Scaling theory of temporal correlations and size-dependent fluctuations in the traded value of stocks

NASA Astrophysics Data System (ADS)

Eisler, Zoltán; Kertész, János

2006-04-01

Records of the traded value fi of stocks display fluctuation scaling, a proportionality between the standard deviation σi and the average ⟨fi⟩ : σi∝⟨fi⟩α , with a strong time scale dependence α(Δt) . The nontrivial (i.e., neither 0.5 nor 1) value of α may have different origins and provides information about the microscopic dynamics. We present a set of stylized facts and then show their connection to such behavior. The functional form α(Δt) originates from two aspects of the dynamics: Stocks of larger companies both tend to be traded in larger packages and also display stronger correlations of traded value. The results are integrated into a general framework that can be applied to a wide range of complex systems.

Dynamics of Phenanthrenequinone on Carbon Nano-Onion Surfaces Probed by Quasielastic Neutron Scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anjos, Daniela M; Mamontov, Eugene; Brown, Gilbert M

We used quasielastic neutron scattering (QENS) to study the dynamics of phenanthrenequinone (PQ) on the surface of onion-like carbon (OLC), or so called carbon onions, as a function of surface coverage and temperature. For both the high- and low-coverage samples, we observed two diffusion processes; a faster process and nearly an order of magnitude slower process. On the high-coverage surface, the slow diffusion process is of long-range translational character, whereas the fast diffusion process is spatially localized on the length scale of ~ 4.7 . On the low-coverage surface, both diffusion processes are spatially localized; on the same length scalemore » of ~ 4.7 for the fast diffusion and a somewhat larger length scale for the slow diffusion. Arrhenius temperature dependence is observed except for the long-range diffusion on the high-coverage surface. We attribute the fast diffusion process to the generic localized in-cage dynamics of PQ molecules, and the slow diffusion process to the long-range translational dynamics of PQ molecules, which, depending on the coverage, may be either spatially restricted, or long-range. On the low-coverage surface, uniform surface coverage is not attained, and the PQ molecules experience the effect of spatial constraints on their long-range translational dynamics. Unexpectedly, the dynamics of PQ molecules on OLC as a function of temperature and surface coverage bears qualitative resemblance to the dynamics of water molecules on oxide surfaces, including practically temperature-independent residence times for the low-coverage surface. The dynamics features that we observed may be universal across different classes of surface adsorbates.« less

35-GHz radar sensor for automotive collision avoidance

NASA Astrophysics Data System (ADS)

Zhang, Jun

1999-07-01

This paper describes the development of a radar sensor system used for automotive collision avoidance. Because the heavy truck may have great larger radar cross section than a motorcyclist has, the radar receiver may have a large dynamic range. And multi-targets at different speed may confuse the echo spectrum causing the ambiguity between range and speed of target. To get more information about target and background and to adapt to the large dynamic range and multi-targets, a frequency modulated and pseudo- random binary sequences phase modulated continuous wave radar system is described. The analysis of this double- modulation system is given. A high-speed signal processing and data processing component are used to process and combine the data and information from echo at different direction and at every moment.

Emergence of evolutionary cycles in size-structured food webs.

PubMed

Ritterskamp, Daniel; Bearup, Daniel; Blasius, Bernd

2016-11-07

The interplay of population dynamics and evolution within ecological communities has been of long-standing interest for ecologists and can give rise to evolutionary cycles, e.g. taxon cycles. Evolutionary cycling was intensely studied in small communities with asymmetric competition; the latter drives the evolutionary processes. Here we demonstrate that evolutionary cycling arises naturally in larger communities if trophic interactions are present, since these are intrinsically asymmetric. To investigate the evolutionary dynamics of a trophic community, we use an allometric food web model. We find that evolutionary cycles emerge naturally for a large parameter ranges. The origin of the evolutionary dynamics is an intrinsic asymmetry in the feeding kernel which creates an evolutionary ratchet, driving species towards larger bodysize. We reveal different kinds of cycles: single morph cycles, and coevolutionary and mixed cycling of complete food webs. The latter refers to the case where each trophic level can have different evolutionary dynamics. We discuss the generality of our findings and conclude that ongoing evolution in food webs may be more frequent than commonly believed. Copyright © 2016 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smedskjaer, Morten M., E-mail: mos@bio.aau.dk; Bauchy, Mathieu; Mauro, John C.

