarily due to changes in proportion counted as a function of observer or habitat differences. Large-scale surveys also generally suffer from regional and temporal variation in sampling intensity. A simulated surface is used to demonstrate sampling principles for maps.

Predator cannibalism can intensify negative impacts on heterospecific prey.

PubMed

Takatsu, Kunio; Kishida, Osamu

2015-07-01

Although natural populations consist of individuals with different traits, and the degree of phenotypic variation varies among populations, the impact of phenotypic variation on ecological interactions has received little attention, because traditional approaches to community ecology assume homogeneity of individuals within a population. Stage structure, which is a common way of generating size and developmental variation within predator populations, can drive cannibalistic interactions, which can affect the strength of predatory effects on the predator's heterospecific prey. Studies have shown that predator cannibalism weakens predatory effects on heterospecific prey by reducing the size of the predator population and by inducing less feeding activity of noncannibal predators. We predict, however, that predator cannibalism, by promoting rapid growth of the cannibals, can also intensify predation pressure on heterospecific prey, because large predators have large resource requirements and may utilize a wider variety of prey species. To test this hypothesis, we conducted an experiment in which we created carnivorous salamander (Hynobius retardatus) populations with different stage structures by manipulating the salamander's hatch timing (i.e., populations with large or small variation in the timing of hatching), and explored the resultant impacts on the abundance, behavior, morphology, and life history of the salamander's large heterospecific prey, Rana pirica frog tadpoles. Cannibalism was rare in salamander populations having small hatch-timing variation, but was frequent in those having large hatch-timing variation. Thus, giant salamander cannibals occurred only in the latter. We clearly showed that salamander giants exerted strong predation pressure on frog tadpoles, which induced large behavioral and morphological defenses in the tadpoles and caused them to metamorphose late at large size. Hence, predator cannibalism arising from large variation in the timing of hatching can strengthen predatory effects on heterospecific prey and can have impacts on various, traits of both predator and prey. Because animals commonly broaden their diet as they grow, such negative impacts of predator cannibalism on the heterospecific prey may be common in interactions between predators and prey species of similar size.

An experimental study of large-scale vortices over a blunt-faced flat plate in pulsating flow

NASA Astrophysics Data System (ADS)

Hwang, K. S.; Sung, H. J.; Hyun, J. M.

Laboratory measurements are made of flow over a blunt flat plate of finite thickness, which is placed in a pulsating free stream, U=Uo(1+Aocos 2πfpt). Low turbulence-intensity wind tunnel experiments are conducted in the ranges of Stp<=1.23 and Ao<=0.118 at ReH=560. Pulsation is generated by means of a woofer speaker. Variations of the time-mean reattachment length xR as functions of Stp and Ao are scrutinized by using the forward-time fraction and surface pressure distributions (Cp). The shedding frequency of large-scale vortices due to pulsation is measured. Flow visualizations depict the behavior of large-scale vortices. The results for non-pulsating flows (Ao=0) are consistent with the published data. In the lower range of Ao, as Stp increases, xR attains a minimum value at a particular pulsation frequency. For large Ao, the results show complicated behaviors of xR. For Stp>=0.80, changes in xR are insignificant as Ao increases. The shedding frequency of large-scale vortices is locked-in to the pulsation frequency. A vortex-pairing process takes place between two neighboring large-scale vortices in the separated shear layer.

Static and wind tunnel model tests for the development of externally blown flap noise reduction techniques

NASA Technical Reports Server (NTRS)

Pennock, A. P.; Swift, G.; Marbert, J. A.

1975-01-01

Externally blown flap models were tested for noise and performance at one-fifth scale in a static facility and at one-tenth scale in a large acoustically-treated wind tunnel. The static tests covered two flap designs, conical and ejector nozzles, third-flap noise-reduction treatments, internal blowing, and flap/nozzle geometry variations. The wind tunnel variables were triple-slotted or single-slotted flaps, sweep angle, and solid or perforated third flap. The static test program showed the following noise reductions at takeoff: 1.5 PNdB due to treating the third flap; 0.5 PNdB due to blowing from the third flap; 6 PNdB at flyover and 4.5 PNdB in the critical sideline plane (30 deg elevation) due to installation of the ejector nozzle. The wind tunnel program showed a reduction of 2 PNdB in the sideline plane due to a forward speed of 43.8 m/s (85 kn). The best combination of noise reduction concepts reduced the sideline noise of the reference aircraft at constant field length by 4 PNdB.

