Model simulations and proxy-based reconstructions for the European region in the past millennium (Invited)

NASA Astrophysics Data System (ADS)

Zorita, E.

2009-12-01

One of the objectives when comparing simulations of past climates to proxy-based climate reconstructions is to asses the skill of climate models to simulate climate change. This comparison may accomplished at large spatial scales, for instance the evolution of simulated and reconstructed Northern Hemisphere annual temperature, or at regional or point scales. In both approaches a 'fair' comparison has to take into account different aspects that affect the inevitable uncertainties and biases in the simulations and in the reconstructions. These efforts face a trade-off: climate models are believed to be more skillful at large hemispheric scales, but climate reconstructions are these scales are burdened by the spatial distribution of available proxies and by methodological issues surrounding the statistical method used to translate the proxy information into large-spatial averages. Furthermore, the internal climatic noise at large hemispheric scales is low, so that the sampling uncertainty tends to be also low. On the other hand, the skill of climate models at regional scales is limited by the coarse spatial resolution, which hinders a faithful representation of aspects important for the regional climate. At small spatial scales, the reconstruction of past climate probably faces less methodological problems if information from different proxies is available. The internal climatic variability at regional scales is, however, high. In this contribution some examples of the different issues faced when comparing simulation and reconstructions at small spatial scales in the past millennium are discussed. These examples comprise reconstructions from dendrochronological data and from historical documentary data in Europe and climate simulations with global and regional models. These examples indicate that the centennial climate variations can offer a reasonable target to assess the skill of global climate models and of proxy-based reconstructions, even at small spatial scales. However, as the focus shifts towards higher frequency variability, decadal or multidecadal, the need for larger simulation ensembles becomes more evident. Nevertheless,the comparison at these time scales may expose some lines of research on the origin of multidecadal regional climate variability.

Automating the implementation of an equilibrium profile model for glacier reconstruction in a GIS environment

NASA Astrophysics Data System (ADS)

Frew, Craig R.; Pellitero, Ramón; Rea, Brice R.; Spagnolo, Matteo; Bakke, Jostein; Hughes, Philip D.; Ivy-Ochs, Susan; Lukas, Sven; Renssen, Hans; Ribolini, Adriano

2014-05-01

Reconstruction of glacier equilibrium line altitudes (ELAs) associated with advance stages of former ice masses is widely used as a tool for palaeoclimatic reconstruction. This requires an accurate reconstruction of palaeo-glacier surface hypsometry, based on mapping of available ice-marginal landform evidence. Classically, the approach used to define ice-surface elevations, using such evidence, follows the 'cartographic method', whereby contours are estimated based on an 'understanding' of the typical surface form of contemporary ice masses. This method introduces inherent uncertainties in the palaeoclimatic interpretation of reconstructed ELAs, especially where the upper limits of glaciation are less well constrained and/or the age of such features in relation to terminal moraine sequences is unknown. An alternative approach is to use equilibrium profile models to define ice surface elevations. Such models are tuned, generally using basal shear stress, in order to generate an ice surface that reaches 'target elevations' defined by geomorphology. In areas where there are no geomorphological constraints for the former ice surface, the reconstruction is undertaken using glaciologiaclly representative values for basal shear stress. Numerical reconstructions have been shown to produce glaciologically "realistic" ice surface geometries, allowing for more objective and robust comparative studies at local to regional scales. User-friendly tools for the calculation of equilibrium profiles are presently available in the literature. Despite this, their use is not yet widespread, perhaps owing to the difficult and time consuming nature of acquiring the necessary inputs from contour maps or digital elevation models. Here we describe a tool for automatically reconstructing palaeo-glacier surface geometry using an equilibrium profile equation implemented in ArcGIS. The only necessary inputs for this tool are 1) a suitable digital elevation model and 2) mapped outlines of the former glacier terminus position (usually a frontal moraine system) and any relevant geomorphological constraints on ice surface elevation (e.g. lateral moraines, trimlines etc.). This provides a standardised method for glacier reconstruction that can be applied rapidly and systematically to large geomorphological datasets.

Adaptive 3D Face Reconstruction from Unconstrained Photo Collections.

PubMed

Roth, Joseph; Tong, Yiying; Liu, Xiaoming

2016-12-07

Given a photo collection of "unconstrained" face images of one individual captured under a variety of unknown pose, expression, and illumination conditions, this paper presents a method for reconstructing a 3D face surface model of the individual along with albedo information. Unlike prior work on face reconstruction that requires large photo collections, we formulate an approach to adapt to photo collections with a high diversity in both the number of images and the image quality. To achieve this, we incorporate prior knowledge about face shape by fitting a 3D morphable model to form a personalized template, following by using a novel photometric stereo formulation to complete the fine details, under a coarse-to-fine scheme. Our scheme incorporates a structural similarity-based local selection step to help identify a common expression for reconstruction while discarding occluded portions of faces. The evaluation of reconstruction performance is through a novel quality measure, in the absence of ground truth 3D scans. Superior large-scale experimental results are reported on synthetic, Internet, and personal photo collections.

3D Reconstruction in the Presence of Glass and Mirrors by Acoustic and Visual Fusion.

PubMed

Zhang, Yu; Ye, Mao; Manocha, Dinesh; Yang, Ruigang

2017-07-06

We present a practical and inexpensive method to reconstruct 3D scenes that include transparent and mirror objects. Our work is motivated by the need for automatically generating 3D models of interior scenes, which commonly include glass. These large structures are often invisible to cameras. Existing 3D reconstruction methods for transparent objects are usually not applicable in such a room-sized reconstruction setting. Our simple hardware setup augments a regular depth camera with a single ultrasonic sensor, which is able to measure the distance to any object, including transparent surfaces. The key technical challenge is the sparse sampling rate from the acoustic sensor, which only takes one point measurement per frame. To address this challenge, we take advantage of the fact that the large scale glass structures in indoor environments are usually either piece-wise planar or simple parametric surfaces. Based on these assumptions, we have developed a novel sensor fusion algorithm that first segments the (hybrid) depth map into different categories such as opaque/transparent/infinity (e.g., too far to measure) and then updates the depth map based on the segmentation outcome. We validated our algorithms with a number of challenging cases, including multiple panes of glass, mirrors, and even a curved glass cabinet.

Multi-thread parallel algorithm for reconstructing 3D large-scale porous structures

NASA Astrophysics Data System (ADS)

Ju, Yang; Huang, Yaohui; Zheng, Jiangtao; Qian, Xu; Xie, Heping; Zhao, Xi

2017-04-01

Geomaterials inherently contain many discontinuous, multi-scale, geometrically irregular pores, forming a complex porous structure that governs their mechanical and transport properties. The development of an efficient reconstruction method for representing porous structures can significantly contribute toward providing a better understanding of the governing effects of porous structures on the properties of porous materials. In order to improve the efficiency of reconstructing large-scale porous structures, a multi-thread parallel scheme was incorporated into the simulated annealing reconstruction method. In the method, four correlation functions, which include the two-point probability function, the linear-path functions for the pore phase and the solid phase, and the fractal system function for the solid phase, were employed for better reproduction of the complex well-connected porous structures. In addition, a random sphere packing method and a self-developed pre-conditioning method were incorporated to cast the initial reconstructed model and select independent interchanging pairs for parallel multi-thread calculation, respectively. The accuracy of the proposed algorithm was evaluated by examining the similarity between the reconstructed structure and a prototype in terms of their geometrical, topological, and mechanical properties. Comparisons of the reconstruction efficiency of porous models with various scales indicated that the parallel multi-thread scheme significantly shortened the execution time for reconstruction of a large-scale well-connected porous model compared to a sequential single-thread procedure.

Pushing CHARA to its Limit: A Pathway Toward 80X80 Pixel Images of Stellar Surfaces

NASA Astrophysics Data System (ADS)

Norris, Ryan

2018-04-01

Imagine a future with 80x80 pixel images of stellar surfaces. With a maximum baseline of 330 m, the CHARA Array is already capable of achieving 0.5 mas resolution, sufficient for imaging the red supergiant Betelgeuse (d = 42.3 mas ) at such a scale. However several issues have hampered attempts to image the largest stars at CHARA, including a lack of baselines shorter than 34 m and instrument sensitivities unable to measure the faintest fringes. Here we discuss what is needed to achieve imaging of large stars at CHARA. We will present suggestions for future telescope placement, describing the advantages of a short baseline, while also considering the needs of other imaging targets that might benefit from additional baselines. We will also present developments in image reconstruction methods that can improve the resolution of images today, albeit of smaller targets and at a lesser scale. Of course, there will be example images, created using simulated oifits data and state of the art reconstruction techniques!

On distributed wavefront reconstruction for large-scale adaptive optics systems.

PubMed

de Visser, Cornelis C; Brunner, Elisabeth; Verhaegen, Michel

2016-05-01

The distributed-spline-based aberration reconstruction (D-SABRE) method is proposed for distributed wavefront reconstruction with applications to large-scale adaptive optics systems. D-SABRE decomposes the wavefront sensor domain into any number of partitions and solves a local wavefront reconstruction problem on each partition using multivariate splines. D-SABRE accuracy is within 1% of a global approach with a speedup that scales quadratically with the number of partitions. The D-SABRE is compared to the distributed cumulative reconstruction (CuRe-D) method in open-loop and closed-loop simulations using the YAO adaptive optics simulation tool. D-SABRE accuracy exceeds CuRe-D for low levels of decomposition, and D-SABRE proved to be more robust to variations in the loop gain.

Trace: a high-throughput tomographic reconstruction engine for large-scale datasets.

PubMed

Bicer, Tekin; Gürsoy, Doğa; Andrade, Vincent De; Kettimuthu, Rajkumar; Scullin, William; Carlo, Francesco De; Foster, Ian T

2017-01-01

Modern synchrotron light sources and detectors produce data at such scale and complexity that large-scale computation is required to unleash their full power. One of the widely used imaging techniques that generates data at tens of gigabytes per second is computed tomography (CT). Although CT experiments result in rapid data generation, the analysis and reconstruction of the collected data may require hours or even days of computation time with a medium-sized workstation, which hinders the scientific progress that relies on the results of analysis. We present Trace, a data-intensive computing engine that we have developed to enable high-performance implementation of iterative tomographic reconstruction algorithms for parallel computers. Trace provides fine-grained reconstruction of tomography datasets using both (thread-level) shared memory and (process-level) distributed memory parallelization. Trace utilizes a special data structure called replicated reconstruction object to maximize application performance. We also present the optimizations that we apply to the replicated reconstruction objects and evaluate them using tomography datasets collected at the Advanced Photon Source. Our experimental evaluations show that our optimizations and parallelization techniques can provide 158× speedup using 32 compute nodes (384 cores) over a single-core configuration and decrease the end-to-end processing time of a large sinogram (with 4501 × 1 × 22,400 dimensions) from 12.5 h to <5 min per iteration. The proposed tomographic reconstruction engine can efficiently process large-scale tomographic data using many compute nodes and minimize reconstruction times.

Structural transformation in monolayer materials: a 2D to 1D transformation.

PubMed

Momeni, Kasra; Attariani, Hamed; LeSar, Richard A

2016-07-20

Reducing the dimensions of materials to atomic scales results in a large portion of atoms being at or near the surface, with lower bond order and thus higher energy. At such scales, reduction of the surface energy and surface stresses can be the driving force for the formation of new low-dimensional nanostructures, and may be exhibited through surface relaxation and/or surface reconstruction, which can be utilized for tailoring the properties and phase transformation of nanomaterials without applying any external load. Here we used atomistic simulations and revealed an intrinsic structural transformation in monolayer materials that lowers their dimension from 2D nanosheets to 1D nanostructures to reduce their surface and elastic energies. Experimental evidence of such transformation has also been revealed for one of the predicted nanostructures. Such transformation plays an important role in bi-/multi-layer 2D materials.

An objective algorithm for reconstructing the three-dimensional ocean temperature field based on Argo profiles and SST data

NASA Astrophysics Data System (ADS)

Zhou, Chaojie; Ding, Xiaohua; Zhang, Jie; Yang, Jungang; Ma, Qiang

2017-12-01

While global oceanic surface information with large-scale, real-time, high-resolution data is collected by satellite remote sensing instrumentation, three-dimensional (3D) observations are usually obtained from in situ measurements, but with minimal coverage and spatial resolution. To meet the needs of 3D ocean investigations, we have developed a new algorithm to reconstruct the 3D ocean temperature field based on the Array for Real-time Geostrophic Oceanography (Argo) profiles and sea surface temperature (SST) data. The Argo temperature profiles are first optimally fitted to generate a series of temperature functions of depth, with the vertical temperature structure represented continuously. By calculating the derivatives of the fitted functions, the calculation of the vertical temperature gradient of the Argo profiles at an arbitrary depth is accomplished. A gridded 3D temperature gradient field is then found by applying inverse distance weighting interpolation in the horizontal direction. Combined with the processed SST, the 3D temperature field reconstruction is realized below the surface using the gridded temperature gradient. Finally, to confirm the effectiveness of the algorithm, an experiment in the Pacific Ocean south of Japan is conducted, for which a 3D temperature field is generated. Compared with other similar gridded products, the reconstructed 3D temperature field derived by the proposed algorithm achieves satisfactory accuracy, with correlation coefficients of 0.99 obtained, including a higher spatial resolution (0.25° × 0.25°), resulting in the capture of smaller-scale characteristics. Finally, both the accuracy and the superiority of the algorithm are validated.

An automated 3D reconstruction method of UAV images

NASA Astrophysics Data System (ADS)

Liu, Jun; Wang, He; Liu, Xiaoyang; Li, Feng; Sun, Guangtong; Song, Ping

2015-10-01

In this paper a novel fully automated 3D reconstruction approach based on low-altitude unmanned aerial vehicle system (UAVs) images will be presented, which does not require previous camera calibration or any other external prior knowledge. Dense 3D point clouds are generated by integrating orderly feature extraction, image matching, structure from motion (SfM) and multi-view stereo (MVS) algorithms, overcoming many of the cost, time limitations of rigorous photogrammetry techniques. An image topology analysis strategy is introduced to speed up large scene reconstruction by taking advantage of the flight-control data acquired by UAV. Image topology map can significantly reduce the running time of feature matching by limiting the combination of images. A high-resolution digital surface model of the study area is produced base on UAV point clouds by constructing the triangular irregular network. Experimental results show that the proposed approach is robust and feasible for automatic 3D reconstruction of low-altitude UAV images, and has great potential for the acquisition of spatial information at large scales mapping, especially suitable for rapid response and precise modelling in disaster emergency.

Mapping the integrated Sachs-Wolfe effect

NASA Astrophysics Data System (ADS)

Manzotti, A.; Dodelson, S.

2014-12-01

On large scales, the anisotropies in the cosmic microwave background (CMB) reflect not only the primordial density field but also the energy gain when photons traverse decaying gravitational potentials of large scale structure, what is called the integrated Sachs-Wolfe (ISW) effect. Decomposing the anisotropy signal into a primordial piece and an ISW component, the main secondary effect on large scales, is more urgent than ever as cosmologists strive to understand the Universe on those scales. We present a likelihood technique for extracting the ISW signal combining measurements of the CMB, the distribution of galaxies, and maps of gravitational lensing. We test this technique with simulated data showing that we can successfully reconstruct the ISW map using all the data sets together. Then we present the ISW map obtained from a combination of real data: the NRAO VLA sky survey (NVSS) galaxy survey, temperature anisotropies, and lensing maps made by the Planck satellite. This map shows that, with the data sets used and assuming linear physics, there is no evidence, from the reconstructed ISW signal in the Cold Spot region, for an entirely ISW origin of this large scale anomaly in the CMB. However a large scale structure origin from low redshift voids outside the NVSS redshift range is still possible. Finally we show that future surveys, thanks to a better large scale lensing reconstruction will be able to improve the reconstruction signal to noise which is now mainly coming from galaxy surveys.

Data-driven modeling of surface temperature anomaly and solar activity trends

USGS Publications Warehouse

Friedel, Michael J.

2012-01-01

A novel two-step modeling scheme is used to reconstruct and analyze surface temperature and solar activity data at global, hemispheric, and regional scales. First, the self-organizing map (SOM) technique is used to extend annual modern climate data from the century to millennial scale. The SOM component planes are used to identify and quantify strength of nonlinear relations among modern surface temperature anomalies (<150 years), tropical and extratropical teleconnections, and Palmer Drought Severity Indices (0–2000 years). Cross-validation of global sea and land surface temperature anomalies verifies that the SOM is an unbiased estimator with less uncertainty than the magnitude of anomalies. Second, the quantile modeling of SOM reconstructions reveal trends and periods in surface temperature anomaly and solar activity whose timing agrees with published studies. Temporal features in surface temperature anomalies, such as the Medieval Warm Period, Little Ice Age, and Modern Warming Period, appear at all spatial scales but whose magnitudes increase when moving from ocean to land, from global to regional scales, and from southern to northern regions. Some caveats that apply when interpreting these data are the high-frequency filtering of climate signals based on quantile model selection and increased uncertainty when paleoclimatic data are limited. Even so, all models find the rate and magnitude of Modern Warming Period anomalies to be greater than those during the Medieval Warm Period. Lastly, quantile trends among reconstructed equatorial Pacific temperature profiles support the recent assertion of two primary El Niño Southern Oscillation types. These results demonstrate the efficacy of this alternative modeling approach for reconstructing and interpreting scale-dependent climate variables.

A Regularized Volumetric Fusion Framework for Large-Scale 3D Reconstruction

NASA Astrophysics Data System (ADS)

Rajput, Asif; Funk, Eugen; Börner, Anko; Hellwich, Olaf

2018-07-01

Modern computational resources combined with low-cost depth sensing systems have enabled mobile robots to reconstruct 3D models of surrounding environments in real-time. Unfortunately, low-cost depth sensors are prone to produce undesirable estimation noise in depth measurements which result in either depth outliers or introduce surface deformations in the reconstructed model. Conventional 3D fusion frameworks integrate multiple error-prone depth measurements over time to reduce noise effects, therefore additional constraints such as steady sensor movement and high frame-rates are required for high quality 3D models. In this paper we propose a generic 3D fusion framework with controlled regularization parameter which inherently reduces noise at the time of data fusion. This allows the proposed framework to generate high quality 3D models without enforcing additional constraints. Evaluation of the reconstructed 3D models shows that the proposed framework outperforms state of art techniques in terms of both absolute reconstruction error and processing time.

Empirical downscaling of atmospheric key variables above a tropical glacier surface (Cordillera Blanca, Peru)

NASA Astrophysics Data System (ADS)

Hofer, M.; Kaser, G.; Mölg, T.; Juen, I.; Wagnon, P.

2009-04-01

Glaciers in the outer tropical Cordillera Blanca (Peru, South America) are of major socio-economic importance, since glacier runoff represents the primary water source during the dry season, when little or no rainfall occurs. Due to their location at high elevations, the glaciers moreover provide important information about climate change in the tropical troposphere, where measurements are sparse. This study targets the local reconstruction of air temperature, specific humidity and wind speed above the surface of an outer tropical glacier from NCEP/NCAR reanalysis data as large scale predictors. Since a farther scope is to provide input data for process based glacier mass balance modelling, the reconstruction pursues a high temporal resolution. Hence an empirical downscaling scheme is developed, based on a few years' time series of hourly observations from automatic weather stations, located at the glacier Artesonraju and nearby moraines (Northern Cordillera Blanca). Principal component and multiple regression analyses are applied to define the appropriate spatial downscaling domain, suitable predictor variables, and the statistical transfer functions. The model performance is verified using an independent data set. The best predictors are lower tropospheric air temperature and specific humidity, at reanalysis model grid points that represent the Bolivian Altiplano, located in the South of the Cordillera Blanca. The developed downscaling model explaines a considerable portion (more than 60%) of the diurnal variance of air temperature and specific humidity at the moraine stations, and air temperature above the glacier surface. Specific humidity above the glacier surface, however, can be reconstructed well in the seasonal, but not in the required diurnal time resolution. Wind speed can only be poorly determined by the large scale predictors (r² lower than 0.3) at both sites. We assume a complex local interaction between valley and glacier wind system to be the main cause for the differences between model and observations.

Electronic structure reconstruction across the antiferromagnetic transition in TaFe₁̣₂₃Te₃ spin ladder

DOE PAGES

Xu, Min; Wang, Li -Min; Peng, Rui; ...

2015-02-01

With angle-resolved photoemission spectroscopy, we studied the electronic structure of TaFe₁̣₂₃Te₃, a two-leg spin ladder compound with a novel antiferromagnetic ground state. Quasi-two-dimensional Fermi surface is observed, with sizable inter-ladder hopping. Moreover, instead of observing an energy gap at the Fermi surface in the antiferromagnetic state, we observed the shifts of various bands. Combining these observations with density-functional-theory calculations, we propose that the large scale reconstruction of the electronic structure, caused by the interactions between coexisting itinerant electrons and local moments, is most likely the driving force of the magnetic transition. Thus TaFe₁̣₂₃Te₃ serves as a simpler platform that containsmore » similar ingredients as the parent compounds of iron-based superconductors.« less

Trace: a high-throughput tomographic reconstruction engine for large-scale datasets

DOE PAGES

Bicer, Tekin; Gursoy, Doga; Andrade, Vincent De; ...

2017-01-28

Here, synchrotron light source and detector technologies enable scientists to perform advanced experiments. These scientific instruments and experiments produce data at such scale and complexity that large-scale computation is required to unleash their full power. One of the widely used data acquisition technique at light sources is Computed Tomography, which can generate tens of GB/s depending on x-ray range. A large-scale tomographic dataset, such as mouse brain, may require hours of computation time with a medium size workstation. In this paper, we present Trace, a data-intensive computing middleware we developed for implementation and parallelization of iterative tomographic reconstruction algorithms. Tracemore » provides fine-grained reconstruction of tomography datasets using both (thread level) shared memory and (process level) distributed memory parallelization. Trace utilizes a special data structure called replicated reconstruction object to maximize application performance. We also present the optimizations we have done on the replicated reconstruction objects and evaluate them using a shale and a mouse brain sinogram. Our experimental evaluations show that the applied optimizations and parallelization techniques can provide 158x speedup (using 32 compute nodes) over single core configuration, which decreases the reconstruction time of a sinogram (with 4501 projections and 22400 detector resolution) from 12.5 hours to less than 5 minutes per iteration.« less

Trace: a high-throughput tomographic reconstruction engine for large-scale datasets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bicer, Tekin; Gursoy, Doga; Andrade, Vincent De

Here, synchrotron light source and detector technologies enable scientists to perform advanced experiments. These scientific instruments and experiments produce data at such scale and complexity that large-scale computation is required to unleash their full power. One of the widely used data acquisition technique at light sources is Computed Tomography, which can generate tens of GB/s depending on x-ray range. A large-scale tomographic dataset, such as mouse brain, may require hours of computation time with a medium size workstation. In this paper, we present Trace, a data-intensive computing middleware we developed for implementation and parallelization of iterative tomographic reconstruction algorithms. Tracemore » provides fine-grained reconstruction of tomography datasets using both (thread level) shared memory and (process level) distributed memory parallelization. Trace utilizes a special data structure called replicated reconstruction object to maximize application performance. We also present the optimizations we have done on the replicated reconstruction objects and evaluate them using a shale and a mouse brain sinogram. Our experimental evaluations show that the applied optimizations and parallelization techniques can provide 158x speedup (using 32 compute nodes) over single core configuration, which decreases the reconstruction time of a sinogram (with 4501 projections and 22400 detector resolution) from 12.5 hours to less than 5 minutes per iteration.« less

Full-color digitized holography for large-scale holographic 3D imaging of physical and nonphysical objects.

PubMed

Matsushima, Kyoji; Sonobe, Noriaki

2018-01-01

Digitized holography techniques are used to reconstruct three-dimensional (3D) images of physical objects using large-scale computer-generated holograms (CGHs). The object field is captured at three wavelengths over a wide area at high densities. Synthetic aperture techniques using single sensors are used for image capture in phase-shifting digital holography. The captured object field is incorporated into a virtual 3D scene that includes nonphysical objects, e.g., polygon-meshed CG models. The synthetic object field is optically reconstructed as a large-scale full-color CGH using red-green-blue color filters. The CGH has a wide full-parallax viewing zone and reconstructs a deep 3D scene with natural motion parallax.

Tree-Ring Reconstruction of Wet Season Rainfall Totals in the Amazon

NASA Astrophysics Data System (ADS)

Stahle, D. W.; Lopez, L.; Granato-Souza, D.; Barbosa, A. C. M. C.; Torbenson, M.; Villalba, R.; Pereira, G. D. A.; Feng, S.; Schongart, J.; Cook, E. R.

2017-12-01

The Amazon Basin is a globally important center of deep atmospheric convection, energy balance, and biodiversity, but only a handful of weather stations in this vast Basin have recorded rainfall measurements for at least 50 years. The available rainfall and river level observations suggest that the hydrologic cycle in the Amazon may have become amplified in the last 40-years, with more extreme rainfall and streamflow seasonality, deeper droughts, and more severe flooding. These changes in the largest hydrological system on earth may be early evidence of the expected consequences of anthropogenic climate change and deforestation in the coming century. Placing these observed and simulated changes in the context of natural climate variability during the late Holocene is a significant challenge for high-resolution paleoclimatology. We have developed exactly dated and well-replicated annual tree-ring chronologies from two native Amazonian tree species (Cedrela sp and Centrolobium microchaete). These moisture sensitive chronologies have been used to compute two reconstructions of wet season rainfall totals, one in the southern Amazon based on Centrolobium and another in the eastern equatorial Amazon using Cedrela. Both reconstructions are over 200-years long and extend the available instrumental observations in each region by over 150-years. These reconstructions are well correlated with the same regional and large-scale climate dynamics that govern the inter-annual variability of the instrumental wet season rainfall totals. Increased multi-decadal variability is reconstructed after 1950 with the Centrolobium chronologies in the southern Amazon. The Cedrela reconstruction from the eastern Amazon exhibits changes in the spatial pattern of correlation with regional rainfall stations and the large-scale sea surface temperature field after 1990 that may be consistent with recent changes in the mean position of the Inter-Tropical Convergence Zone in March over the western Atlantic and South American sector.

An efficient photogrammetric stereo matching method for high-resolution images

NASA Astrophysics Data System (ADS)

Li, Yingsong; Zheng, Shunyi; Wang, Xiaonan; Ma, Hao

2016-12-01

Stereo matching of high-resolution images is a great challenge in photogrammetry. The main difficulty is the enormous processing workload that involves substantial computing time and memory consumption. In recent years, the semi-global matching (SGM) method has been a promising approach for solving stereo problems in different data sets. However, the time complexity and memory demand of SGM are proportional to the scale of the images involved, which leads to very high consumption when dealing with large images. To solve it, this paper presents an efficient hierarchical matching strategy based on the SGM algorithm using single instruction multiple data instructions and structured parallelism in the central processing unit. The proposed method can significantly reduce the computational time and memory required for large scale stereo matching. The three-dimensional (3D) surface is reconstructed by triangulating and fusing redundant reconstruction information from multi-view matching results. Finally, three high-resolution aerial date sets are used to evaluate our improvement. Furthermore, precise airborne laser scanner data of one data set is used to measure the accuracy of our reconstruction. Experimental results demonstrate that our method remarkably outperforms in terms of time and memory savings while maintaining the density and precision of the 3D cloud points derived.

Can Regional Climate Models be used in the assessment of vulnerability and risk caused by extreme events?

NASA Astrophysics Data System (ADS)

Nunes, Ana

2015-04-01

Extreme meteorological events played an important role in catastrophic occurrences observed in the past over densely populated areas in Brazil. This motived the proposal of an integrated system for analysis and assessment of vulnerability and risk caused by extreme events in urban areas that are particularly affected by complex topography. That requires a multi-scale approach, which is centered on a regional modeling system, consisting of a regional (spectral) climate model coupled to a land-surface scheme. This regional modeling system employs a boundary forcing method based on scale-selective bias correction and assimilation of satellite-based precipitation estimates. Scale-selective bias correction is a method similar to the spectral nudging technique for dynamical downscaling that allows internal modes to develop in agreement with the large-scale features, while the precipitation assimilation procedure improves the modeled deep-convection and drives the land-surface scheme variables. Here, the scale-selective bias correction acts only on the rotational part of the wind field, letting the precipitation assimilation procedure to correct moisture convergence, in order to reconstruct South American current climate within the South American Hydroclimate Reconstruction Project. The hydroclimate reconstruction outputs might eventually produce improved initial conditions for high-resolution numerical integrations in metropolitan regions, generating more reliable short-term precipitation predictions, and providing accurate hidrometeorological variables to higher resolution geomorphological models. Better representation of deep-convection from intermediate scales is relevant when the resolution of the regional modeling system is refined by any method to meet the scale of geomorphological dynamic models of stability and mass movement, assisting in the assessment of risk areas and estimation of terrain stability over complex topography. The reconstruction of past extreme events also helps the development of a system for decision-making, regarding natural and social disasters, and reducing impacts. Numerical experiments using this regional modeling system successfully modeled severe weather events in Brazil. Comparisons with the NCEP Climate Forecast System Reanalysis outputs were made at resolutions of about 40- and 25-km of the regional climate model.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spagliardi, Fabio

Liquid argon Time Projection Chambers (LArTPCs) are becoming widely used as neutrino detectors because of their image-like event reconstruction which enables precision neutrino measurements. They primarily use ionisation charge to reconstruct neutrino events. It has been shown, however, that the scintillation light emitted by liquid argon could be exploited to improve their performance. As the neutrino measurements planned in the near future require large-scale experiments, their construction presents challenges in terms of both charge and light collection. In this dissertation we present solutions developed to improve the performance in both aspects of these detectors. We present a new wire tensioningmore » measurement method that allows a remote measurement of the tension of the large number wires that constitute the TPC anode. We also discuss the development and installation of WLS-compound covered foils for the SBND neutrino detector at Fermilab, which is a technique proposed t o augment light collection in LArTPCs. This included preparing a SBND-like mesh cathode and testing it in the Run III of LArIAT, a test beam detector also located at Fermilab. Finally, we present a study aimed at understanding late scintillation light emitted by recombining positive argon ions using LArIAT data, which could affect large scale surface detectors.« less

Joint Inversion of Phase and Amplitude Data of Surface Waves for North American Upper Mantle

NASA Astrophysics Data System (ADS)

Hamada, K.; Yoshizawa, K.

2015-12-01

For the reconstruction of the laterally heterogeneous upper-mantle structure using surface waves, we generally use phase delay information of seismograms, which represents the average phase velocity perturbation along a ray path, while the amplitude information has been rarely used in the velocity mapping. Amplitude anomalies of surface waves contain a variety of information such as anelastic attenuation, elastic focusing/defocusing, geometrical spreading, and receiver effects. The effects of elastic focusing/defocusing are dependent on the second derivative of phase velocity across the ray path, and thus, are sensitive to shorter-wavelength structure than the conventional phase data. Therefore, suitably-corrected amplitude data of surface waves can be useful for improving the lateral resolution of phase velocity models. In this study, we collect a large-number of inter-station phase velocity and amplitude ratio data for fundamental-mode surface waves with a non-linear waveform fitting between two stations of USArray. The measured inter-station phase velocity and amplitude ratios are then inverted simultaneously for phase velocity maps and local amplification factor at receiver locations in North America. The synthetic experiments suggest that, while the phase velocity maps derived from phase data only reflect large-scale tectonic features, those from phase and amplitude data tend to exhibit better recovery of the strength of velocity perturbations, which emphasizes local-scale tectonic features with larger lateral velocity gradients; e.g., slow anomalies in Snake River Plain and Rio Grande Rift, where significant local amplification due to elastic focusing are observed. Also, the spatial distribution of receiver amplification factor shows a clear correlation with the velocity structure. Our results indicate that inter-station amplitude-ratio data can be of help in reconstructing shorter-wavelength structures of the upper mantle.

Probabilistic precipitation and temperature downscaling of the Twentieth Century Reanalysis over France

DOE Office of Scientific and Technical Information (OSTI.GOV)

Caillouet, Laurie; Vidal, Jean -Philippe; Sauquet, Eric

This work proposes a daily high-resolution probabilistic reconstruction of precipitation and temperature fields in France over the 1871–2012 period built on the NOAA Twentieth Century global extended atmospheric reanalysis (20CR). The objective is to fill in the spatial and temporal data gaps in surface observations in order to improve our knowledge on the local-scale climate variability from the late nineteenth century onwards. The SANDHY (Stepwise ANalogue Downscaling method for HYdrology) statistical downscaling method, initially developed for quantitative precipitation forecast, is used here to bridge the scale gap between large-scale 20CR predictors and local-scale predictands from the Safran high-resolution near-surface reanalysis,more » available from 1958 onwards only. SANDHY provides a daily ensemble of 125 analogue dates over the 1871–2012 period for 608 climatically homogeneous zones paving France. Large precipitation biases in intermediary seasons are shown to occur in regions with high seasonal asymmetry like the Mediterranean. Moreover, winter and summer temperatures are respectively over- and under-estimated over the whole of France. Two analogue subselection methods are therefore developed with the aim of keeping the structure of the SANDHY method unchanged while reducing those seasonal biases. The calendar selection keeps the analogues closest to the target calendar day. The stepwise selection applies two new analogy steps based on similarity of the sea surface temperature (SST) and the large-scale 2 m temperature ( T). Comparisons to the Safran reanalysis over 1959–2007 and to homogenized series over the whole twentieth century show that biases in the interannual cycle of precipitation and temperature are reduced with both methods. The stepwise subselection moreover leads to a large improvement of interannual correlation and reduction of errors in seasonal temperature time series. When the calendar subselection is an easily applicable method suitable in a quantitative precipitation forecast context, the stepwise subselection method allows for potential season shifts and SST trends and is therefore better suited for climate reconstructions and climate change studies. Furthermore, the probabilistic downscaling of 20CR over the period 1871–2012 with the SANDHY probabilistic downscaling method combined with the stepwise subselection thus constitutes a perfect framework for assessing the recent observed meteorological events but also future events projected by climate change impact studies and putting them in a historical perspective.« less

Probabilistic precipitation and temperature downscaling of the Twentieth Century Reanalysis over France

DOE PAGES

Caillouet, Laurie; Vidal, Jean -Philippe; Sauquet, Eric; ...

2016-03-16

This work proposes a daily high-resolution probabilistic reconstruction of precipitation and temperature fields in France over the 1871–2012 period built on the NOAA Twentieth Century global extended atmospheric reanalysis (20CR). The objective is to fill in the spatial and temporal data gaps in surface observations in order to improve our knowledge on the local-scale climate variability from the late nineteenth century onwards. The SANDHY (Stepwise ANalogue Downscaling method for HYdrology) statistical downscaling method, initially developed for quantitative precipitation forecast, is used here to bridge the scale gap between large-scale 20CR predictors and local-scale predictands from the Safran high-resolution near-surface reanalysis,more » available from 1958 onwards only. SANDHY provides a daily ensemble of 125 analogue dates over the 1871–2012 period for 608 climatically homogeneous zones paving France. Large precipitation biases in intermediary seasons are shown to occur in regions with high seasonal asymmetry like the Mediterranean. Moreover, winter and summer temperatures are respectively over- and under-estimated over the whole of France. Two analogue subselection methods are therefore developed with the aim of keeping the structure of the SANDHY method unchanged while reducing those seasonal biases. The calendar selection keeps the analogues closest to the target calendar day. The stepwise selection applies two new analogy steps based on similarity of the sea surface temperature (SST) and the large-scale 2 m temperature ( T). Comparisons to the Safran reanalysis over 1959–2007 and to homogenized series over the whole twentieth century show that biases in the interannual cycle of precipitation and temperature are reduced with both methods. The stepwise subselection moreover leads to a large improvement of interannual correlation and reduction of errors in seasonal temperature time series. When the calendar subselection is an easily applicable method suitable in a quantitative precipitation forecast context, the stepwise subselection method allows for potential season shifts and SST trends and is therefore better suited for climate reconstructions and climate change studies. Furthermore, the probabilistic downscaling of 20CR over the period 1871–2012 with the SANDHY probabilistic downscaling method combined with the stepwise subselection thus constitutes a perfect framework for assessing the recent observed meteorological events but also future events projected by climate change impact studies and putting them in a historical perspective.« less

Line segment extraction for large scale unorganized point clouds

NASA Astrophysics Data System (ADS)

Lin, Yangbin; Wang, Cheng; Cheng, Jun; Chen, Bili; Jia, Fukai; Chen, Zhonggui; Li, Jonathan

2015-04-01

Line segment detection in images is already a well-investigated topic, although it has received considerably less attention in 3D point clouds. Benefiting from current LiDAR devices, large-scale point clouds are becoming increasingly common. Most human-made objects have flat surfaces. Line segments that occur where pairs of planes intersect give important information regarding the geometric content of point clouds, which is especially useful for automatic building reconstruction and segmentation. This paper proposes a novel method that is capable of accurately extracting plane intersection line segments from large-scale raw scan points. The 3D line-support region, namely, a point set near a straight linear structure, is extracted simultaneously. The 3D line-support region is fitted by our Line-Segment-Half-Planes (LSHP) structure, which provides a geometric constraint for a line segment, making the line segment more reliable and accurate. We demonstrate our method on the point clouds of large-scale, complex, real-world scenes acquired by LiDAR devices. We also demonstrate the application of 3D line-support regions and their LSHP structures on urban scene abstraction.

Does using different modern climate datasets impact pollen-based paleoclimate reconstructions in North America during the past 2,000 years

NASA Astrophysics Data System (ADS)

Ladd, Matthew; Viau, Andre

2013-04-01

Paleoclimate reconstructions rely on the accuracy of modern climate datasets for calibration of fossil records under the assumption of climate normality through time, which means that the modern climate operates in a similar manner as over the past 2,000 years. In this study, we show how using different modern climate datasets have an impact on a pollen-based reconstruction of mean temperature of the warmest month (MTWA) during the past 2,000 years for North America. The modern climate datasets used to explore this research question include the: Whitmore et al., (2005) modern climate dataset; North American Regional Reanalysis (NARR); National Center For Environmental Prediction (NCEP); European Center for Medium Range Weather Forecasting (ECMWF) ERA-40 reanalysis; WorldClim, Global Historical Climate Network (GHCN) and New et al., which is derived from the CRU dataset. Results show that some caution is advised in using the reanalysis data on large-scale reconstructions. Station data appears to dampen out the variability of the reconstruction produced using station based datasets. The reanalysis or model-based datasets are not recommended for paleoclimate large-scale North American reconstructions as they appear to lack some of the dynamics observed in station datasets (CRU) which resulted in warm-biased reconstructions as compared to the station-based reconstructions. The Whitmore et al. (2005) modern climate dataset appears to be a compromise between CRU-based datasets and model-based datasets except for the ERA-40. In addition, an ultra-high resolution gridded climate dataset such as WorldClim may only be useful if the pollen calibration sites in North America have at least the same spatial precision. We reconstruct the MTWA to within +/-0.01°C by using an average of all curves derived from the different modern climate datasets, demonstrating the robustness of the procedure used. It may be that the use of an average of different modern datasets may reduce the impact of uncertainty of paleoclimate reconstructions, however, this is yet to be determined with certainty. Future evaluation using for example the newly developed Berkeley earth surface temperature datasets should be tested against the paleoclimate record.

Reconstruction of Arctic surface temperature in past 100 years using DINEOF

NASA Astrophysics Data System (ADS)

Zhang, Qiyi; Huang, Jianbin; Luo, Yong

2015-04-01

Global annual mean surface temperature has not risen apparently since 1998, which is described as global warming hiatus in recent years. However, measuring of temperature variability in Arctic is difficult because of large gaps in coverage of Arctic region in most observed gridded datasets. Since Arctic has experienced a rapid temperature change in recent years that called polar amplification, and temperature risen in Arctic is faster than global mean, the unobserved temperature in central Arctic will result in cold bias in both global and Arctic temperature measurement compared with model simulations and reanalysis datasets. Moreover, some datasets that have complete coverage in Arctic but short temporal scale cannot show Arctic temperature variability for long time. Data Interpolating Empirical Orthogonal Function (DINEOF) were applied to fill the coverage gap of NASA's Goddard Institute for Space Studies Surface Temperature Analysis (GISTEMP 250km smooth) product in Arctic with IABP dataset which covers entire Arctic region between 1979 and 1998, and to reconstruct Arctic temperature in 1900-2012. This method provided temperature reconstruction in central Arctic and precise estimation of both global and Arctic temperature variability with a long temporal scale. Results have been verified by extra independent station records in Arctic by statistical analysis, such as variance and standard deviation. The result of reconstruction shows significant warming trend in Arctic in recent 30 years, as the temperature trend in Arctic since 1997 is 0.76°C per decade, compared with 0.48°C and 0.67°C per decade from 250km smooth and 1200km smooth of GISTEMP. And global temperature trend is two times greater after using DINEOF. The discrepancies above stress the importance of fully consideration of temperature variance in Arctic because gaps of coverage in Arctic cause apparent cold bias in temperature estimation. The result of global surface temperature also proves that global warming in recent years is not as slow as thought.

Reconstructions of solar irradiance on centennial time scales

NASA Astrophysics Data System (ADS)

Krivova, Natalie; Solanki, Sami K.; Dasi Espuig, Maria; Kok Leng, Yeo

Solar irradiance is the main external source of energy to Earth's climate system. The record of direct measurements covering less than 40 years is too short to study solar influence on Earth's climate, which calls for reconstructions of solar irradiance into the past with the help of appropriate models. An obvious requirement to a competitive model is its ability to reproduce observed irradiance changes, and a successful example of such a model is presented by the SATIRE family of models. As most state-of-the-art models, SATIRE assumes that irradiance changes on time scales longer than approximately a day are caused by the evolving distribution of dark and bright magnetic features on the solar surface. The surface coverage by such features as a function of time is derived from solar observations. The choice of these depends on the time scale in question. Most accurate is the version of the model that employs full-disc spatially-resolved solar magnetograms and reproduces over 90% of the measured irradiance variation, including the overall decreasing trend in the total solar irradiance over the last four cycles. Since such magnetograms are only available for about four decades, reconstructions on time scales of centuries have to rely on disc-integrated proxies of solar magnetic activity, such as sunspot areas and numbers. Employing a surface flux transport model and sunspot observations as input, we have being able to produce synthetic magnetograms since 1700. This improves the temporal resolution of the irradiance reconstructions on centennial time scales. The most critical aspect of such reconstructions remains the uncertainty in the magnitude of the secular change.

Extreme 3D reconstruction of the final ROSETTA/PHILAE landing site

NASA Astrophysics Data System (ADS)

Capanna, Claire; Jorda, Laurent; Lamy, Philippe; Gesquiere, Gilles; Delmas, Cédric; Durand, Joelle; Garmier, Romain; Gaudon, Philippe; Jurado, Eric

2016-04-01

The Philae lander aboard the Rosetta spacecraft successfully landed at the surface of comet 67P/Churyumov-Gerasimenko (hereafter 67P/C-G) after two rebounds on November 12, 2014. The final landing site, now known as « Abydos », has been identified on images acquired by the OSIRIS imaging system onboard the Rosetta orbiter[1]. The available images of Abydos are very limited in number and reveal a very extreme topography containing cliffs and overhangs. Furthermore, the surface is only observed under very high incidence angles of 60° on average, which implies that the images also exhibit lots of cast shadows. This makes it very difficult to reconstruct the 3D topography with standard methods such as photogrammetry or standard clinometry. We apply a new method called ''Multiresolution PhotoClinometry by Deformation'' (MPCD, [2]) to retrieve the 3D topography of the area around Abydos. The method works in two main steps: (i) a DTM of this region is extracted from a low resolution MPCD global shape model of comet 67P/C-G, and (ii) the resulting triangular mesh is progressively deformed at increasing spatial sampling down to 0.25 m in order to match a set of 14 images of Abydos with projected pixel scales between 1 and 8 m. The method used to perform the image matching is a quasi-Newton non-linear optimization method called L-BFGS-b[3] especially suited to large-scale problems. Finally, we also checked the compatibility of the final MPCD digital terrain model with a set of five panoramic images obtained by the CIVA-P instrument aboard Philae[4]. [1] Lamy et al., 2016, submitted. [2] Capanna et al., Three dimensional reconstruction using multiresoluton photoclinometry by deformation, The visual Computer, v. 29(6-8) pp. 825-835, 2013. [3] Morales et al., Remark on "Algorithm 778: L-BFGS-B: Fortran subroutines for large-scale bound constrained optimization", v.38(1) pp.1-4, ACM Trans. Math. Softw., 2011 [4] Bibring et al., 67P/Churyumov-Gerasimenko surface properties as derived from CIVA panoramic images, Science, v. 349(6247), 2015

On the role of mobile nanoclusters in 2D island nucleation on Si(111)-(7 × 7) surface

NASA Astrophysics Data System (ADS)

Rogilo, D. I.; Fedina, L. I.; Kosolobov, S. S.; Latyshev, A. V.

2018-01-01

Two-dimensional (2D) Si island nucleation has been studied by in situ reflection electron microscopy within a wide temperature range (650-1090 °C ) on large-scale (∼10-100 μm) terraces to exclude the impact of step permeability and adatom sink to steps. The dependence of 2D island concentration N2D on substrate temperature T and Si deposition rate R displays N2D∝Rχexp (E2D/kT) scaling which parameters change from χ≈0.81, E2D≈1.02 eV to χ≈0.5, E2D≈1.8 eV when Si(111) surface converts from (1 × 1) structure to (7 × 7) reconstruction. We propose that this strong E2D rise accompanied by χ reduction is caused by the change of dominating diffusing particles from adatoms to reconstruction induced nanoclusters. Using a rate-equation model developed to account the dynamics of both diffusing species on the Si(111)-(7 × 7) surface, we show that a stable nucleus of a 2D island appears when two mobile nanoclusters merge together while nucleation kinetics is limited by their attachment to island edges.

Quantitative characterization of surface topography using spectral analysis

NASA Astrophysics Data System (ADS)

Jacobs, Tevis D. B.; Junge, Till; Pastewka, Lars

2017-03-01

Roughness determines many functional properties of surfaces, such as adhesion, friction, and (thermal and electrical) contact conductance. Recent analytical models and simulations enable quantitative prediction of these properties from knowledge of the power spectral density (PSD) of the surface topography. The utility of the PSD is that it contains statistical information that is unbiased by the particular scan size and pixel resolution chosen by the researcher. In this article, we first review the mathematical definition of the PSD, including the one- and two-dimensional cases, and common variations of each. We then discuss strategies for reconstructing an accurate PSD of a surface using topography measurements at different size scales. Finally, we discuss detecting and mitigating artifacts at the smallest scales, and computing upper/lower bounds on functional properties obtained from models. We accompany our discussion with virtual measurements on computer-generated surfaces. This discussion summarizes how to analyze topography measurements to reconstruct a reliable PSD. Analytical models demonstrate the potential for tuning functional properties by rationally tailoring surface topography—however, this potential can only be achieved through the accurate, quantitative reconstruction of the PSDs of real-world surfaces.

Full-color large-scaled computer-generated holograms using RGB color filters.

PubMed

Tsuchiyama, Yasuhiro; Matsushima, Kyoji

2017-02-06

A technique using RGB color filters is proposed for creating high-quality full-color computer-generated holograms (CGHs). The fringe of these CGHs is composed of more than a billion pixels. The CGHs reconstruct full-parallax three-dimensional color images with a deep sensation of depth caused by natural motion parallax. The simulation technique as well as the principle and challenges of high-quality full-color reconstruction are presented to address the design of filter properties suitable for large-scaled CGHs. Optical reconstructions of actual fabricated full-color CGHs are demonstrated in order to verify the proposed techniques.

Surface premelting/recrystallization governing the collapse of open-cell nanoporous Cu via thermal annealing.

PubMed

Wang, L; Zhang, X M; Deng, L; Tang, J F; Xiao, S F; Deng, H Q; Hu, W Y

2018-06-04

We systematically investigate the collapse of a set of open-cell nanoporous Cu (np-Cu) materials with the same porosity and shape but different specific surface areas, during thermal annealing, by performing large-scale molecular dynamics simulations. Two mechanisms govern the collapse of np-Cu. One is direct surface premelting, facilitating the collapse of np-Cu, when the specific surface area is less than a critical value (∼2.38 nm-1). The other is recrystallization followed by surface premelting, accelerating the sloughing of ligaments and the annihilation of voids, when the critical specific surface area is exceeded. Surface premelting results from surface reconstruction by prompting localized "disordering" and "chaos" on the surface, and the melting temperature reduces linearly with the increase of the specific surface area. Recrystallization is followed by surface premelting as the melting temperature is below the supercooling point, where a liquid is unstable and instantaneously recrystallizes.

Unidirectionally aligned line patterns driven by entropic effects on faceted surfaces

PubMed Central

Hong, Sung Woo; Huh, June; Gu, Xiaodan; Lee, Dong Hyun; Jo, Won Ho; Park, Soojin; Xu, Ting; Russell, Thomas P.

2012-01-01

A simple, versatile approach to the directed self-assembly of block copolymers into a macroscopic array of unidirectionally aligned cylindrical microdomains on reconstructed faceted single crystal surfaces or on flexible, inexpensive polymeric replicas was discovered. High fidelity transfer of the line pattern generated from the microdomains to a master mold is also shown. A single-grained line patterns over arbitrarily large surface areas without the use of top-down techniques is demonstrated, which has an order parameter typically in excess of 0.97 and a slope error of 1.1 deg. This degree of perfection, produced in a short time period, has yet to be achieved by any other methods. The exceptional alignment arises from entropic penalties of chain packing in the facets coupled with the bending modulus of the cylindrical microdomains. This is shown, theoretically, to be the lowest energy state. The atomic crystalline ordering of the substrate is transferred, over multiple length scales, to the block copolymer microdomains, opening avenues to large-scale roll-to-roll type and nanoimprint processing of perfectly patterned surfaces and as templates and scaffolds for magnetic storage media, polarizing devices, and nanowire arrays. PMID:22307591

Quantitative fractography by digital image processing: NIH Image macro tools for stereo pair analysis and 3-D reconstruction.

PubMed

Hein, L R

2001-10-01

A set of NIH Image macro programs was developed to make qualitative and quantitative analyses from digital stereo pictures produced by scanning electron microscopes. These tools were designed for image alignment, anaglyph representation, animation, reconstruction of true elevation surfaces, reconstruction of elevation profiles, true-scale elevation mapping and, for the quantitative approach, surface area and roughness calculations. Limitations on time processing, scanning techniques and programming concepts are also discussed.

NR-code: Nonlinear reconstruction code

NASA Astrophysics Data System (ADS)

Yu, Yu; Pen, Ue-Li; Zhu, Hong-Ming

2018-04-01

NR-code applies nonlinear reconstruction to the dark matter density field in redshift space and solves for the nonlinear mapping from the initial Lagrangian positions to the final redshift space positions; this reverses the large-scale bulk flows and improves the precision measurement of the baryon acoustic oscillations (BAO) scale.

Comparisons of ionospheric electron density distributions reconstructed by GPS computerized tomography, backscatter ionograms, and vertical ionograms

NASA Astrophysics Data System (ADS)

Zhou, Chen; Lei, Yong; Li, Bofeng; An, Jiachun; Zhu, Peng; Jiang, Chunhua; Zhao, Zhengyu; Zhang, Yuannong; Ni, Binbin; Wang, Zemin; Zhou, Xuhua

2015-12-01

Global Positioning System (GPS) computerized ionosphere tomography (CIT) and ionospheric sky wave ground backscatter radar are both capable of measuring the large-scale, two-dimensional (2-D) distributions of ionospheric electron density (IED). Here we report the spatial and temporal electron density results obtained by GPS CIT and backscatter ionogram (BSI) inversion for three individual experiments. Both the GPS CIT and BSI inversion techniques demonstrate the capability and the consistency of reconstructing large-scale IED distributions. To validate the results, electron density profiles obtained from GPS CIT and BSI inversion are quantitatively compared to the vertical ionosonde data, which clearly manifests that both methods output accurate information of ionopsheric electron density and thereby provide reliable approaches to ionospheric soundings. Our study can improve current understanding of the capability and insufficiency of these two methods on the large-scale IED reconstruction.

Surface Temperature Reconstructions for the Last 1000 Years

NASA Astrophysics Data System (ADS)

North, G. R.

2006-12-01

This is a presentation of results from a recently released report written by a committee established by the National Research Council and chaired by the speaker. The report was titled the same as the title of this talk. It focused on the methods of reconstructing the large scales of such surface temperature fields, since there has been considerable discussion in the scientific literature, assessments such as the IPCC, the popular press, blogs and even Congressional Hearings. The so-called `hockey stick' curve indicating a gradual cooling from the beginning of the record at about 1000AD to roughly 150 years ago when the curve take a steep upward trend (the so-called global warming). The original publications by Mann, Bradley and Hughes were careful to present and emphasize error margins that have been ignored by many in the controversy. The Committee found that numerous subsequent publications have reported reconstructions that utilized different data and different statistical assumptions. These all fall within the error margins of the original studies. While the committee has some reservations about the period prior to the year 1600AD, it still concludes that it is plausible that surface temperatures averaged over the Northern Hemisphere over the last three decades are plausibly the warmest for any such comparable period in the last 1000 years.

Reducing computational costs in large scale 3D EIT by using a sparse Jacobian matrix with block-wise CGLS reconstruction.

PubMed

Yang, C L; Wei, H Y; Adler, A; Soleimani, M

2013-06-01

Electrical impedance tomography (EIT) is a fast and cost-effective technique to provide a tomographic conductivity image of a subject from boundary current-voltage data. This paper proposes a time and memory efficient method for solving a large scale 3D EIT inverse problem using a parallel conjugate gradient (CG) algorithm. The 3D EIT system with a large number of measurement data can produce a large size of Jacobian matrix; this could cause difficulties in computer storage and the inversion process. One of challenges in 3D EIT is to decrease the reconstruction time and memory usage, at the same time retaining the image quality. Firstly, a sparse matrix reduction technique is proposed using thresholding to set very small values of the Jacobian matrix to zero. By adjusting the Jacobian matrix into a sparse format, the element with zeros would be eliminated, which results in a saving of memory requirement. Secondly, a block-wise CG method for parallel reconstruction has been developed. The proposed method has been tested using simulated data as well as experimental test samples. Sparse Jacobian with a block-wise CG enables the large scale EIT problem to be solved efficiently. Image quality measures are presented to quantify the effect of sparse matrix reduction in reconstruction results.

Surface reconstruction of InAs (001) depending on the pressure and temperature examined by density functional thermodynamics.

PubMed

Yeu, In Won; Park, Jaehong; Han, Gyuseung; Hwang, Cheol Seong; Choi, Jung-Hae

2017-09-06

A detailed understanding of the atomic configuration of the compound semiconductor surface, especially after reconstruction, is very important for the device fabrication and performance. While there have been numerous experimental studies using the scanning probe techniques, further theoretical studies on surface reconstruction are necessary to promote the clear understanding of the origins and development of such subtle surface structures. In this work, therefore, a pressure-temperature surface reconstruction diagram was constructed for the model case of the InAs (001) surface considering both the vibrational entropy and configurational entropy based on the density functional theory. Notably, the equilibrium fraction of various reconstructions was determined as a function of the pressure and temperature, not as a function of the chemical potential, which largely facilitated the direct comparison with the experiments. By taking into account the entropy effects, the coexistence of the multiple reconstructions and the fractional change of each reconstruction by the thermodynamic condition were predicted and were in agreement with the previous experimental observations. This work provides the community with a useful framework for such type of theoretical studies.

Testing the gravitational instability hypothesis?

NASA Technical Reports Server (NTRS)

Babul, Arif; Weinberg, David H.; Dekel, Avishai; Ostriker, Jeremiah P.

1994-01-01

We challenge a widely accepted assumption of observational cosmology: that successful reconstruction of observed galaxy density fields from measured galaxy velocity fields (or vice versa), using the methods of gravitational instability theory, implies that the observed large-scale structures and large-scale flows were produced by the action of gravity. This assumption is false, in that there exist nongravitational theories that pass the reconstruction tests and gravitational theories with certain forms of biased galaxy formation that fail them. Gravitational instability theory predicts specific correlations between large-scale velocity and mass density fields, but the same correlations arise in any model where (a) structures in the galaxy distribution grow from homogeneous initial conditions in a way that satisfies the continuity equation, and (b) the present-day velocity field is irrotational and proportional to the time-averaged velocity field. We demonstrate these assertions using analytical arguments and N-body simulations. If large-scale structure is formed by gravitational instability, then the ratio of the galaxy density contrast to the divergence of the velocity field yields an estimate of the density parameter Omega (or, more generally, an estimate of beta identically equal to Omega(exp 0.6)/b, where b is an assumed constant of proportionality between galaxy and mass density fluctuations. In nongravitational scenarios, the values of Omega or beta estimated in this way may fail to represent the true cosmological values. However, even if nongravitational forces initiate and shape the growth of structure, gravitationally induced accelerations can dominate the velocity field at late times, long after the action of any nongravitational impulses. The estimated beta approaches the true value in such cases, and in our numerical simulations the estimated beta values are reasonably accurate for both gravitational and nongravitational models. Reconstruction tests that show correlations between galaxy density and velocity fields can rule out some physically interesting models of large-scale structure. In particular, successful reconstructions constrain the nature of any bias between the galaxy and mass distributions, since processes that modulate the efficiency of galaxy formation on large scales in a way that violates the continuity equation also produce a mismatch between the observed galaxy density and the density inferred from the peculiar velocity field. We obtain successful reconstructions for a gravitational model with peaks biasing, but we also show examples of gravitational and nongravitational models that fail reconstruction tests because of more complicated modulations of galaxy formation.

Fusion of sensor geometry into additive strain fields measured with sensing skin

NASA Astrophysics Data System (ADS)

Downey, Austin; Sadoughi, Mohammadkazem; Laflamme, Simon; Hu, Chao

2018-07-01

Recently, numerous studies have been conducted on flexible skin-like membranes for the cost effective monitoring of large-scale structures. The authors have proposed a large-area electronic consisting of a soft elastomeric capacitor (SEC) that transduces a structure’s strain into a measurable change in capacitance. Arranged in a network configuration, SECs deployed onto the surface of a structure could be used to reconstruct strain maps. Several regression methods have been recently developed with the purpose of reconstructing such maps, but all these algorithms assumed that each SEC-measured strain located at its geometric center. This assumption may not be realistic since an SEC measures the average strain value of the whole area covered by the sensor. One solution is to reduce the size of each SEC, but this would also increase the number of required sensors needed to cover the large-scale structure, therefore increasing the need for the power and data acquisition capabilities. Instead, this study proposes an algorithm that accounts for the sensor’s strain averaging feature by adjusting the strain measurements and constructing a full-field strain map using the kriging interpolation method. The proposed algorithm fuses the geometry of an SEC sensor into the strain map reconstruction in order to adaptively adjust the average kriging-estimated strain of the area monitored by the sensor to the signal. Results show that by considering the sensor geometry, in addition to the sensor signal and location, the proposed strain map adjustment algorithm is capable of producing more accurate full-field strain maps than the traditional spatial interpolation method that considered only signal and location.

Approximate registration of point clouds with large scale differences

NASA Astrophysics Data System (ADS)

Novak, D.; Schindler, K.

2013-10-01

3D reconstruction of objects is a basic task in many fields, including surveying, engineering, entertainment and cultural heritage. The task is nowadays often accomplished with a laser scanner, which produces dense point clouds, but lacks accurate colour information, and lacks per-point accuracy measures. An obvious solution is to combine laser scanning with photogrammetric recording. In that context, the problem arises to register the two datasets, which feature large scale, translation and rotation differences. The absence of approximate registration parameters (3D translation, 3D rotation and scale) precludes the use of fine-registration methods such as ICP. Here, we present a method to register realistic photogrammetric and laser point clouds in a fully automated fashion. The proposed method decomposes the registration into a sequence of simpler steps: first, two rotation angles are determined by finding dominant surface normal directions, then the remaining parameters are found with RANSAC followed by ICP and scale refinement. These two steps are carried out at low resolution, before computing a precise final registration at higher resolution.

Development and Verification of a Novel Robot-Integrated Fringe Projection 3D Scanning System for Large-Scale Metrology.

PubMed

Du, Hui; Chen, Xiaobo; Xi, Juntong; Yu, Chengyi; Zhao, Bao

2017-12-12

Large-scale surfaces are prevalent in advanced manufacturing industries, and 3D profilometry of these surfaces plays a pivotal role for quality control. This paper proposes a novel and flexible large-scale 3D scanning system assembled by combining a robot, a binocular structured light scanner and a laser tracker. The measurement principle and system construction of the integrated system are introduced. A mathematical model is established for the global data fusion. Subsequently, a robust method is introduced for the establishment of the end coordinate system. As for hand-eye calibration, the calibration ball is observed by the scanner and the laser tracker simultaneously. With this data, the hand-eye relationship is solved, and then an algorithm is built to get the transformation matrix between the end coordinate system and the world coordinate system. A validation experiment is designed to verify the proposed algorithms. Firstly, a hand-eye calibration experiment is implemented and the computation of the transformation matrix is done. Then a car body rear is measured 22 times in order to verify the global data fusion algorithm. The 3D shape of the rear is reconstructed successfully. To evaluate the precision of the proposed method, a metric tool is built and the results are presented.

Centennial-scale links between Atlantic Ocean dynamics and hydroclimate over the last 4400 years: Insights from the northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Thirumalai, K.; Quinn, T. M.; Okumura, Y.; Richey, J. N.; Partin, J. W.; Poore, R. Z.

2015-12-01

Surface circulation in the Atlantic Ocean is an important mediator of global climate and yet its variability is poorly constrained on centennial timescales. Changes in the Atlantic meridional overturning circulation (AMOC) have been implicated in late Holocene climate variability in the Western Hemisphere, although the relationship between AMOC variability and hydroclimate is uncertain due to the lack of sufficiently highly resolved proxy records. Here we present a replicated reconstruction of sea-surface temperature (SST) and salinity (SSS) from the Garrison Basin in the northern Gulf of Mexico (NGOM) spanning the last 4,400 years to better constrain past sea-surface conditions. We generated time series of paired Mg/Ca (SST proxy) and δ18O (SST and SSS proxy) variations in planktic foraminifer Globigerinoides ruber (white variety) from three multi-cores collected in 2010. Using a Monte Carlo-based technique we produce a stacked record from the three multi-cores and constrain analytical, calibration, chronological, and sampling uncertainties. We apply this technique to existing paired Mg/Ca- δ18O studies in the Gulf of Mexico and Atlantic Ocean to facilitate comparison between time-uncertain proxy reconstructions. The Garrison Basin stack exhibits large centennial-scale variability (σSST~0.6°C; δ18Osw~0.17‰) and indicates a substantially cool (0.9±0.5°C) and fresh (0.26±0.1‰) Little Ice Age (LIA; 1450-1850 A.D.), corroborating extant records from the Gulf of Mexico. Focusing on the last millennium, we analyze a suite of oceanic and terrestrial proxy records to demonstrate a centennial-scale link between salt advection in the Atlantic Ocean, a diagnostic parameter of ocean circulation, and hydroclimate in the adjacent continents. The ensuing multiproxy relationships seem to be consistent with spatial field correlations of limited salinity and rainfall instrumental/reanalysis data, which suggest that NGOM salinity varies with large-scale Atlantic Ocean circulation and continental precipitation. Our results imply significant centennial-scale variability over the late Holocene and are consistent with limited observational analysis indicating a slowdown of AMOC during the LIA.

A Picea crassifolia Tree-Ring Width-Based Temperature Reconstruction for the Mt. Dongda Region, Northwest China, and Its Relationship to Large-Scale Climate Forcing.

PubMed

Liu, Yu; Sun, Changfeng; Li, Qiang; Cai, Qiufang

2016-01-01

The historical May-October mean temperature since 1831 was reconstructed based on tree-ring width of Qinghai spruce (Picea crassifolia Kom.) collected on Mt. Dongda, North of the Hexi Corridor in Northwest China. The regression model explained 46.6% of the variance of the instrumentally observed temperature. The cold periods in the reconstruction were 1831-1889, 1894-1901, 1908-1934 and 1950-1952, and the warm periods were 1890-1893, 1902-1907, 1935-1949 and 1953-2011. During the instrumental period (1951-2011), an obvious warming trend appeared in the last twenty years. The reconstruction displayed similar patterns to a temperature reconstruction from the east-central Tibetan Plateau at the inter-decadal timescale, indicating that the temperature reconstruction in this study was a reliable proxy for Northwest China. It was also found that the reconstruction series had good consistency with the Northern Hemisphere temperature at a decadal timescale. Multi-taper method spectral analysis detected some low- and high-frequency cycles (2.3-2.4-year, 2.8-year, 3.4-3.6-year, 5.0-year, 9.9-year and 27.0-year). Combining these cycles, the relationship of the low-frequency change with the Pacific Decadal Oscillation (PDO), North Atlantic Oscillation (NAO) and Southern Oscillation (SO) suggested that the reconstructed temperature variations may be related to large-scale atmospheric-oceanic variations. Major volcanic eruptions were partly reflected in the reconstructed temperatures after high-pass filtering; these events promoted anomalous cooling in this region. The results of this study not only provide new information for assessing the long-term temperature changes in the Hexi Corridor of Northwest China, but also further demonstrate the effects of large-scale atmospheric-oceanic circulation on climate change in Northwest China.

Probing atomic-scale friction on reconstructed surfaces of single-crystal semiconductors

NASA Astrophysics Data System (ADS)

Goryl, M.; Budzioch, J.; Krok, F.; Wojtaszek, M.; Kolmer, M.; Walczak, L.; Konior, J.; Gnecco, E.; Szymonski, M.

2012-02-01

Friction force microscopy (FFM) investigations have been performed on reconstructed (001) surfaces of InSb and Ge in an ultrahigh vacuum. On the c(8×2) reconstruction of InSb(001) atomic resolution is achieved under superlubric conditions, and the features observed in the lateral force images are precisely reproduced by numerical simulations, taking into account possible decorations of the probing tip. On the simultaneously acquired (1×3) reconstruction a significant disorder of the surface atoms is observed. If the loading force increases, friction becomes much larger on this reconstruction compared to the c(8×2) one. In FFM images acquired on the Ge(001)(2×1) characteristic substructures are resolved within the unit cells. In such a case, a strong dependence of the friction pattern on the scan direction is observed.

Reconstruction of spatial distributions of sound velocity and absorption in soft biological tissues using model ultrasonic tomographic data

NASA Astrophysics Data System (ADS)

Burov, V. A.; Zotov, D. I.; Rumyantseva, O. D.

2014-07-01

A two-step algorithm is used to reconstruct the spatial distributions of the acoustic characteristics of soft biological tissues-the sound velocity and absorption coefficient. Knowing these distributions is urgent for early detection of benign and malignant neoplasms in biological tissues, primarily in the breast. At the first stage, large-scale distributions are estimated; at the second step, they are refined with a high resolution. Results of reconstruction on the base of model initial data are presented. The principal necessity of preliminary reconstruction of large-scale distributions followed by their being taken into account at the second step is illustrated. The use of CUDA technology for processing makes it possible to obtain final images of 1024 × 1024 samples in only a few minutes.

Reconstruction of FY-3B/MWRI soil moisture using an artificial neural network based on reconstructed MODIS optical products over the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Cui, Y.; Long, D.; Hong, Y.; Zeng, C.; Han, Z.

2016-12-01

Reconstruction of FY-3B/MWRI soil moisture using an artificial neural network based on reconstructed MODIS optical products over the Tibetan Plateau Yaokui Cui, Di Long, Yang Hong, Chao Zeng, and Zhongying Han State Key Laboratory of Hydroscience and Engineering, Department of Hydraulic Engineering, Tsinghua University, Beijing 100084, China Abstract: Soil moisture is a key variable in the exchange of water and energy between the land surface and the atmosphere, especially over the Tibetan Plateau (TP) which is climatically and hydrologically sensitive as the world's third pole. Large-scale consistent and continuous soil moisture datasets are of importance to meteorological and hydrological applications, such as weather forecasting and drought monitoring. The Fengyun-3B Microwave Radiation Imager (FY-3B/MWRI) soil moisture product is one of relatively new passive microwave products. The FY-3B/MWRI soil moisture product is reconstructed using the back-propagation neural network (BP-NN) based on reconstructed MODIS products, i.e., LST, NDVI, and albedo using different gap-filling methods. The reconstruction method of generating the soil moisture product not only considers the relationship between the soil moisture and the NDVI, LST, and albedo, but also the relationship between the soil moisture and the four-dimensional variation using the longitude, latitude, DEM and day of year (DOY). Results show that the soil moisture could be well reconstructed with R2 larger than 0.63, and RMSE less than 0.1 cm3 cm-3 and bias less than 0.07 cm3 cm-3 for both frozen and unfrozen periods, compared with in-situ measurements in the central TP. The reconstruction method is subsequently applied to generate spatially consistent and temporally continuous surface soil moisture over the TP. The reconstructed FY-3B/MWRI soil moisture product could be valuable in studying meteorology, hydrology, and agriculture over the TP. Keywords: FY-3B/MWRI; Soil moisture; Reconstruction; Tibetan Plateau

Using coral Ba/Ca records to investigate seasonal to decadal scale biogeochemical cycling in the surface and intermediate ocean.

NASA Astrophysics Data System (ADS)

LaVigne, M.; Cobb, K. M.; DeLong, K. L.; Freiberger, M. M.; Grottoli, A. G.; Hill, T. M.; Miller, H. R.; Nurhati, I. S.; Richey, J. N.; Serrato Marks, G.; Sherrell, R. M.

2016-12-01

Dissolved barium (BaSW), a bio-intermediate element, is linked to several biogeochemical processes such as the cycling and export of nutrients, organic carbon (Corg), and barite in surface and intermediate oceans. Dynamic BaSW cycling has been demonstrated in the water column on short timescales (days-weeks) while sedimentary records have documented geologic-scale changes in barite preservation driven by export production. Our understanding of how seasonal-decadal scale climate variability impacts these biogeochemical processes currently lacks robust records. Ba/Ca calibrations in surface and deep sea corals suggest barium is incorporated via cationic substitution in both aragonite and calcite. Here we demonstrate the utility of Ba/Ca for reconstructing biogeochemical variability using examples of surface and deep sea coral records. Century-long deep sea coral records from the California Current System (bamboo corals: 900-1500m) record interannual variations in Ba/Ca, likely reflecting changes in barite formation via bacterial Corg respiration or barite saturation state. A surface Porites coral Ba/Ca record from Christmas Island (central equatorial Pacific: 1978-1995) shows maxima during low productivity El Niño warm periods, suggesting that variations in BaSW are driven by biological removal via direct cellular uptake or indirectly via barite precipitation with the decomposition of large phytoplankton blooms at this location. Similarly, a sixteen-year long Siderastera siderea surface coral record from Dry Tortugas, FL (Gulf of Mexico: 1991-2007) shows seasonal Ba/Ca cycles that align with annual chlorophyll and δ13C. Taken together, these records demonstrate the linkages among Corg, nutrient cycling and BaSW in the surface and intermediate ocean on seasonal to decadal timescales. Multi-proxy paleoceanographic reconstructions including Ba/Ca have the potential to elucidate the mechanisms linking past climate, productivity, nutrients, and BaSW cycling in the past.

Distributed wavefront reconstruction with SABRE for real-time large scale adaptive optics control

NASA Astrophysics Data System (ADS)

Brunner, Elisabeth; de Visser, Cornelis C.; Verhaegen, Michel

2014-08-01

We present advances on Spline based ABerration REconstruction (SABRE) from (Shack-)Hartmann (SH) wavefront measurements for large-scale adaptive optics systems. SABRE locally models the wavefront with simplex B-spline basis functions on triangular partitions which are defined on the SH subaperture array. This approach allows high accuracy through the possible use of nonlinear basis functions and great adaptability to any wavefront sensor and pupil geometry. The main contribution of this paper is a distributed wavefront reconstruction method, D-SABRE, which is a 2 stage procedure based on decomposing the sensor domain into sub-domains each supporting a local SABRE model. D-SABRE greatly decreases the computational complexity of the method and removes the need for centralized reconstruction while obtaining a reconstruction accuracy for simulated E-ELT turbulences within 1% of the global method's accuracy. Further, a generalization of the methodology is proposed making direct use of SH intensity measurements which leads to an improved accuracy of the reconstruction compared to centroid algorithms using spatial gradients.

Cluster Nucleation and Growth from a Highly Supersaturated Adatom Phase: Silver on Magnetite

PubMed Central

2014-01-01

The atomic-scale mechanisms underlying the growth of Ag on the (√2×√2)R45°-Fe3O4(001) surface were studied using scanning tunneling microscopy and density functional theory based calculations. For coverages up to 0.5 ML, Ag adatoms populate the surface exclusively; agglomeration into nanoparticles occurs only with the lifting of the reconstruction at 720 K. Above 0.5 ML, Ag clusters nucleate spontaneously and grow at the expense of the surrounding material with mild annealing. This unusual behavior results from a kinetic barrier associated with the (√2×√2)R45° reconstruction, which prevents adatoms from transitioning to the thermodynamically favorable 3D phase. The barrier is identified as the large separation between stable adsorption sites, which prevents homogeneous cluster nucleation and the instability of the Ag dimer against decay to two adatoms. Since the system is dominated by kinetics as long as the (√2×√2)R45° reconstruction exists, the growth is not well described by the traditional growth modes. It can be understood, however, as the result of supersaturation within an adsorption template system. PMID:24945923

Shaler: in situ analysis of a fluvial sedimentary deposit on Mars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edgar, Lauren A.; Gupta, Sanjeev; Rubin, David M.

This article characterizes the detailed sedimentology of a fluvial sandbody on Mars for the first time and interprets its depositional processes and palaeoenvironmental setting. Despite numerous orbital observations of fluvial landforms on the surface of Mars, ground-based characterization of the sedimentology of such fluvial deposits has not previously been possible. Results from the NASA Mars Science Laboratory Curiosity rover provide an opportunity to reconstruct at fine scale the sedimentary architecture and palaeomorphology of a fluvial environment on Mars. This work describes the grain size, texture and sedimentary facies of the Shaler outcrop, reconstructs the bedding architecture, and analyses cross-stratification tomore » determine palaeocurrents. On the basis of bedset geometry and inclination, grain-size distribution and bedform migration direction, this study concludes that the Shaler outcrop probably records the accretion of a fluvial barform. The majority of the outcrop consists of large-scale trough cross-bedding of coarse sand and granules. Palaeocurrent analyses and bedform reconstruction indicate that the beds were deposited by bedforms that migrated towards the north-east, across the surface of a bar that migrated south-east. Stacked cosets of dune cross-bedding suggest aggradation of multiple bedforms, which provides evidence for short periods of sustained flow during Shaler deposition. However, local evidence for aeolian reworking and the presence of potential desiccation cracks within the outcrop suggest that fluvial deposition may have been intermittent. The uppermost strata at Shaler are distinct in terms of texture and chemistry and are inferred to record deposition from a different sediment dispersal system with a contrasting provenance. The outcrop as a whole is a testament to the availability of liquid water on the surface of Mars in its early history.« less

Shaler: in situ analysis of a fluvial sedimentary deposit on Mars

USGS Publications Warehouse

Edgar, Lauren; Gupta, Sanjeev; Rubin, David M.; Lewis, Kevin W.; Kocurek, Gary A.; Anderson, Ryan; Bell, James F.; Dromart, Gilles; Edgett, Kenneth S.; Grotzinger, John P.; Hardgrove, Craig; Kah, Linda C.; LeVeille, Richard A.; Malin, Michael C.; Mangold, Nicholas; Milliken, Ralph E.; Minitti, Michelle; Palucis, Marisa C.; Rice, Melissa; Rowland, Scott K.; Schieber, Juergen; Stack, Kathryn M.; Sumner, Dawn Y.; Wiens, Roger C.; Williams, Rebecca M.E.; Williams, Amy J.

2018-01-01

This paper characterizes the detailed sedimentology of a fluvial sandbody on Mars for the first time, and interprets its depositional processes and palaeoenvironmental setting. Despite numerous orbital observations of fluvial landforms on the surface of Mars, ground-based characterization of the sedimentology of such fluvial deposits has not previously been possible. Results from the NASA Mars Science Laboratory Curiosity rover provide an opportunity to reconstruct at fine scale the sedimentary architecture and palaeomorphology of a fluvial environment on Mars. This work describes the grain size, texture, and sedimentary facies of the Shaler outcrop, reconstructs the bedding architecture, and analyses cross-stratification to determine palaeocurrents. On the basis of bedset geometry and inclination, grain-size distribution, and bedform migration direction, this study concludes that the Shaler outcrop likely records the accretion of a fluvial barform. The majority of the outcrop consists of large-scale trough cross-bedding of coarse sand and granules. Palaeocurrent analyses and bedform reconstruction indicate that the beds were deposited by bedforms that migrated towards the northeast, across the surface of a bar that migrated southeast. Stacked cosets of dune cross-bedding suggest aggradation of multiple bedforms, which provides evidence for short periods of sustained flow during Shaler deposition. However, local evidence for aeolian reworking and the presence of potential desiccation cracks within the outcrop suggests that fluvial deposition may have been intermittent. The uppermost strata at Shaler are distinct in terms of texture and chemistry, and are inferred to record deposition from a different sediment dispersal system with a contrasting provenance. The outcrop as a whole is a testament to the availability of liquid water on the surface of Mars in its early history.

Shaler: in situ analysis of a fluvial sedimentary deposit on Mars

DOE PAGES

Edgar, Lauren A.; Gupta, Sanjeev; Rubin, David M.; ...

2017-03-09

This article characterizes the detailed sedimentology of a fluvial sandbody on Mars for the first time and interprets its depositional processes and palaeoenvironmental setting. Despite numerous orbital observations of fluvial landforms on the surface of Mars, ground-based characterization of the sedimentology of such fluvial deposits has not previously been possible. Results from the NASA Mars Science Laboratory Curiosity rover provide an opportunity to reconstruct at fine scale the sedimentary architecture and palaeomorphology of a fluvial environment on Mars. This work describes the grain size, texture and sedimentary facies of the Shaler outcrop, reconstructs the bedding architecture, and analyses cross-stratification tomore » determine palaeocurrents. On the basis of bedset geometry and inclination, grain-size distribution and bedform migration direction, this study concludes that the Shaler outcrop probably records the accretion of a fluvial barform. The majority of the outcrop consists of large-scale trough cross-bedding of coarse sand and granules. Palaeocurrent analyses and bedform reconstruction indicate that the beds were deposited by bedforms that migrated towards the north-east, across the surface of a bar that migrated south-east. Stacked cosets of dune cross-bedding suggest aggradation of multiple bedforms, which provides evidence for short periods of sustained flow during Shaler deposition. However, local evidence for aeolian reworking and the presence of potential desiccation cracks within the outcrop suggest that fluvial deposition may have been intermittent. The uppermost strata at Shaler are distinct in terms of texture and chemistry and are inferred to record deposition from a different sediment dispersal system with a contrasting provenance. The outcrop as a whole is a testament to the availability of liquid water on the surface of Mars in its early history.« less

Three-dimension reconstruction based on spatial light modulator

NASA Astrophysics Data System (ADS)

Deng, Xuejiao; Zhang, Nanyang; Zeng, Yanan; Yin, Shiliang; Wang, Weiyu

2011-02-01

Three-dimension reconstruction, known as an important research direction of computer graphics, is widely used in the related field such as industrial design and manufacture, construction, aerospace, biology and so on. Via such technology we can obtain three-dimension digital point cloud from a two-dimension image, and then simulate the three-dimensional structure of the physical object for further study. At present, the obtaining of three-dimension digital point cloud data is mainly based on the adaptive optics system with Shack-Hartmann sensor and phase-shifting digital holography. Referring to surface fitting, there are also many available methods such as iterated discrete fourier transform, convolution and image interpolation, linear phase retrieval. The main problems we came across in three-dimension reconstruction are the extraction of feature points and arithmetic of curve fitting. To solve such problems, we can, first of all, calculate the relevant surface normal vector information of each pixel in the light source coordinate system, then these vectors are to be converted to the coordinates of image through the coordinate conversion, so the expectant 3D point cloud get arise. Secondly, after the following procedures of de-noising, repairing, the feature points can later be selected and fitted to get the fitting function of the surface topography by means of Zernike polynomial, so as to reconstruct the determinand's three-dimensional topography. In this paper, a new kind of three-dimension reconstruction algorithm is proposed, with the assistance of which, the topography can be estimated from its grayscale at different sample points. Moreover, the previous stimulation and the experimental results prove that the new algorithm has a strong capability to fit, especially for large-scale objects .

Excess Li-Ion Storage on Reconstructed Surfaces of Nanocrystals To Boost Battery Performance

DOE PAGES

Duan, Yandong; Zhang, Bingkai; Zheng, Jiaxin; ...

2017-08-03

Because of their enhanced kinetic properties, nanocrystallites have received much attention as potential electrode materials for energy storage. However, because of the large specific surface areas of nanocrystallites, they usually suffer from decreased energy density, cycling stability, and effective electrode capacity. Here, in this work, we report a size-dependent excess capacity beyond theoretical value (170 mA h g -1) by introducing extra lithium storage at the reconstructed surface in nanosized LiFePO 4 (LFP) cathode materials (186 and 207 mA h g -1 in samples with mean particle sizes of 83 and 42 nm, respectively). Moreover, this LFP composite also showsmore » excellent cycling stability and high rate performance. Our multimodal experimental characterizations and ab initio calculations reveal that the surface extra lithium storage is mainly attributed to the charge passivation of Fe by the surface C–O–Fe bonds, which can enhance binding energy for surface lithium by compensating surface Fe truncated symmetry to create two types of extra positions for Li-ion storage at the reconstructed surfaces. Such surface reconstruction nanotechnology for excess Li-ion storage makes full use of the large specific surface area of the nanocrystallites, which can maintain the fast Li-ion transport and greatly enhance the capacity. Finally, this discovery and nanotechnology can be used for the design of high-capacity and efficient lithium ion batteries.« less

Excess Li-Ion Storage on Reconstructed Surfaces of Nanocrystals To Boost Battery Performance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duan, Yandong; Zhang, Bingkai; Zheng, Jiaxin

Because of their enhanced kinetic properties, nanocrystallites have received much attention as potential electrode materials for energy storage. However, because of the large specific surface areas of nanocrystallites, they usually suffer from decreased energy density, cycling stability, and effective electrode capacity. Here, in this work, we report a size-dependent excess capacity beyond theoretical value (170 mA h g -1) by introducing extra lithium storage at the reconstructed surface in nanosized LiFePO 4 (LFP) cathode materials (186 and 207 mA h g -1 in samples with mean particle sizes of 83 and 42 nm, respectively). Moreover, this LFP composite also showsmore » excellent cycling stability and high rate performance. Our multimodal experimental characterizations and ab initio calculations reveal that the surface extra lithium storage is mainly attributed to the charge passivation of Fe by the surface C–O–Fe bonds, which can enhance binding energy for surface lithium by compensating surface Fe truncated symmetry to create two types of extra positions for Li-ion storage at the reconstructed surfaces. Such surface reconstruction nanotechnology for excess Li-ion storage makes full use of the large specific surface area of the nanocrystallites, which can maintain the fast Li-ion transport and greatly enhance the capacity. Finally, this discovery and nanotechnology can be used for the design of high-capacity and efficient lithium ion batteries.« less

Exploring image data assimilation in the prospect of high-resolution satellite oceanic observations

NASA Astrophysics Data System (ADS)

Durán Moro, Marina; Brankart, Jean-Michel; Brasseur, Pierre; Verron, Jacques

2017-07-01

Satellite sensors increasingly provide high-resolution (HR) observations of the ocean. They supply observations of sea surface height (SSH) and of tracers of the dynamics such as sea surface salinity (SSS) and sea surface temperature (SST). In particular, the Surface Water Ocean Topography (SWOT) mission will provide measurements of the surface ocean topography at very high-resolution (HR) delivering unprecedented information on the meso-scale and submeso-scale dynamics. This study investigates the feasibility to use these measurements to reconstruct meso-scale features simulated by numerical models, in particular on the vertical dimension. A methodology to reconstruct three-dimensional (3D) multivariate meso-scale scenes is developed by using a HR numerical model of the Solomon Sea region. An inverse problem is defined in the framework of a twin experiment where synthetic observations are used. A true state is chosen among the 3D multivariate states which is considered as a reference state. In order to correct a first guess of this true state, a two-step analysis is carried out. A probability distribution of the first guess is defined and updated at each step of the analysis: (i) the first step applies the analysis scheme of a reduced-order Kalman filter to update the first guess probability distribution using SSH observation; (ii) the second step minimizes a cost function using observations of HR image structure and a new probability distribution is estimated. The analysis is extended to the vertical dimension using 3D multivariate empirical orthogonal functions (EOFs) and the probabilistic approach allows the update of the probability distribution through the two-step analysis. Experiments show that the proposed technique succeeds in correcting a multivariate state using meso-scale and submeso-scale information contained in HR SSH and image structure observations. It also demonstrates how the surface information can be used to reconstruct the ocean state below the surface.

Multi-Scale Measures of Rugosity, Slope and Aspect from Benthic Stereo Image Reconstructions

PubMed Central

Friedman, Ariell; Pizarro, Oscar; Williams, Stefan B.; Johnson-Roberson, Matthew

2012-01-01

This paper demonstrates how multi-scale measures of rugosity, slope and aspect can be derived from fine-scale bathymetric reconstructions created from geo-referenced stereo imagery. We generate three-dimensional reconstructions over large spatial scales using data collected by Autonomous Underwater Vehicles (AUVs), Remotely Operated Vehicles (ROVs), manned submersibles and diver-held imaging systems. We propose a new method for calculating rugosity in a Delaunay triangulated surface mesh by projecting areas onto the plane of best fit using Principal Component Analysis (PCA). Slope and aspect can be calculated with very little extra effort, and fitting a plane serves to decouple rugosity from slope. We compare the results of the virtual terrain complexity calculations with experimental results using conventional in-situ measurement methods. We show that performing calculations over a digital terrain reconstruction is more flexible, robust and easily repeatable. In addition, the method is non-contact and provides much less environmental impact compared to traditional survey techniques. For diver-based surveys, the time underwater needed to collect rugosity data is significantly reduced and, being a technique based on images, it is possible to use robotic platforms that can operate beyond diver depths. Measurements can be calculated exhaustively at multiple scales for surveys with tens of thousands of images covering thousands of square metres. The technique is demonstrated on data gathered by a diver-rig and an AUV, on small single-transect surveys and on a larger, dense survey that covers over . Stereo images provide 3D structure as well as visual appearance, which could potentially feed into automated classification techniques. Our multi-scale rugosity, slope and aspect measures have already been adopted in a number of marine science studies. This paper presents a detailed description of the method and thoroughly validates it against traditional in-situ measurements. PMID:23251370

Late Cretaceous climate simulations with different CO2 levels and subarctic gateway configurations: A model-data comparison

NASA Astrophysics Data System (ADS)

Niezgodzki, Igor; Knorr, Gregor; Lohmann, Gerrit; Tyszka, Jarosław; Markwick, Paul J.