The properties of glass are determined not only by temperature, pressure, and composition, but also by their complete thermal and pressure histories. Here, we show that glasses of identical composition produced through thermal annealing and through quenching from elevated pressure can result in samples with identical density and mean interatomic distances, yet different bond angle distributions, medium-range structures, and, thus, macroscopic properties. We demonstrate that hardness is higher when the density increase is obtained through thermal annealing rather than through pressure-quenching. Molecular dynamics simulations reveal that this arises because pressure-quenching has a larger effect on medium-range order, while annealing hasmore » a larger effect on short-range structures (sharper bond angle distribution), which ultimately determine hardness according to bond constraint theory. Our work could open a new avenue towards industrially useful glasses that are identical in terms of composition and density, but with differences in thermodynamic, mechanical, and rheological properties due to unique structural characteristics.« less

An interferometric fiber optic hydrophone with large upper limit of dynamic range

NASA Astrophysics Data System (ADS)

Zhang, Lei; Kan, Baoxi; Zheng, Baichao; Wang, Xuefeng; Zhang, Haiyan; Hao, Liangbin; Wang, Hailiang; Hou, Zhenxing; Yu, Wenpeng

2017-10-01

Interferometric fiber optic hydrophone based on heterodyne detection is used to measure the missile dropping point in the sea. The signal caused by the missile dropping in the water will be too large to be detected, so it is necessary to boost the upper limit of dynamic range (ULODR) of fiber optic hydrophone. In this article we analysis the factors which influence the ULODR of fiber optic hydrophone based on heterodyne detection, the ULODR is decided by the sampling frequency fsam and the heterodyne frequency Δf. The sampling frequency and the heterodyne frequency should be satisfied with the Nyquist sampling theorem which fsam will be two times larger than Δf, in this condition the ULODR is depended on the heterodyne frequency. In order to enlarge the ULODR, the Nyquist sampling theorem was broken, and we proposed a fiber optic hydrophone which the heterodyne frequency is larger than the sampling frequency. Both the simulation and experiment were done in this paper, the consequences are similar: When the sampling frequency is 100kHz, the ULODR of large heterodyne frequency fiber optic hydrophone is 2.6 times larger than that of the small heterodyne frequency fiber optic hydrophone. As the heterodyne frequency is larger than the sampling frequency, the ULODR is depended on the sampling frequency. If the sampling frequency was set at 2MHz, the ULODR of fiber optic hydrophone based on heterodyne detection will be boosted to 1000rad at 1kHz, and this large heterodyne fiber optic hydrophone can be applied to locate the drop position of the missile in the sea.

Early dynamics of the semantic priming shift

PubMed Central

Lavigne, Frédéric; Chanquoy, Lucile; Dumercy, Laurent; Vitu, Françoise

2013-01-01

Semantic processing of sequences of words requires the cognitive system to keep several word meanings simultaneously activated in working memory with limited capacity. The real- time updating of the sequence of word meanings relies on dynamic changes in the associates to the words that are activated. Protocols involving two sequential primes report a semantic priming shift from larger priming of associates to the first prime to larger priming of associates to the second prime, in a range of long SOAs (stimulus-onset asynchronies) between the second prime and the target. However, the possibility for an early semantic priming shift is still to be tested, and its dynamics as a function of association strength remain unknown. Three multiple priming experiments are proposed that cross-manipulate association strength between each of two successive primes and a target, for different values of short SOAs and prime durations. Results show an early priming shift ranging from priming of associates to the first prime only to priming of strong associates to the first prime and all of the associates to the second prime. We investigated the neural basis of the early priming shift by using a network model of spike frequency adaptive cortical neurons (e.g., Deco & Rolls, 2005), able to code different association strengths between the primes and the target. The cortical network model provides a description of the early dynamics of the priming shift in terms of pro-active and retro-active interferences within populations of excitatory neurons regulated by fast and unselective inhibitory feedback. PMID:23717346

Spatial and temporal dynamics of fucoid populations (Ascophyllum nodosum and Fucus serratus): a comparison between central and range edge populations.