Where does the plasmasphere begin? Revisit to topside ionospheric profiles in comparison with plasmaspheric TEC from Jason-1

NASA Astrophysics Data System (ADS)

Lee, Han-Byul; Kim, Yong Ha; Kim, Eunsol; Hong, Junseok; Kwak, Young-Sil

2016-10-01

Topside ionospheric profiles have been measured by Alouette 1 and ISIS 1/2 in the periods of 1962-1972 and 1972-1979, respectively. The profiles cover from the orbital altitude of 1000 km to the F2 peak and show large variations over local time, latitude, and seasons. We here analyze these variations in comparison with plasmaspheric total electron contents (pTECs) that were measured by Jason-1 satellite from the altitude of 1336 km to 20,200 km (GPS orbit). The scale heights of the profiles are generally smaller in the daytime than nighttime but show large day-to-day variations, implying that the ionospheric profiles at 1000 km are changing dynamically, rather than being in diffusive equilibrium. We also derived transition heights between O+ and H+, which show a clear minimum at dawn for low-latitude profiles due to decreasing O+ density at night. To compare with pTEC, we compute topside ionospheric total electron content (tiTEC) by integrating over 800-1336 km using the slope of the profiles. The tiTEC varies in a clear diurnal pattern from 0.3 to 1 and 3 total electron content unit (TECU, 1 TECU = 1016 el m-2) for low and high solar activity, respectively, whereas Jason-1 pTEC values are distributed over 2-6 TECU and 4-8 TECU for low and high solar activity, respectively, with no apparent diurnal modulation. Latitudinal variations of tiTEC show distinctive hemispheric asymmetry while that of Jason-1 pTEC is closely symmetric about the magnetic equator. The local time and latitudinal variations of tiTEC basically resemble those of the ionosphere but are characteristically different from those of Jason-1 pTEC. Based on the difference between tiTEC and pTEC variations, we propose that the region above 1300 km should be considered as the plasmasphere. Lower altitudes for the base of "plasmaspheric TEC," as used in some studies, would cause contamination of ionospheric influence.

Annual and semiannual variations in the ionospheric F2-layer: II. Physical discussion

NASA Astrophysics Data System (ADS)

Rishbeth, H.; Müller-Wodarg, I. C. F.; Zou, L.; Fuller-Rowell, T. J.; Millward, G. H.; Moffett, R. J.; Idenden, D. W.; Aylward, A. D.

2000-08-01

The companion paper by Zou et al. shows that the annual and semiannual variations in the peak F2-layer electron density (NmF2) at midlatitudes can be reproduced by a coupled thermosphere-ionosphere computational model (CTIP), without recourse to external influences such as the solar wind, or waves and tides originating in the lower atmosphere. The present work discusses the physics in greater detail. It shows that noon NmF2 is closely related to the ambient atomic/molecular concentration ratio, and suggests that the variations of NmF2 with geographic and magnetic longitude are largely due to the geometry of the auroral ovals. It also concludes that electric fields play no important part in the dynamics of the midlatitude thermosphere. Our modelling leads to the following picture of the global three-dimensional thermospheric circulation which, as envisaged by Duncan, is the key to explaining the F2-layer variations. At solstice, the almost continuous solar input at high summer latitudes drives a prevailing summer-to-winter wind, with upwelling at low latitudes and throughout most of the summer hemisphere, and a zone of downwelling in the winter hemisphere, just equatorward of the auroral oval. These motions affect thermospheric composition more than do the alternating day/night (up-and-down) motions at equinox. As a result, the thermosphere as a whole is more molecular at solstice than at equinox. Taken in conjunction with the well-known relation of F2-layer electron density to the atomic/molecular ratio in the neutral air, this explains the F2-layer semiannual effect in NmF2 that prevails at low and middle latitudes. At higher midlatitudes, the seasonal behaviour depends on the geographic latitude of the winter downwelling zone, though the effect of the composition changes is modified by the large solar zenith angle at midwinter. The zenith angle effect is especially important in longitudes far from the magnetic poles. Here, the downwelling occurs at high geographic latitudes, where the zenith angle effect becomes overwhelming and causes a midwinter depression of electron density, despite the enhanced atomic/molecular ratio. This leads to a semiannual variation of NmF2. A different situation exists in winter at longitudes near the magnetic poles, where the downwelling occurs at relatively low geographic latitudes so that solar radiation is strong enough to produce large values of NmF2. This circulation-driven mechanism provides a reasonably complete explanation of the observed pattern of F2 layer annual and semiannual quiet-day variations.