2017-09-01

We investigate the impact of different CO2 levels and different subarctic gateway configurations on the surface temperatures during the latest Cretaceous using the Earth System Model COSMOS. The simulated temperatures are compared with the surface temperature reconstructions based on a recent compilation of the latest Cretaceous proxies. In our numerical experiments, the CO2 level ranges from 1 to 6 times the preindustrial (PI) CO2 level of 280 ppm. On a global scale, the most reasonable match between modeling and proxy data is obtained for the experiments with 3 to 5 × PI CO2 concentrations. However, the simulated low- (high-) latitude temperatures are too high (low) as compared to the proxy data. The moderate CO2 levels scenarios might be more realistic, if we take into account proxy data and the dead zone effect criterion. Furthermore, we test if the model-data discrepancies can be caused by too simplistic proxy-data interpretations. This is distinctly seen at high latitudes, where most proxies are biased toward summer temperatures. Additional sensitivity experiments with different ocean gateway configurations and constant CO2 level indicate only minor surface temperatures changes (< 1°C) on a global scale, with higher values (up to 8°C) on a regional scale. These findings imply that modeled and reconstructed temperature gradients are to a large degree only qualitatively comparable, providing challenges for the interpretation of proxy data and/or model sensitivity. With respect to the latter, our results suggest that an assessment of greenhouse worlds is best constrained by temperatures in the midlatitudes.

Reconstructing high-dimensional two-photon entangled states via compressive sensing

PubMed Central

Tonolini, Francesco; Chan, Susan; Agnew, Megan; Lindsay, Alan; Leach, Jonathan

2014-01-01

Accurately establishing the state of large-scale quantum systems is an important tool in quantum information science; however, the large number of unknown parameters hinders the rapid characterisation of such states, and reconstruction procedures can become prohibitively time-consuming. Compressive sensing, a procedure for solving inverse problems by incorporating prior knowledge about the form of the solution, provides an attractive alternative to the problem of high-dimensional quantum state characterisation. Using a modified version of compressive sensing that incorporates the principles of singular value thresholding, we reconstruct the density matrix of a high-dimensional two-photon entangled system. The dimension of each photon is equal to d = 17, corresponding to a system of 83521 unknown real parameters. Accurate reconstruction is achieved with approximately 2500 measurements, only 3% of the total number of unknown parameters in the state. The algorithm we develop is fast, computationally inexpensive, and applicable to a wide range of quantum states, thus demonstrating compressive sensing as an effective technique for measuring the state of large-scale quantum systems. PMID:25306850

Iraq: Reconstruction Assistance

DTIC Science & Technology

2007-06-25

Iraq: Reconstruction Assistance Summary A large-scale assistance program has been undertaken by the United States in Iraq since mid-2003. To date...28, 2004, the entity implementing assistance programs , the Coalition Provisional Authority (CPA), dissolved, and sovereignty was returned to Iraq. U.N...10 U.S. Assistance Policy and Program Structure . . . . . . . . . . . . . . . . . . . . . . . . . . 11 U.S. Reconstruction

Ranking of tree-ring based temperature reconstructions of the past millennium

NASA Astrophysics Data System (ADS)

Esper, Jan; Krusic, Paul J.; Ljungqvist, Fredrik C.; Luterbacher, Jürg; Carrer, Marco; Cook, Ed; Davi, Nicole K.; Hartl-Meier, Claudia; Kirdyanov, Alexander; Konter, Oliver; Myglan, Vladimir; Timonen, Mauri; Treydte, Kerstin; Trouet, Valerie; Villalba, Ricardo; Yang, Bao; Büntgen, Ulf

2016-08-01

Tree-ring chronologies are widely used to reconstruct high-to low-frequency variations in growing season temperatures over centuries to millennia. The relevance of these timeseries in large-scale climate reconstructions is often determined by the strength of their correlation against instrumental temperature data. However, this single criterion ignores several important quantitative and qualitative characteristics of tree-ring chronologies. Those characteristics are (i) data homogeneity, (ii) sample replication, (iii) growth coherence, (iv) chronology development, and (v) climate signal including the correlation with instrumental data. Based on these 5 characteristics, a reconstruction-scoring scheme is proposed and applied to 39 published, millennial-length temperature reconstructions from Asia, Europe, North America, and the Southern Hemisphere. Results reveal no reconstruction scores highest in every category and each has their own strengths and weaknesses. Reconstructions that perform better overall include N-Scan and Finland from Europe, E-Canada from North America, Yamal and Dzhelo from Asia. Reconstructions performing less well include W-Himalaya and Karakorum from Asia, Tatra and S-Finland from Europe, and Great Basin from North America. By providing a comprehensive set of criteria to evaluate tree-ring chronologies we hope to improve the development of large-scale temperature reconstructions spanning the past millennium. All reconstructions and their corresponding scores are provided at http://www.blogs.uni-mainz.de/fb09climatology.

Flip-avoiding interpolating surface registration for skull reconstruction.

PubMed

Xie, Shudong; Leow, Wee Kheng; Lee, Hanjing; Lim, Thiam Chye

2018-03-30

Skull reconstruction is an important and challenging task in craniofacial surgery planning, forensic investigation and anthropological studies. Existing methods typically reconstruct approximating surfaces that regard corresponding points on the target skull as soft constraints, thus incurring non-zero error even for non-defective parts and high overall reconstruction error. This paper proposes a novel geometric reconstruction method that non-rigidly registers an interpolating reference surface that regards corresponding target points as hard constraints, thus achieving low reconstruction error. To overcome the shortcoming of interpolating a surface, a flip-avoiding method is used to detect and exclude conflicting hard constraints that would otherwise cause surface patches to flip and self-intersect. Comprehensive test results show that our method is more accurate and robust than existing skull reconstruction methods. By incorporating symmetry constraints, it can produce more symmetric and normal results than other methods in reconstructing defective skulls with a large number of defects. It is robust against severe outliers such as radiation artifacts in computed tomography due to dental implants. In addition, test results also show that our method outperforms thin-plate spline for model resampling, which enables the active shape model to yield more accurate reconstruction results. As the reconstruction accuracy of defective parts varies with the use of different reference models, we also study the implication of reference model selection for skull reconstruction. Copyright © 2018 John Wiley & Sons, Ltd.

Climate variations in northern North America (6000 BP to present) reconstructed from pollen and tree-ring data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diaz, H.F.; Andrews, J.T.; Short, S.K.

The characteristic anomaly patterns of modern surface temperature and precipitation are compared to tree-ring indices (0-300 yr) and fossil pollen (0-6000 yr) variations in northern North America. The data base consists of 245 climate stations, 55 tree-ring chronologies, 153 modern pollen collections, and 39 fossil pollen sites. A few areas exhibit relatively high climatic sensitivity, displaying generally consistent patterns during alternate warm and cold periods, regardless of time scales. The surface changes are related to the redistribution (i.e., changes in the mean position and strength) of the planetary-scale waves and to north-south shifts in the mean boundary of the Arcticmore » Front. The zone where the largest changes occur is typically located along the mean present-day boundary between Arctic and Pacific airstreams. Establishing plausible relationships between vegetation responses and concomitant changes in atmospheric circulation patterns increases our confidence that the paleoclimatic signals are indeed related to large-scale circulation changes.« less

5D Modelling: An Efficient Approach for Creating Spatiotemporal Predictive 3D Maps of Large-Scale Cultural Resources

NASA Astrophysics Data System (ADS)

Doulamis, A.; Doulamis, N.; Ioannidis, C.; Chrysouli, C.; Grammalidis, N.; Dimitropoulos, K.; Potsiou, C.; Stathopoulou, E.-K.; Ioannides, M.

2015-08-01

Outdoor large-scale cultural sites are mostly sensitive to environmental, natural and human made factors, implying an imminent need for a spatio-temporal assessment to identify regions of potential cultural interest (material degradation, structuring, conservation). On the other hand, in Cultural Heritage research quite different actors are involved (archaeologists, curators, conservators, simple users) each of diverse needs. All these statements advocate that a 5D modelling (3D geometry plus time plus levels of details) is ideally required for preservation and assessment of outdoor large scale cultural sites, which is currently implemented as a simple aggregation of 3D digital models at different time and levels of details. The main bottleneck of such an approach is its complexity, making 5D modelling impossible to be validated in real life conditions. In this paper, a cost effective and affordable framework for 5D modelling is proposed based on a spatial-temporal dependent aggregation of 3D digital models, by incorporating a predictive assessment procedure to indicate which regions (surfaces) of an object should be reconstructed at higher levels of details at next time instances and which at lower ones. In this way, dynamic change history maps are created, indicating spatial probabilities of regions needed further 3D modelling at forthcoming instances. Using these maps, predictive assessment can be made, that is, to localize surfaces within the objects where a high accuracy reconstruction process needs to be activated at the forthcoming time instances. The proposed 5D Digital Cultural Heritage Model (5D-DCHM) is implemented using open interoperable standards based on the CityGML framework, which also allows the description of additional semantic metadata information. Visualization aspects are also supported to allow easy manipulation, interaction and representation of the 5D-DCHM geometry and the respective semantic information. The open source 3DCityDB incorporating a PostgreSQL geo-database is used to manage and manipulate 3D data and their semantics.

Accumulation patterns around Dome C, East Antarctica, in the last 73 kyr

NASA Astrophysics Data System (ADS)

Cavitte, Marie G. P.; Parrenin, Frédéric; Ritz, Catherine; Young, Duncan A.; Van Liefferinge, Brice; Blankenship, Donald D.; Frezzotti, Massimo; Roberts, Jason L.

2018-04-01

We reconstruct the pattern of surface accumulation in the region around Dome C, East Antarctica, since the last glacial. We use a set of 18 isochrones spanning all observable depths of the ice column, interpreted from various ice-penetrating radar surveys and a 1-D ice flow model to invert for accumulation rates in the region. The shallowest four isochrones are then used to calculate paleoaccumulation rates between isochrone pairs using a 1-D assumption where horizontal advection is negligible in the time interval of each layer. We observe that the large-scale (100s km) surface accumulation gradient is spatially stable through the last 73 kyr, which reflects current modeled and observed precipitation gradients in the region. We also observe small-scale (10 s km) accumulation variations linked to snow redistribution at the surface, due to changes in its slope and curvature in the prevailing wind direction that remain spatially stationary since the last glacial.

Iterative initial condition reconstruction

NASA Astrophysics Data System (ADS)

Schmittfull, Marcel; Baldauf, Tobias; Zaldarriaga, Matias

2017-07-01

Motivated by recent developments in perturbative calculations of the nonlinear evolution of large-scale structure, we present an iterative algorithm to reconstruct the initial conditions in a given volume starting from the dark matter distribution in real space. In our algorithm, objects are first moved back iteratively along estimated potential gradients, with a progressively reduced smoothing scale, until a nearly uniform catalog is obtained. The linear initial density is then estimated as the divergence of the cumulative displacement, with an optional second-order correction. This algorithm should undo nonlinear effects up to one-loop order, including the higher-order infrared resummation piece. We test the method using dark matter simulations in real space. At redshift z =0 , we find that after eight iterations the reconstructed density is more than 95% correlated with the initial density at k ≤0.35 h Mpc-1 . The reconstruction also reduces the power in the difference between reconstructed and initial fields by more than 2 orders of magnitude at k ≤0.2 h Mpc-1 , and it extends the range of scales where the full broadband shape of the power spectrum matches linear theory by a factor of 2-3. As a specific application, we consider measurements of the baryonic acoustic oscillation (BAO) scale that can be improved by reducing the degradation effects of large-scale flows. In our idealized dark matter simulations, the method improves the BAO signal-to-noise ratio by a factor of 2.7 at z =0 and by a factor of 2.5 at z =0.6 , improving standard BAO reconstruction by 70% at z =0 and 30% at z =0.6 , and matching the optimal BAO signal and signal-to-noise ratio of the linear density in the same volume. For BAO, the iterative nature of the reconstruction is the most important aspect.

Exploration, Sampling, And Reconstruction of Free Energy Surfaces with Gaussian Process Regression.

PubMed

Mones, Letif; Bernstein, Noam; Csányi, Gábor

2016-10-11

Practical free energy reconstruction algorithms involve three separate tasks: biasing, measuring some observable, and finally reconstructing the free energy surface from those measurements. In more than one dimension, adaptive schemes make it possible to explore only relatively low lying regions of the landscape by progressively building up the bias toward the negative of the free energy surface so that free energy barriers are eliminated. Most schemes use the final bias as their best estimate of the free energy surface. We show that large gains in computational efficiency, as measured by the reduction of time to solution, can be obtained by separating the bias used for dynamics from the final free energy reconstruction itself. We find that biasing with metadynamics, measuring a free energy gradient estimator, and reconstructing using Gaussian process regression can give an order of magnitude reduction in computational cost.

The effect of sulfate concentration on (sub)millimeter-scale sulfide δ 34S in hypersaline cyanobacterial mats over the diurnal cycle

NASA Astrophysics Data System (ADS)

Fike, David A.; Finke, Niko; Zha, Jessica; Blake, Garrett; Hoehler, Tori M.; Orphan, Victoria J.

2009-10-01

Substantial isotopic fractionations are associated with many microbial sulfur metabolisms and measurements of the bulk δ 34S isotopic composition of sulfur species (predominantly sulfates and/or sulfides) have been a key component in developing our understanding of both modern and ancient biogeochemical cycling. However, the interpretations of bulk δ 34S measurements are often non-unique, making reconstructions of paleoenvironmental conditions or microbial ecology challenging. In particular, the link between the μm-scale microbial activity that generates isotopic signatures and their eventual preservation as a bulk rock value in the geologic record has remained elusive, in large part because of the difficulty of extracting sufficient material at small scales. Here we investigate the potential for small-scale (˜100 μm-1 cm) δ 34S variability to provide additional constraints for environmental and/or ecological reconstructions. We have investigated the impact of sulfate concentrations (0.2, 1, and 80 mM SO 4) on the δ 34S composition of hydrogen sulfide produced over the diurnal (day/night) cycle in cyanobacterial mats from Guerrero Negro, Baja California Sur, Mexico. Sulfide was captured as silver sulfide on the surface of a 2.5 cm metallic silver disk partially submerged beneath the mat surface. Subsequent analyses were conducted on a Cameca 7f-GEO secondary ion mass spectrometer (SIMS) to record spatial δ 34S variability within the mats under different environmental conditions. Isotope measurements were made in a 2-dimensional grid for each incubation, documenting both lateral and vertical isotopic variation within the mats. Typical grids consisted of ˜400-800 individual measurements covering a lateral distance of ˜1 mm and a vertical depth of ˜5-15 mm. There is a large isotopic enrichment (˜10-20‰) in the uppermost mm of sulfide in those mats where [SO 4] was non-limiting (field and lab incubations at 80 mM). This is attributed to rapid recycling of sulfur (elevated sulfate reduction rates and extensive sulfide oxidation) at and above the chemocline. This isotopic gradient is observed in both day and night enrichments and suggests that, despite the close physical association between cyanobacteria and select sulfate-reducing bacteria, photosynthetic forcing has no substantive impact on δ 34S in these cyanobacterial mats. Perhaps equally surprising, large, spatially-coherent δ 34S oscillations (˜20-30‰ over 1 mm) occurred at depths up to ˜1.5 cm below the mat surface. These gradients must arise in situ from differential microbial metabolic activity and fractionation during sulfide production at depth. Sulfate concentrations were the dominant control on the spatial variability of sulfide δ 34S. Decreased sulfate concentrations diminished both vertical and lateral δ 34S variability, suggesting that small-scale variations of δ 34S can be diagnostic for reconstructing past sulfate concentrations, even when original sulfate δ 34S is unknown.

Large-Scale Point-Cloud Visualization through Localized Textured Surface Reconstruction.

PubMed

Arikan, Murat; Preiner, Reinhold; Scheiblauer, Claus; Jeschke, Stefan; Wimmer, Michael

2014-09-01

In this paper, we introduce a novel scene representation for the visualization of large-scale point clouds accompanied by a set of high-resolution photographs. Many real-world applications deal with very densely sampled point-cloud data, which are augmented with photographs that often reveal lighting variations and inaccuracies in registration. Consequently, the high-quality representation of the captured data, i.e., both point clouds and photographs together, is a challenging and time-consuming task. We propose a two-phase approach, in which the first (preprocessing) phase generates multiple overlapping surface patches and handles the problem of seamless texture generation locally for each patch. The second phase stitches these patches at render-time to produce a high-quality visualization of the data. As a result of the proposed localization of the global texturing problem, our algorithm is more than an order of magnitude faster than equivalent mesh-based texturing techniques. Furthermore, since our preprocessing phase requires only a minor fraction of the whole data set at once, we provide maximum flexibility when dealing with growing data sets.

FlyCap: Markerless Motion Capture Using Multiple Autonomous Flying Cameras.

PubMed

Xu, Lan; Liu, Yebin; Cheng, Wei; Guo, Kaiwen; Zhou, Guyue; Dai, Qionghai; Fang, Lu

2017-07-18

Aiming at automatic, convenient and non-instrusive motion capture, this paper presents a new generation markerless motion capture technique, the FlyCap system, to capture surface motions of moving characters using multiple autonomous flying cameras (autonomous unmanned aerial vehicles(UAVs) each integrated with an RGBD video camera). During data capture, three cooperative flying cameras automatically track and follow the moving target who performs large-scale motions in a wide space. We propose a novel non-rigid surface registration method to track and fuse the depth of the three flying cameras for surface motion tracking of the moving target, and simultaneously calculate the pose of each flying camera. We leverage the using of visual-odometry information provided by the UAV platform, and formulate the surface tracking problem in a non-linear objective function that can be linearized and effectively minimized through a Gaussian-Newton method. Quantitative and qualitative experimental results demonstrate the plausible surface and motion reconstruction results.

Surface Features Parameterization and Equivalent Roughness Height Estimation of a Real Subglacial Conduit in the Arctic

NASA Astrophysics Data System (ADS)

Chen, Y.; Liu, X.; Mankoff, K. D.; Gulley, J. D.

2016-12-01

The surfaces of subglacial conduits are very complex, coupling multi-scale roughness, large sinuosity, and cross-sectional variations together. Those features significantly affect the friction law and drainage efficiency inside the conduit by altering velocity and pressure distributions, thus posing considerable influences on the dynamic development of the conduit. Parameterizing the above surface features is a first step towards understanding their hydraulic influences. A Matlab package is developed to extract the roughness field, the conduit centerline, and associated area and curvature data from the conduit surface, acquired from 3D scanning. By using those data, the characteristic vertical and horizontal roughness scales are then estimated based on the structure functions. The centerline sinuosities, defined through three concepts, i.e., the traditional definition of a fluvial river, entropy-based sinuosity, and curvature-based sinuosity, are also calculated and compared. The cross-sectional area and equivalent circular diameter along the centerline are also calculated. Among those features, the roughness is especially important due to its pivotal role in determining the wall friction, and thus an estimation of the equivalent roughness height is of great importance. To achieve such a goal, the original conduit is firstly simplified into a straight smooth pipe with the same volume and centerline length, and the roughness field obtained above is then reconstructed into the simplified pipe. An OpenFOAM-based Large-eddy-simulation (LES) is then performed based on the reconstructed pipe. Considering that the Reynolds number is of the order 106, and the relative roughness is larger than 5% for 60% of the conduit, we test the validity of the resistance law for completely rough pipe. The friction factor is calculated based on the pressure drop and mean velocity in the simulation. Working together, the equivalent roughness height can be calculated. However, whether the assumption is applicable for the current case, i.e., high relative roughness, is a question. Two other roughness heights, i.e., the vertical roughness scale based on structure functions and viscous sublayer thickness determined from the wall boundary layer are also calculated and compared with the equivalent roughness height.

SIRT-FILTER v1.0.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

PELT, DANIEL

2017-04-21

Small Python package to compute tomographic reconstructions using a reconstruction method published in: Pelt, D.M., & De Andrade, V. (2017). Improved tomographic reconstruction of large-scale real-world data by filter optimization. Advanced Structural and Chemical Imaging 2: 17; and Pelt, D. M., & Batenburg, K. J. (2015). Accurately approximating algebraic tomographic reconstruction by filtered backprojection. In Proceedings of The 13th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine (pp. 158-161).

Solving Large-Scale Inverse Magnetostatic Problems using the Adjoint Method

PubMed Central

Bruckner, Florian; Abert, Claas; Wautischer, Gregor; Huber, Christian; Vogler, Christoph; Hinze, Michael; Suess, Dieter

2017-01-01

An efficient algorithm for the reconstruction of the magnetization state within magnetic components is presented. The occurring inverse magnetostatic problem is solved by means of an adjoint approach, based on the Fredkin-Koehler method for the solution of the forward problem. Due to the use of hybrid FEM-BEM coupling combined with matrix compression techniques the resulting algorithm is well suited for large-scale problems. Furthermore the reconstruction of the magnetization state within a permanent magnet as well as an optimal design application are demonstrated. PMID:28098851

Dynamic probe of ZnTe(110) surface by scanning tunneling microscopy

PubMed Central

Kanazawa, Ken; Yoshida, Shoji; Shigekawa, Hidemi; Kuroda, Shinji

2015-01-01

The reconstructed surface structure of the II–VI semiconductor ZnTe (110), which is a promising material in the research field of semiconductor spintronics, was studied by scanning tunneling microscopy/spectroscopy (STM/STS). First, the surface states formed by reconstruction by the charge transfer of dangling bond electrons from cationic Zn to anionic Te atoms, which are similar to those of IV and III–V semiconductors, were confirmed in real space. Secondly, oscillation in tunneling current between binary states, which is considered to reflect a conformational change in the topmost Zn–Te structure between the reconstructed and bulk-like ideal structures, was directly observed by STM. Third, using the technique of charge injection, a surface atomic structure was successfully fabricated, suggesting the possibility of atomic-scale manipulation of this widely applicable surface of ZnTe. PMID:27877752

Transport induced by large scale convective structures in a dipole-confined plasma.

PubMed

Grierson, B A; Mauel, M E; Worstell, M W; Klassen, M

2010-11-12

Convective structures characterized by E×B motion are observed in a dipole-confined plasma. Particle transport rates are calculated from density dynamics obtained from multipoint measurements and the reconstructed electrostatic potential. The calculated transport rates determined from the large-scale dynamics and local probe measurements agree in magnitude, show intermittency, and indicate that the particle transport is dominated by large-scale convective structures.

Response of wheat yield in Spain to large-scale patterns

NASA Astrophysics Data System (ADS)

Hernandez-Barrera, Sara; Rodriguez-Puebla, Concepcion

2016-04-01

Crops are vulnerable to extreme climate conditions as drought, heat stress and frost risk. In previous study we have quantified the influence of these climate conditions for winter wheat in Spain (Hernandez-Barrera et al. 2015). The climate extremes respond to large-scale atmospheric and oceanic patterns. Therefore, a question emerges in our investigation: How large-scale patterns affect wheat yield? Obtaining and understanding these relationships require different approaches. In this study, we first obtained the leading mode of observed wheat yield variability to characterize the common variability over different provinces in Spain. Then, the wheat variability is related to different modes of mean sea level pressure, jet stream and sea surface temperature by using Partial Least-Squares, which captures the relevant climate drivers accounting for variations in wheat yield from sowing to harvesting. We used the ERA-Interim reanalysis data and the Extended Reconstructed Sea Surface Temperature (SST) (ERSST v3b). The derived model provides insight about the teleconnections between wheat yield and atmospheric and oceanic circulations, which is considered to project the wheat yield trend under global warming using outputs of twelve climate models corresponding to the Coupled Models Intercomparison Project phase 5 (CMIP5). Hernandez-Barrera S., C. Rodríguez-Puebla and A.J. Challinor. Effects of diurnal temperature range and drought on wheat yield in Spain. Theoretical and Applied Climatology (submitted)

Techniques for Large-Scale Bacterial Genome Manipulation and Characterization of the Mutants with Respect to In Silico Metabolic Reconstructions.

PubMed

diCenzo, George C; Finan, Turlough M

2018-01-01

The rate at which all genes within a bacterial genome can be identified far exceeds the ability to characterize these genes. To assist in associating genes with cellular functions, a large-scale bacterial genome deletion approach can be employed to rapidly screen tens to thousands of genes for desired phenotypes. Here, we provide a detailed protocol for the generation of deletions of large segments of bacterial genomes that relies on the activity of a site-specific recombinase. In this procedure, two recombinase recognition target sequences are introduced into known positions of a bacterial genome through single cross-over plasmid integration. Subsequent expression of the site-specific recombinase mediates recombination between the two target sequences, resulting in the excision of the intervening region and its loss from the genome. We further illustrate how this deletion system can be readily adapted to function as a large-scale in vivo cloning procedure, in which the region excised from the genome is captured as a replicative plasmid. We next provide a procedure for the metabolic analysis of bacterial large-scale genome deletion mutants using the Biolog Phenotype MicroArray™ system. Finally, a pipeline is described, and a sample Matlab script is provided, for the integration of the obtained data with a draft metabolic reconstruction for the refinement of the reactions and gene-protein-reaction relationships in a metabolic reconstruction.

Source localization in electromyography using the inverse potential problem

NASA Astrophysics Data System (ADS)

van den Doel, Kees; Ascher, Uri M.; Pai, Dinesh K.

2011-02-01

We describe an efficient method for reconstructing the activity in human muscles from an array of voltage sensors on the skin surface. MRI is used to obtain morphometric data which are segmented into muscle tissue, fat, bone and skin, from which a finite element model for volume conduction is constructed. The inverse problem of finding the current sources in the muscles is solved using a careful regularization technique which adds a priori information, yielding physically reasonable solutions from among those that satisfy the basic potential problem. Several regularization functionals are considered and numerical experiments on a 2D test model are performed to determine which performs best. The resulting scheme leads to numerical difficulties when applied to large-scale 3D problems. We clarify the nature of these difficulties and provide a method to overcome them, which is shown to perform well in the large-scale problem setting.

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

PubMed Central

2010-01-01

Background Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabilities of organisms and interpreting experimental data. As the number of such reconstructions and analysis methods increases, there is a greater need for data uniformity and ease of distribution and use. Description We describe BiGG, a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. BiGG integrates several published genome-scale metabolic networks into one resource with standard nomenclature which allows components to be compared across different organisms. BiGG can be used to browse model content, visualize metabolic pathway maps, and export SBML files of the models for further analysis by external software packages. Users may follow links from BiGG to several external databases to obtain additional information on genes, proteins, reactions, metabolites and citations of interest. Conclusions BiGG addresses a need in the systems biology community to have access to high quality curated metabolic models and reconstructions. It is freely available for academic use at http://bigg.ucsd.edu. PMID:20426874

A Picea crassifolia Tree-Ring Width-Based Temperature Reconstruction for the Mt. Dongda Region, Northwest China, and Its Relationship to Large-Scale Climate Forcing

PubMed Central

Liu, Yu; Sun, Changfeng; Li, Qiang; Cai, Qiufang

2016-01-01

The historical May–October mean temperature since 1831 was reconstructed based on tree-ring width of Qinghai spruce (Picea crassifolia Kom.) collected on Mt. Dongda, North of the Hexi Corridor in Northwest China. The regression model explained 46.6% of the variance of the instrumentally observed temperature. The cold periods in the reconstruction were 1831–1889, 1894–1901, 1908–1934 and 1950–1952, and the warm periods were 1890–1893, 1902–1907, 1935–1949 and 1953–2011. During the instrumental period (1951–2011), an obvious warming trend appeared in the last twenty years. The reconstruction displayed similar patterns to a temperature reconstruction from the east-central Tibetan Plateau at the inter-decadal timescale, indicating that the temperature reconstruction in this study was a reliable proxy for Northwest China. It was also found that the reconstruction series had good consistency with the Northern Hemisphere temperature at a decadal timescale. Multi-taper method spectral analysis detected some low- and high-frequency cycles (2.3–2.4-year, 2.8-year, 3.4–3.6-year, 5.0-year, 9.9-year and 27.0-year). Combining these cycles, the relationship of the low-frequency change with the Pacific Decadal Oscillation (PDO), North Atlantic Oscillation (NAO) and Southern Oscillation (SO) suggested that the reconstructed temperature variations may be related to large-scale atmospheric-oceanic variations. Major volcanic eruptions were partly reflected in the reconstructed temperatures after high-pass filtering; these events promoted anomalous cooling in this region. The results of this study not only provide new information for assessing the long-term temperature changes in the Hexi Corridor of Northwest China, but also further demonstrate the effects of large-scale atmospheric-oceanic circulation on climate change in Northwest China. PMID:27509206

Testing large aspheric surfaces with complementary annular subaperture interferometric method

NASA Astrophysics Data System (ADS)

Hou, Xi; Wu, Fan; Lei, Baiping; Fan, Bin; Chen, Qiang

2008-07-01

Annular subaperture interferometric method has provided an alternative solution to testing rotationally symmetric aspheric surfaces with low cost and flexibility. However, some new challenges, particularly in the motion and algorithm components, appear when applied to large aspheric surfaces with large departure in the practical engineering. Based on our previously reported annular subaperture reconstruction algorithm with Zernike annular polynomials and matrix method, and the experimental results for an approximate 130-mm diameter and f/2 parabolic mirror, an experimental investigation by testing an approximate 302-mm diameter and f/1.7 parabolic mirror with the complementary annular subaperture interferometric method is presented. We have focused on full-aperture reconstruction accuracy, and discuss some error effects and limitations of testing larger aspheric surfaces with the annular subaperture method. Some considerations about testing sector segment with complementary sector subapertures are provided.

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE.

PubMed

Norsigian, Charles J; Kavvas, Erol; Seif, Yara; Palsson, Bernhard O; Monk, Jonathan M

2018-01-01

Acinetobacter baumannii has become an urgent clinical threat due to the recent emergence of multi-drug resistant strains. There is thus a significant need to discover new therapeutic targets in this organism. One means for doing so is through the use of high-quality genome-scale reconstructions. Well-curated and accurate genome-scale models (GEMs) of A. baumannii would be useful for improving treatment options. We present an updated and improved genome-scale reconstruction of A. baumannii AYE, named iCN718, that improves and standardizes previous A. baumannii AYE reconstructions. iCN718 has 80% accuracy for predicting gene essentiality data and additionally can predict large-scale phenotypic data with as much as 89% accuracy, a new capability for an A. baumannii reconstruction. We further demonstrate that iCN718 can be used to analyze conserved metabolic functions in the A. baumannii core genome and to build strain-specific GEMs of 74 other A. baumannii strains from genome sequence alone. iCN718 will serve as a resource to integrate and synthesize new experimental data being generated for this urgent threat pathogen.

Modeling and Control of State-Affine Probabilistic Systems for Atomic-Scale Dynamics

DTIC Science & Technology

2007-06-01

Analysis for Nonlinear Systems. New York: Spring -Verlag, 1987. [5] M. Itoh, "Atomic-scale homoepitaxial growth simulations of reconstructed III-V surfaces...Ridge, NJ; 1995. -- SSC function of the Node 182 [2] M. K. Weldon , K. T. Queeney, J. Eng Jr., K. Raghavachari, and Y. J. Chabal, "The surface science

Satellite measurements reveal strong anisotropy in spatial coherence of climate variations over the Tibet Plateau.

PubMed

Chen, Deliang; Tian, Yudong; Yao, Tandong; Ou, Tinghai

2016-08-24

This study uses high-resolution, long-term satellite observations to evaluate the spatial scales of the climate variations across the Tibet Plateau (TP). Both land surface temperature and precipitation observations of more than 10 years were analysed with a special attention to eight existing ice-core sites in the TP. The temporal correlation for the monthly or annual anomalies between any two points decreases exponentially with their spatial distance, and we used the e-folding decay constant to quantify the spatial scales. We found that the spatial scales are strongly direction-dependent, with distinctive patterns in the west-east and south-north orientations, for example. Meanwhile, in the same directions the scales are largely symmetric backward and forward. Focusing on the west-east and south-north directions, we found the spatial coherence in the first is generally stronger than in the second. The annual surface temperature had typical spatial scales of 302-480 km, while the annual precipitation showed smaller scales of 111-182 km. The majority of the eight ice-core sites exhibit scales much smaller than the typical scales over the TP as a whole. These results provide important observational basis for the selection of appropriate downscaling strategies, deployment of climate-data collection networks, and interpreting paleoclimate reconstructions.

Satellite measurements reveal strong anisotropy in spatial coherence of climate variations over the Tibet Plateau

NASA Astrophysics Data System (ADS)

Chen, Deliang; Tian, Yudong; Yao, Tandong; Ou, Tinghai

2016-08-01

This study uses high-resolution, long-term satellite observations to evaluate the spatial scales of the climate variations across the Tibet Plateau (TP). Both land surface temperature and precipitation observations of more than 10 years were analysed with a special attention to eight existing ice-core sites in the TP. The temporal correlation for the monthly or annual anomalies between any two points decreases exponentially with their spatial distance, and we used the e-folding decay constant to quantify the spatial scales. We found that the spatial scales are strongly direction-dependent, with distinctive patterns in the west-east and south-north orientations, for example. Meanwhile, in the same directions the scales are largely symmetric backward and forward. Focusing on the west-east and south-north directions, we found the spatial coherence in the first is generally stronger than in the second. The annual surface temperature had typical spatial scales of 302-480 km, while the annual precipitation showed smaller scales of 111-182 km. The majority of the eight ice-core sites exhibit scales much smaller than the typical scales over the TP as a whole. These results provide important observational basis for the selection of appropriate downscaling strategies, deployment of climate-data collection networks, and interpreting paleoclimate reconstructions.

Satellite measurements reveal strong anisotropy in spatial coherence of climate variations over the Tibet Plateau

PubMed Central

Chen, Deliang; Tian, Yudong; Yao, Tandong; Ou, Tinghai

2016-01-01

This study uses high-resolution, long-term satellite observations to evaluate the spatial scales of the climate variations across the Tibet Plateau (TP). Both land surface temperature and precipitation observations of more than 10 years were analysed with a special attention to eight existing ice-core sites in the TP. The temporal correlation for the monthly or annual anomalies between any two points decreases exponentially with their spatial distance, and we used the e-folding decay constant to quantify the spatial scales. We found that the spatial scales are strongly direction-dependent, with distinctive patterns in the west-east and south-north orientations, for example. Meanwhile, in the same directions the scales are largely symmetric backward and forward. Focusing on the west-east and south-north directions, we found the spatial coherence in the first is generally stronger than in the second. The annual surface temperature had typical spatial scales of 302–480 km, while the annual precipitation showed smaller scales of 111–182 km. The majority of the eight ice-core sites exhibit scales much smaller than the typical scales over the TP as a whole. These results provide important observational basis for the selection of appropriate downscaling strategies, deployment of climate-data collection networks, and interpreting paleoclimate reconstructions. PMID:27553388

Investigating large-scale secondary circulations within impact crater topographies in a refractive index-matched facility

NASA Astrophysics Data System (ADS)

Blois, Gianluca; Kim, Taehoon; Bristow, Nathan; Day, Mackenzie; Kocurek, Gary; Anderson, William; Christensen, Kenneth

2017-11-01

Impact craters, common large-scale topographic features on the surface of Mars, are circular depressions delimited by a sharp ridge. A variety of crater fill morphologies exist, suggesting that complex intracrater circulations affect their evolution. Some large craters (diameter >10 km), particularly at mid latitudes on Mars, exhibit a central mound surrounded by circular moat. Foremost among these examples is Gale crater, landing site of NASA's Curiosity rover, since large-scale climatic processes early in in the history of Mars are preserved in the stratigraphic record of the inner mound. Investigating the intracrater flow produced by large scale winds aloft Mars craters is key to a number of important scientific issues including ongoing research on Mars paleo-environmental reconstruction and the planning of future missions (these results must be viewed in conjunction with the affects of radial katabatibc flows, the importance of which is already established in preceding studies). In this work we consider a number of crater shapes inspired by Gale morphology, including idealized craters. Access to the flow field within such geometrically complex topography is achieved herein using a refractive index matched approach. Instantaneous velocity maps, using both planar and volumetric PIV techniques, are presented to elucidate complex three-dimensional flow within the crater. In addition, first- and second-order statistics will be discussed in the context of wind-driven (aeolian) excavation of crater fill.

Femtosecond movies of water near interfaces at sub-Angstrom resolution

NASA Astrophysics Data System (ADS)

Coridan, Robert; Hwee Lai, Ghee; Schmidt, Nathan; Abbamonte, Peter; Wong, Gerard C. L.

2010-03-01

The behavior of liquid water near interfaces with nanoscopic variations in chemistry influences a broad range of phenomena in biology. Using inelastic x-ray scattering (IXS) data from 3rd-generation synchrotron x-ray sources, we reconstruct the Greens function of liquid water, which describes the å-scale spatial and femtosecond-scale temporal evolution of density fluctuations. We extend this response function formalism to reconstruct the evolution of hydration structures near dynamic surfaces with different charge distributions, in order to define more precisely the molecular signature of hydrophilicity and hydrophobicity. Moreover, we investigate modifications to surface hydration structures and dynamics as the size of hydrophilic and hydrophobic patches are varied.

Supersonic Flight Dynamics Test: Trajectory, Atmosphere, and Aerodynamics Reconstruction

NASA Technical Reports Server (NTRS)

Kutty, Prasad; Karlgaard, Christopher D.; Blood, Eric M.; O'Farrell, Clara; Ginn, Jason M.; Shoenenberger, Mark; Dutta, Soumyo

2015-01-01

The Supersonic Flight Dynamics Test is a full-scale flight test of a Supersonic Inflatable Aerodynamic Decelerator, which is part of the Low Density Supersonic Decelerator technology development project. The purpose of the project is to develop and mature aerodynamic decelerator technologies for landing large mass payloads on the surface of Mars. The technologies include a Supersonic Inflatable Aerodynamic Decelerator and Supersonic Parachutes. The first Supersonic Flight Dynamics Test occurred on June 28th, 2014 at the Pacific Missile Range Facility. This test was used to validate the test architecture for future missions. The flight was a success and, in addition, was able to acquire data on the aerodynamic performance of the supersonic inflatable decelerator. This paper describes the instrumentation, analysis techniques, and acquired flight test data utilized to reconstruct the vehicle trajectory, atmosphere, and aerodynamics. The results of the reconstruction show significantly higher lofting of the trajectory, which can partially be explained by off-nominal booster motor performance. The reconstructed vehicle force and moment coefficients fall well within pre-flight predictions. A parameter identification analysis indicates that the vehicle displayed greater aerodynamic static stability than seen in pre-flight computational predictions and ballistic range tests.

Influence of high-latitude warming and land-use changes in the early 20th century northern Eurasian CO2 sink

NASA Astrophysics Data System (ADS)

Bastos, Ana; Peregon, Anna; Gani, Érico A.; Khudyaev, Sergey; Yue, Chao; Li, Wei; Gouveia, Célia M.; Ciais, Philippe

2018-06-01

While the global carbon budget (GCB) is relatively well constrained over the last decades of the 20th century [1], observations and reconstructions of atmospheric CO2 growth rate present large discrepancies during the earlier periods [2]. The large uncertainty in GCB has been attributed to the land biosphere, although it is not clear whether the gaps between observations and reconstructions are mainly because land-surface models (LSMs) underestimate inter-annual to decadal variability in natural ecosystems, or due to inaccuracies in land-use change reconstructions. As Eurasia encompasses about 15% of the terrestrial surface, 20% of the global soil organic carbon pool and constitutes a large CO2 sink, we evaluate the potential contribution of natural and human-driven processes to induce large anomalies in the biospheric CO2 fluxes in the early 20th century. We use an LSM specifically developed for high-latitudes, that correctly simulates Eurasian C-stocks and fluxes from observational records [3], in order to evaluate the sensitivity of the Eurasian sink to the strong high-latitude warming occurring between 1930 and 1950. We show that the LSM with improved high-latitude phenology, hydrology and soil processes, contrary to the group of LSMs in [2], is able to represent enhanced vegetation growth linked to boreal spring warming, consistent with tree-ring time-series [4]. By compiling a dataset of annual agricultural area in the Former Soviet Union that better reflects changes in cropland area linked with socio-economic fluctuations during the early 20th century, we show that land-abadonment during periods of crisis and war may result in reduced CO2 emissions from land-use change (44%–78% lower) detectable at decadal time-scales. Our study points to key processes that may need to be improved in LSMs and LUC datasets in order to better represent decadal variability in the land CO2 sink, and to better constrain the GCB during the pre-observational record.

Synthesis of underreported small-scale fisheries catch in Pacific island waters

NASA Astrophysics Data System (ADS)

Zeller, D.; Harper, S.; Zylich, K.; Pauly, D.

2015-03-01

We synthesize fisheries catch reconstruction studies for 25 Pacific island countries, states and territories, which compare estimates of total domestic catches with officially reported catch data. We exclude data for the large-scale tuna fleets, which have largely foreign beneficial ownership, even when flying Pacific flags. However, we recognize the considerable financial contributions derived from foreign access or charter fees for Pacific host countries. The reconstructions for the 25 entities from 1950 to 2010 suggested that total domestic catches were 2.5 times the data reported to FAO. This discrepancy was largest in early periods (1950: 6.4 times), while for 2010, total catches were 1.7 times the reported data. There was a significant difference in trend between reported and reconstructed catches since 2000, with reconstructed catches declining strongly since their peak in 2000. Total catches increased from 110,000 t yr-1 in 1950 (of which 17,400 t were reported) to a peak of over 250,000 t yr-1 in 2000, before declining to around 200,000 t yr-1 by 2010. This decrease is driven by a declining artisanal (small-scale commercial) catch, which was not compensated for by increasing domestic industrial (large-scale commercial) catches. The artisanal fisheries appear to be declining from a peak of 97,000 t yr-1 in 1992 to less than 50,000 t yr-1 by 2010. However, total catches were dominated by subsistence (small-scale, non-commercial) fisheries, which accounted for 69 % of total catches, with the majority missing from the reported data. Artisanal catches accounted for 22 %, while truly domestic industrial fisheries accounted for only 6 % of total catches. The smallest component is the recreational (small-scale, non-commercial and largely for leisure) sector (2 %), which, although small in catch, is likely of economic importance in some areas due to its direct link to tourism income.

Characterizing Spatial Organization of Cell Surface Receptors in Human Breast Cancer with STORM

NASA Astrophysics Data System (ADS)

Lyall, Evan; Chapman, Matthew R.; Sohn, Lydia L.

2012-02-01

Regulation and control of complex biological functions are dependent upon spatial organization of biological structures at many different length scales. For instance Eph receptors and their ephrin ligands bind when opposing cells come into contact during development, resulting in spatial organizational changes on the nanometer scale that lead to changes on the macro scale, in a process known as organ morphogenesis. One technique able to probe this important spatial organization at both the nanometer and micrometer length scales, including at cell-cell junctions, is stochastic optical reconstruction microscopy (STORM). STORM is a technique that localizes individual fluorophores based on the centroids of their point spread functions and then reconstructs a composite image to produce super resolved structure. We have applied STORM to study spatial organization of the cell surface of human breast cancer cells, specifically the organization of tyrosine kinase receptors and chemokine receptors. A better characterization of spatial organization of breast cancer cell surface proteins is necessary to fully understand the tumorigenisis pathways in the most common malignancy in United States women.

Mechanism and energetics of O and O{sub 2} adsorption on polar and non-polar ZnO surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gorai, Prashun; Seebauer, Edmund G.; Ertekin, Elif, E-mail: ertekin@illinois.edu

2016-05-14

Polar surfaces of semiconducting metal oxides can exhibit structures and chemical reactivities that are distinct from their non-polar surfaces. Using first-principles calculations, we examine O adatom and O{sub 2} molecule adsorption on 8 different known ZnO reconstructions including Zn-terminated (Zn–ZnO) and O-terminated (O–ZnO) polar surfaces, and non-polar surfaces. We find that adsorption tendencies are largely governed by the thermodynamic environment, but exhibit variations due to the different surface chemistries of various reconstructions. The Zn–ZnO surface reconstructions which appear under O-rich and H-poor environments are found to be most amenable to O and O{sub 2} adsorption. We attribute this to themore » fact that on Zn–ZnO, the O-rich environments that promote O adsorption also simultaneously favor reconstructions that involve adsorbed O species. On these Zn–ZnO surfaces, O{sub 2} dissociatively adsorbs to form O adatoms. By contrast, on O–ZnO surfaces, the O-rich conditions required for O or O{sub 2} adsorption tend to promote reconstructions involving adsorbed H species, making further O species adsorption more difficult. These insights about O{sub 2} adsorption on ZnO surfaces suggest possible design rules to understand the adsorption properties of semiconductor polar surfaces.« less

Eocene to mid-Pliocene landscape evolution in Scandinavia inferred from offshore sediment volumes and pre-glacial topography using inverse modelling

NASA Astrophysics Data System (ADS)

Pedersen, Vivi K.; Braun, Jean; Huismans, Ritske S.

2018-02-01

The origin of high topography in Scandinavia is highly debated, both in terms of its age and the underlying mechanism for its formation. Traditionally, the current high topography is assumed to have formed by several Cenozoic (mainly Neogene) phases of surface uplift and dissection of an old peneplain surface. These same surface uplift events are suggested to explain the increased deposition observed in adjacent offshore basins on the Norwegian shelf and in the North Sea. However, more recently it has been suggested that erosion and isostatic rock uplift of existing topography may also explain the recent evolution of topography in Scandinavia. For this latter view, the increased sedimentation towards the present is assumed to be a consequence of a climate related increase in erosion. In this study we explore whether inverse modelling of landscape evolution can give new insight into Eocene to mid-Pliocene (54-4 Ma) landscape evolution in the Scandinavian region. We do this by combining a highly efficient forward-in-time landscape evolution model (FastScape) with an optimization scheme suitable for non-linear inverse problems (the neighbourhood algorithm - NA). To limit our approach to the fluvial regime, we exclude the most recent mid-Pliocene-Quaternary time period where glacial erosion processes are expected to dominate landscape evolution. The "goodness" of our landscape evolution models is evaluated using i) sediment fluxes based on decompacted offshore sediment volumes and ii) maximum pre-glacial topography from a mid-Pliocene landscape, reconstructed using geophysical relief and offshore sediment volumes from the mid-Pliocene-Quaternary. We find several tested scenarios consistent with the offshore sediment record and the maximum elevation for our reconstructed pre-glacial (mid-Pliocene) landscape reconstruction, including: I) substantial initial topography ( 2 km) at 54 Ma and no induced tectonic rock uplift, II) the combination of some initial topography ( 1.1 km) at 54 Ma and minor continued rock uplift (< 0.04 mm/yr) until 4 Ma, and III) a two-phased tectonic rock uplift of an initially low topography ( 0.1 km). However, out of these, only scenario I (no tectonic rock uplift) matches large-scale characteristics of our reconstructed pre-glacial (mid-Pliocene) topography well. Our preferred model for Eocene to mid-Pliocene landscape evolution in Scandinavia is therefore one where high topography ( 2 km) has existed throughout the time interval from 54 to 4 Ma. We do not find several phases of peneplain surface uplift necessary to explain offshore sediment volumes and large-scale topographic patterns. On the contrary, extensive peneplain dissection seems inconsistent with the low rates of erosion we infer based on the offshore sediment volumes.

Giant (12 ×12 ) and (4 ×8 ) reconstructions of the 6 H -SiC(0001) surface obtained by progressive enrichment in Si atoms

NASA Astrophysics Data System (ADS)

Martrou, David; Leoni, Thomas; Chaumeton, Florian; Castanié, Fabien; Gauthier, Sébastien; Bouju, Xavier

2018-02-01

Silicon carbide (SiC) is nowadays a major material for applications in high power electronics, quantum optics, or nitride semiconductors growth. Mastering the surface of SiC substrate is crucial to obtain reproducible results. Previous studies on the 6 H -SiC(0001) surface have determined several reconstructions, including the (√{3 }×√{3 }) -R 30∘ and the (3 ×3 ) . Here, we introduce a process of progressive Si enrichment that leads to the formation of two reconstructions, the giant (12 ×12 ) and the (4 ×8 ) . From electron diffraction and tunneling microscopy completed by molecular dynamics simulations, we build models introducing a type of Si adatom bridging two Si surface atoms. Using these Si bridges, we also propose a structure for two other reconstructions, the (2 √{3 }×2 √{3 }) -R 30∘ and the (2 √{3 }×2 √{13 } ). We show that five reconstructions follow each other with Si coverage ranging from 1 and 1.444 monolayer. This result opens the way to greatly improve the control of 6 H -SiC(0001) at the atomic scale.

Last millennium Northern Hemisphere summer temperatures from tree rings: Part II, spatially resolved reconstructions

NASA Astrophysics Data System (ADS)

Anchukaitis, Kevin J.; Wilson, Rob; Briffa, Keith R.; Büntgen, Ulf; Cook, Edward R.; D'Arrigo, Rosanne; Davi, Nicole; Esper, Jan; Frank, David; Gunnarson, Björn E.; Hegerl, Gabi; Helama, Samuli; Klesse, Stefan; Krusic, Paul J.; Linderholm, Hans W.; Myglan, Vladimir; Osborn, Timothy J.; Zhang, Peng; Rydval, Milos; Schneider, Lea; Schurer, Andrew; Wiles, Greg; Zorita, Eduardo

2017-05-01

Climate field reconstructions from networks of tree-ring proxy data can be used to characterize regional-scale climate changes, reveal spatial anomaly patterns associated with atmospheric circulation changes, radiative forcing, and large-scale modes of ocean-atmosphere variability, and provide spatiotemporal targets for climate model comparison and evaluation. Here we use a multiproxy network of tree-ring chronologies to reconstruct spatially resolved warm season (May-August) mean temperatures across the extratropical Northern Hemisphere (40-90°N) using Point-by-Point Regression (PPR). The resulting annual maps of temperature anomalies (750-1988 CE) reveal a consistent imprint of volcanism, with 96% of reconstructed grid points experiencing colder conditions following eruptions. Solar influences are detected at the bicentennial (de Vries) frequency, although at other time scales the influence of insolation variability is weak. Approximately 90% of reconstructed grid points show warmer temperatures during the Medieval Climate Anomaly when compared to the Little Ice Age, although the magnitude varies spatially across the hemisphere. Estimates of field reconstruction skill through time and over space can guide future temporal extension and spatial expansion of the proxy network.

Iraq: Recent Developments in Reconstruction Assistance

DTIC Science & Technology

2005-01-27

Developments in Reconstruction Assistance Summary Large-scale reconstruction assistance programs are being undertaken by the United States following the war...in grant aid and as much as $13.3 billion in possible loans. On June 28, 2004, the entity implementing assistance programs , the Coalition Provisional... programs are being undertaken by the United States in Iraq. This report describes recent developments in this assistance effort. The report will be updated

Iraq: Recent Developments in Reconstruction Assistance

DTIC Science & Technology

2004-12-20

Developments in Reconstruction Assistance Summary Large-scale reconstruction assistance programs are being undertaken by the United States following the war...in grant aid and as much as $13.3 billion in possible loans. On June 28, 2004, the entity implementing assistance programs , the Coalition... programs are being undertaken by the United States in Iraq. This report describes recent developments in this assistance effort. The report will be

Scale-dependent coupling of hysteretic capillary pressure, trapping, and fluid mobilities

NASA Astrophysics Data System (ADS)

Doster, F.; Celia, M. A.; Nordbotten, J. M.

2012-12-01

Many applications of multiphase flow in porous media, including CO2-storage and enhanced oil recovery, require mathematical models that span a large range of length scales. In the context of numerical simulations, practical grid sizes are often on the order of tens of meters, thereby de facto defining a coarse model scale. Under particular conditions, it is possible to approximate the sub-grid-scale distribution of the fluid saturation within a grid cell; that reconstructed saturation can then be used to compute effective properties at the coarse scale. If both the density difference between the fluids and the vertical extend of the grid cell are large, and buoyant segregation within the cell on a sufficiently shorte time scale, then the phase pressure distributions are essentially hydrostatic and the saturation profile can be reconstructed from the inferred capillary pressures. However, the saturation reconstruction may not be unique because the parameters and parameter functions of classical formulations of two-phase flow in porous media - the relative permeability functions, the capillary pressure -saturation relationship, and the residual saturations - show path dependence, i.e. their values depend not only on the state variables but also on their drainage and imbibition histories. In this study we focus on capillary pressure hysteresis and trapping and show that the contribution of hysteresis to effective quantities is dependent on the vertical length scale. By studying the transition from the two extreme cases - the homogeneous saturation distribution for small vertical extents and the completely segregated distribution for large extents - we identify how hysteretic capillary pressure at the local scale induces hysteresis in all coarse-scale quantities for medium vertical extents and finally vanishes for large vertical extents. Our results allow for more accurate vertically integrated modeling while improving our understanding of the coupling of capillary pressure and relative permeabilities over larger length scales.

No Association between Cortical Gyrification or Intrinsic Curvature and Attention-deficit/Hyperactivity Disorder in Adolescents and Young Adults.

PubMed

Forde, Natalie J; Ronan, Lisa; Zwiers, Marcel P; Alexander-Bloch, Aaron F; Faraone, Stephen V; Oosterlaan, Jaap; Heslenfeld, Dirk J; Hartman, Catharina A; Buitelaar, Jan K; Hoekstra, Pieter J

2017-01-01

Magnetic resonance imaging (MRI) studies have highlighted subcortical, cortical, and structural connectivity abnormalities associated with attention-deficit/hyperactivity disorder (ADHD). Gyrification investigations of the cortex have been inconsistent and largely negative, potentially due to a lack of sensitivity of the previously used morphological parameters. The innovative approach of applying intrinsic curvature analysis, which is predictive of gyrification pattern, to the cortical surface applied herein allowed us greater sensitivity to determine whether the structural connectivity abnormalities thus far identified at a centimeter scale also occur at a millimeter scale within the cortical surface. This could help identify neurodevelopmental processes that contribute to ADHD. Structural MRI datasets from the NeuroIMAGE project were used [ n = 306 ADHD, n = 164 controls, and n = 148 healthy siblings of individuals with ADHD (age in years, mean(sd); 17.2 (3.4), 16.8 (3.2), and 17.7 (3.8), respectively)]. Reconstructions of the cortical surfaces were computed with FreeSurfer. Intrinsic curvature (taken as a marker of millimeter-scale surface connectivity) and local gyrification index were calculated for each point on the surface (vertex) with Caret and FreeSurfer, respectively. Intrinsic curvature skew and mean local gyrification index were extracted per region; frontal, parietal, temporal, occipital, cingulate, and insula. A generalized additive model was used to compare the trajectory of these measures between groups over age, with sex, scanner site, total surface area of hemisphere, and familiality accounted for. After correcting for sex, scanner site, and total surface area no group differences were found in the developmental trajectory of intrinsic curvature or local gyrification index. Despite the increased sensitivity of intrinsic curvature, compared to gyrification measures, to subtle morphological abnormalities of the cortical surface we found no milimeter-scale connectivity abnormalities associated with ADHD.

Drought change in the middle reach of the Yellow River since the late Ming Dynasty and their correlation with runoff

NASA Astrophysics Data System (ADS)

Chen, F.

2017-12-01

Because of the reported decreasing trends in precipitation and streamflow in north-central China (Starting point of Ancient Silk Road), it is essential to understand long-term in water resource availability in this area. Thus, this research presents a new February-August PDSI reconstruction spanning CE 1615-2013 for the southern edge of the Gobi Desert under a highly variable arid and semi-arid climate in northern China. In addition to this new PDSI reconstruction, some previously published annual precipitation/PDSI reconstructions from the neighbouring regions were also used to infer the large-scale hydro-climatic signal of the middle reach of the Yellow River. Spatial correlation analyses with gridded precipitation data showed that the tree-ring records were indeed able to capture much of the regional interannual hydro-climatic signal variability. Using principal component analyses on the reconstructions and documentary records, many large-scale dry and flood events were found during the period AD 1615-2006. Many of these dry events have had profound impacts on the people of the study area over the past several centuries. Temporal correlations among the reconstruction and climatic indices, such as the El Niño-Southern Oscillation, demonstrate that water availability is influenced by tropical and high-latitude forcings in the Pacific rim. Continued work in this direction should enable us to understand better the hydrological change under global warming and the past climate variability of the silk road over long temporal and large spatial scales.

Large-angle correlations in the cosmic microwave background

NASA Astrophysics Data System (ADS)

Efstathiou, George; Ma, Yin-Zhe; Hanson, Duncan

2010-10-01

It has been argued recently by Copi et al. 2009 that the lack of large angular correlations of the CMB temperature field provides strong evidence against the standard, statistically isotropic, inflationary Lambda cold dark matter (ΛCDM) cosmology. We compare various estimators of the temperature correlation function showing how they depend on assumptions of statistical isotropy and how they perform on the Wilkinson Microwave Anisotropy Probe (WMAP) 5-yr Internal Linear Combination (ILC) maps with and without a sky cut. We show that the low multipole harmonics that determine the large-scale features of the temperature correlation function can be reconstructed accurately from the data that lie outside the sky cuts. The reconstructions are only weakly dependent on the assumed statistical properties of the temperature field. The temperature correlation functions computed from these reconstructions are in good agreement with those computed from the ILC map over the whole sky. We conclude that the large-scale angular correlation function for our realization of the sky is well determined. A Bayesian analysis of the large-scale correlations is presented, which shows that the data cannot exclude the standard ΛCDM model. We discuss the differences between our results and those of Copi et al. Either there exists a violation of statistical isotropy as claimed by Copi et al., or these authors have overestimated the significance of the discrepancy because of a posteriori choices of estimator, statistic and sky cut.

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Wenyang; Cheung, Yam; Sawant, Amit

2016-05-15

Purpose: To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. Methods: The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparsemore » regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. Results: On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. Conclusions: The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications.« less

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system.

PubMed

Liu, Wenyang; Cheung, Yam; Sawant, Amit; Ruan, Dan

2016-05-01

To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications.

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system

PubMed Central

Liu, Wenyang; Cheung, Yam; Sawant, Amit; Ruan, Dan

2016-01-01

Purpose: To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. Methods: The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. Results: On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. Conclusions: The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications. PMID:27147347

Soil carbon change in reconstructed tallgrass prairies

USDA-ARS?s Scientific Manuscript database

Reconstructing former cropland to tallgrass prairie can increase soil carbon (C) and enhance C sequestration to mitigate increases in atmospheric CO2. This large-scale study was conducted at Neal Smith National Wildlife Refuge (NSNWR) in Jasper County, south-central IA. Tracts of cropped land at NSN...

Hydrometeorological variability on a large french catchment and its relation to large-scale circulation across temporal scales

NASA Astrophysics Data System (ADS)

Massei, Nicolas; Dieppois, Bastien; Fritier, Nicolas; Laignel, Benoit; Debret, Maxime; Lavers, David; Hannah, David

2015-04-01

In the present context of global changes, considerable efforts have been deployed by the hydrological scientific community to improve our understanding of the impacts of climate fluctuations on water resources. Both observational and modeling studies have been extensively employed to characterize hydrological changes and trends, assess the impact of climate variability or provide future scenarios of water resources. In the aim of a better understanding of hydrological changes, it is of crucial importance to determine how and to what extent trends and long-term oscillations detectable in hydrological variables are linked to global climate oscillations. In this work, we develop an approach associating large-scale/local-scale correlation, enmpirical statistical downscaling and wavelet multiresolution decomposition of monthly precipitation and streamflow over the Seine river watershed, and the North Atlantic sea level pressure (SLP) in order to gain additional insights on the atmospheric patterns associated with the regional hydrology. We hypothesized that: i) atmospheric patterns may change according to the different temporal wavelengths defining the variability of the signals; and ii) definition of those hydrological/circulation relationships for each temporal wavelength may improve the determination of large-scale predictors of local variations. The results showed that the large-scale/local-scale links were not necessarily constant according to time-scale (i.e. for the different frequencies characterizing the signals), resulting in changing spatial patterns across scales. This was then taken into account by developing an empirical statistical downscaling (ESD) modeling approach which integrated discrete wavelet multiresolution analysis for reconstructing local hydrometeorological processes (predictand : precipitation and streamflow on the Seine river catchment) based on a large-scale predictor (SLP over the Euro-Atlantic sector) on a monthly time-step. This approach basically consisted in 1- decomposing both signals (SLP field and precipitation or streamflow) using discrete wavelet multiresolution analysis and synthesis, 2- generating one statistical downscaling model per time-scale, 3- summing up all scale-dependent models in order to obtain a final reconstruction of the predictand. The results obtained revealed a significant improvement of the reconstructions for both precipitation and streamflow when using the multiresolution ESD model instead of basic ESD ; in addition, the scale-dependent spatial patterns associated to the model matched quite well those obtained from scale-dependent composite analysis. In particular, the multiresolution ESD model handled very well the significant changes in variance through time observed in either prepciptation or streamflow. For instance, the post-1980 period, which had been characterized by particularly high amplitudes in interannual-to-interdecadal variability associated with flood and extremely low-flow/drought periods (e.g., winter 2001, summer 2003), could not be reconstructed without integrating wavelet multiresolution analysis into the model. Further investigations would be required to address the issue of the stationarity of the large-scale/local-scale relationships and to test the capability of the multiresolution ESD model for interannual-to-interdecadal forecasting. In terms of methodological approach, further investigations may concern a fully comprehensive sensitivity analysis of the modeling to the parameter of the multiresolution approach (different families of scaling and wavelet functions used, number of coefficients/degree of smoothness, etc.).

Equilibrium Reconstruction on the Large Helical Device

DOE Office of Scientific and Technical Information (OSTI.GOV)

Samuel A. Lazerson, D. Gates, D. Monticello, H. Neilson, N. Pomphrey, A. Reiman S. Sakakibara, and Y. Suzuki

Equilibrium reconstruction is commonly applied to axisymmetric toroidal devices. Recent advances in computational power and equilibrium codes have allowed for reconstructions of three-dimensional fields in stellarators and heliotrons. We present the first reconstructions of finite beta discharges in the Large Helical Device (LHD). The plasma boundary and magnetic axis are constrained by the pressure profile from Thomson scattering. This results in a calculation of plasma beta without a-priori assumptions of the equipartition of energy between species. Saddle loop arrays place additional constraints on the equilibrium. These reconstruction utilize STELLOPT, which calls VMEC. The VMEC equilibrium code assumes good nested fluxmore » surfaces. Reconstructed magnetic fields are fed into the PIES code which relaxes this constraint allowing for the examination of the effect of islands and stochastic regions on the magnetic measurements.« less

Local Adaptive Calibration of the GLASS Surface Incident Shortwave Radiation Product Using Smoothing Spline

NASA Astrophysics Data System (ADS)

Zhang, X.; Liang, S.; Wang, G.

2015-12-01

Incident solar radiation (ISR) over the Earth's surface plays an important role in determining the Earth's climate and environment. Generally, can be obtained from direct measurements, remotely sensed data, or reanalysis and general circulation models (GCMs) data. Each type of product has advantages and limitations: the surface direct measurements provide accurate but sparse spatial coverage, whereas other global products may have large uncertainties. Ground measurements have been normally used for validation and occasionally calibration, but transforming their "true values" spatially to improve the satellite products is still a new and challenging topic. In this study, an improved thin-plate smoothing spline approach is presented to locally "calibrate" the Global LAnd Surface Satellite (GLASS) ISR product using the reconstructed ISR data from surface meteorological measurements. The influences of surface elevation on ISR estimation was also considered in the proposed method. The point-based surface reconstructed ISR was used as the response variable, and the GLASS ISR product and the surface elevation data at the corresponding locations as explanatory variables to train the thin plate spline model. We evaluated the performance of the approach using the cross-validation method at both daily and monthly time scales over China. We also evaluated estimated ISR based on the thin-plate spline method using independent ground measurements at 10 sites from the Coordinated Enhanced Observation Network (CEON). These validation results indicated that the thin plate smoothing spline method can be effectively used for calibrating satellite derived ISR products using ground measurements to achieve better accuracy.

Atomically precise lateral modulation of a two-dimensional electron liquid in anatase TiO 2 thin films

DOE PAGES

Wang, Zhiming; Zhong, Z.; Walker, S. McKeown; ...

2017-03-10

Engineering the electronic band structure of two-dimensional electron liquids (2DELs) confined at the surface or interface of transition metal oxides is key to unlocking their full potential. Here we describe a new approach to tailoring the electronic structure of an oxide surface 2DEL demonstrating the lateral modulation of electronic states with atomic scale precision on an unprecedented length scale comparable to the Fermi wavelength. To this end, we use pulsed laser deposition to grow anatase TiO 2 films terminated by a (1 x 4) in-plane surface reconstruction. Employing photo-stimulated chemical surface doping we induce 2DELs with tunable carrier densities thatmore » are confined within a few TiO 2 layers below the surface. Subsequent in situ angle resolved photoemission experiments demonstrate that the (1 x 4) surface reconstruction provides a periodic lateral perturbation of the electron liquid. Furthermore, this causes strong backfolding of the electronic bands, opening of unidirectional gaps and a saddle point singularity in the density of states near the chemical potential.« less

A Bayesian partition modelling approach to resolve spatial variability in climate records from borehole temperature inversion

NASA Astrophysics Data System (ADS)

Hopcroft, Peter O.; Gallagher, Kerry; Pain, Christopher C.

2009-08-01

Collections of suitably chosen borehole profiles can be used to infer large-scale trends in ground-surface temperature (GST) histories for the past few hundred years. These reconstructions are based on a large database of carefully selected borehole temperature measurements from around the globe. Since non-climatic thermal influences are difficult to identify, representative temperature histories are derived by averaging individual reconstructions to minimize the influence of these perturbing factors. This may lead to three potentially important drawbacks: the net signal of non-climatic factors may not be zero, meaning that the average does not reflect the best estimate of past climate; the averaging over large areas restricts the useful amount of more local climate change information available; and the inversion methods used to reconstruct the past temperatures at each site must be mathematically identical and are therefore not necessarily best suited to all data sets. In this work, we avoid these issues by using a Bayesian partition model (BPM), which is computed using a trans-dimensional form of a Markov chain Monte Carlo algorithm. This then allows the number and spatial distribution of different GST histories to be inferred from a given set of borehole data by partitioning the geographical area into discrete partitions. Profiles that are heavily influenced by non-climatic factors will be partitioned separately. Conversely, profiles with climatic information, which is consistent with neighbouring profiles, will then be inferred to lie in the same partition. The geographical extent of these partitions then leads to information on the regional extent of the climatic signal. In this study, three case studies are described using synthetic and real data. The first demonstrates that the Bayesian partition model method is able to correctly partition a suite of synthetic profiles according to the inferred GST history. In the second, more realistic case, a series of temperature profiles are calculated using surface air temperatures of a global climate model simulation. In the final case, 23 real boreholes from the United Kingdom, previously used for climatic reconstructions, are examined and the results compared with a local instrumental temperature series and the previous estimate derived from the same borehole data. The results indicate that the majority (17) of the 23 boreholes are unsuitable for climatic reconstruction purposes, at least without including other thermal processes in the forward model.

A fast time-difference inverse solver for 3D EIT with application to lung imaging.

PubMed

Javaherian, Ashkan; Soleimani, Manuchehr; Moeller, Knut

2016-08-01

A class of sparse optimization techniques that require solely matrix-vector products, rather than an explicit access to the forward matrix and its transpose, has been paid much attention in the recent decade for dealing with large-scale inverse problems. This study tailors application of the so-called Gradient Projection for Sparse Reconstruction (GPSR) to large-scale time-difference three-dimensional electrical impedance tomography (3D EIT). 3D EIT typically suffers from the need for a large number of voxels to cover the whole domain, so its application to real-time imaging, for example monitoring of lung function, remains scarce since the large number of degrees of freedom of the problem extremely increases storage space and reconstruction time. This study shows the great potential of the GPSR for large-size time-difference 3D EIT. Further studies are needed to improve its accuracy for imaging small-size anomalies.

Coral Microatolls and Their Role as Fixed Biological Indicators of Holocene Sea-Level Changes

NASA Astrophysics Data System (ADS)

Woodroffe, C. D.; Smithers, S. G.; McGregor, H. V.

2008-12-01

Corals microatolls are individual colonies of massive coral that have grown up to a level at which further upward growth is constrained by exposure at low tide, and which then continue to grow outwards, resulting in a flat-topped discoid morphology. Typically, microatolls comprise a single colony of massive Porites up to several metres in diameter. Modern microatolls are living on their outer margin but are predominantly dead on their upper surface. Microatolls are fixed biological sea-level indicators of the former upper limits to coral growth providing information on sea level at several temporal scales. Fossil microatolls have been used extensively to reconstruct broad patterns of Holocene sea-level trends in the Indo-Pacific reef province. Where they are preserved at a height above that of their living counterparts in the eastern Indian Ocean, Southeast Asia, northern Australia, and across much of the equatorial Pacific Ocean, they indicate that reef flats have experienced relatively higher sea levels in the mid- and late Holocene. Progressively lower corals have been interpreted to record the fall in sea level to its present position over millennial time scales. Large specimens of microatolls can reach several metres in diameter and contain a growth record of tens to hundreds of years; the upper surfaces of these can be used to track the pattern of sea-level variation over several decades. In this paper we explore the potential for using concentric annuli and subtle undulations preserved on microatoll upper surfaces to interpret sea-level changes over decadal to millennial time scales. We demonstrate that in the central Pacific modern microatolls preserve a surface morphology that reflects oscillations of sea level associated with El Niño. We evaluate the extent to which similar fluctuations may be recorded in the morphology of Indian Ocean microatolls, and the circumstances which promote the preservation of these morphological records of sea-level change over longer time scales. We discuss the potential to reconstruct extended records of sea-level change by using geochemical signatures preserved within microatoll skeletons to improve cross-correlations between colonies, and assess the precision with which sea level can be inferred.

Full-color large-scaled computer-generated holograms for physical and non-physical objects

NASA Astrophysics Data System (ADS)

Matsushima, Kyoji; Tsuchiyama, Yasuhiro; Sonobe, Noriaki; Masuji, Shoya; Yamaguchi, Masahiro; Sakamoto, Yuji

2017-05-01

Several full-color high-definition CGHs are created for reconstructing 3D scenes including real-existing physical objects. The field of the physical objects are generated or captured by employing three techniques; 3D scanner, synthetic aperture digital holography, and multi-viewpoint images. Full-color reconstruction of high-definition CGHs is realized by RGB color filters. The optical reconstructions are presented for verifying these techniques.

Updated precipitation reconstruction (AD 1482-2012) for Huashan, north-central China

NASA Astrophysics Data System (ADS)

Chen, Feng; Zhang, Ruibo; Wang, Huiqin; Qin, Li; Yuan, Yujiang

2016-02-01

We developed a tree-ring width chronology from pine trees ( Pinus tabulaeformis and Pinus armandii) stand near the peaks of Huashan, Shaanxi, north-central China. Growth-climate response analyses showed that the radial growth of pine trees is mainly influenced by April-June precipitation. A model to reconstruct precipitation based on tree widths was constructed, accounting for 55 % of the instrumental variance during the period 1953-2012. Spatial correlation analyses between the reconstruction and observed gridded precipitation data shows that the seasonal precipitation reconstruction captures regional climatic variations over north China. Compared with the historical archives and other tree-ring records in north China, many large-scale drought events, linked to the El Niño-Southern Oscillation (ENSO), were found. Many of these events have had profound impacts on the people of north China over the past several centuries. Composite maps of sea surface temperatures and 500 hPa geopotential heights for selected extremely dry and wet years in Huashan show characteristics similar to those related to the ENSO patterns, particularly with regard to ocean and atmospheric conditions in the equatorial and north Pacific. Our 531-year precipitation reconstruction for Huashan provides a long-term perspective on current and 20th century wet and dry events in north China, and is useful to guide expectations of future variability, and helps us to address climate change.

TH-AB-202-08: A Robust Real-Time Surface Reconstruction Method On Point Clouds Captured From a 3D Surface Photogrammetry System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, W; Sawant, A; Ruan, D

2016-06-15

Purpose: Surface photogrammetry (e.g. VisionRT, C-Rad) provides a noninvasive way to obtain high-frequency measurement for patient motion monitoring in radiotherapy. This work aims to develop a real-time surface reconstruction method on the acquired point clouds, whose acquisitions are subject to noise and missing measurements. In contrast to existing surface reconstruction methods that are usually computationally expensive, the proposed method reconstructs continuous surfaces with comparable accuracy in real-time. Methods: The key idea in our method is to solve and propagate a sparse linear relationship from the point cloud (measurement) manifold to the surface (reconstruction) manifold, taking advantage of the similarity inmore » local geometric topology in both manifolds. With consistent point cloud acquisition, we propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, building the point correspondences by the iterative closest point (ICP) method. To accommodate changing noise levels and/or presence of inconsistent occlusions, we further propose a modified sparse regression (MSR) model to account for the large and sparse error built by ICP, with a Laplacian prior. We evaluated our method on both clinical acquired point clouds under consistent conditions and simulated point clouds with inconsistent occlusions. The reconstruction accuracy was evaluated w.r.t. root-mean-squared-error, by comparing the reconstructed surfaces against those from the variational reconstruction method. Results: On clinical point clouds, both the SR and MSR models achieved sub-millimeter accuracy, with mean reconstruction time reduced from 82.23 seconds to 0.52 seconds and 0.94 seconds, respectively. On simulated point cloud with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent performance despite the introduced occlusions. Conclusion: We have developed a real-time and robust surface reconstruction method on point clouds acquired by photogrammetry systems. It serves an important enabling step for real-time motion tracking in radiotherapy. This work is supported in part by NIH grant R01 CA169102-02.« less

Reconstructing the Cenozoic evolution of the mantle: Implications for mantle plume dynamics under the Pacific and Indian plates

NASA Astrophysics Data System (ADS)

Glišović, Petar; Forte, Alessandro M.

2014-03-01

The lack of knowledge of the initial thermal state of the mantle in the geological past is an outstanding problem in mantle convection. The resolution of this problem also requires the modelling of 3-D mantle evolution that yields maximum consistency with a wide suite of geophysical constraints. Quantifying the robustness of the reconstructed thermal evolution is another major concern. To solve and estimate the robustness of the time-reversed (inverse) problem of mantle convection, we analyse two different numerical techniques: the quasi-reversible (QRV) and the backward advection (BAD) methods. Our investigation extends over the 65 Myr interval encompassing the Cenozoic era using a pseudo-spectral solution for compressible-flow thermal convection in 3-D spherical geometry. We find that the two dominant issues for solving the inverse problem of mantle convection are the choice of horizontally-averaged temperature (i.e., geotherm) and mechanical surface boundary conditions. We find, in particular, that the inclusion of thermal boundary layers that yield Earth-like heat flux at the top and bottom of the mantle has a critical impact on the reconstruction of mantle evolution. We have developed a new regularisation scheme for the QRV method using a time-dependent regularisation function. This revised implementation of the QRV method delivers time-dependent reconstructions of mantle heterogeneity that reveal: (1) the stability of Pacific and African ‘large low shear velocity provinces’ (LLSVP) over the last 65 Myr; (2) strong upward deflections of the CMB topography at 65 Ma beneath: the North Atlantic, the south-central Pacific, the East Pacific Rise (EPR) and the eastern Antarctica; (3) an anchored deep-mantle plume ascending directly under the EPR (Easter and Pitcairn hotspots) throughout the Cenozoic era; and (4) the appearance of the transient Reunion plume head beneath the western edge of the Deccan Plateau at 65 Ma. Our reconstructions of Cenozoic mantle evolution thus suggest that mantle plumes play a key role in driving surface tectonic processes and large-scale volcanism.

Reconstructing a Large-Scale Population for Social Simulation

NASA Astrophysics Data System (ADS)

Fan, Zongchen; Meng, Rongqing; Ge, Yuanzheng; Qiu, Xiaogang

The advent of social simulation has provided an opportunity to research on social systems. More and more researchers tend to describe the components of social systems in a more detailed level. Any simulation needs the support of population data to initialize and implement the simulation systems. However, it's impossible to get the data which provide full information about individuals and households. We propose a two-step method to reconstruct a large-scale population for a Chinese city according to Chinese culture. Firstly, a baseline population is generated through gathering individuals into households one by one; secondly, social relationships such as friendship are assigned to the baseline population. Through a case study, a population of 3,112,559 individuals gathered in 1,133,835 households is reconstructed for Urumqi city, and the results show that the generated data can respect the real data quite well. The generated data can be applied to support modeling of some social phenomenon.

Pore-scale study of multiphase reactive transport in fibrous electrodes of vanadium redox flow batteries

DOE PAGES

Chen, Li; He, YaLing; Tao, Wen -Quan; ...

2017-07-21

The electrode of a vanadium redox flow battery generally is a carbon fibre-based porous medium, in which important physicochemical processes occur. In this work, pore-scale simulations are performed to study complex multiphase flow and reactive transport in the electrode by using the lattice Boltzmann method (LBM). Four hundred fibrous electrodes with different fibre diameters and porosities are reconstructed. Both the permeability and diffusivity of the reconstructed electrodes are predicted and compared with empirical relationships in the literature. Reactive surface area of the electrodes is also evaluated and it is found that existing empirical relationship overestimates the reactive surface under lowermore » porosities. Further, a pore-scale electrochemical reaction model is developed to study the effects of fibre diameter and porosity on electrolyte flow, V II/V III transport, and electrochemical reaction at the electrolyte-fibre surface. Finally, evolution of bubble cluster generated by the side reaction is studied by adopting a LB multiphase flow model. Effects of porosity, fibre diameter, gas saturation and solid surface wettability on average bubble diameter and reduction of reactive surface area due to coverage of bubbles on solid surface are investigated in detail. It is found that gas coverage ratio is always lower than that adopted in the continuum model in the literature. Furthermore, the current pore-scale studies successfully reveal the complex multiphase flow and reactive transport processes in the electrode, and the simulation results can be further upscaled to improve the accuracy of the current continuum-scale models.« less

Ultrafast and scalable cone-beam CT reconstruction using MapReduce in a cloud computing environment.

PubMed

Meng, Bowen; Pratx, Guillem; Xing, Lei

2011-12-01

Four-dimensional CT (4DCT) and cone beam CT (CBCT) are widely used in radiation therapy for accurate tumor target definition and localization. However, high-resolution and dynamic image reconstruction is computationally demanding because of the large amount of data processed. Efficient use of these imaging techniques in the clinic requires high-performance computing. The purpose of this work is to develop a novel ultrafast, scalable and reliable image reconstruction technique for 4D CBCT∕CT using a parallel computing framework called MapReduce. We show the utility of MapReduce for solving large-scale medical physics problems in a cloud computing environment. In this work, we accelerated the Feldcamp-Davis-Kress (FDK) algorithm by porting it to Hadoop, an open-source MapReduce implementation. Gated phases from a 4DCT scans were reconstructed independently. Following the MapReduce formalism, Map functions were used to filter and backproject subsets of projections, and Reduce function to aggregate those partial backprojection into the whole volume. MapReduce automatically parallelized the reconstruction process on a large cluster of computer nodes. As a validation, reconstruction of a digital phantom and an acquired CatPhan 600 phantom was performed on a commercial cloud computing environment using the proposed 4D CBCT∕CT reconstruction algorithm. Speedup of reconstruction time is found to be roughly linear with the number of nodes employed. For instance, greater than 10 times speedup was achieved using 200 nodes for all cases, compared to the same code executed on a single machine. Without modifying the code, faster reconstruction is readily achievable by allocating more nodes in the cloud computing environment. Root mean square error between the images obtained using MapReduce and a single-threaded reference implementation was on the order of 10(-7). Our study also proved that cloud computing with MapReduce is fault tolerant: the reconstruction completed successfully with identical results even when half of the nodes were manually terminated in the middle of the process. An ultrafast, reliable and scalable 4D CBCT∕CT reconstruction method was developed using the MapReduce framework. Unlike other parallel computing approaches, the parallelization and speedup required little modification of the original reconstruction code. MapReduce provides an efficient and fault tolerant means of solving large-scale computing problems in a cloud computing environment.

Ultrafast and scalable cone-beam CT reconstruction using MapReduce in a cloud computing environment

PubMed Central

Meng, Bowen; Pratx, Guillem; Xing, Lei

2011-01-01

Purpose: Four-dimensional CT (4DCT) and cone beam CT (CBCT) are widely used in radiation therapy for accurate tumor target definition and localization. However, high-resolution and dynamic image reconstruction is computationally demanding because of the large amount of data processed. Efficient use of these imaging techniques in the clinic requires high-performance computing. The purpose of this work is to develop a novel ultrafast, scalable and reliable image reconstruction technique for 4D CBCT/CT using a parallel computing framework called MapReduce. We show the utility of MapReduce for solving large-scale medical physics problems in a cloud computing environment. Methods: In this work, we accelerated the Feldcamp–Davis–Kress (FDK) algorithm by porting it to Hadoop, an open-source MapReduce implementation. Gated phases from a 4DCT scans were reconstructed independently. Following the MapReduce formalism, Map functions were used to filter and backproject subsets of projections, and Reduce function to aggregate those partial backprojection into the whole volume. MapReduce automatically parallelized the reconstruction process on a large cluster of computer nodes. As a validation, reconstruction of a digital phantom and an acquired CatPhan 600 phantom was performed on a commercial cloud computing environment using the proposed 4D CBCT/CT reconstruction algorithm. Results: Speedup of reconstruction time is found to be roughly linear with the number of nodes employed. For instance, greater than 10 times speedup was achieved using 200 nodes for all cases, compared to the same code executed on a single machine. Without modifying the code, faster reconstruction is readily achievable by allocating more nodes in the cloud computing environment. Root mean square error between the images obtained using MapReduce and a single-threaded reference implementation was on the order of 10−7. Our study also proved that cloud computing with MapReduce is fault tolerant: the reconstruction completed successfully with identical results even when half of the nodes were manually terminated in the middle of the process. Conclusions: An ultrafast, reliable and scalable 4D CBCT/CT reconstruction method was developed using the MapReduce framework. Unlike other parallel computing approaches, the parallelization and speedup required little modification of the original reconstruction code. MapReduce provides an efficient and fault tolerant means of solving large-scale computing problems in a cloud computing environment. PMID:22149842

Reconstructing extreme AMOC events through nudging of the ocean surface: a perfect model approach

NASA Astrophysics Data System (ADS)

Ortega, Pablo; Guilyardi, Eric; Swingedouw, Didier; Mignot, Juliette; Nguyen, Sébastien

2017-11-01

While the Atlantic Meridional Overturning Circulation (AMOC) is thought to be a crucial component of the North Atlantic climate, past changes in its strength are challenging to quantify, and only limited information is available. In this study, we use a perfect model approach with the IPSL-CM5A-LR model to assess the performance of several surface nudging techniques in reconstructing the variability of the AMOC. Special attention is given to the reproducibility of an extreme positive AMOC peak from a preindustrial control simulation. Nudging includes standard relaxation techniques towards the sea surface temperature and salinity anomalies of this target control simulation, and/or the prescription of the wind-stress fields. Surface nudging approaches using standard fixed restoring terms succeed in reproducing most of the target AMOC variability, including the timing of the extreme event, but systematically underestimate its amplitude. A detailed analysis of the AMOC variability mechanisms reveals that the underestimation of the extreme AMOC maximum comes from a deficit in the formation of the dense water masses in the main convection region, located south of Iceland in the model. This issue is largely corrected after introducing a novel surface nudging approach, which uses a varying restoring coefficient that is proportional to the simulated mixed layer depth, which, in essence, keeps the restoring time scale constant. This new technique substantially improves water mass transformation in the regions of convection, and in particular, the formation of the densest waters, which are key for the representation of the AMOC extreme. It is therefore a promising strategy that may help to better constrain the AMOC variability and other ocean features in the models. As this restoring technique only uses surface data, for which better and longer observations are available, it opens up opportunities for improved reconstructions of the AMOC over the last few decades.