PubMed

Araújo, Rita M; Serrão, Ester A; Sousa-Pinto, Isabel; Åberg, Per

2014-01-01

Persistence of populations at range edges relies on local population dynamics and fitness, in the case of geographically isolated populations of species with low dispersal potential. Focusing on spatial variations in demography helps to predict the long-term capability for persistence of populations across the geographical range of species' distribution. The demography of two ecological and phylogenetically close macroalgal species with different life history characteristics was investigated by using stochastic, stage-based matrix models. Populations of Ascophyllum nodosum and Fucus serratus were sampled for up to 4 years at central locations in France and at their southern range limits in Portugal. The stochastic population growth rate (λ(s)) of A. nodosum was lower and more variable in central than in southern sites whilst for F. serratus this trend was reversed with λ(s) much lower and more variable in southern than in central populations. Individuals were larger in central than in southern populations for both species, which was reflected in the lower transition probabilities of individuals to larger size classes and higher probability of shrinkage in the southern populations. In both central and southern populations elasticity analysis (proportional sensitivity) of population growth rate showed that fertility elements had a small contribution to λ(s) that was more sensitive to changes in matrix transitions corresponding to survival. The highest elasticities were found for loop transitions in A. nodosum and for growth to larger size classes in F. serratus. Sensitivity analysis showed high selective pressure on individual growth for both species at both locations. The results of this study highlight the deterministic role of species-specific life-history traits in population demography across the geographical range of species. Additionally, this study demonstrates that individuals' life-transitions differ in vulnerability to environmental variability and shows the importance of vegetative compared to reproductive stages for the long-term persistence of populations.

Technical Competencies Applied in Experimental Fluid Dynamics

NASA Astrophysics Data System (ADS)

Tagg, Randall

2017-11-01

The practical design, construction, and operation of fluid dynamics experiments require a broad range of competencies. Three types are instrumental, procedural, and design. Respective examples would be operation of a spectrum analyzer, soft-soldering or brazing flow plumbing, and design of a small wind tunnel. Some competencies, such as the selection and installation of pumping systems, are unique to fluid dynamics and fluids engineering. Others, such as the design and construction of electronic amplifiers or optical imaging systems, overlap with other fields. Thus the identification and development of learning materials and methods for instruction are part of a larger effort to identify competencies needed in active research and technical innovation.

Voltage Imaging of Waking Mouse Cortex Reveals Emergence of Critical Neuronal Dynamics

PubMed Central

Scott, Gregory; Fagerholm, Erik D.; Mutoh, Hiroki; Leech, Robert; Sharp, David J.; Shew, Woodrow L.

2014-01-01

Complex cognitive processes require neuronal activity to be coordinated across multiple scales, ranging from local microcircuits to cortex-wide networks. However, multiscale cortical dynamics are not well understood because few experimental approaches have provided sufficient support for hypotheses involving multiscale interactions. To address these limitations, we used, in experiments involving mice, genetically encoded voltage indicator imaging, which measures cortex-wide electrical activity at high spatiotemporal resolution. Here we show that, as mice recovered from anesthesia, scale-invariant spatiotemporal patterns of neuronal activity gradually emerge. We show for the first time that this scale-invariant activity spans four orders of magnitude in awake mice. In contrast, we found that the cortical dynamics of anesthetized mice were not scale invariant. Our results bridge empirical evidence from disparate scales and support theoretical predictions that the awake cortex operates in a dynamical regime known as criticality. The criticality hypothesis predicts that small-scale cortical dynamics are governed by the same principles as those governing larger-scale dynamics. Importantly, these scale-invariant principles also optimize certain aspects of information processing. Our results suggest that during the emergence from anesthesia, criticality arises as information processing demands increase. We expect that, as measurement tools advance toward larger scales and greater resolution, the multiscale framework offered by criticality will continue to provide quantitative predictions and insight on how neurons, microcircuits, and large-scale networks are dynamically coordinated in the brain. PMID:25505314

Dynamics of microemulsions bridged with hydrophobically end-capped star polymers studied by neutron spin-echo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoffmann, I., E-mail: ingo.hoffmann@tu-berlin.de; Institut Max von Laue-Paul Langevin; Malo de Molina, Paula