Most genetic risk for autism resides with common variation.

PubMed

Gaugler, Trent; Klei, Lambertus; Sanders, Stephan J; Bodea, Corneliu A; Goldberg, Arthur P; Lee, Ann B; Mahajan, Milind; Manaa, Dina; Pawitan, Yudi; Reichert, Jennifer; Ripke, Stephan; Sandin, Sven; Sklar, Pamela; Svantesson, Oscar; Reichenberg, Abraham; Hultman, Christina M; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D

2014-08-01

A key component of genetic architecture is the allelic spectrum influencing trait variability. For autism spectrum disorder (herein termed autism), the nature of the allelic spectrum is uncertain. Individual risk-associated genes have been identified from rare variation, especially de novo mutations. From this evidence, one might conclude that rare variation dominates the allelic spectrum in autism, yet recent studies show that common variation, individually of small effect, has substantial impact en masse. At issue is how much of an impact relative to rare variation this common variation has. Using a unique epidemiological sample from Sweden, new methods that distinguish total narrow-sense heritability from that due to common variation and synthesis of results from other studies, we reach several conclusions about autism's genetic architecture: its narrow-sense heritability is ∼52.4%, with most due to common variation, and rare de novo mutations contribute substantially to individual liability, yet their contribution to variance in liability, 2.6%, is modest compared to that for heritable variation.

Current understanding of the driving mechanisms for spatiotemporal variations of atmospheric speciated mercury: a review

NASA Astrophysics Data System (ADS)

Mao, Huiting; Cheng, Irene; Zhang, Leiming

2016-10-01

Atmospheric mercury (Hg) is a global pollutant and thought to be the main source of mercury in oceanic and remote terrestrial systems, where it becomes methylated and bioavailable; hence, atmospheric mercury pollution has global consequences for both human and ecosystem health. Understanding of spatial and temporal variations of atmospheric speciated mercury can advance our knowledge of mercury cycling in various environments. This review summarized spatiotemporal variations of total gaseous mercury or gaseous elemental mercury (TGM/GEM), gaseous oxidized mercury (GOM), and particulate-bound mercury (PBM) in various environments including oceans, continents, high elevation, the free troposphere, and low to high latitudes. In the marine boundary layer (MBL), the oxidation of GEM was generally thought to drive the diurnal and seasonal variations of TGM/GEM and GOM in most oceanic regions, leading to lower GEM and higher GOM from noon to afternoon and higher GEM during winter and higher GOM during spring-summer. At continental sites, the driving mechanisms of TGM/GEM diurnal patterns included surface and local emissions, boundary layer dynamics, GEM oxidation, and for high-elevation sites mountain-valley winds, while oxidation of GEM and entrainment of free tropospheric air appeared to control the diurnal patterns of GOM. No pronounced diurnal variation was found for Tekran measured PBM at MBL and continental sites. Seasonal variations in TGM/GEM at continental sites were attributed to increased winter combustion and summertime surface emissions, and monsoons in Asia, while those in GOM were controlled by GEM oxidation, free tropospheric transport, anthropogenic emissions, and wet deposition. Increased PBM at continental sites during winter was primarily due to local/regional coal and wood combustion emissions. Long-term TGM measurements from the MBL and continental sites indicated an overall declining trend. Limited measurements suggested TGM/GEM increasing from the Southern Hemisphere (SH) to the Northern Hemisphere (NH) due largely to the vast majority of mercury emissions in the NH, and the latitudinal gradient was insignificant in summer probably as a result of stronger meridional mixing. Aircraft measurements showed no significant vertical variation in GEM over the field campaign regions; however, depletion of GEM was observed in stratospherically influenced air masses. In examining the remaining questions and issues, recommendations for future research needs were provided, and among them is the most imminent need for GOM speciation measurements and fundamental understanding of multiphase redox kinetics.