Reconstructing extreme AMOC events through nudging of the ocean surface: A perfect model approach

NASA Astrophysics Data System (ADS)

Ortega, Pablo; Guilyardi, Eric; Swingedouw, Didier; Mignot, Juliette; Nguyen, Sebastien

2017-04-01

While the Atlantic Meridional Overturning Circulation (AMOC) is thought to be a crucial component of the North Atlantic climate and its predictability, past changes in its strength are challenging to quantify, and only limited information is available. In this study, we use a perfect model approach with the IPSL-CM5A-LR model to assess the performance of several surface nudging techniques in reconstructing the variability of the AMOC. Special attention is given to the reproducibility of an extreme positive AMOC peak from a preindustrial control simulation. Nudging includes standard relaxation techniques towards the sea surface temperature and salinity anomalies of this target control simulation, and/or the prescription of the wind-stress fields. Surface nudging approaches using standard fixed restoring terms succeed in reproducing most of the target AMOC variability, including the timing of the extreme event, but systematically underestimate its amplitude. A detailed analysis of the AMOC variability mechanisms reveals that the underestimation of the extreme AMOC maximum comes from a deficit in the formation of the dense water masses in the main convection region, located south of Iceland in the model. This issue is largely corrected after introducing a novel surface nudging approach, which uses a varying restoring coefficient that is proportional to the simulated mixed layer depth, which, in essence, keeps the restoring time scale constant. This new technique substantially improves water mass transformation in the regions of convection, and in particular, the formation of the densest waters, which are key for the representation of the AMOC extreme. It is therefore a promising strategy that may help to better initialize the AMOC variability and other ocean features in the models, and thus improve decadal climate predictions. As this restoring technique only uses surface data, for which better and longer observations are available, it opens up opportunities for improved reconstructions of the AMOC over the last few decades.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Li; He, YaLing; Tao, Wen -Quan

The electrode of a vanadium redox flow battery generally is a carbon fibre-based porous medium, in which important physicochemical processes occur. In this work, pore-scale simulations are performed to study complex multiphase flow and reactive transport in the electrode by using the lattice Boltzmann method (LBM). Four hundred fibrous electrodes with different fibre diameters and porosities are reconstructed. Both the permeability and diffusivity of the reconstructed electrodes are predicted and compared with empirical relationships in the literature. Reactive surface area of the electrodes is also evaluated and it is found that existing empirical relationship overestimates the reactive surface under lowermore » porosities. Further, a pore-scale electrochemical reaction model is developed to study the effects of fibre diameter and porosity on electrolyte flow, V II/V III transport, and electrochemical reaction at the electrolyte-fibre surface. Finally, evolution of bubble cluster generated by the side reaction is studied by adopting a LB multiphase flow model. Effects of porosity, fibre diameter, gas saturation and solid surface wettability on average bubble diameter and reduction of reactive surface area due to coverage of bubbles on solid surface are investigated in detail. It is found that gas coverage ratio is always lower than that adopted in the continuum model in the literature. Furthermore, the current pore-scale studies successfully reveal the complex multiphase flow and reactive transport processes in the electrode, and the simulation results can be further upscaled to improve the accuracy of the current continuum-scale models.« less

Statistical characterization of short wind waves from stereo images of the sea surface

NASA Astrophysics Data System (ADS)

Mironov, Alexey; Yurovskaya, Maria; Dulov, Vladimir; Hauser, Danièle; Guérin, Charles-Antoine

2013-04-01

We propose a methodology to extract short-scale statistical characteristics of the sea surface topography by means of stereo image reconstruction. The possibilities and limitations of the technique are discussed and tested on a data set acquired from an oceanographic platform at the Black Sea. The analysis shows that reconstruction of the topography based on stereo method is an efficient way to derive non-trivial statistical properties of surface short- and intermediate-waves (say from 1 centimer to 1 meter). Most technical issues pertaining to this type of datasets (limited range of scales, lacunarity of data or irregular sampling) can be partially overcome by appropriate processing of the available points. The proposed technique also allows one to avoid linear interpolation which dramatically corrupts properties of retrieved surfaces. The processing technique imposes that the field of elevation be polynomially detrended, which has the effect of filtering out the large scales. Hence the statistical analysis can only address the small-scale components of the sea surface. The precise cut-off wavelength, which is approximatively half the patch size, can be obtained by applying a high-pass frequency filter on the reference gauge time records. The results obtained for the one- and two-points statistics of small-scale elevations are shown consistent, at least in order of magnitude, with the corresponding gauge measurements as well as other experimental measurements available in the literature. The calculation of the structure functions provides a powerful tool to investigate spectral and statistical properties of the field of elevations. Experimental parametrization of the third-order structure function, the so-called skewness function, is one of the most important and original outcomes of this study. This function is of primary importance in analytical scattering models from the sea surface and was up to now unavailable in field conditions. Due to the lack of precise reference measurements for the small-scale wave field, we could not quantify exactly the accuracy of the retrieval technique. However, it appeared clearly that the obtained accuracy is good enough for the estimation of second-order statistical quantities (such as the correlation function), acceptable for third-order quantities (such as the skwewness function) and insufficient for fourth-order quantities (such as kurtosis). Therefore, the stereo technique in the present stage should not be thought as a self-contained universal tool to characterize the surface statistics. Instead, it should be used in conjunction with other well calibrated but sparse reference measurement (such as wave gauges) for cross-validation and calibration. It then completes the statistical analysis in as much as it provides a snapshot of the three-dimensional field and allows for the evaluation of higher-order spatial statistics.

Automatic segmentation and reconstruction of the cortex from neonatal MRI.

PubMed

Xue, Hui; Srinivasan, Latha; Jiang, Shuzhou; Rutherford, Mary; Edwards, A David; Rueckert, Daniel; Hajnal, Joseph V

2007-11-15

Segmentation and reconstruction of cortical surfaces from magnetic resonance (MR) images are more challenging for developing neonates than adults. This is mainly due to the dynamic changes in the contrast between gray matter (GM) and white matter (WM) in both T1- and T2-weighted images (T1w and T2w) during brain maturation. In particular in neonatal T2w images WM typically has higher signal intensity than GM. This causes mislabeled voxels during cortical segmentation, especially in the cortical regions of the brain and in particular at the interface between GM and cerebrospinal fluid (CSF). We propose an automatic segmentation algorithm detecting these mislabeled voxels and correcting errors caused by partial volume effects. Our results show that the proposed algorithm corrects errors in the segmentation of both GM and WM compared to the classic expectation maximization (EM) scheme. Quantitative validation against manual segmentation demonstrates good performance (the mean Dice value: 0.758+/-0.037 for GM and 0.794+/-0.078 for WM). The inner, central and outer cortical surfaces are then reconstructed using implicit surface evolution. A landmark study is performed to verify the accuracy of the reconstructed cortex (the mean surface reconstruction error: 0.73 mm for inner surface and 0.63 mm for the outer). Both segmentation and reconstruction have been tested on 25 neonates with the gestational ages ranging from approximately 27 to 45 weeks. This preliminary analysis confirms previous findings that cortical surface area and curvature increase with age, and that surface area scales to cerebral volume according to a power law, while cortical thickness is not related to age or brain growth.

ARACNe-AP: Gene Network Reverse Engineering through Adaptive Partitioning inference of Mutual Information. | Office of Cancer Genomics

Cancer.gov

The accurate reconstruction of gene regulatory networks from large scale molecular profile datasets represents one of the grand challenges of Systems Biology. The Algorithm for the Reconstruction of Accurate Cellular Networks (ARACNe) represents one of the most effective tools to accomplish this goal. However, the initial Fixed Bandwidth (FB) implementation is both inefficient and unable to deal with sample sets providing largely uneven coverage of the probability density space.

The cosmic ray muon tomography facility based on large scale MRPC detectors

NASA Astrophysics Data System (ADS)

Wang, Xuewu; Zeng, Ming; Zeng, Zhi; Wang, Yi; Zhao, Ziran; Yue, Xiaoguang; Luo, Zhifei; Yi, Hengguan; Yu, Baihui; Cheng, Jianping

2015-06-01

Cosmic ray muon tomography is a novel technology to detect high-Z material. A prototype of TUMUTY with 73.6 cm×73.6 cm large scale position sensitive MRPC detectors has been developed and is introduced in this paper. Three test kits have been tested and image is reconstructed using MAP algorithm. The reconstruction results show that the prototype is working well and the objects with complex structure and small size (20 mm) can be imaged on it, while the high-Z material is distinguishable from the low-Z one. This prototype provides a good platform for our further studies of the physical characteristics and the performances of cosmic ray muon tomography.

Hypogeal geological survey in the "Grotta del Re Tiberio" natural cave (Apennines, Italy): a valid tool for reconstructing the structural setting

NASA Astrophysics Data System (ADS)

Ghiselli, Alice; Merazzi, Marzio; Strini, Andrea; Margutti, Roberto; Mercuriali, Michele

2011-06-01

As karst systems are natural windows to the underground, speleology, combined with geological surveys, can be useful tools for helping understand the geological evolution of karst areas. In order to enhance the reconstruction of the structural setting in a gypsum karst area (Vena del Gesso, Romagna Apennines), a detailed analysis has been carried out on hypogeal data. Structural features (faults, fractures, tectonic foliations, bedding) have been mapped in the "Grotta del Re Tiberio" cave, in the nearby gypsum quarry tunnels and open pit benches. Five fracture systems and six fault systems have been identified. The fault systems have been further analyzed through stereographic projections and geometric-kinematic evaluations in order to reconstruct the relative chronology of these structures. This analysis led to the detection of two deformation phases. The results permitted linking of the hypogeal data with the surface data both at a local and regional scale. At the local scale, fracture data collected in the underground have been compared with previous authors' surface data coming from the quarry area. The two data sets show a very good correspondence, as every underground fracture system matches with one of the surface fracture system. Moreover, in the cave, a larger number of fractures belonging to each system could be mapped. At the regional scale, the two deformation phases detected can be integrated in the structural setting of the study area, thereby enhancing the tectonic interpretation of the area ( e.g., structures belonging to a new deformation phase, not reported before, have been identified underground). The structural detailed hypogeal survey has, thus, provided very useful data, both by integrating the existing information and revealing new data not detected at the surface. In particular, some small structures ( e.g., displacement markers and short fractures) are better preserved in the hypogeal environment than on the surface where the outcropping gypsum is more exposed to dissolution and recrystallization. The hypogeal geological survey, therefore, can be considered a powerful tool for integrating the surface and log data in order to enhance the reconstruction of the deformational history and to get a three-dimensional model of the bedrock in karst areas.

Multi-time-scale hydroclimate dynamics of a regional watershed and links to large-scale atmospheric circulation: Application to the Seine river catchment, France

NASA Astrophysics Data System (ADS)

Massei, N.; Dieppois, B.; Hannah, D. M.; Lavers, D. A.; Fossa, M.; Laignel, B.; Debret, M.

2017-03-01

In the present context of global changes, considerable efforts have been deployed by the hydrological scientific community to improve our understanding of the impacts of climate fluctuations on water resources. Both observational and modeling studies have been extensively employed to characterize hydrological changes and trends, assess the impact of climate variability or provide future scenarios of water resources. In the aim of a better understanding of hydrological changes, it is of crucial importance to determine how and to what extent trends and long-term oscillations detectable in hydrological variables are linked to global climate oscillations. In this work, we develop an approach associating correlation between large and local scales, empirical statistical downscaling and wavelet multiresolution decomposition of monthly precipitation and streamflow over the Seine river watershed, and the North Atlantic sea level pressure (SLP) in order to gain additional insights on the atmospheric patterns associated with the regional hydrology. We hypothesized that: (i) atmospheric patterns may change according to the different temporal wavelengths defining the variability of the signals; and (ii) definition of those hydrological/circulation relationships for each temporal wavelength may improve the determination of large-scale predictors of local variations. The results showed that the links between large and local scales were not necessarily constant according to time-scale (i.e. for the different frequencies characterizing the signals), resulting in changing spatial patterns across scales. This was then taken into account by developing an empirical statistical downscaling (ESD) modeling approach, which integrated discrete wavelet multiresolution analysis for reconstructing monthly regional hydrometeorological processes (predictand: precipitation and streamflow on the Seine river catchment) based on a large-scale predictor (SLP over the Euro-Atlantic sector). This approach basically consisted in three steps: 1 - decomposing large-scale climate and hydrological signals (SLP field, precipitation or streamflow) using discrete wavelet multiresolution analysis, 2 - generating a statistical downscaling model per time-scale, 3 - summing up all scale-dependent models in order to obtain a final reconstruction of the predictand. The results obtained revealed a significant improvement of the reconstructions for both precipitation and streamflow when using the multiresolution ESD model instead of basic ESD. In particular, the multiresolution ESD model handled very well the significant changes in variance through time observed in either precipitation or streamflow. For instance, the post-1980 period, which had been characterized by particularly high amplitudes in interannual-to-interdecadal variability associated with alternating flood and extremely low-flow/drought periods (e.g., winter/spring 2001, summer 2003), could not be reconstructed without integrating wavelet multiresolution analysis into the model. In accordance with previous studies, the wavelet components detected in SLP, precipitation and streamflow on interannual to interdecadal time-scales could be interpreted in terms of influence of the Gulf-Stream oceanic front on atmospheric circulation.

A Standardized Precipitation Evapotranspiration Index Reconstruction in the Taihe Mountains Using Tree-Ring Widths for the Last 283 Years.

PubMed

Ma, Yongyong; Liu, Yu; Song, Huiming; Sun, Junyan; Lei, Ying; Wang, Yanchao

2015-01-01

Tree-ring samples from Chinese Pine (Pinus tabulaeformis Carr.) that were collected in the Taihe Mountains on the western Loess Plateau, China, were used to analyze the effects of climate and drought on radial growth and to reconstruct the mean April-June Standardized Precipitation Evapotranspiration Index (SPEI) during the period 1730-2012 AD. Precipitation positively affected tree growth primarily during wet seasons, while temperature negatively affected tree growth during dry seasons. Tree growth responded positively to SPEI at long time scales most likely because the trees were able to withstand water deficits but lacked a rapid response to drought. The 10-month scale SPEI was chosen for further drought reconstruction. A calibration model for the period 1951-2011 explained 51% of the variance in the modeled SPEI data. Our SPEI reconstruction revealed long-term patterns of drought variability and captured some significant drought events, including the severe drought of 1928-1930 and the clear drying trend since the 1950s which were widespread across northern China. The reconstruction was also consistent with two other reconstructions on the western Loess Plateau at both interannual and decadal scales. The reconstructed SPEI series showed synchronous variations with the drought/wetness indices and spatial correlation analyses indicated that this reconstruction could be representative of large-scale SPEI variability in northern China. Period analysis discovered 128-year, 25-year, 2.62-year, 2.36-year, and 2.04-year cycles in this reconstruction. The time-dependency of the growth response to drought should be considered in further studies of the community dynamics. The SPEI reconstruction improves the sparse network of long-term climate records for an enhanced understanding of climatic variability on the western Loess Plateau, China.

A Standardized Precipitation Evapotranspiration Index Reconstruction in the Taihe Mountains Using Tree-Ring Widths for the Last 283 Years

PubMed Central

Ma, Yongyong; Liu, Yu; Song, Huiming; Sun, Junyan; Lei, Ying; Wang, Yanchao

2015-01-01

Tree-ring samples from Chinese Pine (Pinus tabulaeformis Carr.) that were collected in the Taihe Mountains on the western Loess Plateau, China, were used to analyze the effects of climate and drought on radial growth and to reconstruct the mean April-June Standardized Precipitation Evapotranspiration Index (SPEI) during the period 1730–2012 AD. Precipitation positively affected tree growth primarily during wet seasons, while temperature negatively affected tree growth during dry seasons. Tree growth responded positively to SPEI at long time scales most likely because the trees were able to withstand water deficits but lacked a rapid response to drought. The 10-month scale SPEI was chosen for further drought reconstruction. A calibration model for the period 1951–2011 explained 51% of the variance in the modeled SPEI data. Our SPEI reconstruction revealed long-term patterns of drought variability and captured some significant drought events, including the severe drought of 1928–1930 and the clear drying trend since the 1950s which were widespread across northern China. The reconstruction was also consistent with two other reconstructions on the western Loess Plateau at both interannual and decadal scales. The reconstructed SPEI series showed synchronous variations with the drought/wetness indices and spatial correlation analyses indicated that this reconstruction could be representative of large-scale SPEI variability in northern China. Period analysis discovered 128-year, 25-year, 2.62-year, 2.36-year, and 2.04-year cycles in this reconstruction. The time-dependency of the growth response to drought should be considered in further studies of the community dynamics. The SPEI reconstruction improves the sparse network of long-term climate records for an enhanced understanding of climatic variability on the western Loess Plateau, China. PMID:26207621

Anisotropic modeling and joint-MAP stitching for improved ultrasound model-based iterative reconstruction of large and thick specimens

DOE Office of Scientific and Technical Information (OSTI.GOV)

Almansouri, Hani; Venkatakrishnan, Singanallur V.; Clayton, Dwight A.

One-sided non-destructive evaluation (NDE) is widely used to inspect materials, such as concrete structures in nuclear power plants (NPP). A widely used method for one-sided NDE is the synthetic aperture focusing technique (SAFT). The SAFT algorithm produces reasonable results when inspecting simple structures. However, for complex structures, such as heavily reinforced thick concrete structures, SAFT results in artifacts and hence there is a need for a more sophisticated inversion technique. Model-based iterative reconstruction (MBIR) algorithms, which are typically equivalent to regularized inversion techniques, offer a powerful framework to incorporate complex models for the physics, detector miscalibrations and the materials beingmore » imaged to obtain high quality reconstructions. Previously, we have proposed an ultrasonic MBIR method that signifcantly improves reconstruction quality compared to SAFT. However, the method made some simplifying assumptions on the propagation model and did not disucss ways to handle data that is obtained by raster scanning a system over a surface to inspect large regions. In this paper, we propose a novel MBIR algorithm that incorporates an anisotropic forward model and allows for the joint processing of data obtained from a system that raster scans a large surface. We demonstrate that the new MBIR method can produce dramatic improvements in reconstruction quality compared to SAFT and suppresses articfacts compared to the perviously presented MBIR approach.« less

Anisotropic modeling and joint-MAP stitching for improved ultrasound model-based iterative reconstruction of large and thick specimens

NASA Astrophysics Data System (ADS)

Almansouri, Hani; Venkatakrishnan, Singanallur; Clayton, Dwight; Polsky, Yarom; Bouman, Charles; Santos-Villalobos, Hector

2018-04-01

One-sided non-destructive evaluation (NDE) is widely used to inspect materials, such as concrete structures in nuclear power plants (NPP). A widely used method for one-sided NDE is the synthetic aperture focusing technique (SAFT). The SAFT algorithm produces reasonable results when inspecting simple structures. However, for complex structures, such as heavily reinforced thick concrete structures, SAFT results in artifacts and hence there is a need for a more sophisticated inversion technique. Model-based iterative reconstruction (MBIR) algorithms, which are typically equivalent to regularized inversion techniques, offer a powerful framework to incorporate complex models for the physics, detector miscalibrations and the materials being imaged to obtain high quality reconstructions. Previously, we have proposed an ultrasonic MBIR method that signifcantly improves reconstruction quality compared to SAFT. However, the method made some simplifying assumptions on the propagation model and did not disucss ways to handle data that is obtained by raster scanning a system over a surface to inspect large regions. In this paper, we propose a novel MBIR algorithm that incorporates an anisotropic forward model and allows for the joint processing of data obtained from a system that raster scans a large surface. We demonstrate that the new MBIR method can produce dramatic improvements in reconstruction quality compared to SAFT and suppresses articfacts compared to the perviously presented MBIR approach.

Robust, Efficient Depth Reconstruction With Hierarchical Confidence-Based Matching.

PubMed

Sun, Li; Chen, Ke; Song, Mingli; Tao, Dacheng; Chen, Gang; Chen, Chun

2017-07-01

In recent years, taking photos and capturing videos with mobile devices have become increasingly popular. Emerging applications based on the depth reconstruction technique have been developed, such as Google lens blur. However, depth reconstruction is difficult due to occlusions, non-diffuse surfaces, repetitive patterns, and textureless surfaces, and it has become more difficult due to the unstable image quality and uncontrolled scene condition in the mobile setting. In this paper, we present a novel hierarchical framework with multi-view confidence-based matching for robust, efficient depth reconstruction in uncontrolled scenes. Particularly, the proposed framework combines local cost aggregation with global cost optimization in a complementary manner that increases efficiency and accuracy. A depth map is efficiently obtained in a coarse-to-fine manner by using an image pyramid. Moreover, confidence maps are computed to robustly fuse multi-view matching cues, and to constrain the stereo matching on a finer scale. The proposed framework has been evaluated with challenging indoor and outdoor scenes, and has achieved robust and efficient depth reconstruction.

Multi-centennial upper-ocean heat content reconstruction using online data assimilation

NASA Astrophysics Data System (ADS)

Perkins, W. A.; Hakim, G. J.

2017-12-01

The Last Millennium Reanalysis (LMR) provides an advanced paleoclimate ensemble data assimilation framework for multi-variate climate field reconstructions over the Common Era. Although reconstructions in this framework with full Earth system models remain prohibitively expensive, recent work has shown improved ensemble reconstruction validation using computationally inexpensive linear inverse models (LIMs). Here we leverage these techniques in pursuit of a new multi-centennial field reconstruction of upper-ocean heat content (OHC), synthesizing model dynamics with observational constraints from proxy records. OHC is an important indicator of internal climate variability and responds to planetary energy imbalances. Therefore, a consistent extension of the OHC record in time will help inform aspects of low-frequency climate variability. We use the Community Climate System Model version 4 (CCSM4) and Max Planck Institute (MPI) last millennium simulations to derive the LIMs, and the PAGES2K v.2.0 proxy database to perform annually resolved reconstructions of upper-OHC, surface air temperature, and wind stress over the last 500 years. Annual OHC reconstructions and uncertainties for both the global mean and regional basins are compared against observational and reanalysis data. We then investigate differences in dynamical behavior at decadal and longer time scales between the reconstruction and simulations in the last-millennium Coupled Model Intercomparison Project version 5 (CMIP5). Preliminary investigation of 1-year forecast skill for an OHC-only LIM shows largely positive spatial grid point local anomaly correlations (LAC) with a global average LAC of 0.37. Compared to 1-year OHC persistence forecast LAC (global average LAC of 0.30), the LIM outperforms the persistence forecasts in the tropical Indo-Pacific region, the equatorial Atlantic, and in certain regions near the Antarctic Circumpolar Current. In other regions, the forecast correlations are less than the persistence case but still positive overall.

Reconstructing the δ(18) O of atmospheric water vapour via the CAM epiphyte Tillandsia usneoides: seasonal controls on δ(18) O in the field and large-scale reconstruction of δ(18) Oa.

PubMed

Helliker, Brent R

2014-03-01

Using both oxygen isotope ratios of leaf water (δ(18) OL ) and cellulose (δ(18) OC ) of Tillandsia usneoides in situ, this paper examined how short- and long-term responses to environmental variation and model parameterization affected the reconstruction of the atmospheric water vapour (δ(18) Oa ). During sample-intensive field campaigns, predictions of δ(18) OL matched observations well using a non-steady-state model, but the model required data-rich parameterization. Predictions from the more easily parameterized maximum enrichment model (δ(18) OL-M ) matched observed δ(18) OL and observed δ(18) Oa when leaf water turnover was less than 3.5 d. Using the δ(18) OL-M model and weekly samples of δ(18) OL across two growing seasons in Florida, USA, reconstructed δ(18) Oa was -12.6 ± 0.3‰. This is compared with δ(18) Oa of -12.4 ± 0.2‰ resolved from the growing-season-weighted δ(18) OC . Both of these values were similar to δ(18) Oa in equilibrium with precipitation, -12.9‰. δ(18) Oa was also reconstructed through a large-scale transect with δ(18) OL and the growing-season-integrated δ(18) OC across the southeastern United States. There was considerable large-scale variation, but there was regional, weather-induced coherence in δ(18) Oa when using δ(18) OL . The reconstruction of δ(18) Oa with δ(18) OC generally supported the assumption of δ(18) Oa being in equilibrium with precipitation δ(18) O (δ(18) Oppt ), but the pool of δ(18) Oppt with which δ(18) Oa was in equilibrium - growing season versus annual δ(18) Oppt - changed with latitude. © 2013 John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Hanlei; May, Brian M.; Serrano-Sevillano, Jon

The surface configuration of pristine layered oxide cathode particles for Li-ion batteries significantly affects the electrochemical behavior, which is generally considered to be a thin rock-salt layer in the surface. Unfortunately, aside from its thin nature and spatial location on the surface, the true structural nature of this surface rock-salt layer remains largely unknown, creating the need to understand its configuration and the underlying mechanisms of formation. Using scanning transmission electron microscopy, we have found a correlation between the surface rock-salt formation and the crystal facets on pristine LiNi0.80Co0.15Al0.05O2 primary particles. It is found that the originally (01more » $$ \\overline{4}\\ $$) and (003) surfaces of the layered phase result in two kinds of rock-salt reconstructions: the (002) and (111) rock-salt surfaces, respectively. Stepped surface configurations are generated for both reconstructions. The (002) configuration is relatively flat with monoatomic steps while the (111) configuration shows significant surface roughening. Both reconstructions reduce the ionic and electronic conductivity of the cathode, leading to a reduced electrochemical performance.« less

On retrodictions of global mantle flow with assimilated surface velocities

NASA Astrophysics Data System (ADS)

Colli, Lorenzo; Bunge, Hans-Peter; Schuberth, Bernhard S. A.

2016-04-01

Modeling past states of Earth's mantle and relating them to geologic observations such as continental-scale uplift and subsidence is an effective method for testing mantle convection models. However, mantle convection is chaotic and two identical mantle models initialized with slightly different temperature fields diverge exponentially in time until they become uncorrelated, thus limiting retrodictions (i.e., reconstructions of past states of Earth's mantle obtained using present information) to the recent past. We show with 3-D spherical mantle convection models that retrodictions of mantle flow can be extended significantly if knowledge of the surface velocity field is available. Assimilating surface velocities produces in some cases negative Lyapunov times (i.e., e-folding times), implying that even a severely perturbed initial condition may evolve toward the reference state. A history of the surface velocity field for Earth can be obtained from past plate motion reconstructions for time periods of a mantle overturn, suggesting that mantle flow can be reconstructed over comparable times.

On retrodictions of global mantle flow with assimilated surface velocities

NASA Astrophysics Data System (ADS)

Colli, Lorenzo; Bunge, Hans-Peter; Schuberth, Bernhard S. A.

2015-10-01

Modeling past states of Earth's mantle and relating them to geologic observations such as continental-scale uplift and subsidence is an effective method for testing mantle convection models. However, mantle convection is chaotic and two identical mantle models initialized with slightly different temperature fields diverge exponentially in time until they become uncorrelated, thus limiting retrodictions (i.e., reconstructions of past states of Earth's mantle obtained using present information) to the recent past. We show with 3-D spherical mantle convection models that retrodictions of mantle flow can be extended significantly if knowledge of the surface velocity field is available. Assimilating surface velocities produces in some cases negative Lyapunov times (i.e., e-folding times), implying that even a severely perturbed initial condition may evolve toward the reference state. A history of the surface velocity field for Earth can be obtained from past plate motion reconstructions for time periods of a mantle overturn, suggesting that mantle flow can be reconstructed over comparable times.

Modeling aspects of the surface reconstruction problem

NASA Astrophysics Data System (ADS)

Toth, Charles K.; Melykuti, Gabor

1994-08-01

The ultimate goal of digital photogrammetry is to automatically produce digital maps which may in turn form the basis of GIS. Virtually all work in surface reconstruction deals with various kinds of approximations and constraints that are applied. In this paper we extend these concepts in various ways. For one, matching is performed in object space. Thus, matching and densification (modeling) is performed in the same reference system. Another extension concerns the solution of the second sub-problem. Rather than simply densifying (interpolating) the surface, we propose to model it. This combined top-down and bottom-up approach is performed in scale space, whereby the model is refined until compatibility between the data and expectations is reached. The paper focuses on the modeling aspects of the surface reconstruction problem. Obviously, the top-down and bottom-up model descriptions ought to be in a form which allows the generation and verification of hypotheses. Another crucial question is the degree of a priori scene knowledge necessary to constrain the solution space.

Anisotropy of the Seebeck Coefficient in the Cuprate Superconductor YBa2 Cu3 Oy : Fermi-Surface Reconstruction by Bidirectional Charge Order

NASA Astrophysics Data System (ADS)

Cyr-Choinière, O.; Badoux, S.; Grissonnanche, G.; Michon, B.; Afshar, S. A. A.; Fortier, S.; LeBoeuf, D.; Graf, D.; Day, J.; Bonn, D. A.; Hardy, W. N.; Liang, R.; Doiron-Leyraud, N.; Taillefer, Louis

2017-07-01

The Seebeck coefficient S of the cuprate YBa2 Cu3 Oy is measured in magnetic fields large enough to suppress superconductivity, at hole dopings p =0.11 and p =0.12 , for heat currents along the a and b directions of the orthorhombic crystal structure. For both directions, S /T decreases and becomes negative at low temperature, a signature that the Fermi surface undergoes a reconstruction due to broken translational symmetry. Above a clear threshold field, a strong new feature appears in Sb, for conduction along the b axis only. We attribute this feature to the onset of 3D-coherent unidirectional charge-density-wave modulations seen by x-ray diffraction, also along the b axis only. Because these modulations have a sharp onset temperature well below the temperature where S /T starts to drop towards negative values, we infer that they are not the cause of Fermi-surface reconstruction. Instead, the reconstruction must be caused by the quasi-2D bidirectional modulations that develop at significantly higher temperature. The unidirectional order only confers an additional anisotropy to the already reconstructed Fermi surface, also manifest as an in-plane anisotropy of the resistivity.

Bias to CMB lensing reconstruction from temperature anisotropies due to large-scale galaxy motions

NASA Astrophysics Data System (ADS)

Ferraro, Simone; Hill, J. Colin

2018-01-01

Gravitational lensing of the cosmic microwave background (CMB) is expected to be amongst the most powerful cosmological tools for ongoing and upcoming CMB experiments. In this work, we investigate a bias to CMB lensing reconstruction from temperature anisotropies due to the kinematic Sunyaev-Zel'dovich (kSZ) effect, that is, the Doppler shift of CMB photons induced by Compton scattering off moving electrons. The kSZ signal yields biases due to both its own intrinsic non-Gaussianity and its nonzero cross-correlation with the CMB lensing field (and other fields that trace the large-scale structure). This kSZ-induced bias affects both the CMB lensing autopower spectrum and its cross-correlation with low-redshift tracers. Furthermore, it cannot be removed by multifrequency foreground separation techniques because the kSZ effect preserves the blackbody spectrum of the CMB. While statistically negligible for current data sets, we show that it will be important for upcoming surveys, and failure to account for it can lead to large biases in constraints on neutrino masses or the properties of dark energy. For a stage 4 CMB experiment, the bias can be as large as ≈15 % or 12% in cross-correlation with LSST galaxy lensing convergence or galaxy overdensity maps, respectively, when the maximum temperature multipole used in the reconstruction is ℓmax=4000 , and about half of that when ℓmax=3000 . Similarly, we find that the CMB lensing autopower spectrum can be biased by up to several percent. These biases are many times larger than the expected statistical errors. We validate our analytical predictions with cosmological simulations and present the first complete estimate of secondary-induced CMB lensing biases. The predicted bias is sensitive to the small-scale gas distribution, which is affected by pressure and feedback mechanisms, thus making removal via "bias-hardened" estimators challenging. Reducing ℓmax can significantly mitigate the bias at the cost of a decrease in the overall lensing reconstruction signal-to-noise. A bias ≲1 % on large scales requires ℓmax≲2000 , which leads to a reduction in signal-to-noise by a factor of ≈3 - 5 for a stage 4 CMB experiment. Polarization-only reconstruction may be the most robust mitigation strategy.

An Interactive Virtual 3D Tool for Scientific Exploration of Planetary Surfaces

NASA Astrophysics Data System (ADS)

Traxler, Christoph; Hesina, Gerd; Gupta, Sanjeev; Paar, Gerhard

2014-05-01

In this paper we present an interactive 3D visualization tool for scientific analysis and planning of planetary missions. At the moment scientists have to look at individual camera images separately. There is no tool to combine them in three dimensions and look at them seamlessly as a geologist would do (by walking backwards and forwards resulting in different scales). For this reason a virtual 3D reconstruction of the terrain that can be interactively explored is necessary. Such a reconstruction has to consider multiple scales ranging from orbital image data to close-up surface image data from rover cameras. The 3D viewer allows seamless zooming between these various scales, giving scientists the possibility to relate small surface features (e.g. rock outcrops) to larger geological contexts. For a reliable geologic assessment a realistic surface rendering is important. Therefore the material properties of the rock surfaces will be considered for real-time rendering. This is achieved by an appropriate Bidirectional Reflectance Distribution Function (BRDF) estimated from the image data. The BRDF is implemented to run on the Graphical Processing Unit (GPU) to enable realistic real-time rendering, which allows a naturalistic perception for scientific analysis. Another important aspect for realism is the consideration of natural lighting conditions, which means skylight to illuminate the reconstructed scene. In our case we provide skylights from Mars and Earth, which allows switching between these two modes of illumination. This gives geologists the opportunity to perceive rock outcrops from Mars as they would appear on Earth facilitating scientific assessment. Besides viewing the virtual reconstruction on multiple scales, scientists can also perform various measurements, i.e. geo-coordinates of a selected point or distance between two surface points. Rover or other models can be placed into the scene and snapped onto certain location of the terrain. These are important features to support the planning of rover paths. In addition annotations can be placed directly into the 3D scene, which also serve as landmarks to aid navigation. The presented visualization and planning tool is a valuable asset for scientific analysis of planetary mission data. It complements traditional methods by giving access to an interactive virtual 3D reconstruction, which is realistically rendered. Representative examples and further information about the interactive 3D visualization tool can be found on the FP7-SPACE Project PRoViDE web page http://www.provide-space.eu/interactive-virtual-3d-tool/. The research leading to these results has received funding from the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement n° 312377 'PRoViDE'.

Physical Modeling of Flow Over Gale Crater, Mars: Laboratory Measurements of Basin Secondary Circulations

NASA Astrophysics Data System (ADS)

Bristow, N.; Blois, G.; Kim, T.; Anderson, W.; Day, M. D.; Kocurek, G.; Christensen, K. T.

2017-12-01

Impact craters, common large-scale topographic features on the surface of Mars, are circular depressions delimited by a sharp ridge. A variety of crater fill morphologies exist, suggesting that complex intracrater circulations affect their evolution. Some large craters (diameter > 10 km), particularly at mid latitudes on Mars, exhibit a central mound surrounded by circular moat. Foremost among these examples is Gale crater, landing site of NASA's Curiosity rover, since large-scale climatic processes early in in the history of Mars are preserved in the stratigraphic record of the inner mound. Investigating the intracrater flow produced by large scale winds aloft Mars craters is key to a number of important scientific issues including ongoing research on Mars paleo-environmental reconstruction and the planning of future missions (these results must be viewed in conjunction with the affects of radial katabatibc flows, the importance of which is already established in preceding studies). In this work we consider a number of crater shapes inspired by Gale morphology, including idealized craters. Access to the flow field within such geometrically complex topography is achieved herein using a refractive index matched approach. Instantaneous velocity maps, using both planar and volumetric PIV techniques, are presented to elucidate complex three-dimensional flow within the crater. In addition, first- and second-order statistics will be discussed in the context of wind-driven (aeolian) excavation of crater fill.

South Pole Hydrogen Distribution for Present Lunar Conditions: Implications for Past Impacts

NASA Technical Reports Server (NTRS)

Elphic, R. C.; Paige, D. A.; Siegler, M. A.; Vasavada, A. R.; Eke, V. R.; Teodoro, L. F. A.; Lawrence, D. J.

2010-01-01

It has been known since the Lunar Prospector mission that the poles of the Moon evidently harbor enhanced concentrations of hydrogen [1,2]. The physical and chemical form of the hydrogen has been much debated. Using imagery from Clementine it was possible to roughly estimate permanently-shadowed regions (PSRs), and to perform image reconstructions of the Lunar Prospector epithermal neutron flux maps [3,4]. The hydrogen concentrations resulting from these reconstructions were consistent with a few weight percent water ice in selected locations. With the LCROSS impact, we now know that hydrogen in the form of ice does exist in lunar polar cold traps [5]. Armed with this information, and new data from LRO/Diviner, we can examine whether the pre-sent-day distribution of hydrogen in the form of water ice is consistent with a past large impact that delivered a large mass of volatiles to the lunar surface. These volatiles, mixed with solid impact ejecta, would then be lost from locations having high mean temperatures but would otherwise remain trapped in locations with sufficiently low mean annual temperatures [6]. The time scales for loss would depend on the location-dependent temperatures as well as impact history.

Multiscale combination of climate model simulations and proxy records over the last millennium

NASA Astrophysics Data System (ADS)

Chen, Xin; Xing, Pei; Luo, Yong; Nie, Suping; Zhao, Zongci; Huang, Jianbin; Tian, Qinhua

2018-05-01

To highlight the compatibility of climate model simulation and proxy reconstruction at different timescales, a timescale separation merging method combining proxy records and climate model simulations is presented. Annual mean surface temperature anomalies for the last millennium (851-2005 AD) at various scales over the land of the Northern Hemisphere were reconstructed with 2° × 2° spatial resolution, using an optimal interpolation (OI) algorithm. All target series were decomposed using an ensemble empirical mode decomposition method followed by power spectral analysis. Four typical components were obtained at inter-annual, decadal, multidecadal, and centennial timescales. A total of 323 temperature-sensitive proxy chronologies were incorporated after screening for each component. By scaling the proxy components using variance matching and applying a localized OI algorithm to all four components point by point, we obtained merged surface temperatures. Independent validation indicates that the most significant improvement was for components at the inter-annual scale, but this became less evident with increasing timescales. In mid-latitude land areas, 10-30% of grids were significantly corrected at the inter-annual scale. By assimilating the proxy records, the merged results reduced the gap in response to volcanic forcing between a pure reconstruction and simulation. Difficulty remained in verifying the centennial information and quantifying corresponding uncertainties, so additional effort should be devoted to this aspect in future research.

Genetic Diversity of Globally Dispersed Lacustrine Group I Haptophytes: Implications for Quantitative Temperature Reconstructions

NASA Astrophysics Data System (ADS)

Richter, N.; Longo, W. M.; Amaral-Zettler, L. A.; Huang, Y.

2017-12-01

There are significant uncertainties surrounding the forcings that drive terrestrial temperature changes on local and regional scales. Quantitative temperature reconstructions from terrestrial sites, such as lakes, help to unravel the fundamental processes that drive changes in temperature on different temporal and spatial scales. Recent studies at Brown University show that distinct alkenones, long chain ketones produced by haptophytes, are found in many freshwater, alkaline lakes in the Northern Hemisphere, highlighting these systems as targets for quantitative continental temperature reconstructions. These freshwater alkenones are produced by the Group I haptophyte phylotype and are characterized by a distinct signature: the presence of isomeric tri-unsaturated ketones and absence of alkenoates. There are currently no cultured representatives of the "Group I" haptophytes, hence they are only known based on their rRNA gene signatures. Here we present robust evidence that Northern Hemispheric freshwater, alkaline lakes with the characteristic "Group I" alkenone signature all host the same clade of Isochrysidales haptophytes. We employed next generation DNA amplicon sequencing to target haptophyte specific hypervariable regions of the large and small-subunit ribosomal RNA gene from 13 different lakes from three continents (i.e., North America, Europe, and Asia). Combined with previously published sequences, our genetic data show that the Group I haptophyte is genetically diverse on a regional and global scale, and even within the same lake. We present two case studies from a suite of five lakes in Alaska and three in Iceland to assess the impact of various environmental factors affecting Group I diversity and alkenone production. Despite the genetic diversity in this group, the overall ketone signature is conserved. Based on global surface sediment samples and in situ Alaskan lake calibrations, alkenones produced by different operational taxonomic units of the Group I haptophytes appear to display consistent responses to temperature changes, and thus can be used for paleotemperature reconstructions with a universally defined calibration.

Dense GPU-enhanced surface reconstruction from stereo endoscopic images for intraoperative registration.

PubMed

Rohl, Sebastian; Bodenstedt, Sebastian; Suwelack, Stefan; Dillmann, Rudiger; Speidel, Stefanie; Kenngott, Hannes; Muller-Stich, Beat P

2012-03-01

In laparoscopic surgery, soft tissue deformations substantially change the surgical site, thus impeding the use of preoperative planning during intraoperative navigation. Extracting depth information from endoscopic images and building a surface model of the surgical field-of-view is one way to represent this constantly deforming environment. The information can then be used for intraoperative registration. Stereo reconstruction is a typical problem within computer vision. However, most of the available methods do not fulfill the specific requirements in a minimally invasive setting such as the need of real-time performance, the problem of view-dependent specular reflections and large curved areas with partly homogeneous or periodic textures and occlusions. In this paper, the authors present an approach toward intraoperative surface reconstruction based on stereo endoscopic images. The authors describe our answer to this problem through correspondence analysis, disparity correction and refinement, 3D reconstruction, point cloud smoothing and meshing. Real-time performance is achieved by implementing the algorithms on the gpu. The authors also present a new hybrid cpu-gpu algorithm that unifies the advantages of the cpu and the gpu version. In a comprehensive evaluation using in vivo data, in silico data from the literature and virtual data from a newly developed simulation environment, the cpu, the gpu, and the hybrid cpu-gpu versions of the surface reconstruction are compared to a cpu and a gpu algorithm from the literature. The recommended approach toward intraoperative surface reconstruction can be conducted in real-time depending on the image resolution (20 fps for the gpu and 14fps for the hybrid cpu-gpu version on resolution of 640 × 480). It is robust to homogeneous regions without texture, large image changes, noise or errors from camera calibration, and it reconstructs the surface down to sub millimeter accuracy. In all the experiments within the simulation environment, the mean distance to ground truth data is between 0.05 and 0.6 mm for the hybrid cpu-gpu version. The hybrid cpu-gpu algorithm shows a much more superior performance than its cpu and gpu counterpart (mean distance reduction 26% and 45%, respectively, for the experiments in the simulation environment). The recommended approach for surface reconstruction is fast, robust, and accurate. It can represent changes in the intraoperative environment and can be used to adapt a preoperative model within the surgical site by registration of these two models.

Direct observation for atomically flat and ordered vertical {111} side-surfaces on three-dimensionally figured Si(110) substrate using scanning tunneling microscopy

NASA Astrophysics Data System (ADS)

Yang, Haoyu; Hattori, Azusa N.; Ohata, Akinori; Takemoto, Shohei; Hattori, Ken; Daimon, Hiroshi; Tanaka, Hidekazu

2017-11-01

A three-dimensional Si{111} vertical side-surface structure on a Si(110) wafer was fabricated by reactive ion etching (RIE) followed by wet-etching and flash-annealing treatments. The side-surface was studied with scanning tunneling microscopy (STM) in atomic scale for the first time, in addition to atomic force microscopy (AFM), scanning electron microscopy (SEM), and low-energy electron diffraction (LEED). AFM and SEM showed flat and smooth vertical side-surfaces without scallops, and STM proved the realization of an atomically-flat 7 × 7-reconstructed structure, under optimized RIE and wet-etching conditions. STM also showed that a step-bunching occurred on the produced {111} side-surface corresponding to a reversely taped side-surface with a tilt angle of a few degrees, but did not show disordered structures. Characteristic LEED patterns from both side- and top-reconstructed surfaces were also demonstrated.

A scanning tunnelling microscopy study of C and N adsorption phases on the vicinal Ni(100) surfaces Ni(810) and Ni(911)

NASA Astrophysics Data System (ADS)

Driver, S. M.; Toomes, R. L.; Woodruff, D. P.

2016-04-01

The influence of N and C chemisorption on the morphology and local structure of nominal Ni(810) and Ni(911) surfaces, both vicinal to (100) but with [001] and [ 01 1 bar ] step directions, respectively, has been investigated using scanning tunnelling microscopy (STM) and low energy electron diffraction. Ni(911) undergoes substantial step bunching in the presence of both adsorbates, with the (911)/N surface showing (411) facets, whereas for Ni(810), multiple steps 2-4 layers high are more typical. STM atomic-scale images show the (2 × 2)pg 'clock' reconstruction on the (100) terraces of the (810) surfaces with both C and N, although a second c(2 × 2) structure, most readily reconciled with a 'rumpling' reconstruction, is also seen on Ni(810)/N. On Ni(911), the clock reconstruction is not seen on the (100) terraces with either adsorbate, and these images are typified by protrusions on a (1 × 1) mesh. This absence of clock reconstruction is attributed to the different constraints imposed on the lateral movements of the surface Ni atoms adjacent to the up-step edge of the terraces with a [ 01 1 bar ] step direction.

Opposing effects of humidity on rhodochrosite surface oxidation.

PubMed

Na, Chongzheng; Tang, Yuanzhi; Wang, Haitao; Martin, Scot T

2015-03-03

Rhodochrosite (MnCO3) is a model mineral representing carbonate aerosol particles containing redox-active elements that can influence particle surface reconstruction in humid air, thereby affecting the heterogeneous transformation of important atmospheric constituents such as nitric oxides, sulfur dioxides, and organic acids. Using in situ atomic force microscopy, we show that the surface reconstruction of rhodochrosite in humid oxygen leads to the formation and growth of oxide nanostructures. The oxidative reconstruction consists of two consecutive processes with distinctive time scales, including a long waiting period corresponding to slow nucleation and a rapid expansion phase corresponding to fast growth. By varying the relative humidity from 55 to 78%, we further show that increasing humidity has opposing effects on the two processes, accelerating nucleation from 2.8(±0.2) × 10(-3) to 3.0(±0.2) × 10(-2) h(-1) but decelerating growth from 7.5(±0.3) × 10(-3) to 3.1(±0.1) × 10(-3) μm(2) h(-1). Through quantitative analysis, we propose that nanostructure nucleation is controlled by rhodochrosite surface dissolution, similar to the dissolution-precipitation mechanism proposed for carbonate mineral surface reconstruction in aqueous solution. To explain nanostructure growth in humid oxygen, a new Cabrera-Mott mechanism involving electron tunneling and solid-state diffusion is proposed.

Speckle interferometry of asteroids

NASA Technical Reports Server (NTRS)

Drummond, Jack

1988-01-01

By studying the image two-dimensional power spectra or autocorrelations projected by an asteroid as it rotates, it is possible to locate its rotational pole and derive its three axes dimensions through speckle interferometry under certain assumptions of uniform, geometric scattering, and triaxial ellipsoid shape. However, in cases where images can be reconstructed, the need for making the assumptions is obviated. Furthermore, the ultimate goal for speckle interferometry of image reconstruction will lead to mapping albedo features (if they exist) as impact areas or geological units. The first glimpses of the surface of an asteroid were obtained from images of 4 Vesta reconstructed from speckle interferometric observations. These images reveal that Vesta is quite Moon-like in having large hemispheric-scale albedo features. All of its lightcurves can be produced from a simple model developed from the images. Although undoubtedly more intricate than the model, Vesta's lightcurves can be matched by a model with three dark and four bright spots. The dark areas so dominate one hemisphere that a lightcurve minimum occurs when the maximum cross-section area is visible. The triaxial ellipsoid shape derived for Vesta is not consistent with the notion that the asteroid has an equilibrium shape in spite of its having apparently been differentiated.

Automated 3D architecture reconstruction from photogrammetric structure-and-motion: A case study of the One Pilla pagoda, Hanoi, Vienam

NASA Astrophysics Data System (ADS)

To, T.; Nguyen, D.; Tran, G.

2015-04-01

Heritage system of Vietnam has decline because of poor-conventional condition. For sustainable development, it is required a firmly control, space planning organization, and reasonable investment. Moreover, in the field of Cultural Heritage, the use of automated photogrammetric systems, based on Structure from Motion techniques (SfM), is widely used. With the potential of high-resolution, low-cost, large field of view, easiness, rapidity and completeness, the derivation of 3D metric information from Structure-and- Motion images is receiving great attention. In addition, heritage objects in form of 3D physical models are recorded not only for documentation issues, but also for historical interpretation, restoration, cultural and educational purposes. The study suggests the archaeological documentation of the "One Pilla" pagoda placed in Hanoi capital, Vietnam. The data acquired through digital camera Cannon EOS 550D, CMOS APS-C sensor 22.3 x 14.9 mm. Camera calibration and orientation were carried out by VisualSFM, CMPMVS (Multi-View Reconstruction) and SURE (Photogrammetric Surface Reconstruction from Imagery) software. The final result represents a scaled 3D model of the One Pilla Pagoda and displayed different views in MeshLab software.

A point-by-point multi-scale surface temperature reconstruction method and tests by pseudo proxy experiments

NASA Astrophysics Data System (ADS)

Chen, X.

2016-12-01

This study present a multi-scale approach combining Mode Decomposition and Variance Matching (MDVM) method and basic process of Point-by-Point Regression (PPR) method. Different from the widely applied PPR method, the scanning radius for each grid box, were re-calculated considering the impact from topography (i.e. mean altitudes and fluctuations). Thus, appropriate proxy records were selected to be candidates for reconstruction. The results of this multi-scale methodology could not only provide the reconstructed gridded temperature, but also the corresponding uncertainties of the four typical timescales. In addition, this method can bring in another advantage that spatial distribution of the uncertainty for different scales could be quantified. To interpreting the necessity of scale separation in calibration, with proxy records location over Eastern Asia, we perform two sets of pseudo proxy experiments (PPEs) based on different ensembles of climate model simulation. One consist of 7 simulated results by 5 models (BCC-CSM1-1, CSIRO-MK3L-1-2, HadCM3, MPI-ESM-P, and Giss-E2-R) of the "past1000" simulation from Coupled Model Intercomparison Project Phase 5. The other is based on the simulations of Community Earth System Model Last Millennium Ensemble (CESM-LME). The pseudo-records network were obtained by adding the white noise with signal-to-noise ratio (SNR) increasing from 0.1 to 1.0 to the simulated true state and the locations mainly followed the PAGES-2k network in Asia. Totally, 400 years (1601-2000) simulation was used for calibration and 600 years (1001-1600) for verification. The reconstructed results were evaluated by three metrics 1) root mean squared error (RMSE), 2) correlation and 3) reduction of error (RE) score. The PPE verification results have shown that, in comparison with ordinary linear calibration method (variance matching), the RMSE and RE score of PPR-MDVM are improved, especially for the area with sparse proxy records. To be noted, in some periods with large volcanic activities, the RMSE of MDVM get larger than VM for higher SNR cases. It should be inferred that the volcanic eruptions might blur the intrinsic characteristics of multi-scales variabilities of the climate system and the MDVM method would show less advantage in that case.

May–June Maximum Temperature Reconstruction from Mean Earlywood Density in North Central China and Its Linkages to the Summer Monsoon Activities

PubMed Central

Chen, Feng; Yuan, Yujiang

2014-01-01

Cores of Pinus tabulaformis from Tianshui were subjected to densitometric analysis to obtain mean earlywood density data. Climate response analysis indicates that May–June maximum temperature is the main factor limiting the mean earlywood density (EWD) of Chinese pine trees in the Shimen Mountains. Based on the EWD chronology, we have reconstructed May–June maximum temperature 1666 to 2008 for Tianshui, north central China. The reconstruction explains 40.1% of the actual temperature variance during the common period 1953–2008. The temperature reconstruction is representative of temperature conditions over a large area to the southeast and northwest of the sampling site. Preliminary analysis of links between large-scale climatic variation and the temperature reconstruction shows that there is a relationship between extremes in spring temperature and anomalous atmospheric circulation in the region. It is thus revealed that the mean earlywood density chronology of Pinus tabulaformis has enough potential to reconstruct the temperature variability further into the past. PMID:25207554

Long-term magnetic field monitoring of the Sun-like star ξ Bootis A

NASA Astrophysics Data System (ADS)

Morgenthaler, A.; Petit, P.; Saar, S.; Solanki, S. K.; Morin, J.; Marsden, S. C.; Aurière, M.; Dintrans, B.; Fares, R.; Gastine, T.; Lanoux, J.; Lignières, F.; Paletou, F.; Ramírez Vélez, J. C.; Théado, S.; Van Grootel, V.

2012-04-01

Aims: We aim to investigate the long-term temporal evolution of the magnetic field of the solar-type star ξ Bootis A, both from direct magnetic field measurements and from the simultaneous estimate of indirect activity indicators. Methods: We obtained seven epochs of high-resolution, circularly-polarized spectra from the NARVAL spectropolarimeter between 2007 and 2011, for a total of 76 spectra. Using approximately 6100 photospheric spectral lines covering the visible domain, we employed a cross-correlation procedure to compute a mean polarized line profile from each spectrum. The large-scale photospheric magnetic field of the star was then modelled by means of Zeeman-Doppler Imaging, allowing us to follow the year-to-year evolution of the reconstructed magnetic topology. Simultaneously, we monitored the width of several magnetically sensitive spectral lines, the radial velocity, the line asymmetry of intensity line profiles, and the chromospheric emission in the cores of the Ca II H and Hα lines. Results: During the highest observed activity states, in 2007 and 2011, the large-scale field of ξ Bootis A is almost completely axisymmetric and is dominated by its toroidal component. The toroidal component persists with a constant polarity, containing a significant fraction of the magnetic energy of the large-scale surface field through all observing epochs. The magnetic topologies reconstructed for these activity maxima are very similar, suggesting a form of short cyclicity in the large-scale field distribution. The mean unsigned large-scale magnetic flux derived from the magnetic maps varies by a factor of about 2 between the lowest and highest observed magnetic states. The chromospheric flux is less affected and varies by a factor of 1.2. Correlated temporal evolution, due to both rotational modulation and seasonal variability, is observed between the Ca II emission, the Hα emission and the width of magnetically sensitive lines. The rotational dependence of polarimetric magnetic measurements displays a weak correlation with other activity proxies, presumably due to the different spatial scales and centre-to-limb darkening associated with polarimetric signatures, as compared to non-polarized activity indicators. Better agreement is observed on the longer term. When measurable, the differential rotation reveals a strong latitudinal shear in excess of 0.2 rad d-1. Based on observations obtained at the Bernard Lyot Telescope (TBL, Pic du Midi, France) of the Midi-Pyrénées Observatory, which is operated by the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique of France.Tables 3-6 are available in electronic form at http://www.aanda.org

The Herschel-ATLAS: magnifications and physical sizes of 500-μm-selected strongly lensed galaxies

NASA Astrophysics Data System (ADS)

Enia, A.; Negrello, M.; Gurwell, M.; Dye, S.; Rodighiero, G.; Massardi, M.; De Zotti, G.; Franceschini, A.; Cooray, A.; van der Werf, P.; Birkinshaw, M.; Michałowski, M. J.; Oteo, I.

2018-04-01

We perform lens modelling and source reconstruction of Sub-millimetre Array (SMA) data for a sample of 12 strongly lensed galaxies selected at 500μm in the Herschel Astrophysical Terahertz Large Area Survey (H-ATLAS). A previous analysis of the same data set used a single Sérsic profile to model the light distribution of each background galaxy. Here we model the source brightness distribution with an adaptive pixel scale scheme, extended to work in the Fourier visibility space of interferometry. We also present new SMA observations for seven other candidate lensed galaxies from the H-ATLAS sample. Our derived lens model parameters are in general consistent with previous findings. However, our estimated magnification factors, ranging from 3 to 10, are lower. The discrepancies are observed in particular where the reconstructed source hints at the presence of multiple knots of emission. We define an effective radius of the reconstructed sources based on the area in the source plane where emission is detected above 5σ. We also fit the reconstructed source surface brightness with an elliptical Gaussian model. We derive a median value reff ˜ 1.77 kpc and a median Gaussian full width at half-maximum ˜1.47 kpc. After correction for magnification, our sources have intrinsic star formation rates (SFR) ˜ 900-3500 M⊙ yr-1, resulting in a median SFR surface density ΣSFR ˜ 132 M⊙ yr-1 kpc-2 (or ˜218 M⊙ yr-1 kpc-2 for the Gaussian fit). This is consistent with that observed for other star-forming galaxies at similar redshifts, and is significantly below the Eddington limit for a radiation pressure regulated starburst.

Exploring changes in vertical ice extent along the margin of the East Antarctic Ice Sheet in western Dronning Maud Land - initial results of the MAGIC-DML collaboration

NASA Astrophysics Data System (ADS)

Lifton, N. A.; Newall, J. C.; Fredin, O.; Glasser, N. F.; Fabel, D.; Rogozhina, I.; Bernales, J.; Prange, M.; Sams, S.; Eisen, O.; Hättestrand, C.; Harbor, J.; Stroeven, A. P.

2017-12-01

Numerical ice sheet models constrained by theory and refined by comparisons with observational data are a central component of work to address the interactions between the cryosphere and changing climate, at a wide range of scales. Such models are tested and refined by comparing model predictions of past ice geometries with field-based reconstructions from geological, geomorphological, and ice core data. However, on the East Antarctic Ice sheet, there are few empirical data with which to reconstruct changes in ice sheet geometry in the Dronning Maud Land (DML) region. In addition, there is poor control on the regional climate history of the ice sheet margin, because ice core locations, where detailed reconstructions of climate history exist, are located on high inland domes. This leaves numerical models of regional glaciation history in this near-coastal area largely unconstrained. MAGIC-DML is an ongoing Swedish-US-Norwegian-German-UK collaboration with a focus on improving ice sheet models by combining advances in numerical modeling with filling critical data gaps that exist in our knowledge of the timing and pattern of ice surface changes on the western Dronning Maud Land margin. A combination of geomorphological mapping using remote sensing data, field investigations, cosmogenic nuclide surface exposure dating, and numerical ice-sheet modeling are being used in an iterative manner to produce a comprehensive reconstruction of the glacial history of western Dronning Maud Land. We will present an overview of the project, as well as field observations and preliminary in situ cosmogenic nuclide measurements from the 2016/17 expedition.

Inventory of File SN.2012091412.gribn3.f18.grib2

Science.gov Websites

Convective Precipitation [kg/m^2] 285 surface NCPCP 18 hour fcst Large-Scale Precipitation (non-convective ) [kg/m^2] 286 surface NCPCP 18 hour fcst Large-Scale Precipitation (non-convective) [kg/m^2] 287 surface NCPCP 18 hour fcst Large-Scale Precipitation (non-convective) [kg/m^2] 288 surface NCPCP 18 hour

LES with and without explicit filtering: comparison and assessment of various models

NASA Astrophysics Data System (ADS)

Winckelmans, Gregoire S.; Jeanmart, Herve; Wray, Alan A.; Carati, Daniele

2000-11-01

The proper mathematical formalism for large eddy simulation (LES) of turbulent flows assumes that a regular ``explicit" filter (i.e., a filter with a well-defined second moment, such as the gaussian, the top hat, etc.) is applied to the equations of fluid motion. This filter is then responsible for a ``filtered-scale" stress. Because of the discretization of the filtered equations, using the LES grid, there is also a ``subgrid-scale" stress. The global effective stress is found to be the discretization of a filtered-scale stress plus a subgrid-scale stress. The former can be partially reconstructed from an exact, infinite, series, the first term of which is the ``tensor-diffusivity" model of Leonard and is found, in practice, to be sufficient for modeling. Alternatively, sufficient reconstruction can also be achieved using the ``scale-similarity" model of Bardina. The latter corresponds to loss of information: it cannot be reconstructed; its effect (essentially dissipation) must be modeled using ad hoc modeling strategies (such as the dynamic version of the ``effective viscosity" model of Smagorinsky). Practitionners also often assume LES without explicit filtering: the effective stress is then only a subgrid-scale stress. We here compare the performance of various LES models for both approaches (with and without explicit filtering), and for cases without solid boundaries: (1) decay of isotropic turbulence; (2) decay of aircraft wake vortices in a turbulent atmosphere. One main conclusion is that better subgrid-scale models are still needed, the effective viscosity models being too active at the large scales.

Large-scale urban point cloud labeling and reconstruction

NASA Astrophysics Data System (ADS)

Zhang, Liqiang; Li, Zhuqiang; Li, Anjian; Liu, Fangyu

2018-04-01

The large number of object categories and many overlapping or closely neighboring objects in large-scale urban scenes pose great challenges in point cloud classification. In this paper, a novel framework is proposed for classification and reconstruction of airborne laser scanning point cloud data. To label point clouds, we present a rectified linear units neural network named ReLu-NN where the rectified linear units (ReLu) instead of the traditional sigmoid are taken as the activation function in order to speed up the convergence. Since the features of the point cloud are sparse, we reduce the number of neurons by the dropout to avoid over-fitting of the training process. The set of feature descriptors for each 3D point is encoded through self-taught learning, and forms a discriminative feature representation which is taken as the input of the ReLu-NN. The segmented building points are consolidated through an edge-aware point set resampling algorithm, and then they are reconstructed into 3D lightweight models using the 2.5D contouring method (Zhou and Neumann, 2010). Compared with deep learning approaches, the ReLu-NN introduced can easily classify unorganized point clouds without rasterizing the data, and it does not need a large number of training samples. Most of the parameters in the network are learned, and thus the intensive parameter tuning cost is significantly reduced. Experimental results on various datasets demonstrate that the proposed framework achieves better performance than other related algorithms in terms of classification accuracy and reconstruction quality.

A new statistical model for subgrid dispersion in large eddy simulations of particle-laden flows

NASA Astrophysics Data System (ADS)

Muela, Jordi; Lehmkuhl, Oriol; Pérez-Segarra, Carles David; Oliva, Asensi

2016-09-01

Dispersed multiphase turbulent flows are present in many industrial and commercial applications like internal combustion engines, turbofans, dispersion of contaminants, steam turbines, etc. Therefore, there is a clear interest in the development of models and numerical tools capable of performing detailed and reliable simulations about these kind of flows. Large Eddy Simulations offer good accuracy and reliable results together with reasonable computational requirements, making it a really interesting method to develop numerical tools for particle-laden turbulent flows. Nonetheless, in multiphase dispersed flows additional difficulties arises in LES, since the effect of the unresolved scales of the continuous phase over the dispersed phase is lost due to the filtering procedure. In order to solve this issue a model able to reconstruct the subgrid velocity seen by the particles is required. In this work a new model for the reconstruction of the subgrid scale effects over the dispersed phase is presented and assessed. This innovative methodology is based in the reconstruction of statistics via Probability Density Functions (PDFs).

3-dimensional electron microscopic imaging of the zebrafish olfactory bulb and dense reconstruction of neurons.

PubMed

Wanner, Adrian A; Genoud, Christel; Friedrich, Rainer W

2016-11-08

Large-scale reconstructions of neuronal populations are critical for structural analyses of neuronal cell types and circuits. Dense reconstructions of neurons from image data require ultrastructural resolution throughout large volumes, which can be achieved by automated volumetric electron microscopy (EM) techniques. We used serial block face scanning EM (SBEM) and conductive sample embedding to acquire an image stack from an olfactory bulb (OB) of a zebrafish larva at a voxel resolution of 9.25×9.25×25 nm 3 . Skeletons of 1,022 neurons, 98% of all neurons in the OB, were reconstructed by manual tracing and efficient error correction procedures. An ergonomic software package, PyKNOSSOS, was created in Python for data browsing, neuron tracing, synapse annotation, and visualization. The reconstructions allow for detailed analyses of morphology, projections and subcellular features of different neuron types. The high density of reconstructions enables geometrical and topological analyses of the OB circuitry. Image data can be accessed and viewed through the neurodata web services (http://www.neurodata.io). Raw data and reconstructions can be visualized in PyKNOSSOS.

3-dimensional electron microscopic imaging of the zebrafish olfactory bulb and dense reconstruction of neurons

PubMed Central

Wanner, Adrian A.; Genoud, Christel; Friedrich, Rainer W.

2016-01-01

Large-scale reconstructions of neuronal populations are critical for structural analyses of neuronal cell types and circuits. Dense reconstructions of neurons from image data require ultrastructural resolution throughout large volumes, which can be achieved by automated volumetric electron microscopy (EM) techniques. We used serial block face scanning EM (SBEM) and conductive sample embedding to acquire an image stack from an olfactory bulb (OB) of a zebrafish larva at a voxel resolution of 9.25×9.25×25 nm3. Skeletons of 1,022 neurons, 98% of all neurons in the OB, were reconstructed by manual tracing and efficient error correction procedures. An ergonomic software package, PyKNOSSOS, was created in Python for data browsing, neuron tracing, synapse annotation, and visualization. The reconstructions allow for detailed analyses of morphology, projections and subcellular features of different neuron types. The high density of reconstructions enables geometrical and topological analyses of the OB circuitry. Image data can be accessed and viewed through the neurodata web services (http://www.neurodata.io). Raw data and reconstructions can be visualized in PyKNOSSOS. PMID:27824337

Preserving half-metallic surface states in Cr O2 : Insights into surface reconstruction rules

NASA Astrophysics Data System (ADS)

Deng, Bei; Shi, X. Q.; Chen, L.; Tong, S. Y.

2018-04-01

The issue of whether the half-metallic (HM) nature of Cr O2 could be retained at its surface has been a standing problem under debate for a few decades, but until now is still controversial. Here, based on the density functional theory calculations we show, in startling contrast to the previous theoretical understandings, that the surfaces of Cr O2 favorably exhibit a half-metallic-semiconducting (SmC) transition driven by means of a surface electronic reconstruction largely attributed to the participation of the unexpected local charge carriers (LCCs), which convert the HM double exchange surface state into a SmC superexchange state and in turn, stabilize the surface as well. On the basis of the LCCs model, a new insight into the surface reconstruction rules is attained. Our novel finding not only provided an evident interpretation for the widely observed SmC character of Cr O2 surface, but also offered a novel means to improve the HM surface states for a variety of applications in spintronics and superconductors, and promote the experimental realization of the quantum anomalous Hall effect in half-metal based systems.

Three-dimensional joint inversion for magnetotelluric resistivity and static shift distributions in complex media

NASA Astrophysics Data System (ADS)

Sasaki, Yutaka; Meju, Max A.

2006-05-01

Accurate interpretation of magnetotelluric (MT) data in the presence of static shift arising from near-surface inhomogeneities is an unresolved problem in three-dimensional (3-D) inversion. While it is well known in 1-D and 2-D studies that static shift can lead to erroneous interpretation, how static shift can influence the result of 3-D inversion is not fully understood and is relevant to improved subsurface analysis. Using the synthetic data generated from 3-D models with randomly distributed heterogeneous overburden and elongate homogeneous overburden that are consistent with geological observations, this paper examines the effects of near-surface inhomogeneity on the accuracy of 3-D inversion models. It is found that small-scale and shallow depth structures are severely distorted while the large-scale structure is marginally distorted in 3-D inversion not accounting for static shift; thus the erroneous near-surface structure does degrade the reconstruction of smaller-scale structure at any depth. However, 3-D joint inversion for resistivity and static shift significantly reduces the artifacts caused by static shifts and improves the overall resolution, irrespective of whether a zero-sum or Gaussian distribution of static shifts is assumed. The 3-D joint inversion approach works equally well for situations where the shallow bodies are of small size or long enough to allow some induction such that the effects of near-surface inhomogeneity are manifested as a frequency-dependent shift rather than a constant shift.

Independence of surface morphology and reconstruction during the thermal preparation of perovskite oxide surfaces

NASA Astrophysics Data System (ADS)

Jäger, Maren; Teker, Ali; Mannhart, Jochen; Braun, Wolfgang

2018-03-01

Using a CO2 laser to directly heat the crystals from the back side, SrTiO3 substrates may be thermally prepared in situ for epitaxy without the need for ex-situ etching and annealing. We find that the formation of large terraces with straight steps at 900-1100 °C is independent of the formation of the ideal surface reconstruction for epitaxy, which requires temperatures in excess of 1200 °C to complete. The process may be universal, at least for perovskite oxide surfaces, as it also works, at different temperatures, for LaAlO3 and NdGaO3, two other widely used oxide substrate materials.

Climate effects on fire regimes and tree recruitment in Black Hills ponderosa pine forests.

PubMed

Brown, Peter M

2006-10-01

Climate influences forest structure through effects on both species demography (recruitment and mortality) and disturbance regimes. Here, I compare multi-century chronologies of regional fire years and tree recruitment from ponderosa pine forests in the Black Hills of southwestern South Dakota and northeastern Wyoming to reconstructions of precipitation and global circulation indices. Regional fire years were affected by droughts and variations in both Pacific and Atlantic sea surface temperatures. Fires were synchronous with La Niñas, cool phases of the Pacific Decadal Oscillation (PDO), and warm phases of the Atlantic Multidecadal Oscillation (AMO). These quasi-periodic circulation features are associated with drought conditions over much of the western United States. The opposite pattern (El Niño, warm PDO, cool AMO) was associated with fewer fires than expected. Regional tree recruitment largely occurred during wet periods in precipitation reconstructions, with the most abundant recruitment coeval with an extended pluvial from the late 1700s to early 1800s. Widespread even-aged cohorts likely were not the result of large crown fires causing overstory mortality, but rather were caused by optimal climate conditions that contributed to synchronous regional recruitment and longer intervals between surface fires. Synchronous recruitment driven by climate is an example of the Moran effect. The presence of abundant fire-scarred trees in multi-aged stands supports a prevailing historical model for ponderosa pine forests in which recurrent surface fires affected heterogenous forest structure, although the Black Hills apparently had a greater range of fire behavior and resulting forest structure over multi-decadal time scales than ponderosa pine forests of the Southwest that burned more often.

Track reconstruction at LHC as a collaborative data challenge use case with RAMP

NASA Astrophysics Data System (ADS)

Amrouche, Sabrina; Braun, Nils; Calafiura, Paolo; Farrell, Steven; Gemmler, Jochen; Germain, Cécile; Gligorov, Vladimir Vava; Golling, Tobias; Gray, Heather; Guyon, Isabelle; Hushchyn, Mikhail; Innocente, Vincenzo; Kégl, Balázs; Neuhaus, Sara; Rousseau, David; Salzburger, Andreas; Ustyuzhanin, Andrei; Vlimant, Jean-Roch; Wessel, Christian; Yilmaz, Yetkin

2017-08-01

Charged particle track reconstruction is a major component of data-processing in high-energy physics experiments such as those at the Large Hadron Collider (LHC), and is foreseen to become more and more challenging with higher collision rates. A simplified two-dimensional version of the track reconstruction problem is set up on a collaborative platform, RAMP, in order for the developers to prototype and test new ideas. A small-scale competition was held during the Connecting The Dots / Intelligent Trackers 2017 (CTDWIT 2017) workshop. Despite the short time scale, a number of different approaches have been developed and compared along a single score metric, which was kept generic enough to accommodate a summarized performance in terms of both efficiency and fake rates.

Handling Big Data in Medical Imaging: Iterative Reconstruction with Large-Scale Automated Parallel Computation

PubMed Central

Lee, Jae H.; Yao, Yushu; Shrestha, Uttam; Gullberg, Grant T.; Seo, Youngho

2014-01-01

The primary goal of this project is to implement the iterative statistical image reconstruction algorithm, in this case maximum likelihood expectation maximum (MLEM) used for dynamic cardiac single photon emission computed tomography, on Spark/GraphX. This involves porting the algorithm to run on large-scale parallel computing systems. Spark is an easy-to- program software platform that can handle large amounts of data in parallel. GraphX is a graph analytic system running on top of Spark to handle graph and sparse linear algebra operations in parallel. The main advantage of implementing MLEM algorithm in Spark/GraphX is that it allows users to parallelize such computation without any expertise in parallel computing or prior knowledge in computer science. In this paper we demonstrate a successful implementation of MLEM in Spark/GraphX and present the performance gains with the goal to eventually make it useable in clinical setting. PMID:27081299

Handling Big Data in Medical Imaging: Iterative Reconstruction with Large-Scale Automated Parallel Computation.

PubMed

Lee, Jae H; Yao, Yushu; Shrestha, Uttam; Gullberg, Grant T; Seo, Youngho

2014-11-01

The primary goal of this project is to implement the iterative statistical image reconstruction algorithm, in this case maximum likelihood expectation maximum (MLEM) used for dynamic cardiac single photon emission computed tomography, on Spark/GraphX. This involves porting the algorithm to run on large-scale parallel computing systems. Spark is an easy-to- program software platform that can handle large amounts of data in parallel. GraphX is a graph analytic system running on top of Spark to handle graph and sparse linear algebra operations in parallel. The main advantage of implementing MLEM algorithm in Spark/GraphX is that it allows users to parallelize such computation without any expertise in parallel computing or prior knowledge in computer science. In this paper we demonstrate a successful implementation of MLEM in Spark/GraphX and present the performance gains with the goal to eventually make it useable in clinical setting.

An eigenfunction method for reconstruction of large-scale and high-contrast objects.

PubMed

Waag, Robert C; Lin, Feng; Varslot, Trond K; Astheimer, Jeffrey P

2007-07-01

A multiple-frequency inverse scattering method that uses eigenfunctions of a scattering operator is extended to image large-scale and high-contrast objects. The extension uses an estimate of the scattering object to form the difference between the scattering by the object and the scattering by the estimate of the object. The scattering potential defined by this difference is expanded in a basis of products of acoustic fields. These fields are defined by eigenfunctions of the scattering operator associated with the estimate. In the case of scattering objects for which the estimate is radial, symmetries in the expressions used to reconstruct the scattering potential greatly reduce the amount of computation. The range of parameters over which the reconstruction method works well is illustrated using calculated scattering by different objects. The method is applied to experimental data from a 48-mm diameter scattering object with tissue-like properties. The image reconstructed from measurements has, relative to a conventional B-scan formed using a low f-number at the same center frequency, significantly higher resolution and less speckle, implying that small, high-contrast structures can be demonstrated clearly using the extended method.

Red, Straight, no bends: primordial power spectrum reconstruction from CMB and large-scale structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ravenni, Andrea; Verde, Licia; Cuesta, Antonio J., E-mail: andrea.ravenni@pd.infn.it, E-mail: liciaverde@icc.ub.edu, E-mail: ajcuesta@icc.ub.edu

2016-08-01

We present a minimally parametric, model independent reconstruction of the shape of the primordial power spectrum. Our smoothing spline technique is well-suited to search for smooth features such as deviations from scale invariance, and deviations from a power law such as running of the spectral index or small-scale power suppression. We use a comprehensive set of the state-of the art cosmological data: Planck observations of the temperature and polarisation anisotropies of the cosmic microwave background, WiggleZ and Sloan Digital Sky Survey Data Release 7 galaxy power spectra and the Canada-France-Hawaii Lensing Survey correlation function. This reconstruction strongly supports the evidencemore » for a power law primordial power spectrum with a red tilt and disfavours deviations from a power law power spectrum including small-scale power suppression such as that induced by significantly massive neutrinos. This offers a powerful confirmation of the inflationary paradigm, justifying the adoption of the inflationary prior in cosmological analyses.« less

Red, Straight, no bends: primordial power spectrum reconstruction from CMB and large-scale structure

NASA Astrophysics Data System (ADS)

Ravenni, Andrea; Verde, Licia; Cuesta, Antonio J.

2016-08-01

We present a minimally parametric, model independent reconstruction of the shape of the primordial power spectrum. Our smoothing spline technique is well-suited to search for smooth features such as deviations from scale invariance, and deviations from a power law such as running of the spectral index or small-scale power suppression. We use a comprehensive set of the state-of the art cosmological data: Planck observations of the temperature and polarisation anisotropies of the cosmic microwave background, WiggleZ and Sloan Digital Sky Survey Data Release 7 galaxy power spectra and the Canada-France-Hawaii Lensing Survey correlation function. This reconstruction strongly supports the evidence for a power law primordial power spectrum with a red tilt and disfavours deviations from a power law power spectrum including small-scale power suppression such as that induced by significantly massive neutrinos. This offers a powerful confirmation of the inflationary paradigm, justifying the adoption of the inflationary prior in cosmological analyses.

Muon reconstruction performance of the ATLAS detector in proton–proton collision data at √s=13 TeV

DOE PAGES

Aad, G.; Abbott, B.; Abdallah, J.; ...

2016-05-23

This article documents the performance of the ATLAS muon identification and reconstruction using the LHC dataset recorded at √s=13 TeV in 2015. Using a large sample of J/ψ → μμ and Z → μμ decays from 3.2 fb -1 of pp collision data, measurements of the reconstruction efficiency, as well as of the momentum scale and resolution, are presented and compared to Monte Carlo simulations. Furthermore, the reconstruction efficiency is measured to be close to 99% over most of the covered phase space (|η| < 2.5 and 52.2 , the p T resolution for muons from Z → μμ decaysmore » is 2.9% while the precision of the momentum scale for low-p T muons from J/ψ → μμ decays is about 0.2% .« less

Probing Seismically Melting Induced Mantle Heterogeneities in Thermal-chemical Convection Models

NASA Astrophysics Data System (ADS)

Heck, H. V.; Davies, H.; Nowacki, A.; Wookey, J. M.

2015-12-01

Two regions at the base of the Earth's mantle (the Large Low-Shear Velocity Provinces) pose a fundamental problem in understanding large-scale mantle dynamics and history. Are they dense piles of (possibly primordial) material separated from mantle circulation, or large-scale thermal features which are part of global mantle convection? Or some combination of the two? We use our numerical 3D spherical mantle convection code to perform simulations of the Earths mantle dynamical evolution. We drive the surface velocity of the model according to 200 Ma plate motion reconstructions, to arrive at Earth-like structures in the mantle at present day. Variations in bulk chemistry will be tracked in two ways: 1) by starting the calculations with a (primordial) dense layer at the base of the mantle, and 2) by tracking basalt fraction which is fractionated upon melting close to the surface. The resulting distribution of chemical heterogeneity and temperature will be converted to seismic velocities. This will be done with a thermodynamical database (Stixrude & Lithgow-Bertelloni, GJI, 2005, 2011), allowing us to compare the model with previous observations of triplications and waveform complexity near the margins of the LLSVPs. These observations have been taken as proof that strong chemical variations are present; our simulations can be used to show whether this is true, or if purely thermal convection can also cause these features. We simulate finite-frequency, 3D seismograms at ~5 s period and compare these with previous studies.

From bed topography to ice thickness: GlaRe, a GIS tool to reconstruct the surface of palaeoglaciers

NASA Astrophysics Data System (ADS)

Pellitero, Ramon; Rea, Brice; Spagnolo, Matteo; Bakke, Jostein; Ivy-Ochs, Susan; Frew, Craig; Hughes, Philip; Ribolini, Adriano; Renssen, Hans; Lukas, Sven

2016-04-01

We present GlaRe, A GIS tool that automatically reconstructs the 3D geometry for palaeoglaciers given the bed topography. This tool utilises a numerical approach and can work using a minimum of morphological evidence i.e. the position of the palaeoglacier front. The numerical approach is based on an iterative solution to the perfect plasticity assumption for ice rheology, explained in Benn and Hulton (2010). The tool can be run in ArcGIS 10.1 (ArcInfo license) and later updates and the toolset is written in Python code. The GlaRe toolbox presented in this paper implements a well-established approach for the determination of palaeoglacier equilibrium profiles. Significantly it permits users to quickly run multiple glacier reconstructions which were previously very laborious and time consuming (typically days for a single valley glacier). The implementation of GlaRe will facilitate the reconstruction of large numbers of palaeoglaciers which will provide opportunities for such research addressing at least two fundamental problems: 1. Investigation of the dynamics of palaeoglaciers. Glacier reconstructions are often based on a rigorous interpretation of glacial landforms but not always sufficient attention and/or time has been given to the actual reconstruction of the glacier surface, which is crucial for the calculation of palaeoglacier ELAs and subsequent derivation of quantitative palaeoclimatic data. 2. the ability to run large numbers of reconstructions and over much larger spatial areas provides an opportunity to undertake palaeoglaciers reconstructions across entire mountain, ranges, regions or even continents, allowing climatic gradients and atmospheric circulation patterns to be elucidated. The tool performance has been evaluated by comparing two extant glaciers, an icefield and a cirque/valley glacier from which the subglacial topography is known with a basic reconstruction using GlaRe. Results from the comparisons between extant glacier surfaces and modelled ones show very similar ELA values on the order of 10-20 meter error (which would account for a 0.065-0.13 K degree variation on a typical -6.5 K altitudinal gradient), and these can be improved further by increasing the number of flowlines and using F factors where needed. GlaRe is able to quickly generate robust palaeoglacier surfaces based on the very limited inputs often available from the geomorphological record.

Method for large-scale fabrication of atomic-scale structures on material surfaces using surface vacancies

DOEpatents

Lim, Chong Wee; Ohmori, Kenji; Petrov, Ivan Georgiev; Greene, Joseph E.

2004-07-13

A method for forming atomic-scale structures on a surface of a substrate on a large-scale includes creating a predetermined amount of surface vacancies on the surface of the substrate by removing an amount of atoms on the surface of the material corresponding to the predetermined amount of the surface vacancies. Once the surface vacancies have been created, atoms of a desired structure material are deposited on the surface of the substrate to enable the surface vacancies and the atoms of the structure material to interact. The interaction causes the atoms of the structure material to form the atomic-scale structures.

Pollen-based continental climate reconstructions at 6 and 21 ka: a global synthesis

USGS Publications Warehouse

Bartlein, P.J.; Harrison, S.P.; Brewer, Sandra; Connor, S.; Davis, B.A.S.; Gajewski, K.; Guiot, J.; Harrison-Prentice, T. I.; Henderson, A.; Peyron, O.; Prentice, I.C.; Scholze, M.; Seppa, H.; Shuman, B.; Sugita, S.; Thompson, R.S.; Viau, A.E.; Williams, J.; Wu, H.

2010-01-01

Subfossil pollen and plant macrofossil data derived from 14C-dated sediment profiles can provide quantitative information on glacial and interglacial climates. The data allow climate variables related to growing-season warmth, winter cold, and plant-available moisture to be reconstructed. Continental-scale reconstructions have been made for the mid-Holocene (MH, around 6 ka) and Last Glacial Maximum (LGM, around 21 ka), allowing comparison with palaeoclimate simulations currently being carried out as part of the fifth Assessment Report (AR5) of the Intergovernmental Panel on Climate Change. The synthesis of the available MH and LGM climate reconstructions and their uncertainties, obtained using modern-analogue, regression and model-inversion techniques, is presented for four temperature variables and two moisture variables. Reconstructions of the same variables based on surface-pollen assemblages are shown to be accurate and unbiased. Reconstructed LGM and MH climate anomaly patterns are coherent, consistent between variables, and robust with respect to the choice of technique. They support a conceptual model of the controls of Late Quaternary climate change whereby the first-order effects of orbital variations and greenhouse forcing on the seasonal cycle of temperature are predictably modified by responses of the atmospheric circulation and surface energy balance.

Using unmanned aerial vehicles and structure-from-motion photogrammetry to characterize sedimentary outcrops: An example from the Morrison Formation, Utah, USA

NASA Astrophysics Data System (ADS)

Chesley, J. T.; Leier, A. L.; White, S.; Torres, R.

2017-06-01

Recently developed data collection techniques allow for improved characterization of sedimentary outcrops. Here, we outline a workflow that utilizes unmanned aerial vehicles (UAV) and structure-from-motion (SfM) photogrammetry to produce sub-meter-scale outcrop reconstructions in 3-D. SfM photogrammetry uses multiple overlapping images and an image-based terrain extraction algorithm to reconstruct the location of individual points from the photographs in 3-D space. The results of this technique can be used to construct point clouds, orthomosaics, and digital surface models that can be imported into GIS and related software for further study. The accuracy of the reconstructed outcrops, with respect to an absolute framework, is improved with geotagged images or independently gathered ground control points, and the internal accuracy of 3-D reconstructions is sufficient for sub-meter scale measurements. We demonstrate this approach with a case study from central Utah, USA, where UAV-SfM data can help delineate complex features within Jurassic fluvial sandstones.

Virtual rough samples to test 3D nanometer-scale scanning electron microscopy stereo photogrammetry.

PubMed

Villarrubia, J S; Tondare, V N; Vladár, A E

2016-01-01

The combination of scanning electron microscopy for high spatial resolution, images from multiple angles to provide 3D information, and commercially available stereo photogrammetry software for 3D reconstruction offers promise for nanometer-scale dimensional metrology in 3D. A method is described to test 3D photogrammetry software by the use of virtual samples-mathematical samples from which simulated images are made for use as inputs to the software under test. The virtual sample is constructed by wrapping a rough skin with any desired power spectral density around a smooth near-trapezoidal line with rounded top corners. Reconstruction is performed with images simulated from different angular viewpoints. The software's reconstructed 3D model is then compared to the known geometry of the virtual sample. Three commercial photogrammetry software packages were tested. Two of them produced results for line height and width that were within close to 1 nm of the correct values. All of the packages exhibited some difficulty in reconstructing details of the surface roughness.

Long-term magnetic field stability of Vega

NASA Astrophysics Data System (ADS)

Alina, D.; Petit, P.; Lignières, F.; Wade, G. A.; Fares, R.; Aurière, M.; Böhm, T.; Carfantan, H.

2012-05-01

We present new spectropolarimetric observations of the normal A-type star Vega, obtained during the summer of 2010 with NARVAL at Télescope Bernard Lyot (Pic du Midi Observatory). This new time-series is constituted of 615 spectra collected over 6 different nights. We use the Least-Square-Deconvolution technique to compute, from each spectrum, a mean line profile with a signal-to-noise ratio close to 20,000. After averaging all 615 polarized observations, we detect a circularly polarized Zeeman signature consistent in shape and amplitude with the signatures previously reported from our observations of 2008 and 2009. The surface magnetic geometry of the star, reconstructed using the technique of Zeeman-Doppler Imaging, agrees with the maps obtained in 2008 and 2009, showing that most recognizable features of the photospheric field of Vega are only weakly distorted by large-scale surface flows (differential rotation or meridional circulation).

Bedrock Erosion Surfaces Record Former East Antarctic Ice Sheet Extent

NASA Astrophysics Data System (ADS)

Paxman, Guy J. G.; Jamieson, Stewart S. R.; Ferraccioli, Fausto; Bentley, Michael J.; Ross, Neil; Armadillo, Egidio; Gasson, Edward G. W.; Leitchenkov, German; DeConto, Robert M.

2018-05-01

East Antarctica hosts large subglacial basins into which the East Antarctic Ice Sheet (EAIS) likely retreated during past warmer climates. However, the extent of retreat remains poorly constrained, making quantifying past and predicted future contributions to global sea level rise from these marine basins challenging. Geomorphological analysis and flexural modeling within the Wilkes Subglacial Basin are used to reconstruct the ice margin during warm intervals of the Oligocene-Miocene. Flat-lying bedrock plateaus are indicative of an ice sheet margin positioned >400-500 km inland of the modern grounding zone for extended periods of the Oligocene-Miocene, equivalent to a 2-m rise in global sea level. Our findings imply that if major EAIS retreat occurs in the future, isostatic rebound will enable the plateau surfaces to act as seeding points for extensive ice rises, thus limiting extensive ice margin retreat of the scale seen during the early EAIS.

ESO/ST-ECF Data Analysis Workshop, 5th, Garching, Germany, Apr. 26, 27, 1993, Proceedings

NASA Astrophysics Data System (ADS)

Grosbol, Preben; de Ruijsscher, Resy

1993-01-01

Various papers on astronomical data analysis are presented. Individual optics addressed include: surface photometry of early-type galaxies, wavelet transform and adaptive filtering, package for surface photometry of galaxies, calibration of large-field mosaics, surface photometry of galaxies with HST, wavefront-supported image deconvolution, seeing effects on elliptical galaxies, multiple algorithms deconvolution program, enhancement of Skylab X-ray images, MIDAS procedures for the image analysis of E-S0 galaxies, photometric data reductions under MIDAS, crowded field photometry with deconvolved images, the DENIS Deep Near Infrared Survey. Also discussed are: analysis of astronomical time series, detection of low-amplitude stellar pulsations, new SOT method for frequency analysis, chaotic attractor reconstruction and applications to variable stars, reconstructing a 1D signal from irregular samples, automatic analysis for time series with large gaps, prospects for content-based image retrieval, redshift survey in the South Galactic Pole Region.