2014-01-21

The mesoscopic dynamical properties of oil-in-water microemulsions (MEs) bridged with telechelic polymers of different number of arms and with different lengths of hydrophobic stickers were studied with neutron spin-echo (NSE) probing the dynamics in the size range of individual ME droplets. These results then were compared to those of dynamicic light scattering (DLS) which allow to investigate the dynamics on a much larger length scale. Studies were performed as a function of the polymer concentration, number of polymer arms, and length of the hydrophobic end-group. In general it is observed that the polymer bridging has a rather small influence onmore » the local dynamics, despite the fact that the polymer addition leads to an increase of viscosity by several orders of magnitude. In contrast to results from rheology and DLS, where the dynamics on much larger length and time scales are observed, NSE shows that the linear polymer is more efficient in arresting the motion of individual ME droplets. This finding can be explained by a simple simulation, merely by the fact that the interconnection of droplets becomes more efficient with a decreasing number of arms. This means that the dynamics observed on the short and on the longer length scale depend in an opposite way on the number of arms and hydrophobic stickers.« less

Temperature Dependence of the Thermal Conductivity of Single Wall Carbon Nanotubes

NASA Technical Reports Server (NTRS)

Osman, Mohamed A.; Srivastava, Deepak

2000-01-01

The thermal conductivity of several single wall carbon nanotubes (CNT) has been calculated over a temperature range of 100-500 K using molecular dynamics simulations with Tersoff-Brenner potential for C-C interactions. In all cases, starting from similar values at 100K, thermal conductivities show a peaking behavior before falling off at higher temperatures. The peak position shifts to higher temperatures for nanotubes of larger diameter, and no significant dependence on the tube chirality is observed. It is shown that this phenomenon is due to onset of Umklapp scattering, which shifts to higher temperatures for nanotubes of larger diameter.

Coarsening dynamics in condensing zero-range processes and size-biased birth death chains

NASA Astrophysics Data System (ADS)

Jatuviriyapornchai, Watthanan; Grosskinsky, Stefan

2016-05-01

Zero-range processes with decreasing jump rates are well known to exhibit a condensation transition under certain conditions on the jump rates, and the dynamics of this transition continues to be a subject of current research interest. Starting from homogeneous initial conditions, the time evolution of the condensed phase exhibits an interesting coarsening phenomenon of mass transport between cluster sites characterized by a power law. We revisit the approach in Godrèche (2003 J. Phys. A: Math. Gen. 36 6313) to derive effective single site dynamics which form a nonlinear birth death chain describing the coarsening behavior. We extend these results to a larger class of parameter values, and introduce a size-biased version of the single site process, which provides an effective tool to analyze the dynamics of the condensed phase without finite size effects and is the main novelty of this paper. Our results are based on a few heuristic assumptions and exact computations, and are corroborated by detailed simulation data.

Differential dynamic microscopy of weakly scattering and polydisperse protein-rich clusters

NASA Astrophysics Data System (ADS)

Safari, Mohammad S.; Vorontsova, Maria A.; Poling-Skutvik, Ryan; Vekilov, Peter G.; Conrad, Jacinta C.

2015-10-01

Nanoparticle dynamics impact a wide range of biological transport processes and applications in nanomedicine and natural resource engineering. Differential dynamic microscopy (DDM) was recently developed to quantify the dynamics of submicron particles in solutions from fluctuations of intensity in optical micrographs. Differential dynamic microscopy is well established for monodisperse particle populations, but has not been applied to solutions containing weakly scattering polydisperse biological nanoparticles. Here we use bright-field DDM (BDDM) to measure the dynamics of protein-rich liquid clusters, whose size ranges from tens to hundreds of nanometers and whose total volume fraction is less than 10-5. With solutions of two proteins, hemoglobin A and lysozyme, we evaluate the cluster diffusion coefficients from the dependence of the diffusive relaxation time on the scattering wave vector. We establish that for weakly scattering populations, an optimal thickness of the sample chamber exists at which the BDDM signal is maximized at the smallest sample volume. The average cluster diffusion coefficient measured using BDDM is consistently lower than that obtained from dynamic light scattering at a scattering angle of 90∘. This apparent discrepancy is due to Mie scattering from the polydisperse cluster population, in which larger clusters preferentially scatter more light in the forward direction.

Synchronous digitization for high dynamic range lock-in amplification in beam-scanning microscopy

PubMed Central

Muir, Ryan D.; Sullivan, Shane Z.; Oglesbee, Robert A.; Simpson, Garth J.