Intrinsic uncertainty on the nature of dark energy

NASA Astrophysics Data System (ADS)

Valkenburg, Wessel; Kunz, Martin; Marra, Valerio

2013-12-01

We argue that there is an intrinsic noise on measurements of the equation of state parameter w = p/ρ from large-scale structure around us. The presence of the large-scale structure leads to an ambiguity in the definition of the background universe and thus there is a maximal precision with which we can determine the equation of state of dark energy. To study the uncertainty due to local structure, we model density perturbations stemming from a standard inflationary power spectrum by means of the exact Lemaître-Tolman-Bondi solution of Einstein’s equation, and show that the usual distribution of matter inhomogeneities in a ΛCDM cosmology causes a variation of w - as inferred from distance measures - of several percent. As we observe only one universe, or equivalently because of the cosmic variance, this uncertainty is systematic in nature.

Heterogeneous Effects of Birth Spacing on Neonatal Mortality Risks in Bangladesh

PubMed Central

Molitoris, Joseph

2018-01-01

Abstract The negative relationship between birth interval length and neonatal mortality risks is well documented, but heterogeneity in this relationship has been largely ignored. Using the Bangladesh Maternal Mortality and Health Care Survey 2010, this study investigates how the effect of birth interval length on neonatal mortality risks varies by maternal age at birth and maternal education. There is significant variation in the effect of interval length on neonatal mortality along these dimensions. Young mothers and those with little education, both of which make up a large share of the Bangladeshi population, can disproportionately benefit from longer intervals. Because these results were obtained from within‐family models, they are not due to unobservable heterogeneity between mothers. Targeting women with these characteristics may lead to significant improvements in neonatal mortality rates, but there are significant challenges in reaching them. PMID:29508949

An analytic treatment of gravitational microlensing for sources of finite size at large optical depths

NASA Technical Reports Server (NTRS)

Deguchi, Shuji; Watson, William D.

1988-01-01

Statistical methods are developed for gravitational lensing in order to obtain analytic expressions for the average surface brightness that include the effects of microlensing by stellar (or other compact) masses within the lensing galaxy. The primary advance here is in utilizing a Markoff technique to obtain expressions that are valid for sources of finite size when the surface density of mass in the lensing galaxy is large. The finite size of the source is probably the key consideration for the occurrence of microlensing by individual stars. For the intensity from a particular location, the parameter which governs the importance of microlensing is determined. Statistical methods are also formulated to assess the time variation of the surface brightness due to the random motion of the masses that cause the microlensing.

Size dependent exchange bias in single-phase Zn0.3Ni0.7Fe2O4 ferrite nanoparticles

NASA Astrophysics Data System (ADS)

Mohan, Rajendra; Ghosh, Mritunjoy Prasad; Mukherjee, Samrat

2018-07-01

We report the microstructural and magnetic characterization of single phase nanocrystalline partially inverted Zn0.3Ni0.7Fe2O4 mixed spinel ferrite. The samples were annealed at 200 °C, 400 °C, 600 °C, 800 °C and 1000 °C. X-ray diffraction results indicate phase purity of all the samples and application of Debye- Scherrer yielded a crystallite size variation from 5 nm to 33 nm for the different samples. Magnetic measurements have revealed the freezing of interfacial spins which were the cause of the large horizontal M-H loop shift causing large exchange bias with high anisotropy. The magnetic measurements show a hysteresis loop with high effective anisotropy constant due to highly magnetically disordered surface spin at 5 K.

The Uncertainty of Long-term Linear Trend in Global SST Due to Internal Variation

NASA Astrophysics Data System (ADS)

Lian, Tao

2016-04-01

In most parts of the global ocean, the magnitude of the long-term linear trend in sea surface temperature (SST) is much smaller than the amplitude of local multi-scale internal variation. One can thus use the record of a specified period to arbitrarily determine the value and the sign of the long-term linear trend in regional SST, and further leading to controversial conclusions on how global SST responds to global warming in the recent history. Analyzing the linear trend coefficient estimated by the ordinary least-square method indicates that the linear trend consists of two parts: One related to the long-term change, and the other related to the multi-scale internal variation. The sign of the long-term change can be correctly reproduced only when the magnitude of the linear trend coefficient is greater than a theoretical threshold which scales the influence from the multi-scale internal variation. Otherwise, the sign of the linear trend coefficient will depend on the phase of the internal variation, or in the other words, the period being used. An improved least-square method is then proposed to reduce the theoretical threshold. When apply the new method to a global SST reconstruction from 1881 to 2013, we find that in a large part of Pacific, the southern Indian Ocean and North Atlantic, the influence from the multi-scale internal variation on the sign of the linear trend coefficient can-not be excluded. Therefore, the resulting warming or/and cooling linear trends in these regions can-not be fully assigned to global warming.