3D shape reconstruction of specular surfaces by using phase measuring deflectometry

NASA Astrophysics Data System (ADS)

Zhou, Tian; Chen, Kun; Wei, Haoyun; Li, Yan

2016-10-01

The existing estimation methods for recovering height information from surface gradient are mainly divided into Modal and Zonal techniques. Since specular surfaces used in the industry always have complex and large areas, considerations must be given to both the improvement of measurement accuracy and the acceleration of on-line processing speed, which beyond the capacity of existing estimations. Incorporating the Modal and Zonal approaches into a unifying scheme, we introduce an improved 3D shape reconstruction version of specular surfaces based on Phase Measuring Deflectometry in this paper. The Modal estimation is firstly implemented to derive the coarse height information of the measured surface as initial iteration values. Then the real shape can be recovered utilizing a modified Zonal wave-front reconstruction algorithm. By combining the advantages of Modal and Zonal estimations, the proposed method simultaneously achieves consistently high accuracy and dramatically rapid convergence. Moreover, the iterative process based on an advanced successive overrelaxation technique shows a consistent rejection of measurement errors, guaranteeing the stability and robustness in practical applications. Both simulation and experimentally measurement demonstrate the validity and efficiency of the proposed improved method. According to the experimental result, the computation time decreases approximately 74.92% in contrast to the Zonal estimation and the surface error is about 6.68 μm with reconstruction points of 391×529 pixels of an experimentally measured sphere mirror. In general, this method can be conducted with fast convergence speed and high accuracy, providing an efficient, stable and real-time approach for the shape reconstruction of specular surfaces in practical situations.

Neutron Tomography at the Los Alamos Neutron Science Center

DOE Office of Scientific and Technical Information (OSTI.GOV)

Myers, William Riley

Neutron imaging is an incredibly powerful tool for non-destructive sample characterization and materials science. Neutron tomography is one technique that results in a three-dimensional model of the sample, representing the interaction of the neutrons with the sample. This relies both on reliable data acquisition and on image processing after acquisition. Over the course of the project, the focus has changed from the former to the latter, culminating in a large-scale reconstruction of a meter-long fossilized skull. The full reconstruction is not yet complete, though tools have been developed to improve the speed and accuracy of the reconstruction. This project helpsmore » to improve the capabilities of LANSCE and LANL with regards to imaging large or unwieldy objects.« less

Backscattering from a Gaussian distributed, perfectly conducting, rough surface

NASA Technical Reports Server (NTRS)

Brown, G. S.

1977-01-01

The problem of scattering by random surfaces possessing many scales of roughness is analyzed. The approach is applicable to bistatic scattering from dielectric surfaces, however, this specific analysis is restricted to backscattering from a perfectly conducting surface in order to more clearly illustrate the method. The surface is assumed to be Gaussian distributed so that the surface height can be split into large and small scale components, relative to the electromagnetic wavelength. A first order perturbation approach is employed wherein the scattering solution for the large scale structure is perturbed by the small scale diffraction effects. The scattering from the large scale structure is treated via geometrical optics techniques. The effect of the large scale surface structure is shown to be equivalent to a convolution in k-space of the height spectrum with the following: the shadowing function, a polarization and surface slope dependent function, and a Gaussian factor resulting from the unperturbed geometrical optics solution. This solution provides a continuous transition between the near normal incidence geometrical optics and wide angle Bragg scattering results.

Unfolding the arc: The use of pre-orogenic constraints to assess the evolution of the Variscan belt in Western Europe

NASA Astrophysics Data System (ADS)

Casas, Josep M.; Brendan Murphy, J.

2018-06-01

We present a pre-orogenic, early Paleozoic, palinspastic reconstruction of the northern Gondwana margin that was subsequently involved in the Late Paleozoic Variscan orogeny in central and Western Europe. Our reconstruction is based on two pre-orogenic data sets, the age and distribution of Cambrian-Ordovician magmatism and the detrital zircon age signature of late Neoproterozoic-early Paleozoic clastic rocks. We obtain this reconstruction by unfolding the Ibero-Armorican arc and by restoring the movement of the large-scale dextral strike-slip faults that transect the different tectono-stratigraphic units. Our results favour an irregular shape for this part of the northern Gondwana margin with a N-S central segment linking two E-W oriented segments. The proposed reconstruction and the structural restoration of the main features of Variscan deformation is in accordance with some aspects of previously proposed structural models, such as the curved geometry of the Gondwanan margin required by the indentor model for continental collision, the role played by the large strike-slip faults in dispersing formerly juxtaposed units, and the regional-scale oroclinal folding of part of this margin during late Carboniferous-Early Permian times. The combined use of the pre-orogenic geological constraints and palinspastic restoration is a useful approach that may provide a foundation for continual refinement of reconstructions as more data become available.

Planning of skull reconstruction based on a statistical shape model combined with geometric morphometrics.

PubMed

Fuessinger, Marc Anton; Schwarz, Steffen; Cornelius, Carl-Peter; Metzger, Marc Christian; Ellis, Edward; Probst, Florian; Semper-Hogg, Wiebke; Gass, Mathieu; Schlager, Stefan

2018-04-01

Virtual reconstruction of large cranial defects is still a challenging task. The current reconstruction procedures depend on the surgeon's experience and skills in planning the reconstruction based on mirroring and manual adaptation. The aim of this study is to propose and evaluate a computer-based approach employing a statistical shape model (SSM) of the cranial vault. An SSM was created based on 131 CT scans of pathologically unaffected adult crania. After segmentation, the resulting surface mesh of one patient was established as template and subsequently registered to the entire sample. Using the registered surface meshes, an SSM was generated capturing the shape variability of the cranial vault. The knowledge about this shape variation in healthy patients was used to estimate the missing parts. The accuracy of the reconstruction was evaluated by using 31 CT scans not included in the SSM. Both unilateral and bilateral bony defects were created on each skull. The reconstruction was performed using the current gold standard of mirroring the intact to the affected side, and the result was compared to the outcome of our proposed SSM-driven method. The accuracy of the reconstruction was determined by calculating the distances to the corresponding parts on the intact skull. While unilateral defects could be reconstructed with both methods, the reconstruction of bilateral defects was, for obvious reasons, only possible employing the SSM-based method. Comparing all groups, the analysis shows a significantly higher precision of the SSM group, with a mean error of 0.47 mm compared to the mirroring group which exhibited a mean error of 1.13 mm. Reconstructions of bilateral defects yielded only slightly higher estimation errors than those of unilateral defects. The presented computer-based approach using SSM is a precise and simple tool in the field of computer-assisted surgery. It helps to reconstruct large-size defects of the skull considering the natural asymmetry of the cranium and is not limited to unilateral defects.

Baryon Acoustic Oscillations reconstruction with pixels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Obuljen, Andrej; Villaescusa-Navarro, Francisco; Castorina, Emanuele

2017-09-01

Gravitational non-linear evolution induces a shift in the position of the baryon acoustic oscillations (BAO) peak together with a damping and broadening of its shape that bias and degrades the accuracy with which the position of the peak can be determined. BAO reconstruction is a technique developed to undo part of the effect of non-linearities. We present and analyse a reconstruction method that consists of displacing pixels instead of galaxies and whose implementation is easier than the standard reconstruction method. We show that this method is equivalent to the standard reconstruction technique in the limit where the number of pixelsmore » becomes very large. This method is particularly useful in surveys where individual galaxies are not resolved, as in 21cm intensity mapping observations. We validate this method by reconstructing mock pixelated maps, that we build from the distribution of matter and halos in real- and redshift-space, from a large set of numerical simulations. We find that this method is able to decrease the uncertainty in the BAO peak position by 30-50% over the typical angular resolution scales of 21 cm intensity mapping experiments.« less

Millennial-scale variability in the local radiocarbon reservoir age of the Florida Keys reef tract during the Holocene

NASA Astrophysics Data System (ADS)

Ashe, E.; Toth, L. T.; Cheng, H.; Edwards, R. L.; Richey, J. N.

2016-12-01

The oceanic passage between the Florida Keys and Cuba, known as the Straits of Florida, provides a critical connection between the tropics and northern Atlantic. Changes in the character of water masses transported through this region may ultimately have important impacts on high-latitude climate variability. Although recent studies have documented significant changes in the density of regional surface waters over millennial timescales, little is known about the contribution of local- to regional-scale changes in circulation to surface-water variability. Local variability in the radiocarbon age, ΔR, of surface waters can be used to trace changes in local water-column mixing and/or changes in regional source water over a variety of spatial and temporal scales. We reconstructed "snapshots" of ΔR variability across the Florida Keys reef tract during the last 10,000 years by dating 68 unaltered corals collected from Holocene reef cores with both U-series and radiocarbon techniques. We combined the snapshots of ΔR into a semi-empirical model to develop a robust statistical reconstruction of millennial-scale variability in ΔR on the Florida Keys reef tract. Our model demonstrates that ΔR varied significantly during the Holocene, with relatively high values during the early Holocene and around 3000 years BP and relatively low values around 7000 years BP and at present. We compare the trends in ΔR to existing paleoceanographic reconstructions to evaluate the relative contribution of local upwelling versus changes in source water to the region as a whole in driving local radiocarbon variability, and discuss the importance of these results to our understanding of regional-scale oceanographic and climatic variability during the Holocene. We also discuss the implications of our results for radiocarbon dating of marine samples from south Florida and present a model of ΔR versus 14C age that can be used to improve the accuracy of radiocarbon calibrations from this region.

An ensemble approach to reconstructing 20th century climate trends in data-sparse regions of the tropical Pacific using young fossil corals

NASA Astrophysics Data System (ADS)

Hitt, N. T.; Cobb, K. M.; Sayani, H. R.; Grothe, P. R.; Atwood, A. R.; O'Connor, G.; Chen, T.; Hagos, M. M.; Deocampo, D.; Edwards, R. L.; Cheng, H.; Lu, Y.; Thompson, D. M.

2016-12-01

Sea-surface temperature (SST) variability in the central tropical Pacific drives global-scale responses through atmospheric teleconnections, so the response of this region to anthropogenic forcing has important implications for regional climate responses in many areas. However, quantification of anthropogenic SST trends in the central tropical Pacific is complicated by the fact that instrumental SST observations in this region are extremely limited prior to 1950, with trends of opposite sign observed across the various gridded instrumental datasets (Deser et al., 2010). Researchers have turned to multi-century coral records to reconstruct ocean temperatures through time, but the paucity of such records prohibits the generation of uncertainty estimates. In this study, we use a large collection of U/Th-dated fossil corals that to investigate a new ensemble approach to reconstructing temperature from the Central Pacific over the late 20th century. Here we combine monthly-resolved d18O and Sr/Ca from 8 5-14 year long coral records from Christmas Island (2°N, 157°W) to quantify temperature and hydrological trends in this region from 1930 to present. We compare our fossil coral ensemble reconstruction to a long modern coral core from this site that extends back to 1940, as well as to gridded SST datasets. We also provide the first well-replicated coral d18O and Sr/Ca records across both the 1997/98 and 2015/2016 El Nino events, comparing the strength of these two events in the context of long-term temperature trends observed in our longer reconstruction. We conclude that the fossil coral ensemble approach provides a robust means of reconstructing 20th century climate trends. Deser et al., 2010, GRL, doi: 10.1029/2010GL043321

Beyond Linear Sequence Comparisons: The use of genome-levelcharacters for phylogenetic reconstruction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boore, Jeffrey L.

2004-11-27

Although the phylogenetic relationships of many organisms have been convincingly resolved by the comparisons of nucleotide or amino acid sequences, others have remained equivocal despite great effort. Now that large-scale genome sequencing projects are sampling many lineages, it is becoming feasible to compare large data sets of genome-level features and to develop this as a tool for phylogenetic reconstruction that has advantages over conventional sequence comparisons. Although it is unlikely that these will address a large number of evolutionary branch points across the broad tree of life due to the infeasibility of such sampling, they have great potential for convincinglymore » resolving many critical, contested relationships for which no other data seems promising. However, it is important that we recognize potential pitfalls, establish reasonable standards for acceptance, and employ rigorous methodology to guard against a return to earlier days of scenario-driven evolutionary reconstructions.« less

Recovering the full velocity and density fields from large-scale redshift-distance samples

NASA Technical Reports Server (NTRS)

Bertschinger, Edmund; Dekel, Avishai

1989-01-01

A new method for extracting the large-scale three-dimensional velocity and mass density fields from measurements of the radial peculiar velocities is presented. Galaxies are assumed to trace the velocity field rather than the mass. The key assumption made is that the Lagrangian velocity field has negligible vorticity, as might be expected from perturbations that grew by gravitational instability. By applying the method to cosmological N-body simulations, it is demonstrated that it accurately reconstructs the velocity field. This technique promises a direct determination of the mass density field and the initial conditions for the formation of large-scale structure from galaxy peculiar velocity surveys.

Anisotropic conductivity imaging with MREIT using equipotential projection algorithm.

PubMed

Değirmenci, Evren; Eyüboğlu, B Murat

2007-12-21

Magnetic resonance electrical impedance tomography (MREIT) combines magnetic flux or current density measurements obtained by magnetic resonance imaging (MRI) and surface potential measurements to reconstruct images of true conductivity with high spatial resolution. Most of the biological tissues have anisotropic conductivity; therefore, anisotropy should be taken into account in conductivity image reconstruction. Almost all of the MREIT reconstruction algorithms proposed to date assume isotropic conductivity distribution. In this study, a novel MREIT image reconstruction algorithm is proposed to image anisotropic conductivity. Relative anisotropic conductivity values are reconstructed iteratively, using only current density measurements without any potential measurement. In order to obtain true conductivity values, only either one potential or conductivity measurement is sufficient to determine a scaling factor. The proposed technique is evaluated on simulated data for isotropic and anisotropic conductivity distributions, with and without measurement noise. Simulation results show that the images of both anisotropic and isotropic conductivity distributions can be reconstructed successfully.

SU-E-T-362: Automatic Catheter Reconstruction of Flap Applicators in HDR Surface Brachytherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buzurovic, I; Devlin, P; Hansen, J

2014-06-01

Purpose: Catheter reconstruction is crucial for the accurate delivery of radiation dose in HDR brachytherapy. The process becomes complicated and time-consuming for large superficial clinical targets with a complex topology. A novel method for the automatic catheter reconstruction of flap applicators is proposed in this study. Methods: We have developed a program package capable of image manipulation, using C++class libraries of The-Visualization-Toolkit(VTK) software system. The workflow for automatic catheter reconstruction is: a)an anchor point is placed in 3D or in the axial view of the first slice at the tip of the first, last and middle points for the curvedmore » surface; b)similar points are placed on the last slice of the image set; c)the surface detection algorithm automatically registers the points to the images and applies the surface reconstruction filter; d)then a structured grid surface is generated through the center of the treatment catheters placed at a distance of 5mm from the patient's skin. As a result, a mesh-style plane is generated with the reconstructed catheters placed 10mm apart. To demonstrate automatic catheter reconstruction, we used CT images of patients diagnosed with cutaneous T-cell-lymphoma and imaged with Freiburg-Flap-Applicators (Nucletron™-Elekta, Netherlands). The coordinates for each catheter were generated and compared to the control points selected during the manual reconstruction for 16catheters and 368control point Results: The variation of the catheter tip positions between the automatically and manually reconstructed catheters was 0.17mm(SD=0.23mm). The position difference between the manually selected catheter control points and the corresponding points obtained automatically was 0.17mm in the x-direction (SD=0.23mm), 0.13mm in the y-direction (SD=0.22mm), and 0.14mm in the z-direction (SD=0.24mm). Conclusion: This study shows the feasibility of the automatic catheter reconstruction of flap applicators with a high level of positioning accuracy. Implementation of this technique has potential to decrease the planning time and may improve overall quality in superficial brachytherapy.« less

Dynamics of Active Layer Depth across Alaskan Tundra Ecosystems

NASA Astrophysics Data System (ADS)

Ma, C.; Zhang, X.; Song, X.; Xu, X.

2016-12-01

The thickness of the active layer, near-surface layer of Earth material above permafrost undergoing seasonal freezing and thawing, is of considerable importance in high-latitude environments because most physical, chemical, and biological processes in the permafrost region take place within it. The dynamics of active layer thickness (ALT) result from a combination of various factors including heat transfer, soil water content, soil texture, root density, stem density, moss layer thickness, organic layer thickness, etc. However, the magnitude and controls of ALT in the permafrost region remain uncertain. The purpose of this study is to improve our understanding of the dynamics of ALT across Alaskan tundra ecosystems and their controls at multiple scales, ranging from plots to entire Alaska. This study compiled a comprehensive dataset of ALT at site and regional scales across the Alaskan tundra ecosystems, and further analyzed ALT dynamics and their hierarchical controls. We found that air temperature played a predominant role on the seasonality of ALT, regulated by other physical and chemical factors including soil texture, moisture, and root density. The structural equation modeling (SEM) analysis confirmed the predominant role of physical controls (dominated by heat and soil properties), followed by chemical and biological factors. Then a simple empirical model was developed to reconstruct the ALT across the Alaska. The comparisons against field observational data show that the method used in this study is robust; the reconstructed time-series ALT across Alaska provides a valuable dataset source for understanding ALT and validating large-scale ecosystem models.

Perturbation theory for BAO reconstructed fields: One-loop results in the real-space matter density field

NASA Astrophysics Data System (ADS)

Hikage, Chiaki; Koyama, Kazuya; Heavens, Alan

2017-08-01

We compute the power spectrum at one-loop order in standard perturbation theory for the matter density field to which a standard Lagrangian baryonic acoustic oscillation (BAO) reconstruction technique is applied. The BAO reconstruction method corrects the bulk motion associated with the gravitational evolution using the inverse Zel'dovich approximation (ZA) for the smoothed density field. We find that the overall amplitude of one-loop contributions in the matter power spectrum substantially decreases after reconstruction. The reconstructed power spectrum thereby approaches the initial linear spectrum when the smoothed density field is close enough to linear, i.e., the smoothing scale Rs≳10 h-1 Mpc . On smaller Rs, however, the deviation from the linear spectrum becomes significant on large scales (k ≲Rs-1 ) due to the nonlinearity in the smoothed density field, and the reconstruction is inaccurate. Compared with N-body simulations, we show that the reconstructed power spectrum at one-loop order agrees with simulations better than the unreconstructed power spectrum. We also calculate the tree-level bispectrum in standard perturbation theory to investigate non-Gaussianity in the reconstructed matter density field. We show that the amplitude of the bispectrum significantly decreases for small k after reconstruction and that the tree-level bispectrum agrees well with N-body results in the weakly nonlinear regime.

Removal of two large-scale cosmic microwave background anomalies after subtraction of the integrated Sachs-Wolfe effect

NASA Astrophysics Data System (ADS)

Rassat, A.; Starck, J.-L.; Dupé, F.-X.

2013-09-01

Context. Although there is currently a debate over the significance of the claimed large-scale anomalies in the cosmic microwave background (CMB), their existence is not totally dismissed. In parallel to the debate over their statistical significance, recent work has also focussed on masks and secondary anisotropies as potential sources of these anomalies. Aims: In this work we investigate simultaneously the impact of the method used to account for masked regions as well as the impact of the integrated Sachs-Wolfe (ISW) effect, which is the large-scale secondary anisotropy most likely to affect the CMB anomalies. In this sense, our work is an update of previous works. Our aim is to identify trends in CMB data from different years and with different mask treatments. Methods: We reconstruct the ISW signal due to 2 Micron All-Sky Survey (2MASS) and NRAO VLA Sky Survey (NVSS) galaxies, effectively reconstructing the low-redshift ISW signal out to z ~ 1. We account for regions of missing data using the sparse inpainting technique. We test sparse inpainting of the CMB, large scale structure and ISW and find that it constitutes a bias-free reconstruction method suitable to study large-scale statistical isotropy and the ISW effect. Results: We focus on three large-scale CMB anomalies: the low quadrupole, the quadrupole/octopole alignment, and the octopole planarity. After sparse inpainting, the low quadrupole becomes more anomalous, whilst the quadrupole/octopole alignment becomes less anomalous. The significance of the low quadrupole is unchanged after subtraction of the ISW effect, while the trend amongst the CMB maps is that both the low quadrupole and the quadrupole/octopole alignment have reduced significance, yet other hypotheses remain possible as well (e.g. exotic physics). Our results also suggest that both of these anomalies may be due to the quadrupole alone. While the octopole planarity significance is reduced after inpainting and after ISW subtraction, however, we do not find that it was very anomalous to start with. In the spirit of participating in reproducible research, we make all codes and resulting products which constitute main results of this paper public here: http://www.cosmostat.org/anomaliesCMB.html

Synchronous multi-decadal climate variability of the whole Pacific areas revealed in tree rings since 1567

NASA Astrophysics Data System (ADS)

Fang, Keyan; Cook, Edward; Guo, Zhengtang; Chen, Deliang; Ou, Tinghai; Zhao, Yan

2018-02-01

Oceanic and atmospheric patterns play a crucial role in modulating climate variability from interannual to multi-decadal timescales by causing large-scale co-varying climate changes. The brevity of the existing instrumental records hinders the ability to recognize climate patterns before the industrial era, which can be alleviated using proxies. Unfortunately, proxy based reconstructions of oceanic and atmospheric modes of the past millennia often have modest agreements with each other before the instrumental period, raising questions about the robustness of the reconstructions. To ensure the stability of climate signals in proxy data through time, we first identified tree-ring datasets from distant regions containing coherent variations in Asia and North America, and then interpreted their climate information. We found that the multi-decadal covarying climate patterns of the middle and high latitudinal regions around the northern Pacific Ocean agreed quite well with the climate reconstructions of the tropical and southern Pacific areas. This indicates a synchronous variability at the multi-decadal timescale of the past 430 years for the entire Pacific Ocean. This pattern is closely linked to the dominant mode of the Pacific sea surface temperature (SST) after removing the warming trend. This Pacific multi-decadal SST variability resembles the Interdecadal Pacific Oscillation.

Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals

NASA Astrophysics Data System (ADS)

Li, Xin; Li, Jing

Haplotypes, as they specify the linkage patterns between dispersed genetic variations, provide important information for understanding the genetics of human traits. However haplotypes are not directly available from current genotyping platforms, and hence there are extensive investigations of computational methods to recover such information. Two major computational challenges arising in current family-based disease studies are large family sizes and many ungenotyped family members. Traditional haplotyping methods can neither handle large families nor families with missing members. In this paper, we propose a method which addresses these issues by integrating multiple novel techniques. The method consists of three major components: pairwise identical-bydescent (IBD) inference, global IBD reconstruction and haplotype restoring. By reconstructing the global IBD of a family from pairwise IBD and then restoring the haplotypes based on the inferred IBD, this method can scale to large pedigrees, and more importantly it can handle families with missing members. Compared with existing methods, this method demonstrates much higher power to recover haplotype information, especially in families with many untyped individuals.

Optimizing Aesthetic Outcomes in Delayed Breast Reconstruction

PubMed Central

2017-01-01

Background: The need to restore both the missing breast volume and breast surface area makes achieving excellent aesthetic outcomes in delayed breast reconstruction especially challenging. Autologous breast reconstruction can be used to achieve both goals. The aim of this study was to identify surgical maneuvers that can optimize aesthetic outcomes in delayed breast reconstruction. Methods: This is a retrospective review of operative and clinical records of all patients who underwent unilateral or bilateral delayed breast reconstruction with autologous tissue between April 2014 and January 2017. Three groups of delayed breast reconstruction patients were identified based on patient characteristics. Results: A total of 26 flaps were successfully performed in 17 patients. Key surgical maneuvers for achieving aesthetically optimal results were identified. A statistically significant difference for volume requirements was identified in cases where a delayed breast reconstruction and a contralateral immediate breast reconstruction were performed simultaneously. Conclusions: Optimal aesthetic results can be achieved with: (1) restoration of breast skin envelope with tissue expansion when possible, (2) optimal positioning of a small skin paddle to be later incorporated entirely into a nipple areola reconstruction when adequate breast skin surface area is present, (3) limiting the reconstructed breast mound to 2 skin tones when large area skin resurfacing is required, (4) increasing breast volume by deepithelializing, not discarding, the inferior mastectomy flap skin, (5) eccentric division of abdominal flaps when an immediate and delayed bilateral breast reconstructions are performed simultaneously; and (6) performing second-stage breast reconstruction revisions and fat grafting. PMID:28894666

Fast alternating projection methods for constrained tomographic reconstruction

PubMed Central

Liu, Li; Han, Yongxin

2017-01-01

The alternating projection algorithms are easy to implement and effective for large-scale complex optimization problems, such as constrained reconstruction of X-ray computed tomography (CT). A typical method is to use projection onto convex sets (POCS) for data fidelity, nonnegative constraints combined with total variation (TV) minimization (so called TV-POCS) for sparse-view CT reconstruction. However, this type of method relies on empirically selected parameters for satisfactory reconstruction and is generally slow and lack of convergence analysis. In this work, we use a convex feasibility set approach to address the problems associated with TV-POCS and propose a framework using full sequential alternating projections or POCS (FS-POCS) to find the solution in the intersection of convex constraints of bounded TV function, bounded data fidelity error and non-negativity. The rationale behind FS-POCS is that the mathematically optimal solution of the constrained objective function may not be the physically optimal solution. The breakdown of constrained reconstruction into an intersection of several feasible sets can lead to faster convergence and better quantification of reconstruction parameters in a physical meaningful way than that in an empirical way of trial-and-error. In addition, for large-scale optimization problems, first order methods are usually used. Not only is the condition for convergence of gradient-based methods derived, but also a primal-dual hybrid gradient (PDHG) method is used for fast convergence of bounded TV. The newly proposed FS-POCS is evaluated and compared with TV-POCS and another convex feasibility projection method (CPTV) using both digital phantom and pseudo-real CT data to show its superior performance on reconstruction speed, image quality and quantification. PMID:28253298

Articular scaling and body mass estimation in platyrrhines and catarrhines: Modern variation and application to fossil anthropoids.

PubMed

Perry, Jonathan M G; Cooke, Siobhán B; Runestad Connour, Jacqueline A; Burgess, M Loring; Ruff, Christopher B

2018-02-01

Body mass is an important component of any paleobiological reconstruction. Reliable skeletal dimensions for making estimates are desirable but extant primate reference samples with known body masses are rare. We estimated body mass in a sample of extinct platyrrhines and Fayum anthropoids based on four measurements of the articular surfaces of the humerus and femur. Estimates were based on a large extant reference sample of wild-collected individuals with associated body masses, including previously published and new data from extant platyrrhines, cercopithecoids, and hominoids. In general, scaling of joint dimensions is positively allometric relative to expectations of geometric isometry, but negatively allometric relative to expectations of maintaining equivalent joint surface areas. Body mass prediction equations based on articular breadths are reasonably precise, with %SEEs of 17-25%. The breadth of the distal femoral articulation yields the most reliable estimates of body mass because it scales similarly in all major anthropoid taxa. Other joints scale differently in different taxa; therefore, locomotor style and phylogenetic affinity must be considered when calculating body mass estimates from the proximal femur, proximal humerus, and distal humerus. The body mass prediction equations were applied to 36 Old World and New World fossil anthropoid specimens representing 11 taxa, plus two Haitian specimens of uncertain taxonomic affinity. Among the extinct platyrrhines studied, only Cebupithecia is similar to large, extant platyrrhines in having large humeral (especially distal) joints. Our body mass estimates differ from each other and from published estimates based on teeth in ways that reflect known differences in relative sizes of the joints and teeth. We prefer body mass estimators that are biomechanically linked to weight-bearing, and especially those that are relatively insensitive to differences in locomotor style and phylogenetic history. Whenever possible, extant reference samples should be chosen to match target fossils in joint proportionality. Copyright © 2017 Elsevier Ltd. All rights reserved.

Continental-scale temperature covariance in proxy reconstructions and climate models

NASA Astrophysics Data System (ADS)

Hartl-Meier, Claudia; Büntgen, Ulf; Smerdon, Jason; Zorita, Eduardo; Krusic, Paul; Ljungqvist, Fredrik; Schneider, Lea; Esper, Jan

2017-04-01

Inter-continental temperature variability over the past millennium has been reported to be more coherent in climate model simulations than in multi-proxy-based reconstructions, a finding that undermines the representation of spatial variability in either of these approaches. We assess the covariance of summer temperatures among Northern Hemisphere continents by comparing tree-ring based temperature reconstructions with state-of-the-art climate model simulations over the past millennium. We find inter-continental temperature covariance to be larger in tree-ring-only reconstructions compared to those derived from multi-proxy networks, thus enhancing the agreement between proxy- and model-based spatial representations. A detailed comparison of simulated temperatures, however, reveals substantial spread among the models. Over the past millennium, inter-continental temperature correlations are driven by the cooling after major volcanic eruptions in 1257, 1452, 1601, and 1815. The coherence of these synchronizing events appears to be elevated in several climate simulations relative to their own covariance baselines and the proxy reconstructions, suggesting these models overestimate the amplitude of cooling in response to volcanic forcing at large spatial scales.

Filling the Eastern European gap in millennium-long temperature reconstructions

PubMed Central

Büntgen, Ulf; Kyncl, Tomáš; Ginzler, Christian; Jacks, David S.; Esper, Jan; Tegel, Willy; Heussner, Karl-Uwe; Kyncl, Josef

2013-01-01

Tree ring–based temperature reconstructions form the scientific backbone of the current global change debate. Although some European records extend into medieval times, high-resolution, long-term, regional-scale paleoclimatic evidence is missing for the eastern part of the continent. Here we compile 545 samples of living trees and historical timbers from the greater Tatra region to reconstruct interannual to centennial-long variations in Eastern European May–June temperature back to 1040 AD. Recent anthropogenic warming exceeds the range of past natural climate variability. Increased plague outbreaks and political conflicts, as well as decreased settlement activities, coincided with temperature depressions. The Black Death in the mid-14th century, the Thirty Years War in the early 17th century, and the French Invasion of Russia in the early 19th century all occurred during the coldest episodes of the last millennium. A comparison with summer temperature reconstructions from Scandinavia, the Alps, and the Pyrenees emphasizes the seasonal and spatial specificity of our results, questioning those large-scale reconstructions that simply average individual sites. PMID:23319641

Image reconstruction of muon tomographic data using a density-based clustering method

NASA Astrophysics Data System (ADS)

Perry, Kimberly B.

Muons are subatomic particles capable of reaching the Earth's surface before decaying. When these particles collide with an object that has a high atomic number (Z), their path of travel changes substantially. Tracking muon movement through shielded containers can indicate what types of materials lie inside. This thesis proposes using a density-based clustering algorithm called OPTICS to perform image reconstructions using muon tomographic data. The results show that this method is capable of detecting high-Z materials quickly, and can also produce detailed reconstructions with large amounts of data.

Three-dimensional Reconstruction of Block Shape Irregularity and its Effects on Block Impacts Using an Energy-Based Approach

NASA Astrophysics Data System (ADS)

Zhang, Yulong; Liu, Zaobao; Shi, Chong; Shao, Jianfu

2018-04-01

This study is devoted to three-dimensional modeling of small falling rocks in block impact analysis in energy view using the particle flow method. The restitution coefficient of rockfall collision is introduced from the energy consumption mechanism to describe rockfall-impacting properties. Three-dimensional reconstruction of falling block is conducted with the help of spherical harmonic functions that have satisfactory mathematical properties such as orthogonality and rotation invariance. Numerical modeling of the block impact to the bedrock is analyzed with both the sphere-simplified model and the 3D reconstructed model. Comparisons of the obtained results suggest that the 3D reconstructed model is advantageous in considering the combination effects of rockfall velocity and rotations during colliding process. Verification of the modeling is carried out with the results obtained from other experiments. In addition, the effects of rockfall morphology, surface characteristics, velocity, and volume, colliding damping and relative angle are investigated. A three-dimensional reconstruction modulus of falling blocks is to be developed and incorporated into the rockfall simulation tools in order to extend the modeling results at block scale to slope scale.

Was the Little Ice Age more or less El Niño-like than the Mediaeval Climate Anomaly? Evidence from hydrological and temperature proxy data

NASA Astrophysics Data System (ADS)

Henke, L. M. K.; Lambert, F. H.; Charman, D. J.

2015-11-01

The El Niño-Southern Oscillation (ENSO), an ocean-atmosphere coupled oscillation over the equatorial Pacific, is the most important source of global climate variability on inter-annual time scales. It has substantial environmental and socio-economic consequences such as devastation of South American fish populations and increased forest fires in Indonesia. The instrumental ENSO record is too short for analysing long-term trends and variability, hence proxy data is used to extend the record. However, different proxy sources have produced varying reconstructions of ENSO, with some evidence for a temperature-precipitation divergence in ENSO trends over the past millennium, in particular during the Mediaeval Climate Anomaly (MCA; AD 800-1300) and the Little Ice Age (LIA; AD 1400-1850). This throws into question the stability of the modern ENSO system and its links to the global climate, which has implications for future projections. Here we use a new statistical approach using EOF-based weighting to create two new large-scale ENSO reconstructions derived independently from precipitation proxies and temperature proxies respectively. The method is developed and validated using pseudoproxy experiments that address the effects of proxy dating error, resolution and noise to improve uncertainty estimations. The precipitation ENSO reconstruction displays a significantly more El Niño-like state during the LIA than the MCA, while the temperature reconstruction shows no significant difference. The trends shown in the precipitation ENSO reconstruction are relatively robust to variations in the precipitation EOF pattern. However, the temperature reconstruction suffers significantly from a lack of high-quality, favourably located proxy records, which limits its ability to capture the large-scale ENSO signal. Further expansion of the palaeo-database and improvements to instrumental, satellite and model representations of ENSO are needed to fully resolve the discrepancies found among proxy records.

The effect of the geomagnetic field on cosmic ray energy estimates and large scale anisotropy searches on data from the Pierre Auger Observatory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abreu, P.; /Lisbon, IST; Aglietta, M.

2011-11-01

We present a comprehensive study of the influence of the geomagnetic field on the energy estimation of extensive air showers with a zenith angle smaller than 60{sup o}, detected at the Pierre Auger Observatory. The geomagnetic field induces an azimuthal modulation of the estimated energy of cosmic rays up to the {approx} 2% level at large zenith angles. We present a method to account for this modulation of the reconstructed energy. We analyse the effect of the modulation on large scale anisotropy searches in the arrival direction distributions of cosmic rays. At a given energy, the geomagnetic effect is shownmore » to induce a pseudo-dipolar pattern at the percent level in the declination distribution that needs to be accounted for. In this work, we have identified and quantified a systematic uncertainty affecting the energy determination of cosmic rays detected by the surface detector array of the Pierre Auger Observatory. This systematic uncertainty, induced by the influence of the geomagnetic field on the shower development, has a strength which depends on both the zenith and the azimuthal angles. Consequently, we have shown that it induces distortions of the estimated cosmic ray event rate at a given energy at the percent level in both the azimuthal and the declination distributions, the latter of which mimics an almost dipolar pattern. We have also shown that the induced distortions are already at the level of the statistical uncertainties for a number of events N {approx_equal} 32 000 (we note that the full Auger surface detector array collects about 6500 events per year with energies above 3 EeV). Accounting for these effects is thus essential with regard to the correct interpretation of large scale anisotropy measurements taking explicitly profit from the declination distribution.« less

Pollen-based continental climate reconstructions at 6 and 21 ka: A global synthesis

USGS Publications Warehouse

Bartlein, P.J.; Harrison, S.P.; Brewer, Sandra; Connor, S.; Davis, B.A.S.; Gajewski, K.; Guiot, J.; Harrison-Prentice, T. I.; Henderson, A.; Peyron, O.; Prentice, I.C.; Scholze, M.; Seppa, H.; Shuman, B.; Sugita, S.; Thompson, R.S.; Viau, A.E.; Williams, J.; Wu, H.

2011-01-01

Subfossil pollen and plant macrofossil data derived from 14C-dated sediment profiles can provide quantitative information on glacial and interglacial climates. The data allow climate variables related to growing-season warmth, winter cold, and plant-available moisture to be reconstructed. Continental-scale reconstructions have been made for the mid-Holocene (MH, around 6 ka) and Last Glacial Maximum (LGM, around 21 ka), allowing comparison with palaeoclimate simulations currently being carried out as part of the fifth Assessment Report (AR5) of the Intergovernmental Panel on Climate Change. The synthesis of the available MH and LGM climate reconstructions and their uncertainties, obtained using modern-analogue, regression and model-inversion techniques, is presented for four temperature variables and two moisture variables. Reconstructions of the same variables based on surface-pollen assemblages are shown to be accurate and unbiased. Reconstructed LGM and MH climate anomaly patterns are coherent, consistent between variables, and robust with respect to the choice of technique. They support a conceptual model of the controls of Late Quaternary climate change whereby the first-order effects of orbital variations and greenhouse forcing on the seasonal cycle of temperature are predictably modified by responses of the atmospheric circulation and surface energy balance. ?? 2010 The Author(s).

Internal Climatic Influences From Secular To Multi-decadal Scales: Comparison Of NAO Reconstructions.

NASA Astrophysics Data System (ADS)

Nicolle, M.; Debret, M.; Massei, N.; de Vernal, A.

2017-12-01

In the Northern Hemisphere, the North Atlantic Oscillation (NAO) is the major dominant mode of variability in winter atmospheric circulation, with large impacts on temperature, precipitation and storm tracks in the North Atlantic sector. To understand the role of this internal climatic oscillations on the past climate variability, several proxy-based reconstructions of the NAO were published during the last decades. Two of them are available during the past 1,200 years: a first NAO reconstruction published by Trouet et al. (2009) and a second proposed by Ortega et al. (2015). The major discrepancy between the two reconstructions concerns the transition period between the Medieval Climate Anomaly (MCA) and the Little Ice Age. The first NAO reconstruction shows persistent positive phases during the MCA (AD 1000-1300) but this dominant trend is not highlighted in the reconstruction proposed by Ortega et al. (2015), asking the question of the influence of predictors used to reconstruct the NAO signal during the last millennia. In these study, we compare the two NAO reconstructions in order to determine the effect of bi-proxy or multi-proxy approach on the signal reconstructed. Using statistical and wavelet analysis methods, we conclude that the number of predictors used do not have impact on the signal reconstruct. The two reconstructions signals are characterized by similar variabilities expressed from multi-decadal to multi-secular scales. The major trend difference seems to be link to the type of the predictor and particularly the use of Greenland ice cores in the reconstruction proposed in 2015.

Sensor fusion of cameras and a laser for city-scale 3D reconstruction.

PubMed

Bok, Yunsu; Choi, Dong-Geol; Kweon, In So

2014-11-04

This paper presents a sensor fusion system of cameras and a 2D laser sensorfor large-scale 3D reconstruction. The proposed system is designed to capture data on afast-moving ground vehicle. The system consists of six cameras and one 2D laser sensor,and they are synchronized by a hardware trigger. Reconstruction of 3D structures is doneby estimating frame-by-frame motion and accumulating vertical laser scans, as in previousworks. However, our approach does not assume near 2D motion, but estimates free motion(including absolute scale) in 3D space using both laser data and image features. In orderto avoid the degeneration associated with typical three-point algorithms, we present a newalgorithm that selects 3D points from two frames captured by multiple cameras. The problemof error accumulation is solved by loop closing, not by GPS. The experimental resultsshow that the estimated path is successfully overlaid on the satellite images, such that thereconstruction result is very accurate.

A Tibetan lake sediment record of Holocene Indian summer monsoon variability

NASA Astrophysics Data System (ADS)

Bird, Broxton W.; Polisar, Pratigya J.; Lei, Yanbin; Thompson, Lonnie G.; Yao, Tandong; Finney, Bruce P.; Bain, Daniel J.; Pompeani, David P.; Steinman, Byron A.

2014-08-01

Sedimentological data and hydrogen isotopic measurements of leaf wax long-chain n-alkanes (δDwax) from an alpine lake sediment archive on the southeastern Tibetan Plateau (Paru Co) provide a Holocene perspective of Indian summer monsoon (ISM) activity. The sedimentological data reflect variations in lake level and erosion related to local ISM rainfall over the Paru Co catchment, whereas δDwax reflects integrated, synoptic-scale ISM dynamics. Our results indicate that maximum ISM rainfall occurred between 10.1 and ˜5.2 ka, during which time there were five century-scale high and low lake stands. After 5.2 ka, the ISM trended toward drier conditions to the present, with the exception of a pluvial event centered at 0.9 ka. The Paru Co results share similarities with paleoclimate records from across the Tibetan Plateau, suggesting millennial-scale ISM dynamics were expressed coherently. These millennial variations largely track gradual decreases in orbital insolation, the southward migration of the Intertropical Convergence Zone (ITCZ), decreasing zonal Pacific sea surface temperature (SST) gradients and cooling surface air temperatures on the Tibetan Plateau. Centennial ISM and lake-level variability at Paru Co closely track reconstructed surface air temperatures on the Tibetan Plateau, but may also reflect Indian Ocean Dipole events, particularly during the early Holocene when ENSO variability was attenuated. Variations in the latitude of the ITCZ during the early and late Holocene also appear to have exerted an influence on centennial ISM rainfall.

Joint reconstruction of activity and attenuation in Time-of-Flight PET: A Quantitative Analysis.

PubMed

Rezaei, Ahmadreza; Deroose, Christophe M; Vahle, Thomas; Boada, Fernando; Nuyts, Johan

2018-03-01

Joint activity and attenuation reconstruction methods from time of flight (TOF) positron emission tomography (PET) data provide an effective solution to attenuation correction when no (or incomplete/inaccurate) information on the attenuation is available. One of the main barriers limiting their use in clinical practice is the lack of validation of these methods on a relatively large patient database. In this contribution, we aim at validating the activity reconstructions of the maximum likelihood activity reconstruction and attenuation registration (MLRR) algorithm on a whole-body patient data set. Furthermore, a partial validation (since the scale problem of the algorithm is avoided for now) of the maximum likelihood activity and attenuation reconstruction (MLAA) algorithm is also provided. We present a quantitative comparison of the joint reconstructions to the current clinical gold-standard maximum likelihood expectation maximization (MLEM) reconstruction with CT-based attenuation correction. Methods: The whole-body TOF-PET emission data of each patient data set is processed as a whole to reconstruct an activity volume covering all the acquired bed positions, which helps to reduce the problem of a scale per bed position in MLAA to a global scale for the entire activity volume. Three reconstruction algorithms are used: MLEM, MLRR and MLAA. A maximum likelihood (ML) scaling of the single scatter simulation (SSS) estimate to the emission data is used for scatter correction. The reconstruction results are then analyzed in different regions of interest. Results: The joint reconstructions of the whole-body patient data set provide better quantification in case of PET and CT misalignments caused by patient and organ motion. Our quantitative analysis shows a difference of -4.2% (±2.3%) and -7.5% (±4.6%) between the joint reconstructions of MLRR and MLAA compared to MLEM, averaged over all regions of interest, respectively. Conclusion: Joint activity and attenuation estimation methods provide a useful means to estimate the tracer distribution in cases where CT-based attenuation images are subject to misalignments or are not available. With an accurate estimate of the scatter contribution in the emission measurements, the joint TOF-PET reconstructions are within clinical acceptable accuracy. Copyright © 2018 by the Society of Nuclear Medicine and Molecular Imaging, Inc.

Free tarsomarginal graft for large congenital coloboma repair in patients with Tessier number 10 clefts.

PubMed

Fu, Yao; Shao, Chunyi; Lu, Wenjuan; Li, Jin; Fan, Xianqun

2016-08-01

The aim of this study was to evaluate the long-term outcome when a free tarsomarginal graft is used to repair a large congenital coloboma in patients with a Tessier number 10 cleft. This was a retrospective, interventional case series. The medical records were reviewed for five children (six eyes) diagnosed as having Tessier number 10 cleft with large upper eyelid defects and symblepharon. These children were referred to the Department of Ophthalmology of Shanghai Ninth People's Hospital, between May 2007 and December 2012. Reconstructive techniques included repair of the upper eyelid defect with a free tarsomarginal graft taken from the lower eyelid, and reconstruction of the conjunctival fornix by using a conjunctival autograft after symblepharon lysis. All the children were followed up for more than 2 years. Postoperative upper eyelid contour, viability and function for corneal protection, and recurrence of symblepharon were assessed. A one-stage reconstruction procedure was used in all children. All reconstructed eyelids achieved a surgical goal of providing corneal protection and improved cosmesis, with marked improvement of exposure keratopathy and no associated lagophthalmos. Adequate reconstruction of the upper fornix was obtained, and there was no obvious recurrence of symblepharon. A free tarsomarginal graft is beneficial and seems to be an adequate method for reconstruction of large eyelid defects in children with a Tessier number 10 cleft. Symblepharon lysis with a conjunctival autograft for reconstruction of the ocular surface can be performed at the same time as eyelid repair as a one-stage procedure. Copyright © 2016. Published by Elsevier Ltd.

Supersonic Flight Dynamics Test 2: Trajectory, Atmosphere, and Aerodynamics Reconstruction

NASA Technical Reports Server (NTRS)

Karlgaard, Christopher D.; O'Farrell, Clara; Ginn, Jason M.; Van Norman, John W.

2016-01-01

The Supersonic Flight Dynamics Test is a full-scale flight test of aerodynamic decelerator technologies developed by the Low Density Supersonic Decelerator technology demonstration project. The purpose of the project is to develop and mature aerodynamic decelerator technologies for landing large-mass payloads on the surface of Mars. The technologies include a Supersonic Inflatable Aerodynamic Decelerator and supersonic parachutes. The first Supersonic Flight Dynamics Test occurred on June 28th, 2014 at the Pacific Missile Range Facility. The purpose of this test was to validate the test architecture for future tests. The flight was a success and, in addition, was able to acquire data on the aerodynamic performance of the supersonic inflatable decelerator. The Supersonic Disksail parachute developed a tear during deployment. The second flight test occurred on June 8th, 2015, and incorporated a Supersonic Ringsail parachute which was redesigned based on data from the first flight. Again, the inflatable decelerator functioned as predicted but the parachute was damaged during deployment. This paper describes the instrumentation, analysis techniques, and acquired flight test data utilized to reconstruct the vehicle trajectory, main motor thrust, atmosphere, and aerodynamics.

EEGNET: An Open Source Tool for Analyzing and Visualizing M/EEG Connectome.

PubMed

Hassan, Mahmoud; Shamas, Mohamad; Khalil, Mohamad; El Falou, Wassim; Wendling, Fabrice

2015-01-01

The brain is a large-scale complex network often referred to as the "connectome". Exploring the dynamic behavior of the connectome is a challenging issue as both excellent time and space resolution is required. In this context Magneto/Electroencephalography (M/EEG) are effective neuroimaging techniques allowing for analysis of the dynamics of functional brain networks at scalp level and/or at reconstructed sources. However, a tool that can cover all the processing steps of identifying brain networks from M/EEG data is still missing. In this paper, we report a novel software package, called EEGNET, running under MATLAB (Math works, inc), and allowing for analysis and visualization of functional brain networks from M/EEG recordings. EEGNET is developed to analyze networks either at the level of scalp electrodes or at the level of reconstructed cortical sources. It includes i) Basic steps in preprocessing M/EEG signals, ii) the solution of the inverse problem to localize / reconstruct the cortical sources, iii) the computation of functional connectivity among signals collected at surface electrodes or/and time courses of reconstructed sources and iv) the computation of the network measures based on graph theory analysis. EEGNET is the unique tool that combines the M/EEG functional connectivity analysis and the computation of network measures derived from the graph theory. The first version of EEGNET is easy to use, flexible and user friendly. EEGNET is an open source tool and can be freely downloaded from this webpage: https://sites.google.com/site/eegnetworks/.

EEGNET: An Open Source Tool for Analyzing and Visualizing M/EEG Connectome

PubMed Central

Hassan, Mahmoud; Shamas, Mohamad; Khalil, Mohamad; El Falou, Wassim; Wendling, Fabrice

2015-01-01

The brain is a large-scale complex network often referred to as the “connectome”. Exploring the dynamic behavior of the connectome is a challenging issue as both excellent time and space resolution is required. In this context Magneto/Electroencephalography (M/EEG) are effective neuroimaging techniques allowing for analysis of the dynamics of functional brain networks at scalp level and/or at reconstructed sources. However, a tool that can cover all the processing steps of identifying brain networks from M/EEG data is still missing. In this paper, we report a novel software package, called EEGNET, running under MATLAB (Math works, inc), and allowing for analysis and visualization of functional brain networks from M/EEG recordings. EEGNET is developed to analyze networks either at the level of scalp electrodes or at the level of reconstructed cortical sources. It includes i) Basic steps in preprocessing M/EEG signals, ii) the solution of the inverse problem to localize / reconstruct the cortical sources, iii) the computation of functional connectivity among signals collected at surface electrodes or/and time courses of reconstructed sources and iv) the computation of the network measures based on graph theory analysis. EEGNET is the unique tool that combines the M/EEG functional connectivity analysis and the computation of network measures derived from the graph theory. The first version of EEGNET is easy to use, flexible and user friendly. EEGNET is an open source tool and can be freely downloaded from this webpage: https://sites.google.com/site/eegnetworks/. PMID:26379232

Long-range persistence in the global mean surface temperature and the global warming "time bomb"

NASA Astrophysics Data System (ADS)

Rypdal, M.; Rypdal, K.

2012-04-01

Detrended Fluctuation Analysis (DFA) and Maximum Likelihood Estimations (MLE) based on instrumental data over the last 160 years indicate that there is Long-Range Persistence (LRP) in Global Mean Surface Temperature (GMST) on time scales of months to decades. The persistence is much higher in sea surface temperature than in land temperatures. Power spectral analysis of multi-model, multi-ensemble runs of global climate models indicate further that this persistence may extend to centennial and maybe even millennial time-scales. We also support these conclusions by wavelet variogram analysis, DFA, and MLE of Northern hemisphere mean surface temperature reconstructions over the last two millennia. These analyses indicate that the GMST is a strongly persistent noise with Hurst exponent H>0.9 on time scales from decades up to at least 500 years. We show that such LRP can be very important for long-term climate prediction and for the establishment of a "time bomb" in the climate system due to a growing energy imbalance caused by the slow relaxation to radiative equilibrium under rising anthropogenic forcing. We do this by the construction of a multi-parameter dynamic-stochastic model for the GMST response to deterministic and stochastic forcing, where LRP is represented by a power-law response function. Reconstructed data for total forcing and GMST over the last millennium are used with this model to estimate trend coefficients and Hurst exponent for the GMST on multi-century time scale by means of MLE. Ensembles of solutions generated from the stochastic model also allow us to estimate confidence intervals for these estimates.

The Role of Arctic Sea Ice in Last Millennium Climate Variability: Model-Proxy Comparisons Using Ensemble Members and Novel Model Experiments.

NASA Astrophysics Data System (ADS)

Gertler, C. G.; Monier, E.; Prinn, R. G.

2016-12-01

Variability in sea ice extent is a prominent feature of forced simulations of the last millennium and reconstructions of paleoclimate using proxy records. The rapid 20th century decline in sea ice extent is most likely due to greenhouse gas forcing, but the accuracy of future projections depend on the characterization of natural variability. Declining sea ice extent affects regional climate and society, but also plays a large role in Arctic amplification, with implications for mid-latitude circulation and even large-scale climate oscillations. To characterize the effects of natural and anthropogenic climate forcing on sea ice and the related changes in large-scale atmospheric circulation, a combination of instrumental record, paleoclimate reconstructions, and general circulation models can be employed to recreate sea ice extents and the corresponding atmosphere-ocean states. Model output from the last millennium ensemble (LME) is compared to a proxy-based sea ice reconstruction and a global proxy network using a variety of statistical and data assimilation techniques. Further model runs using the Community Earth Systems Model (CESM) are performed with the same inputs as LME but forced with experimental sea ice extents, and results are contextualized within the larger ensemble by a variety of metrics.

Efficient L1 regularization-based reconstruction for fluorescent molecular tomography using restarted nonlinear conjugate gradient.

PubMed

Shi, Junwei; Zhang, Bin; Liu, Fei; Luo, Jianwen; Bai, Jing

2013-09-15

For the ill-posed fluorescent molecular tomography (FMT) inverse problem, the L1 regularization can protect the high-frequency information like edges while effectively reduce the image noise. However, the state-of-the-art L1 regularization-based algorithms for FMT reconstruction are expensive in memory, especially for large-scale problems. An efficient L1 regularization-based reconstruction algorithm based on nonlinear conjugate gradient with restarted strategy is proposed to increase the computational speed with low memory consumption. The reconstruction results from phantom experiments demonstrate that the proposed algorithm can obtain high spatial resolution and high signal-to-noise ratio, as well as high localization accuracy for fluorescence targets.

Dustfall design of open coal yard in the power plant-a case study on the closed reconstruction project of coal storage yard in shengli power plant

NASA Astrophysics Data System (ADS)

Wang, Kunpeng; Ji, Weidong; Zhang, Feifei; Yu, Wei; Zheng, Runqing

2018-02-01

This thesis, based on the closed reconstruction project of the coal storage yard of Shengli Power Plant which is affiliated to Sinopec Shengli Petroleum Administration, first makes an analysis on the significance of current dustfall reconstruction of open coal yard, then summarizes the methods widely adopted in the dustfall of large-scale open coal storage yard of current thermal power plant as well as their advantages and disadvantages, and finally focuses on this project, aiming at providing some reference and assistance to the future closed reconstruction project of open coal storage yard in thermal power plant.

A Large number of fast cosmological simulations

NASA Astrophysics Data System (ADS)

Koda, Jun; Kazin, E.; Blake, C.

2014-01-01

Mock galaxy catalogs are essential tools to analyze large-scale structure data. Many independent realizations of mock catalogs are necessary to evaluate the uncertainties in the measurements. We perform 3600 cosmological simulations for the WiggleZ Dark Energy Survey to obtain the new improved Baron Acoustic Oscillation (BAO) cosmic distance measurements using the density field "reconstruction" technique. We use 1296^3 particles in a periodic box of 600/h Mpc on a side, which is the minimum requirement from the survey volume and observed galaxies. In order to perform such large number of simulations, we developed a parallel code using the COmoving Lagrangian Acceleration (COLA) method, which can simulate cosmological large-scale structure reasonably well with only 10 time steps. Our simulation is more than 100 times faster than conventional N-body simulations; one COLA simulation takes only 15 minutes with 216 computing cores. We have completed the 3600 simulations with a reasonable computation time of 200k core hours. We also present the results of the revised WiggleZ BAO distance measurement, which are significantly improved by the reconstruction technique.

A high-resolution record of Holocene millennial-scale oscillations of surface water, foraminiferal paleoecology and sediment redox chemistry in the SE Brazilian margin

NASA Astrophysics Data System (ADS)

Dias, B. B.; Barbosa, C. F.; Albuquerque, A. L.; Piotrowski, A. M.

2014-12-01

Holocene millennial-scale oscillations and Bond Events (Bond et al. 1997) are well reported in the North Atlantic as consequence of fresh water input and weaking of the Atlantic Meridional Overturning Circulation (AMOC). It has been hypothesized that the effect of weaking of AMOC would lead to warming in the South Atlantic due to "heat piracy", causing surface waters to warm and a reorganization of surface circulation. There are few reconstructions of AMOC strength in the South Atlantic, and none with a high resolution Holocene record of changes of productivity and the biological pump. We reconstruct past changes in the surface water mass hydrography, productivity, and sediment redox changes in high-resolution in the core KCF10-01B, located 128 mbsl water depth off Cabo Frio, Brazil, a location where upwelling is strongly linked to surface ocean hydrography. We use Benthic Foraminiferal Accumulation Rate (BFAR) to reconstruct productivity, which reveals a 1.3kyr cyclicity during the mid- and late-Holocene. The geochemistry of trace and rare earth elements on foraminiferal Fe-Mn oxide coatings show changes in redox-sensitive elements indicating that during periods of high productivity there were more reducing conditions in sediment porewaters, producing a Ce anomaly and reduction and re-precipitation of Mn oxides. Bond events 1-7 were identified by a productivity increase along with reducing sediment conditions which was likely caused by Brazil Current displacement offshore allowing upwelling of the nutritive bottom water South Atlantic Central Waters (SACW) to the euphotic zone and a stronger local biological pump. In a global context, correlation with other records show that this occurred during weakened AMOC and southward displacement of the ITCZ. We conclude that Bond climatic events and millennial-scale variability of AMOC caused sea surface hydrographic changes off the Brazilian Margin leading to biological and geochemical changes recorded in coastal records. The 8.2kyr climatic event is reported here for the first time in South American coastal sediment records as high productivity conditions and a rapid change in porewater redox chemistry.

Reverse engineering and analysis of large genome-scale gene networks

PubMed Central

Aluru, Maneesha; Zola, Jaroslaw; Nettleton, Dan; Aluru, Srinivas

2013-01-01

Reverse engineering the whole-genome networks of complex multicellular organisms continues to remain a challenge. While simpler models easily scale to large number of genes and gene expression datasets, more accurate models are compute intensive limiting their scale of applicability. To enable fast and accurate reconstruction of large networks, we developed Tool for Inferring Network of Genes (TINGe), a parallel mutual information (MI)-based program. The novel features of our approach include: (i) B-spline-based formulation for linear-time computation of MI, (ii) a novel algorithm for direct permutation testing and (iii) development of parallel algorithms to reduce run-time and facilitate construction of large networks. We assess the quality of our method by comparison with ARACNe (Algorithm for the Reconstruction of Accurate Cellular Networks) and GeneNet and demonstrate its unique capability by reverse engineering the whole-genome network of Arabidopsis thaliana from 3137 Affymetrix ATH1 GeneChips in just 9 min on a 1024-core cluster. We further report on the development of a new software Gene Network Analyzer (GeNA) for extracting context-specific subnetworks from a given set of seed genes. Using TINGe and GeNA, we performed analysis of 241 Arabidopsis AraCyc 8.0 pathways, and the results are made available through the web. PMID:23042249

A Skilful Marine Sclerochronological Network Based Reconstruction of North Atlantic Subpolar Gyre Dynamics

NASA Astrophysics Data System (ADS)

Reynolds, D.; Hall, I. R.; Slater, S. M.; Scourse, J. D.; Wanamaker, A. D.; Halloran, P. R.; Garry, F. K.

2017-12-01

Spatial network analyses of precisely dated, and annually resolved, tree-ring proxy records have facilitated robust reconstructions of past atmospheric climate variability and the associated mechanisms and forcings that drive it. In contrast, a lack of similarly dated marine archives has constrained the use of such techniques in the marine realm, despite the potential for developing a more robust understanding of the role basin scale ocean dynamics play in the global climate system. Here we show that a spatial network of marine molluscan sclerochronological oxygen isotope (δ18Oshell) series spanning the North Atlantic region provides a skilful reconstruction of basin scale North Atlantic sea surface temperatures (SSTs). Our analyses demonstrate that the composite marine series (referred to as δ18Oproxy_PC1) is significantly sensitive to inter-annual variability in North Atlantic SSTs (R=-0.61 P<0.01) and surface air temperatures (SATs; R=-0.67, P<0.01) over the 20th century. Subpolar gyre (SPG) SSTs dominates variability in the δ18Oproxy_PC1 series at sub-centennial frequencies (R=-0.51, P<0.01). Comparison of the δ18Oproxy_PC1 series against variability in the strength of the European Slope Current and maximum North Atlantic meridional overturning circulation derived from numeric climate models (CMIP5), indicates that variability in the SPG region, associated with the strength of the surface currents of the North Atlantic, are playing a significant role in shaping the multi-decadal scale SST variability over the industrial era. These analyses demonstrate that spatial networks developed from sclerochronological archives can provide powerful baseline archives of past ocean variability that can facilitate the development of a quantitative understanding for the role the oceans play in the global climate systems and constraining uncertainties in numeric climate models.

SPONTANEOUS FORMATION OF SURFACE MAGNETIC STRUCTURE FROM LARGE-SCALE DYNAMO IN STRONGLY STRATIFIED CONVECTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Masada, Youhei; Sano, Takayoshi, E-mail: ymasada@auecc.aichi-edu.ac.jp, E-mail: sano@ile.osaka-u.ac.jp

We report the first successful simulation of spontaneous formation of surface magnetic structures from a large-scale dynamo by strongly stratified thermal convection in Cartesian geometry. The large-scale dynamo observed in our strongly stratified model has physical properties similar to those in earlier weakly stratified convective dynamo simulations, indicating that the α {sup 2}-type mechanism is responsible for the dynamo. In addition to the large-scale dynamo, we find that large-scale structures of the vertical magnetic field are spontaneously formed in the convection zone (CZ) surface only in cases with a strongly stratified atmosphere. The organization of the vertical magnetic field proceedsmore » in the upper CZ within tens of convective turnover time and band-like bipolar structures recurrently appear in the dynamo-saturated stage. We consider several candidates to be possibly be the origin of the surface magnetic structure formation, and then suggest the existence of an as-yet-unknown mechanism for the self-organization of the large-scale magnetic structure, which should be inherent in the strongly stratified convective atmosphere.« less

Optimal Ranking Regime Analysis of TreeFlow Dendrohydrological Reconstructions

NASA Astrophysics Data System (ADS)

Mauget, S. A.

2017-12-01

The Optimal Ranking Regime (ORR) method was used to identify 6-100 year time windows containing significant ranking sequences in 55 western U.S. streamflow reconstructions, and reconstructions of the level of the Great Salt Lake and San Francisco Bay salinity during 1500-2007. The method's ability to identify optimally significant and non-overlapping runs of low and high rankings allows it to re-express a reconstruction time series as a simplified sequence of regime segments marking intra- to multi-decadal (IMD) periods of low or high streamflow, lake level, or salinity. Those ORR sequences, referred to here as Z-lines, can be plotted to identify consistent regime patterns in the analysis of numerous reconstructions. The Z-lines for the 57 reconstructions evaluated here show a common pattern of IMD cycles of drought and pluvial periods during the late 16th and 17th centuries, a relatively dormant period during the 18th century, and the reappearance of alternating dry and wet IMD periods during the 19th and early 20th centuries. Although this pattern suggests the possibility of similarly active and inactive oceanic modes in the North Pacific and North Atlantic, such centennial-scale patterns are not evident in the ORR analyses of reconstructed Pacific Decadal Oscillation (PDO), El Niño-Southern Oscillation, and North Atlantic seas-surface temperature variation. But given the inconsistency in the analyses of four PDO reconstructions the possible role of centennial-scale oceanic mechanisms is uncertain. In future research the ORR method might be applied to climate reconstructions around the Pacific Basin to try to resolve this uncertainty. Given its ability to compare regime patterns in climate reconstructions derived using different methods and proxies, the method may also be used in future research to evaluate long-term regional temperature reconstructions.

Comparisons between real and complex Gauss wavelet transform methods of three-dimensional shape reconstruction

NASA Astrophysics Data System (ADS)

Xu, Luopeng; Dan, Youquan; Wang, Qingyuan

2015-10-01

The continuous wavelet transform (CWT) introduces an expandable spatial and frequency window which can overcome the inferiority of localization characteristic in Fourier transform and windowed Fourier transform. The CWT method is widely applied in the non-stationary signal analysis field including optical 3D shape reconstruction with remarkable performance. In optical 3D surface measurement, the performance of CWT for optical fringe pattern phase reconstruction usually depends on the choice of wavelet function. A large kind of wavelet functions of CWT, such as Mexican Hat wavelet, Morlet wavelet, DOG wavelet, Gabor wavelet and so on, can be generated from Gauss wavelet function. However, so far, application of the Gauss wavelet transform (GWT) method (i.e. CWT with Gauss wavelet function) in optical profilometry is few reported. In this paper, the method using GWT for optical fringe pattern phase reconstruction is presented first and the comparisons between real and complex GWT methods are discussed in detail. The examples of numerical simulations are also given and analyzed. The results show that both the real GWT method along with a Hilbert transform and the complex GWT method can realize three-dimensional surface reconstruction; and the performance of reconstruction generally depends on the frequency domain appearance of Gauss wavelet functions. For the case of optical fringe pattern of large phase variation with position, the performance of real GWT is better than that of complex one due to complex Gauss series wavelets existing frequency sidelobes. Finally, the experiments are carried out and the experimental results agree well with our theoretical analysis.

Progress in the Development of a Global Quasi-3-D Multiscale Modeling Framework

NASA Astrophysics Data System (ADS)

Jung, J.; Konor, C. S.; Randall, D. A.

2017-12-01

The Quasi-3-D Multiscale Modeling Framework (Q3D MMF) is a second-generation MMF, which has following advances over the first-generation MMF: 1) The cloud-resolving models (CRMs) that replace conventional parameterizations are not confined to the large-scale dynamical-core grid cells, and are seamlessly connected to each other, 2) The CRMs sense the three-dimensional large- and cloud-scale environment, 3) Two perpendicular sets of CRM channels are used, and 4) The CRMs can resolve the steep surface topography along the channel direction. The basic design of the Q3D MMF has been developed and successfully tested in a limited-area modeling framework. Currently, global versions of the Q3D MMF are being developed for both weather and climate applications. The dynamical cores governing the large-scale circulation in the global Q3D MMF are selected from two cube-based global atmospheric models. The CRM used in the model is the 3-D nonhydrostatic anelastic Vector-Vorticity Model (VVM), which has been tested with the limited-area version for its suitability for this framework. As a first step of the development, the VVM has been reconstructed on the cubed-sphere grid so that it can be applied to global channel domains and also easily fitted to the large-scale dynamical cores. We have successfully tested the new VVM by advecting a bell-shaped passive tracer and simulating the evolutions of waves resulted from idealized barotropic and baroclinic instabilities. For improvement of the model, we also modified the tracer advection scheme to yield positive-definite results and plan to implement a new physics package that includes a double-moment microphysics and an aerosol physics. The interface for coupling the large-scale dynamical core and the VVM is under development. In this presentation, we shall describe the recent progress in the development and show some test results.

Pronounced centennial-scale Atlantic Ocean climate variability correlated with Western Hemisphere hydroclimate.

PubMed

Thirumalai, Kaustubh; Quinn, Terrence M; Okumura, Yuko; Richey, Julie N; Partin, Judson W; Poore, Richard Z; Moreno-Chamarro, Eduardo

2018-01-26

Surface-ocean circulation in the northern Atlantic Ocean influences Northern Hemisphere climate. Century-scale circulation variability in the Atlantic Ocean, however, is poorly constrained due to insufficiently-resolved paleoceanographic records. Here we present a replicated reconstruction of sea-surface temperature and salinity from a site sensitive to North Atlantic circulation in the Gulf of Mexico which reveals pronounced centennial-scale variability over the late Holocene. We find significant correlations on these timescales between salinity changes in the Atlantic, a diagnostic parameter of circulation, and widespread precipitation anomalies using three approaches: multiproxy synthesis, observational datasets, and a transient simulation. Our results demonstrate links between centennial changes in northern Atlantic surface-circulation and hydroclimate changes in the adjacent continents over the late Holocene. Notably, our findings reveal that weakened surface-circulation in the Atlantic Ocean was concomitant with well-documented rainfall anomalies in the Western Hemisphere during the Little Ice Age.

Pronounced centennial-scale Atlantic Ocean climate variability correlated with Western Hemisphere hydroclimate

USGS Publications Warehouse

Thirumalai, Kaustubh; Quinn, Terrence M.; Okumura, Yuko; Richey, Julie; Partin, Judson W.; Poore, Richard Z.; Moreno-Chamarro, Eduardo

2018-01-01

Surface-ocean circulation in the northern Atlantic Ocean influences Northern Hemisphere climate. Century-scale circulation variability in the Atlantic Ocean, however, is poorly constrained due to insufficiently-resolved paleoceanographic records. Here we present a replicated reconstruction of sea-surface temperature and salinity from a site sensitive to North Atlantic circulation in the Gulf of Mexico which reveals pronounced centennial-scale variability over the late Holocene. We find significant correlations on these timescales between salinity changes in the Atlantic, a diagnostic parameter of circulation, and widespread precipitation anomalies using three approaches: multiproxy synthesis, observational datasets, and a transient simulation. Our results demonstrate links between centennial changes in northern Atlantic surface-circulation and hydroclimate changes in the adjacent continents over the late Holocene. Notably, our findings reveal that weakened surface-circulation in the Atlantic Ocean was concomitant with well-documented rainfall anomalies in the Western Hemisphere during the Little Ice Age.

Investigating the Impact of Surface Heterogeneity on the Convective Boundary Layer Over Urban Areas Through Coupled Large-Eddy Simulation and Remote Sensing

NASA Technical Reports Server (NTRS)

Dominguez, Anthony; Kleissl, Jan P.; Luvall, Jeffrey C.

2011-01-01

Large-eddy Simulation (LES) was used to study convective boundary layer (CBL) flow through suburban regions with both large and small scale heterogeneities in surface temperature. Constant remotely sensed surface temperatures were applied at the surface boundary at resolutions of 10 m, 90 m, 200 m, and 1 km. Increasing the surface resolution from 1 km to 200 m had the most significant impact on the mean and turbulent flow characteristics as the larger scale heterogeneities became resolved. While previous studies concluded that scales of heterogeneity much smaller than the CBL inversion height have little impact on the CBL characteristics, we found that further increasing the surface resolution (resolving smaller scale heterogeneities) results in an increase in mean surface heat flux, thermal blending height, and potential temperature profile. The results of this study will help to better inform sub-grid parameterization for meso-scale meteorological models. The simulation tool developed through this study (combining LES and high resolution remotely sensed surface conditions) is a significant step towards future studies on the micro-scale meteorology in urban areas.

Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection and Boundary Deformation

PubMed Central

Shi, Yonggang; Lai, Rongjie; Morra, Jonathan H.; Dinov, Ivo; Thompson, Paul M.; Toga, Arthur W.

2010-01-01

In medical shape analysis, a critical problem is reconstructing a smooth surface of correct topology from a binary mask that typically has spurious features due to segmentation artifacts. The challenge is the robust removal of these outliers without affecting the accuracy of other parts of the boundary. In this paper, we propose a novel approach for this problem based on the Laplace-Beltrami (LB) eigen-projection and properly designed boundary deformations. Using the metric distortion during the LB eigen-projection, our method automatically detects the location of outliers and feeds this information to a well-composed and topology-preserving deformation. By iterating between these two steps of outlier detection and boundary deformation, we can robustly filter out the outliers without moving the smooth part of the boundary. The final surface is the eigen-projection of the filtered mask boundary that has the correct topology, desired accuracy and smoothness. In our experiments, we illustrate the robustness of our method on different input masks of the same structure, and compare with the popular SPHARM tool and the topology preserving level set method to show that our method can reconstruct accurate surface representations without introducing artificial oscillations. We also successfully validate our method on a large data set of more than 900 hippocampal masks and demonstrate that the reconstructed surfaces retain volume information accurately. PMID:20624704

Robust global ocean cooling trend for the pre-industrial Common Era

NASA Astrophysics Data System (ADS)

McGregor, Helen V.; Evans, Michael N.; Goosse, Hugues; Leduc, Guillaume; Martrat, Belen; Addison, Jason A.; Mortyn, P. Graham; Oppo, Delia W.; Seidenkrantz, Marit-Solveig; Sicre, Marie-Alexandrine; Phipps, Steven J.; Selvaraj, Kandasamy; Thirumalai, Kaustubh; Filipsson, Helena L.; Ersek, Vasile

2015-09-01

The oceans mediate the response of global climate to natural and anthropogenic forcings. Yet for the past 2,000 years -- a key interval for understanding the present and future climate response to these forcings -- global sea surface temperature changes and the underlying driving mechanisms are poorly constrained. Here we present a global synthesis of sea surface temperatures for the Common Era (CE) derived from 57 individual marine reconstructions that meet strict quality control criteria. We observe a cooling trend from 1 to 1800 CE that is robust against explicit tests for potential biases in the reconstructions. Between 801 and 1800 CE, the surface cooling trend is qualitatively consistent with an independent synthesis of terrestrial temperature reconstructions, and with a sea surface temperature composite derived from an ensemble of climate model simulations using best estimates of past external radiative forcings. Climate simulations using single and cumulative forcings suggest that the ocean surface cooling trend from 801 to 1800 CE is not primarily a response to orbital forcing but arises from a high frequency of explosive volcanism. Our results show that repeated clusters of volcanic eruptions can induce a net negative radiative forcing that results in a centennial and global scale cooling trend via a decline in mixed-layer oceanic heat content.

Robust global ocean cooling trend for the pre-industrial Common Era

USGS Publications Warehouse

McGregor, Helen V.; Evans, Michael N.; Goosse, Hugues; Leduc, Guillaume; Martrat, Belen; Addison, Jason A.; Mortyn, P. Graham; Oppo, Delia W.; Seidenkrantz, Marit-Solveig; Sicre, Marie-Alexandrine; Phipps, Steven J.; Selvaraj, Kandasamy; Thirumalai, Kaustubh; Filipsson, Helena L.; Ersek, Vasile

2015-01-01

The oceans mediate the response of global climate to natural and anthropogenic forcings. Yet for the past 2,000 years — a key interval for understanding the present and future climate response to these forcings — global sea surface temperature changes and the underlying driving mechanisms are poorly constrained. Here we present a global synthesis of sea surface temperatures for the Common Era (CE) derived from 57 individual marine reconstructions that meet strict quality control criteria. We observe a cooling trend from 1 to 1800 CEthat is robust against explicit tests for potential biases in the reconstructions. Between 801 and 1800 CE, the surface cooling trend is qualitatively consistent with an independent synthesis of terrestrial temperature reconstructions, and with a sea surface temperature composite derived from an ensemble of climate model simulations using best estimates of past external radiative forcings. Climate simulations using single and cumulative forcings suggest that the ocean surface cooling trend from 801 to 1800 CE is not primarily a response to orbital forcing but arises from a high frequency of explosive volcanism. Our results show that repeated clusters of volcanic eruptions can induce a net negative radiative forcing that results in a centennial and global scale cooling trend via a decline in mixed-layer oceanic heat content.

A tentative record of the last 1,000 years of Greenland temperature from occluded air in the GISP2 ice core

NASA Astrophysics Data System (ADS)

Kobashi, T.; Severinghaus, J. P.; Barnola, J.; Kawamura, K.; Beaudette, R.

2005-12-01

Ice borehole temperature inversion has been used to reconstruct Greenland surface temperature during the last millennium (Dahl-Jensen et al, Science, 1998). However, this technique does not preserve high frequencies because of diffusion of heat in the ice. Here, we present a tentative reconstruction of the past 1,000 years of central Greenland temperature using nitrogen and argon isotopes from occluded air in the GISP2 ice core. This technique preserves decadal-to-centennial-scale temperature variations and complements the borehole technique. Nitrogen and argon isotopes in the porous snow layer (~80m) experience two isotopic fractionations by gravitation and temperature gradients (ΔT) between the top and bottom of the snow layer. The simultaneous analysis of argon and nitrogen isotopes allows us to separate these two effects, and obtain a history of ΔT in the layer. To a first approximation, ΔT change on decadal to centennial time scales is a surface temperature history because the heat conductivity of snow is much smaller than that of ice, and the heat capacity of the ice sheet is quite large. The preliminary ΔT history (20-year interval) shows a Medieval Warm Period in the 11th to 12th centuries and the Little Ice Age in the 15th to 19th centuries. Furthermore, the record shows a clear similarity with the Be-10 record (a proxy for solar activity) with Wolf, Sporer, Maunder, and Dalton minima clearly seen in the cold periods. This finding is consistent with the hypothesis that solar activity influenced Greenland temperature during the past 1000 years.

Temperature variability inferred from tree-ring records in Weichang region, China, and its teleconnection with large-scale climate forcing

NASA Astrophysics Data System (ADS)

Wang, Yanchao; Liu, Yu; Zhang, Huifang; Wang, Hui; Guo, Jingli; Zhang, Erliang; Wang, Jun; Li, Xiao

2018-04-01

Based on the combination of two dendrochronologies, the annual mean temperature from May to June for the last 160 years was reconstructed in Weichang region, China, with the predictor variables accounting 43.3% of the variance during the calibration period of 1956-2012. Warm periods with temperature levels great than the mean (17.66 °C) occurred in 1853-1881, 1886-1891, 1904-1909, 1923-1930, 1964-1970, 1980-1988, 1998-2002 and 2007-2011; and cold periods with temperature levels less than the mean occurred in 1882-1885, 1892-1898, 1901-1903, 1910-1922, 1931-1963, 1971-1979, 1989-1997 and 2003-2006. The reconstruction showed that droughts usually occurred in the warm years. And the reconstructed temperature series showed an almost reverse trend to the total precipitation of previous August to present July from Chifeng-Weichang on inter-decadal scale, which indicate the basic feature of climate was warm-dry and cold-wet in Weichang region. The reconstructed temperature series showed a linear increasing trend with a rise 0.11 °C from 1880 to 2012. Comparisons with other temperature series revealed a consistently warming trend after the mid-1950s and confirmed a good repeatability and high reliability in our reconstruction. Spatial correlation implied the reconstruction could represent a regional temperature signal in the large parts of northern China and Central-Eastern Mongolia. The multi-taper method reveals several significant periodicities in our reconstruction over the past 160 years, suggesting possible linkages with the El Niño-Southern Oscillation, lunar gravity, Pacific Decadal Oscillation (PDO) and solar activity. Correlation analysis between the reconstruction and Southern Oscillation Index (SOI), lunar geocentric declination, PDO and sunspot number further demonstrates that the temperature variations in Weichang region are negatively correlated with SOI and positively correlated with lunar gravity, PDO and solar activity in the long term.

The Use of CASES-97 Observations to Assess and Parameterize the Impact of Land-Surface Heterogeneity on Area-Average Surface Heat Fluxes for Large-Scale Coupled Atmosphere-Hydrology Models

NASA Technical Reports Server (NTRS)

Chen, Fei; Yates, David; LeMone, Margaret

2001-01-01

To understand the effects of land-surface heterogeneity and the interactions between the land-surface and the planetary boundary layer at different scales, we develop a multiscale data set. This data set, based on the Cooperative Atmosphere-Surface Exchange Study (CASES97) observations, includes atmospheric, surface, and sub-surface observations obtained from a dense observation network covering a large region on the order of 100 km. We use this data set to drive three land-surface models (LSMs) to generate multi-scale (with three resolutions of 1, 5, and 10 kilometers) gridded surface heat flux maps for the CASES area. Upon validating these flux maps with measurements from surface station and aircraft, we utilize them to investigate several approaches for estimating the area-integrated surface heat flux for the CASES97 domain of 71x74 square kilometers, which is crucial for land surface model development/validation and area water and energy budget studies. This research is aimed at understanding the relative contribution of random turbulence versus organized mesoscale circulations to the area-integrated surface flux at the scale of 100 kilometers, and identifying the most important effective parameters for characterizing the subgrid-scale variability for large-scale atmosphere-hydrology models.

Sparse reconstruction localization of multiple acoustic emissions in large diameter pipelines

NASA Astrophysics Data System (ADS)

Dubuc, Brennan; Ebrahimkhanlou, Arvin; Salamone, Salvatore

2017-04-01

A sparse reconstruction localization method is proposed, which is capable of localizing multiple acoustic emission events occurring closely in time. The events may be due to a number of sources, such as the growth of corrosion patches or cracks. Such acoustic emissions may yield localization failure if a triangulation method is used. The proposed method is implemented both theoretically and experimentally on large diameter thin-walled pipes. Experimental examples are presented, which demonstrate the failure of a triangulation method when multiple sources are present in this structure, while highlighting the capabilities of the proposed method. The examples are generated from experimental data of simulated acoustic emission events. The data corresponds to helical guided ultrasonic waves generated in a 3 m long large diameter pipe by pencil lead breaks on its outer surface. Acoustic emission waveforms are recorded by six sparsely distributed low-profile piezoelectric transducers instrumented on the outer surface of the pipe. The same array of transducers is used for both the proposed and the triangulation method. It is demonstrated that the proposed method is able to localize multiple events occurring closely in time. Furthermore, the matching pursuit algorithm and the basis pursuit densoising approach are each evaluated as potential numerical tools in the proposed sparse reconstruction method.

Multi-Scale Transport Properties of Fine-Grained Rocks: A Case Study of the Kirtland Formation, San Juan Basin, USA

NASA Astrophysics Data System (ADS)

Heath, J. E.; Dewers, T. A.; McPherson, B. J.; Wilson, T. H.; Flach, T.

2009-12-01

Understanding and characterizing transport properties of fine-grained rocks is critical in development of shale gas plays or assessing retention of CO2 at geologic storage sites. Difficulties arise in that both small scale (i.e., ~ nm) properties of the rock matrix and much larger scale fractures, faults, and sedimentological architecture govern migration of multiphase fluids. We present a multi-scale investigation of sealing and transport properties of the Kirtland Formation, which is a regional aquitard and reservoir seal in the San Juan Basin, USA. Sub-micron dual FIB/SEM imaging and reconstruction of 3D pore networks in core samples reveal a variety of pore types, including slit-shaped pores that are co-located with sedimentary structures and variations in mineralogy. Micron-scale chemical analysis and XRD reveal a mixture of mixed-layer smectite/illite, chlorite, quartz, and feldspar with little organic matter. Analysis of sub-micron digital reconstructions, mercury capillary injection pressure, and gas breakthrough measurements indicate a high quality sealing matrix. Natural full and partially mineralized fractures observed in core and in FMI logs include those formed from early soil-forming processes, differential compaction, and tectonic events. The potential impact of both fracture and matrix properties on large-scale transport is investigated through an analysis of natural helium from core samples, 3D seismic data and poro-elastic modeling. While seismic interpretations suggest considerable fracturing of the Kirtland, large continuous fracture zones and faults extending through the seal to the surface cannot be inferred from the data. Observed Kirtland Formation multi-scale transport properties are included as part of a risk assessment methodology for CO2 storage. Acknowledgements: The authors gratefully acknowledge the U.S. Department of Energy’s (DOE) National Energy Technology Laboratory for sponsoring this project. The DOE’s Basic Energy Science Office funded the dual FIB/SEM analysis. The Kirtland Formation overlies the coal seams of the Fruitland into which CO2 has been injected as a Phase II demonstration of the Southwest Regional Partnership on Carbon Sequestration. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the U.S. Department of Energy under contract DE-ACOC4-94AL85000.

Reconstruction of large upper eyelid defects with a free tarsal plate graft and a myocutaneous pedicle flap plus a free skin graft.

PubMed

Toft, Peter B

2016-01-01

To review and present the results of a one-step method employing a free tarsal plate graft and a myocutaneous pedicle flap plus a free skin graft for reconstruction of large upper eyelid defects after tumour surgery. This was a retrospective case-series of 8 patients who underwent reconstruction of the upper eyelid after tumour removal. The horizontal defect involved 50-75% of the lid (3 pts.), more than 75% (3 pts.), and more than 75% plus the lateral canthus (2 pts.). The posterior lamella was reconstructed with contralateral upper eyelid tarsal plate. The anterior lamella was reconstructed with a laterally based myocutaneous pedicle flap in 7 patients, leaving a raw surface under the brow which was covered with a free skin graft. In 1 patient with little skin left under the brow, the anterior lamella was reconstructed with a bi-pedicle orbicularis muscle flap together with a free skin graft. All patients healed without necrosis, did not suffer from lagophthalmos, achieved reasonable cosmesis, and did not need lubricants. In one patient, a contact lens was necessary for three weeks because of corneal erosion. One patient still needs a contact lens 3 months after excision to avoid eye discomfort. Large upper eyelid defects can be reconstructed with a free tarsal plate graft and a laterally based myocutaneous pedicle flap in combination with a free skin graft. Two-step procedures can probably be avoided in most cases.

Learnings from Opportunistic Wetlands: The Role of Substrate and Landscape Position on Reconstructed Landforms in a Sub-humid Climate

NASA Astrophysics Data System (ADS)

Little-Devito, M.; Chasmer, L.; Devito, K.; Kettridge, N.; Lukenbach, M. C.; Mendoza, C. A.

2017-12-01

Wetlands are important features in large-scale reclamation projects, and are integral to sustaining landscape eco-hydrological function and meeting reclamation goals. Despite a sub-humid climate, opportunistic wetlands are appearing on reconstructed landforms, and present an opportunity to understand the requirements for wetland construction, relative wetland succession, and their role in functioning landscapes. The relative importance and relationship between local and landscape-scale factors in determining initial wetland formation, as well as the relative occurrence and wetland type found on newly reclaimed landscapes was studied using both field and active (LiDAR) remote sensing methods. A random transect survey approach was used to characterize vegetation communities, soil and hydrologic characteristics, and local and landscape physiographic position across reconstructed landforms. Transects were also used to validate a broader area LiDAR-based classification. Preliminary findings suggest a higher frequency of opportunistic wetlands than anticipated. Soil texture of constructed landforms was important in determining the significance of local and landscape factors. On fine-textured constructed landforms, regardless of landscape position, wetlands formed on flat areas and in shallow depressions where soils had low water storage that promoted frequent surface saturation. Wetlands were less frequent on coarse-textured landforms and their location was controlled by landscape-scale factors, being restricted to the toes of slopes and areas intersecting the groundwater table. Wetlands found across all material types were predominantly Salix sp. and Carex sp. swamps with Typha sp. marsh complexes. This may indicate a potential initial phase of wetland succession and paludification in the Boreal Plains. These findings have important implications for understanding general wetland development, the initial phase of wetland paludification, and will aid the development of a geomorphic framework to better inform wetland construction and promote sustainable forest-wetland complexes similar to those found in natural landscapes.

A Feature-adaptive Subdivision Method for Real-time 3D Reconstruction of Repeated Topology Surfaces

NASA Astrophysics Data System (ADS)

Lin, Jinhua; Wang, Yanjie; Sun, Honghai

2017-03-01

It's well known that rendering for a large number of triangles with GPU hardware tessellation has made great progress. However, due to the fixed nature of GPU pipeline, many off-line methods that perform well can not meet the on-line requirements. In this paper, an optimized Feature-adaptive subdivision method is proposed, which is more suitable for reconstructing surfaces with repeated cusps or creases. An Octree primitive is established in irregular regions where there are the same sharp vertices or creases, this method can find the neighbor geometry information quickly. Because of having the same topology structure between Octree primitive and feature region, the Octree feature points can match the arbitrary vertices in feature region more precisely. In the meanwhile, the patches is re-encoded in the Octree primitive by using the breadth-first strategy, resulting in a meta-table which allows for real-time reconstruction by GPU hardware tessellation unit. There is only one feature region needed to be calculated under Octree primitive, other regions with the same repeated feature generate their own meta-table directly, the reconstruction time is saved greatly for this step. With regard to the meshes having a large number of repeated topology feature, our algorithm improves the subdivision time by 17.575% and increases the average frame drawing time by 0.2373 ms compared to the traditional FAS (Feature-adaptive Subdivision), at the same time the model can be reconstructed in a watertight manner.