Time Variations of the Radial Velocity of H2O Masers in the Semi-Regular Variable R Crt

NASA Astrophysics Data System (ADS)

Sudou, Hiroshi; Shiga, Motoki; Omodaka, Toshihiro; Nakai, Chihiro; Ueda, Kazuki; Takaba, Hiroshi

2017-12-01

H2O maser emission {at 22 GHz} in the circumstellar envelope is one of the good tracers of detailed physics and inematics in the mass loss process of asymptotic giant branch stars. Long-term monitoring of an H2O maser spectrum with high time resolution enables us to clarify acceleration processes of the expanding shell in the stellar atmosphere. We monitored the H2O maser emission of the semi-regular variable R Crt with the Kagoshima 6-m telescope, and obtained a large data set of over 180 maser spectra over a period of 1.3 years with an observational span of a few days. Using an automatic peak detection method based on least-squares fitting, we exhaustively detected peaks as significant velocity components with the radial velocity on a 0.1 km s^{-1} scale. This analysis result shows that the radial velocity of red-shifted and blue-shifted components exhibits a change between acceleration and deceleration on the time scale of a few hundred days. These velocity variations are likely to correlate with intensity variations, in particular during flaring state of H2O masers. It seems reasonable to consider that the velocity variation of the maser source is caused by shock propagation in the envelope due to stellar pulsation.However, it is difficult to explain the relationship between the velocity variation and the intensity variation only from shock propagation effects. We found that a time delay of the integrated maser intensity with respect to the optical light curve is about 150 days.

Background field removal using a region adaptive kernel for quantitative susceptibility mapping of human brain

NASA Astrophysics Data System (ADS)

Fang, Jinsheng; Bao, Lijun; Li, Xu; van Zijl, Peter C. M.; Chen, Zhong

2017-08-01

Background field removal is an important MR phase preprocessing step for quantitative susceptibility mapping (QSM). It separates the local field induced by tissue magnetic susceptibility sources from the background field generated by sources outside a region of interest, e.g. brain, such as air-tissue interface. In the vicinity of air-tissue boundary, e.g. skull and paranasal sinuses, where large susceptibility variations exist, present background field removal methods are usually insufficient and these regions often need to be excluded by brain mask erosion at the expense of losing information of local field and thus susceptibility measures in these regions. In this paper, we propose an extension to the variable-kernel sophisticated harmonic artifact reduction for phase data (V-SHARP) background field removal method using a region adaptive kernel (R-SHARP), in which a scalable spherical Gaussian kernel (SGK) is employed with its kernel radius and weights adjustable according to an energy "functional" reflecting the magnitude of field variation. Such an energy functional is defined in terms of a contour and two fitting functions incorporating regularization terms, from which a curve evolution model in level set formation is derived for energy minimization. We utilize it to detect regions of with a large field gradient caused by strong susceptibility variation. In such regions, the SGK will have a small radius and high weight at the sphere center in a manner adaptive to the voxel energy of the field perturbation. Using the proposed method, the background field generated from external sources can be effectively removed to get a more accurate estimation of the local field and thus of the QSM dipole inversion to map local tissue susceptibility sources. Numerical simulation, phantom and in vivo human brain data demonstrate improved performance of R-SHARP compared to V-SHARP and RESHARP (regularization enabled SHARP) methods, even when the whole paranasal sinus regions are preserved in the brain mask. Shadow artifacts due to strong susceptibility variations in the derived QSM maps could also be largely eliminated using the R-SHARP method, leading to more accurate QSM reconstruction.

Background field removal using a region adaptive kernel for quantitative susceptibility mapping of human brain.

PubMed

Fang, Jinsheng; Bao, Lijun; Li, Xu; van Zijl, Peter C M; Chen, Zhong

2017-08-01

Background field removal is an important MR phase preprocessing step for quantitative susceptibility mapping (QSM). It separates the local field induced by tissue magnetic susceptibility sources from the background field generated by sources outside a region of interest, e.g. brain, such as air-tissue interface. In the vicinity of air-tissue boundary, e.g. skull and paranasal sinuses, where large susceptibility variations exist, present background field removal methods are usually insufficient and these regions often need to be excluded by brain mask erosion at the expense of losing information of local field and thus susceptibility measures in these regions. In this paper, we propose an extension to the variable-kernel sophisticated harmonic artifact reduction for phase data (V-SHARP) background field removal method using a region adaptive kernel (R-SHARP), in which a scalable spherical Gaussian kernel (SGK) is employed with its kernel radius and weights adjustable according to an energy "functional" reflecting the magnitude of field variation. Such an energy functional is defined in terms of a contour and two fitting functions incorporating regularization terms, from which a curve evolution model in level set formation is derived for energy minimization. We utilize it to detect regions of with a large field gradient caused by strong susceptibility variation. In such regions, the SGK will have a small radius and high weight at the sphere center in a manner adaptive to the voxel energy of the field perturbation. Using the proposed method, the background field generated from external sources can be effectively removed to get a more accurate estimation of the local field and thus of the QSM dipole inversion to map local tissue susceptibility sources. Numerical simulation, phantom and in vivo human brain data demonstrate improved performance of R-SHARP compared to V-SHARP and RESHARP (regularization enabled SHARP) methods, even when the whole paranasal sinus regions are preserved in the brain mask. Shadow artifacts due to strong susceptibility variations in the derived QSM maps could also be largely eliminated using the R-SHARP method, leading to more accurate QSM reconstruction. Copyright © 2017. Published by Elsevier Inc.

Reverse Transcription Errors and RNA-DNA Differences at Short Tandem Repeats.

PubMed

Fungtammasan, Arkarachai; Tomaszkiewicz, Marta; Campos-Sánchez, Rebeca; Eckert, Kristin A; DeGiorgio, Michael; Makova, Kateryna D

2016-10-01

Transcript variation has important implications for organismal function in health and disease. Most transcriptome studies focus on assessing variation in gene expression levels and isoform representation. Variation at the level of transcript sequence is caused by RNA editing and transcription errors, and leads to nongenetically encoded transcript variants, or RNA-DNA differences (RDDs). Such variation has been understudied, in part because its detection is obscured by reverse transcription (RT) and sequencing errors. It has only been evaluated for intertranscript base substitution differences. Here, we investigated transcript sequence variation for short tandem repeats (STRs). We developed the first maximum-likelihood estimator (MLE) to infer RT error and RDD rates, taking next generation sequencing error rates into account. Using the MLE, we empirically evaluated RT error and RDD rates for STRs in a large-scale DNA and RNA replicated sequencing experiment conducted in a primate species. The RT error rates increased exponentially with STR length and were biased toward expansions. The RDD rates were approximately 1 order of magnitude lower than the RT error rates. The RT error rates estimated with the MLE from a primate data set were concordant with those estimated with an independent method, barcoded RNA sequencing, from a Caenorhabditis elegans data set. Our results have important implications for medical genomics, as STR allelic variation is associated with >40 diseases. STR nonallelic transcript variation can also contribute to disease phenotype. The MLE and empirical rates presented here can be used to evaluate the probability of disease-associated transcripts arising due to RDD. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

High intralocus variability and interlocus recombination promote immunological diversity in a minimal major histocompatibility system.

PubMed

Wilson, Anthony B; Whittington, Camilla M; Bahr, Angela

2014-12-20

The genes of the major histocompatibility complex (MHC/MH) have attracted considerable scientific interest due to their exceptional levels of variability and important function as part of the adaptive immune system. Despite a large number of studies on MH class II diversity of both model and non-model organisms, most research has focused on patterns of genetic variability at individual loci, failing to capture the functional diversity of the biologically active dimeric molecule. Here, we take a systematic approach to the study of MH variation, analyzing patterns of genetic variation at MH class IIα and IIβ loci of the seahorse, which together form the immunologically active peptide binding cleft of the MH class II molecule. The seahorse carries a minimal class II system, consisting of single copies of both MH class IIα and IIβ, which are physically linked and inherited in a Mendelian fashion. Both genes are ubiquitously expressed and detectible in the brood pouch of male seahorses throughout pregnancy. Genetic variability of the two genes is high, dominated by non-synonymous variation concentrated in their peptide-binding regions. Coding variation outside these regions is negligible, a pattern thought to be driven by intra- and interlocus recombination. Despite the tight physical linkage of MH IIα and IIβ loci, recombination has produced novel composite alleles, increasing functional diversity at sites responsible for antigen recognition. Antigen recognition by the adaptive immune system of the seahorse is enhanced by high variability at both MH class IIα and IIβ loci. Strong positive selection on sites involved in pathogen recognition, coupled with high levels of intra- and interlocus recombination, produce a patchwork pattern of genetic variation driven by genetic hitchhiking. Studies focusing on variation at individual MH loci may unintentionally overlook an important component of ecologically relevant variation.