To the horizon and beyond: Weak lensing of the CMB and binary inspirals into horizonless objects

NASA Astrophysics Data System (ADS)

Kesden, Michael

This thesis examines two predictions of general relativity: weak lensing and gravitational waves. The cosmic microwave background (CMB) is gravitationally lensed by the large-scale structure between the observer and the last- scattering surface. This weak lensing induces non-Gaussian correlations that can be used to construct estimators for the deflection field. The error and bias of these estimators are derived and used to analyze the viability of lensing reconstruction for future CMB experiments. Weak lensing also affects the one-point probability distribution function of the CMB. The skewness and kurtosis induced by lensing and the Sunayev- Zel'dovich (SZ) effect are calculated as functions of the angular smoothing scale of the map. While these functions offer the advantage of easy computability, only the skewness from lensing-SZ correlations can potentially be detected, even in the limit of the largest amplitude fluctuations allowed by observation. Lensing estimators are also essential to constrain inflation, the favored explanation for large-scale isotropy and the origin of primordial perturbations. B-mode polarization is considered to be a "smoking-gun" signature of inflation, and lensing estimators can be used to recover primordial B-modes from lensing-induced contamination. The ability of future CMB experiments to constrain inflation is assessed as functions of survey size and instrumental sensitivity. A final application of lensing estimators is to constrain a possible cutoff in primordial density perturbations on near-horizon scales. The paucity of independent modes on such scales limits the statistical certainty of such a constraint. Measurements of the deflection field can be used to constrain at the 3s level the existence of a cutoff large enough to account for current CMB observations. A final chapter of this thesis considers an independent topic: the gravitational-wave (GW) signature of a binary inspiral into a horizonless object. If the supermassive objects at galactic centers lack the horizons of traditional black holes, inspiraling objects could emit GWs after passing within their surfaces. The GWs produced by such an inspiral are calculated, revealing distinctive features potentially observable by future GW observatories.

Characterization and extraction of the synaptic apposition surface for synaptic geometry analysis

PubMed Central

Morales, Juan; Rodríguez, Angel; Rodríguez, José-Rodrigo; DeFelipe, Javier; Merchán-Pérez, Angel

2013-01-01

Geometrical features of chemical synapses are relevant to their function. Two critical components of the synaptic junction are the active zone (AZ) and the postsynaptic density (PSD), as they are related to the probability of synaptic release and the number of postsynaptic receptors, respectively. Morphological studies of these structures are greatly facilitated by the use of recent electron microscopy techniques, such as combined focused ion beam milling and scanning electron microscopy (FIB/SEM), and software tools that permit reconstruction of large numbers of synapses in three dimensions. Since the AZ and the PSD are in close apposition and have a similar surface area, they can be represented by a single surface—the synaptic apposition surface (SAS). We have developed an efficient computational technique to automatically extract this surface from synaptic junctions that have previously been three-dimensionally reconstructed from actual tissue samples imaged by automated FIB/SEM. Given its relationship with the release probability and the number of postsynaptic receptors, the surface area of the SAS is a functionally relevant measure of the size of a synapse that can complement other geometrical features like the volume of the reconstructed synaptic junction, the equivalent ellipsoid size and the Feret's diameter. PMID:23847474

Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets

PubMed Central

Kotera, Masaaki; Tabei, Yasuo; Yamanishi, Yoshihiro; Tokimatsu, Toshiaki; Goto, Susumu

2013-01-01

Motivation: The metabolic pathway is an important biochemical reaction network involving enzymatic reactions among chemical compounds. However, it is assumed that a large number of metabolic pathways remain unknown, and many reactions are still missing even in known pathways. Therefore, the most important challenge in metabolomics is the automated de novo reconstruction of metabolic pathways, which includes the elucidation of previously unknown reactions to bridge the metabolic gaps. Results: In this article, we develop a novel method to reconstruct metabolic pathways from a large compound set in the reaction-filling framework. We define feature vectors representing the chemical transformation patterns of compound–compound pairs in enzymatic reactions using chemical fingerprints. We apply a sparsity-induced classifier to learn what we refer to as ‘enzymatic-reaction likeness’, i.e. whether compound pairs are possibly converted to each other by enzymatic reactions. The originality of our method lies in the search for potential reactions among many compounds at a time, in the extraction of reaction-related chemical transformation patterns and in the large-scale applicability owing to the computational efficiency. In the results, we demonstrate the usefulness of our proposed method on the de novo reconstruction of 134 metabolic pathways in Kyoto Encyclopedia of Genes and Genomes (KEGG). Our comprehensively predicted reaction networks of 15 698 compounds enable us to suggest many potential pathways and to increase research productivity in metabolomics. Availability: Softwares are available on request. Supplementary material are available at http://web.kuicr.kyoto-u.ac.jp/supp/kot/ismb2013/. Contact: goto@kuicr.kyoto-u.ac.jp PMID:23812977

The role of place-exchange, dislocations and substrate symmetry in nickel/gold(111) heteroepitaxy

NASA Astrophysics Data System (ADS)

Cullen, William Grady

1999-12-01

The epitaxial growth of Ni on Au(111) in ultrahigh vacuum was investigated using scanning tunneling microscopy (STM) and Auger electron spectroscopy (AES). Films in the coverage range 0--2 monolayers were studied. The goals were to investigate the influence of the substrate reconstruction on the morphology of the growing film and also the possibility of intermixing between Ni and Au. Deposition of Ni at room temperature led to the growth of two-dimensional islands which nucleate at the point dislocations of the Au(111) herringbone reconstruction, as found in previous studies. Anisotropic growth features were identified and shown to result from basic symmetry properties of the Au(111) reconstruction. In addition, significant internal structure was observed within the islands, indicating that the islands are of mixed composition, and that the overlayer is not pseudomorphic. Two-dimensional island ripening was observed after deposition of Ni at room temperature, followed by moderate annealing. Results of STM and AES experiments indicate that the mass transport during ripening is due to mobile Au atoms which have detached from the original islands. Deposition at high temperature was shown to result in the formation of large epitaxial Au islands due to Ni-Au place exchange and subsequent collision-mediated nucleation of Au atoms. Island size distributions were analyzed for comparison with scaling theories, and data collapse onto a common curve was observed at different coverages and temperatures. Based on the scaling analysis, a critical nucleus of i = 2 was inferred. The annealing and high-temperature deposition experiments demonstrated that a Ni monolayer is metastable at the Au(111) surface, i.e. Au tends to segregate and cover the Ni.

Magnetic Doppler imaging considering atmospheric structure modifications due to local abundances: a luxury or a necessity?

NASA Astrophysics Data System (ADS)

Kochukhov, O.; Wade, G. A.; Shulyak, D.

2012-04-01

Magnetic Doppler imaging is currently the most powerful method of interpreting high-resolution spectropolarimetric observations of stars. This technique has provided the very first maps of stellar magnetic field topologies reconstructed from time series of full Stokes vector spectra, revealing the presence of small-scale magnetic fields on the surfaces of Ap stars. These studies were recently criticised by Stift et al., who claimed that magnetic inversions are not robust and are seriously undermined by neglecting a feedback on the Stokes line profiles from the local atmospheric structure in the regions of enhanced metal abundance. We show that Stift et al. misinterpreted published magnetic Doppler imaging results and consistently neglected some of the most fundamental principles behind magnetic mapping. Using state-of-the-art opacity sampling model atmosphere and polarized radiative transfer codes, we demonstrate that the variation of atmospheric structure across the surface of a star with chemical spots affects the local continuum intensity but is negligible for the normalized local Stokes profiles except for the rare situation of a very strong line in an extremely Fe-rich atmosphere. For the disc-integrated spectra of an Ap star with extreme abundance variations, we find that the assumption of a mean model atmosphere leads to moderate errors in Stokes I but is negligible for the circular and linear polarization spectra. Employing a new magnetic inversion code, which incorporates the horizontal variation of atmospheric structure induced by chemical spots, we reconstructed new maps of magnetic field and Fe abundance for the bright Ap star α2 CVn. The resulting distribution of chemical spots changes insignificantly compared to the previous modelling based on a single model atmosphere, while the magnetic field geometry does not change at all. This shows that the assertions by Stift et al. are exaggerated as a consequence of unreasonable assumptions and extrapolations, as well as methodological flaws and inconsistencies of their analysis. Our discussion proves that published magnetic inversions based on a mean stellar atmosphere are highly robust and reliable, and that the presence of small-scale magnetic field structures on the surfaces of Ap stars is indeed real. Incorporating horizontal variations of atmospheric structure in Doppler imaging can marginally improve reconstruction of abundance distributions for stars showing very large iron overabundances. But this costly technique is unnecessary for magnetic mapping with high-resolution polarization spectra.

Reconstruction of solar spectral surface UV irradiances using radiative transfer simulations.

PubMed

Lindfors, Anders; Heikkilä, Anu; Kaurola, Jussi; Koskela, Tapani; Lakkala, Kaisa

2009-01-01

UV radiation exerts several effects concerning life on Earth, and spectral information on the prevailing UV radiation conditions is needed in order to study each of these effects. In this paper, we present a method for reconstruction of solar spectral UV irradiances at the Earth's surface. The method, which is a further development of an earlier published method for reconstruction of erythemally weighted UV, relies on radiative transfer simulations, and takes as input (1) the effective cloud optical depth as inferred from pyranometer measurements of global radiation (300-3000 nm); (2) the total ozone column; (3) the surface albedo as estimated from measurements of snow depth; (4) the total water vapor column; and (5) the altitude of the location. Reconstructed daily cumulative spectral irradiances at Jokioinen and Sodankylä in Finland are, in general, in good agreement with measurements. The mean percentage difference, for instance, is mostly within +/-8%, and the root mean square of the percentage difference is around 10% or below for wavelengths over 310 nm and daily minimum solar zenith angles (SZA) less than 70 degrees . In this study, we used pseudospherical radiative transfer simulations, which were shown to improve the performance of our method under large SZA (low Sun).

Five centuries of Southern Moravian drought variations revealed from living and historic tree rings

NASA Astrophysics Data System (ADS)

Büntgen, Ulf; Brázdil, Rudolf; Dobrovolný, Petr; Trnka, Mirek; Kyncl, Tomáš

2011-08-01

Past, present, and projected fluctuations of the hydrological cycle, associated to anthropogenic climate change, describe a pending challenge for natural ecosystems and human civilizations. Here, we compile and analyze long meteorological records from Brno, Czech Republic and nearby tree-ring measurements of living and historic firs from Southern Moravia. This unique paleoclimatic compilation together with innovative reconstruction methods and error estimates allows regional-scale May-June drought variability to be estimated back to ad 1500. Driest and wettest conditions occurred in 1653 and 1713, respectively. The ten wettest decades are evenly distributed throughout time, whereas the driest episodes occurred in the seventeenth century and from the 1840s onward. Discussion emphasizes agreement between the new reconstruction and documentary evidence, and stresses possible sources of reconstruction uncertainty including station inhomogeneity, limited frequency preservation, reduced climate sensitivity, and large-scale constraints.

Erosion during extreme flood events dominates Holocene canyon evolution in northeast Iceland.

PubMed

Baynes, Edwin R C; Attal, Mikaël; Niedermann, Samuel; Kirstein, Linda A; Dugmore, Andrew J; Naylor, Mark

2015-02-24

Extreme flood events have the potential to cause catastrophic landscape change in short periods of time (10(0) to 10(3) h). However, their impacts are rarely considered in studies of long-term landscape evolution (>10(3) y), because the mechanisms of erosion during such floods are poorly constrained. Here we use topographic analysis and cosmogenic (3)He surface exposure dating of fluvially sculpted surfaces to determine the impact of extreme flood events within the Jökulsárgljúfur canyon (northeast Iceland) and to constrain the mechanisms of bedrock erosion during these events. Surface exposure ages allow identification of three periods of intense canyon cutting about 9 ka ago, 5 ka ago, and 2 ka ago during which multiple large knickpoints retreated large distances (>2 km). During these events, a threshold flow depth was exceeded, leading to the toppling and transportation of basalt lava columns. Despite continuing and comparatively large-scale (500 m(3)/s) discharge of sediment-rich glacial meltwater, there is no evidence for a transition to an abrasion-dominated erosion regime since the last erosive event because the vertical knickpoints have not diffused over time. We provide a model for the evolution of the Jökulsárgljúfur canyon through the reconstruction of the river profile and canyon morphology at different stages over the last 9 ka and highlight the dominant role played by extreme flood events in the shaping of this landscape during the Holocene.

Erosion during extreme flood events dominates Holocene canyon evolution in northeast Iceland

PubMed Central

Baynes, Edwin R. C.; Attal, Mikaël; Kirstein, Linda A.; Dugmore, Andrew J.; Naylor, Mark

2015-01-01

Extreme flood events have the potential to cause catastrophic landscape change in short periods of time (100 to 103 h). However, their impacts are rarely considered in studies of long-term landscape evolution (>103 y), because the mechanisms of erosion during such floods are poorly constrained. Here we use topographic analysis and cosmogenic 3He surface exposure dating of fluvially sculpted surfaces to determine the impact of extreme flood events within the Jökulsárgljúfur canyon (northeast Iceland) and to constrain the mechanisms of bedrock erosion during these events. Surface exposure ages allow identification of three periods of intense canyon cutting about 9 ka ago, 5 ka ago, and 2 ka ago during which multiple large knickpoints retreated large distances (>2 km). During these events, a threshold flow depth was exceeded, leading to the toppling and transportation of basalt lava columns. Despite continuing and comparatively large-scale (500 m3/s) discharge of sediment-rich glacial meltwater, there is no evidence for a transition to an abrasion-dominated erosion regime since the last erosive event because the vertical knickpoints have not diffused over time. We provide a model for the evolution of the Jökulsárgljúfur canyon through the reconstruction of the river profile and canyon morphology at different stages over the last 9 ka and highlight the dominant role played by extreme flood events in the shaping of this landscape during the Holocene. PMID:25675484

Manifestations of the MHD and kinetic dynamo through soft x-rays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chartas, G.A.

1991-08-01

The underlying mechanisms that produce and sustain the reversed toroidal field in RFP's are investigated by analyzing 2Dx-ray emissivity reconstruction and by correlating the evolution of the hot electron properties to the reversed toroidal magnetic field. Reconnection of emissivity surfaces as seen in soft x-ray (SXR) reconstructing occur near the predicted resonant surface for the m=1, n=5, 6,-7 resistive tearing modes. Two distinct rates of reversed magnetic field generation are observed. First, in the MHD relaxation phase a sudden increase in B{sub t}(a) is detected. This event coincides with a large increase in the edge hot electron current density. Themore » second mode of flux generation is observed t have a slower rate and occurs during the diffusion phase. A variation of the edge hot electron current density by a factor of four produced only a small change in the measured B{sub t}(a), implying the contributions of the hot electrons to the dynamo during the diffusion phase is small. {tilde T}{sub e}, / was measured to be approximately 60%, which is much larger than the corresponding quantity for the bulk component which is about 30%. Scaling of the magnetic Reynolds number with the diffusion and MHD relaxation time, {tau}{sub MHD} indicated that the {tau}{sub MHD} does not have a strong dependence on the Spitzer resistivity whereas the diffusion time does depend on the classical resistivity. SXR emission mode analysis during the transition from a rotating to a locked plasma shows a decrease in the m=1 Fourier Bastille component of the emissivity. This is due to the flattening of the emissivity profile as seen in the SXR reconstructions.« less

3D Scene Reconstruction Using Omnidirectional Vision and LiDAR: A Hybrid Approach

PubMed Central

Vlaminck, Michiel; Luong, Hiep; Goeman, Werner; Philips, Wilfried

2016-01-01

In this paper, we propose a novel approach to obtain accurate 3D reconstructions of large-scale environments by means of a mobile acquisition platform. The system incorporates a Velodyne LiDAR scanner, as well as a Point Grey Ladybug panoramic camera system. It was designed with genericity in mind, and hence, it does not make any assumption about the scene or about the sensor set-up. The main novelty of this work is that the proposed LiDAR mapping approach deals explicitly with the inhomogeneous density of point clouds produced by LiDAR scanners. To this end, we keep track of a global 3D map of the environment, which is continuously improved and refined by means of a surface reconstruction technique. Moreover, we perform surface analysis on consecutive generated point clouds in order to assure a perfect alignment with the global 3D map. In order to cope with drift, the system incorporates loop closure by determining the pose error and propagating it back in the pose graph. Our algorithm was exhaustively tested on data captured at a conference building, a university campus and an industrial site of a chemical company. Experiments demonstrate that it is capable of generating highly accurate 3D maps in very challenging environments. We can state that the average distance of corresponding point pairs between the ground truth and estimated point cloud approximates one centimeter for an area covering approximately 4000 m2. To prove the genericity of the system, it was tested on the well-known Kitti vision benchmark. The results show that our approach competes with state of the art methods without making any additional assumptions. PMID:27854315

Deep ocean ventilation in the Central Fram Strait during the past 35 kyr

NASA Astrophysics Data System (ADS)

Ezat, M.; Rasmussen, T. L.; Skinner, L.; Zamelczyk, K.

2017-12-01

Ocean ventilation in the Arctic Mediterranean via transformation of northward inflowing warm Atlantic surface water into cold deep water affects regional climate, large-scale atmospheric circulation and carbon storage in the deep ocean. Radiocarbon dating of benthic foraminifera has been used to suggest a near-cessation of Arctic Ocean ventilation during the Last Glacial Maximum. During the last deglaciation episodic surges of this Arctic `aged' glacial deep water into the Nordic Seas and the subpolar North Atlantic Ocean may have occurred (Thornalley et al., 2011, 2015; Science). A recent study from the SE Norwegian Sea and the Iceland Basin has revealed large radiocarbon age differences between different benthic foraminiferal species during the last deglaciation (Ezat et al., 2017; Paleoceanography), which arguments for a re-evaluation of previous bottom-water radiocarbon ventilation age reconstructions from the region. Here, we present new species-specific benthic and planktic foraminiferal radiocarbon dates from the central Fram Strait and the SE Norwegian Sea for the past 35 kyr. Several lines of evidence in this new dataset demonstrate that the previously suggested `extreme aging' of >6000 14C years in the Arctic Mediterranean is most likely erroneous. In addition, benthic-planktic age offsets in the deep central Fram Strait display a remarkable decrease from 1300-2300 14C years in late Marine Isotope Stage (MIS) 3 to 0-500 14C year in MIS 2, which correlates with a decrease in benthic d13C and reduction in the benthic-planktic d18O gradient. We are in the process of compiling/screening published ventilation age reconstructions from the Arctic Mediterranean and the subpolar North Atlantic in the light of our new results in order to establish a basin-scale evolution of ocean ventilation since late MIS 3 in this region.

Palinspastic reconstruction of structure maps: an automated finite element approach with heterogeneous strain

NASA Astrophysics Data System (ADS)

Dunbar, John A.; Cook, Richard W.

2003-07-01

Existing methods for the palinspastic reconstruction of structure maps do not adequately account for heterogeneous rock strain and hence cannot accurately treat features such as fault terminations and non-cylindrical folds. We propose a new finite element formulation of the map reconstruction problem that treats such features explicitly. In this approach, a model of the map surface, with internal openings that honor the topology of the fault-gap network, is constructed of triangular finite elements. Both model building and reconstruction algorithms are guided by rules relating fault-gap topology to the kinematics of fault motion and are fully automated. We represent the total strain as the sum of a prescribed component of locally homogeneous simple shear and a minimum amount of heterogeneous residual strain. The region within which a particular orientation of simple shear is treated as homogenous can be as small as an individual element or as large as the entire map. For residual strain calculations, we treat the map surface as a hyperelastic membrane. A globally optimum reconstruction is found that unfolds the map while faithfully honoring assigned strain mechanisms, closes fault gaps without overlap or gap and imparts the least possible residual strain in the restored surface. The amount and distribution of the residual strain serves as a diagnostic tool for identifying mapping errors. The method can be used to reconstruct maps offset by any number of faults that terminate, branch and offset each other in arbitrarily complex ways.

Lipid biomarkers in surface sediments from the Gulf of Genoa (Ligurian Sea) and their potential for palaeo-environmental reconstructions

NASA Astrophysics Data System (ADS)

Ruggieri, Nicoletta; Kaiser, Jérôme; Arz, Helge W.; Hefter, Jens; Siegel, Herbert; Mollenhauer, Gesine; Lamy, Frank

2014-05-01

A series of molecular organic markers were determined in surface sediments from the Gulf of Genoa (Ligurian Sea) in order to evaluate their potential for palaeo-environmental reconstructions. The interest for the Gulf of Genoa lies in its contrasting coastal and central areas in terms of terrestrial input, oligotrophy, primary production and surface temperature gradient. Moreover, the Gulf of Genoa contains a large potential for climate reconstruction as it is one of the four major Mediterranean centres for cyclogenesis and the ultra high sedimentation rates on the shelf make this area suitable for high resolution environmental reconstruction. Initial results from sediment cores in the coastal area indeed reveal the potential for Holocene environmental reconstruction on up to decadal timescales (see Poster "Reconstruction of late Holocene flooding events in the Gulf of Genoa, Ligurian Sea" by Lamy et al.). During R/V Poseidon cruise P413 (May 2011), ca. 60 sediment cores were taken along the Ligurian shelf, continental slope, and in the basin between off Livorno and the French border. Results based on surface sediments suggest that some biomarker-based proxies are well-suited to reconstruct sea surface temperature (SST), the input of terrestrial organic material (TOM), and marine primary productivity (PP). The estimated UK'37 SST reflects very closely the autumnal mean satellite-based SST distribution, while TEXH86 SSTs correspond to summer SST at offshore sites and to winter SST for the nearshore sites. Using both SST proxies together may thus allow reconstructing past seasonality changes. Proxies for TOM input (terrestrial n-alkane and n-alkanol concentrations, BIT index) have higher values close to the major river mouths and decrease offshore suggesting that these may be used as proxy for the variability in TOM input by runoff. Interestingly, high n-alkane average chain length in the most offshore sites may result from aeolian input from northern Africa. Finally, high concentrations of crenarchaeol and isoprenoid GDGTs in the open basin illustrate the preference of Thaumarchaeota for oligotrophic waters. This study represents a major prerequisite for the future application of lipid biomarkers on sediment cores from the Gulf of Genoa.

Quantitative Estimation of Land Surface Characteristic Parameters and Actual Evapotranspiration in the Nagqu River Basin over the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhong, L.; Ma, Y.; Ma, W.; Zou, M.; Hu, Y.

2016-12-01

Actual evapotranspiration (ETa) is an important component of the water cycle in the Tibetan Plateau. It is controlled by many hydrological and meteorological factors. Therefore, it is of great significance to estimate ETa accurately and continuously. It is also drawing much attention of scientific community to understand land surface parameters and land-atmosphere water exchange processes in small watershed-scale areas. Based on in-situ meteorological data in the Nagqu river basin and surrounding regions, the main meteorological factors affecting the evaporation process were quantitatively analyzed and the point-scale ETa estimation models in the study area were successfully built. On the other hand, multi-source satellite data (such as SPOT, MODIS, FY-2C) were used to derive the surface characteristics in the river basin. A time series processing technique was applied to remove cloud cover and reconstruct data series. Then improved land surface albedo, improved downward shortwave radiation flux and reconstructed normalized difference vegetation index (NDVI) were coupled into the topographical enhanced surface energy balance system to estimate ETa. The model-estimated results were compared with those ETa values determined by combinatory method. The results indicated that the model-estimated ETa agreed well with in-situ measurements with correlation coefficient, mean bias error and root mean square error of 0.836, 0.087 and 0.140 mm/h respectively.

Evidence for subduction in the ice shell of Europa

NASA Astrophysics Data System (ADS)

Kattenhorn, Simon A.; Prockter, Louise M.

2014-10-01

Jupiter’s icy moon Europa has one of the youngest planetary surfaces in the Solar System, implying rapid recycling by some mechanism. Despite ubiquitous extension and creation of new surface area at dilational bands that resemble terrestrial mid-ocean spreading zones, there is little evidence of large-scale contraction to balance the observed extension or to recycle ageing terrains. We address this enigma by presenting several lines of evidence that subduction may be recycling surface material into the interior of Europa’s ice shell. Using Galileo spacecraft images, we produce a tectonic reconstruction of geologic features across a 134,000 km2 region of Europa and find, in addition to dilational band spreading, evidence for transform motions along prominent strike-slip faults, as well as the removal of approximately 20,000 km2 of the surface along a discrete tabular zone. We interpret this zone as a subduction-like convergent boundary that abruptly truncates older geological features and is flanked by potential cryolavas on the overriding ice. We propose that Europa’s ice shell has a brittle, mobile, plate-like system above convecting warmer ice. Hence, Europa may be the only Solar System body other than Earth to exhibit a system of plate tectonics.

Experimental Reconstructions of Surface Temperature using the PAGES 2k Network

NASA Astrophysics Data System (ADS)

Wang, Jianghao; Emile-Geay, Julien; Vaccaro, Adam; Guillot, Dominique; Rajaratnam, Bala

2014-05-01

Climate field reconstructions (CFRs) of the Common Era provide uniquely detailed characterizations of natural, low-frequency climate variability beyond the instrumental era. However, the accuracy and robustness of global-scale CFRs remains an open question. For instance, Wang et al. (2013) showed that CFRs are greatly method-dependent, highlighting the danger of forming dynamical interpretations based on a single reconstruction (e.g. Mann et al., 2009). This study will present a set of new reconstructions of global surface temperature and compare them with existing reconstructions from the IPCC AR5. The reconstructions are derived using the PAGES 2k network, which is composed of 501 high-resolution temperature-sensitive proxies from eight continental-scale regions (PAGES2K Consortium, 2013). Four CFR techniques are used to produce reconstructions, including RegEM-TTLS, the Mann et al. (2009) implementation of RegEM-TTLS (hereinafter M09-TTLS), CCA (Smerdon et al., 2010) and GraphEM (Guillot et al., submitted). First, we show that CFRs derived from the PAGES 2k network exhibit greater inter-method similarities than the same methods applied to the proxy network of Mann et al. (2009) (hereinafter M09 network). For instance, reconstructed NH mean temperature series using the PAGES 2k network are in better agreement over the last millennium than the M09-based reconstructions. Remarkably, for the reconstructed temperature difference between the Medieval Climate Anomaly and the Little Ice Age, the spatial patterns of the M09-based reconstructions are greatly divergent amongst methods. On the other hand, not a single PAGES 2k-based CFR displays the La Niña-like pattern found in Mann et al. (2009); rather, no systematic pattern emerges between the two epochs. Next, we quantify uncertainties associated with the PAGES 2k-based CFRs via ensemble methods, and show that GraphEM and CCA are less sensitive to random noise than RegEM-TTLS and M09-TTLS, consistent with pseudoproxy studies (Wang et al., 2014). The updated set of reconstructions, with uncertainties, will provide a broader context for the evaluation of the unusual character of the 20th century warming. The reconstructions will also be used to constrain fingerprinting analyses, which is particularly useful in discriminating between externally forced signals and internal variability. Reference: Guillot, D., B. Rajaratnam, and J. Emile-Geay, Statistical paleoclimate reconstructions via markov random fields, Ann. Appl. Stat., submitted. Mann, M. E., Z. Zhang, S. Rutherford, R. S. Bradley, M. K. Hughes, D. Shindell, C. Ammann, G. Faluvegi, and F. Ni, Global signatures and dynamical origins of the little ice age and medieval climate anomaly, Science, 326 (5957), 1256-1260, 2009. PAGES2K Consortium, Continental-scale temperature variability during the past two millennia, Nature Geosci, 6(5), 339-346, 2013. Smerdon, J. E., A. Kaplan, D. Chang, and M. N. Evans, A pseudoproxy evaluation of the CCA and RegEM methods for reconstructing climate fields of the last millennium*, J. Clim., 23(18), 4856-4880, 2010. Wang, J., J. Emile-Geay, A. D. Vaccaro, and D. Guillot, Fragility of estimated spatial temperature patterns in climate field reconstructions of the Common Era, Abstract PP41B-03 presented at Fall Meeting, AGU, San Francisco, Calif., 2013. Wang, J., J. Emile-Geay, D. Guillot, J. Smerdon, and B. Rajaratnam, Evaluating climate field reconstruction techniques using improved emulations of real-world conditions, Clim.Past, 10(1), 1-19, 2014.

Coralline algal Barium as indicator for 20th century northwestern North Atlantic surface ocean freshwater variability

PubMed Central

Hetzinger, S.; Halfar, J.; Zack, T.; Mecking, J. V.; Kunz, B. E.; Jacob, D. E.; Adey, W. H.

2013-01-01

During the past decades climate and freshwater dynamics in the northwestern North Atlantic have undergone major changes. Large-scale freshening episodes, related to polar freshwater pulses, have had a strong influence on ocean variability in this climatically important region. However, little is known about variability before 1950, mainly due to the lack of long-term high-resolution marine proxy archives. Here we present the first multidecadal-length records of annually resolved Ba/Ca variations from Northwest Atlantic coralline algae. We observe positive relationships between algal Ba/Ca ratios from two Newfoundland sites and salinity observations back to 1950. Both records capture episodical multi-year freshening events during the 20th century. Variability in algal Ba/Ca is sensitive to freshwater-induced changes in upper ocean stratification, which affect the transport of cold, Ba-enriched deep waters onto the shelf (highly stratified equals less Ba/Ca). Algal Ba/Ca ratios therefore may serve as a new resource for reconstructing past surface ocean freshwater changes. PMID:23636135

Coralline algal barium as indicator for 20th century northwestern North Atlantic surface ocean freshwater variability.

PubMed

Hetzinger, S; Halfar, J; Zack, T; Mecking, J V; Kunz, B E; Jacob, D E; Adey, W H

2013-01-01

During the past decades climate and freshwater dynamics in the northwestern North Atlantic have undergone major changes. Large-scale freshening episodes, related to polar freshwater pulses, have had a strong influence on ocean variability in this climatically important region. However, little is known about variability before 1950, mainly due to the lack of long-term high-resolution marine proxy archives. Here we present the first multidecadal-length records of annually resolved Ba/Ca variations from Northwest Atlantic coralline algae. We observe positive relationships between algal Ba/Ca ratios from two Newfoundland sites and salinity observations back to 1950. Both records capture episodical multi-year freshening events during the 20th century. Variability in algal Ba/Ca is sensitive to freshwater-induced changes in upper ocean stratification, which affect the transport of cold, Ba-enriched deep waters onto the shelf (highly stratified equals less Ba/Ca). Algal Ba/Ca ratios therefore may serve as a new resource for reconstructing past surface ocean freshwater changes.

Quantum Degeneracy in Atomic Point Contacts Revealed by Chemical Force and Conductance

NASA Astrophysics Data System (ADS)

Sugimoto, Yoshiaki; Ondráček, Martin; Abe, Masayuki; Pou, Pablo; Morita, Seizo; Perez, Ruben; Flores, Fernando; Jelínek, Pavel

2013-09-01

Quantum degeneracy is an important concept in quantum mechanics with large implications to many processes in condensed matter. Here, we show the consequences of electron energy level degeneracy on the conductance and the chemical force between two bodies at the atomic scale. We propose a novel way in which a scanning probe microscope can detect the presence of degenerate states in atomic-sized contacts even at room temperature. The tunneling conductance G and chemical binding force F between two bodies both tend to decay exponentially with distance in a certain distance range, usually maintaining direct proportionality G∝F. However, we show that a square relation G∝F2 arises as a consequence of quantum degeneracy between the interacting frontier states of the scanning tip and a surface atom. We demonstrate this phenomenon on the Si(111)-(7×7) surface reconstruction where the Si adatom possesses a strongly localized dangling-bond state at the Fermi level.

Rapid Holocene thinning of an East Antarctic outlet glacier driven by marine ice sheet instability

PubMed Central

Jones, R. S.; Mackintosh, A. N.; Norton, K. P.; Golledge, N. R.; Fogwill, C. J.; Kubik, P. W.; Christl, M.; Greenwood, S. L.

2015-01-01

Outlet glaciers grounded on a bed that deepens inland and extends below sea level are potentially vulnerable to ‘marine ice sheet instability'. This instability, which may lead to runaway ice loss, has been simulated in models, but its consequences have not been directly observed in geological records. Here we provide new surface-exposure ages from an outlet of the East Antarctic Ice Sheet that reveal rapid glacier thinning occurred approximately 7,000 years ago, in the absence of large environmental changes. Glacier thinning persisted for more than two and a half centuries, resulting in hundreds of metres of ice loss. Numerical simulations indicate that ice surface drawdown accelerated when the otherwise steadily retreating glacier encountered a bedrock trough. Together, the geological reconstruction and numerical simulations suggest that centennial-scale glacier thinning arose from unstable grounding line retreat. Capturing these instability processes in ice sheet models is important for predicting Antarctica's future contribution to sea level change. PMID:26608558

Variable solar irradiance as a plausible agent for multidecadal variations in the Arctic-wide surface air temperature record of the past 130 years

NASA Astrophysics Data System (ADS)

Soon, Willie W.-H.

2005-08-01

This letter offers new evidence motivating a more serious consideration of the potential Arctic temperature responses as a consequence of the decadal, multidecadal and longer-term persistent forcing by the ever-changing solar irradiance both in terms of total solar irradiance (TSI, i.e., integrated over all wavelengths) and the related UV irradiance. The support for such a solar modulator can be minimally derived from the large (>75%) explained variance for the decadally-smoothed Arctic surface air temperatures (SATs) by TSI and from the time-frequency structures of the TSI and Arctic SAT variability as examined by wavelet analyses. The reconstructed Arctic SAT time series based on the inverse wavelet transform, which includes decadal (5-15 years) and multidecadal (40-80 years) variations and a longer-term trend, contains nonstationary but persistent features that are highly correlated with the Sun's intrinsic magnetic variability especially on multidecadal time scales.

Measurement of the muon reconstruction performance of the ATLAS detector using 2011 and 2012 LHC proton–proton collision data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aad, G.

2014-11-26

This study presents the performance of the ATLAS muon reconstruction during the LHC run with pp collisions at √s = 7–8 TeV in 2011–2012, focusing mainly on data collected in 2012. Measurements of the reconstruction efficiency and of the momentum scale and resolution, based on large reference samples of J/ψ → μμ, Z → μμ and Υ → μμ decays, are presented and compared to Monte Carlo simulations. Corrections to the simulation, to be used in physics analysis, are provided. Over most of the covered phase space (muon |η| < 2.7 and 5 ≲ p T ≲ 100 GeV) themore » efficiency is above 99% and is measured with per-mille precision. The momentum resolution ranges from 1.7% at central rapidity and for transverse momentum p T ≃ 10 GeV, to 4% at large rapidity and p T ≃ 100 GeV. The momentum scale is known with an uncertainty of 0.05% to 0.2% depending on rapidity. A method for the recovery of final state radiation from the muons is also presented.« less

Measurement of the muon reconstruction performance of the ATLAS detector using 2011 and 2012 LHC proton-proton collision data.

PubMed

Aad, G; Abbott, B; Abdallah, J; Abdel Khalek, S; Abdinov, O; Aben, R; Abi, B; Abolins, M; AbouZeid, O S; Abramowicz, H; Abreu, H; Abreu, R; Abulaiti, Y; Acharya, B S; Adamczyk, L; Adams, D L; Adelman, J; Adomeit, S; Adye, T; Agatonovic-Jovin, T; Aguilar-Saavedra, J A; Agustoni, M; Ahlen, S P; Ahmadov, F; Aielli, G; Akerstedt, H; Åkesson, T P A; Akimoto, G; Akimov, A V; Alberghi, G L; Albert, J; Albrand, S; Alconada Verzini, M J; Aleksa, M; Aleksandrov, I N; Alexa, C; Alexander, G; Alexandre, G; Alexopoulos, T; Alhroob, M; Alimonti, G; Alio, L; Alison, J; Allbrooke, B M M; Allison, L J; Allport, P P; Almond, J; Aloisio, A; Alonso, A; Alonso, F; Alpigiani, C; Altheimer, A; Alvarez Gonzalez, B; Alviggi, M G; Amako, K; Amaral Coutinho, Y; Amelung, C; Amidei, D; Amor Dos Santos, S P; Amorim, A; Amoroso, S; Amram, N; Amundsen, G; Anastopoulos, C; Ancu, L S; Andari, N; Andeen, T; Anders, C F; Anders, G; Anderson, K J; Andreazza, A; Andrei, V; Anduaga, X S; Angelidakis, S; Angelozzi, I; Anger, P; Angerami, A; Anghinolfi, F; Anisenkov, A V; Anjos, N; Annovi, A; Antonaki, A; Antonelli, M; Antonov, A; Antos, J; Anulli, F; Aoki, M; Aperio Bella, L; Apolle, R; Arabidze, G; Aracena, I; Arai, Y; Araque, J P; Arce, A T H; Arguin, J-F; Argyropoulos, S; Arik, M; Armbruster, A J; Arnaez, O; Arnal, V; Arnold, H; Arratia, M; Arslan, O; Artamonov, A; Artoni, G; Asai, S; Asbah, N; Ashkenazi, A; Åsman, B; Asquith, L; Assamagan, K; Astalos, R; Atkinson, M; Atlay, N B; Auerbach, B; Augsten, K; Aurousseau, M; Avolio, G; Azuelos, G; Azuma, Y; Baak, M A; Baas, A; Bacci, C; Bachacou, H; Bachas, K; Backes, M; Backhaus, M; Backus Mayes, J; Badescu, E; Bagiacchi, P; Bagnaia, P; Bai, Y; Bain, T; Baines, J T; Baker, O K; Balek, P; Balli, F; Banas, E; Banerjee, Sw; Bannoura, A A E; Bansal, V; Bansil, H S; Barak, L; Baranov, S P; Barberio, E L; Barberis, D; Barbero, M; Barillari, T; Barisonzi, M; Barklow, T; Barlow, N; Barnett, B M; Barnett, R M; Barnovska, Z; Baroncelli, A; Barone, G; Barr, A J; Barreiro, F; Barreiro Guimarães da Costa, J; Bartoldus, R; Barton, A E; Bartos, P; Bartsch, V; Bassalat, A; Basye, A; Bates, R L; Batley, J R; Battaglia, M; Battistin, M; Bauer, F; Bawa, H S; Beattie, M D; Beau, T; Beauchemin, P H; Beccherle, R; Bechtle, P; Beck, H P; Becker, K; Becker, S; Beckingham, M; Becot, C; Beddall, A J; Beddall, A; Bedikian, S; Bednyakov, V A; Bee, C P; Beemster, L J; Beermann, T A; Begel, M; Behr, K; Belanger-Champagne, C; Bell, P J; Bell, W H; Bella, G; Bellagamba, L; Bellerive, A; Bellomo, M; Belotskiy, K; Beltramello, O; Benary, O; Benchekroun, D; Bendtz, K; Benekos, N; Benhammou, Y; Benhar Noccioli, E; Benitez Garcia, J A; Benjamin, D P; Bensinger, J R; Benslama, K; Bentvelsen, S; Berge, D; Bergeaas Kuutmann, E; Berger, N; Berghaus, F; Beringer, J; Bernard, C; Bernat, P; Bernius, C; Bernlochner, F U; Berry, T; Berta, P; Bertella, C; Bertoli, G; Bertolucci, F; Bertsche, C; Bertsche, D; Bessner, M; Besana, M I; Besjes, G J; Bessidskaia, O; Besson, N; Betancourt, C; Bethke, S; Bhimji, W; Bianchi, R M; Bianchini, L; Bianco, M; Biebel, O; Bieniek, S P; Bierwagen, K; Biesiada, J; Biglietti, M; Bilbao De Mendizabal, J; Bilokon, H; Bindi, M; Binet, S; Bingul, A; Bini, C; Black, C W; Black, J E; Black, K M; Blackburn, D; Blair, R E; Blanchard, J-B; Blazek, T; Bloch, I; Blocker, C; Blum, W; Blumenschein, U; Bobbink, G J; Bobrovnikov, V S; Bocchetta, S S; Bocci, A; Bock, C; Boddy, C R; Boehler, M; Boek, T T; Bogaerts, J A; Bogdanchikov, A G; Bogouch, A; Bohm, C; Bohm, J; Boisvert, V; Bold, T; Boldea, V; Boldyrev, A S; Bomben, M; Bona, M; Boonekamp, M; Borisov, A; Borissov, G; Borri, M; Borroni, S; Bortfeldt, J; Bortolotto, V; Bos, K; Boscherini, D; Bosman, M; Boterenbrood, H; Boudreau, J; Bouffard, J; Bouhova-Thacker, E V; Boumediene, D; Bourdarios, C; Bousson, N; Boutouil, S; Boveia, A; Boyd, J; Boyko, I R; Bracinik, J; Brandt, A; Brandt, G; Brandt, O; Bratzler, U; Brau, B; Brau, J E; Braun, H M; Brazzale, S F; Brelier, B; Brendlinger, K; Brennan, A J; Brenner, R; Bressler, S; Bristow, K; Bristow, T M; Britton, D; Brochu, F M; Brock, I; Brock, R; Bromberg, C; Bronner, J; Brooijmans, G; Brooks, T; Brooks, W K; Brosamer, J; Brost, E; Brown, J; Bruckman de Renstrom, P A; Bruncko, D; Bruneliere, R; Brunet, S; Bruni, A; Bruni, G; Bruschi, M; Bryngemark, L; Buanes, T; Buat, Q; Bucci, F; Buchholz, P; Buckingham, R M; Buckley, A G; Buda, S I; Budagov, I A; Buehrer, F; Bugge, L; Bugge, M K; Bulekov, O; Bundock, A C; Burckhart, H; Burdin, S; Burghgrave, B; Burke, S; Burmeister, I; Busato, E; Büscher, D; Büscher, V; Bussey, P; Buszello, C P; Butler, B; Butler, J M; Butt, A I; Buttar, C M; Butterworth, J M; Butti, P; Buttinger, W; Buzatu, A; Byszewski, M; Cabrera Urbán, S; Caforio, D; Cakir, O; Calafiura, P; Calandri, A; Calderini, G; Calfayan, P; Calkins, R; Caloba, L P; Calvet, D; Calvet, S; Camacho Toro, R; Camarda, S; Cameron, D; Caminada, L M; Caminal Armadans, R; Campana, S; Campanelli, M; Campoverde, A; Canale, V; Canepa, A; Cano Bret, M; Cantero, J; Cantrill, R; Cao, T; Capeans Garrido, M D M; Caprini, I; Caprini, M; Capua, M; Caputo, R; Cardarelli, R; Carli, T; Carlino, G; Carminati, L; Caron, S; Carquin, E; Carrillo-Montoya, G D; Carter, J R; Carvalho, J; Casadei, D; Casado, M P; Casolino, M; Castaneda-Miranda, E; Castelli, A; Castillo Gimenez, V; Castro, N F; Catastini, P; Catinaccio, A; Catmore, J R; Cattai, A; Cattani, G; Caughron, S; Cavaliere, V; Cavalli, D; Cavalli-Sforza, M; Cavasinni, V; Ceradini, F; Cerio, B; Cerny, K; Cerqueira, A S; Cerri, A; Cerrito, L; Cerutti, F; Cerv, M; Cervelli, A; Cetin, S A; Chafaq, A; Chakraborty, D; Chalupkova, I; Chang, P; Chapleau, B; Chapman, J D; Charfeddine, D; Charlton, D G; Chau, C C; Chavez Barajas, C A; Cheatham, S; Chegwidden, A; Chekanov, S; Chekulaev, S V; Chelkov, G A; Chelstowska, M A; Chen, C; Chen, H; Chen, K; Chen, L; Chen, S; Chen, X; Chen, Y; Chen, Y; Cheng, H C; Cheng, Y; Cheplakov, A; Cherkaoui El Moursli, R; Chernyatin, V; Cheu, E; Chevalier, L; Chiarella, V; Chiefari, G; 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This paper presents the performance of the ATLAS muon reconstruction during the LHC run with [Formula: see text] collisions at [Formula: see text]-8 TeV in 2011-2012, focusing mainly on data collected in 2012. Measurements of the reconstruction efficiency and of the momentum scale and resolution, based on large reference samples of [Formula: see text], [Formula: see text] and [Formula: see text] decays, are presented and compared to Monte Carlo simulations. Corrections to the simulation, to be used in physics analysis, are provided. Over most of the covered phase space (muon [Formula: see text] and [Formula: see text] GeV) the efficiency is above [Formula: see text] and is measured with per-mille precision. The momentum resolution ranges from [Formula: see text] at central rapidity and for transverse momentum [Formula: see text] GeV, to [Formula: see text] at large rapidity and [Formula: see text] GeV. The momentum scale is known with an uncertainty of [Formula: see text] to [Formula: see text] depending on rapidity. A method for the recovery of final state radiation from the muons is also presented.

Estimation of polarization distribution on gold nanorods system from hierarchical features of optical near-field

NASA Astrophysics Data System (ADS)

Uchiyama, Kazuharu; Nishikawa, Naoki; Nakagomi, Ryo; Kobayashi, Kiyoshi; Hori, Hirokazu

2018-02-01

To design optoelectronic functionalities in nanometer scale based on interactions of electronic system with optical near-fields, it is essential to evaluate the relationship between optical near-fields and their sources. Several theoretical studies have been performed, so far, to analyze such complex relationship to design the interaction fields of several specific scales. In this study, we have performed detailed and high-precision measurements of optical near-field structures woven by a large number of independent polarizations generated in the gold nanorods array under laser light irradiation at the resonant frequency. We have accumulated the multi-layered data of optical near-field imaging at different heights above the planar surface with the resolution of several nm by a STM-assisted scanning near-field optical microscope. Based on these data, we have performed an inverse calculation to estimate the position, direction, and strength of the local polarization buried under the flat surface of the sample. As a result of the inverse operation, we have confirmed that the complexities in the nanometer scale optical near-fields could be reconstructed by combinations of induced polarization in each gold nanorod. We have demonstrated the hierarchical properties of optical near-fields based on spatial frequency expansion and superposition of dipole fields to provide insightful information for applications such for secure multi-layered information storage.

Subduction History and the Evolution of Earth's Lower Mantle

NASA Astrophysics Data System (ADS)

Bull, Abigail; Shephard, Grace; Torsvik, Trond

2016-04-01

Understanding the complex structure, dynamics and evolution of the deep mantle is a fundamental goal in solid Earth geophysics. Close to the core-mantle boundary, seismic images reveal a mantle characterised by (1) higher than average shear wave speeds beneath Asia and encircling the Pacific, consistent with sub ducting lithosphere beneath regions of ancient subduction, and (2) large regions of anomalously low seismic wavespeeds beneath Africa and the Central Pacific. The anomalously slow areas are often referred to as Large Low Shear Velocity Provinces (LLSVPs) due to the reduced velocity of seismic waves passing through them. The origin, composition and long-term evolution of the LLSVPs remain enigmatic. Geochemical inferences of multiple chemical reservoirs at depth, strong seismic contrasts, increased density, and an anticorrelation of shear wave velocity to bulk sound velocity in the anomalous regions imply that heterogeneities in both temperature and composition may be required to explain the seismic observations. Consequently, heterogeneous mantle models place the anomalies into the context of thermochemical piles, characterised by an anomalous component whose intrinsic density is a few percent higher relative to that of the surrounding mantle. Several hypotheses have arisen to explain the LLSVPs in the context of large-scale mantle convection. One end member scenario suggests that the LLSVPs are relatively mobile features over short timescales and thus are strongly affected by supercontinent cycles and Earth's plate motion history. In this scenario, the African LLSVP formed as a result of return flow in the mantle due to circum-Pangean subduction (~240 Ma), contrasting a much older Pacific LLSVP, which may be linked to the Rodinia supercontinent and is implied to have remained largely unchanged since Rodinian breakup (~750-700 Ma). This propounds that Earth's plate motion history plays a controlling role in LLSVP development, suggesting that the location, geometry and morphology of lower mantle structures can be influenced by the movement of subducting slabs, and thus by the motions of tectonic plates at the surface. Alternatively, a long-term stability for both LLSVPs, which would suggest a first-order dissociation from the effects of surface plate motions, is hypothesised by recent studies which propose a geographic correlation between the reconstructed surface eruption sites of kimberlites and Large Igneous Provinces with the margins of the LLSVPs. If the surface volcanism was sourced from the lower mantle, such a link would suggest that the LLSVPs may have remained stationary for at least the age of the volcanic rocks (> 500 Myr) and further that the anomalies were largely insensitive to the formation and subsequent breakup of Pangea, and thus to Earth's plate motion history. Here we discuss the evolution of lower mantle structure, LLSVPs and surface volcanics in terms of subduction dynamics. We integrate high-resolution plate tectonic histories and numerical models of mantle convection and perform a series of 3D spherical calculations with Earth-like boundary conditions to investigate the role that subduction history plays in the development and evolution of lower mantle structures. To test whether such an interaction exists, and if so, to what degree over time, we apply varying shifts to the absolute reference frame of the plate reconstruction. We incorporate global shifts in both longitude and latitude, with the correction applied over timescales of 230-50 Myrs. With this method, the location of subduction at the surface and thus the global flow field can be altered. This in turn affects the time-dependent sinking of lithospheric slabs and may affect their interaction with the lower mantle and the LLSVPs at both their margins and top surfaces. We aim to understand how the subduction history has affected mantle structure on a global scale. We show that shifts to the surface history of subduction, even for extreme and unrealistic cases, lead to minimal changes in LLSVP geometry and position, suggesting that the LLSVPs may be long-lived features (> 250 Ma).

Centennial-scale winter climate variability over the last two millennia in the northern Gulf of Mexico based on paired δ18O and Mg/Ca in Globorotalia truncatulinoides

NASA Astrophysics Data System (ADS)

Fortiz, V.; Thirumalai, K.; Richey, J. N.; Quinn, T. M.

2014-12-01

We present a replicated record of paired foraminiferal δ18O and Mg/Ca variations in multi-cores collected from the Garrison Basin (26º43'N, 93º55'W) in the northern Gulf of Mexico (GOM). Using δ18O (sea surface temperature, SST; sea surface salinity, SSS proxy) and Mg/Ca (SST proxy) variations in non-encrusted planktic foraminifer Globorotalia truncatulinoides we produce time series spanning the last two millennia that is characterized by centennial-scale climate variability. We interpret geochemical variations in G. truncatulinoides to reflect winter climate variability because data from a sediment trap, located ~350 km east of the core site, reveal that annual flux of G. truncatulinoides is heavily weighted towards winter (peak production in January-February; Spear et al., 2011). Similar centennial-scale variability is also observed in the foraminiferal geochemistry of Globigerinoides ruber in the same multi-cores, which likely reflect mean annual climate variations. Our replicated results and comparisons to other SST reconstructions from the region lend confidence that the northern GOM surface ocean underwent large, centennial-scale variability, most likely dominated by changes in winter climate. This variability occurred in a time period where climate forcing is small and background conditions are similar to pre-industrial times. References: Spear, J.W.; Poore, R.Z., and Quinn, T.M., 2011, Globorotalia truncatulinoides (dextral) Mg/Ca as a proxy for Gulf of Mexico winter mixed-layer temperature: Evidence from a sediment trap in the northern Gulf of Mexico. Marine Micropaleontology, 80, 53-61.

A sparsity-based iterative algorithm for reconstruction of micro-CT images from highly undersampled projection datasets obtained with a synchrotron X-ray source

NASA Astrophysics Data System (ADS)

Melli, S. Ali; Wahid, Khan A.; Babyn, Paul; Cooper, David M. L.; Gopi, Varun P.

2016-12-01

Synchrotron X-ray Micro Computed Tomography (Micro-CT) is an imaging technique which is increasingly used for non-invasive in vivo preclinical imaging. However, it often requires a large number of projections from many different angles to reconstruct high-quality images leading to significantly high radiation doses and long scan times. To utilize this imaging technique further for in vivo imaging, we need to design reconstruction algorithms that reduce the radiation dose and scan time without reduction of reconstructed image quality. This research is focused on using a combination of gradient-based Douglas-Rachford splitting and discrete wavelet packet shrinkage image denoising methods to design an algorithm for reconstruction of large-scale reduced-view synchrotron Micro-CT images with acceptable quality metrics. These quality metrics are computed by comparing the reconstructed images with a high-dose reference image reconstructed from 1800 equally spaced projections spanning 180°. Visual and quantitative-based performance assessment of a synthetic head phantom and a femoral cortical bone sample imaged in the biomedical imaging and therapy bending magnet beamline at the Canadian Light Source demonstrates that the proposed algorithm is superior to the existing reconstruction algorithms. Using the proposed reconstruction algorithm to reduce the number of projections in synchrotron Micro-CT is an effective way to reduce the overall radiation dose and scan time which improves in vivo imaging protocols.

A Last Glacial Maximum world-ocean simulation at eddy-permitting resolution - Part 1: Experimental design and basic evaluation

NASA Astrophysics Data System (ADS)

Ballarotta, M.; Brodeau, L.; Brandefelt, J.; Lundberg, P.; Döös, K.

2013-01-01

Most state-of-the-art climate models include a coarsely resolved oceanic component, which has difficulties in capturing detailed dynamics, and therefore eddy-permitting/eddy-resolving simulations have been developed to reproduce the observed World Ocean. In this study, an eddy-permitting numerical experiment is conducted to simulate the global ocean state for a period of the Last Glacial Maximum (LGM, ~ 26 500 to 19 000 yr ago) and to investigate the improvements due to taking into account these higher spatial scales. The ocean general circulation model is forced by a 49-yr sample of LGM atmospheric fields constructed from a quasi-equilibrated climate-model simulation. The initial state and the bottom boundary condition conform to the Paleoclimate Modelling Intercomparison Project (PMIP) recommendations. Before evaluating the model efficiency in representing the paleo-proxy reconstruction of the surface state, the LGM experiment is in this first part of the investigation, compared with a present-day eddy-permitting hindcast simulation as well as with the available PMIP results. It is shown that the LGM eddy-permitting simulation is consistent with the quasi-equilibrated climate-model simulation, but large discrepancies are found with the PMIP model analyses, probably due to the different equilibration states. The strongest meridional gradients of the sea-surface temperature are located near 40° N and S, this due to particularly large North-Atlantic and Southern-Ocean sea-ice covers. These also modify the locations of the convection sites (where deep-water forms) and most of the LGM Conveyor Belt circulation consequently takes place in a thinner layer than today. Despite some discrepancies with other LGM simulations, a glacial state is captured and the eddy-permitting simulation undertaken here yielded a useful set of data for comparisons with paleo-proxy reconstructions.

Spectrally resolved chromatic confocal interferometry for one-shot nano-scale surface profilometry with several tens of micrometric depth range

NASA Astrophysics Data System (ADS)

Chen, Liang-Chia; Chen, Yi-Shiuan; Chang, Yi-Wei; Lin, Shyh-Tsong; Yeh, Sheng Lih

2013-01-01

In this research, new nano-scale measurement methodology based on spectrally-resolved chromatic confocal interferometry (SRCCI) was successfully developed by employing integration of chromatic confocal sectioning and spectrally-resolve white light interferometry (SRWLI) for microscopic three dimensional surface profilometry. The proposed chromatic confocal method (CCM) using a broad band while light in combination with a specially designed chromatic dispersion objective is capable of simultaneously acquiring multiple images at a large range of object depths to perform surface 3-D reconstruction by single image shot without vertical scanning and correspondingly achieving a high measurement depth range up to hundreds of micrometers. A Linnik-type interferometric configuration based on spectrally resolved white light interferometry is developed and integrated with the CCM to simultaneously achieve nanoscale axis resolution for the detection point. The white-light interferograms acquired at the exit plane of the spectrometer possess a continuous variation of wavelength along the chromaticity axis, in which the light intensity reaches to its peak when the optical path difference equals to zero between two optical arms. To examine the measurement accuracy of the developed system, a pre-calibrated accurate step height target with a total step height of 10.10 μm was measured. The experimental result shows that the maximum measurement error was verified to be less than 0.3% of the overall measuring height.

Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ Coprocessor.

PubMed

Misra, Sanchit; Pamnany, Kiran; Aluru, Srinivas

2015-01-01

Construction of whole-genome networks from large-scale gene expression data is an important problem in systems biology. While several techniques have been developed, most cannot handle network reconstruction at the whole-genome scale, and the few that can, require large clusters. In this paper, we present a solution on the Intel Xeon Phi coprocessor, taking advantage of its multi-level parallelism including many x86-based cores, multiple threads per core, and vector processing units. We also present a solution on the Intel® Xeon® processor. Our solution is based on TINGe, a fast parallel network reconstruction technique that uses mutual information and permutation testing for assessing statistical significance. We demonstrate the first ever inference of a plant whole genome regulatory network on a single chip by constructing a 15,575 gene network of the plant Arabidopsis thaliana from 3,137 microarray experiments in only 22 minutes. In addition, our optimization for parallelizing mutual information computation on the Intel Xeon Phi coprocessor holds out lessons that are applicable to other domains.

Focused-based multifractal analysis of the wake in a wind turbine array utilizing proper orthogonal decomposition

NASA Astrophysics Data System (ADS)

Kadum, Hawwa; Ali, Naseem; Cal, Raúl

2016-11-01

Hot-wire anemometry measurements have been performed on a 3 x 3 wind turbine array to study the multifractality of the turbulent kinetic energy dissipations. A multifractal spectrum and Hurst exponents are determined at nine locations downstream of the hub height, and bottom and top tips. Higher multifractality is found at 0.5D and 1D downstream of the bottom tip and hub height. The second order of the Hurst exponent and combination factor show an ability to predict the flow state in terms of its development. Snapshot proper orthogonal decomposition is used to identify the coherent and incoherent structures and to reconstruct the stochastic velocity using a specific number of the POD eigenfunctions. The accumulation of the turbulent kinetic energy in top tip location exhibits fast convergence compared to the bottom tip and hub height locations. The dissipation of the large and small scales are determined using the reconstructed stochastic velocities. The higher multifractality is shown in the dissipation of the large scale compared to small-scale dissipation showing consistency with the behavior of the original signals.

Whole-Brain Source-Reconstructed MEG-Data Reveal Reduced Long-Range Synchronization in Chronic Schizophrenia.

PubMed

Hirvonen, Jonni; Wibral, Michael; Palva, J Matias; Singer, Wolf; Uhlhaas, Peter; Palva, Satu

2017-01-01

Current theories of schizophrenia (ScZ) posit that the symptoms and cognitive dysfunctions arise from a dysconnection syndrome. However, studies that have examined this hypothesis with physiological data at realistic time scales are so far scarce. The current study employed a state-of-the-art approach using Magnetoencephalography (MEG) to test alterations in large-scale phase synchronization in a sample of n = 16 chronic ScZ patients, 10 males and n = 19 healthy participants, 10 males, during a perceptual closure task. We identified large-scale networks from source reconstructed MEG data using data-driven analyses of neuronal synchronization. Oscillation amplitudes and interareal phase-synchronization in the 3-120 Hz frequency range were estimated for 400 cortical parcels and correlated with clinical symptoms and neuropsychological scores. ScZ patients were characterized by a reduction in γ-band (30-120 Hz) oscillation amplitudes that was accompanied by a pronounced deficit in large-scale synchronization at γ-band frequencies. Synchronization was reduced within visual regions as well as between visual and frontal cortex and the reduction of synchronization correlated with elevated clinical disorganization. Accordingly, these data highlight that ScZ is associated with a profound disruption of transient synchronization, providing critical support for the notion that core aspect of the pathophysiology arises from an impairment in coordination of distributed neural activity.

Whole-Brain Source-Reconstructed MEG-Data Reveal Reduced Long-Range Synchronization in Chronic Schizophrenia

PubMed Central

Hirvonen, Jonni; Palva, J. Matias; Singer, Wolf; Uhlhaas, Peter

2017-01-01

Abstract Current theories of schizophrenia (ScZ) posit that the symptoms and cognitive dysfunctions arise from a dysconnection syndrome. However, studies that have examined this hypothesis with physiological data at realistic time scales are so far scarce. The current study employed a state-of-the-art approach using Magnetoencephalography (MEG) to test alterations in large-scale phase synchronization in a sample of n = 16 chronic ScZ patients, 10 males and n = 19 healthy participants, 10 males, during a perceptual closure task. We identified large-scale networks from source reconstructed MEG data using data-driven analyses of neuronal synchronization. Oscillation amplitudes and interareal phase-synchronization in the 3–120 Hz frequency range were estimated for 400 cortical parcels and correlated with clinical symptoms and neuropsychological scores. ScZ patients were characterized by a reduction in γ-band (30–120 Hz) oscillation amplitudes that was accompanied by a pronounced deficit in large-scale synchronization at γ-band frequencies. Synchronization was reduced within visual regions as well as between visual and frontal cortex and the reduction of synchronization correlated with elevated clinical disorganization. Accordingly, these data highlight that ScZ is associated with a profound disruption of transient synchronization, providing critical support for the notion that core aspect of the pathophysiology arises from an impairment in coordination of distributed neural activity. PMID:29085902

3D Reconstruction of geological structures based on remote sensing data: example from Anaran anticline, Lurestan province, Zagros folds and thrust belt, Iran.

NASA Astrophysics Data System (ADS)

Snidero, M.; Amilibia, A.; Gratacos, O.; Muñoz, J. A.

2009-04-01

This work presents a methodological workflow for the 3D reconstruction of geological surfaces at regional scale, based on remote sensing data and geological maps. This workflow has been tested on the reconstruction of the Anaran anticline, located in the Zagros Fold and Thrust belt mountain front. The used remote sensing data-set is a combination of Aster and Spot images as well as a high resolution digital elevation model. A consistent spatial positioning of the complete data-set in a 3D environment is necessary to obtain satisfactory results during the reconstruction. The Aster images have been processed by the Optimum Index Factor (OIF) technique, in order to facilitate the geological mapping. By pansharpening of the resulting Aster image with the SPOT panchromatic one we obtain the final high-resolution image used during the 3D mapping. Structural data (dip data) has been acquired through the analysis of the 3D mapped geological traces. Structural analysis of the resulting data-set allows us to divide the structure in different cylindrical domains. Related plunge lines orientation has been used to project data along the structure, covering areas with little or no information. Once a satisfactory dataset has been acquired, we reconstruct a selected horizon following the dip-domain concept. By manual editing, the obtained surfaces have been adjusted to the mapped geological limits as well as to the modeled faults. With the implementation of the Discrete Smooth Interpolation (DSI) algorithm, the final surfaces have been reconstructed along the anticline. Up to date the results demonstrate that the proposed methodology is a powerful tool for 3D reconstruction of geological surfaces when working with remote sensing data, in very inaccessible areas (eg. Iran, China, Africa). It is especially useful in semiarid regions where the structure strongly controls the topography. The reconstructed surfaces clearly show the geometry in the different sectors of the structure: presence of a back thrust affecting the back limb in the southern part of the anticline, the geometry of the grabens located along the anticline crest, the crosscutting relationship in the north-south faulted zone with the main thrust, the northern dome periclinal closure.

Super Clausius-Clapeyron scaling of extreme hourly precipitation and its relation to large-scale atmospheric conditions

NASA Astrophysics Data System (ADS)

Lenderink, Geert; Barbero, Renaud; Loriaux, Jessica; Fowler, Hayley

2017-04-01

Present-day precipitation-temperature scaling relations indicate that hourly precipitation extremes may have a response to warming exceeding the Clausius-Clapeyron (CC) relation; for The Netherlands the dependency on surface dew point temperature follows two times the CC relation corresponding to 14 % per degree. Our hypothesis - as supported by a simple physical argument presented here - is that this 2CC behaviour arises from the physics of convective clouds. So, we think that this response is due to local feedbacks related to the convective activity, while other large scale atmospheric forcing conditions remain similar except for the higher temperature (approximately uniform warming with height) and absolute humidity (corresponding to the assumption of unchanged relative humidity). To test this hypothesis, we analysed the large-scale atmospheric conditions accompanying summertime afternoon precipitation events using surface observations combined with a regional re-analysis for the data in The Netherlands. Events are precipitation measurements clustered in time and space derived from approximately 30 automatic weather stations. The hourly peak intensities of these events again reveal a 2CC scaling with the surface dew point temperature. The temperature excess of moist updrafts initialized at the surface and the maximum cloud depth are clear functions of surface dew point temperature, confirming the key role of surface humidity on convective activity. Almost no differences in relative humidity and the dry temperature lapse rate were found across the dew point temperature range, supporting our theory that 2CC scaling is mainly due to the response of convection to increases in near surface humidity, while other atmospheric conditions remain similar. Additionally, hourly precipitation extremes are on average accompanied by substantial large-scale upward motions and therefore large-scale moisture convergence, which appears to accelerate with surface dew point. This increase in large-scale moisture convergence appears to be consequence of latent heat release due to the convective activity as estimated from the quasi-geostrophic omega equation. Consequently, most hourly extremes occur in precipitation events with considerable spatial extent. Importantly, this event size appears to increase rapidly at the highest dew point temperature range, suggesting potentially strong impacts of climatic warming.

Constraining self-interacting dark matter with scaling laws of observed halo surface densities

NASA Astrophysics Data System (ADS)

Bondarenko, Kyrylo; Boyarsky, Alexey; Bringmann, Torsten; Sokolenko, Anastasia

2018-04-01

The observed surface densities of dark matter halos are known to follow a simple scaling law, ranging from dwarf galaxies to galaxy clusters, with a weak dependence on their virial mass. Here we point out that this can not only be used to provide a method to determine the standard relation between halo mass and concentration, but also to use large samples of objects in order to place constraints on dark matter self-interactions that can be more robust than constraints derived from individual objects. We demonstrate our method by considering a sample of about 50 objects distributed across the whole halo mass range, and by modelling the effect of self-interactions in a way similar to what has been previously done in the literature. Using additional input from simulations then results in a constraint on the self-interaction cross section per unit dark matter mass of about σ/mχlesssim 0.3 cm2/g. We expect that these constraints can be significantly improved in the future, and made more robust, by i) an improved modelling of the effect of self-interactions, both theoretical and by comparison with simulations, ii) taking into account a larger sample of objects and iii) by reducing the currently still relatively large uncertainties that we conservatively assign to the surface densities of individual objects. The latter can be achieved in particular by using kinematic observations to directly constrain the average halo mass inside a given radius, rather than fitting the data to a pre-selected profile and then reconstruct the mass. For a velocity-independent cross-section, our current result is formally already somewhat smaller than the range 0.5‑5 cm2/g that has been invoked to explain potential inconsistencies between small-scale observations and expectations in the standard collisionless cold dark matter paradigm.

The Østerild Balconies Experiment

NASA Astrophysics Data System (ADS)

Karagali, I.; Mann, J.; Dellwik, E.; Simon, E.; Vasiljevic, N.; Larsen, G. C.

2017-12-01

The New European Wind Atlas (NEWA) is a joint effort of research agencies from eight European countries, co-funded under the ERANET Plus Program. The project is structured around two areas of work: development of dynamical downscaling methodologies and measurement campaigns to validate these methodologies, leading to the creation and publication of a European wind atlas in electronic form. One of the main objectives of the NEWA project is to carry out large-scale field experiments at a high spatial and temporal resolution, and provide a significant upgrade to the experimental databases currently available. The Østerild balconies experiment obtained high resolution measurements over an extended horizontal plane to quantify the effect of unevenly forested terrain on the mean wind field. The experiment was performed, between April 12 and August 12 2016, at the Østerild test station for large wind turbines, where DTU Wind Energy operates two 250 m tall meteorological towers, located in northern Denmark. During the first stage of the measurement campaign, a simple balcony-type structure was installed at a height of 50 m above local ground level (AGL), in each of the towers. A wind scanning lidar was placed on each of the balconies, thus the two instruments were simultaneously scanning an area thereby making it possible to reconstruct the wind field and quantify the wind speed variability in a horizontal plane. During the second phase of the experiment, the balconies were raised at the height of 200 m AGL, in order to verify and study the weaker imprint of surface heterogeneity on mean winds but also to study the large-scale spatial and temporal statistics of winds. The aim of the present study is to present the analyses of the measurements to obtain the horizontal wind field reconstruction and the preliminary results of the average wind flow patterns in relation to the terrain characteristics, during the period of available measurements.

Reconstructing Past Ocean Salinity ((delta)18Owater)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guilderson, T P; Pak, D K

2005-11-23

Temperature and salinity are two of the key properties of ocean water masses. The distribution of these two independent but related characteristics reflects the interplay of incoming solar radiation (insolation) and the uneven distribution of heat loss and gain by the ocean, with that of precipitation, evaporation, and the freezing and melting of ice. Temperature and salinity to a large extent, determine the density of a parcel of water. Small differences in temperature and salinity can increase or decrease the density of a water parcel, which can lead to convection. Once removed from the surface of the ocean where 'local'more » changes in temperature and salinity can occur, the water parcel retains its distinct relationship between (potential) temperature and salinity. We can take advantage of this 'conservative' behavior where changes only occur as a result of mixing processes, to track the movement of water in the deep ocean (Figure 1). The distribution of density in the ocean is directly related to horizontal pressure gradients and thus (geostrophic) ocean currents. During the Quaternary when we have had systematic growth and decay of large land based ice sheets, salinity has had to change. A quick scaling argument following that of Broecker and Peng [1982] is: the modern ocean has a mean salinity of 34.7 psu and is on average 3500m deep. During glacial maxima sea level was on the order of {approx}120m lower than present. Simply scaling the loss of freshwater (3-4%) requires an average increase in salinity a similar percentage or to {approx}35.9psu. Because much of the deep ocean is of similar temperature, small changes in salinity have a large impact on density, yielding a potentially different distribution of water masses and control of the density driven (thermohaline) ocean circulation. It is partly for this reason that reconstructions of past salinity are of interest to paleoceanographers.« less

Atmospheric inverse modeling via sparse reconstruction

NASA Astrophysics Data System (ADS)

Hase, Nils; Miller, Scot M.; Maaß, Peter; Notholt, Justus; Palm, Mathias; Warneke, Thorsten

2017-10-01

Many applications in atmospheric science involve ill-posed inverse problems. A crucial component of many inverse problems is the proper formulation of a priori knowledge about the unknown parameters. In most cases, this knowledge is expressed as a Gaussian prior. This formulation often performs well at capturing smoothed, large-scale processes but is often ill equipped to capture localized structures like large point sources or localized hot spots. Over the last decade, scientists from a diverse array of applied mathematics and engineering fields have developed sparse reconstruction techniques to identify localized structures. In this study, we present a new regularization approach for ill-posed inverse problems in atmospheric science. It is based on Tikhonov regularization with sparsity constraint and allows bounds on the parameters. We enforce sparsity using a dictionary representation system. We analyze its performance in an atmospheric inverse modeling scenario by estimating anthropogenic US methane (CH4) emissions from simulated atmospheric measurements. Different measures indicate that our sparse reconstruction approach is better able to capture large point sources or localized hot spots than other methods commonly used in atmospheric inversions. It captures the overall signal equally well but adds details on the grid scale. This feature can be of value for any inverse problem with point or spatially discrete sources. We show an example for source estimation of synthetic methane emissions from the Barnett shale formation.

The Large-scale Structure of the Universe: Probes of Cosmology and Structure Formation

NASA Astrophysics Data System (ADS)

Noh, Yookyung

The usefulness of large-scale structure as a probe of cosmology and structure formation is increasing as large deep surveys in multi-wavelength bands are becoming possible. The observational analysis of large-scale structure guided by large volume numerical simulations are beginning to offer us complementary information and crosschecks of cosmological parameters estimated from the anisotropies in Cosmic Microwave Background (CMB) radiation. Understanding structure formation and evolution and even galaxy formation history is also being aided by observations of different redshift snapshots of the Universe, using various tracers of large-scale structure. This dissertation work covers aspects of large-scale structure from the baryon acoustic oscillation scale, to that of large scale filaments and galaxy clusters. First, I discuss a large- scale structure use for high precision cosmology. I investigate the reconstruction of Baryon Acoustic Oscillation (BAO) peak within the context of Lagrangian perturbation theory, testing its validity in a large suite of cosmological volume N-body simulations. Then I consider galaxy clusters and the large scale filaments surrounding them in a high resolution N-body simulation. I investigate the geometrical properties of galaxy cluster neighborhoods, focusing on the filaments connected to clusters. Using mock observations of galaxy clusters, I explore the correlations of scatter in galaxy cluster mass estimates from multi-wavelength observations and different measurement techniques. I also examine the sources of the correlated scatter by considering the intrinsic and environmental properties of clusters.

Consistent cortical reconstruction and multi-atlas brain segmentation.

PubMed

Huo, Yuankai; Plassard, Andrew J; Carass, Aaron; Resnick, Susan M; Pham, Dzung L; Prince, Jerry L; Landman, Bennett A

2016-09-01

Whole brain segmentation and cortical surface reconstruction are two essential techniques for investigating the human brain. Spatial inconsistences, which can hinder further integrated analyses of brain structure, can result due to these two tasks typically being conducted independently of each other. FreeSurfer obtains self-consistent whole brain segmentations and cortical surfaces. It starts with subcortical segmentation, then carries out cortical surface reconstruction, and ends with cortical segmentation and labeling. However, this "segmentation to surface to parcellation" strategy has shown limitations in various cohorts such as older populations with large ventricles. In this work, we propose a novel "multi-atlas segmentation to surface" method called Multi-atlas CRUISE (MaCRUISE), which achieves self-consistent whole brain segmentations and cortical surfaces by combining multi-atlas segmentation with the cortical reconstruction method CRUISE. A modification called MaCRUISE(+) is designed to perform well when white matter lesions are present. Comparing to the benchmarks CRUISE and FreeSurfer, the surface accuracy of MaCRUISE and MaCRUISE(+) is validated using two independent datasets with expertly placed cortical landmarks. A third independent dataset with expertly delineated volumetric labels is employed to compare segmentation performance. Finally, 200MR volumetric images from an older adult sample are used to assess the robustness of MaCRUISE and FreeSurfer. The advantages of MaCRUISE are: (1) MaCRUISE constructs self-consistent voxelwise segmentations and cortical surfaces, while MaCRUISE(+) is robust to white matter pathology. (2) MaCRUISE achieves more accurate whole brain segmentations than independently conducting the multi-atlas segmentation. (3) MaCRUISE is comparable in accuracy to FreeSurfer (when FreeSurfer does not exhibit global failures) while achieving greater robustness across an older adult population. MaCRUISE has been made freely available in open source. Copyright © 2016 Elsevier Inc. All rights reserved.

Sensitivity of the two-dimensional shearless mixing layer to the initial turbulent kinetic energy and integral length scale

NASA Astrophysics Data System (ADS)

Fathali, M.; Deshiri, M. Khoshnami

2016-04-01

The shearless mixing layer is generated from the interaction of two homogeneous isotropic turbulence (HIT) fields with different integral scales ℓ1 and ℓ2 and different turbulent kinetic energies E1 and E2. In this study, the sensitivity of temporal evolutions of two-dimensional, incompressible shearless mixing layers to the parametric variations of ℓ1/ℓ2 and E1/E2 is investigated. The sensitivity methodology is based on the nonintrusive approach; using direct numerical simulation and generalized polynomial chaos expansion. The analysis is carried out at Reℓ 1=90 for the high-energy HIT region and different integral length scale ratios 1 /4 ≤ℓ1/ℓ2≤4 and turbulent kinetic energy ratios 1 ≤E1/E2≤30 . It is found that the most influential parameter on the variability of the mixing layer evolution is the turbulent kinetic energy while variations of the integral length scale show a negligible influence on the flow field variability. A significant level of anisotropy and intermittency is observed in both large and small scales. In particular, it is found that large scales have higher levels of intermittency and sensitivity to the variations of ℓ1/ℓ2 and E1/E2 compared to the small scales. Reconstructed response surfaces of the flow field intermittency and the turbulent penetration depth show monotonic dependence on ℓ1/ℓ2 and E1/E2 . The mixing layer growth rate and the mixing efficiency both show sensitive dependence on the initial condition parameters. However, the probability density function of these quantities shows relatively small solution variations in response to the variations of the initial condition parameters.

A Reconstruction of Subtropical Western North Pacific SST Variability Back to 1578, Based on a Porites Coral Sr/Ca Record from the Northern Ryukyus, Japan

NASA Astrophysics Data System (ADS)

Kawakubo, Y.; Alibert, C.; Yokoyama, Y.

2017-12-01

We present a seasonal reconstruction of sea surface temperature (SST) from 1578 to 2008, based on a Porites coral Sr/Ca record from the northern Ryukyus, within the Kuroshio southern recirculation gyre. Interannual SST anomalies are generally 0.5°C, making Sr/Ca-derived SST reconstructions a challenging task. Replicate measurements along adjacent coral growth axes, enabled by the laser ablation inductively coupled plasma mass spectrometry technique used here, give evidence of rather large uncertainties. Nonetheless, derived winter SST anomalies are significantly correlated with the Western Pacific atmospheric pattern which has a dominant influence on winter temperature in East Asia. Annual mean SSTs show interdecadal variations, notably cold intervals between 1670 and 1700 during the Maunder Minimum (MM) and between 1766 and 1788 characterized by a negative phase of the North Atlantic Oscillation. Cold summers in 1783 and 1784 coincide with the long-lasting Laki eruption that had a profound impact on the Northern Hemisphere climate, including the severe "Tenmei" famine in Japan. The decades between 1855 and 1900 are significantly cooler than the first half of the twentieth century, while those between 1700 and 1765, following the MM, are warmer than average. SST variability in the Ryukyus is only marginally influenced by the Pacific Decadal Oscillation, so that external forcing remains the main driver of low-frequency temperature changes. However, the close connection between the Kuroshio extension (KE) and its recirculation gyre suggests that decadal SST anomalies associated with the KE front also impact the Ryukyus, and there is a possible additional role for feedback of the Kuroshio-Oyashio variability to the large-scale atmosphere at decadal timescale.

A Tropical View of Atlantic Multidecadal SST Variability over the Last Two Millennia

NASA Astrophysics Data System (ADS)

Wurtzel, J. B.; Black, D. E.; Thunell, R.; Peterson, L. C.; Tappa, E. J.; Rahman, S.

2011-12-01

Instrumental and proxy-reconstructions show the existence of a 60-80 year periodicity in Atlantic sea surface temperature (SST), known as the Atlantic Multidecadal Oscillation (AMO). The AMO is correlated with circum-tropical Atlantic climate phenomena such as Sahel and Nordeste rainfall, as well as Atlantic hurricane patterns. Though it has been suggested that the AMO is controlled by thermohaline circulation, much debate exists as to whether the SST fluctuations are a result of anthropogenic forcing or natural climate variability. Our ability to address this issue has been limited by instrumental SST records that rarely extend back more than 50-100 years and proxy reconstructions that are largely terrestrial-based. Here we present a high-resolution marine sediment-derived reconstruction of seasonal tropical Atlantic SSTs from the Cariaco Basin spanning the past two millennia that is correlated with instrumental SSTs and the AMO for the period of overlap. The full record demonstrates that seasonality is largely controlled by variations in winter/spring SST. Wavelet analysis of the proxy data suggest that variability in the 60-80 year band evolved 250 years ago, while 40-60 year periodicities dominate earlier parts of the record. At least over the last millennia, multidecadal- and centennial- scale SST variability in the tropical Atlantic appears related to Atlantic meridional overturning circulation (AMOC) fluctuations and its associated northward heat transport that in turn may be driven by solar variability. An inverse correlation between the tropical proxy annual average SST record and Δ14C indicates that the tropics experienced positive SST anomalies during times of reduced solar activity, possibly as a result of decreased AMOC strength (Figure 1).

Isobaric Reconstruction of the Baryonic Acoustic Oscillation

NASA Astrophysics Data System (ADS)

Wang, Xin; Yu, Hao-Ran; Zhu, Hong-Ming; Yu, Yu; Pan, Qiaoyin; Pen, Ue-Li

2017-06-01

In this Letter, we report a significant recovery of the linear baryonic acoustic oscillation (BAO) signature by applying the isobaric reconstruction algorithm to the nonlinear matter density field. Assuming only the longitudinal component of the displacement being cosmologically relevant, this algorithm iteratively solves the coordinate transform between the Lagrangian and Eulerian frames without requiring any specific knowledge of the dynamics. For dark matter field, it produces the nonlinear displacement potential with very high fidelity. The reconstruction error at the pixel level is within a few percent and is caused only by the emergence of the transverse component after the shell-crossing. As it circumvents the strongest nonlinearity of the density evolution, the reconstructed field is well described by linear theory and immune from the bulk-flow smearing of the BAO signature. Therefore, this algorithm could significantly improve the measurement accuracy of the sound horizon scale s. For a perfect large-scale structure survey at redshift zero without Poisson or instrumental noise, the fractional error {{Δ }}s/s is reduced by a factor of ˜2.7, very close to the ideal limit with the linear power spectrum and Gaussian covariance matrix.

Multi-Depth-Map Raytracing for Efficient Large-Scene Reconstruction.

PubMed

Arikan, Murat; Preiner, Reinhold; Wimmer, Michael

2016-02-01

With the enormous advances of the acquisition technology over the last years, fast processing and high-quality visualization of large point clouds have gained increasing attention. Commonly, a mesh surface is reconstructed from the point cloud and a high-resolution texture is generated over the mesh from the images taken at the site to represent surface materials. However, this global reconstruction and texturing approach becomes impractical with increasing data sizes. Recently, due to its potential for scalability and extensibility, a method for texturing a set of depth maps in a preprocessing and stitching them at runtime has been proposed to represent large scenes. However, the rendering performance of this method is strongly dependent on the number of depth maps and their resolution. Moreover, for the proposed scene representation, every single depth map has to be textured by the images, which in practice heavily increases processing costs. In this paper, we present a novel method to break these dependencies by introducing an efficient raytracing of multiple depth maps. In a preprocessing phase, we first generate high-resolution textured depth maps by rendering the input points from image cameras and then perform a graph-cut based optimization to assign a small subset of these points to the images. At runtime, we use the resulting point-to-image assignments (1) to identify for each view ray which depth map contains the closest ray-surface intersection and (2) to efficiently compute this intersection point. The resulting algorithm accelerates both the texturing and the rendering of the depth maps by an order of magnitude.

Fullerene/layered antiferromagnetic reconstructed spinterface: Subsurface layer dominates molecular orbitals' spin-split and large induced magnetic moment

NASA Astrophysics Data System (ADS)

Shao, Yangfan; Pang, Rui; Pan, Hui; Shi, Xingqiang

2018-03-01

The interfaces between organic molecules and magnetic metals have gained increasing interest for both fundamental reasons and applications. Among them, the C60/layered antiferromagnetic (AFM) interfaces have been studied only for C60 bonded to the outermost ferromagnetic layer [S. L. Kawahara et al., Nano Lett. 12, 4558 (2012) and D. Li et al., Phys. Rev. B 93, 085425 (2016)]. Here, via density functional theory calculations combined with evidence from the literature, we demonstrate that C60 adsorption can reconstruct the layered-AFM Cr(001) surface at elevated annealing temperatures so that C60 bonds to both the outermost and the subsurface Cr layers in opposite spin directions. Surface reconstruction drastically changes the adsorbed molecule spintronic properties: (1) the spin-split p-d hybridization involves multi-orbitals of C60 and top two layers of Cr with opposite spin-polarization, (2) the subsurface Cr atom dominates the C60 electronic properties, and (3) the reconstruction induces a large magnetic moment of 0.58 μB in C60 as a synergistic effect of the top two Cr layers. The induced magnetic moment in C60 can be explained by the magnetic direct-exchange mechanism, which can be generalized to other C60/magnetic metal systems. Understanding these complex hybridization behaviors is a crucial step for molecular spintronic applications.

A fresh look at the Last Glacial Maximum using Paleoclimate Data Assimilation

NASA Astrophysics Data System (ADS)

Malevich, S. B.; Tierney, J. E.; Hakim, G. J.; Tardif, R.

2017-12-01

Quantifying climate conditions during the Last Glacial Maximum ( 21ka) can help us to understand climate responses to forcing and climate states that are poorly represented in the instrumental record. Paleoclimate proxies may be used to estimate these climate conditions, but proxies are sparsely distributed and possess uncertainties from environmental and biogeochemical processes. Alternatively, climate model simulations provide a full-field view, but may predict unrealistic climate states or states not faithful to proxy records. Here, we use data assimilation - combining climate proxy records with a theoretical understanding from climate models - to produce field reconstructions of the LGM that leverage the information from both data and models. To date, data assimilation has mainly been used to produce reconstructions of climate fields through the last millennium. We expand this approach in order to produce a climate fields for the Last Glacial Maximum using an ensemble Kalman filter assimilation. Ensemble samples were formed from output from multiple models including CCSM3, CESM2.1, and HadCM3. These model simulations are combined with marine sediment proxies for upper ocean temperature (TEX86, UK'37, Mg/Ca and δ18O of foraminifera), utilizing forward models based on a newly developed suite of Bayesian proxy system models. We also incorporate age model and radiocarbon reservoir uncertainty into our reconstructions using Bayesian age modeling software. The resulting fields show familiar patterns based on comparison with previous proxy-based reconstructions, but additionally reveal novel patterns of large-scale shifts in ocean-atmosphere dynamics, as the surface temperature data inform upon atmospheric circulation and precipitation patterns.

Momentum-resolved hidden-order gap reveals symmetry breaking and origin of entropy loss in URu2Si2

NASA Astrophysics Data System (ADS)

Bareille, C.; Boariu, F. L.; Schwab, H.; Lejay, P.; Reinert, F.; Santander-Syro, A. F.

2014-07-01

Spontaneous symmetry breaking in physical systems leads to salient phenomena at all scales, from the Higgs mechanism and the emergence of the mass of the elementary particles, to superconductivity and magnetism in solids. The hidden-order state arising below 17.5 K in URu2Si2 is a puzzling example of one of such phase transitions: its associated broken symmetry and gap structure have remained longstanding riddles. Here we directly image how, across the hidden-order transition, the electronic structure of URu2Si2 abruptly reconstructs. We observe an energy gap of 7 meV opening over 70% of a large diamond-like heavy-fermion Fermi surface, resulting in the formation of four small Fermi petals, and a change in the electronic periodicity from body-centred tetragonal to simple tetragonal. Our results explain the large entropy loss in the hidden-order phase, and the similarity between this phase and the high-pressure antiferromagnetic phase found in quantum-oscillation experiments.