Extremely Rapid Crystal Fractionation During Episodes 30-31 of the Pu`u O`o Eruption: Implications for Magma Chamber Processes

NASA Astrophysics Data System (ADS)

Garcia, M. O.; Rhodes, J. M.; Pietruszka, A. J.; Rose, W. I.

2002-12-01

The Pu`u O`o eruption offers excellent opportunities to examine petrologic and geochemical processes in shallow, basaltic magma chamber due to the intense, multi-disciplinary monitoring of its activity, frequent sampling and repeated eruptions at the same vent. Strong compositional variations were observed during some of the high fire-fountaining (400 m) episodes in 1985. Following a 20-30 day hiatus in eruptive activity, the shallow magma chamber was largely evacuated during brief (1-2 day) eruptions. Samples collected during these episodes, especially at the beginning and end, document the compositional variation between and during eruptive episodes. Lavas and tephra from episodes 30 and 31 showed a remarkable and systematic variation (2 wt% increase in MgO; 7% decrease in incompatible elements like Ba) during and between these episodes. Most of the intra-episode lava compositional variation was observed during a brief period (<2 hours) with little variation before or after. Olivines in these weakly prophyritic Pu`u O`o lavas are in equilibrium with the host rock composition indicating that compositional variation is not related to magma mixing or accumulation of olivine. We interpret the variation to reflect crystal fractionation within the shallow (tens to hundreds of meter deep) Pu`u O`o magma chamber. This extremely high rate of crystallization (up to 0.3%/day) and cooling (2°C/day), compared to estimates of 1°C/year for the rift zone interior, must reflect the high surface area of the dike-shaped and open topped magma chamber. These features may represent the tapping of a diffusive interface separating well mixed zones of hotter and more primitive magma in the lower part of the chamber from cooler, somewhat evolved magma above.

Correlated Radial Velocity and X-Ray Variations in HD 154791/4U 1700+24

NASA Astrophysics Data System (ADS)

Galloway, Duncan K.; Sokoloski, J. L.; Kenyon, Scott J.

2002-12-01

We present evidence for approximately 400 day variations in the radial velocity of HD 154791 (V934 Her), the suggested optical counterpart of 4U 1700+24. The variations are correlated with the previously reported ~400 day variations in the X-ray flux of 4U 1700+24, which supports the association of these two objects, as well as the identification of this system as the second known X-ray binary in which a neutron star accretes from the wind of a red giant. The HD 154791 radial velocity variations can be fitted with an eccentric orbit with period 404+/-3 days, amplitude K=0.75+/-0.12kms-1, and eccentricity e=0.26+/-0.15. There are also indications of variations on longer timescales >~2000 days. We have reexamined all available All-Sky Monitor (ASM) data following an unusually large X-ray outburst in 1997-1998 and confirm that the 1 day averaged 2-10 keV X-ray flux from 4U 1700+24 is modulated with a period of 400+/-20 days. The mean profile of the persistent X-ray variations was approximately sinusoidal, with an amplitude of 0.108+/-0.012 ASM counts s-1 (corresponding to 31% rms). The epoch of X-ray maximum was approximately 40 days after the time of periastron, according to the eccentric orbital fit. If the 400 day oscillations from HD 154791/4U 1700+24 are due to orbital motion, then the system parameters are probably close to those of the only other neutron star symbiotic-like binary, GX 1+4. We discuss the similarities and differences between these two systems.

Longitudinal Variations in the Variability of Spread F Occurrence

NASA Astrophysics Data System (ADS)

Groves, K. M.; Bridgwood, C.; Carrano, C. S.