Realizing Large-Scale, Electronic-Grade Two-Dimensional Semiconductors.

PubMed

Lin, Yu-Chuan; Jariwala, Bhakti; Bersch, Brian M; Xu, Ke; Nie, Yifan; Wang, Baoming; Eichfeld, Sarah M; Zhang, Xiaotian; Choudhury, Tanushree H; Pan, Yi; Addou, Rafik; Smyth, Christopher M; Li, Jun; Zhang, Kehao; Haque, M Aman; Fölsch, Stefan; Feenstra, Randall M; Wallace, Robert M; Cho, Kyeongjae; Fullerton-Shirey, Susan K; Redwing, Joan M; Robinson, Joshua A

2018-02-27

Atomically thin transition metal dichalcogenides (TMDs) are of interest for next-generation electronics and optoelectronics. Here, we demonstrate device-ready synthetic tungsten diselenide (WSe 2 ) via metal-organic chemical vapor deposition and provide key insights into the phenomena that control the properties of large-area, epitaxial TMDs. When epitaxy is achieved, the sapphire surface reconstructs, leading to strong 2D/3D (i.e., TMD/substrate) interactions that impact carrier transport. Furthermore, we demonstrate that substrate step edges are a major source of carrier doping and scattering. Even with 2D/3D coupling, transistors utilizing transfer-free epitaxial WSe 2 /sapphire exhibit ambipolar behavior with excellent on/off ratios (∼10 7 ), high current density (1-10 μA·μm -1 ), and good field-effect transistor mobility (∼30 cm 2 ·V -1 ·s -1 ) at room temperature. This work establishes that realization of electronic-grade epitaxial TMDs must consider the impact of the TMD precursors, substrate, and the 2D/3D interface as leading factors in electronic performance.

The 3D geological model of the 1963 Vajont rockslide, reconstructed with implicit surface methods

NASA Astrophysics Data System (ADS)

Bistacchi, Andrea; Massironi, Matteo; Francese, Roberto; Giorgi, Massimo; Taller, Claudio

2015-04-01

The Vajont rockslide has been the object of several studies because of its catastrophic consequences and of its particular evolution. Several qualitative or quantitative models have been presented in the last 50 years, but a complete explanation of all the relevant geological and mechanical processes remains elusive. In order to better understand the mechanics and dynamics of the 1963 event, we have reconstructed the first 3D geological model of the rockslide, which allowed us to accurately investigate the rockslide structure and kinematics. The input data for the model consisted in: pre- and post-rockslide geological maps, pre- and post-rockslide orthophotos, pre- and post-rockslide digital elevation models, structural data, boreholes, and geophysical data (2D and 3D seismics and resistivity). All these data have been integrated in a 3D geological model implemented in Gocad®, using the implicit surface modelling method. Results of the 3D geological model include the depth and geometry of the sliding surface, the volume of the two lobes of the rockslide accumulation, kinematics of the rockslide in terms of the vector field of finite displacement, and high quality meshes useful for mechanical and hydrogeological simulations. The latter can include information about the stratigraphy and internal structure of the rock masses and allow tracing the displacement of different material points in the rockslide from the pre-1963-failure to the post-rockslide state. As a general geological conclusion, we may say that the 3D model allowed us to recognize very effectively a sliding surface, whose non-planar geometry is affected by the interference pattern of two regional-scale fold systems. The rockslide is partitioned into two distinct and internally continuous rock masses with a distinct kinematics, which were characterised by a very limited internal deformation during the slide. The continuity of these two large blocks points to a very localized deformation, occurring along a thin, continuous and weak cataclastic horizon. Finally, the chosen modelling strategy, based on both traditional "explicit" and implicit techniques, was found to be very effective for reconstructing complex folded and faulted geological structures, and could be applied also to other geological environments.

Stabilization of Au Monatomic-High Islands on the (2 ×2 )-Nad Reconstructed Surface of Wurtzite AlN(0001)

NASA Astrophysics Data System (ADS)

Eydoux, Benoit; Baris, Bulent; Khoussa, Hassan; Guillermet, Olivier; Gauthier, Sébastien; Bouju, Xavier; Martrou, David

2017-10-01

Noncontact atomic force microscopy images show that gold grows on the (2 ×2 )-Nad reconstructed polar (0001) surface of AlN insulating films, in the form of large monatomic islands. High-resolution images and in situ reflection high-energy electron diffraction spectra reveal two moiré patterns from which an atomic model can be built. Density functional theory calculations confirm this model and give insight into the mechanisms that lead to the stabilization of the monolayer. Gold adsorption is accompanied, first, by a global vertical charge transfer from the AlN substrate that fulfills the electrostatic stability criterion for a polar material, and second, by lateral charge transfers that are driven by the local chemical properties of the (2 ×2 )-Nad reconstruction. These results present alternative strategies to grow metal electrodes onto nitride compounds with a better controlled interface, a crucial issue for applications.

The impact of land-surface wetness heterogeneity on mesoscale heat fluxes

NASA Technical Reports Server (NTRS)

Chen, Fei; Avissar, Roni

1994-01-01

Vertical heat fluxes associated with mesoscale circulations generated by land-surface wetness discontinuities are often stronger than turbulent fluxes, especially in the upper part of the atmospheric planetary boundary layer. As a result, they contribute significantly to the subgrid-scale fluxes in large-scale atmospheric models. Yet they are not considered in these models. To provide some insights into the possible parameterization of these fluxes in large-scale models, a state-of-the-art mesoscale numerical model was used to investigate the relationships between mesoscale heat fluxes and atmospheric and land-surface characteristics that play a key role in the generation of mesoscale circulations. The distribution of land-surface wetness, the wavenumber and the wavelength of the land-surface discontinuities, and the large-scale wind speed have a significant impact on the mesoscale heat fluxes. Empirical functions were derived to characterize the relationships between mesoscale heat fluxes and the spatial distribution of land-surface wetness. The strongest mesoscale heat fluxes were obtained for a wavelength of forcing corresponding approximately to the local Rossby deformation radius. The mesoscale heat fluxes are weakened by large-scale background winds but remain significant even with moderate winds.

Transformation of social networks in the late pre-Hispanic US Southwest.

PubMed

Mills, Barbara J; Clark, Jeffery J; Peeples, Matthew A; Haas, W R; Roberts, John M; Hill, J Brett; Huntley, Deborah L; Borck, Lewis; Breiger, Ronald L; Clauset, Aaron; Shackley, M Steven

2013-04-09

The late pre-Hispanic period in the US Southwest (A.D. 1200-1450) was characterized by large-scale demographic changes, including long-distance migration and population aggregation. To reconstruct how these processes reshaped social networks, we compiled a comprehensive artifact database from major sites dating to this interval in the western Southwest. We combine social network analysis with geographic information systems approaches to reconstruct network dynamics over 250 y. We show how social networks were transformed across the region at previously undocumented spatial, temporal, and social scales. Using well-dated decorated ceramics, we track changes in network topology at 50-y intervals to show a dramatic shift in network density and settlement centrality from the northern to the southern Southwest after A.D. 1300. Both obsidian sourcing and ceramic data demonstrate that long-distance network relationships also shifted from north to south after migration. Surprisingly, social distance does not always correlate with spatial distance because of the presence of network relationships spanning long geographic distances. Our research shows how a large network in the southern Southwest grew and then collapsed, whereas networks became more fragmented in the northern Southwest but persisted. The study also illustrates how formal social network analysis may be applied to large-scale databases of material culture to illustrate multigenerational changes in network structure.

Transformation of social networks in the late pre-Hispanic US Southwest

PubMed Central

Mills, Barbara J.; Clark, Jeffery J.; Peeples, Matthew A.; Haas, W. R.; Roberts, John M.; Hill, J. Brett; Huntley, Deborah L.; Borck, Lewis; Breiger, Ronald L.; Clauset, Aaron; Shackley, M. Steven

2013-01-01

The late pre-Hispanic period in the US Southwest (A.D. 1200–1450) was characterized by large-scale demographic changes, including long-distance migration and population aggregation. To reconstruct how these processes reshaped social networks, we compiled a comprehensive artifact database from major sites dating to this interval in the western Southwest. We combine social network analysis with geographic information systems approaches to reconstruct network dynamics over 250 y. We show how social networks were transformed across the region at previously undocumented spatial, temporal, and social scales. Using well-dated decorated ceramics, we track changes in network topology at 50-y intervals to show a dramatic shift in network density and settlement centrality from the northern to the southern Southwest after A.D. 1300. Both obsidian sourcing and ceramic data demonstrate that long-distance network relationships also shifted from north to south after migration. Surprisingly, social distance does not always correlate with spatial distance because of the presence of network relationships spanning long geographic distances. Our research shows how a large network in the southern Southwest grew and then collapsed, whereas networks became more fragmented in the northern Southwest but persisted. The study also illustrates how formal social network analysis may be applied to large-scale databases of material culture to illustrate multigenerational changes in network structure. PMID:23530201

Anisotropic in-plane thermal conductivity in multilayer silicene

NASA Astrophysics Data System (ADS)

Zhou, Yang; Guo, Zhi-Xin; Chen, Shi-You; Xiang, Hong-Jun; Gong, Xin-Gao

2018-06-01

We systematically study thermal conductivity of multilayer silicene by means of Boltzmann Transportation Equation (BTE) method. We find that their thermal conductivity strongly depends on the surface structures. Thermal conductivity of bilayer silicene varies from 3.31 W/mK to 57.9 W/mK with different surface structures. Also, the 2 × 1 surface reconstruction induces unusual large thermal conductivity anisotropy, which reaches 70% in a four-layer silicene. We also find that the anisotropy decreases with silicene thickness increasing, owing to the significant reduction of thermal conductivity in the zigzag direction and its slight increment in the armchair direction. Finally, we find that both the phonon-lifetime anisotropy and the phonon-group-velocity anisotropy contribute to the thermal conductivity anisotropy of multilayer silicene. These findings could be helpful in the field of heat management, thermoelectric applications involving silicene and other multilayer nanomaterials with surface reconstructions in the future.

Development of optimal grinding and polishing tools for aspheric surfaces

NASA Astrophysics Data System (ADS)

Burge, James H.; Anderson, Bill; Benjamin, Scott; Cho, Myung K.; Smith, Koby Z.; Valente, Martin J.

2001-12-01

The ability to grind and polish steep aspheric surfaces to high quality is limited by the tools used for working the surface. The optician prefers to use large, stiff tools to get good natural smoothing, avoiding small scale surface errors. This is difficult for steep aspheres because the tools must have sufficient compliance to fit the aspheric surface, yet we wish the tools to be stiff so they wear down high regions on the surface. This paper presents a toolkit for designing optimal tools that provide large scale compliance to fit the aspheric surface, yet maintain small scale stiffness for efficient polishing.

First characterisation of the "Rumi-Pana" rock avalanche deposits (Famatina Range, La Rioja, Argentina)

NASA Astrophysics Data System (ADS)

Santiago Pullarello, José; Derron, Marc-Henri; Penna, Ivanna; Leiva, Alicia; Jaboyadoff, Michel

2017-04-01

Active mountain fronts are subject to large scale slope collapses which have the capacity to run long distances on piedmont areas. Along time, fluvial activity and other gravitatory processes can intensively erode and mask primary features related to the collapses. Therefore, to reconstruct the history of their occurrence, further analyses are needed, e.g. sedimentologic analyses. This work focuses on the occurrence of large rock avalanches in the Vinchina region, La Rioja (28°43'27.81'' S / 68°00'25.42'' W) on the western side of the Famatina range(Argentina). Here, photointerpretation of high resolution satellite images (Google Earth) allowed us to identify two rock avalanches, main scarps developed at 2575 and 2750 m a.s.l. . There are no absolute ages for these deposits, however, comparing their preservation degree with those dated further north (in similar climatic and landscape dynamics contexts [i]), we can suggest these rock avalanches took place during the Pleistocene. We carried out a fieldwork survey in this remote area, including classical landslide mapping, structural analysis, deposits characterization and sampling. The deposits reach the valley bottom (at around 1700 m a.s.l.) with runouts about 5 and 5.3 km long. In one of the cases, the morphology of the deposit is well preserved, allowing to reconstruct accurately its extension. However, in the second case, the deposits are strongly eroded by courses draining the mountain front, therefore further analyses should be done to reconstruct its extension. In addition to morphologic interpretations, a multiscale grain-size analysis was done to differentiate rock avalanches from other hillslope deposits: (1) 3D surface models of surface plots (5x5m) have been built by SfM photogrammetry; 2) classical sieving and 3) laser grain-size analysis of deposits. Samples were collected on different parts of the slope, but also along cross sections through the avalanche deposit. This deposits characterization will be combined with results from mapping and image analysis in order to provide a first description of the sequence and extension of events related to the evolution of this mountain front. [i] Hermanns et Strecker, Structural and lithological controls on large Quaternary rock avalanches (sturzstroms) in arid northwestern Argentina, Geological Society of America Bulletin 1999.

Validation and reconstruction of FY-3B/MWRI soil moisture using an artificial neural network based on reconstructed MODIS optical products over the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Cui, Yaokui; Long, Di; Hong, Yang; Zeng, Chao; Zhou, Jie; Han, Zhongying; Liu, Ronghua; Wan, Wei

2016-12-01

Soil moisture is a key variable in the exchange of water and energy between the land surface and the atmosphere, especially over the Tibetan Plateau (TP) which is climatically and hydrologically sensitive as the Earth's 'third pole'. Large-scale spatially consistent and temporally continuous soil moisture datasets are of great importance to meteorological and hydrological applications, such as weather forecasting and drought monitoring. The Fengyun-3B Microwave Radiation Imager (FY-3B/MWRI) soil moisture product is a relatively new passive microwave product, with the satellite being launched on November 5, 2010. This study validates and reconstructs FY-3B/MWRI soil moisture across the TP. First, the validation is performed using in situ measurements within two in situ soil moisture measurement networks (1° × 1° and 0.25° × 0.25°), and also compared with the Essential Climate Variable (ECV) soil moisture product from multiple active and passive satellite soil moisture products using new merging procedures. Results show that the ascending FY-3B/MWRI product outperforms the descending product. The ascending FY-3B/MWRI product has almost the same correlation as the ECV product with the in situ measurements. The ascending FY-3B/MWRI product has better performance than the ECV product in the frozen season and under the lower NDVI condition. When the NDVI is higher in the unfrozen season, uncertainty in the ascending FY-3B/MWRI product increases with increasing NDVI, but it could still capture the variability in soil moisture. Second, the FY-3B/MWRI soil moisture product is subsequently reconstructed using the back-propagation neural network (BP-NN) based on reconstructed MODIS products, i.e., LST, NDVI, and albedo. The reconstruction method of generating the soil moisture product not only considers the relationship between the soil moisture and NDVI, LST, and albedo, but also the relationship between the soil moisture and four-dimensional variations using the longitude, latitude, DEM and day of year (DOY). Results show that the soil moisture could be well reconstructed with R2 higher than 0.56, RMSE less than 0.1 cm3 cm-3, and Bias less than 0.07 cm3 cm-3 for both frozen and unfrozen seasons, compared with the in situ measurements at the two networks. Third, the reconstruction method is applied to generate surface soil moisture over the TP. Both original and reconstructed FY-3B/MWRI soil moisture products could be valuable in studying meteorology, hydrology, and ecosystems over the TP.

Sodium-cutting: a new top-down approach to cut open nanostructures on nonplanar surfaces on a large scale.

PubMed

Chen, Wei; Deng, Da

2014-11-11

We report a new, low-cost and simple top-down approach, "sodium-cutting", to cut and open nanostructures deposited on a nonplanar surface on a large scale. The feasibility of sodium-cutting was demonstrated with the successfully cutting open of ∼100% carbon nanospheres into nanobowls on a large scale from Sn@C nanospheres for the first time.

Composition and structure of surfaces by time-of-flight scattering and recoiling spectrometry (TOF-SARS)

NASA Astrophysics Data System (ADS)

Ahn, Jeongheon

1997-10-01

Time-of-flight scattering and recoiling spectrometry (TOF-SARS) was applied to characterize surface structures in order to understand the chemical and physical phenomena on various surfaces. The combination of TOF-SARS, LEED, and classical ion trajectory simulations has allowed characterization of the elemental composition in the outermost atomic layers, surface symmetry, and possible reconstruction or relaxation. The composition and structure of the CdS\\{0001\\}-(1 x 1) and CdS\\{000bar1\\}-(1 x 1) surfaces were investigated. The termination layer of each surface was determined by grazing incidence TOF-SARS. Both (1 x 1) surfaces are bulk-terminated without any reconstruction or relaxation detected by TOF-SARS. Each surface has two domains which are rotated by 60sp° from each other and there exist steps on both surfaces. The CdS\\{0001\\}-(1 x 1) surface is stabilized by O and H covering half a monolayer which are structurally ordered on the surface, while the O and H on the CdS\\{000bar1\\}-(1 x 1) stabilize the surface without ordering. The study of GaN\\{000bar1\\}-(1 x 1) shows the bulk-termination of the surface with no detectable reconstruction or relaxation. The surface is terminated in a N layer with Ga in the 2sp{nd}-layer. H atoms are bound to the outermost N atoms with a coverage of ˜3/4 monolayer and protrude outward from the surface. The surface termination, composition and structure of the Alsb2Osb3 (sapphire) were examined. The surface relaxation was studied quantitatively using classical ion trajectory simulations along with TOF-SARS. The surface undergoes 1sp{st}{-}2sp{nd}-layer relaxation as large as 0.5 A from the bulk value resulting in near coplanarity of Al and O atoms. The reconstruction of the Ni\\{100\\}-(2 x 2)-C surface was studied by TOF-SARS. The surface contained 80% of the (2 x 2)p4g phase and 20% of the unreconstructed (2 x 2) phase. The displacement of Ni atoms was determined by comparing the experimental and simulated results.

Boreal spring precipitation variability in the cold arid western Himalaya during the last millennium, regional linkages, and socio-economic implications

NASA Astrophysics Data System (ADS)

Yadava, Akhilesh K.; Bräuning, Achim; Singh, Jayendra; Yadav, Ram R.

2016-07-01

Precipitation in the monsoon shadow zone of the western Himalayan region, largely under the influence of mid-latitude westerlies, is the dominant regional socioeconomic driver. Current knowledge of long-term regional precipitation variability is scarce due to spatially and temporally limited weather and high-resolution proxy climate records. We developed the first boreal spring precipitation reconstruction for the western Himalaya covering the last millennium (1030-2011 C.E.). The annually resolved reconstruction is based on a large tree-ring data set of Himalayan cedar (Cedrus deodara) and neoza pine (Pinus gerardiana) from 16 ecologically homogeneous moisture stressed settings in Kinnaur, western Indian Himalaya. The precipitation reconstruction revealed persistent long-term spring droughts from the 12th to early 16th century C.E. and pluvial from the late 16th century C.E. to recent decades. The late 15th and early 16th centuries (1490-1514 C.E.) displayed the driest episode, with precipitation being ∼15% lower than the long-term mean. The early 19th century (1820-1844 C.E.) was the wettest period of the past millennium, with mean precipitation ∼13% above the long-term mean. The reconstructed boreal spring precipitation from the western Himalaya revealed large-scale consistency with hydrological records from westerly dominated regions in Central Asia, indicating synoptic-scale changes in atmospheric circulation during the major part of the Medieval and Little Ice Age periods. Protracted droughts in Central Asia could have caused severe contraction of the regional economy, as indicated by striking coherence of reconstructed drought periods and historic social upheavals and invasions of India from Central and Western Asian invaders. Vulnerability to climatic extremes underpins the need to develop a better understanding of the temporal and spatial variability in regional hydroclimate in order to devise viable water resource management plans.

High-performance image reconstruction in fluorescence tomography on desktop computers and graphics hardware.

PubMed

Freiberger, Manuel; Egger, Herbert; Liebmann, Manfred; Scharfetter, Hermann

2011-11-01

Image reconstruction in fluorescence optical tomography is a three-dimensional nonlinear ill-posed problem governed by a system of partial differential equations. In this paper we demonstrate that a combination of state of the art numerical algorithms and a careful hardware optimized implementation allows to solve this large-scale inverse problem in a few seconds on standard desktop PCs with modern graphics hardware. In particular, we present methods to solve not only the forward but also the non-linear inverse problem by massively parallel programming on graphics processors. A comparison of optimized CPU and GPU implementations shows that the reconstruction can be accelerated by factors of about 15 through the use of the graphics hardware without compromising the accuracy in the reconstructed images.

Anatomic Outside-In Reconstruction of the Anterior Cruciate Ligament Using Femoral Fixation with Metallic Interference Screw and Surgical Staples (Agrafe) in the Tibia: An Effective Low-Cost Technique.

PubMed

Diego, Ariel de Lima; Stemberg Martins, de Vasconcelos; Dias, Leite José Alberto; Moreira, Pinto Dilamar; Beltrão, Teixeira Rogério; Coelho, de Léo Álvaro; de Lima, Silveira Leonardo; Krause, Gonçalves Romeu; Carvalho Krause, Gonçalves Marcelo; Carolina Leite, de Vasconcelos Ana; Dias Costa, Filho Carlos Frederico; Lana Lacerda, de Lima

2017-01-01

An anterior cruciate ligament (ACL) rupture is a frequent injury, with short and long-term consequences if left untreated. With a view to benefitting as many patients as possible and preventing future complications, we created a low-cost ligament reconstruction technique. The present article describes an anatomic ACL reconstruction technique. The technique involves single-band reconstruction, using flexors tendon graft, outside-in tunnel perforation, femoral fixation with metal interference screw and surgical staples (Agrafe) in the longitudinal position. We present a simple, easy-to-reproduce technique that, when executed on patients with good bone quality, primarily in the tibia, is effective and inexpensive, favoring its large scale application.

Anatomic Outside-In Reconstruction of the Anterior Cruciate Ligament Using Femoral Fixation with Metallic Interference Screw and Surgical Staples (Agrafe) in the Tibia: An Effective Low-Cost Technique

PubMed Central

Diego, Ariel de Lima; Stemberg Martins, de Vasconcelos,; Dias, Leite, José Alberto; Moreira, Pinto, Dilamar; Beltrão, Teixeira, Rogério; Coelho, de Léo, Álvaro; de Lima, Silveira, Leonardo; Krause, Gonçalves, Romeu; Carvalho Krause, Gonçalves, Marcelo; Carolina Leite, de Vasconcelos, Ana; Dias Costa, Filho, Carlos Frederico; Lana Lacerda, de Lima,

2017-01-01

Background: An anterior cruciate ligament (ACL) rupture is a frequent injury, with short and long-term consequences if left untreated. With a view to benefitting as many patients as possible and preventing future complications, we created a low-cost ligament reconstruction technique. Method: The present article describes an anatomic ACL reconstruction technique. Results: The technique involves single-band reconstruction, using flexors tendon graft, outside-in tunnel perforation, femoral fixation with metal interference screw and surgical staples (Agrafe) in the longitudinal position. Conclusion: We present a simple, easy-to-reproduce technique that, when executed on patients with good bone quality, primarily in the tibia, is effective and inexpensive, favoring its large scale application. PMID:29290851

Investigation of decadal-scale divergence in tree-ring density chronologies

NASA Astrophysics Data System (ADS)

Vaccaro, A.; Emile-Geay, J.; Anchukaitis, K. J.; Wang, J.

2013-12-01

Tree-ring data from certain forest sites at northern circumpolar latitudes and from some at higher elevation show an anomalous decrease in temperature-sensitivity of tree growth starting in the mid-20th century. This phenomenon, known as the ';divergence problem' (DP), leads to tree-ring reconstructions that underestimate the warming trend exhibited by instrumental measurements over recent decades (e.g. D'Arrigo et al. 2008). In a study conducted in 1998, Briffa et al. discovered a type of divergence wherein latewood density (MXD) chronologies from an early manifestation of the Schweingruber tree-ring dataset showed strong interannual correlation to summer temperature measurements, but increasing divergence between the decadal-scale trends of the tree-rings and temperature records during the second half of the 20th century. This low-frequency divergence suggests that although tree-rings may accurately trace year-to-year changes in temperature, they might not capture longer-term warming trends, making them unsuitable for reconstructions of long-term climate variations. There is reason to believe, however, that the divergence found by Briffa (1998) is at least partly due to detrending or related statistical issues (Esper et al. 2009). Herein, we will investigate the distribution of this decadal-scale ';Briffa-style' divergence to see if it is confined to the earlier chronologies in the Schweingruber dataset or if it is persistent throughout more recent tree-ring data as well. Following the methodology of previous DP investigations (e.g. Briffa et al. 1998), we will draw comparisons between a network of MXD data and instrumental temperature records over an early period (1850-1960) and a recent period (1961-2000) to detect decadal-scale divergence in recent decades. We will apply the Mann et al. 2009 (M09) style of RegEM reconstruction to the M09 dataset, with and without controlling for divergence, and also to a new tree-ring database assembled using strict, objective criteria, including most of the updated Schweingruber network. Other climate field reconstruction (CFR) methods as described by Wang et al. (2013) will be used on our new tree-ring network to check for robustness. The tree-ring data will be independently compared to instrumental temperature series derived from the GHCN-monthly, HadCRUT4, and the M09 infilled HadCRUT3v temperature datasets for cross-validation. Implications for large-scale temperature reconstructions of the Common Era will be discussed. Briffa, K.R., F. H. Schweingruber, P.D. Jones, T.J. Osborn, S.G. Shiyatov, and E.A. Vaganov (1998),Reduced sensitivity of recent tree-growth to temperature at high northern latitudes, Nature, 391, 678-682. D'Arrigo, R., R. Wilson, B. Liepert, and P. Cherubini (2008), On the ';Divergence Problem' in Northern Forests: A review of the tree-ring evidence and possible causes, GAPC, 60, 289-305. Esper, J. and D. Frank (2009), Divergence pitfalls in tree-ring research, Climate Change, 94, 261-266. Mann, M.E., Z. Zhang, M.K. Hughes, R.S. Bradley, S.K. Miller, S. Rutherford, and F. Ni (2009), Proxy-based reconstructions of hemispheric and global surface temperature variations over the past two millennia, PNAS, 105 (36) 13252-13257. Wang, J., J. Emile-Geay, D. Guillot, and J. E. Smerdon (2013), Evaluating climate field reconstruction techniques using improved emulations of real-world conditions. CPD, 9, 3015-3060.

Helical image reconstruction of the outward-open human erythrocyte band 3 membrane domain in tubular crystals.

PubMed

Yamaguchi, Tomohiro; Fujii, Takashi; Abe, Yoshito; Hirai, Teruhisa; Kang, Dongchon; Namba, Keiichi; Hamasaki, Naotaka; Mitsuoka, Kaoru

2010-03-01

The C-terminal membrane domain of erythrocyte band 3 functions as an anion exchanger. Here, we report the three-dimensional (3D) structure of the membrane domain in an inhibitor-stabilized, outward-open conformation at 18A resolution. Unstained, frozen-hydrated tubular crystals containing the membrane domain of band 3 purified from human red blood cells (hB3MD) were examined using cryo-electron microscopy and iterative helical real-space reconstruction (IHRSR). The 3D image reconstruction of the tubular crystals showed the molecular packing of hB3MD dimers with dimensions of 60 x 110 A in the membrane plane and a thickness of 70A across the membrane. Immunoelectron microscopy and carboxyl-terminal digestion demonstrated that the intracellular surface of hB3MD was exposed on the outer surface of the tubular crystal. A 3D density map revealed that hB3MD consists of at least two subdomains and that the outward-open form is characterized by a large hollow area on the extracellular surface and continuous density on the intracellular surface. (c) 2009 Elsevier Inc. All rights reserved.

Nasoseptal flap for palatal reconstruction after hemi-maxillectomy: case report.

PubMed

Alwashahi, M K; Battaglia, P; Turri-Zanoni, M; Castelnuovo, P

2018-01-01

Palatal reconstruction following maxillectomy is a surgical challenge, and a nasoseptal flap is a feasible approach. This paper reports the first known successful clinical case of a nasoseptal pedicle flap applied for the reconstruction of maxillary bone following hemi-maxillectomy. This report describes hemi-maxillectomy in a 60-year-old Italian male diagnosed with stage IV squamous cell carcinoma of the left maxilla. Endoscopic transnasal extended medial maxillectomy was performed, followed by a transoral modified midfacial degloving technique for removal of the maxillary bone. The contralateral nasoseptal pedicle flap was used to reconstruct the defect. The case was followed up prospectively for the assessment of flap reception and healing. The locally accessible nasoseptal flap is a viable alternative for palatal reconstruction; therefore, a second surgical procedure with its associated donor site morbidity can be avoided. Large-scale studies may help in establishing the cosmetic and functional outcomes.

High-resolution wavefront reconstruction using the frozen flow hypothesis

NASA Astrophysics Data System (ADS)

Liu, Xuewen; Liang, Yonghui; Liu, Jin; Xu, Jieping

2017-10-01

This paper describes an approach to reconstructing wavefronts on finer grid using the frozen flow hypothesis (FFH), which exploits spatial and temporal correlations between consecutive wavefront sensor (WFS) frames. Under the assumption of FFH, slope data from WFS can be connected to a finer, composite slope grid using translation and down sampling, and elements in transformation matrices are determined by wind information. Frames of slopes are then combined and slopes on finer grid are reconstructed by solving a sparse, large-scale, ill-posed least squares problem. By using reconstructed finer slope data and adopting Fried geometry of WFS, high-resolution wavefronts are then reconstructed. The results show that this method is robust even with detector noise and wind information inaccuracy, and under bad seeing conditions, high-frequency information in wavefronts can be recovered more accurately compared with when correlations in WFS frames are ignored.

Investigation of Long-Term Impacts of Urbanization when Considering Global Warming for a Coastal Tropical Region

NASA Technical Reports Server (NTRS)

Gonalez, Jorge E.; Comarazamy, Daniel E.; Luvall, Jeffrey C.; Rickman, Douglas L.; Smith, T.

2010-01-01

The overachieving goal of this project is to gain a better understanding of the climate impacts caused by the combined effects of land cover and land use (LCLU) changes and increasing global concentrations of green house gases (GHG) in tropical coastal areas, regions where global, regional and local climate phenomena converge, taking as the test case the densely populated northeast region of the Caribbean island of Puerto Rico. The research uses an integrated approach of high-resolution remote sensing information linked to a high resolution Regional Atmospheric Modeling System (RAMS), which was employed to perform ensembles of climate simulations (combining 2-LCLU and 2-GHG concentration scenarios). Reconstructed agricultural maps are used to define past LCLU, and combined with reconstructed sea surface temperatures (SST) for the same period form the PAST climate scenario (1951-1956); while the PRESENT scenario (2000-2004) was additionally supported by high resolution remote sensing data (10-m-res). The climate reconstruction approach is validated with available observed climate data from surface weather stations for both periods of time simulated. The selection of the past and present climate scenarios considers large-scale biases (i.e. ENSO/NAO) as reflected in the region of interest. Direct and cross comparison of the results is allowing quantifying single, combined, and competitive effects. Results indicate that global GHG have dominant effects on minimum temperatures (following regional tendencies), while urban sprawl dominates maximum temperatures. To further investigate impacts of land use the Bowen Ratio and the thermal response number (TRN) are analyzed. The Bowen ratio indicates that forestation of past agricultural high areas have an overwhelmingly mitigation effect on increasing temperatures observed in different LCLU scenarios, but when abandoned agricultural lands are located in plains, the resulting shrub/grass lands produce higher surface temperatures. The TRN (J/m^2/degC) is a surface property defined as the ratio of the surface net radiation to the rate of change in surface temperature, expresses how those fluxes are reacting to radiant energy inputs. Natural vegetated surfaces have a greater TRN than urban and barren surfaces because the net radiation processed by them is mostly used for latent heat and thermal storage heat rather than sensible heat (heating the air). Significant changes in TRN were observed in the metropolitan area of San Juan for the two analyzed periods reflecting a reduction of this variable in the present from the past consistent with increasing in thermal mass, or intense urbanization.

The algorithm of central axis in surface reconstruction

NASA Astrophysics Data System (ADS)

Zhao, Bao Ping; Zhang, Zheng Mei; Cai Li, Ji; Sun, Da Ming; Cao, Hui Ying; Xing, Bao Liang

2017-09-01

Reverse engineering is an important technique means of product imitation and new product development. Its core technology -- surface reconstruction is the current research for scholars. In the various algorithms of surface reconstruction, using axis reconstruction is a kind of important method. For the various reconstruction, using medial axis algorithm was summarized, pointed out the problems existed in various methods, as well as the place needs to be improved. Also discussed the later surface reconstruction and development of axial direction.

Uncertainties of Large-Scale Forcing Caused by Surface Turbulence Flux Measurements and the Impacts on Cloud Simulations at the ARM SGP Site

NASA Astrophysics Data System (ADS)

Tang, S.; Xie, S.; Tang, Q.; Zhang, Y.

2017-12-01

Two types of instruments, the eddy correlation flux measurement system (ECOR) and the energy balance Bowen ratio system (EBBR), are used at the Atmospheric Radiation Measurement (ARM) program Southern Great Plains (SGP) site to measure surface latent and sensible fluxes. ECOR and EBBR typically sample different land surface types, and the domain-mean surface fluxes derived from ECOR and EBBR are not always consistent. The uncertainties of the surface fluxes will have impacts on the derived large-scale forcing data and further affect the simulations of single-column models (SCM), cloud-resolving models (CRM) and large-eddy simulation models (LES), especially for the shallow-cumulus clouds which are mainly driven by surface forcing. This study aims to quantify the uncertainties of the large-scale forcing caused by surface turbulence flux measurements and investigate the impacts on cloud simulations using long-term observations from the ARM SGP site.

Electrokinetic Energy Conversion in Self-Assembled 2D Nanofluidic Channels with Janus Nanobuilding Blocks.

PubMed

Cheng, Hongfei; Zhou, Yi; Feng, Yaping; Geng, Wenxiao; Liu, Qinfu; Guo, Wei; Jiang, Lei

2017-06-01

Inspired by the microstructure of nacre, material design, and large-scale integration of artificial nanofluidic devices step into a completely new stage, termed 2D nanofluidics, in which mass and charge transportation are confined in the interstitial space between reconstructed 2D nanomaterials. However, all the existing 2D nanofluidic systems are reconstituted from homogeneous nanobuilding blocks. Herein, this paper reports the bottom-up construction of 2D nanofluidic materials with kaolinite-based Janus nanobuilding blocks, and demonstrates two types of electrokinetic energy conversion through the network of 2D nanochannels. Being different from previous 2D nanofluidic systems, two distinct types of sub-nanometer- and nanometer-wide fluidic channels of about 6.8 and 13.8 Å are identified in the reconstructed kaolinite membranes (RKM), showing prominent surface-governed ion transport behaviors and nearly perfect cation-selectivity. The RKMs exhibit superior capability in osmotic and hydraulic energy conversion, compared to graphene-based membranes. The mineral-based 2D nanofluidic system opens up a new avenue to self-assemble asymmetric 2D nanomaterials for energy, environmental, and healthcare applications. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

PET attenuation correction for flexible MRI surface coils in hybrid PET/MRI using a 3D depth camera

NASA Astrophysics Data System (ADS)

Frohwein, Lynn J.; Heß, Mirco; Schlicher, Dominik; Bolwin, Konstantin; Büther, Florian; Jiang, Xiaoyi; Schäfers, Klaus P.

2018-01-01

PET attenuation correction for flexible MRI radio frequency surface coils in hybrid PET/MRI is still a challenging task, as position and shape of these coils conform to large inter-patient variabilities. The purpose of this feasibility study is to develop a novel method for the incorporation of attenuation information about flexible surface coils in PET reconstruction using the Microsoft Kinect V2 depth camera. The depth information is used to determine a dense point cloud of the coil’s surface representing the shape of the coil. From a CT template—acquired once in advance—surface information of the coil is extracted likewise and converted into a point cloud. The two point clouds are then registered using a combination of an iterative-closest-point (ICP) method and a partially rigid registration step. Using the transformation derived through the point clouds, the CT template is warped and thereby adapted to the PET/MRI scan setup. The transformed CT template is converted into an attenuation map from Hounsfield units into linear attenuation coefficients. The resulting fitted attenuation map is then integrated into the MRI-based patient-specific DIXON-based attenuation map of the actual PET/MRI scan. A reconstruction of phantom PET data acquired with the coil present in the field-of-view (FoV), but without the corresponding coil attenuation map, shows large artifacts in regions close to the coil. The overall count loss is determined to be around 13% compared to a PET scan without the coil present in the FoV. A reconstruction using the new μ-map resulted in strongly reduced artifacts as well as increased overall PET intensities with a remaining relative difference of about 1% to a PET scan without the coil in the FoV.

3D skin surface reconstruction from a single image by merging global curvature and local texture using the guided filtering for 3D haptic palpation.

PubMed

Lee, K; Kim, M; Kim, K

2018-05-11

Skin surface evaluation has been studied using various imaging techniques. However, all these studies had limited impact because they were performed using visual exam only. To improve on this scenario with haptic feedback, we propose 3D reconstruction of the skin surface using a single image. Unlike extant 3D skin surface reconstruction algorithms, we utilize the local texture and global curvature regions, combining the results for reconstruction. The first entails the reconstruction of global curvature, achieved by bilateral filtering that removes noise on the surface while maintaining the edge (ie, furrow) to obtain the overall curvature. The second entails the reconstruction of local texture, representing the fine wrinkles of the skin, using an advanced form of bilateral filtering. The final image is then composed by merging the two reconstructed images. We tested the curvature reconstruction part by comparing the resulting curvatures with measured values from real phantom objects while local texture reconstruction was verified by measuring skin surface roughness. Then, we showed the reconstructed result of our proposed algorithm via the reconstruction of various real skin surfaces. The experimental results demonstrate that our approach is a promising technology to reconstruct an accurate skin surface with a single skin image. We proposed 3D skin surface reconstruction using only a single camera. We highlighted the utility of global curvature, which has not been considered important in the past. Thus, we proposed a new method for 3D reconstruction that can be used for 3D haptic palpation, dividing the concepts of local and global regions. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Warm Mediterranean mid-Holocene summers inferred from fossil midge assemblages

NASA Astrophysics Data System (ADS)

Samartin, Stéphanie; Heiri, Oliver; Joos, Fortunat; Renssen, Hans; Franke, Jörg; Brönnimann, Stefan; Tinner, Willy

2017-02-01

Understanding past climate trends is key for reliable projections of global warming and associated risks and hazards. Uncomfortably large discrepancies between vegetation-based summer temperature reconstructions (mainly based on pollen) and climate model results have been reported for the current interglacial, the Holocene. For the Mediterranean region these reconstructions indicate cooler-than-present mid-Holocene summers, in contrast with expectations based on climate models and long-term changes in summer insolation. We present new quantitative and replicated Holocene summer temperature reconstructions based on fossil chironomid midges from the northern central Mediterranean region. The Holocene thermal maximum is reconstructed 9,000-5,000 years ago and estimated to have been 1-2 °C warmer in mean July temperature than the recent pre-industrial period, consistent with glacier and marine records, and with transient climate model runs. This combined evidence implies that widely used pollen-based summer temperature reconstructions in the Mediterranean area are significantly biased by precipitation or other forcings such as early land use. Our interpretation can resolve the previous discrepancy between climate models and quantitative palaeotemperature records for millennial-scale Holocene summer temperature trends in the Mediterranean region. It also suggests that pollen-based evidence for cool mid-Holocene summers in other semi-arid to arid regions of the Northern Hemisphere may have to be reconsidered, with potential implications for global-scale reconstructions.

Reconstruction of halo power spectrum from redshift-space galaxy distribution: cylinder-grouping method and halo exclusion effect

NASA Astrophysics Data System (ADS)

Okumura, Teppei; Takada, Masahiro; More, Surhud; Masaki, Shogo

2017-07-01

The peculiar velocity field measured by redshift-space distortions (RSD) in galaxy surveys provides a unique probe of the growth of large-scale structure. However, systematic effects arise when including satellite galaxies in the clustering analysis. Since satellite galaxies tend to reside in massive haloes with a greater halo bias, the inclusion boosts the clustering power. In addition, virial motions of the satellite galaxies cause a significant suppression of the clustering power due to non-linear RSD effects. We develop a novel method to recover the redshift-space power spectrum of haloes from the observed galaxy distribution by minimizing the contamination of satellite galaxies. The cylinder-grouping method (CGM) we study effectively excludes satellite galaxies from a galaxy sample. However, we find that this technique produces apparent anisotropies in the reconstructed halo distribution over all the scales which mimic RSD. On small scales, the apparent anisotropic clustering is caused by exclusion of haloes within the anisotropic cylinder used by the CGM. On large scales, the misidentification of different haloes in the large-scale structures, aligned along the line of sight, into the same CGM group causes the apparent anisotropic clustering via their cross-correlation with the CGM haloes. We construct an empirical model for the CGM halo power spectrum, which includes correction terms derived using the CGM window function at small scales as well as the linear matter power spectrum multiplied by a simple anisotropic function at large scales. We apply this model to a mock galaxy catalogue at z = 0.5, designed to resemble Sloan Digital Sky Survey-III Baryon Oscillation Spectroscopic Survey (BOSS) CMASS galaxies, and find that our model can predict both the monopole and quadrupole power spectra of the host haloes up to k < 0.5 {{h Mpc^{-1}}} to within 5 per cent.

Adaptive cornea modeling from keratometric data.

PubMed

Martínez-Finkelshtein, Andrei; López, Darío Ramos; Castro, Gracia M; Alió, Jorge L

2011-07-01

To introduce an iterative, multiscale procedure that allows for better reconstruction of the shape of the anterior surface of the cornea from altimetric data collected by a corneal topographer. The report describes, first, an adaptive, multiscale mathematical algorithm for the parsimonious fit of the corneal surface data that adapts the number of functions used in the reconstruction to the conditions of each cornea. The method also implements a dynamic selection of the parameters and the management of noise. Then, several numerical experiments are performed, comparing it with the results obtained by the standard Zernike-based procedure. The numerical experiments showed that the algorithm exhibits steady exponential error decay, independent of the level of aberration of the cornea. The complexity of each anisotropic Gaussian-basis function in the functional representation is the same, but the parameters vary to fit the current scale. This scale is determined only by the residual errors and not by the number of the iteration. Finally, the position and clustering of the centers, as well as the size of the shape parameters, provides additional spatial information about the regions of higher irregularity. The methodology can be used for the real-time reconstruction of both altimetric data and corneal power maps from the data collected by keratoscopes, such as the Placido ring-based topographers, that will be decisive in early detection of corneal diseases such as keratoconus.

Network design and quality checks in automatic orientation of close-range photogrammetric blocks.

PubMed

Dall'Asta, Elisa; Thoeni, Klaus; Santise, Marina; Forlani, Gianfranco; Giacomini, Anna; Roncella, Riccardo

2015-04-03

Due to the recent improvements of automatic measurement procedures in photogrammetry, multi-view 3D reconstruction technologies are becoming a favourite survey tool. Rapidly widening structure-from-motion (SfM) software packages offer significantly easier image processing workflows than traditional photogrammetry packages. However, while most orientation and surface reconstruction strategies will almost always succeed in any given task, estimating the quality of the result is, to some extent, still an open issue. An assessment of the precision and reliability of block orientation is necessary and should be included in every processing pipeline. Such a need was clearly felt from the results of close-range photogrammetric surveys of in situ full-scale and laboratory-scale experiments. In order to study the impact of the block control and the camera network design on the block orientation accuracy, a series of Monte Carlo simulations was performed. Two image block configurations were investigated: a single pseudo-normal strip and a circular highly-convergent block. The influence of surveying and data processing choices, such as the number and accuracy of the ground control points, autofocus and camera calibration was investigated. The research highlights the most significant aspects and processes to be taken into account for adequate in situ and laboratory surveys, when modern SfM software packages are used, and evaluates their effect on the quality of the results of the surface reconstruction.

Constraining Convection Properties with VLTI

NASA Astrophysics Data System (ADS)

Paladini, Claudia

2018-04-01

We recently imaged the stellar surface of the asymptotic giant branch (AGB) star pi1 Gruis using the PIONIER instrument mounted on the Very Large Telescope Interferometer. The three images are very little contaminated by molecular and dust opacity, and show a stellar surface characterized by large convective granulation. In this contribution I will describe the method used to derive the size of the granulation pattern, the challenges of image reconstruction, and our results. I will conclude describing shortly what the next generation of interferometric instruments will bring to our study.

Accurate reconstruction in digital holographic microscopy using antialiasing shift-invariant contourlet transform

NASA Astrophysics Data System (ADS)

Zhang, Xiaolei; Zhang, Xiangchao; Xu, Min; Zhang, Hao; Jiang, Xiangqian

2018-03-01

The measurement of microstructured components is a challenging task in optical engineering. Digital holographic microscopy has attracted intensive attention due to its remarkable capability of measuring complex surfaces. However, speckles arise in the recorded interferometric holograms, and they will degrade the reconstructed wavefronts. Existing speckle removal methods suffer from the problems of frequency aliasing and phase distortions. A reconstruction method based on the antialiasing shift-invariant contourlet transform (ASCT) is developed. Salient edges and corners have sparse representations in the transform domain of ASCT, and speckles can be recognized and removed effectively. As subsampling in the scale and directional filtering schemes is avoided, the problems of frequency aliasing and phase distortions occurring in the conventional multiscale transforms can be effectively overcome, thereby improving the accuracy of wavefront reconstruction. As a result, the proposed method is promising for the digital holographic measurement of complex structures.

Comparing a thermo-mechanical Weichselian Ice Sheet reconstruction to reconstructions based on the sea level equation: aspects of ice configurations and glacial isostatic adjustment

NASA Astrophysics Data System (ADS)

Schmidt, P.; Lund, B.; Näslund, J.-O.; Fastook, J.

2014-05-01

In this study we compare a recent reconstruction of the Weichselian Ice Sheet as simulated by the University of Maine ice sheet model (UMISM) to two reconstructions commonly used in glacial isostatic adjustment (GIA) modelling: ICE-5G and ANU (Australian National University, also known as RSES). The UMISM reconstruction is carried out on a regional scale based on thermo-mechanical modelling, whereas ANU and ICE-5G are global models based on the sea level equation. The three models of the Weichselian Ice Sheet are compared directly in terms of ice volume, extent and thickness, as well as in terms of predicted glacial isostatic adjustment in Fennoscandia. The three reconstructions display significant differences. Whereas UMISM and ANU includes phases of pronounced advance and retreat prior to the last glacial maximum (LGM), the thickness and areal extent of the ICE-5G ice sheet is more or less constant up until the LGM. During the post-LGM deglaciation phase ANU and ICE-5G melt relatively uniformly over the entire ice sheet in contrast to UMISM, which melts preferentially from the edges, thus reflecting the fundamental difference in the reconstruction scheme. We find that all three reconstructions fit the present-day uplift rates over Fennoscandia equally well, albeit with different optimal earth model parameters. Given identical earth models, ICE-5G predicts the fastest present-day uplift rates, and ANU the slowest. Moreover, only for ANU can a unique best-fit model be determined. For UMISM and ICE-5G there is a range of earth models that can reproduce the present-day uplift rates equally well. This is understood from the higher present-day uplift rates predicted by ICE-5G and UMISM, which result in bifurcations in the best-fit upper- and lower-mantle viscosities. We study the areal distributions of present-day residual surface velocities in Fennoscandia and show that all three reconstructions generally over-predict velocities in southwestern Fennoscandia and that there are large differences in the fit to the observational data in Finland and northernmost Sweden and Norway. These difference may provide input to further enhancements of the ice sheet reconstructions.

A Fourier-based compressed sensing technique for accelerated CT image reconstruction using first-order methods.

PubMed

Choi, Kihwan; Li, Ruijiang; Nam, Haewon; Xing, Lei

2014-06-21

As a solution to iterative CT image reconstruction, first-order methods are prominent for the large-scale capability and the fast convergence rate [Formula: see text]. In practice, the CT system matrix with a large condition number may lead to slow convergence speed despite the theoretically promising upper bound. The aim of this study is to develop a Fourier-based scaling technique to enhance the convergence speed of first-order methods applied to CT image reconstruction. Instead of working in the projection domain, we transform the projection data and construct a data fidelity model in Fourier space. Inspired by the filtered backprojection formalism, the data are appropriately weighted in Fourier space. We formulate an optimization problem based on weighted least-squares in the Fourier space and total-variation (TV) regularization in image space for parallel-beam, fan-beam and cone-beam CT geometry. To achieve the maximum computational speed, the optimization problem is solved using a fast iterative shrinkage-thresholding algorithm with backtracking line search and GPU implementation of projection/backprojection. The performance of the proposed algorithm is demonstrated through a series of digital simulation and experimental phantom studies. The results are compared with the existing TV regularized techniques based on statistics-based weighted least-squares as well as basic algebraic reconstruction technique. The proposed Fourier-based compressed sensing (CS) method significantly improves both the image quality and the convergence rate compared to the existing CS techniques.

Visual attention mitigates information loss in small- and large-scale neural codes

PubMed Central

Sprague, Thomas C; Saproo, Sameer; Serences, John T

2015-01-01

Summary The visual system transforms complex inputs into robust and parsimonious neural codes that efficiently guide behavior. Because neural communication is stochastic, the amount of encoded visual information necessarily decreases with each synapse. This constraint requires processing sensory signals in a manner that protects information about relevant stimuli from degradation. Such selective processing – or selective attention – is implemented via several mechanisms, including neural gain and changes in tuning properties. However, examining each of these effects in isolation obscures their joint impact on the fidelity of stimulus feature representations by large-scale population codes. Instead, large-scale activity patterns can be used to reconstruct representations of relevant and irrelevant stimuli, providing a holistic understanding about how neuron-level modulations collectively impact stimulus encoding. PMID:25769502

Altimetric lagrangian advection to reconstruct Pacific Ocean fine scale surface tracer fields

NASA Astrophysics Data System (ADS)

Rogé, Marine; Morrow, Rosemary; Dencausse, Guillaume

2015-04-01

In past studies, lagrangian stirring of surface tracer fields by altimetric surface geostrophic currents has been performed in different mid to high-latitude regions, showing good results in reconstructing finer-scale tracer patterns. Here we apply the technique to three different regions in the eastern and western tropical Pacific, and in the subtropical southwest Pacific. Initial conditions are derived from weekly gridded temperature and salinity fields, based on hydrographic data and Argo. Validation of the improved fine-scale surface tracer fields is performed using satellite AMSRE SST data, and high-resolution ship thermosalinograph data. We test two kinds of lagrangian advection. The standard one-way advection is shown to introduce an increased tracer bias as the advection time increases. Indeed, since we only use passive stirring, a bias is introduced from the missing physics, such as air-sea fluxes or mixing. A second "backward-forward" advection technique is shown to reduce the seasonal bias, but more data is lost around coasts and islands, a strong handicap in the tropical Pacific with many small islands. In the subtropical Pacific Ocean, the mesoscale temperature and salinity fronts are well represented by the one-way advection over a 10-day advection time, including westward propagating features not apparent in the initial fields. In the tropics, the results are less clear. The validation is hampered by the complex vertical stratification, and the technique is limited by the lack of accurate surface currents for the stirring - the gridded altimetric fields poorly represent the meridional currents, and are not detecting the fast tropical instability waves, nor the wind-driven circulation. We suggest that the passive lateral stirring technique is efficient in regions with moderate the high mesoscale energy and correlated mesoscale surface temperature and surface height. In other regions, more complex dynamical processes may need to be included.

Clinical and Functional Outcomes following Primary Repair versus Reconstruction of the Medial Patellofemoral Ligament for Recurrent Patellar Instability

PubMed Central

Kuenze, Christopher M.; Diduch, David R.; Miller, Mark D.; Milewski, Matthew D.; Hart, Joseph P.

2014-01-01

Background. The purpose of this study was to compare outcomes of medial patellofemoral ligament (MPFL) repair or reconstruction. Methods. Fourteen knees that underwent MPFL repair and nine (F5, M4) knees that underwent reconstruction at our institution were evaluated for objective and subjective outcomes. The mean age at operation was 20.1 years for repair and 19.8 years for reconstruction. All patients had a minimum of 2 years of follow-up (range: 24–75 months). Patient subjective outcomes were obtained using the International Knee Documentation Committee (IKDC) and Kujala patellofemoral subjective evaluations, as well as Visual Analog (VAS) and Tegner Activity Scales. Bilateral isometric quadriceps strength and vastus medialis obliquus (VMO) and vastus lateralis (VL) surface EMG were measured during maximal isometric quadriceps contractions at 30° and 60° of flexion. Results. There were no redislocations in either group. There was no difference in IKDC (P = 0.16), Kujala (P = 0.43), Tegner (P = 0.12), or VAS (P = 0.05) scores at follow-up. There were no differences between repair and reconstruction in torque generation of the involved side at 30° (P = 0.96) and 60° (P = 0.99). In addition, there was no side to side difference in torque generation or surface EMG activation of VL or VMO. Conclusions. There were minimal differences found between patients undergoing MPFL repair and MPFL reconstruction for the objective and subjective evaluations in this study. PMID:26464893

Long-term drought sensitivity of trees in second-growth forests in a humid region

Treesearch

Neil Pederson; Kacie Tackett; Ryan W. McEwan; Stacy Clark; Adrienne Cooper; Glade Brosi; Ray Eaton; R. Drew Stockwell

2012-01-01

Classical field methods of reconstructing drought using tree rings in humid, temperate regions typically target old trees from drought-prone sites. This approach limits investigators to a handful of species and excludes large amounts of data that might be useful, especially for coverage gaps in large-scale networks. By sampling in more “typical” forests, network...

Genetic approach to reconstruct complex regional geological setting of the Baltic basin in 3D geological model

NASA Astrophysics Data System (ADS)

Popovs, K.; Saks, T.; Ukass, J.; Jatnieks, J.

2012-04-01

Interpretation of geological structures in 3D geological models is a relatively new research topic that is already standardized in many geological branches. Due to its wide practical application, these models are indispensable and become one of the dominant interpretation methods in reducing geological uncertainties in many geology fields. Traditionally, geological concepts complement quantitative as much as qualitative data to obtain a model deemed acceptable, however, available data very often is insufficient and modeling methods primarily focus on spatial data but geological history usually is mostly neglected for the modeling of large sedimentary basins. A need to better integrate the long and often complex geological history and geological knowledge into modeling procedure is very acute to gain geological insight and improve the quality of geological models. During this research, 3D geological model of the Baltic basin (BB) was created. Because of its complex regional geological setting - wide range of the data sources with multiple scales, resolution and density as well as its various source formats, the study area provides a challenge for the 3D geological modeling. In order to create 3D regional geometrical model for the study area algorithmic genetic approach for model geometry reconstruction was applied. The genetic approach is based on the assumption that post-depositional deformation produce no significant change in sedimentary strata volume, assuming that the strata thickness and its length in a cross sectional plane remains unchanged except as a result of erosion. Assuming that the tectonic deformation occurred in sequential cycles and subsequent tectonic stage strata is separated by regional unconformity as is the case of the BB, there is an opportunity for algorithmic approach in reconstructing these conditions by sequentially reconstructing the layer original thickness. Layer thicknesses were sliced along fault lines, where applicable layer thickness was adjusted by taking into account amount of erosion by the presence of the regional unconformities. Borehole data and structural maps of some surfaces were used in creating geological model of the BB. Used approach allowed creating geologically sound geometric model. At first borehole logs were used to reconstruct initial thicknesses of different strata in every tectonic stage, where topography of each strata was obtained sequentially summing thickness to the initial reference surface from structural maps. Thereby each layer reflects the topography and amount of slip along the fault of the overlying layer. Overlying tectonic cycle sequence is implemented into the model structure by using unconformity surface as an initial reference surface. Applied techniques made possible reliably reconstructing and predicting in areas of sparse data layer surface geometry, its thickness distribution and evaluating displacements along the fault planes. Overall results indicate that the used approach has a good potential in development of regional geological models for the sedimentary basins and is valid for spatial interpretation of geological structures, subordinating this process to geological evolution prerequisites. This study is supported by the European Social Fund project No. 2009/0212/1DP/1.1.1.2.0/09/APIA/VIAA/060.

Coupled sea surface temperature-seawater δ18O reconstructions in the Arabian Sea at the millennial scale for the last 35 ka

NASA Astrophysics Data System (ADS)

Anand, Pallavi; Kroon, Dick; Singh, Arun Deo; Ganeshram, Raja S.; Ganssen, Gerald; Elderfield, Henry

2008-12-01

Two sediment cores from the western (905; 10.46°9'N, 51.56°4'E, water depth 1586 m) and eastern (SK17; 15°15'N, 72°58'E, water depth 840 m) Arabian Sea were used to study past sea surface temperatures (SST) and seawater δ18O (δ18Ow) variations for the past 35 ka. We used coupled Mg/Ca-δ18O calcite variability in two planktonic foraminiferal species: Globigerinoides ruber, which thrives throughout the year, and Globigerina bulloides, which occurs mainly when surface waters contain high nutrients during upwelling or convective mixing. SSTs in both areas based on Mg/Ca in G. ruber were ˜3 to 4°C lower during the Last Glacial Maximum (LGM; ˜21 ka) than today and the Holocene period. The SST records based on G. bulloides also indicate general cooling, down to 18°C in both areas. SSTs in the western Arabian Sea based on G. bulloides were always lower than those based on G. ruber, indicating the presence of strong seasonal temperature contrast during the Holocene and LGM. We interpret the consistent presence of this seasonal temperature contrast to reflect a combination of seasonal summer upwelling (SW monsoon) and winter convective mixing (NE monsoon) in the western Arabian Sea. In the eastern Arabian Sea, G. bulloides-based SSTs were slightly lower (about 1°C) than G. ruber-based SSTs during the Holocene, indicating the almost absence of a seasonal temperature gradient, similar to today. However, a large seasonal temperature contrast occurred during the LGM which favors the assumption that strong NE monsoon winds forced winter upwelling or convective mixing offshore Goa. SST and δ18Ow reconstructions reveal evidence of millennial-scale cycles, particularly in the eastern Arabian Sea. Here, the stadial periods (Northern Hemisphere cold periods such as Younger Dryas and Heinrich events) are marked by increasing SSTs and salty sea surface conditions relative to those during the interstadial periods. Indeed, the δ18Ow record shows evidence of low-saline surface waters during interstadial periods, indicating increased freshwater runoff from the Western Ghats as a consequence of enhanced SW monsoon intensity.

3D reconstruction software comparison for short sequences

NASA Astrophysics Data System (ADS)

Strupczewski, Adam; Czupryński, BłaŻej

2014-11-01

Large scale multiview reconstruction is recently a very popular area of research. There are many open source tools that can be downloaded and run on a personal computer. However, there are few, if any, comparisons between all the available software in terms of accuracy on small datasets that a single user can create. The typical datasets for testing of the software are archeological sites or cities, comprising thousands of images. This paper presents a comparison of currently available open source multiview reconstruction software for small datasets. It also compares the open source solutions with a simple structure from motion pipeline developed by the authors from scratch with the use of OpenCV and Eigen libraries.

[Research advances in dendrochronology].

PubMed

Fang, Ke-Yan; Chen, Qiu-Yan; Liu, Chang-Zhi; Cao, Chun-Fu; Chen, Ya-Jun; Zhou, Fei-Fei

2014-07-01

Tree-ring studies in China have achieved great advances since the 1990s, particularly for the dendroclimatological studies which have made some influence around the world. However, because of the uneven development, limited attention has been currently paid on the other branches of dendrochronology. We herein briefly compared the advances of dendrochronology in China and of the world and presented suggestions on future dendrochronological studies. Large-scale tree-ring based climate reconstructions in China are highly needed by employing mathematical methods and a high quality tree-ring network of the ring-width, density, stable isotope and wood anatomy. Tree-ring based field climate reconstructions provide potentials on explorations of climate forcings during the reconstructed periods via climate diagnosis and process simulation.

Studies of the oxidized Cu(100) surface using positron annihilation induced Auger electron spectroscopy

NASA Astrophysics Data System (ADS)

Maddox, W.; Fazleev, N. G.; Nadesalingam, M. P.; Weiss, A. H.

2008-03-01

We discuss recent progress in studies of an oxidized Cu(100) single crystal subjected to vacuum annealing over a temperature range from 293K to 1073K using positron annihilation induced Auger electron spectroscopy (PAES). The PAES measurements show a large monotonic increase in the intensity of the positron annihilation induced Cu M2,3 VV Auger peak as the sample is subjected to a series of isochronal anneals in vacuum up to annealing temperature 573 K. The intensity then decreases monotonically as the annealing temperature is increased to 873 K. Experimental PAES results are analyzed by performing calculations of positron surface states and annihilation probabilities of surface-trapped positrons with relevant core electrons taking into account the charge redistribution at the surface, surface reconstructions, and electron-positron correlations effects. The effects of oxygen adsorption and surface reconstruction on localization of positron surface state wave functions and annihilation characteristics are analyzed. Possible explanations are provided for the observed behavior of the intensity of positron annihilation induced Cu M2,3VV Auger peak with changes of the annealing temperature.

Model-data comparisons of crevasses in accelerating glaciers exemplified for the 2011-2013 surge of Bering Glacier, Alaska

NASA Astrophysics Data System (ADS)

Trantow, T.; Herzfeld, U. C.

2017-12-01

Glacier acceleration, ubiquitous along the periphery of the major icesheets, presents one of the main uncertainties in modeling future global sea-level rise according to the IPCC 5th Assessment Report (2013). The surge phenomenon is one type of glacial acceleration and is the least understood. During a surge, large-scale elevation change and significant crevassing occurs throughout the entire ice system. Crevasses are the most obvious manifestations of the surge dynamics and provide a source of geophysical information that allows reconstruction of deformation processes. The recent surge of the Bering-Bagley Glacier System (BBGS), Alaska, in 2011-2013 provides an excellent test case to study surging through airborne and satellite observations together with numerical modeling. A 3D full-Stokes finite element model of the BBGS has been created using the Elmer/Ice software for structural and dynamical investigations of the surge. A von Mises condition is applied to modeled surface stresses to predict where crevassing would occur during the surge. The model uses CryoSat-2 derived surface topography (Baseline-C), bedrock topography, Glen's flow law with an isothermal assumption and a uniform linear friction law at the ice/bedrock boundary to represent the surge state in early 2011 when peak velocities were observed. Additionally, geostatistical characterization applied to optical satellite imagery provides an observational data set for model-data comparisons. Observed and modeled crevasse characteristics are compared with respect to their location, magnitude and orientation. Similarity mapping applied to the modeled von Mises stress and observed surface roughness values indicates that the two quantities are correlated. Results indicate that large-scale surface crevasses resulting from a surge are connected to the bedrock topography of the glacier system. The model-data comparisons used in this analysis serve to validate the numerical model and provide insight into the quality of our model input.

Novel method to construct large-scale design space in lubrication process utilizing Bayesian estimation based on a small-scale design-of-experiment and small sets of large-scale manufacturing data.

PubMed

Maeda, Jin; Suzuki, Tatsuya; Takayama, Kozo

2012-12-01

A large-scale design space was constructed using a Bayesian estimation method with a small-scale design of experiments (DoE) and small sets of large-scale manufacturing data without enforcing a large-scale DoE. The small-scale DoE was conducted using various Froude numbers (X(1)) and blending times (X(2)) in the lubricant blending process for theophylline tablets. The response surfaces, design space, and their reliability of the compression rate of the powder mixture (Y(1)), tablet hardness (Y(2)), and dissolution rate (Y(3)) on a small scale were calculated using multivariate spline interpolation, a bootstrap resampling technique, and self-organizing map clustering. The constant Froude number was applied as a scale-up rule. Three experiments under an optimal condition and two experiments under other conditions were performed on a large scale. The response surfaces on the small scale were corrected to those on a large scale by Bayesian estimation using the large-scale results. Large-scale experiments under three additional sets of conditions showed that the corrected design space was more reliable than that on the small scale, even if there was some discrepancy in the pharmaceutical quality between the manufacturing scales. This approach is useful for setting up a design space in pharmaceutical development when a DoE cannot be performed at a commercial large manufacturing scale.

Reconstructing matter profiles of spherically compensated cosmic regions in ΛCDM cosmology

NASA Astrophysics Data System (ADS)

de Fromont, Paul; Alimi, Jean-Michel

2018-02-01

The absence of a physically motivated model for large-scale profiles of cosmic voids limits our ability to extract valuable cosmological information from their study. In this paper, we address this problem by introducing the spherically compensated cosmic regions, named CoSpheres. Such cosmic regions are identified around local extrema in the density field and admit a unique compensation radius R1 where the internal spherical mass is exactly compensated. Their origin is studied by extending the standard peak model and implementing the compensation condition. Since the compensation radius evolves as the Universe itself, R1(t) ∝ a(t), CoSpheres behave as bubble Universes with fixed comoving volume. Using the spherical collapse model, we reconstruct their profiles with a very high accuracy until z = 0 in N-body simulations. CoSpheres are symmetrically defined and reconstructed for both central maximum (seeding haloes and galaxies) and minimum (identified with cosmic voids). We show that the full non-linear dynamics can be solved analytically around this particular compensation radius, providing useful predictions for cosmology. This formalism highlights original correlations between local extremum and their large-scale cosmic environment. The statistical properties of these spherically compensated cosmic regions and the possibilities to constrain efficiently both cosmology and gravity will be investigated in companion papers.

Detection of Baryon Acoustic Oscillation features in the large-scale 3-point correlation function of SDSS BOSS DR12 CMASS galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slepian, Zachary; Slosar, Anze; Eisenstein, Daniel J.

We present the large-scale 3-point correlation function (3PCF) of the SDSS DR12 CMASS sample of 777,202 Luminous Red Galaxies, the largest-ever sample used for a 3PCF or bispectrum measurement. We make the first high-significance (4.5σ) detection of Baryon Acoustic Oscillations (BAO) in the 3PCF. Using these acoustic features in the 3PCF as a standard ruler, we measure the distance to z=0.57 to 1.7% precision (statistical plus systematic). We find D V = 2024 ± 29Mpc (stat) ± 20Mpc(sys) for our fiducial cosmology (consistent with Planck 2015) and bias model. This measurement extends the use of the BAO technique from themore » 2-point correlation function (2PCF) and power spectrum to the 3PCF and opens an avenue for deriving additional cosmological distance information from future large-scale structure redshift surveys such as DESI. Our measured distance scale from the 3PCF is fairly independent from that derived from the pre-reconstruction 2PCF and is equivalent to increasing the length of BOSS by roughly 10%; reconstruction appears to lower the independence of the distance measurements. In conclusion, fitting a model including tidal tensor bias yields a moderate significance (2.6σ) detection of this bias with a value in agreement with the prediction from local Lagrangian biasing.« less

Detection of baryon acoustic oscillation features in the large-scale three-point correlation function of SDSS BOSS DR12 CMASS galaxies

NASA Astrophysics Data System (ADS)

Slepian, Zachary; Eisenstein, Daniel J.; Brownstein, Joel R.; Chuang, Chia-Hsun; Gil-Marín, Héctor; Ho, Shirley; Kitaura, Francisco-Shu; Percival, Will J.; Ross, Ashley J.; Rossi, Graziano; Seo, Hee-Jong; Slosar, Anže; Vargas-Magaña, Mariana

2017-08-01

We present the large-scale three-point correlation function (3PCF) of the Sloan Digital Sky Survey DR12 Constant stellar Mass (CMASS) sample of 777 202 Luminous Red Galaxies, the largest-ever sample used for a 3PCF or bispectrum measurement. We make the first high-significance (4.5σ) detection of baryon acoustic oscillations (BAO) in the 3PCF. Using these acoustic features in the 3PCF as a standard ruler, we measure the distance to z = 0.57 to 1.7 per cent precision (statistical plus systematic). We find DV = 2024 ± 29 Mpc (stat) ± 20 Mpc (sys) for our fiducial cosmology (consistent with Planck 2015) and bias model. This measurement extends the use of the BAO technique from the two-point correlation function (2PCF) and power spectrum to the 3PCF and opens an avenue for deriving additional cosmological distance information from future large-scale structure redshift surveys such as DESI. Our measured distance scale from the 3PCF is fairly independent from that derived from the pre-reconstruction 2PCF and is equivalent to increasing the length of BOSS by roughly 10 per cent; reconstruction appears to lower the independence of the distance measurements. Fitting a model including tidal tensor bias yields a moderate-significance (2.6σ) detection of this bias with a value in agreement with the prediction from local Lagrangian biasing.

Detection of Baryon Acoustic Oscillation features in the large-scale 3-point correlation function of SDSS BOSS DR12 CMASS galaxies

DOE PAGES

Slepian, Zachary; Slosar, Anze; Eisenstein, Daniel J.; ...

2017-03-01

We present the large-scale 3-point correlation function (3PCF) of the SDSS DR12 CMASS sample of 777,202 Luminous Red Galaxies, the largest-ever sample used for a 3PCF or bispectrum measurement. We make the first high-significance (4.5σ) detection of Baryon Acoustic Oscillations (BAO) in the 3PCF. Using these acoustic features in the 3PCF as a standard ruler, we measure the distance to z=0.57 to 1.7% precision (statistical plus systematic). We find D V = 2024 ± 29Mpc (stat) ± 20Mpc(sys) for our fiducial cosmology (consistent with Planck 2015) and bias model. This measurement extends the use of the BAO technique from themore » 2-point correlation function (2PCF) and power spectrum to the 3PCF and opens an avenue for deriving additional cosmological distance information from future large-scale structure redshift surveys such as DESI. Our measured distance scale from the 3PCF is fairly independent from that derived from the pre-reconstruction 2PCF and is equivalent to increasing the length of BOSS by roughly 10%; reconstruction appears to lower the independence of the distance measurements. In conclusion, fitting a model including tidal tensor bias yields a moderate significance (2.6σ) detection of this bias with a value in agreement with the prediction from local Lagrangian biasing.« less

The Stratigraphy and Evolution of the Lunar Crust

NASA Technical Reports Server (NTRS)

McCallum, I. Stewart

1998-01-01

Reconstruction of stratigraphic relationships in the ancient lunar crust has proved to be a formidable task. The intense bombardment during the first 700 m.y. of lunar history has severely perturbed the original stratigraphy and destroyed the primary textures of all but a few nonmare rocks. However, a knowledge of the crustal stratigraphy as it existed prior to the cataclysmic bombardment about 3.9 Ga is essential to test the major models proposed for crustal origin, i.e., crystal fractionation in a global magmasphere or serial magmatism in a large number of smaller bodies. Despite the large difference in scale implicit in these two models, both require an efficient separation of plagioclase and mafic minerals to form the anorthositic crust and the mafic mantle. Despite the havoc wreaked by the large body impactors, these same impact processes have brought to the lunar surface crystalline samples derived from at least the upper half of the lunar crust, thereby providing an opportunity to reconstruct the stratigraphy in areas sampled by the Apollo missions. As noted, ejecta from the large multiring basins are dominantly, or even exclusively, of crustal origin. Given the most recent determinations of crustal thicknesses, this implies an upper limit to the depth of excavation of about 60 km. Of all the lunar samples studied, a small set has been recognized as "pristine", and within this pristine group, a small fraction have retained some vestiges of primary features formed during the earliest stages of crystallization or recrystallization prior to 4.0 Ga. We have examined a number of these samples that have retained some record of primary crystallization to deduce thermal histories from an analysis of structural, textural, and compositional features in minerals from these samples. Specifically, by quantitative modeling of (1) the growth rate and development of compositional profiles of exsolution lamellae in pyroxenes and (2) the rate of Fe-Mg ordering in orthopyroxenes, we can constrain the cooling rates of appropriate lunar samples. These cooling rates are used to compute depths of burial at the time of crystallization, which enable us to reconstruct parts of the crustal stratigraphy as it existed during the earliest stages of lunar history.

Volcanic influence on centennial to millennial Holocene Greenland temperature change.

PubMed

Kobashi, Takuro; Menviel, Laurie; Jeltsch-Thömmes, Aurich; Vinther, Bo M; Box, Jason E; Muscheler, Raimund; Nakaegawa, Toshiyuki; Pfister, Patrik L; Döring, Michael; Leuenberger, Markus; Wanner, Heinz; Ohmura, Atsumu

2017-05-03

Solar variability has been hypothesized to be a major driver of North Atlantic millennial-scale climate variations through the Holocene along with orbitally induced insolation change. However, another important climate driver, volcanic forcing has generally been underestimated prior to the past 2,500 years partly owing to the lack of proper proxy temperature records. Here, we reconstruct seasonally unbiased and physically constrained Greenland Summit temperatures over the Holocene using argon and nitrogen isotopes within trapped air in a Greenland ice core (GISP2). We show that a series of volcanic eruptions through the Holocene played an important role in driving centennial to millennial-scale temperature changes in Greenland. The reconstructed Greenland temperature exhibits significant millennial correlations with K + and Na + ions in the GISP2 ice core (proxies for atmospheric circulation patterns), and δ 18 O of Oman and Chinese Dongge cave stalagmites (proxies for monsoon activity), indicating that the reconstructed temperature contains hemispheric signals. Climate model simulations forced with the volcanic forcing further suggest that a series of large volcanic eruptions induced hemispheric-wide centennial to millennial-scale variability through ocean/sea-ice feedbacks. Therefore, we conclude that volcanic activity played a critical role in driving centennial to millennial-scale Holocene temperature variability in Greenland and likely beyond.

A Coral-based Reconstruction of Sea Surface Salinity at Sabine Bank, Vanuatu from 2007 to 1843 CE

NASA Astrophysics Data System (ADS)

Gorman, M. K.; Quinn, T. M.; Taylor, F. W.; Dunn, E. M.; Cabioch, G.; Ballu, V.; Maes, C.; Austin, J. A.; Saustrup, S.; Pelletier, B.

2011-12-01

We present a reconstruction of sea surface salinity (SSS) derived from a coral δ18O time series extending from 2007-1843 CE at Sabine Bank, Vanuatu (SBV, 166.04° E, 15.94°S). This reconstruction is significant because instrumental records of SSS are rare in time and space, yet the SSS response to the El Niño Southern Oscillation (ENSO) forcing is large in many regions of the tropical oceans. There is a strong positive relationship between sea surface temperature anomalies (SSTA) in the central Pacific (Niño 3.4 region; canonical ENSO signal) and six month lagged sea surface salinity anomalies (SSSA, data from Delcroix et al., 2011) at SBV, which establishes a dynamical link between surface ocean variability at SBV and ENSO variability. We calculate a coral δ18O anomaly time series and note that there is a strong correlation between it and instrumental SSS variations over the period 1970-2007 (r = 0.70, p < 0.01). We compute a linear transfer function that we use to predict SSS variations given observed coral δ18O variations. A calibration-verification exercise conducted over two intervals (1970-1987, 1988-2007) resulted in similar correlations between instrumental and reconstructed SSS for both time periods, which provides confidence in our SSS reconstructions in the pre-1970 interval. We further test our SBV transfer function by applying it to a previously published coral δ18O record from Malo Channel, Vanuatu (Kilbourne et al., 2004b), located 130 km to the east of Sabine Bank. The reconstructed SSS time series from the two locations over their common time interval (1991-1939 CE) are nearly always the same within error, indicating that the ENSO-influenced salinity signal is regional in extent, and can be reconstructed using coral δ18O records from Vanuatu. We observe high salinity excursions (>0.5 psu) pre-1970 corresponding to strong ENSO warm phase events recorded in the SST instrumental record and historical ENSO record (i.e. 1941-42, 1918-19, 1877-78), and an overall freshening trend, demonstrating the ability of our reconstructed dataset to capture interannual variability as well as long-term trends in SSS at Vanuatu.

A novel representation of groundwater dynamics in large-scale land surface modelling

NASA Astrophysics Data System (ADS)

Rahman, Mostaquimur; Rosolem, Rafael; Kollet, Stefan

2017-04-01

Land surface processes are connected to groundwater dynamics via shallow soil moisture. For example, groundwater affects evapotranspiration (by influencing the variability of soil moisture) and runoff generation mechanisms. However, contemporary Land Surface Models (LSM) generally consider isolated soil columns and free drainage lower boundary condition for simulating hydrology. This is mainly due to the fact that incorporating detailed groundwater dynamics in LSMs usually requires considerable computing resources, especially for large-scale applications (e.g., continental to global). Yet, these simplifications undermine the potential effect of groundwater dynamics on land surface mass and energy fluxes. In this study, we present a novel approach of representing high-resolution groundwater dynamics in LSMs that is computationally efficient for large-scale applications. This new parameterization is incorporated in the Joint UK Land Environment Simulator (JULES) and tested at the continental-scale.

Hydrodynamic Simulations and Tomographic Reconstructions of the Intergalactic Medium

NASA Astrophysics Data System (ADS)

Stark, Casey William

The Intergalactic Medium (IGM) is the dominant reservoir of matter in the Universe from which the cosmic web and galaxies form. The structure and physical state of the IGM provides insight into the cosmological model of the Universe, the origin and timeline of the reionization of the Universe, as well as being an essential ingredient in our understanding of galaxy formation and evolution. Our primary handle on this information is a signal known as the Lyman-alpha forest (or Ly-alpha forest) -- the collection of absorption features in high-redshift sources due to intervening neutral hydrogen, which scatters HI Ly-alpha photons out of the line of sight. The Ly-alpha forest flux traces density fluctuations at high redshift and at moderate overdensities, making it an excellent tool for mapping large-scale structure and constraining cosmological parameters. Although the computational methodology for simulating the Ly-alpha forest has existed for over a decade, we are just now approaching the scale of computing power required to simultaneously capture large cosmological scales and the scales of the smallest absorption systems. My thesis focuses on using simulations at the edge of modern computing to produce precise predictions of the statistics of the Ly-alpha forest and to better understand the structure of the IGM. In the first part of my thesis, I review the state of hydrodynamic simulations of the IGM, including pitfalls of the existing under-resolved simulations. Our group developed a new cosmological hydrodynamics code to tackle the computational challenge, and I developed a distributed analysis framework to compute flux statistics from our simulations. I present flux statistics derived from a suite of our large hydrodynamic simulations and demonstrate convergence to the per cent level. I also compare flux statistics derived from simulations using different discretizations and hydrodynamic schemes (Eulerian finite volume vs. smoothed particle hydrodynamics) and discuss differences in their convergence behavior, their overall agreement, and the implications for cosmological constraints. In the second part of my thesis, I present a tomographic reconstruction method that allows us to make 3D maps of the IGM with Mpc resolution. In order to make reconstructions of large surveys computationally feasible, I developed a new Wiener Filter application with an algorithm specialized to our problem, which significantly reduces the space and time complexity compared to previous implementations. I explore two scientific applications of the maps: finding protoclusters by searching the maps for large, contiguous regions of low flux and finding cosmic voids by searching the maps for regions of high flux. Using a large N-body simulation, I identify and characterize both protoclusters and voids at z = 2.5, in the middle of the redshift range being mapped by ongoing surveys. I provide simple methods for identifying protocluster and void candidates in the tomographic flux maps, and then test them on mock surveys and reconstructions. I present forecasts for sample purity and completeness and other scientific applications of these large, high-redshift objects.

Multigrid preconditioned conjugate-gradient method for large-scale wave-front reconstruction.

PubMed

Gilles, Luc; Vogel, Curtis R; Ellerbroek, Brent L

2002-09-01

We introduce a multigrid preconditioned conjugate-gradient (MGCG) iterative scheme for computing open-loop wave-front reconstructors for extreme adaptive optics systems. We present numerical simulations for a 17-m class telescope with n = 48756 sensor measurement grid points within the aperture, which indicate that our MGCG method has a rapid convergence rate for a wide range of subaperture average slope measurement signal-to-noise ratios. The total computational cost is of order n log n. Hence our scheme provides for fast wave-front simulation and control in large-scale adaptive optics systems.

Utilization of Large Scale Surface Models for Detailed Visibility Analyses

NASA Astrophysics Data System (ADS)

Caha, J.; Kačmařík, M.

2017-11-01

This article demonstrates utilization of large scale surface models with small spatial resolution and high accuracy, acquired from Unmanned Aerial Vehicle scanning, for visibility analyses. The importance of large scale data for visibility analyses on the local scale, where the detail of the surface model is the most defining factor, is described. The focus is not only the classic Boolean visibility, that is usually determined within GIS, but also on so called extended viewsheds that aims to provide more information about visibility. The case study with examples of visibility analyses was performed on river Opava, near the Ostrava city (Czech Republic). The multiple Boolean viewshed analysis and global horizon viewshed were calculated to determine most prominent features and visibility barriers of the surface. Besides that, the extended viewshed showing angle difference above the local horizon, which describes angular height of the target area above the barrier, is shown. The case study proved that large scale models are appropriate data source for visibility analyses on local level. The discussion summarizes possible future applications and further development directions of visibility analyses.

Muon reconstruction performance of the ATLAS detector in proton-proton collision data at [Formula: see text]=13 TeV.

PubMed

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Tovey, D R; Trefzger, T; Tricoli, A; Trigger, I M; Trincaz-Duvoid, S; Tripiana, M F; Trischuk, W; Trocmé, B; Trofymov, A; Troncon, C; Trottier-McDonald, M; Trovatelli, M; Truong, L; Trzebinski, M; Trzupek, A; Tseng, J C-L; Tsiareshka, P V; Tsipolitis, G; Tsirintanis, N; Tsiskaridze, S; Tsiskaridze, V; Tskhadadze, E G; Tsui, K M; Tsukerman, I I; Tsulaia, V; Tsuno, S; Tsybychev, D; Tudorache, A; Tudorache, V; Tuna, A N; Tupputi, S A; Turchikhin, S; Turecek, D; Turgeman, D; Turra, R; Turvey, A J; Tuts, P M; Tyndel, M; Ucchielli, G; Ueda, I; Ueno, R; Ughetto, M; Ukegawa, F; Unal, G; Undrus, A; Unel, G; Ungaro, F C; Unno, Y; Unverdorben, C; Urban, J; Urquijo, P; Urrejola, P; Usai, G; Usanova, A; Vacavant, L; Vacek, V; Vachon, B; Valderanis, C; Valdes Santurio, E; Valencic, N; Valentinetti, S; Valero, A; Valery, L; Valkar, S; Vallecorsa, S; Valls Ferrer, J A; Van Den Wollenberg, W; Van Der Deijl, P C; van der Geer, R; van der Graaf, H; van Eldik, N; van Gemmeren, P; Van Nieuwkoop, J; van Vulpen, I; van Woerden, M C; Vanadia, M; Vandelli, W; Vanguri, R; Vaniachine, A; Vankov, P; Vardanyan, G; Vari, R; Varnes, E W; Varol, T; Varouchas, D; Vartapetian, A; Varvell, K E; Vasquez, J G; Vazeille, F; Vazquez Schroeder, T; Veatch, J; Veloce, L M; Veloso, F; Veneziano, S; Ventura, A; Venturi, M; Venturi, N; Venturini, A; Vercesi, V; Verducci, M; Verkerke, W; Vermeulen, J C; Vest, A; Vetterli, M C; Viazlo, O; Vichou, I; Vickey, T; Vickey Boeriu, O E; Viehhauser, G H A; Viel, S; Vigani, L; Vigne, R; Villa, M; Villaplana Perez, M; Vilucchi, E; Vincter, M G; Vinogradov, V B; Vittori, C; Vivarelli, I; Vlachos, S; Vlasak, M; Vogel, M; Vokac, P; Volpi, G; Volpi, M; von der Schmitt, H; von Toerne, E; Vorobel, V; Vorobev, K; Vos, M; Voss, R; Vossebeld, J H; Vranjes, N; Vranjes Milosavljevic, M; Vrba, V; Vreeswijk, M; Vuillermet, R; Vukotic, I; Vykydal, Z; Wagner, P; Wagner, W; Wahlberg, H; Wahrmund, S; Wakabayashi, J; Walder, J; Walker, R; Walkowiak, W; Wallangen, V; Wang, C; Wang, C; Wang, F; Wang, H; 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Zoccoli, A; Zur Nedden, M; Zurzolo, G; Zwalinski, L

2016-01-01

This article documents the performance of the ATLAS muon identification and reconstruction using the LHC dataset recorded at [Formula: see text] TeV in 2015. Using a large sample of [Formula: see text] and [Formula: see text] decays from 3.2 fb[Formula: see text] of pp collision data, measurements of the reconstruction efficiency, as well as of the momentum scale and resolution, are presented and compared to Monte Carlo simulations. The reconstruction efficiency is measured to be close to [Formula: see text] over most of the covered phase space ([Formula: see text] and [Formula: see text] GeV). The isolation efficiency varies between 93 and [Formula: see text] depending on the selection applied and on the momentum of the muon. Both efficiencies are well reproduced in simulation. In the central region of the detector, the momentum resolution is measured to be [Formula: see text] ([Formula: see text]) for muons from [Formula: see text] ([Formula: see text]) decays, and the momentum scale is known with an uncertainty of [Formula: see text]. In the region [Formula: see text], the [Formula: see text] resolution for muons from [Formula: see text] decays is [Formula: see text] while the precision of the momentum scale for low-[Formula: see text] muons from [Formula: see text] decays is about [Formula: see text].

Cryopreserved Ultra-Thick Human Amniotic Membrane for Conjunctival Surface Reconstruction After Excision of Conjunctival Tumors.

PubMed

Tanaka, Thais S; Demirci, Hakan

2016-04-01

Cryopreserved ultra-thick human amniotic membrane (AM) is used for glaucoma surgery. We evaluated the use of cryopreserved ultra-thick human AM for conjunctival surface reconstruction after excision of a conjunctival tumor. We retrospectively reviewed the medical records of 28 patients who underwent conjunctival surface reconstruction with cryopreserved ultra-thick human AM after excision of the tumor. The AM was secured to the surrounding conjunctiva and underlying sclera with interrupted 8-0 Vicryl sutures. Clinical data regarding demographics, diagnosis, size and location of conjunctival tumors, patient outcome, and complications were gathered. Of 28 patients, 6 (21.4%) had malignant melanoma, 4 (14.3%) had squamous cell carcinoma, 6 (21.4%) had conjunctival intraepithelial neoplasia, 1 (3.6%) had sebaceous carcinoma, 1 (3.6%) had mucoepidermoid carcinoma, 1 (3.6%) had conjunctival intraepithelial dysplasia, 5 (17.9%) had pterygium, 2 (7.1%) had compound nevus, 1 (3.6%) had a large epithelial inclusion cyst, and 1 (3.6%) patient had a granuloma. The mean area of graft size was 156 ± 120 mm2. Postoperatively, the graft was well tolerated with no failure, discomfort, or dehiscence. During the 17-month mean follow-up, symblepharon, which was clinically nonsignificant, developed in 3 (11%) patients and partial stem cell deficiency was noted in 5 (18%) patients. Cryopreserved ultra-thick human AM is a well-tolerated, effective graft material that is easy to handle. It is a viable alternative for conjunctival surface reconstruction after excision of a conjunctival tumor.

Quasi-linear regime of gravitational instability: Implication to density-velocity relation

NASA Technical Reports Server (NTRS)

Shandarin, Sergei F.

1993-01-01

The well known linear relation between density and peculiar velocity distributions is a powerful tool for studying the large-scale structure in the Universe. Potentially it can test the gravitational instability theory and measure Omega. At present it is used in both ways: the velocity is reconstructed, provided the density is given, and vice versa. Reconstructing the density from the velocity field usually makes use of the Zel'dovich approximation. However, the standard linear approximation in Eulerian space is used when the velocity is reconstructed from the density distribution. I show that the linearized Zel'dovich approximation, in other words the linear approximation in the Lagrangian space, is more accurate for reconstructing velocity. In principle, a simple iteration technique can recover both the density and velocity distributions in Lagrangian space, but its practical application may need an additional study.

3D Surface Reconstruction and Automatic Camera Calibration

NASA Technical Reports Server (NTRS)

Jalobeanu, Andre

2004-01-01

Illustrations in this view-graph presentation are presented on a Bayesian approach to 3D surface reconstruction and camera calibration.Existing methods, surface analysis and modeling,preliminary surface reconstruction results, and potential applications are addressed.

Impact of volcanic eruptions on the climate of the 1st millennium AD in a comprehensive climate simulation

NASA Astrophysics Data System (ADS)

Wagner, Sebastian; Zorita, Eduardo

2015-04-01

The climate of the 1st millennium AD shows some remarkable differences compared to the last millennium concerning variation in external forcings. Together with an orbitally induced increased solar insolation during the northern hemisphere summer season and a general lack of strong solar minima, the frequency and intensity of large tropical and extratropical eruptions is decreased. Here we present results of a new climate simulation carried out with the comprehensive Earth System Model MPI-ESM-P forced with variations in orbital, solar, volcanic and greenhouse gas variations and land use changes for the last 2,100 years. The atmospheric model has a horizontal resolution of T63 (approx. 125x125 km) and therefore also allows investigations of regional-to-continental scale climatic phenomena. The volcanic forcing was reconstructed based on a publication by Sigl et al. (2013) using the sulfate records of the NEEM and WAIS ice cores. To obtain information on the aerosol optical depth (AOD) these sulfate records were scaled to an established reconstruction from Crowley and Unterman (2010), which is also a standard forcing in the framework of CMIP5/PMIP3. A comparison between the newly created data set with the Crowley and Unterman dataset reveals that the new reconstruction shows in general weaker intensities, especially of the large tropical outbreaks and fewer northern hemispheric small-to-medium scale eruptions. However, the general pattern in the overlapping period is similar. A hypothesis that can be tested with the simulation is whether the reduced volcanic intensity of the 1st millennium AD contributed to the elevated temperature levels over Europe, evident within a new proxy-based reconstruction. On the other hand, the few but large volcanic eruptions, e.g. the 528 AD event, also induced negative decadal-scale temperature anomalies. Another interesting result of the simulation relates to the 79 AD eruption of the Vesuvius, which caused the collapse of the city of Pompeii and its surroundings. Despite its severe local effects the eruption does not show a clear-cut hemispheric or global cooling. Therefore the simulation allows investigations on the effect of individual and clustered eruptions on the climate in the 1st millennium AD and its potential influence to human induced migration periods and decay of cultures in different regions.

SEM-microphotogrammetry, a new take on an old method for generating high-resolution 3D models from SEM images.

PubMed

Ball, A D; Job, P A; Walker, A E L

2017-08-01

The method we present here uses a scanning electron microscope programmed via macros to automatically capture dozens of images at suitable angles to generate accurate, detailed three-dimensional (3D) surface models with micron-scale resolution. We demonstrate that it is possible to use these Scanning Electron Microscope (SEM) images in conjunction with commercially available software originally developed for photogrammetry reconstructions from Digital Single Lens Reflex (DSLR) cameras and to reconstruct 3D models of the specimen. These 3D models can then be exported as polygon meshes and eventually 3D printed. This technique offers the potential to obtain data suitable to reconstruct very tiny features (e.g. diatoms, butterfly scales and mineral fabrics) at nanometre resolution. Ultimately, we foresee this as being a useful tool for better understanding spatial relationships at very high resolution. However, our motivation is also to use it to produce 3D models to be used in public outreach events and exhibitions, especially for the blind or partially sighted. © 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society.

Reconstruction of a Three Hourly 1-km Land Surface Air Temperature Dataset in the Qinghai-Tibet Plateau

NASA Astrophysics Data System (ADS)

Zhou, J.; Ding, L.

2017-12-01

Land surface air temperature (SAT) is an important parameter in the modeling of radiation balance and energy budget of the earth surface. Generally, SAT is measured at ground meteorological stations; then SAT mapping is possible though a spatial interpolation process. The interpolated SAT map relies on the spatial distribution of ground stations, the terrain, and many other factors; thus, it has great uncertainties in regions with complicated terrain. Instead, SAT map can also be obtained through physical modeling of interactions between the land surface and the atmosphere. Such dataset generally has coarse spatial resolution (e.g. coarser than 0.1°) and cannot satisfy the applications at fine scales, e.g. 1 km. This presentation reports the reconstruction of a three hourly 1-km SAT dataset from 2001 to 2015 over the Qinghai-Tibet Plateau. The terrain in the Qinghai-Tibet Plateau, especially in the eastern part, is extremely complicated. Two SAT datasets with good qualities are used in this study. The first one is from the 3h China Meteorological Forcing Dataset with a 0.1° resolution released by the Institute of Tibetan Plateau Research, Chinese Academy of Sciences (Yang et al., 2010); the second one is from the ERA-Interim product with the same temporal resolution and a 0.125° resolution. A statistical approach is developed to downscale the spatial resolution of the derived SAT to 1-km. The elevation and the normalized difference vegetation index (NDVI) are selected as two scaling factors in the downscaling approach. Results demonstrate there is significantly negative correlation between the SAT and elevation in all seasons; there is also significantly negative correlation between the SAT and NDVI in the vegetation growth seasons, while the correlation decreases in the other seasons. Therefore, a temporally dynamic downscaling approach is feasible to enhance the spatial resolution of the SAT. Compared with the SAT at the 0.1° or 0.125°, the reconstructed 1-km SAT can provide much more spatial details in areas with complicated terrain. Additionally, the 1-km SAT agrees well with the ground measured air temperatures as well as the SAT before downscaling. The reconstructed SAT will be beneficial for the modeling of surface radiation balance and energy budget over the Qinghai-Tibet Plateau.

Abrupt Greenland Ice Sheet runoff and sea water temperature changes since 1821, recorded by coralline algae

NASA Astrophysics Data System (ADS)

Kamenos, N.; Hoey, T.; Bedford, J.; Claverie, T.; Fallick, A. E.; Lamb, C. M.; Nienow, P. W.; O'Neill, S.; Shepherd, I.; Thormar, J.

2012-12-01

The Greenland Ice Sheet (GrIS) contains the largest store of fresh water in the northern hemisphere, equivalent to ~7.4m of eustatic sea level rise, but its impacts on current, past and future sea level, ocean circulation and European climate are poorly understood. Previous estimates of GrIS melt, from 26 years of satellite observations and temperature driven melt-models over 48 years, show a trend of increasing melt. There are however no runoff data of comparable duration with which to validate temperature-based runoff models, or relationships between the spatial extent of melt and runoff. Further, longer runoff records that extend GrIS melt records to centennial timescales will enable recently observed trends to be put into a better historical context. We measured Mg/Ca, δ18O and structural cell size in annual growth bands of red coralline algae to reconstruct: (1) near surface sea water temperature; and, (2) melt/runoff from the GrIS. (1) Temperature: we reconstructed the longest (1821-2009) sub-annual resolution record of water temperature in Disko Bugt (western Greenland) showing an abrupt change in temperature oscillation patterns during the 1920s which may be attributable to the interaction between atmospheric temperature and mass loss from Jakobshavn Isbrae glacier. (2) GrIS runoff: using samples from distal parts of Søndre Strømfjord we produced the first reconstruction of decadal (1939-2002) GrIS runoff. We observed significant negative relationships between historic runoff, relative salinity and marine summer temperature. Our reconstruction shows a trend of increasing reconstructed runoff since the mid 1980s. In situ summer marine temperatures followed a similar trend. We suggest that since 1939 atmospheric temperatures have been important in forcing runoff. Subject to locating in situ coralline algae samples, these methods can be applied across hundreds to thousands of years. These results show that our technique has significant potential to enhance understanding of runoff from large ice sheets as it will enable melt reconstruction over centennial-millennial time scales.; Red coralline algal thalli (Lithothamnion glaciale) similar to those used in Greenland reconstructions. Each thallus is 5cm in diameter.

Radiocarbon Anomalies of Surface Waters in the Glacial-to-Deglacial Low-to-Mid-Latitude Atlantic

NASA Astrophysics Data System (ADS)

Sarnthein, M.; Balmer, S.; Mudelsee, M.

2015-12-01

14C reservoir ages of surface waters are crucial for dating marine sediment records of the last 40,000 yr. In the low-latitude Atlantic, time series of 14C reservoir ages were reconstructed for five sites using the 14C plateau-tuning technique and supplemented by a reservoir age record from southern mid-latitudes (Skinner et al., 2010). Results suggest small-scale spatial and short-term (multi-centennial-scale) changes in reservoir age over last glacial-to-deglacial times, thus modify previously assigned calendar age chronologies by up to 500-2500 yr. During late peak glacial, enhanced summer winds off South Brazil and strengthened southerly trades off Namibia induced local reservoir ages of up to 900-1100 yr, whereas surface water ages in the Cariaco lagoon fell close to zero, a result of dominant CO2 exchange with the atmosphere. Near 16.05 ka, reservoir ages dropped to a minimum of 170-420 yr all over the South Atlantic, possibly the response to an immediately preceding short-term major rise in atmospheric pCO2 and East Antarctic temperatures. Our 14C reservoir ages provide a first basis for systematic data-model comparisons. They largely confirm model-based estimates for the LGM (Butzin et al., 2012) that have been derived from changes in both atmospheric 14C concentration and reductions in AMOC. Deviations are constrained to coastal upwelling zones in part insufficiently resolved by numerical models.

Intraoperative on-the-fly organ-mosaicking for laparoscopic surgery

PubMed Central

Reichard, Daniel; Bodenstedt, Sebastian; Suwelack, Stefan; Mayer, Benjamin; Preukschas, Anas; Wagner, Martin; Kenngott, Hannes; Müller-Stich, Beat; Dillmann, Rüdiger; Speidel, Stefanie

2015-01-01

Abstract. The goal of computer-assisted surgery is to provide the surgeon with guidance during an intervention, e.g., using augmented reality. To display preoperative data, soft tissue deformations that occur during surgery have to be taken into consideration. Laparoscopic sensors, such as stereo endoscopes, can be used to create a three-dimensional reconstruction of stereo frames for registration. Due to the small field of view and the homogeneous structure of tissue, reconstructing just one frame, in general, will not provide enough detail to register preoperative data, since every frame only contains a part of an organ surface. A correct assignment to the preoperative model is possible only if the patch geometry can be unambiguously matched to a part of the preoperative surface. We propose and evaluate a system that combines multiple smaller reconstructions from different viewpoints to segment and reconstruct a large model of an organ. Using graphics processing unit-based methods, we achieved four frames per second. We evaluated the system with in silico, phantom, ex vivo, and in vivo (porcine) data, using different methods for estimating the camera pose (optical tracking, iterative closest point, and a combination). The results indicate that the proposed method is promising for on-the-fly organ reconstruction and registration. PMID:26693166

Reconstructed storm tracks reveal three centuries of changing moisture delivery to North America

PubMed Central

Wise, Erika K.; Dannenberg, Matthew P.

2017-01-01

Moisture delivery to western North America is closely linked to variability in the westerly storm tracks of midlatitude cyclones, which are, in turn, modified by larger-scale features such as the El Niño–Southern Oscillation system. Instrumental and modeling data suggest that extratropical storm tracks may be intensifying and shifting poleward due to anthropogenic climate change, but it is difficult to separate recent trends from natural variability because of the large amount of decadal and longer variation in storm tracks and their limited instrumental record. We reconstruct cool-season, midlatitude Pacific storm-track position and intensity from 1693 to 1995 CE using existing tree-ring chronologies along with a network of newly developed chronologies from the U.S. Pacific Northwest, where small variations in storm-track position can have a major influence on hydroclimate patterns. Our results show high interannual-to-multidecadal variability in storm-track position and intensity over the past 303 years, with spectral signatures characteristic of tropical and northern Pacific influences. Comparison with reconstructions of precipitation and tropical sea surface temperature confirms the relationship between shifting drought patterns in the Pacific Northwest and storm-track variability through time and demonstrates the long-term influence of El Niño. These results allow us to place recent storm-track changes in the context of decadal and multidecadal fluctuations across the long-term record, showing that recent changes in storm-track intensity likely represent a warming-related increase amplified by natural decadal variability. PMID:28630900

Reconstructed storm tracks reveal three centuries of changing moisture delivery to North America.

PubMed

Wise, Erika K; Dannenberg, Matthew P

2017-06-01

Moisture delivery to western North America is closely linked to variability in the westerly storm tracks of midlatitude cyclones, which are, in turn, modified by larger-scale features such as the El Niño-Southern Oscillation system. Instrumental and modeling data suggest that extratropical storm tracks may be intensifying and shifting poleward due to anthropogenic climate change, but it is difficult to separate recent trends from natural variability because of the large amount of decadal and longer variation in storm tracks and their limited instrumental record. We reconstruct cool-season, midlatitude Pacific storm-track position and intensity from 1693 to 1995 CE using existing tree-ring chronologies along with a network of newly developed chronologies from the U.S. Pacific Northwest, where small variations in storm-track position can have a major influence on hydroclimate patterns. Our results show high interannual-to-multidecadal variability in storm-track position and intensity over the past 303 years, with spectral signatures characteristic of tropical and northern Pacific influences. Comparison with reconstructions of precipitation and tropical sea surface temperature confirms the relationship between shifting drought patterns in the Pacific Northwest and storm-track variability through time and demonstrates the long-term influence of El Niño. These results allow us to place recent storm-track changes in the context of decadal and multidecadal fluctuations across the long-term record, showing that recent changes in storm-track intensity likely represent a warming-related increase amplified by natural decadal variability.

Multiscale temporal variability and regional patterns in 555 years of conterminous U.S. streamflow

NASA Astrophysics Data System (ADS)

Ho, Michelle; Lall, Upmanu; Sun, Xun; Cook, Edward R.

2017-04-01

The development of paleoclimate streamflow reconstructions in the conterminous United States (CONUS) has provided water resource managers with improved insights into multidecadal and centennial scale variability that cannot be reliably detected using shorter instrumental records. Paleoclimate streamflow reconstructions have largely focused on individual catchments limiting the ability to quantify variability across the CONUS. The Living Blended Drought Atlas (LBDA), a spatially and temporally complete 555 year long paleoclimate record of summer drought across the CONUS, provides an opportunity to reconstruct and characterize streamflow variability at a continental scale. We explore the validity of the first paleoreconstructions of streamflow that span the CONUS informed by the LBDA targeting a set of U.S. Geological Survey streamflow sites. The reconstructions are skillful under cross validation across most of the country, but the variance explained is generally low. Spatial and temporal structures of streamflow variability are analyzed using hierarchical clustering, principal component analysis, and wavelet analyses. Nine spatially coherent clusters are identified. The reconstructions show signals of contemporary droughts such as the Dust Bowl (1930s) and 1950s droughts. Decadal-scale variability was detected in the late 1900s in the western U.S., however, similar modes of temporal variability were rarely present prior to the 1950s. The twentieth century featured longer wet spells and shorter dry spells compared with the preceding 450 years. Streamflows in the Pacific Northwest and Northeast are negatively correlated with the central U.S. suggesting the potential to mitigate some drought impacts by balancing economic activities and insurance pools across these regions during major droughts.

Assimilating the ICE-6G_C Reconstruction of the Latest Quaternary Ice Age Cycle Into Numerical Simulations of the Laurentide and Fennoscandian Ice Sheets

NASA Astrophysics Data System (ADS)

Stuhne, G. R.; Peltier, W. R.

2017-12-01

We analyze the effects of nudging 100 kyr numerical simulations of the Laurentide and Fennoscandian ice sheets toward the glacial isostatic adjustment-based (GIA-based) ICE-6G_C reconstruction of the most recent ice age cycle. Starting with the ice physics approximations of the PISM ice sheet model and the SeaRISE simulation protocols, we incorporate nudging at characteristic time scales, τf, through anomalous mass balance terms in the ice mass conservation equation. As should be expected, these mass balances exhibit physically unrealistic details arising from pure GIA-based reconstruction geometry when nudging is very strong (τf=20 years for North America), while weakly nudged (τf=1,000 years) solutions deviate from ICE-6G_C sufficiently to degrade its observational fit quality. For reasonable intermediate time scales (τf=100 years and 200 years), we perturbatively analyze nudged ice dynamics as a superposition of "leading-order smoothing" that diffuses ICE-6G_C in a physically and observationally consistent manner and "higher-order" deviations arising, for instance, from biases in the time dependence of surface climate boundary conditions. Based upon the relative deviations between respective nudged simulations in which these biases follow surface temperature from ice cores and eustatic sea level from marine sediment cores, we compute "ice core climate adjustments" that suggest how local paleoclimate observations may be applied to the systematic refinement of ICE-6G_C. Our results are consistent with a growing body of evidence suggesting that the geographical origins of Meltwater Pulse 1B (MWP1b) may lie primarily in North America as opposed to Antarctica (as reconstructed in ICE-6G_C).

Causes of global mean surface temperature slowdowns, trends and variations from months to a century, 1891-2015

NASA Astrophysics Data System (ADS)

Folland, C. K.; Boucher, O.; Colman, A.; Parker, D. E.

2017-12-01

The recent slowdown in the warming of global mean surface temperature (GST) has highlighted the influences of natural variability. This talk discusses reconstructions of the variations of GST down to the monthly time scale since 1891 using monthly forcing data. We show that most of the variations in annual, and to some extent sub-annual, GST since 1891 can be reproduced skillfully from known forcing factors external and internal to the climate system. This includes the slowdown in warming over about 1998-2013 where reconstruction skill is particularly high down to the multi-monthly time scale. The relative contributions of the several key forcing factors to GST continually vary, but most of the net warming since 1891 is reconstructed to be attributable to the net forcing due to increasing greenhouse gases and anthropogenic aerosols. Separate analyses are carried out for three periods of GST slowdown:- 1896-1910, 1941-1976, together with 1998-2013 and some of its sub periods. We also study two periods where strong warming occurred, 1911-1940 and 1977-1997. Comparisons are made with the skill of average GST provided by 40 CMIP5 models. In the recent 1998-2013 slowdown, TSI forcing appears to have caused significant cooling, particularly over 2001-2010. This is additional to well documented cooling effects of an increased frequency of La Nina events, a negative Interdecadal Pacific Oscillation and some increases in volcanic forcing. Although there are short-term features of the GST curve since 1891 that cannot be fully explained, the most serious disagreements between the reconstructions and observations occur in the Second World War, especially in 1944-1945. Here observed near worldwide SSTs may be biased significantly too warm. Despite this, our generally high reconstruction skill is consistent with a good understanding of the multiple causes of observed GST variations and the general veracity of the GST record since 1891.

Sea Surface Temperature and Seawater Oxygen Isotope Variability Recorded in a Madagascar Coral Record

NASA Astrophysics Data System (ADS)

Zinke, J.; Dullo, W. Chr; Eisenhauer, A.

2003-04-01

We analysed a 336 year coral oxygen isotope record off southwest Madagascar in the Mozambique Channel. Based on temporal variability of skeletal oxygen isotopes annual mean sea surface temperatures are reconstructed for the period from 1659 to 1995. Sr/Ca ratios were measured for selected windows with monthly resolution (1973 to 1995, 1863 to 1910, 1784 to 1809, 1688 to 1710) to validate the SST reconstructions derived from oxygen isotopes. The coral proxy data were validated against gridded SST data sets. The coral oxygen isotope record is coherent with Kaplan-SST and GISST2.3b on an interdecadal frequency of 17 years, which is the most prominent frequency band observed in this region. The Sr/Ca-SST agree well with SST observations in the validation period (1863 to 1910), whereas the d18O derived SST show largest discrepencies during this time interval. By taking into account the SST values derived from coral Sr/Ca, we were able to reconstruct d18O seawater variability. This indicates that d18O seawater variations contributed significantly to interannual and interdecadal variations in coral d18O. We propose that the local surface-ocean evaporation-precipitation balance and remote forcing by ENSO via South Equatorial Current and/or Indonesian throughflow variability may contribute to observed d18O variability. Our results indicate that coral d18O may be used to reconstruct temporal variations in the fresh water balance within the Indian Ocean on interannual to interdecadal time scales.

Central Tropical Pacific Variability And ENSO Response To Changing Climate Boundary Conditions: Evidence From Individual Line Island Foraminifera

NASA Astrophysics Data System (ADS)

Rustic, G. T.; Polissar, P. J.; Ravelo, A. C.; White, S. M.

2017-12-01

The El Niño Southern Oscillation (ENSO) plays a dominant role in Earth's climate variability. Paleoceanographic evidence suggests that ENSO has changed in the past, and these changes have been linked to large-scale climatic shifts. While a close relationship between ENSO evolution and climate boundary conditions has been predicted, testing these predictions remains challenging. These climate boundary conditions, including insolation, the mean surface temperature gradient of the tropical Pacific, global ice volume, and tropical thermocline depth, often co-vary and may work together to suppress or enhance the ocean-atmosphere feedbacks that drive ENSO variability. Furthermore, suitable paleo-archives spanning multiple climate states are sparse. We have aimed to test ENSO response to changing climate boundary conditions by generating new reconstructions of mixed-layer variability from sedimentary archives spanning the last three glacial-interglacial cycles from the Central Tropical Pacific Line Islands, where El Niño is strongly expressed. We analyzed Mg/Ca ratios from individual foraminifera to reconstruct mixed-layer variability at discrete time intervals representing combinations of climatic boundary conditions from the middle Holocene to Marine Isotope Stage (MIS) 8. We observe changes in the mixed-layer temperature variability during MIS 5 and during the previous interglacial (MIS 7) showing significant reductions in ENSO amplitude. Differences in variability during glacial and interglacial intervals are also observed. Additionally, we reconstructed mixed-layer and thermocline conditions using multi-species Mg/Ca and stable isotope measurements to more fully characterize the state of the Central Tropical Pacific during these intervals. These reconstructions provide us with a unique view of Central Tropical Pacific variability and water-column structure at discrete intervals under varying boundary climate conditions with which to assess factors that shape ENSO variability.

A monthly global paleo-reanalysis of the atmosphere from 1600 to 2005 for studying past climatic variations

PubMed Central

Franke, Jörg; Brönnimann, Stefan; Bhend, Jonas; Brugnara, Yuri

2017-01-01

Climatic variations at decadal scales such as phases of accelerated warming or weak monsoons have profound effects on society and economy. Studying these variations requires insights from the past. However, most current reconstructions provide either time series or fields of regional surface climate, which limit our understanding of the underlying dynamics. Here, we present the first monthly paleo-reanalysis covering the period 1600 to 2005. Over land, instrumental temperature and surface pressure observations, temperature indices derived from historical documents and climate sensitive tree-ring measurements were assimilated into an atmospheric general circulation model ensemble using a Kalman filtering technique. This data set combines the advantage of traditional reconstruction methods of being as close as possible to observations with the advantage of climate models of being physically consistent and having 3-dimensional information about the state of the atmosphere for various variables and at all points in time. In contrast to most statistical reconstructions, centennial variability stems from the climate model and its forcings, no stationarity assumptions are made and error estimates are provided. PMID:28585926

A statistical study on the F2 layer vertical variation during nighttime medium-scale traveling ionospheric disturbances

NASA Astrophysics Data System (ADS)

Ssessanga, Nicholas; Kim, Yong Ha; Jeong, Se-Heon

2017-03-01

A statistical study on the relationship between the perturbation component (ΔTEC (total electron content)) and the F2 layer peak height (hmF2) during nighttime medium-scale traveling ionospheric disturbances is presented. The results are obtained by using a time-dependent computerized ionospheric tomography (CIT) technique. This was realized by using slant total electron content observations from a dense Global Positioning System receiver network over Japan (with more than 1000 receivers), together with a multiplicative algebraic reconstruction technique. Reconstructions from CIT were validated by using ionosonde and occultation measurements. A total of 36 different time snapshots of the ionosphere when medium-scale traveling ionospheric disturbances (MSTIDs) were eminent were analyzed. These were obtained from a data set covering years from 2011 to 2014. The reconstructed surface wavefronts of ΔTEC and hmF2 structure were found to be aligned along the northwest-southeast direction. These results confirm that nighttime MSTIDs are driven by electrodynamic forces related to Perkins instability which explains the northwest-southeast wavefront alignment based on the F region electrodynamics. Furthermore, from the statistical analysis hmF2 varied quasiperiodically in altitude with dominant peak-to-peak amplitudes between 10 and 40 km. In addition, ΔTEC and hmF2 were 60% anticorrelated.

Estimating 3D Leaf and Stem Shape of Nursery Paprika Plants by a Novel Multi-Camera Photography System

PubMed Central

Zhang, Yu; Teng, Poching; Shimizu, Yo; Hosoi, Fumiki; Omasa, Kenji

2016-01-01

For plant breeding and growth monitoring, accurate measurements of plant structure parameters are very crucial. We have, therefore, developed a high efficiency Multi-Camera Photography (MCP) system combining Multi-View Stereovision (MVS) with the Structure from Motion (SfM) algorithm. In this paper, we measured six variables of nursery paprika plants and investigated the accuracy of 3D models reconstructed from photos taken by four lens types at four different positions. The results demonstrated that error between the estimated and measured values was small, and the root-mean-square errors (RMSE) for leaf width/length and stem height/diameter were 1.65 mm (R2 = 0.98) and 0.57 mm (R2 = 0.99), respectively. The accuracies of the 3D model reconstruction of leaf and stem by a 28-mm lens at the first and third camera positions were the highest, and the number of reconstructed fine-scale 3D model shape surfaces of leaf and stem is the most. The results confirmed the practicability of our new method for the reconstruction of fine-scale plant model and accurate estimation of the plant parameters. They also displayed that our system is a good system for capturing high-resolution 3D images of nursery plants with high efficiency. PMID:27314348

Use of the quasi-geostrophic dynamical framework to reconstruct the 3-D ocean state in a high-resolution realistic simulation of North Atlantic.

NASA Astrophysics Data System (ADS)

Fresnay, Simon; Ponte, Aurélien

2017-04-01

The quasi-geostrophic (QG) framework has been, is and will be still for years to come a cornerstone method linking observations with estimates of the ocean circulation and state. We have used here the QG framework to reconstruct dynamical variables of the 3-D ocean in a state-of-the-art high-resolution (1/60 deg, 300 vertical levels) numerical simulation of the North Atlantic (NATL60). The work was carried out in 3 boxes of the simulation: Gulf Stream, Azores and Reykjaness Ridge. In a first part, general diagnostics describing the eddying dynamics have been performed and show that the QG scaling verifies in general, at depths distant from mixed layer and bathymetric gradients. Correlations with surface observables variables (e.g. temperature, sea level) were computed and estimates of quasi-geostrophic potential vorticity (QGPV) were reconstructed by the means of regression laws. It is shown that that reconstruction of QGPV exhibits valuable skill for a restricted scale range, mainly using sea level as the variable of regression. Additional discussion is given, based on the flow balanced with QGPV. This work is part of the DIMUP project, aiming to improve our ability to operationnaly estimate the ocean state.

WASS: an open-source stereo processing pipeline for sea waves 3D reconstruction

NASA Astrophysics Data System (ADS)

Bergamasco, Filippo; Benetazzo, Alvise; Torsello, Andrea; Barbariol, Francesco; Carniel, Sandro; Sclavo, Mauro

2017-04-01

Stereo 3D reconstruction of ocean waves is gaining more and more popularity in the oceanographic community. In fact, recent advances of both computer vision algorithms and CPU processing power can now allow the study of the spatio-temporal wave fields with unprecedented accuracy, especially at small scales. Even if simple in theory, multiple details are difficult to be mastered for a practitioner so that the implementation of a 3D reconstruction pipeline is in general considered a complex task. For instance, camera calibration, reliable stereo feature matching and mean sea-plane estimation are all factors for which a well designed implementation can make the difference to obtain valuable results. For this reason, we believe that the open availability of a well-tested software package that automates the steps from stereo images to a 3D point cloud would be a valuable addition for future researches in this area. We present WASS, a completely Open-Source stereo processing pipeline for sea waves 3D reconstruction, available at http://www.dais.unive.it/wass/. Our tool completely automates the recovery of dense point clouds from stereo images by providing three main functionalities. First, WASS can automatically recover the extrinsic parameters of the stereo rig (up to scale) so that no delicate calibration has to be performed on the field. Second, WASS implements a fast 3D dense stereo reconstruction procedure so that an accurate 3D point cloud can be computed from each stereo pair. We rely on the well-consolidated OpenCV library both for the image stereo rectification and disparity map recovery. Lastly, a set of 2D and 3D filtering techniques both on the disparity map and the produced point cloud are implemented to remove the vast majority of erroneous points that can naturally arise while analyzing the optically complex nature of the water surface (examples are sun-glares, large white-capped areas, fog and water areosol, etc). Developed to be as fast as possible, WASS can process roughly four 5 MPixel stereo frames per minute (on a consumer i7 CPU) to produce a sequence of outlier-free point clouds with more than 3 million points each. Finally, it comes with an easy to use user interface and designed to be scalable on multiple parallel CPUs.

A national perspective on paleoclimate streamflow and water storage infrastructure in the conterminous United States

NASA Astrophysics Data System (ADS)

Ho, Michelle; Lall, Upmanu; Sun, Xun; Cook, Edward

2017-04-01

Large-scale water storage infrastructure in the Conterminous United States (CONUS) provides a means of regulating the temporal variability in water supply with storage capacities ranging from seasonal storage in the wetter east to multi-annual and decadal-scale storage in the drier west. Regional differences in water availability across the CONUS provides opportunities for optimizing water dependent economic activities, such as food and energy production, through storage and transportation. However, the ability to sufficiently regulate water supplies into the future is compromised by inadequate monitoring of non-federally-owned dams that make up around 97% of all dams. Furthermore, many of these dams are reaching or have exceeded their economic design life. Understanding the role of dams in the current and future landscape of water requirements in the CONUS is needed to prioritize dam safety remediation or identify where redundant dams may be removed. A national water assessment and planning process is needed for addressing water requirements, accounting for regional differences in water supply and demand, and the role of dams in such a landscape. Most dams in the CONUS were designed without knowledge of devastating floods and prolonged droughts detected in multi-centennial paleoclimate records, consideration of projected climate change, nor consideration of optimal operation across large-scale regions. As a step towards informing water supply across the CONUS we present a paleoclimate reconstruction of annual streamflow across the CONUS over the past 555 years using a spatially and temporally complete paleoclimate record of summer drought across the CONUS targeting a set of US Geological Survey streamflow sites. The spatial and temporal structures of national streamflow variability are analyzed using hierarchical clustering, principal component analysis, and wavelet analyses. The reconstructions show signals of contemporary droughts such as the Dust Bowl (1930s) and 1950s droughts. Decadal-scale variability was detected in the late 1900s in the western US, however, similar modes of temporal variability were rarely present prior to the 1950s. The 20th century featured longer wet spells and shorter dry spells compared with the preceding 450 years. Streamflow in the Pacific Northwest and Northeast are negatively correlated with the central US suggesting the potential to mitigate some drought impacts by balancing economic activities and insurance pools across these regions during major droughts. The converging issues of a slowly growing US population, evolving demands for food, energy, and water, aging dams, and reduced water storage capacity through decommissioning and sedimentation highlights the pressing need for a national water assessment and a subsequent national water plan. There are many factors that need to be understood in order to appropriately assess dam and reservoir requirements across the CONUS and to improve water use and flood protection efficiency. In addition to historical and paleoclimate-informed surface water supply, factors requiring consideration in planning for future dam and reservoir infrastructure include: -the role of conjunctive surface and groundwater storage and use; -basin-scale operational strategies to balance sectoral water demand; -projections of surface water supply; -projections of regional water demands; -impacts of water conservation; and -the influence of water policy and financial instruments.

The study of integration about measurable image and 4D production

NASA Astrophysics Data System (ADS)

Zhang, Chunsen; Hu, Pingbo; Niu, Weiyun

2008-12-01

In this paper, we create the geospatial data of three-dimensional (3D) modeling by the combination of digital photogrammetry and digital close-range photogrammetry. For large-scale geographical background, we make the establishment of DEM and DOM combination of three-dimensional landscape model based on the digital photogrammetry which uses aerial image data to make "4D" (DOM: Digital Orthophoto Map, DEM: Digital Elevation Model, DLG: Digital Line Graphic and DRG: Digital Raster Graphic) production. For the range of building and other artificial features which the users are interested in, we realize that the real features of the three-dimensional reconstruction adopting the method of the digital close-range photogrammetry can come true on the basis of following steps : non-metric cameras for data collection, the camera calibration, feature extraction, image matching, and other steps. At last, we combine three-dimensional background and local measurements real images of these large geographic data and realize the integration of measurable real image and the 4D production.The article discussed the way of the whole flow and technology, achieved the three-dimensional reconstruction and the integration of the large-scale threedimensional landscape and the metric building.

Genome-Scale Metabolic Reconstructions and Theoretical Investigation of Methane Conversion in Methylomicrobium buryatense Strain 5G(B1)

DOE PAGES

de la Torre, Andrea; Metivier, Aisha; Chu, Frances; ...

2015-11-25

Methane-utilizing bacteria (methanotrophs) are capable of growth on methane and are attractive systems for bio-catalysis. However, the application of natural methanotrophic strains to large-scale production of value-added chemicals/biofuels requires a number of physiological and genetic alterations. An accurate metabolic model coupled with flux balance analysis can provide a solid interpretative framework for experimental data analyses and integration.

Utility of the omentum in sacral reconstruction following total sacrectomy due to recurrent and irradiated giant cell tumour of the spine

PubMed Central

Unal, Cigdem; Eren, Guler Gamze; Isil, Eda; Alponat, Ahmet; Sarlak, Ahmet

2012-01-01

Reconstruction of the lumbosacral region after surgical excision of irradiated and recurrent spinal giant cell tumours remains a challenging problem. In this case report, we describe the use of the pedicled omentum flap in reconstruction of an irradiated and infected wide sacral defect of a 19-year-old male patient. The patient had radiotherapy and subsequent wide surgical resection after recurrence of the tumour. A myocutaneous flap from the gluteal area had failed previously. Local flap options could not be used because of the recent radiotherapy to the gluteal area. Since the patient had a laparotomy for tumour resection and a colostomy, abdominal muscles were not considered reliable for reconstructive procedures. A pedicled omentum flap was chosen as a reconstructive option because of its rich blood supply, large surface area, and angiogenic capacity. This report aims to describe the use of the pedicled omentum flap for reconstruction of the lumbosacral area following surgical resection of a spinal tumour, when gluteal and abdominal flap options for reconstruction are jeopardised. PMID:22754172

Utility of the omentum in sacral reconstruction following total sacrectomy due to recurrent and irradiated giant cell tumour of the spine.

PubMed

Unal, Cigdem; Eren, Guler Gamze; Isil, Eda; Alponat, Ahmet; Sarlak, Ahmet

2012-01-01

Reconstruction of the lumbosacral region after surgical excision of irradiated and recurrent spinal giant cell tumours remains a challenging problem. In this case report, we describe the use of the pedicled omentum flap in reconstruction of an irradiated and infected wide sacral defect of a 19-year-old male patient. The patient had radiotherapy and subsequent wide surgical resection after recurrence of the tumour. A myocutaneous flap from the gluteal area had failed previously. Local flap options could not be used because of the recent radiotherapy to the gluteal area. Since the patient had a laparotomy for tumour resection and a colostomy, abdominal muscles were not considered reliable for reconstructive procedures. A pedicled omentum flap was chosen as a reconstructive option because of its rich blood supply, large surface area, and angiogenic capacity. This report aims to describe the use of the pedicled omentum flap for reconstruction of the lumbosacral area following surgical resection of a spinal tumour, when gluteal and abdominal flap options for reconstruction are jeopardised.

Visual attention mitigates information loss in small- and large-scale neural codes.

PubMed

Sprague, Thomas C; Saproo, Sameer; Serences, John T

2015-04-01

The visual system transforms complex inputs into robust and parsimonious neural codes that efficiently guide behavior. Because neural communication is stochastic, the amount of encoded visual information necessarily decreases with each synapse. This constraint requires that sensory signals are processed in a manner that protects information about relevant stimuli from degradation. Such selective processing--or selective attention--is implemented via several mechanisms, including neural gain and changes in tuning properties. However, examining each of these effects in isolation obscures their joint impact on the fidelity of stimulus feature representations by large-scale population codes. Instead, large-scale activity patterns can be used to reconstruct representations of relevant and irrelevant stimuli, thereby providing a holistic understanding about how neuron-level modulations collectively impact stimulus encoding. Copyright © 2015 Elsevier Ltd. All rights reserved.

Large-scale imaging of cortical network activity with calcium indicators.

PubMed

Ikegaya, Yuji; Le Bon-Jego, Morgane; Yuste, Rafael

2005-06-01

Bulk loading of calcium indicators has provided a unique opportunity to reconstruct the activity of cortical networks with single-cell resolution. Here we describe the detailed methods of bulk loading of AM dyes we developed and have been improving for imaging with a spinning disk confocal microscope.

Oxygenation variability in Mejillones Bay, off northern Chile, during the last two centuries

NASA Astrophysics Data System (ADS)

Díaz-Ochoa, J. A.; Pantoja, S.; de Lange, G. J.; Lange, C. B.; Sánchez, G. E.; Acuña, V. R.; Muñoz, P.; Vargas, G.

2011-01-01

The Peru Chile Current ecosystem is characterized by high biological productivity and important fisheries. Although this system is likely to be severely affected by climate change, its response to current global warming is still uncertain. In this paper, we analyze 10-166 year-old sediments in two cores collected from Mejillones Bay, an anoxic sedimentary setting favorable for the preservation of proxies. Based on a 166-year chronology, we used proxies of bottom-water oxygenation (Mo, V, S, and the (lycopane + n-C35)/n-C31 ratio) and surface water productivity (biogenic opal, counts of diatom valves, biogenic Ba, organic carbon, and chlorins) to reconstruct environmental variations in Mejillones Bay. During the last two centuries, a shift took place in the coastal marine ecosystem of Bahia Mejillones at decadal scales. This shift was characterized by intense ENSO-like activity, large-scale fluctuations in biological export productivity and bottom water oxygenation, and increased eolian activity (inferred from Ti/Al and Zr/Al). This short-term variability was accompanied by a gradual increase of sulfidic conditions that has intensified since the early 1960s.

3D digitization methods based on laser excitation and active triangulation: a comparison

NASA Astrophysics Data System (ADS)

Aubreton, Olivier; Mériaudeau, Fabrice; Truchetet, Frédéric

2016-04-01

3D reconstruction of surfaces is an important topic in computer vision and corresponds to a large field of applications: industrial inspection, reverse engineering, object recognition, biometry, archeology… Because of the large varieties of applications, one can find in the literature a lot of approaches which can be classified into two families: passive and active [1]. Certainly because of their reliability, active approaches, using imaging system with an additional controlled light source, seem to be the most commonly used in the industrial field. In this domain, the 3D digitization approach based on active 3D triangulation has had important developments during the last ten years [2] and seems to be mature today if considering the important number of systems proposed by manufacturers. Unfortunately, the performances of active 3D scanners depend on the optical properties of the surface to digitize. As an example, on Fig 1.a, a 3D shape with a diffuse surface has been digitized with Comet V scanner (Steinbichler). The 3D reconstruction is presented on Fig 1.b. The same experiment was carried out on a similar object (same shape) but presenting a specular surface (Fig 1.c and Fig 1.d) ; it can clearly be observed, that the specularity influences of the performance of the digitization.

Electrical characteristics and thermal stability of HfO{sub 2} metal-oxide-semiconductor capacitors fabricated on clean reconstructed GaSb surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miyata, Noriyuki, E-mail: nori.miyata@aist.go.jp; Mori, Takahiro; Yasuda, Tetsuji

2014-06-09

HfO{sub 2}/GaSb interfaces fabricated by high-vacuum HfO{sub 2} deposition on clean reconstructed GaSb surfaces were examined to explore a thermally stable GaSb metal-oxide-semiconductor structure with low interface-state density (D{sub it}). Interface Sb-O bonds were electrically and thermally unstable, and post-metallization annealing at temperatures higher than 200 °C was required to stabilize the HfO{sub 2}/GaSb interfaces. However, the annealing led to large D{sub it} in the upper-half band gap. We propose that the decomposition products that are associated with elemental Sb atoms act as interface states, since a clear correlation between the D{sub it} and the Sb coverage on the initial GaSbmore » surfaces was observed.« less

Detection of submicron scale cracks and other surface anomalies using positron emission tomography

DOEpatents

Cowan, Thomas E.; Howell, Richard H.; Colmenares, Carlos A.

2004-02-17

Detection of submicron scale cracks and other mechanical and chemical surface anomalies using PET. This surface technique has sufficient sensitivity to detect single voids or pits of sub-millimeter size and single cracks or fissures of millimeter size; and single cracks or fissures of millimeter-scale length, micrometer-scale depth, and nanometer-scale length, micrometer-scale depth, and nanometer-scale width. This technique can also be applied to detect surface regions of differing chemical reactivity. It may be utilized in a scanning or survey mode to simultaneously detect such mechanical or chemical features over large interior or exterior surface areas of parts as large as about 50 cm in diameter. The technique involves exposing a surface to short-lived radioactive gas for a time period, removing the excess gas to leave a partial monolayer, determining the location and shape of the cracks, voids, porous regions, etc., and calculating the width, depth, and length thereof. Detection of 0.01 mm deep cracks using a 3 mm detector resolution has been accomplished using this technique.

CLANIMAE: Climatic and Anthropogenic Impacts on African Ecosystems

NASA Astrophysics Data System (ADS)

Verschuren, D.; André, L.; Mahy, G.; Cocquyt, C.; Plisnier, P.-D.; Gelorini, V.; Rumes, B.; Lebrun, J.; Bock, L.; Marchant, R.

2009-04-01

Global studies of historical land use focusing on the large-scale landscape change that can potentially affect global climate (via effects on surface albedo, aerosols, and the carbon cycle) have concluded that the impact of pre-colonial East African cultures on regional ecosystems was limited, due to very low mean population density. This contrasts with the paradigm in East African archaeology and paleoecology that the onset of anthropogenic deforestation started at least 2500 years ago, following the introduction of iron metallurgy by Bantu immigrants. This conflict highlights the present lack of real data on historical climate-environment-human interactions in East Africa, which are eminently relevant to sustainable natural resource management and biodiversity conservation in a future of continued population growth and global climate change. CLANIMAE responds to the urgent need of a correct long-term perspective to today's climate-environment-human interactions in East Africa, by reconstructing simultaneously the histories of past climate change and of vegetation and water-quality changes over the last 2500 years, through multi-disciplinary analysis of dated lake-sediment records. The climate reconstructions integrate information on biological, geochemical and sedimentological indicators of past changes in the water balance of the study lakes, which cover the climatological gradient from (sub-)humid western Uganda to semi-arid eastern Kenya. Reconstruction of past terrestrial vegetation dynamics is based on analyses of fossil plant pollen and phytoliths, plus the fossil spores of fungi associated with the excrements of large domestic animals as indicators of lake use by pastoralists. The evolution of water quality through time is reconstructed using silicon isotopes in diatom algae as proxy indicator for past phytoplankton productivity, and paleoecological analyses of fossil diatoms and aquatic macrophytes, following calibration of diatom and macrophyte species distribution against lake trophic status and turbidity in the modern-day regional lake gradient. The integrated paleoecological research method of this project addresses the question of past climate-environment-human relationships at the time scale at which the relevant processes have actually occurred. This will allow us to 1) separate the influences of natural climate variability and human activity on East African ecosystems, 2) determine the exact timing and relative magnitude of indigenous (pre-20th century) anthropogenic land clearance compared to recent landscape alteration, 3) determine the severity of lake water-quality losses due to siltation and excess nutrient input directly linked to deforestation and agriculture, compared to those associated with natural ecosystem variability, and 4) assess the resilience of African ecosystems, and prospects for the restoration of disturbed ecosystems if human pressure were to be reversed.

Water Isotope Proxy-Proxy and Proxy-Model Convergence for Late Pleistocene East Asian Monsoon Rainfall Reconstructions

NASA Astrophysics Data System (ADS)

Clemens, S. C.; Holbourn, A.; Kubota, Y.; Lee, K. E.; Liu, Z.; Chen, G.

2017-12-01

Confidence in reconstruction of East Asian paleomonsoon rainfall using precipitation isotope proxies is a matter of considerable debate, largely due to the lack of correlation between precipitation amount and isotopic composition in the present climate. We present four new, very highly resolved records spanning the past 300,000 years ( 200 year sample spacing) from IODP Site U1429 in the East China Sea. We demonstrate that all the orbital- and millennial-scale variance in the onshore Yangtze River Valley speleothem δ18O record1 is also embedded in the offshore Site U1429 seawater δ18O record (derived from the planktonic foraminifer Globigerinoides ruber and sea surface temperature reconstructions). Signal replication in these two independent terrestrial and marine archives, both controlled by the same monsoon system, uniquely identifies δ18O of precipitation as the primary driver of the precession-band variance in both records. This proxy-proxy convergence also eliminates a wide array of other drivers that have been called upon as potential contaminants to the precipitation δ18O signal recorded by these proxies. We compare East Asian precipitation isotope proxy records to precipitation amount from a CCSM3 transient climate model simulation of the past 300,000 years using realistic insolation, ice volume, greenhouse gasses, and sea level boundary conditions. This model-proxy comparison suggests that both Yangtze River Valley precipitation isotope proxies (seawater and speleothem δ18O) track changes in summer-monsoon rainfall amount at orbital time scales, as do precipitation isotope records from the Pearl River Valley2 (leaf wax δ2H) and Borneo3 (speleothem δ18O). Notably, these proxy records all have significantly different spectral structure indicating strongly regional rainfall patterns that are also consistent with model results. Transient, isotope-enabled model simulations will be necessary to more thoroughly evaluate these promising results, and to evaluate potentially distinct regional mechanisms linking rainfall amount to precipitation isotopes at orbital and millennial time scales in other monsoon regions. 1 Cheng et al., 10.1038/nature18591 2 Thomas et al., 10.1130/G36289.1 3 Carolin et al., 10.1016/j.epsl.2016.01.028

Fire and forest history at Mount Rushmore.

PubMed

Brown, Peter M; Wienk, Cody L; Symstad, Amy J

2008-12-01

Mount Rushmore National Memorial in the Black Hills of South Dakota is known worldwide for its massive sculpture of four of the United States' most respected presidents. The Memorial landscape also is covered by extensive ponderosa pine (Pinus ponderosa) forest that has not burned in over a century. We compiled dendroecological and forest structural data from 29 plots across the 517-ha Memorial and used fire behavior modeling to reconstruct the historical fire regime and forest structure and compare them to current conditions. The historical fire regime is best characterized as one of low-severity surface fires with occasional (> 100 years) patches (< 100 ha) of passive crown fire. We estimate that only approximately 3.3% of the landscape burned as crown fire during 22 landscape fire years (recorded at > or = 25% of plots) between 1529 and 1893. The last landscape fire was in 1893. Mean fire intervals before 1893 varied depending on spatial scale, from 34 years based on scar-to-scar intervals on individual trees to 16 years between landscape fire years. Modal fire intervals were 11-15 years and did not vary with scale. Fire rotation (the time to burn an area the size of the study area) was estimated to be 30 years for surface fire and 800+ years for crown fire. The current forest is denser and contains more small trees, fewer large trees, lower canopy base heights, and greater canopy bulk density than a reconstructed historical (1870) forest. Fire behavior modeling using the NEXUS program suggests that surface fires would have dominated fire behavior in the 1870 forest during both moderate and severe weather conditions, while crown fire would dominate in the current forest especially under severe weather. Changes in the fire regime and forest structure at Mount Rushmore parallel those seen in ponderosa pine forests from the southwestern United States. Shifts from historical to current forest structure and the increased likelihood of crown fire justify the need for forest restoration before a catastrophic wildfire occurs and adversely impacts the ecological and aesthetic setting of the Mount Rushmore sculpture.

Seismic safety in conducting large-scale blasts

NASA Astrophysics Data System (ADS)

Mashukov, I. V.; Chaplygin, V. V.; Domanov, V. P.; Semin, A. A.; Klimkin, M. A.

2017-09-01

In mining enterprises to prepare hard rocks for excavation a drilling and blasting method is used. With the approach of mining operations to settlements the negative effect of large-scale blasts increases. To assess the level of seismic impact of large-scale blasts the scientific staff of Siberian State Industrial University carried out expertise for coal mines and iron ore enterprises. Determination of the magnitude of surface seismic vibrations caused by mass explosions was performed using seismic receivers, an analog-digital converter with recording on a laptop. The registration results of surface seismic vibrations during production of more than 280 large-scale blasts at 17 mining enterprises in 22 settlements are presented. The maximum velocity values of the Earth’s surface vibrations are determined. The safety evaluation of seismic effect was carried out according to the permissible value of vibration velocity. For cases with exceedance of permissible values recommendations were developed to reduce the level of seismic impact.

Thin plate spline feature point matching for organ surfaces in minimally invasive surgery imaging

NASA Astrophysics Data System (ADS)

Lin, Bingxiong; Sun, Yu; Qian, Xiaoning

2013-03-01

Robust feature point matching for images with large view angle changes in Minimally Invasive Surgery (MIS) is a challenging task due to low texture and specular reflections in these images. This paper presents a new approach that can improve feature matching performance by exploiting the inherent geometric property of the organ surfaces. Recently, intensity based template image tracking using a Thin Plate Spline (TPS) model has been extended for 3D surface tracking with stereo cameras. The intensity based tracking is also used here for 3D reconstruction of internal organ surfaces. To overcome the small displacement requirement of intensity based tracking, feature point correspondences are used for proper initialization of the nonlinear optimization in the intensity based method. Second, we generate simulated images from the reconstructed 3D surfaces under all potential view positions and orientations, and then extract feature points from these simulated images. The obtained feature points are then filtered and re-projected to the common reference image. The descriptors of the feature points under different view angles are stored to ensure that the proposed method can tolerate a large range of view angles. We evaluate the proposed method with silicon phantoms and in vivo images. The experimental results show that our method is much more robust with respect to the view angle changes than other state-of-the-art methods.

Recurrent star-spot activity and differential rotation in KIC 11560447

NASA Astrophysics Data System (ADS)

Özavcı, I.; Şenavcı, H. V.; Işık, E.; Hussain, G. A. J.; O'Neal, D.; Yılmaz, M.; Selam, S. O.

2018-03-01

We present a detailed analysis of surface inhomogeneities on the K1-type subgiant component of the rapidly rotating eclipsing binary KIC 11560447, using high-precision Kepler light curves spanning nearly 4 yr, which corresponds to about 2800 orbital revolutions. We determine the system parameters precisely, using high-resolution spectra from the 2.1-m Otto Struve Telescope at the McDonald Observatory. We apply the maximum entropy method to reconstruct the relative longitudinal spot occupancy. Our numerical tests show that the procedure can recover large-scale random distributions of individually unresolved spots, and it can track the phase migration of up to three major spot clusters. By determining the drift rates of various spotted regions in orbital longitude, we suggest a way to constrain surface differential rotation and we show that the results are consistent with periodograms. The K1IV star exhibits two mildly preferred longitudes of emergence, indications of solar-like differential rotation, and a 0.5-1.3-yr recurrence period in star-spot emergence, accompanied by a secular increase in the axisymmetric component of spot occupancy.

How well can regional fluxes be derived from smaller-scale estimates?

NASA Technical Reports Server (NTRS)

Moore, Kathleen E.; Fitzjarrald, David R.; Ritter, John A.

1992-01-01

Regional surface fluxes are essential lower boundary conditions for large scale numerical weather and climate models and are the elements of global budgets of important trace gases. Surface properties affecting the exchange of heat, moisture, momentum and trace gases vary with length scales from one meter to hundreds of km. A classical difficulty is that fluxes have been measured directly only at points or along lines. The process of scaling up observations limited in space and/or time to represent larger areas was done by assigning properties to surface classes and combining estimated or calculated fluxes using an area weighted average. It is not clear that a simple area weighted average is sufficient to produce the large scale from the small scale, chiefly due to the effect of internal boundary layers, nor is it known how important the uncertainty is to large scale model outcomes. Simultaneous aircraft and tower data obtained in the relatively simple terrain of the western Alaska tundra were used to determine the extent to which surface type variation can be related to fluxes of heat, moisture, and other properties. Surface type was classified as lake or land with aircraft borne infrared thermometer, and flight level heat and moisture fluxes were related to surface type. The magnitude and variety of sampling errors inherent in eddy correlation flux estimation place limits on how well any flux can be known even in simple geometries.

Ionospheric-thermospheric UV tomography: 1. Image space reconstruction algorithms

NASA Astrophysics Data System (ADS)

Dymond, K. F.; Budzien, S. A.; Hei, M. A.

2017-03-01

We present and discuss two algorithms of the class known as Image Space Reconstruction Algorithms (ISRAs) that we are applying to the solution of large-scale ionospheric tomography problems. ISRAs have several desirable features that make them useful for ionospheric tomography. In addition to producing nonnegative solutions, ISRAs are amenable to sparse-matrix formulations and are fast, stable, and robust. We present the results of our studies of two types of ISRA: the Least Squares Positive Definite and the Richardson-Lucy algorithms. We compare their performance to the Multiplicative Algebraic Reconstruction and Conjugate Gradient Least Squares algorithms. We then discuss the use of regularization in these algorithms and present our new approach based on regularization to a partial differential equation.

RECONSTRUCTION AND ANALYSIS OF HISTORICAL CHANGES IN CARBON STORAGE IN ARCTIC TUNDRA

EPA Science Inventory

Surface air temperature in arctic regions has increased since pre-industrial times, raising concerns that warmer and possibly drier conditions have increased soil decomposition rates, thereby stimulating the release to the atmosphere of the large stores of carbon (C) in arctic so...

'The surface management system' (SuMS) database: a surface-based database to aid cortical surface reconstruction, visualization and analysis

NASA Technical Reports Server (NTRS)

Dickson, J.; Drury, H.; Van Essen, D. C.

2001-01-01

Surface reconstructions of the cerebral cortex are increasingly widely used in the analysis and visualization of cortical structure, function and connectivity. From a neuroinformatics perspective, dealing with surface-related data poses a number of challenges. These include the multiplicity of configurations in which surfaces are routinely viewed (e.g. inflated maps, spheres and flat maps), plus the diversity of experimental data that can be represented on any given surface. To address these challenges, we have developed a surface management system (SuMS) that allows automated storage and retrieval of complex surface-related datasets. SuMS provides a systematic framework for the classification, storage and retrieval of many types of surface-related data and associated volume data. Within this classification framework, it serves as a version-control system capable of handling large numbers of surface and volume datasets. With built-in database management system support, SuMS provides rapid search and retrieval capabilities across all the datasets, while also incorporating multiple security levels to regulate access. SuMS is implemented in Java and can be accessed via a Web interface (WebSuMS) or using downloaded client software. Thus, SuMS is well positioned to act as a multiplatform, multi-user 'surface request broker' for the neuroscience community.

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks

PubMed Central

Yamanaka, Ryota; Kitano, Hiroaki

2013-01-01

Elucidating gene regulatory network (GRN) from large scale experimental data remains a central challenge in systems biology. Recently, numerous techniques, particularly consensus driven approaches combining different algorithms, have become a potentially promising strategy to infer accurate GRNs. Here, we develop a novel consensus inference algorithm, TopkNet that can integrate multiple algorithms to infer GRNs. Comprehensive performance benchmarking on a cloud computing framework demonstrated that (i) a simple strategy to combine many algorithms does not always lead to performance improvement compared to the cost of consensus and (ii) TopkNet integrating only high-performance algorithms provide significant performance improvement compared to the best individual algorithms and community prediction. These results suggest that a priori determination of high-performance algorithms is a key to reconstruct an unknown regulatory network. Similarity among gene-expression datasets can be useful to determine potential optimal algorithms for reconstruction of unknown regulatory networks, i.e., if expression-data associated with known regulatory network is similar to that with unknown regulatory network, optimal algorithms determined for the known regulatory network can be repurposed to infer the unknown regulatory network. Based on this observation, we developed a quantitative measure of similarity among gene-expression datasets and demonstrated that, if similarity between the two expression datasets is high, TopkNet integrating algorithms that are optimal for known dataset perform well on the unknown dataset. The consensus framework, TopkNet, together with the similarity measure proposed in this study provides a powerful strategy towards harnessing the wisdom of the crowds in reconstruction of unknown regulatory networks. PMID:24278007

Zonal wavefront reconstruction in quadrilateral geometry for phase measuring deflectometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Lei; Xue, Junpeng; Gao, Bo

2017-06-14

There are wide applications for zonal reconstruction methods in slope-based metrology due to its good capability of reconstructing the local details on surface profile. It was noticed in the literature that large reconstruction errors occur when using zonal reconstruction methods designed for rectangular geometry to process slopes in a quadrilateral geometry, which is a more general geometry with phase measuring deflectometry. In this paper, we present a new idea for the zonal methods for quadrilateral geometry. Instead of employing the intermediate slopes to set up height-slope equations, we consider the height increment as a more general connector to establish themore » height-slope relations for least-squares regression. The classical zonal methods and interpolation-assisted zonal methods are compared with our proposal. Results of both simulation and experiment demonstrate the effectiveness of the proposed idea. In implementation, the modification on the classical zonal methods is addressed. Finally, the new methods preserve many good aspects of the classical ones, such as the ability to handle a large incomplete slope dataset in an arbitrary aperture, and the low computational complexity comparable with the classical zonal method. Of course, the accuracy of the new methods is much higher when integrating the slopes in quadrilateral geometry.« less

Measuring the universe with high-precision large-scale structure

NASA Astrophysics Data System (ADS)

Mehta, Kushal Tushar

Baryon acoustic oscillations (BAOs) are used to obtain precision measurements of cosmological parameters from large-scale surveys. While robust against most systematics, there are certain theoretical uncertainties that can affect BAO and galaxy clustering measurements. In this thesis I use data from the Sloan Digital Sky Survey (SDSS) to measure cosmological parameters and use N-body and smoothed-particle hydrodynamic (SPH) simulations to measure the effect of theoretical uncertainties by using halo occupation distributions (HODs). I investigate the effect of galaxy bias on BAO measurements by creating mock galaxy catalogs from large N-body simulations at z = 1. I find that there is no additional shift in the acoustic scale (0.10% +/- 0.10%) for the less biased HODs (b 3). I present the methodology and implementation of the simple one-step reconstruction technique introduced by Eisenstein et al. (2007) to biased tracers in N-body simulation. Reconstruction reduces the errorbars on the acoustic scale measurement by a factor of 1.5 - 2, and removes any additional shift due to galaxy bias for all HODs (0.07% +/- 0.15%) . Padmanabhan et al. (2012) and Xu et al. (2012) use this reconstruction technique in the SDSS DR7 data to measure DV (z = 0.35) (rsfidr s) = 1356 +/- 25 Mpc. Here I use this measurement in combination with measurements from the cosmic microwave background and the supernovae legacy survey to measure various cosmological parameters. I find the data consistent with the LambdaCDM Universe with a flat geometry. In particular, I measure H0 = 69.8 +/- 1.2 km/s/Mpc, w = 0.97 +/- 0.17, OK= -0.004 +/- 0.005 in the LambdaCDM, wCDM, and oCDM models respectively. Next, I measure the effect of large-scale (5 Mpc) halo environment density on the HOD by using an SPH simulation at z = 0, 0.35, 0.5, 0.75, 1.0$. I do not find any significant dependence of the HOD on the halo environment density for different galaxy mass thresholds, red and blue galaxies, and at different redshifts. I use the MultiDark N-body simualtion to measure the possible effect of environment density on the galaxy correlation function xi(r). I find that environment density enhances xi(r) by 3% at scales of 1 - 20 Mpc/h at z = 0 and up to 12% at 0.3 Mpc/h and 8% at 1 - 4 Mpc/h for z = 1.

Algorithmic aspects for the reconstruction of spatio-spectral data cubes in the perspective of the SKA

NASA Astrophysics Data System (ADS)

Mary, D.; Ferrari, A.; Ferrari, C.; Deguignet, J.; Vannier, M.

2016-12-01

With millions of receivers leading to TerraByte data cubes, the story of the giant SKA telescope is also that of collaborative efforts from radioastronomy, signal processing, optimization and computer sciences. Reconstructing SKA cubes poses two challenges. First, the majority of existing algorithms work in 2D and cannot be directly translated into 3D. Second, the reconstruction implies solving an inverse problem and it is not clear what ultimate limit we can expect on the error of this solution. This study addresses (of course partially) both challenges. We consider an extremely simple data acquisition model, and we focus on strategies making it possible to implement 3D reconstruction algorithms that use state-of-the-art image/spectral regularization. The proposed approach has two main features: (i) reduced memory storage with respect to a previous approach; (ii) efficient parallelization and ventilation of the computational load over the spectral bands. This work will allow to implement and compare various 3D reconstruction approaches in a large scale framework.

Remote microscopy and volumetric imaging on the surface of icy satellites

NASA Astrophysics Data System (ADS)

Soto, Alejandro; Nowicki, Keith; Howett, Carly; Feldkhun, Daniel; Retherford, Kurt D.

2017-10-01

With NASA PIDDP support we have applied recent advancements in Fourier-domain microscopy to develop an instrument capable of microscopic imaging from meter-scale distances for use on a planetary lander on the surface of an icy satellite or other planetary bodies. Without moving parts, our instrument projects dynamic patterns of laser light onto a distant target using a lightweight large-aperture reflector, which then collects the light scattered or fluoresced by the target on a fast photon-bucket detector. Using Fourier Transform based techniques, we reconstruct an image from the detected light. The remote microscope has been demonstrated to produce 2D images with better than 15 micron lateral resolution for targets at a distance of 5 meters and is capable of linearly proportionally higher resolution at shorter distances. The remote microscope is also capable of providing three-dimensional (3D) microscopic imaging capabilities, allowing future surface scientists to explore the morphology of microscopic features in surface ices, for example. The instrument enables microscopic in-situ imaging during day or night without the use of a robotic arm, greatly facilitating the surface operations for a lander or rover while expanding the area of investigation near a landing site for improved science targeting. We are developing this remote microscope for in-situ planetary exploration as a collaboration between the Southwest Research Institute, LambdaMetrics, and the University of Colorado.

Feature-constrained surface reconstruction approach for point cloud data acquired with 3D laser scanner

NASA Astrophysics Data System (ADS)

Wang, Yongbo; Sheng, Yehua; Lu, Guonian; Tian, Peng; Zhang, Kai

2008-04-01

Surface reconstruction is an important task in the field of 3d-GIS, computer aided design and computer graphics (CAD & CG), virtual simulation and so on. Based on available incremental surface reconstruction methods, a feature-constrained surface reconstruction approach for point cloud is presented. Firstly features are extracted from point cloud under the rules of curvature extremes and minimum spanning tree. By projecting local sample points to the fitted tangent planes and using extracted features to guide and constrain the process of local triangulation and surface propagation, topological relationship among sample points can be achieved. For the constructed models, a process named consistent normal adjustment and regularization is adopted to adjust normal of each face so that the correct surface model is achieved. Experiments show that the presented approach inherits the convenient implementation and high efficiency of traditional incremental surface reconstruction method, meanwhile, it avoids improper propagation of normal across sharp edges, which means the applicability of incremental surface reconstruction is greatly improved. Above all, appropriate k-neighborhood can help to recognize un-sufficient sampled areas and boundary parts, the presented approach can be used to reconstruct both open and close surfaces without additional interference.

Toward a Reconstruction of the Atlantic Multidecadal Oscillation Using Shell-based Records from Coastal Northern Norway

NASA Astrophysics Data System (ADS)

Mette, M.; Wanamaker, A. D.; Carroll, M.; Ambrose, W. G., Jr.; Retelle, M.

2016-02-01

North Atlantic sea surface temperatures over the past 150 years have exhibited multidecadal variability, switching between relatively warm and cool periods, described by the Atlantic Multidecadal Oscillation (AMO). The influence, persistence, and causes of the AMO, however, are debated because instrumental records of North Atlantic sea surface temperatures only capture 2 cycles of this 60 to 80 year mode. Thus far, AMO reconstructions have been largely based on terrestrial archives despite the fact that the AMO is an oceanic mode. Proxy records from the marine realm are therefore necessary to better understand the behavior of the AMO over recent centuries. We present continuous, annual shell-based records of oxygen isotopes and growth from the long-lived marine bivalve Arctica islandica from coastal northern Norway (71 °N) from 1900-2012 that strongly relate to the instrumental AMO record (r = -0.59, p < 0.01). We performed calibration/verification analysis in order to assess the potential for these records to contribute to AMO reconstructions. We also compare our record with other proxy reconstructions of AMO variability over the past century. Our results show that extending shell-based records to past centuries will provide valuable information about AMO variability.

Surface Structure Spread Single Crystals (S4C): Preparation and characterization

NASA Astrophysics Data System (ADS)

de Alwis, A.; Holsclaw, B.; Pushkarev, V. V.; Reinicker, A.; Lawton, T. J.; Blecher, M. E.; Sykes, E. C. H.; Gellman, A. J.

2013-02-01

A set of six spherically curved Cu single crystals referred to as Surface Structure Spread Single Crystals (S4Cs) has been prepared in such a way that their exposed surfaces collectively span all possible crystallographic surface orientations that can be cleaved from the face centered cubic Cu lattice. The method for preparing these S4Cs and for finding the high symmetry pole point is described. Optical profilometry has been used to determine the true shapes of the S4Cs and show that over the majority of the surface, the shape is extremely close to that of a perfect sphere. The local orientations of the surfaces lie within ± 1° of the orientation expected on the basis of the spherical shape; their orientation is as good as that of many commercially prepared single crystals. STM imaging has been used to characterize the atomic level structure of the Cu(111) ± 11°-S4C. This has shown that the average step densities and the average step orientations match those expected based on the spherical shape. In other words, although there is some distribution of step-step spacing and step orientations, there is no evidence of large scale reconstruction or faceting. The Cu S4Cs have local structures based on the ideal termination of the face centered cubic Cu lattice in the direction of termination. The set of Cu S4Cs will serve as the basis for high throughput investigations of structure sensitive surface chemistry on Cu.

Combining Livestock Production Information in a Process-Based Vegetation Model to Reconstruct the History of Grassland Management

NASA Technical Reports Server (NTRS)

Chang, Jinfeng; Ciais, Philippe; Herrero, Mario; Havlik, Petr; Campioli, Matteo; Zhang, Xianzhou; Bai, Yongfei; Viovy, Nicolas; Joiner, Joanna; Wang, Xuhui;

Past and present cosmic structure in the SDSS DR7 main sample

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jasche, J.; Leclercq, F.; Wandelt, B.D., E-mail: jasche@iap.fr, E-mail: florent.leclercq@polytechnique.org, E-mail: wandelt@iap.fr

2015-01-01

We present a chrono-cosmography project, aiming at the inference of the four dimensional formation history of the observed large scale structure from its origin to the present epoch. To do so, we perform a full-scale Bayesian analysis of the northern galactic cap of the Sloan Digital Sky Survey (SDSS) Data Release 7 main galaxy sample, relying on a fully probabilistic, physical model of the non-linearly evolved density field. Besides inferring initial conditions from observations, our methodology naturally and accurately reconstructs non-linear features at the present epoch, such as walls and filaments, corresponding to high-order correlation functions generated by late-time structuremore » formation. Our inference framework self-consistently accounts for typical observational systematic and statistical uncertainties such as noise, survey geometry and selection effects. We further account for luminosity dependent galaxy biases and automatic noise calibration within a fully Bayesian approach. As a result, this analysis provides highly-detailed and accurate reconstructions of the present density field on scales larger than ∼ 3 Mpc/h, constrained by SDSS observations. This approach also leads to the first quantitative inference of plausible formation histories of the dynamic large scale structure underlying the observed galaxy distribution. The results described in this work constitute the first full Bayesian non-linear analysis of the cosmic large scale structure with the demonstrated capability of uncertainty quantification. Some of these results will be made publicly available along with this work. The level of detail of inferred results and the high degree of control on observational uncertainties pave the path towards high precision chrono-cosmography, the subject of simultaneously studying the dynamics and the morphology of the inhomogeneous Universe.« less

360° Fourier transform profilometry in surface reconstruction for fluorescence molecular tomography.

PubMed

Shi, Bi'er; Zhang, Bin; Liu, Fei; Luo, Jianwen; Bai, Jing

2013-05-01

Fluorescence molecular tomography (FMT) is an emerging tool in the observation of diseases. A fast and accurate surface reconstruction of the experimental object is needed as a boundary constraint for FMT reconstruction. In this paper, an automatic, noncontact, and 3-D surface reconstruction method named 360◦ Fourier transform profilometry (FTP) is proposed to reconstruct 3-D surface profiles for FMT system. This method can reconstruct 360◦ integrated surface profiles utilizing the single-frame FTP at different angles. Results show that the relative mean error of the surface reconstruction of this method is less than 1.4% in phantom experiments, and is no more than 2.9% in mouse experiments in vivo. Compared with the Radon transform method, the proposed method reduces the computation time by more than 90% with a minimal error increase. At last, a combined 360◦ FTP/FMT experiment is conducted on a nude mouse. Not only can the 360◦ FTP system operate with the FMT system simultaneously, but it can also help to monitor the status of animals. Moreover, the 360◦ FTP system is independent of FMT system and can be performed to reconstruct the surface by itself.

3D range-gated super-resolution imaging based on stereo matching for moving platforms and targets

NASA Astrophysics Data System (ADS)

Sun, Liang; Wang, Xinwei; Zhou, Yan

2017-11-01

3D range-gated superresolution imaging is a novel 3D reconstruction technique for target detection and recognition with good real-time performance. However, for moving targets or platforms such as airborne, shipborne, remote operated vehicle and autonomous vehicle, 3D reconstruction has a large error or failure. In order to overcome this drawback, we propose a method of stereo matching for 3D range-gated superresolution reconstruction algorithm. In experiment, the target is a doll of Mario with a height of 38cm at the location of 34m, and we obtain two successive frame images of the Mario. To confirm our method is effective, we transform the original images with translation, rotation, scale and perspective, respectively. The experimental result shows that our method has a good result of 3D reconstruction for moving targets or platforms.

Large-scale building scenes reconstruction from close-range images based on line and plane feature

NASA Astrophysics Data System (ADS)

Ding, Yi; Zhang, Jianqing

2007-11-01

Automatic generate 3D models of buildings and other man-made structures from images has become a topic of increasing importance, those models may be in applications such as virtual reality, entertainment industry and urban planning. In this paper we address the main problems and available solution for the generation of 3D models from terrestrial images. We first generate a coarse planar model of the principal scene planes and then reconstruct windows to refine the building models. There are several points of novelty: first we reconstruct the coarse wire frame model use the line segments matching with epipolar geometry constraint; Secondly, we detect the position of all windows in the image and reconstruct the windows by established corner points correspondences between images, then add the windows to the coarse model to refine the building models. The strategy is illustrated on image triple of college building.

Sensitivity of proxies on non-linear interactions in the climate system

PubMed Central

Schultz, Johannes A.; Beck, Christoph; Menz, Gunter; Neuwirth, Burkhard; Ohlwein, Christian; Philipp, Andreas

2015-01-01

Recent climate change is affecting the earth system to an unprecedented extent and intensity and has the potential to cause severe ecological and socioeconomic consequences. To understand natural and anthropogenic induced processes, feedbacks, trends, and dynamics in the climate system, it is also essential to consider longer timescales. In this context, annually resolved tree-ring data are often used to reconstruct past temperature or precipitation variability as well as atmospheric or oceanic indices such as the North Atlantic Oscillation (NAO) or the Atlantic Multidecadal Oscillation (AMO). The aim of this study is to assess weather-type sensitivity across the Northern Atlantic region based on two tree-ring width networks. Our results indicate that nonstationarities in superordinate space and time scales of the climate system (here synoptic- to global scale, NAO, AMO) can affect the climate sensitivity of tree-rings in subordinate levels of the system (here meso- to synoptic scale, weather-types). This scale bias effect has the capability to impact even large multiproxy networks and the ability of these networks to provide information about past climate conditions. To avoid scale biases in climate reconstructions, interdependencies between the different scales in the climate system must be considered, especially internal ocean/atmosphere dynamics. PMID:26686001

Parameterizing atmosphere-land surface exchange for climate models with satellite data: A case study for the Southern Great Plains CART site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, W.

High-resolution satellite data provide detailed, quantitative descriptions of land surface characteristics over large areas so that objective scale linkage becomes feasible. With the aid of satellite data, Sellers et al. and Wood and Lakshmi examined the linearity of processes scaled up from 30 m to 15 km. If the phenomenon is scale invariant, then the aggregated value of a function or flux is equivalent to the function computed from aggregated values of controlling variables. The linear relation may be realistic for limited land areas having no large surface contrasts to cause significant horizontal exchange. However, for areas with sharp surfacemore » contrasts, horizontal exchange and different dynamics in the atmospheric boundary may induce nonlinear interactions, such as at interfaces of land-water, forest-farm land, and irrigated crops-desert steppe. The linear approach, however, represents the simplest scenario, and is useful for developing an effective scheme for incorporating subgrid land surface processes into large-scale models. Our studies focus on coupling satellite data and ground measurements with a satellite-data-driven land surface model to parameterize surface fluxes for large-scale climate models. In this case study, we used surface spectral reflectance data from satellite remote sensing to characterize spatial and temporal changes in vegetation and associated surface parameters in an area of about 350 {times} 400 km covering the southern Great Plains (SGP) Cloud and Radiation Testbed (CART) site of the US Department of Energy`s Atmospheric Radiation Measurement (ARM) Program.« less

Band gaps and localization of surface water waves over large-scale sand waves with random fluctuations

NASA Astrophysics Data System (ADS)

Zhang, Yu; Li, Yan; Shao, Hao; Zhong, Yaozhao; Zhang, Sai; Zhao, Zongxi

2012-06-01

Band structure and wave localization are investigated for sea surface water waves over large-scale sand wave topography. Sand wave height, sand wave width, water depth, and water width between adjacent sand waves have significant impact on band gaps. Random fluctuations of sand wave height, sand wave width, and water depth induce water wave localization. However, random water width produces a perfect transmission tunnel of water waves at a certain frequency so that localization does not occur no matter how large a disorder level is applied. Together with theoretical results, the field experimental observations in the Taiwan Bank suggest band gap and wave localization as the physical mechanism of sea surface water wave propagating over natural large-scale sand waves.

Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs.

PubMed

Mishchenko, Yuriy

2009-01-30

We describe an approach for automation of the process of reconstruction of neural tissue from serial section transmission electron micrographs. Such reconstructions require 3D segmentation of individual neuronal processes (axons and dendrites) performed in densely packed neuropil. We first detect neuronal cell profiles in each image in a stack of serial micrographs with multi-scale ridge detector. Short breaks in detected boundaries are interpolated using anisotropic contour completion formulated in fuzzy-logic framework. Detected profiles from adjacent sections are linked together based on cues such as shape similarity and image texture. Thus obtained 3D segmentation is validated by human operators in computer-guided proofreading process. Our approach makes possible reconstructions of neural tissue at final rate of about 5 microm3/manh, as determined primarily by the speed of proofreading. To date we have applied this approach to reconstruct few blocks of neural tissue from different regions of rat brain totaling over 1000microm3, and used these to evaluate reconstruction speed, quality, error rates, and presence of ambiguous locations in neuropil ssTEM imaging data.

Intensity Interferometry: Imaging Stars with Kilometer Baselines

NASA Astrophysics Data System (ADS)

Dravins, Dainis

2018-04-01

Microarcsecond imaging will reveal stellar surfaces but requires kilometer-scale interferometers. Intensity interferometry circumvents atmospheric turbulence by correlating intensity fluctuations between independent telescopes. Telescopes connect only electronically, and the error budget relates to electronic timescales of nanoseconds (light-travel distances on the order of a meter), enabling the use of imperfect optics in a turbulent atmosphere. Once pioneered by Hanbury Brown and Twiss, digital versions have now been demonstrated in the laboratory, reconstructing diffraction-limited images from hundreds of optical baselines. Arrays of Cherenkov telescopes (primarily erected for gamma-ray studies) will extend over a few km, enabling an optical equivalent of radio interferometers. Resolutions in the tens of microarcseconds will resolve rotationally flattened stars with their circumstellar disks and winds, or possibly even the silhouettes of transiting exoplanets. Applying the method to mirror segments in extremely large telescopes (even with an incompletely filled main mirror, poor seeing, no adaptive optics), the diffraction limit in the blue may be reached.

Structure of a Bacterial Dynamin-like Protein Lipid Tube Provides a Mechanism For Assembly and Membrane Curving

PubMed Central

Low, Harry H.; Sachse, Carsten; Amos, Linda A.; Löwe, Jan

2009-01-01

Summary Proteins of the dynamin superfamily mediate membrane fission, fusion, and restructuring events by polymerizing upon lipid bilayers and forcing regions of high curvature. In this work, we show the electron cryomicroscopy reconstruction of a bacterial dynamin-like protein (BDLP) helical filament decorating a lipid tube at ∼11 Å resolution. We fitted the BDLP crystal structure and produced a molecular model for the entire filament. The BDLP GTPase domain dimerizes and forms the tube surface, the GTPase effector domain (GED) mediates self-assembly, and the paddle region contacts the lipids and promotes curvature. Association of BDLP with GMPPNP and lipid induces radical, large-scale conformational changes affecting polymerization. Nucleotide hydrolysis seems therefore to be coupled to polymer disassembly and dissociation from lipid, rather than membrane restructuring. Observed structural similarities with rat dynamin 1 suggest that our results have broad implication for other dynamin family members. PMID:20064379

4D Hyperspherical Harmonic (HyperSPHARM) Representation of Multiple Disconnected Brain Subcortical Structures

PubMed Central

Hosseinbor, A. Pasha; Chung, Moo K.; Schaefer, Stacey M.; van Reekum, Carien M.; Peschke-Schmitz, Lara; Sutterer, Matt; Alexander, Andrew L.; Davidson, Richard J.

2014-01-01

We present a novel surface parameterization technique using hyperspherical harmonics (HSH) in representing compact, multiple, disconnected brain subcortical structures as a single analytic function. The proposed hyperspherical harmonic representation (HyperSPHARM) has many advantages over the widely used spherical harmonic (SPHARM) parameterization technique. SPHARM requires flattening 3D surfaces to 3D sphere which can be time consuming for large surface meshes, and can’t represent multiple disconnected objects with single parameterization. On the other hand, HyperSPHARM treats 3D object, via simple stereographic projection, as a surface of 4D hypersphere with extremely large radius, hence avoiding the computationally demanding flattening process. HyperSPHARM is shown to achieve a better reconstruction with only 5 basis compared to SPHARM that requires more than 441. PMID:24505716

A low-cost, scalable, current-sensing digital headstage for high channel count μECoG.

PubMed

Trumpis, Michael; Insanally, Michele; Zou, Jialin; Elsharif, Ashraf; Ghomashchi, Ali; Sertac Artan, N; Froemke, Robert C; Viventi, Jonathan

2017-04-01

High channel count electrode arrays allow for the monitoring of large-scale neural activity at high spatial resolution. Implantable arrays featuring many recording sites require compact, high bandwidth front-end electronics. In the present study, we investigated the use of a small, light weight, and low cost digital current-sensing integrated circuit for acquiring cortical surface signals from a 61-channel micro-electrocorticographic (μECoG) array. We recorded both acute and chronic μECoG signal from rat auditory cortex using our novel digital current-sensing headstage. For direct comparison, separate recordings were made in the same anesthetized preparations using an analog voltage headstage. A model of electrode impedance explained the transformation between current- and voltage-sensed signals, and was used to reconstruct cortical potential. We evaluated the digital headstage using several metrics of the baseline and response signals. The digital current headstage recorded neural signal with similar spatiotemporal statistics and auditory frequency tuning compared to the voltage signal. The signal-to-noise ratio of auditory evoked responses (AERs) was significantly stronger in the current signal. Stimulus decoding based on true and reconstructed voltage signals were not significantly different. Recordings from an implanted system showed AERs that were detectable and decodable for 52 d. The reconstruction filter mitigated the thermal current noise of the electrode impedance and enhanced overall SNR. We developed and validated a novel approach to headstage acquisition that used current-input circuits to independently digitize 61 channels of μECoG measurements of the cortical field. These low-cost circuits, intended to measure photo-currents in digital imaging, not only provided a signal representing the local cortical field with virtually the same sensitivity and specificity as a traditional voltage headstage but also resulted in a small, light headstage that can easily be scaled to record from hundreds of channels.

Influence of Tree-Scale Environmental Variability on Tree-Ring Reconstructions of Temperature at Sonora Pass, CA

NASA Astrophysics Data System (ADS)

Ma, L.; Stine, A.

2016-12-01

Tree-ring width from treeline environments tend to covary with local interannual temperature variabilities. However, other environmental factors such as moisture and light availability may further modulate tree growth in cold climates. We investigate the influence of various environmental factors on a tree-ring record from a research plot near Sonora Pass, CA (38.32N, 119.64W; elev. 3130 m). This treeline ecotone is dominated by whitebark pine (Pinus albicaulis) growing as individuals and as stands, and at the transition between tree form and krummholtz. We surveyed all trees in the 160m x 90m site, mapping and coring all trees with a diameter at breast height greater than 10 cm. We use survey data to test for an influence of inter-tree competition on growth. We also test for modulation of growth by variation in distance from surface water, aspect and slope, and soil types. Initial result shows a relationship between tree ring width and local May-July temperature (R = 0.33, p < 0.01), suggesting summer temperature as a large-scale control on growth. Incorporating the tree-level metadata, we test for the effect of spatial variability on mean growth rate and on reconstructed temperatures. Trees that have larger or closer neighboring trees experience greater competition, and we hypothesize that competition will be inversely related to average growth rate. Further, we test the sensitivity of ring-width interannual variability to other non-temperature environmental drivers such as moisture availability, light competition, and spatial relations in the microenvironment. We hypothesize that trees that have ready access to light and water will likely produce ring records more closely correlated with the temperature record, and thus will produce a temperature reconstruction with a higher signal-to-noise ratio; whereas trees that experience more microenvironment limitations or competition will produce ring records resembling temperature and additional environmental factors or will contain more noise.

Coral reconstruction of Holocene oscillations in the extent of the Indo-Pacific Warm Pool

NASA Astrophysics Data System (ADS)

Abram, Nerilie; McGregor, Helen; Gagan, Michael

2010-05-01

The Indo-Pacific Warm Pool (IPWP) plays a key role in the propagation and amplification of climate changes through its influence on the global distribution of heat and water vapour. However, little is known about past changes in the size and position of the IPWP. We use a total of 48 modern and fossil coral records from the Mentawai Islands (Sumatra, Indonesia) and Muschu/Koil Islands (Papua New Guinea) to reconstruct oscillations in the extent of the IPWP since the mid-Holocene. We firstly show that reliable estimates of mean sea surface temperature (SST) can be obtained from fossil corals by using low-resolution Sr/Ca analysis of a suite of corals to overcome the large uncertainties associated with mean Sr/Ca-SST estimates from individual coral colonies. The coral records indicate that the southeastern and southwestern margins of the IPWP were predominantly 1.2oC ± 0.3oC cooler than present during the mid-Holocene, and we suggest that this was due to a contraction of the southern margins of the IPWP associated with the more northerly position of the ITCZ. Comparison with speleothem records of Asian monsoon rainfall further indicates that short-lived shifts to warmer than present SSTs at the coral sites during the mid-Holocene coincide with intervals of abrupt monsoon weakening (and southward displacements of the ITCZ). Examination of our coral reconstruction alongside the Kilimanjaro ice core record suggests that the Indian Ocean Dipole also adopted a more positive mean state during the mid-Holocene when the southern margins of the IPWP contracted. These results suggest that the Asian monsoon-IOD interaction that exists at interannual time scales also persists over centennial to millennial scales. The dynamic and inter-connected behaviour of the IPWP with tropical climate systems during the mid-Holocene highlights the fundamental importance of the warm pool region for understanding climate change throughout the tropics and beyond.