2017-12-01

The complex dynamics of the equatorial ionosphere have attracted the interest and attention of researchers for many decades. The relatively local processes that give rise to large meridional gradients have been well documented and the associated terminology has entered the common lexicon of ionospheric research (e.g., fountain effect, equatorial anomaly, bubbles, Spread F). Zonal variations have also been noted, principally at the level of determining longitudinal differences in seasonal activity patterns. Due to a historical lack of high resolution ground-based observations at low latitudes, the primary source of data for such analyses has been space-based observations from satellites such as ROCSAT, DMSP, C/NOFS that measure in situ electron density variations. An important longitudinal variation in electron density structure associated with non-migrating diurnal tides was discovered by Immel et al. in 2006 using data from the FUV sensor aboard the NASA IMAGE satellite. These satellite observations have been very helpful in identifying the structural characteristics of the equatorial ionosphere and the occurrence of Spread F, but they provide little insight into variations in scintillation features and potential differences in bubble development characteristics. Moreover space-based studies tend towards the statistics of occurrence frequency over periods of weeks to months. A recent analysis of daily spread F occurrence as determined by low latitude VHF scintillation activity shows that statistical results that are consistent with previous space-based observations, but the level of variability in the occurrence data show marked variations with longitude. For example, the American sector shows very low in-season variability while the African and Asian sectors exhibit true day-to-day variability regardless of seasonal variations. The results have significant implications for space weather as they suggest that long-term forecasts of equatorial scintillation may be meaningful within specific longitude boundaries.

A comparative study of the response of modeled non-drizzling stratocumulus to meteorological and aerosol perturbations

NASA Astrophysics Data System (ADS)

Petters, J. L.; Jiang, H.; Feingold, G.; Rossiter, D. L.; Khelif, D.; Sloan, L. C.; Chuang, P. Y.

2013-03-01

The impact of changes in aerosol and cloud droplet concentration (Na and Nd) on the radiative forcing of stratocumulus-topped boundary layers (STBLs) has been widely studied. How these impacts compare to those due to variations in meteorological context has not been investigated in a systematic fashion for non-drizzling overcast stratocumulus. In this study we examine the impact of observed variations in meteorological context and aerosol state on daytime, non-drizzling overcast stratiform evolution, and determine how resulting changes in cloud properties compare. Using large-eddy simulation (LES) we create a model base case of daytime southeast Pacific coastal stratocumulus, spanning a portion of the diurnal cycle (early morning to near noon) and constrained by observations taken during the VOCALS (VAMOS Ocean-Atmosphere-Land Study) field campaign. We perturb aerosol and meteorological properties around this base case to investigate the stratocumulus response. We determine perturbations in the cloud top jumps in potential temperature θ and total water mixing ratio qt from ECMWF Re-analysis Interim data, and use a set of Nd values spanning the observable range. To determine the cloud response to these meteorological and aerosol perturbations, we compute changes in liquid water path (LWP), bulk optical depth (τ) and cloud radiative forcing (CRF). We find that realistic variations in the thermodynamic jump properties can elicit a response in the cloud properties of τ and shortwave (SW) CRF that are on the same order of magnitude as the response found due to realistic changes in aerosol state (i.e Nd). In response to increases in Nd, the cloud layer in the base case thinned due to increases in evaporative cooling and entrainment rate. This cloud thinning somewhat mitigates the increase in τ resulting from increases in Nd. On the other hand, variations in θ and qt jumps did not substantially modify Nd. The cloud layer thickens in response to an increase in the θ jump and thins in response to an increase in the qt jump, both resulting in a τ and SW CRF response comparable to those found from perturbations in Nd. Longwave CRF was not substantially altered by the perturbations we tested. We find that realistic variations in meteorological context can elicit a response in CRF and τ on the same order of magnitude as, and at times larger than, that response found due to realistic changes in aerosol state. We estimate the limits on variability of cloud top jump properties required for accurate observation of aerosol SW radiative impacts on stratocumulus, and find strict constraints: less than 1 K and 1 g kg-1 in the early morning hours, and order 0.1 K and 0.1 g kg-1 close to solar noon. These constraints suggest that accurately observing aerosol radiative impacts in stratocumulus may be challenging as co-variation of meteorological properties may obfuscate aerosol-cloud interactions.