A low-cost, scalable, current-sensing digital headstage for high channel count μECoG

NASA Astrophysics Data System (ADS)

Trumpis, Michael; Insanally, Michele; Zou, Jialin; Elsharif, Ashraf; Ghomashchi, Ali; Sertac Artan, N.; Froemke, Robert C.; Viventi, Jonathan

2017-04-01

Objective. High channel count electrode arrays allow for the monitoring of large-scale neural activity at high spatial resolution. Implantable arrays featuring many recording sites require compact, high bandwidth front-end electronics. In the present study, we investigated the use of a small, light weight, and low cost digital current-sensing integrated circuit for acquiring cortical surface signals from a 61-channel micro-electrocorticographic (μECoG) array. Approach. We recorded both acute and chronic μECoG signal from rat auditory cortex using our novel digital current-sensing headstage. For direct comparison, separate recordings were made in the same anesthetized preparations using an analog voltage headstage. A model of electrode impedance explained the transformation between current- and voltage-sensed signals, and was used to reconstruct cortical potential. We evaluated the digital headstage using several metrics of the baseline and response signals. Main results. The digital current headstage recorded neural signal with similar spatiotemporal statistics and auditory frequency tuning compared to the voltage signal. The signal-to-noise ratio of auditory evoked responses (AERs) was significantly stronger in the current signal. Stimulus decoding based on true and reconstructed voltage signals were not significantly different. Recordings from an implanted system showed AERs that were detectable and decodable for 52 d. The reconstruction filter mitigated the thermal current noise of the electrode impedance and enhanced overall SNR. Significance. We developed and validated a novel approach to headstage acquisition that used current-input circuits to independently digitize 61 channels of μECoG measurements of the cortical field. These low-cost circuits, intended to measure photo-currents in digital imaging, not only provided a signal representing the local cortical field with virtually the same sensitivity and specificity as a traditional voltage headstage but also resulted in a small, light headstage that can easily be scaled to record from hundreds of channels.

A low-cost, scalable, current-sensing digital headstage for high channel count μECoG

PubMed Central

Trumpis, Michael; Insanally, Michele; Zou, Jialin; Elsharif, Ashraf; Ghomashchi, Ali; Artan, N. Sertac; Froemke, Robert C.; Viventi, Jonathan

2017-01-01

Objective High channel count electrode arrays allow for the monitoring of large-scale neural activity at high spatial resolution. Implantable arrays featuring many recording sites require compact, high bandwidth front-end electronics. In the present study, we investigated the use of a small, light weight, and low cost digital current-sensing integrated circuit for acquiring cortical surface signals from a 61-channel micro-electrocorticographic (μECoG) array. Approach We recorded both acute and chronic μECoG signal from rat auditory cortex using our novel digital current-sensing headstage. For direct comparison, separate recordings were made in the same anesthetized preparations using an analog voltage headstage. A model of electrode impedance explained the transformation between current- and voltage-sensed signals, and was used to reconstruct cortical potential. We evaluated the digital headstage using several metrics of the baseline and response signals. Main results The digital current headstage recorded neural signal with similar spatiotemporal statistics and auditory frequency tuning compared to the voltage signal. The signal-to-noise ratio of auditory evoked responses (AERs) was significantly stronger in the current signal. Stimulus decoding based on true and reconstructed voltage signals were not significantly different. Recordings from an implanted system showed AERs that were detectable and decodable for 52 days. The reconstruction filter mitigated the thermal current noise of the electrode impedance and enhanced overall SNR. Significance We developed and validated a novel approach to headstage acquisition that used current-input circuits to independently digitize 61 channels of μECoG measurements of the cortical field. These low-cost circuits, intended to measure photo-currents in digital imaging, not only provided a signal representing the local cortical field with virtually the same sensitivity and specificity as a traditional voltage headstage but also resulted in a small, light headstage that can easily be scaled to record from hundreds of channels. PMID:28102827

Paleo ice-cap surfaces and extents

NASA Astrophysics Data System (ADS)

Gillespie, A.; Pieri, D.

2008-12-01

The distribution, equilibrium-line altitude (ELA) and timing of Pleistocene alpine glaciers are used to constrain paleoclimatic reconstructions. Attention has largely focused on the geomorphic evidence for the former presence of simple valley glaciers; paleo alpine ice caps and their outlet glaciers have proven to be more problematical. This is especially so in the remote continental interior of Asia, where the research invested in the Alps or Rocky Mountains has yet to be duplicated. Even the putative existence and size of paleo ice caps in Tibet and the Kyrgyz Tien Shan is controversial. Remote sensing offers the opportunity to assess vast tracts of land quickly, with images and co-registered digital elevation models (DEMs) offering the most information for studies of paleoglaciers. We pose several questions: (1) With what confidence can nunataks be identified remotely? (2) What insights do their physiographic characteristics offer? (3) What characteristics of the bed of a paleo ice cap can be used to identify its former presence remotely? and (4) Can the geomorphic signatures of the edges of paleo ice caps be recognized and mapped? Reconstruction of the top surface of a paleo ice cap depends on the recognition of nunataks, typically rougher at 1 m to 100 m scales than their surroundings. Nunataks in southern Siberia are commonly notched by multiple sub- horizontal bedrock terraces. These step terraces appear to originate from freeze-thaw action on the rock-ice interface during periods of stability, and presence of multiple terraces suggests stepwise lowering of ice surfaces during deglaciation. An older generation of step-terraced nunataks, distinguished by degraded and eroded terraces, delineates a larger paleo ice cap in the Sayan Range (Siberian - Mongolian border) that significantly pre-dates the last glacial maximum (LGM). Large ice caps can experience pressure melting at their base and can manifest ice streams within the ice cap. Valleys left behind differ from fluvial valleys in their width/depth profiles: the channels maintain width but get shallower near their sources. Link junction angle distributions within superimposed drainage networks are broader and distinct from those of evolved fluvial networks, and their character and statistics can be used to identify the perimeters of large paleo ice caps. (This work was carried out in part at the Jet Propulsion Laboratory of the California Institute of Technology under contract to NASA.)

Reconstruction of global gridded monthly sectoral water withdrawals for 1971-2010 and analysis of their spatiotemporal patterns

NASA Astrophysics Data System (ADS)

Huang, Zhongwei; Hejazi, Mohamad; Li, Xinya; Tang, Qiuhong; Vernon, Chris; Leng, Guoyong; Liu, Yaling; Döll, Petra; Eisner, Stephanie; Gerten, Dieter; Hanasaki, Naota; Wada, Yoshihide

2018-04-01

Human water withdrawal has increasingly altered the global water cycle in past decades, yet our understanding of its driving forces and patterns is limited. Reported historical estimates of sectoral water withdrawals are often sparse and incomplete, mainly restricted to water withdrawal estimates available at annual and country scales, due to a lack of observations at seasonal and local scales. In this study, through collecting and consolidating various sources of reported data and developing spatial and temporal statistical downscaling algorithms, we reconstruct a global monthly gridded (0.5°) sectoral water withdrawal dataset for the period 1971-2010, which distinguishes six water use sectors, i.e., irrigation, domestic, electricity generation (cooling of thermal power plants), livestock, mining, and manufacturing. Based on the reconstructed dataset, the spatial and temporal patterns of historical water withdrawal are analyzed. Results show that total global water withdrawal has increased significantly during 1971-2010, mainly driven by the increase in irrigation water withdrawal. Regions with high water withdrawal are those densely populated or with large irrigated cropland production, e.g., the United States (US), eastern China, India, and Europe. Seasonally, irrigation water withdrawal in summer for the major crops contributes a large percentage of total annual irrigation water withdrawal in mid- and high-latitude regions, and the dominant season of irrigation water withdrawal is also different across regions. Domestic water withdrawal is mostly characterized by a summer peak, while water withdrawal for electricity generation has a winter peak in high-latitude regions and a summer peak in low-latitude regions. Despite the overall increasing trend, irrigation in the western US and domestic water withdrawal in western Europe exhibit a decreasing trend. Our results highlight the distinct spatial pattern of human water use by sectors at the seasonal and annual timescales. The reconstructed gridded water withdrawal dataset is open access, and can be used for examining issues related to water withdrawals at fine spatial, temporal, and sectoral scales.

Structural profile reconstructions and thermal metamorphic evolution in the slate belt of southern Hsuehshan Range in the active Taiwan mountain belt

NASA Astrophysics Data System (ADS)

Wu, Yu; Chen, Chih-Tung; Lee, Jian-Cheng; Shyu, J. Bruce H.

2017-04-01

The fate of passive continental margin in collisional orogens is crucial in understanding tectonic evolution of mountain belts. The active arc-continent collision of Taiwan is considered as a model case in studying mountain building processes, and largely consists of deformed margin basement and cover series. Among the whole orogeny belt, the slate belt of the Hsuehshan Range (HR) is a prominent large-scale pop-up structural on the prowedge part of the orogen, and is composed of metamorphosed Eocene to Miocene sediments which experienced only the Neogene Taiwan orogeny after diagenesis in margin graben. Characterizing the metamorphic history of the HR is essential for reconstructing its geological evolution during the mountain building processes. However, previous studies were mostly focused on northern and central HR, structural investigation coupled with metamorphic documentation in the southern part of HR, which is the most active part of the orogeny belt, is therefore targeted in this work. Since carbonaceous material is common in pelitic protolith of HR slates, the Raman spectrum of carbonaceous material (RSCM) measuring the rock peak temperature is chosen for quantitative thermal metamorphic documentation. In this study, we reconstruct a geological structural profile in western central Taiwan across the prowedge part of the mountain belt containing the southern HR by combining the surface geological data, well log records and published seismic reflection profiles. Although most of the existing data are concentrated in the fold-and-thrust belt, they are now reinforced by new field structural measurements and RSCM samples in the southern HR. In total 27 RSCM samples were collected along 2 transects perpendicular to the average strike with a dense interval about 2 km. The results allow us to map peak temperature distribution across southern HR, and provide new constraints for structural profile reconstruction and reappraisal of the structural evolution of the HR and neighboring fold-and-thrust belt. As shown in the previous thermal metamorphic investigation, we expected that southern HR strata acquired highest temperature during its burial stage than the orogenic stage like their central HR counterparts, thus experiencing mostly retrograde metamorphism in the entire mountain building processes.

Concepts and Plans towards fast large scale Monte Carlo production for the ATLAS Experiment

NASA Astrophysics Data System (ADS)

Ritsch, E.; Atlas Collaboration

2014-06-01

The huge success of the physics program of the ATLAS experiment at the Large Hadron Collider (LHC) during Run 1 relies upon a great number of simulated Monte Carlo events. This Monte Carlo production takes the biggest part of the computing resources being in use by ATLAS as of now. In this document we describe the plans to overcome the computing resource limitations for large scale Monte Carlo production in the ATLAS Experiment for Run 2, and beyond. A number of fast detector simulation, digitization and reconstruction techniques are being discussed, based upon a new flexible detector simulation framework. To optimally benefit from these developments, a redesigned ATLAS MC production chain is presented at the end of this document.

The plume head-continental lithosphere interaction using a tectonically realistic formulation for the lithosphere

NASA Astrophysics Data System (ADS)

Burov, E.; Guillou-Frottier, L.

2005-05-01

Current debates on the existence of mantle plumes largely originate from interpretations of supposed signatures of plume-induced surface topography that are compared with predictions of geodynamic models of plume-lithosphere interactions. These models often inaccurately predict surface evolution: in general, they assume a fixed upper surface and consider the lithosphere as a single viscous layer. In nature, the surface evolution is affected by the elastic-brittle-ductile deformation, by a free upper surface and by the layered structure of the lithosphere. We make a step towards reconciling mantle- and tectonic-scale studies by introducing a tectonically realistic continental plate model in large-scale plume-lithosphere interaction. This model includes (i) a natural free surface boundary condition, (ii) an explicit elastic-viscous(ductile)-plastic(brittle) rheology and (iii) a stratified structure of continental lithosphere. The numerical experiments demonstrate a number of important differences from predictions of conventional models. In particular, this relates to plate bending, mechanical decoupling of crustal and mantle layers and tension-compression instabilities, which produce transient topographic signatures such as uplift and subsidence at large (>500 km) and small scale (300-400, 200-300 and 50-100 km). The mantle plumes do not necessarily produce detectable large-scale topographic highs but often generate only alternating small-scale surface features that could otherwise be attributed to regional tectonics. A single large-wavelength deformation, predicted by conventional models, develops only for a very cold and thick lithosphere. Distinct topographic wavelengths or temporarily spaced events observed in the East African rift system, as well as over French Massif Central, can be explained by a single plume impinging at the base of the continental lithosphere, without evoking complex asthenospheric upwelling.

Dewetting and Hydrophobic Interaction in Physical and Biological Systems

PubMed Central

Berne, Bruce J.; Weeks, John D.; Zhou, Ruhong

2013-01-01

Hydrophobicity manifests itself differently on large and small length scales. This review focuses on large length scale hydrophobicity, particularly on dewetting at single hydrophobic surfaces and drying in regions bounded on two or more sides by hydrophobic surfaces. We review applicable theories, simulations and experiments pertaining to large scale hydrophobicity in physical and biomoleclar systems and clarify some of the critical issues pertaining to this subject. Given space constraints, we could not review all of the significant and interesting work in this very active field. PMID:18928403

Impact of Data Placement on Resilience in Large-Scale Object Storage Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carns, Philip; Harms, Kevin; Jenkins, John

Distributed object storage architectures have become the de facto standard for high-performance storage in big data, cloud, and HPC computing. Object storage deployments using commodity hardware to reduce costs often employ object replication as a method to achieve data resilience. Repairing object replicas after failure is a daunting task for systems with thousands of servers and billions of objects, however, and it is increasingly difficult to evaluate such scenarios at scale on realworld systems. Resilience and availability are both compromised if objects are not repaired in a timely manner. In this work we leverage a high-fidelity discrete-event simulation model tomore » investigate replica reconstruction on large-scale object storage systems with thousands of servers, billions of objects, and petabytes of data. We evaluate the behavior of CRUSH, a well-known object placement algorithm, and identify configuration scenarios in which aggregate rebuild performance is constrained by object placement policies. After determining the root cause of this bottleneck, we then propose enhancements to CRUSH and the usage policies atop it to enable scalable replica reconstruction. We use these methods to demonstrate a simulated aggregate rebuild rate of 410 GiB/s (within 5% of projected ideal linear scaling) on a 1,024-node commodity storage system. We also uncover an unexpected phenomenon in rebuild performance based on the characteristics of the data stored on the system.« less

Evaluation of deconvolution modelling applied to numerical combustion

NASA Astrophysics Data System (ADS)

Mehl, Cédric; Idier, Jérôme; Fiorina, Benoît

2018-01-01

A possible modelling approach in the large eddy simulation (LES) of reactive flows is to deconvolve resolved scalars. Indeed, by inverting the LES filter, scalars such as mass fractions are reconstructed. This information can be used to close budget terms of filtered species balance equations, such as the filtered reaction rate. Being ill-posed in the mathematical sense, the problem is very sensitive to any numerical perturbation. The objective of the present study is to assess the ability of this kind of methodology to capture the chemical structure of premixed flames. For that purpose, three deconvolution methods are tested on a one-dimensional filtered laminar premixed flame configuration: the approximate deconvolution method based on Van Cittert iterative deconvolution, a Taylor decomposition-based method, and the regularised deconvolution method based on the minimisation of a quadratic criterion. These methods are then extended to the reconstruction of subgrid scale profiles. Two methodologies are proposed: the first one relies on subgrid scale interpolation of deconvolved profiles and the second uses parametric functions to describe small scales. Conducted tests analyse the ability of the method to capture the chemical filtered flame structure and front propagation speed. Results show that the deconvolution model should include information about small scales in order to regularise the filter inversion. a priori and a posteriori tests showed that the filtered flame propagation speed and structure cannot be captured if the filter size is too large.

Implications of dune pattern analysis for Titan's surface history

NASA Astrophysics Data System (ADS)

Savage, Christopher J.; Radebaugh, Jani; Christiansen, Eric H.; Lorenz, Ralph D.

2014-02-01

Analysis of large-scale morphological parameters can reveal the reaction of dunes to changes in atmospheric and sedimentary conditions. Over 7000 dune width and 7000 dune spacing measurements were obtained for linear dunes in regions across Saturn's moon Titan from images T21, T23, T28, T44 and T48 collected by the Synthetic Aperture RADAR (SAR) aboard the Cassini spacecraft in order to reconstruct the aeolian surface history of Titan. Dunes in the five study areas are all linear in form, with a mean width of 1.3 km and mean crest spacing of 2.7 km, similar to dunes in the African Saharan and Namib deserts on Earth. At the resolution of Cassini SAR, the dunes have the morphology of large linear dunes, and they lack evidence for features of compound or complex dunes. The large size, spacing and uniform morphology are all indicators that Titan's dunes are mature features, in that they have grown toward a steady state for a long period of time. Dune width decreases to the north, perhaps from increased sediment stabilization caused by a net transport of moisture from south to north, or from increased maturity in dunes to the south. Cumulative probability plots of dune parameters measured at different locations across Titan indicate there is a single population of intermediate-to-large-sized dunes on Titan. This suggests that, unlike analogous dunes in the Namib and Agneitir Sand Seas, dune-forming conditions that generated the current set of dunes were stable and active long enough to erase any evidence of past conditions.

Automated Recovery of Three-Dimensional Models of Plant Shoots from Multiple Color Images1[C][W][OPEN

PubMed Central

Pound, Michael P.; French, Andrew P.; Murchie, Erik H.; Pridmore, Tony P.

2014-01-01

Increased adoption of the systems approach to biological research has focused attention on the use of quantitative models of biological objects. This includes a need for realistic three-dimensional (3D) representations of plant shoots for quantification and modeling. Previous limitations in single-view or multiple-view stereo algorithms have led to a reliance on volumetric methods or expensive hardware to record plant structure. We present a fully automatic approach to image-based 3D plant reconstruction that can be achieved using a single low-cost camera. The reconstructed plants are represented as a series of small planar sections that together model the more complex architecture of the leaf surfaces. The boundary of each leaf patch is refined using the level-set method, optimizing the model based on image information, curvature constraints, and the position of neighboring surfaces. The reconstruction process makes few assumptions about the nature of the plant material being reconstructed and, as such, is applicable to a wide variety of plant species and topologies and can be extended to canopy-scale imaging. We demonstrate the effectiveness of our approach on data sets of wheat (Triticum aestivum) and rice (Oryza sativa) plants as well as a unique virtual data set that allows us to compute quantitative measures of reconstruction accuracy. The output is a 3D mesh structure that is suitable for modeling applications in a format that can be imported in the majority of 3D graphics and software packages. PMID:25332504

Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency.

PubMed

Weber, Thomas; Cram, Jacob A; Leung, Shirley W; DeVries, Timothy; Deutsch, Curtis

2016-08-02

The "transfer efficiency" of sinking organic particles through the mesopelagic zone and into the deep ocean is a critical determinant of the atmosphere-ocean partition of carbon dioxide (CO2). Our ability to detect large-scale spatial variations in transfer efficiency is limited by the scarcity and uncertainties of particle flux data. Here we reconstruct deep ocean particle fluxes by diagnosing the rate of nutrient accumulation along transport pathways in a data-constrained ocean circulation model. Combined with estimates of organic matter export from the surface, these diagnosed fluxes reveal a global pattern of transfer efficiency to 1,000 m that is high (∼25%) at high latitudes and low (∼5%) in subtropical gyres, with intermediate values in the tropics. This pattern is well correlated with spatial variations in phytoplankton community structure and the export of ballast minerals, which control the size and density of sinking particles. These findings accentuate the importance of high-latitude oceans in sequestering carbon over long timescales, and highlight potential impacts on remineralization depth as phytoplankton communities respond to a warming climate.

Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency

PubMed Central

Weber, Thomas; Cram, Jacob A.; Leung, Shirley W.; DeVries, Timothy; Deutsch, Curtis

2016-01-01

The “transfer efficiency” of sinking organic particles through the mesopelagic zone and into the deep ocean is a critical determinant of the atmosphere−ocean partition of carbon dioxide (CO2). Our ability to detect large-scale spatial variations in transfer efficiency is limited by the scarcity and uncertainties of particle flux data. Here we reconstruct deep ocean particle fluxes by diagnosing the rate of nutrient accumulation along transport pathways in a data-constrained ocean circulation model. Combined with estimates of organic matter export from the surface, these diagnosed fluxes reveal a global pattern of transfer efficiency to 1,000 m that is high (∼25%) at high latitudes and low (∼5%) in subtropical gyres, with intermediate values in the tropics. This pattern is well correlated with spatial variations in phytoplankton community structure and the export of ballast minerals, which control the size and density of sinking particles. These findings accentuate the importance of high-latitude oceans in sequestering carbon over long timescales, and highlight potential impacts on remineralization depth as phytoplankton communities respond to a warming climate. PMID:27457946

Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency

NASA Astrophysics Data System (ADS)

Weber, Thomas; Cram, Jacob A.; Leung, Shirley W.; DeVries, Timothy; Deutsch, Curtis

2016-08-01

The “transfer efficiency” of sinking organic particles through the mesopelagic zone and into the deep ocean is a critical determinant of the atmosphere-ocean partition of carbon dioxide (CO2). Our ability to detect large-scale spatial variations in transfer efficiency is limited by the scarcity and uncertainties of particle flux data. Here we reconstruct deep ocean particle fluxes by diagnosing the rate of nutrient accumulation along transport pathways in a data-constrained ocean circulation model. Combined with estimates of organic matter export from the surface, these diagnosed fluxes reveal a global pattern of transfer efficiency to 1,000 m that is high (˜25%) at high latitudes and low (˜5%) in subtropical gyres, with intermediate values in the tropics. This pattern is well correlated with spatial variations in phytoplankton community structure and the export of ballast minerals, which control the size and density of sinking particles. These findings accentuate the importance of high-latitude oceans in sequestering carbon over long timescales, and highlight potential impacts on remineralization depth as phytoplankton communities respond to a warming climate.

Method of producing nanopatterned articles, and articles produced thereby

DOEpatents

Russell, Thomas P; Park, Soojin; Xu, Ting

2013-11-12

A nanopatterned surface is prepared by forming a block copolymer film on a miscut crystalline substrate, annealing the block copolymer film, then reconstructing the surface of the annealed block copolymer film. The method creates a well-ordered array of voids in the block copolymer film that is maintained over a large area. The nanopatterned block copolymer films can be used ina variety of different applications, including the fabrication of high density data storage media.

Atlantic Ocean Circulation and Climate: The Current View From the Geological Record

NASA Astrophysics Data System (ADS)

Curry, W.

2006-12-01

Several recent advances in our understanding of past ocean circulation come from geological reconstructions using deep sea sediment proxies of water mass structure and flow. Put together, the observations suggest that the Atlantic Ocean during the last glacial period (21,000 years ago) was very different from today. Geochemical tracers document a shoaling of North Atlantic Deep Water and a much greater volume of deep waters with an Antarctic origin. Sedimentary pore water profiles have detected a reversal in the salinity gradient between northern and southern deep water sources. Uranium-series decay products in North Atlantic sediments indicate that the southward transport of North Atlantic Deep Water was as much as 30-40% reduced from today's transport. Ocean-margin density reconstructions are consistent with a one third reduction in transport through the Florida Straits. A reversed cross-basin density gradient in the South Atlantic calls for a different intermediate water circulation in the South Atlantic. The glacial Atlantic circulation appears to be best explained by a reduced influence of North Atlantic deep water sources and much greater influence of Antarctic deep water sources. More recent changes in Atlantic circulation have been much more modest. During the Little Ice Age (LIA - a much smaller cooling event about 200 to 600 years ago), transport of the Florida Current was reduced by about 10%, significant but a much smaller reduction than observed during the glacial period. There is little evidence for a change in the distribution or geochemistry of the water masses during the LIA. For both climate events (the glacial and the LIA) reduced Florida Current transport was accompanied by increased salinity of its surface waters, linking changes in ocean circulation to large scale changes in surface water hydrology. A feedback between the circulation of the Atlantic Ocean and the climate of the tropics has been proposed before and also seen in some coupled climate models: variations in the temperature gradients in the Atlantic basin affect the position of the Intertropical Convergence Zone and alter evaporation and precipitation patterns in the tropics. The salinity anomalies caused by these atmospheric shifts eventually are transported back to high latitudes by ocean circulation (Vellinga and Wu, 2004). Several recent geological reconstructions appear to observe such a coupling on centennial and millennial time scales.

Direct phase measurement in zonal wavefront reconstruction using multidither coherent optical adaptive technique.

PubMed

Liu, Rui; Milkie, Daniel E; Kerlin, Aaron; MacLennan, Bryan; Ji, Na

2014-01-27

In traditional zonal wavefront sensing for adaptive optics, after local wavefront gradients are obtained, the entire wavefront can be calculated by assuming that the wavefront is a continuous surface. Such an approach will lead to sub-optimal performance in reconstructing wavefronts which are either discontinuous or undersampled by the zonal wavefront sensor. Here, we report a new method to reconstruct the wavefront by directly measuring local wavefront phases in parallel using multidither coherent optical adaptive technique. This method determines the relative phases of each pupil segment independently, and thus produces an accurate wavefront for even discontinuous wavefronts. We implemented this method in an adaptive optical two-photon fluorescence microscopy and demonstrated its superior performance in correcting large or discontinuous aberrations.

Creation of a Digital Surface Model and Extraction of Coarse Woody Debris from Terrestrial Laser Scans in an Open Eucalypt Woodland

NASA Astrophysics Data System (ADS)

Muir, J.; Phinn, S. R.; Armston, J.; Scarth, P.; Eyre, T.

2014-12-01

Coarse woody debris (CWD) provides important habitat for many species and plays a vital role in nutrient cycling within an ecosystem. In addition, CWD makes an important contribution to forest biomass and fuel loads. Airborne or space based remote sensing instruments typically do not detect CWD beneath the forest canopy. Terrestrial laser scanning (TLS) provides a ground based method for three-dimensional (3-D) reconstruction of surface features and CWD. This research produced a 3-D reconstruction of the ground surface and automatically classified coarse woody debris from registered TLS scans. The outputs will be used to inform the development of a site-based index for the assessment of forest condition, and quantitative assessments of biomass and fuel loads. A survey grade terrestrial laser scanner (Riegl VZ400) was used to scan 13 positions, in an open eucalypt woodland site at Karawatha Forest Park, near Brisbane, Australia. Scans were registered, and a digital surface model (DSM) produced using an intensity threshold and an iterative morphological filter. The DSMs produced from single scans were compared to the registered multi-scan point cloud using standard error metrics including: Root Mean Squared Error (RMSE), Mean Squared Error (MSE), range, absolute error and signed error. In addition the DSM was compared to a Digital Elevation Model (DEM) produced from Airborne Laser Scanning (ALS). Coarse woody debris was subsequently classified from the DSM using laser pulse properties, including: width and amplitude, as well as point spatial relationships (e.g. nearest neighbour slope vectors). Validation of the coarse woody debris classification was completed using true-colour photographs co-registered to the TLS point cloud. The volume and length of the coarse woody debris was calculated from the classified point cloud. A representative network of TLS sites will allow for up-scaling to large area assessment using airborne or space based sensors to monitor forest condition, biomass and fuel loads.

CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data.

PubMed

Zheng, Guangyong; Xu, Yaochen; Zhang, Xiujun; Liu, Zhi-Ping; Wang, Zhuo; Chen, Luonan; Zhu, Xin-Guang

2016-12-23

A gene regulatory network (GRN) represents interactions of genes inside a cell or tissue, in which vertexes and edges stand for genes and their regulatory interactions respectively. Reconstruction of gene regulatory networks, in particular, genome-scale networks, is essential for comparative exploration of different species and mechanistic investigation of biological processes. Currently, most of network inference methods are computationally intensive, which are usually effective for small-scale tasks (e.g., networks with a few hundred genes), but are difficult to construct GRNs at genome-scale. Here, we present a software package for gene regulatory network reconstruction at a genomic level, in which gene interaction is measured by the conditional mutual information measurement using a parallel computing framework (so the package is named CMIP). The package is a greatly improved implementation of our previous PCA-CMI algorithm. In CMIP, we provide not only an automatic threshold determination method but also an effective parallel computing framework for network inference. Performance tests on benchmark datasets show that the accuracy of CMIP is comparable to most current network inference methods. Moreover, running tests on synthetic datasets demonstrate that CMIP can handle large datasets especially genome-wide datasets within an acceptable time period. In addition, successful application on a real genomic dataset confirms its practical applicability of the package. This new software package provides a powerful tool for genomic network reconstruction to biological community. The software can be accessed at http://www.picb.ac.cn/CMIP/ .

Reconstructing the vibro-acoustic quantities on a highly non-spherical surface using the Helmholtz equation least squares method.

PubMed

Natarajan, Logesh Kumar; Wu, Sean F

2012-06-01

This paper presents helpful guidelines and strategies for reconstructing the vibro-acoustic quantities on a highly non-spherical surface by using the Helmholtz equation least squares (HELS). This study highlights that a computationally simple code based on the spherical wave functions can produce an accurate reconstruction of the acoustic pressure and normal surface velocity on planar surfaces. The key is to select the optimal origin of the coordinate system behind the planar surface, choose a target structural wavelength to be reconstructed, set an appropriate stand-off distance and microphone spacing, use a hybrid regularization scheme to determine the optimal number of the expansion functions, etc. The reconstructed vibro-acoustic quantities are validated rigorously via experiments by comparing the reconstructed normal surface velocity spectra and distributions with the benchmark data obtained by scanning a laser vibrometer over the plate surface. Results confirm that following the proposed guidelines and strategies can ensure the accuracy in reconstructing the normal surface velocity up to the target structural wavelength, and produce much more satisfactory results than a straight application of the original HELS formulations. Experiment validations on a baffled, square plate were conducted inside a fully anechoic chamber.

Optimal Compressed Sensing and Reconstruction of Unstructured Mesh Datasets

DOE PAGES

Salloum, Maher; Fabian, Nathan D.; Hensinger, David M.; ...

2017-08-09

Exascale computing promises quantities of data too large to efficiently store and transfer across networks in order to be able to analyze and visualize the results. We investigate compressed sensing (CS) as an in situ method to reduce the size of the data as it is being generated during a large-scale simulation. CS works by sampling the data on the computational cluster within an alternative function space such as wavelet bases and then reconstructing back to the original space on visualization platforms. While much work has gone into exploring CS on structured datasets, such as image data, we investigate itsmore » usefulness for point clouds such as unstructured mesh datasets often found in finite element simulations. We sample using a technique that exhibits low coherence with tree wavelets found to be suitable for point clouds. We reconstruct using the stagewise orthogonal matching pursuit algorithm that we improved to facilitate automated use in batch jobs. We analyze the achievable compression ratios and the quality and accuracy of reconstructed results at each compression ratio. In the considered case studies, we are able to achieve compression ratios up to two orders of magnitude with reasonable reconstruction accuracy and minimal visual deterioration in the data. Finally, our results suggest that, compared to other compression techniques, CS is attractive in cases where the compression overhead has to be minimized and where the reconstruction cost is not a significant concern.« less

Extended-range high-resolution dynamical downscaling over a continental-scale spatial domain with atmospheric and surface nudging

NASA Astrophysics Data System (ADS)

Husain, S. Z.; Separovic, L.; Yu, W.; Fernig, D.

2014-12-01

Extended-range high-resolution mesoscale simulations with limited-area atmospheric models when applied to downscale regional analysis fields over large spatial domains can provide valuable information for many applications including the weather-dependent renewable energy industry. Long-term simulations over a continental-scale spatial domain, however, require mechanisms to control the large-scale deviations in the high-resolution simulated fields from the coarse-resolution driving fields. As enforcement of the lateral boundary conditions is insufficient to restrict such deviations, large scales in the simulated high-resolution meteorological fields are therefore spectrally nudged toward the driving fields. Different spectral nudging approaches, including the appropriate nudging length scales as well as the vertical profiles and temporal relaxations for nudging, have been investigated to propose an optimal nudging strategy. Impacts of time-varying nudging and generation of hourly analysis estimates are explored to circumvent problems arising from the coarse temporal resolution of the regional analysis fields. Although controlling the evolution of the atmospheric large scales generally improves the outputs of high-resolution mesoscale simulations within the surface layer, the prognostically evolving surface fields can nevertheless deviate from their expected values leading to significant inaccuracies in the predicted surface layer meteorology. A forcing strategy based on grid nudging of the different surface fields, including surface temperature, soil moisture, and snow conditions, toward their expected values obtained from a high-resolution offline surface scheme is therefore proposed to limit any considerable deviation. Finally, wind speed and temperature at wind turbine hub height predicted by different spectrally nudged extended-range simulations are compared against observations to demonstrate possible improvements achievable using higher spatiotemporal resolution.

Progressive Mid-latitude Afforestation: Local and Remote Climate Impacts in the Framework of Two Coupled Earth System Models

NASA Astrophysics Data System (ADS)

Lague, Marysa

Vegetation influences the atmosphere in complex and non-linear ways, such that large-scale changes in vegetation cover can drive changes in climate on both local and global scales. Large-scale land surface changes have been shown to introduce excess energy to one hemisphere, causing a shift in atmospheric circulation on a global scale. However, past work has not quantified how the climate response scales with the area of vegetation. Here, we systematically evaluate the response of climate to linearly increasing the area of forest cover over the northern mid-latitudes. We show that the magnitude of afforestation of the northern mid-latitudes determines the climate response in a non-linear fashion, and identify a threshold in vegetation-induced cloud feedbacks - a concept not previously addressed by large-scale vegetation manipulation experiments. Small increases in tree cover drive compensating cloud feedbacks, while latent heat fluxes reach a threshold after sufficiently large increases in tree cover, causing the troposphere to warm and dry, subsequently reducing cloud cover. Increased absorption of solar radiation at the surface is driven by both surface albedo changes and cloud feedbacks. We identify how vegetation-induced changes in cloud cover further feedback on changes in the global energy balance. We also show how atmospheric cross-equatorial energy transport changes as the area of afforestation is incrementally increased (a relationship which has not previously been demonstrated). This work demonstrates that while some climate effects (such as energy transport) of large scale mid-latitude afforestation scale roughly linearly across a wide range of afforestation areas, others (such as the local partitioning of the surface energy budget) are non-linear, and sensitive to the particular magnitude of mid-latitude forcing. Our results highlight the importance of considering both local and remote climate responses to large-scale vegetation change, and explore the scaling relationship between changes in vegetation cover and the resulting climate impacts.

Multibody correlations in the hydrophobic solvation of glycine peptides

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, Robert C.; Drake, Justin A.; Pettitt, B. Montgomery, E-mail: mpettitt@utmb.edu

2014-12-14

Protein collapse during folding is often assumed to be driven by a hydrophobic solvation energy (ΔG{sub vdw}) that scales linearly with solvent-accessible surface area (A). In a previous study, we argued that ΔG{sub vdw}, as well as its attractive (ΔG{sub att}) and repulsive (ΔG{sub rep}) components, was not simply a linear function of A. We found that the surface tensions, γ{sub rep}, γ{sub att}, and γ{sub vdw}, gotten from ΔG{sub rep}, ΔG{sub att}, and ΔG{sub vdw} against A for four configurations of deca-alanine differed from those obtained for a set of alkanes. In the present study, we extend our analysismore » to fifty decaglycine structures and atomic decompositions. We find that different configurations of decaglycine generate different estimates of γ{sub rep}. Additionally, we considered the reconstruction of the solvation free energy from scaling the free energy of solvation of each atom type, free in solution. The free energy of the isolated atoms, scaled by the inverse surface area the atom would expose in the molecule does not reproduce the γ{sub rep} for the intact decaglycines. Finally, γ{sub att} for the decaglycine conformations is much larger in magnitude than those for deca-alanine or the alkanes, leading to large negative values of γ{sub vdw} (−74 and −56 cal/mol/Å{sup 2} for CHARMM27 and AMBER ff12sb force fields, respectively). These findings imply that ΔG{sub vdw} favors extended rather than compact structures for decaglycine. We find that ΔG{sub rep} and ΔG{sub vdw} have complicated dependencies on multibody correlations between solute atoms, on the geometry of the molecular surface, and on the chemical identities of the atoms.« less

Demand surge following earthquakes

USGS Publications Warehouse

Olsen, Anna H.

2012-01-01

Demand surge is understood to be a socio-economic phenomenon where repair costs for the same damage are higher after large- versus small-scale natural disasters. It has reportedly increased monetary losses by 20 to 50%. In previous work, a model for the increased costs of reconstruction labor and materials was developed for hurricanes in the Southeast United States. The model showed that labor cost increases, rather than the material component, drove the total repair cost increases, and this finding could be extended to earthquakes. A study of past large-scale disasters suggested that there may be additional explanations for demand surge. Two such explanations specific to earthquakes are the exclusion of insurance coverage for earthquake damage and possible concurrent causation of damage from an earthquake followed by fire or tsunami. Additional research into these aspects might provide a better explanation for increased monetary losses after large- vs. small-scale earthquakes.

Rainfall seasonality on the Indian subcontinent during the Cretaceous greenhouse.

PubMed

Ghosh, Prosenjit; Prasanna, K; Banerjee, Yogaraj; Williams, Ian S; Gagan, Michael K; Chaudhuri, Atanu; Suwas, Satyam

2018-05-31

The Cretaceous greenhouse climate was accompanied by major changes in Earth's hydrological cycle, but seasonally resolved hydroclimatic reconstructions for this anomalously warm period are rare. We measured the δ 18 O and CO 2 clumped isotope Δ 47 of the seasonal growth bands in carbonate shells of the mollusc Villorita cyprinoides (Black Clam) growing in the Cochin estuary, in southern India. These tandem records accurately reconstruct seasonal changes in sea surface temperature (SST) and seawater δ 18 O, allowing us to document freshwater discharge into the estuary, and make inferences about rainfall amount. The same analytical approach was applied to well-preserved fossil remains of the Cretaceous (Early Maastrichtian) mollusc Phygraea (Phygraea) vesicularis from the nearby Kallankuruchchi Formation in the Cauvery Basin of southern India. The palaeoenvironmental record shows that, unlike present-day India, where summer rainfall predominates, most rainfall in Cretaceous India occurred in winter. During the Early Maastrichtian, the Indian plate was positioned at ~30°S latitude, where present-day rainfall and storm activity is also concentrated in winter. The good match of the Cretaceous climate and present-day climate at ~30°S suggests that the large-scale atmospheric circulation and seasonal hydroclimate patterns were similar to, although probably more intense than, those at present.

Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters

NASA Astrophysics Data System (ADS)

Cao, Lu; Verbeek, Fons J.

2012-03-01

In computer graphics and visualization, reconstruction of a 3D surface from a point cloud is an important research area. As the surface contains information that can be measured, i.e. expressed in features, the application of surface reconstruction can be potentially important for application in bio-imaging. Opportunities in this application area are the motivation for this study. In the past decade, a number of algorithms for surface reconstruction have been proposed. Generally speaking, these methods can be separated into two categories: i.e., explicit representation and implicit approximation. Most of the aforementioned methods are firmly based in theory; however, so far, no analytical evaluation between these methods has been presented. The straightforward way of evaluation has been by convincing through visual inspection. Through evaluation we search for a method that can precisely preserve the surface characteristics and that is robust in the presence of noise. The outcome will be used to improve reliability in surface reconstruction of biological models. We, therefore, use an analytical approach by selecting features as surface descriptors and measure these features in varying conditions. We selected surface distance, surface area and surface curvature as three major features to compare quality of the surface created by the different algorithms. Our starting point has been ground truth values obtained from analytical shapes such as the sphere and the ellipsoid. In this paper we present four classical surface reconstruction methods from the two categories mentioned above, i.e. the Power Crust, the Robust Cocone, the Fourier-based method and the Poisson reconstruction method. The results obtained from our experiments indicate that Poisson reconstruction method performs the best in the presence of noise.

Reconstruction of regional mean temperature for East Asia since 1900s and its uncertainties

NASA Astrophysics Data System (ADS)

Hua, W.

2017-12-01

Regional average surface air temperature (SAT) is one of the key variables often used to investigate climate change. Unfortunately, because of the limited observations over East Asia, there were also some gaps in the observation data sampling for regional mean SAT analysis, which was important to estimate past climate change. In this study, the regional average temperature of East Asia since 1900s is calculated by the Empirical Orthogonal Function (EOF)-based optimal interpolation (OA) method with considering the data errors. The results show that our estimate is more precise and robust than the results from simple average, which provides a better way for past climate reconstruction. In addition to the reconstructed regional average SAT anomaly time series, we also estimated uncertainties of reconstruction. The root mean square error (RMSE) results show that the the error decreases with respect to time, and are not sufficiently large to alter the conclusions on the persist warming in East Asia during twenty-first century. Moreover, the test of influence of data error on reconstruction clearly shows the sensitivity of reconstruction to the size of the data error.

Multiple-digit resurfacing using a thin latissimus dorsi perforator flap.

PubMed

Kim, Sang Wha; Lee, Ho Jun; Kim, Jeong Tae; Kim, Youn Hwan

2014-01-01

Traumatic digit defects of high complexity and with inadequate local tissue represent challenging surgical problems. Recently, perforator flaps have been proposed for reconstructing large defects of the hand because of their thinness and pliability and minimal donor site morbidity. Here, we illustrate the use of thin latissimus dorsi perforator flaps for resurfacing multiple defects of distal digits. We describe the cases of seven patients with large defects, including digits, circumferential defects and multiple-digit defects, who underwent reconstruction with thin latissimus dorsi perforator flaps between January 2008 and March 2012. Single-digit resurfacing procedures were excluded. The mean age was 56.3 years and the mean flap size was 160.4 cm(2). All the flaps survived completely. Two patients had minor complications including partial flap loss and scar contracture. The mean follow-up period was 11.7 months. The ideal flap for digit resurfacing should be thin and amenable to moulding, have a long pedicle for microanastomosis and have minimal donor site morbidity. Thin flaps can be harvested by excluding the deep adipose layer, and their high pliability enables resurfacing without multiple debulking procedures. The latissimus dorsi perforator flap may be the best flap for reconstructing complex defects of the digits, such as large, multiple-digit or circumferential defects, which require complete wrapping of volar and dorsal surfaces. Copyright © 2013 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

The evolution of slip surface roughness during earthquake propagation in carbonate faults

NASA Astrophysics Data System (ADS)

Zhu, B.; De Paola, N.; Llewellin, E. W.; Holdsworth, R.

2014-12-01

Slip surface roughness is understood to control the dynamics of earthquake propagation. Quantifying the micro- and nano-scale roughness of slip surfaces can give insight into the grain-scale processes controlling the strength of faults during earthquake propagation. Friction experiments were performed on fine-grained calcite gouges, at speed 1 ms-1, normal stress 18 MPa, displacements 0.009-1.46 m, and room temperature and humidity. Results show a two stage-evolution (S1-2) of the fault strength, with an initial increase up to peak value 0.82 (S1), followed by a sudden decrease to a low, steady-state value 0.18 (S2). Samples retrieved at the end of S1 show the development of a cohesive slip zone (SZ), made of micron-scale, angular clasts formed by brittle fracturing and cataclasis. The SZ of samples deformed up to S2, is composed of nanograin aggregates which exhibit polygonal grain boundaries indicating high temperature grain boundary sliding creep deformation. In both cases, the SZ is bounded by a sharply defined slip surface. The 3-D geometry of seven experimental slip surfaces (40μm×40μm) has been reconstructed by digital processing of sets of 1800 images of SZ cross sections acquired at 20 nm intervals perpendicular to the slip direction, using a slicing (Focussed Ion Beam) and viewing (Field Emission Scanning Electron Microscope) technique. Spectrum power density analyses show that nano- and micron-scale slip surface roughness is anisotropic for both S1 and S2 slip surfaces. At the nano- and micron-scale, root mean square values decrease with length for S1 slip surfaces, but only slightly for S2 surfaces, and are anisotropic in the slip-normal and slip-parallel directions. The anisotropy is reduced at the nano-scale, although S2 slip surfaces are still smoother parallel to slip than normal to slip. Hurst exponents vary through scales, and are anisotropic in the directions parallel and normal to slip. Variable Hurst exponents indicate that slip surface roughness is scale-dependent with anisotropic, not self-affine behaviour at the micro/nano-scale, in contrast to the self-affine behaviour inferred at the mm to km scales. Dynamic weakening and creep deformation, observed during S2, coincide with an evolution towards less anisotropic and scale-dependent slip surface roughness at the nanoscale.

Large-scale photospheric motions determined from granule tracking and helioseismology from SDO/HMI data

NASA Astrophysics Data System (ADS)

Roudier, Th.; Švanda, M.; Ballot, J.; Malherbe, J. M.; Rieutord, M.

2018-04-01

Context. Large-scale flows in the Sun play an important role in the dynamo process linked to the solar cycle. The important large-scale flows are the differential rotation and the meridional circulation with an amplitude of km s-1 and few m s-1, respectively. These flows also have a cycle-related components, namely the torsional oscillations. Aim. Our attempt is to determine large-scale plasma flows on the solar surface by deriving horizontal flow velocities using the techniques of solar granule tracking, dopplergrams, and time-distance helioseismology. Methods: Coherent structure tracking (CST) and time-distance helioseismology were used to investigate the solar differential rotation and meridional circulation at the solar surface on a 30-day HMI/SDO sequence. The influence of a large sunspot on these large-scale flows with a specific 7-day HMI/SDO sequence has been also studied. Results: The large-scale flows measured by the CST on the solar surface and the same flow determined from the same data with the helioseismology in the first 1 Mm below the surface are in good agreement in amplitude and direction. The torsional waves are also located at the same latitudes with amplitude of the same order. We are able to measure the meridional circulation correctly using the CST method with only 3 days of data and after averaging between ± 15° in longitude. Conclusions: We conclude that the combination of CST and Doppler velocities allows us to detect properly the differential solar rotation and also smaller amplitude flows such as the meridional circulation and torsional waves. The results of our methods are in good agreement with helioseismic measurements.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Salloum, Maher; Fabian, Nathan D.; Hensinger, David M.

Exascale computing promises quantities of data too large to efficiently store and transfer across networks in order to be able to analyze and visualize the results. We investigate compressed sensing (CS) as an in situ method to reduce the size of the data as it is being generated during a large-scale simulation. CS works by sampling the data on the computational cluster within an alternative function space such as wavelet bases and then reconstructing back to the original space on visualization platforms. While much work has gone into exploring CS on structured datasets, such as image data, we investigate itsmore » usefulness for point clouds such as unstructured mesh datasets often found in finite element simulations. We sample using a technique that exhibits low coherence with tree wavelets found to be suitable for point clouds. We reconstruct using the stagewise orthogonal matching pursuit algorithm that we improved to facilitate automated use in batch jobs. We analyze the achievable compression ratios and the quality and accuracy of reconstructed results at each compression ratio. In the considered case studies, we are able to achieve compression ratios up to two orders of magnitude with reasonable reconstruction accuracy and minimal visual deterioration in the data. Finally, our results suggest that, compared to other compression techniques, CS is attractive in cases where the compression overhead has to be minimized and where the reconstruction cost is not a significant concern.« less

3D Reconstruction and Standardization of the Rat Vibrissal Cortex for Precise Registration of Single Neuron Morphology

PubMed Central

Egger, Robert; Narayanan, Rajeevan T.; Helmstaedter, Moritz; de Kock, Christiaan P. J.; Oberlaender, Marcel

2012-01-01

The three-dimensional (3D) structure of neural circuits is commonly studied by reconstructing individual or small groups of neurons in separate preparations. Investigation of structural organization principles or quantification of dendritic and axonal innervation thus requires integration of many reconstructed morphologies into a common reference frame. Here we present a standardized 3D model of the rat vibrissal cortex and introduce an automated registration tool that allows for precise placement of single neuron reconstructions. We (1) developed an automated image processing pipeline to reconstruct 3D anatomical landmarks, i.e., the barrels in Layer 4, the pia and white matter surfaces and the blood vessel pattern from high-resolution images, (2) quantified these landmarks in 12 different rats, (3) generated an average 3D model of the vibrissal cortex and (4) used rigid transformations and stepwise linear scaling to register 94 neuron morphologies, reconstructed from in vivo stainings, to the standardized cortex model. We find that anatomical landmarks vary substantially across the vibrissal cortex within an individual rat. In contrast, the 3D layout of the entire vibrissal cortex remains remarkably preserved across animals. This allows for precise registration of individual neuron reconstructions with approximately 30 µm accuracy. Our approach could be used to reconstruct and standardize other anatomically defined brain areas and may ultimately lead to a precise digital reference atlas of the rat brain. PMID:23284282

BICEP2/Keck Array VIII: Measurement of Gravitational Lensing from Large-scale B-mode Polarization

NASA Astrophysics Data System (ADS)

BICEP2 Collaboration; Keck Array Collaboration; Ade, P. A. R.; Ahmed, Z.; Aikin, R. W.; Alexander, K. D.; Barkats, D.; Benton, S. J.; Bischoff, C. A.; Bock, J. J.; Bowens-Rubin, R.; Brevik, J. A.; Buder, I.; Bullock, E.; Buza, V.; Connors, J.; Crill, B. P.; Duband, L.; Dvorkin, C.; Filippini, J. P.; Fliescher, S.; Grayson, J.; Halpern, M.; Harrison, S.; Hildebrandt, S. R.; Hilton, G. C.; Hui, H.; Irwin, K. D.; Kang, J.; Karkare, K. S.; Karpel, E.; Kaufman, J. P.; Keating, B. G.; Kefeli, S.; Kernasovskiy, S. A.; Kovac, J. M.; Kuo, C. L.; Leitch, E. M.; Lueker, M.; Megerian, K. G.; Namikawa, T.; Netterfield, C. B.; Nguyen, H. T.; O'Brient, R.; Ogburn, R. W., IV; Orlando, A.; Pryke, C.; Richter, S.; Schwarz, R.; Sheehy, C. D.; Staniszewski, Z. K.; Steinbach, B.; Sudiwala, R. V.; Teply, G. P.; Thompson, K. L.; Tolan, J. E.; Tucker, C.; Turner, A. D.; Vieregg, A. G.; Weber, A. C.; Wiebe, D. V.; Willmert, J.; Wong, C. L.; Wu, W. L. K.; Yoon, K. W.

2016-12-01

We present measurements of polarization lensing using the 150 GHz maps, which include all data taken by the BICEP2 and Keck Array Cosmic Microwave Background polarization experiments up to and including the 2014 observing season (BK14). Despite their modest angular resolution (˜ 0.5°), the excellent sensitivity (˜3μK-arcmin) of these maps makes it possible to directly reconstruct the lensing potential using only information at larger angular scales ({ℓ}≤700). From the auto-spectrum of the reconstructed potential, we measure an amplitude of the spectrum to be ALφ φ=1.15+/- 0.36 (Planck ΛCDM prediction corresponds to ALφ φ =1) and reject the no-lensing hypothesis at 5.8σ , which is the highest significance achieved to date using an EB lensing estimator. Taking the cross-spectrum of the reconstructed potential with the Planck 2015 lensing map yields ALφ φ =1.13+/- 0.20. These direct measurements of ALφ φ are consistent with the ΛCDM cosmology and with that derived from the previously reported BK14 B-mode auto-spectrum (AL{BB}=1.20+/- 0.17). We perform a series of null tests and consistency checks to show that these results are robust against systematics and are insensitive to analysis choices. These results unambiguously demonstrate that the B modes previously reported by BICEP/Keck at intermediate angular scales (150≲ ℓ ≲ 350) are dominated by gravitational lensing. The good agreement between the lensing amplitudes obtained from the lensing reconstruction and B-mode spectrum starts to place constraints on any alternative cosmological sources of B modes at these angular scales.

Simulation of Deep Convective Clouds with the Dynamic Reconstruction Turbulence Closure

NASA Astrophysics Data System (ADS)

Shi, X.; Chow, F. K.; Street, R. L.; Bryan, G. H.

2017-12-01

The terra incognita (TI), or gray zone, in simulations is a range of grid spacing comparable to the most energetic eddy diameter. Spacing in mesoscale and simulations is much larger than the eddies, and turbulence is parameterized with one-dimensional vertical-mixing. Large eddy simulations (LES) have grid spacing much smaller than the energetic eddies, and use three-dimensional models of turbulence. Studies of convective weather use convection-permitting resolutions, which are in the TI. Neither mesoscale-turbulence nor LES models are designed for the TI, so TI turbulence parameterization needs to be discussed. Here, the effects of sub-filter scale (SFS) closure schemes on the simulation of deep tropical convection are evaluated by comparing three closures, i.e. Smagorinsky model, Deardorff-type TKE model and the dynamic reconstruction model (DRM), which partitions SFS turbulence into resolvable sub-filter scales (RSFS) and unresolved sub-grid scales (SGS). The RSFS are reconstructed, and the SGS are modeled with a dynamic eddy viscosity/diffusivity model. The RSFS stresses/fluxes allow backscatter of energy/variance via counter-gradient stresses/fluxes. In high-resolution (100m) simulations of tropical convection use of these turbulence models did not lead to significant differences in cloud water/ice distribution, precipitation flux, or vertical fluxes of momentum and heat. When model resolutions are coarsened, the Smagorinsky and TKE models overestimate cloud ice and produces large-amplitude downward heat flux in the middle troposphere (not found in the high-resolution simulations). This error is a result of unrealistically large eddy diffusivities, i.e., the eddy diffusivity of the DRM is on the order of 1 for the coarse resolution simulations, the eddy diffusivity of the Smagorinsky and TKE model is on the order of 100. Splitting the eddy viscosity/diffusivity scalars into vertical and horizontal components by using different length scales and strain rate components helps to reduce the errors, but does not completely remedy the problem. In contrast, the coarse resolution simulations using the DRM produce results that are more consistent with the high-resolution results, suggesting that the DRM is a more appropriate turbulence model for simulating convection in the TI.

What We Talk About When We Talk About Drought: Tree-ring Perspectives on Model-Data Comparisons in Hydroclimate Research

NASA Astrophysics Data System (ADS)

Cook, B.; Anchukaitis, K. J.

2017-12-01

Comparative analyses of paleoclimate reconstructions and climate model simulations can provide valuable insights into past and future climate events. Conducting meaningful and quantitative comparisons, however, can be difficult for a variety of reasons. Here, we use tree-ring based hydroclimate reconstructions to discuss some best practices for paleoclimate-model comparisons, highlighting recent studies that have successfully used this approach. These analyses have improved our understanding of the Medieval-era megadroughts, ocean forcing of large scale drought patterns, and even climate change contributions to future drought risk. Additional work is needed, however, to better reconcile and formalize uncertainties across observed, modeled, and reconstructed variables. In this regard, process based forward models of proxy-systems will likely be a critical tool moving forward.

Paleoenvironmental reconstruction of the early Neolithic to middle Bronze Age Peña Larga rock shelter (Álava, Spain) from the small mammal record

NASA Astrophysics Data System (ADS)

Rofes, Juan; Zuluaga, Mari Cruz; Murelaga, Xabier; Fernández-Eraso, Javier; Bailon, Salvador; Iriarte, María José; Ortega, Luis Ángel; Alonso-Olazabal, Ainhoa

2013-03-01

The Peña Larga site, a rock shelter on the southern slopes of the Cantabrian cordillera (north Spain), is an archeological deposit covering nearly 4000 years, from the early Neolithic to the middle Bronze Age (Atlantic/Subboreal chronozones). It was used both as a household and as a stable, with a hiatus in the Chalcolithic when it was used as a collective sepulcher. Nearly twenty-eight thousand small vertebrate elements were recovered from its seven stratigraphic units, of which 2553 items were identified to the genus and/or species levels. The assemblage is composed of mammals, birds, reptiles, and amphibians. Of these, small mammals were used for paleoenvironmental reconstruction since they are very sensitive to climatic conditions, the sample sizes are large, and their preservation is good. Their distributions over time, measured in terms of relative abundance, serve as reliable proxies of habitat and climate change. The reconstruction of Peña Larga's past environments based on small mammals roughly coincides with the pollen and the amphibian/reptile records on the local scale, and with that of an ice core from Central Greenland on the global scale. This makes it a valuable tool for comparative purposes both in the regional and continental scales.

Objective spatiotemporal proxy-model comparisons of the Asian monsoon for the last millennium

NASA Astrophysics Data System (ADS)

Anchukaitis, K. J.; Cook, E. R.; Ammann, C. M.; Buckley, B. M.; D'Arrigo, R. D.; Jacoby, G.; Wright, W. E.; Davi, N.; Li, J.

2008-12-01

The Asian monsoon system can be studied using a complementary proxy/simulation approach which evaluates climate models using estimates of past precipitation and temperature, and which subsequently applies the best understanding of the physics of the climate system as captured in general circulation models to evaluate the broad-scale dynamics behind regional paleoclimate reconstructions. Here, we use a millennial-length climate field reconstruction of monsoon season summer (JJA) drought, developed from tree- ring proxies, with coupled climate simulations from NCAR CSM1.4 and CCSM3 to evaluate the cause of large- scale persistent droughts over the last one thousand years. Direct comparisons are made between the external forced response within the climate model and the spatiotemporal field reconstruction. In order to identify patterns of drought associated with internal variability in the climate system, we use a model/proxy analog technique which objectively selects epochs in the model that most closely reproduce those observed in the reconstructions. The concomitant ocean-atmosphere dynamics are then interpreted in order to identify and understand the internal climate system forcing of low frequency monsoon variability. We examine specific periods of extensive or intensive regional drought in the 15th, 17th, and 18th centuries, many of which are coincident with major cultural changes in the region.

Modeling Alaska boreal forests with a controlled trend surface approach

Treesearch

Mo Zhou; Jingjing Liang

2012-01-01

An approach of Controlled Trend Surface was proposed to simultaneously take into consideration large-scale spatial trends and nonspatial effects. A geospatial model of the Alaska boreal forest was developed from 446 permanent sample plots, which addressed large-scale spatial trends in recruitment, diameter growth, and mortality. The model was tested on two sets of...

A protocol for generating a high-quality genome-scale metabolic reconstruction.

PubMed

Thiele, Ines; Palsson, Bernhard Ø

2010-01-01

Network reconstructions are a common denominator in systems biology. Bottom-up metabolic network reconstructions have been developed over the last 10 years. These reconstructions represent structured knowledge bases that abstract pertinent information on the biochemical transformations taking place within specific target organisms. The conversion of a reconstruction into a mathematical format facilitates a myriad of computational biological studies, including evaluation of network content, hypothesis testing and generation, analysis of phenotypic characteristics and metabolic engineering. To date, genome-scale metabolic reconstructions for more than 30 organisms have been published and this number is expected to increase rapidly. However, these reconstructions differ in quality and coverage that may minimize their predictive potential and use as knowledge bases. Here we present a comprehensive protocol describing each step necessary to build a high-quality genome-scale metabolic reconstruction, as well as the common trials and tribulations. Therefore, this protocol provides a helpful manual for all stages of the reconstruction process.

A protocol for generating a high-quality genome-scale metabolic reconstruction

PubMed Central

Thiele, Ines; Palsson, Bernhard Ø.

2011-01-01

Network reconstructions are a common denominator in systems biology. Bottom-up metabolic network reconstructions have developed over the past 10 years. These reconstructions represent structured knowledge-bases that abstract pertinent information on the biochemical transformations taking place within specific target organisms. The conversion of a reconstruction into a mathematical format facilitates myriad computational biological studies including evaluation of network content, hypothesis testing and generation, analysis of phenotypic characteristics, and metabolic engineering. To date, genome-scale metabolic reconstructions for more than 30 organisms have been published and this number is expected to increase rapidly. However, these reconstructions differ in quality and coverage that may minimize their predictive potential and use as knowledge-bases. Here, we present a comprehensive protocol describing each step necessary to build a high-quality genome-scale metabolic reconstruction as well as common trials and tribulations. Therefore, this protocol provides a helpful manual for all stages of the reconstruction process. PMID:20057383

Scalp Reconstruction With Free Latissimus Dorsi Flap in a Patient With Giant Cutis Verticis Gyrata.

PubMed

Mutlu, Ozay Ozkaya; Colak, Ozlem; Canli, Mert; Akcay, Ayberk

2016-09-01

Cutis verticis gyrata is a rare skin disorder characterized by formation of thick skin folds and grooves. Because of the risk of malignant transformation, these lesions must be surgically excised. In this study, the authors aimed to present a successful reconstruction of scalp with free latissimus dorsi musculocutaneous flap after total excision of giant cerebriform intradermal nevus that causes cutis verticis gyrata. An 18-year-old male patient attended to our clinic with a large tumor that covers almost 80% of his scalp. Lesion is diagnosed as cerebriform intradermal nevus. Excision of the tumor and scalp reconstruction with free latissimus dorsi musculocutaneous flap is planned and the patient is operated. Free tissue transfer is one of the best choices for full thickness defects that covers 80% of scalp with its excellent reconstructive and aesthetical results. Reconstruction with free flaps reduces the number of operations necessary to cover the defect unlike serial tissue expansion or staged excision methods. Free flaps are also a good alternative when the patient has not enough hair-bearing tissue to expand. Low donor site morbidity also makes free latissimus dorsi musculocutaneous flaps excellent choice. Cerebriform intradermal nevus is one of the most common causes of cutis verticis gyrata and has an importance due to the current risk of malign transformation. Latissimus dorsi musculocutaneous free flap is a reliable and aesthetically acceptable reconstruction option in the patients of giant cutis verticis gyrata due to sufficient pedicle length, reliable vascularized tissue volume, and large surface area.

Historical fire regimes, reconstructed from land-survey data, led to complexity and fluctuation in sagebrush landscapes.

PubMed

Bukowski, Beth E; Baker, William L

2013-04-01

Sagebrush landscapes provide habitat for Sage-Grouse and other sagebrush obligates, yet historical fire regimes and the structure of historical sagebrush landscapes are poorly known, hampering ecological restoration and management. To remedy this, General Land Office Survey (GLO) survey notes were used to reconstruct over two million hectares of historical vegetation for four sagebrush-dominated (Artemisia spp.) study areas in the western United States. Reconstructed vegetation was analyzed for fire indicators used to identify historical fires and reconstruct historical fire regimes. Historical fire-size distributions were inverse-J shaped, and one fire > 100 000 ha was identified. Historical fire rotations were estimated at 171-342 years for Wyoming big sagebrush (A. tridentata ssp. wyomingensis) and 137-217 years for mountain big sagebrush (A. tridentata ssp. vaseyana). Historical fire and patch sizes were significantly larger in Wyoming big sagebrush than mountain big sagebrush, and historical fire rotations were significantly longer in Wyoming big sagebrush than mountain big sagebrush. Historical fire rotations in Wyoming were longer than those in other study areas. Fine-scale mosaics of burned and unburned area and larger unburned inclusions within fire perimeters were less common than in modern fires. Historical sagebrush landscapes were dominated by large, contiguous areas of sagebrush, though large grass-dominated areas and finer-scale mosaics of grass and sagebrush were also present in smaller amounts. Variation in sagebrush density was a common source of patchiness, and areas classified as "dense" made up 24.5% of total sagebrush area, compared to 16.3% for "scattered" sagebrush. Results suggest significant differences in historical and modern fire regimes. Modern fire rotations in Wyoming big sagebrush are shorter than historical fire rotations. Results also suggest that historical sagebrush landscapes would have fluctuated, because of infrequent episodes of large fires and long periods of recovery and maturity. Due to fragmentation of sagebrush landscapes, the large, contiguous expanses of sagebrush that dominated historically are most at risk and in need of conservation, including both dense and scattered sagebrush. Fire suppression in Wyoming big sagebrush may also be advisable, as modern fire rotations are shorter than their historical counterparts.

3D ELECTRON DENSITY DISTRIBUTIONS IN THE SOLAR CORONA DURING SOLAR MINIMA: ASSESSMENT FOR MORE REALISTIC SOLAR WIND MODELING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patoul, Judith de; Foullon, Claire; Riley, Pete, E-mail: j.depatoul@exeter.ac.uk, E-mail: c.foullon@exeter.ac.uk, E-mail: rileype@saic.com

Knowledge of the electron density distribution in the solar corona put constraints on the magnetic field configurations for coronal modeling and on initial conditions for solar wind modeling. We work with polarized SOHO/LASCO-C2 images from the last two recent minima of solar activity (1996–1997 and 2008–2010), devoid of coronal mass ejections. The goals are to derive the 4D electron density distributions in the corona by applying a newly developed time-dependent tomographic reconstruction method and to compare the results between the two solar minima and with two magnetohydrodynamic models. First, we confirm that the values of the density distribution in thermodynamic models aremore » more realistic than in polytropic ones. The tomography provides more accurate distributions in the polar regions, and we find that the density in tomographic and thermodynamic solutions varies with the solar cycle in both polar and equatorial regions. Second, we find that the highest-density structures do not always correspond to the predicted large-scale heliospheric current sheet or its helmet streamer but can follow the locations of pseudo-streamers. We deduce that tomography offers reliable density distributions in the corona, reproducing the slow time evolution of coronal structures, without prior knowledge of the coronal magnetic field over a full rotation. Finally, we suggest that the highest-density structures show a differential rotation well above the surface depending on how they are magnetically connected to the surface. Such valuable information on the rotation of large-scale structures could help to connect the sources of the solar wind to their in situ counterparts in future missions such as Solar Orbiter and Solar Probe Plus.« less

3D electron density distributions in the solar corona during solar minima: assessment for more realistic solar wind modeling

NASA Astrophysics Data System (ADS)

de Patoul, J.; Foullon, C.; Riley, P.

2015-12-01

Knowledge of the electron density distribution in the solar corona put constraints on the magnetic field configurations for coronal modeling, and on initial conditions for solar wind modeling. We work with polarized SOHO/LASCO-C2 images from the last two recent minima of solar activity (1996-1997 and 2008-2010), devoid of coronal mass ejections. We derive the 4D electron density distributions in the corona by applying a newly developed time-dependent tomographic reconstruction method. First we compare the density distributions obtained from tomography with magnetohydrodynamic (MHD) solutions. The tomography provides more accurate distributions of electron densities in the polar regions, and we find that the observed density varies with the solar cycle in both polar and equatorial regions. Second, we find that the highest-density structures do not always correspond to the predicted large-scale heliospheric current sheet or its helmet streamer but can follow the locations of pseudo-streamers. We conclude that tomography offers reliable density distribution in the corona, reproducing the slow time evolution of coronal structures, without prior knowledge of the coronal magnetic field over a full rotation. Finally, we suggest that the highest-density structures show a differential rotation well above the surface depending on how it is magnetically connected to the surface. Such valuable information on the rotation of large-scale structures could help to connect the sources of the solar wind to their in-situ counterparts in future missions such as Solar Orbiter and Solar Probe Plus. This research combined with the MHD coronal modeling efforts has the potential to increase the reliability for future space weather forecasting.

Large-scale subject-specific cerebral arterial tree modeling using automated parametric mesh generation for blood flow simulation.

PubMed

Ghaffari, Mahsa; Tangen, Kevin; Alaraj, Ali; Du, Xinjian; Charbel, Fady T; Linninger, Andreas A

2017-12-01

In this paper, we present a novel technique for automatic parametric mesh generation of subject-specific cerebral arterial trees. This technique generates high-quality and anatomically accurate computational meshes for fast blood flow simulations extending the scope of 3D vascular modeling to a large portion of cerebral arterial trees. For this purpose, a parametric meshing procedure was developed to automatically decompose the vascular skeleton, extract geometric features and generate hexahedral meshes using a body-fitted coordinate system that optimally follows the vascular network topology. To validate the anatomical accuracy of the reconstructed vasculature, we performed statistical analysis to quantify the alignment between parametric meshes and raw vascular images using receiver operating characteristic curve. Geometric accuracy evaluation showed an agreement with area under the curves value of 0.87 between the constructed mesh and raw MRA data sets. Parametric meshing yielded on-average, 36.6% and 21.7% orthogonal and equiangular skew quality improvement over the unstructured tetrahedral meshes. The parametric meshing and processing pipeline constitutes an automated technique to reconstruct and simulate blood flow throughout a large portion of the cerebral arterial tree down to the level of pial vessels. This study is the first step towards fast large-scale subject-specific hemodynamic analysis for clinical applications. Copyright © 2017 Elsevier Ltd. All rights reserved.

New well pattern optimization methodology in mature low-permeability anisotropic reservoirs

NASA Astrophysics Data System (ADS)

Qin, Jiazheng; Liu, Yuetian; Feng, Yueli; Ding, Yao; Liu, Liu; He, Youwei

2018-02-01

In China, lots of well patterns were designed before people knew the principal permeability direction in low-permeability anisotropic reservoirs. After several years’ production, it turns out that well line direction is unparallel with principal permeability direction. However, traditional well location optimization methods (in terms of the objective function such as net present value and/or ultimate recovery) are inapplicable, since wells are not free to move around in a mature oilfield. Thus, the well pattern optimization (WPO) of mature low-permeability anisotropic reservoirs is a significant but challenging task, since the original well pattern (WP) will be distorted and reconstructed due to permeability anisotropy. In this paper, we investigate the destruction and reconstruction of WP when the principal permeability direction and well line direction are unparallel. A new methodology was developed to quantitatively optimize the well locations of mature large-scale WP through a WPO algorithm on the basis of coordinate transformation (i.e. rotating and stretching). For a mature oilfield, large-scale WP has settled, so it is not economically viable to carry out further infill drilling. This paper circumvents this difficulty by combining the WPO algorithm with the well status (open or shut-in) and schedule adjustment. Finally, this methodology is applied to an example. Cumulative oil production rates of the optimized WP are higher, and water-cut is lower, which highlights the potential of the WPO methodology application in mature large-scale field development projects.

Image-based optimization of coronal magnetic field models for improved space weather forecasting

NASA Astrophysics Data System (ADS)

Uritsky, V. M.; Davila, J. M.; Jones, S. I.; MacNeice, P. J.

2017-12-01

The existing space weather forecasting frameworks show a significant dependence on the accuracy of the photospheric magnetograms and the extrapolation models used to reconstruct the magnetic filed in the solar corona. Minor uncertainties in the magnetic field magnitude and direction near the Sun, when propagated through the heliosphere, can lead to unacceptible prediction errors at 1 AU. We argue that ground based and satellite coronagraph images can provide valid geometric constraints that could be used for improving coronal magnetic field extrapolation results, enabling more reliable forecasts of extreme space weather events such as major CMEs. In contrast to the previously developed loop segmentation codes designed for detecting compact closed-field structures above solar active regions, we focus on the large-scale geometry of the open-field coronal regions up to 1-2 solar radii above the photosphere. By applying the developed image processing techniques to high-resolution Mauna Loa Solar Observatory images, we perform an optimized 3D B-line tracing for a full Carrington rotation using the magnetic field extrapolation code developed S. Jones at al. (ApJ 2016, 2017). Our tracing results are shown to be in a good qualitative agreement with the large-scale configuration of the optical corona, and lead to a more consistent reconstruction of the large-scale coronal magnetic field geometry, and potentially more accurate global heliospheric simulation results. Several upcoming data products for the space weather forecasting community will be also discussed.

CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks.

PubMed

Baumbach, Jan; Brinkrolf, Karina; Czaja, Lisa F; Rahmann, Sven; Tauch, Andreas

2006-02-14

The application of DNA microarray technology in post-genomic analysis of bacterial genome sequences has allowed the generation of huge amounts of data related to regulatory networks. This data along with literature-derived knowledge on regulation of gene expression has opened the way for genome-wide reconstruction of transcriptional regulatory networks. These large-scale reconstructions can be converted into in silico models of bacterial cells that allow a systematic analysis of network behavior in response to changing environmental conditions. CoryneRegNet was designed to facilitate the genome-wide reconstruction of transcriptional regulatory networks of corynebacteria relevant in biotechnology and human medicine. During the import and integration process of data derived from experimental studies or literature knowledge CoryneRegNet generates links to genome annotations, to identified transcription factors and to the corresponding cis-regulatory elements. CoryneRegNet is based on a multi-layered, hierarchical and modular concept of transcriptional regulation and was implemented by using the relational database management system MySQL and an ontology-based data structure. Reconstructed regulatory networks can be visualized by using the yFiles JAVA graph library. As an application example of CoryneRegNet, we have reconstructed the global transcriptional regulation of a cellular module involved in SOS and stress response of corynebacteria. CoryneRegNet is an ontology-based data warehouse that allows a pertinent data management of regulatory interactions along with the genome-scale reconstruction of transcriptional regulatory networks. These models can further be combined with metabolic networks to build integrated models of cellular function including both metabolism and its transcriptional regulation.

Development and Validation of a Short Version of the Anterior Cruciate Ligament Return to Sport After Injury (ACL-RSI) Scale

PubMed Central

Webster, Kate E.; Feller, Julian A.

2018-01-01

Background: The Anterior Cruciate Ligament Return to Sport After Injury (ACL-RSI) scale was developed to measure an athlete’s psychological readiness to return to sport after anterior cruciate ligament (ACL) injury and reconstruction surgery. The scale is being used with increasing frequency in both research and clinical settings. Purpose: To generate and validate a short version of the ACL-RSI scale. Study Design: Cohort study (diagnosis); Level of evidence, 2. Methods: The ACL-RSI scale was administered to 535 patients who had undergone ACL reconstruction surgery. Reliability (Cronbach alpha) was determined and factor analysis of the full scale was undertaken along with a process of item selection and elimination. A second group of 250 patients participated in a predictive validation analysis. This group completed the ACL-RSI scale at 6 months and reported return-to-sport outcomes 12 months following ACL reconstruction surgery. The predictive validity of both scales (full and short versions) was assessed by use of receiver operating characteristic (ROC) curve statistics. Results: The scale was found to have high internal consistency (Cronbach alpha, 0.96), which suggested that item redundancy was present. After an item selection process, the scale was reduced to a 6-item format. Cronbach alpha for the short version was 0.92, and factor analysis confirmed the presence of 1 factor accounting for 71% of the total variance. Scores for the short version were significantly different between patients who had and those who had not returned to sport. Six-month ACL-RSI scores for both the full and short versions had fair to good predictive ability for 12-month return-to-sport outcomes (full version: area under ROC curve, 0.77 [95% CI, 0.7-0.8]; short version: area under ROC curve, 0.75 [95% CI, 0.7-0.8]). Conclusion: A 6-item short version of the ACL-RSI scale was developed from a large cohort of patients undergoing ACL reconstruction. The short version appears to be as robust as the full version for discriminating between and predicting return-to-sport outcomes. The short version of the ACL-RSI may be of use in busy clinical settings to help identify athletes who may find return to sport challenging. PMID:29662909

Analyses of microstructural and elastic properties of porous SOFC cathodes based on focused ion beam tomography

NASA Astrophysics Data System (ADS)

Chen, Zhangwei; Wang, Xin; Giuliani, Finn; Atkinson, Alan

2015-01-01

Mechanical properties of porous SOFC electrodes are largely determined by their microstructures. Measurements of the elastic properties and microstructural parameters can be achieved by modelling of the digitally reconstructed 3D volumes based on the real electrode microstructures. However, the reliability of such measurements is greatly dependent on the processing of raw images acquired for reconstruction. In this work, the actual microstructures of La0.6Sr0.4Co0.2Fe0.8O3-δ (LSCF) cathodes sintered at an elevated temperature were reconstructed based on dual-beam FIB/SEM tomography. Key microstructural and elastic parameters were estimated and correlated. Analyses of their sensitivity to the grayscale threshold value applied in the image segmentation were performed. The important microstructural parameters included porosity, tortuosity, specific surface area, particle and pore size distributions, and inter-particle neck size distribution, which may have varying extent of effect on the elastic properties simulated from the microstructures using FEM. Results showed that different threshold value range would result in different degree of sensitivity for a specific parameter. The estimated porosity and tortuosity were more sensitive than surface area to volume ratio. Pore and neck size were found to be less sensitive than particle size. Results also showed that the modulus was essentially sensitive to the porosity which was largely controlled by the threshold value.

Risk Factors and Predictors of Significant Chondral Surface Change From Primary to Revision Anterior Cruciate Ligament Reconstruction: A MOON and MARS Cohort Study.

PubMed

Magnussen, Robert A; Borchers, James R; Pedroza, Angela D; Huston, Laura J; Haas, Amanda K; Spindler, Kurt P; Wright, Rick W; Kaeding, Christopher C; Allen, Christina R; Anderson, Allen F; Cooper, Daniel E; DeBerardino, Thomas M; Dunn, Warren R; Lantz, Brett A; Mann, Barton; Stuart, Michael J; Albright, John P; Amendola, Annunziato; Andrish, Jack T; Annunziata, Christopher C; Arciero, Robert A; Bach, Bernard R; Baker, Champ L; Bartolozzi, Arthur R; Baumgarten, Keith M; Bechler, Jeffery R; Berg, Jeffrey H; Bernas, Geoffrey A; Brockmeier, Stephen F; Brophy, Robert H; Bush-Joseph, Charles A; Butler, J Brad; Campbell, John D; Carey, James L; Carpenter, James E; Cole, Brian J; Cooper, Jonathan M; Cox, Charles L; Creighton, R Alexander; Dahm, Diane L; David, Tal S; Flanigan, David C; Frederick, Robert W; Ganley, Theodore J; Garofoli, Elizabeth A; Gatt, Charles J; Gecha, Steven R; Giffin, James Robert; Hame, Sharon L; Hannafin, Jo A; Harner, Christopher D; Harris, Norman Lindsay; Hechtman, Keith S; Hershman, Elliott B; Hoellrich, Rudolf G; Hosea, Timothy M; Johnson, David C; Johnson, Timothy S; Jones, Morgan H; Kamath, Ganesh V; Klootwyk, Thomas E; Levy, Bruce A; Ma, C Benjamin; Maiers, G Peter; Marx, Robert G; Matava, Matthew J; Mathien, Gregory M; McAllister, David R; McCarty, Eric C; McCormack, Robert G; Miller, Bruce S; Nissen, Carl W; O'Neill, Daniel F; Owens, Brett D; Parker, Richard D; Purnell, Mark L; Ramappa, Arun J; Rauh, Michael A; Rettig, Arthur C; Sekiya, Jon K; Shea, Kevin G; Sherman, Orrin H; Slauterbeck, James R; Smith, Matthew V; Spang, Jeffrey T; Svoboda, Steven J; Taft, Timothy N; Tenuta, Joachim J; Tingstad, Edwin M; Vidal, Armando F; Viskontas, Darius G; White, Richard A; Williams, James S; Wolcott, Michelle L; Wolf, Brian R; York, James J

2018-03-01

Articular cartilage health is an important issue following anterior cruciate ligament (ACL) injury and primary ACL reconstruction. Factors present at the time of primary ACL reconstruction may influence the subsequent progression of articular cartilage damage. Larger meniscus resection at primary ACL reconstruction, increased patient age, and increased body mass index (BMI) are associated with increased odds of worsened articular cartilage damage at the time of revision ACL reconstruction. Case-control study; Level of evidence, 3. Subjects who had primary and revision data in the databases of the Multicenter Orthopaedics Outcomes Network (MOON) and Multicenter ACL Revision Study (MARS) were included. Reviewed data included chondral surface status at the time of primary and revision surgery, meniscus status at the time of primary reconstruction, primary reconstruction graft type, time from primary to revision ACL surgery, as well as demographics and Marx activity score at the time of revision. Significant progression of articular cartilage damage was defined in each compartment according to progression on the modified Outerbridge scale (increase ≥1 grade) or >25% enlargement in any area of damage. Logistic regression identified predictors of significant chondral surface change in each compartment from primary to revision surgery. A total of 134 patients were included, with a median age of 19.5 years at revision surgery. Progression of articular cartilage damage was noted in 34 patients (25.4%) in the lateral compartment, 32 (23.9%) in the medial compartment, and 31 (23.1%) in the patellofemoral compartment. For the lateral compartment, patients who had >33% of the lateral meniscus excised at primary reconstruction had 16.9-times greater odds of progression of articular cartilage injury than those with an intact lateral meniscus ( P < .001). For the medial compartment, patients who had <33% of the medial meniscus excised at the time of the primary reconstruction had 4.8-times greater odds of progression of articular cartilage injury than those with an intact medial meniscus ( P = .02). Odds of significant chondral surface change increased by 5% in the lateral compartment and 6% in the medial compartment for each increased year of age ( P ≤ .02). For the patellofemoral compartment, the use of allograft in primary reconstruction was associated with a 15-fold increased odds of progression of articular cartilage damage relative to a patellar tendon autograft ( P < .001). Each 1-unit increase in BMI at the time of revision surgery was associated with a 10% increase in the odds of progression of articular cartilage damage ( P = .046) in the patellofemoral compartment. Excision of the medial and lateral meniscus at primary ACL reconstruction increases the odds of articular cartilage damage in the corresponding compartment at the time of revision ACL reconstruction. Increased age is a risk factor for deterioration of articular cartilage in both tibiofemoral compartments, while increased BMI and the use of allograft for primary ACL reconstruction are associated with an increased risk of progression in the patellofemoral compartment.

A reduced-order modeling approach to represent subgrid-scale hydrological dynamics for land-surface simulations: application in a polygonal tundra landscape

DOE PAGES

Pau, G. S. H.; Bisht, G.; Riley, W. J.

2014-09-17

Existing land surface models (LSMs) describe physical and biological processes that occur over a wide range of spatial and temporal scales. For example, biogeochemical and hydrological processes responsible for carbon (CO 2, CH 4) exchanges with the atmosphere range from the molecular scale (pore-scale O 2 consumption) to tens of kilometers (vegetation distribution, river networks). Additionally, many processes within LSMs are nonlinearly coupled (e.g., methane production and soil moisture dynamics), and therefore simple linear upscaling techniques can result in large prediction error. In this paper we applied a reduced-order modeling (ROM) technique known as "proper orthogonal decomposition mapping method" thatmore » reconstructs temporally resolved fine-resolution solutions based on coarse-resolution solutions. We developed four different methods and applied them to four study sites in a polygonal tundra landscape near Barrow, Alaska. Coupled surface–subsurface isothermal simulations were performed for summer months (June–September) at fine (0.25 m) and coarse (8 m) horizontal resolutions. We used simulation results from three summer seasons (1998–2000) to build ROMs of the 4-D soil moisture field for the study sites individually (single-site) and aggregated (multi-site). The results indicate that the ROM produced a significant computational speedup (> 10 3) with very small relative approximation error (< 0.1%) for 2 validation years not used in training the ROM. We also demonstrate that our approach: (1) efficiently corrects for coarse-resolution model bias and (2) can be used for polygonal tundra sites not included in the training data set with relatively good accuracy (< 1.7% relative error), thereby allowing for the possibility of applying these ROMs across a much larger landscape. By coupling the ROMs constructed at different scales together hierarchically, this method has the potential to efficiently increase the resolution of land models for coupled climate simulations to spatial scales consistent with mechanistic physical process representation.« less

Diffusion tensor imaging (DTI) with retrospective motion correction for large-scale pediatric imaging.

PubMed

Holdsworth, Samantha J; Aksoy, Murat; Newbould, Rexford D; Yeom, Kristen; Van, Anh T; Ooi, Melvyn B; Barnes, Patrick D; Bammer, Roland; Skare, Stefan

2012-10-01

To develop and implement a clinical DTI technique suitable for the pediatric setting that retrospectively corrects for large motion without the need for rescanning and/or reacquisition strategies, and to deliver high-quality DTI images (both in the presence and absence of large motion) using procedures that reduce image noise and artifacts. We implemented an in-house built generalized autocalibrating partially parallel acquisitions (GRAPPA)-accelerated diffusion tensor (DT) echo-planar imaging (EPI) sequence at 1.5T and 3T on 1600 patients between 1 month and 18 years old. To reconstruct the data, we developed a fully automated tailored reconstruction software that selects the best GRAPPA and ghost calibration weights; does 3D rigid-body realignment with importance weighting; and employs phase correction and complex averaging to lower Rician noise and reduce phase artifacts. For select cases we investigated the use of an additional volume rejection criterion and b-matrix correction for large motion. The DTI image reconstruction procedures developed here were extremely robust in correcting for motion, failing on only three subjects, while providing the radiologists high-quality data for routine evaluation. This work suggests that, apart from the rare instance of continuous motion throughout the scan, high-quality DTI brain data can be acquired using our proposed integrated sequence and reconstruction that uses a retrospective approach to motion correction. In addition, we demonstrate a substantial improvement in overall image quality by combining phase correction with complex averaging, which reduces the Rician noise that biases noisy data. Copyright © 2012 Wiley Periodicals, Inc.

An HTML5-Based Pure Website Solution for Rapidly Viewing and Processing Large-Scale 3D Medical Volume Reconstruction on Mobile Internet

PubMed Central

Chen, Xin; Zhang, Ye; Zhang, Jingna; Li, Ying; Mo, Xuemei; Chen, Wei

2017-01-01

This study aimed to propose a pure web-based solution to serve users to access large-scale 3D medical volume anywhere with good user experience and complete details. A novel solution of the Master-Slave interaction mode was proposed, which absorbed advantages of remote volume rendering and surface rendering. On server side, we designed a message-responding mechanism to listen to interactive requests from clients (Slave model) and to guide Master volume rendering. On client side, we used HTML5 to normalize user-interactive behaviors on Slave model and enhance the accuracy of behavior request and user-friendly experience. The results showed that more than four independent tasks (each with a data size of 249.4 MB) could be simultaneously carried out with a 100-KBps client bandwidth (extreme test); the first loading time was <12 s, and the response time of each behavior request for final high quality image remained at approximately 1 s, while the peak value of bandwidth was <50-KBps. Meanwhile, the FPS value for each client was ≥40. This solution could serve the users by rapidly accessing the application via one URL hyperlink without special software and hardware requirement in a diversified network environment and could be easily integrated into other telemedical systems seamlessly. PMID:28638406

An HTML5-Based Pure Website Solution for Rapidly Viewing and Processing Large-Scale 3D Medical Volume Reconstruction on Mobile Internet.

PubMed

Qiao, Liang; Chen, Xin; Zhang, Ye; Zhang, Jingna; Wu, Yi; Li, Ying; Mo, Xuemei; Chen, Wei; Xie, Bing; Qiu, Mingguo

2017-01-01

This study aimed to propose a pure web-based solution to serve users to access large-scale 3D medical volume anywhere with good user experience and complete details. A novel solution of the Master-Slave interaction mode was proposed, which absorbed advantages of remote volume rendering and surface rendering. On server side, we designed a message-responding mechanism to listen to interactive requests from clients ( Slave model) and to guide Master volume rendering. On client side, we used HTML5 to normalize user-interactive behaviors on Slave model and enhance the accuracy of behavior request and user-friendly experience. The results showed that more than four independent tasks (each with a data size of 249.4 MB) could be simultaneously carried out with a 100-KBps client bandwidth (extreme test); the first loading time was <12 s, and the response time of each behavior request for final high quality image remained at approximately 1 s, while the peak value of bandwidth was <50-KBps. Meanwhile, the FPS value for each client was ≥40. This solution could serve the users by rapidly accessing the application via one URL hyperlink without special software and hardware requirement in a diversified network environment and could be easily integrated into other telemedical systems seamlessly.