2014-01-01

Digital lock-in amplification (LIA) with synchronous digitization (SD) is shown to provide significant signal to noise (S/N) and linear dynamic range advantages in beam-scanning microscopy measurements using pulsed laser sources. Direct comparisons between SD-LIA and conventional LIA in homodyne second harmonic generation measurements resulted in S/N enhancements consistent with theoretical models. SD-LIA provided notably larger S/N enhancements in the limit of low light intensities, through the smooth transition between photon counting and signal averaging developed in previous work. Rapid beam scanning instrumentation with up to video rate acquisition speeds minimized photo-induced sample damage. The corresponding increased allowance for higher laser power without sample damage is advantageous for increasing the observed signal content. PMID:24689588

The Global Optimization of Pt13 Cluster Using the First-Principle Molecular Dynamics with the Quenching Technique

NASA Astrophysics Data System (ADS)

Chen, Xiangping; Duan, Haiming; Cao, Biaobing; Long, Mengqiu

2018-03-01

The high-temperature first-principle molecular dynamics method used to obtain the low energy configurations of clusters [L. L. Wang and D. D. Johnson, PRB 75, 235405 (2007)] is extended to a considerably large temperature range by combination with the quenching technique. Our results show that there are strong correlations between the possibilities for obtaining the ground-state structure and the temperatures. Larger possibilities can be obtained at relatively low temperatures (as corresponds to the pre-melting temperature range). Details of the structural correlation with the temperature are investigated by taking the Pt13 cluster as an example, which suggests a quite efficient method to obtain the lowest-energy geometries of metal clusters.

Viscosity, relaxation time, and dynamics within a model asphalt of larger molecules

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Derek D.; Greenfield, Michael L., E-mail: greenfield@egr.uri.edu

2014-01-21

The dynamics properties of a new “next generation” model asphalt system that represents SHRP AAA-1 asphalt using larger molecules than past models is studied using molecular simulation. The system contains 72 molecules distributed over 12 molecule types that range from nonpolar branched alkanes to polar resins and asphaltenes. Molecular weights range from 290 to 890 g/mol. All-atom molecular dynamics simulations conducted at six temperatures from 298.15 to 533.15 K provide a wealth of correlation data. The modified Kohlrausch-Williams-Watts equation was regressed to reorientation time correlation functions and extrapolated to calculate average rotational relaxation times for individual molecules. The rotational relaxationmore » rate of molecules decreased significantly with increasing size and decreasing temperature. Translational self-diffusion coefficients followed an Arrhenius dependence. Similar activation energies of ∼42 kJ/mol were found for all 12 molecules in the model system, while diffusion prefactors spanned an order of magnitude. Viscosities calculated directly at 533.15 K and estimated at lower temperatures using the Debye-Stokes-Einstein relationship were consistent with experimental data for asphalts. The product of diffusion coefficient and rotational relaxation time showed only small changes with temperature above 358.15 K, indicating rotation and translation that couple self-consistently with viscosity. At lower temperatures, rotation slowed more than diffusion.« less

Slope-assisted BOTDA based on vector SBS and frequency-agile technique for wide-strain-range dynamic measurements.

PubMed

Zhou, Dengwang; Dong, Yongkang; Wang, Benzhang; Jiang, Taofei; Ba, Dexin; Xu, Pengbai; Zhang, Hongying; Lu, Zhiwei; Li, Hui

2017-02-06

We present a slope-assisted BOTDA system based on the vector stimulated Brillouin scattering (SBS) and frequency-agile technique (FAT) for the wide-strain-range dynamic measurement. A dimensionless coefficient K defined as the ratio of Brillouin phase-shift to gain is employed to demodulate the strain of the fiber, and it is immune to the power fluctuation of pump pulse and has a linear relation of the frequency detuning for the continuous pump and Stokes waves. For a 30ns-square pump pulse, the available frequency span of the K spectrum can reach up to 200MHz, which is larger than fourfold of 48MHz-linewidth of Brillouin gain spectrum. For a single-slope assisted BOTDA, dynamic strain measurement with the maximum strain of 2467.4με and the vibration frequency components of 10.44Hz and 20.94Hz is obtained. For a multi-slope-assisted BOTDA, dynamic measurement with the strain variation up to 5372.9με and the vibration frequency components of 5.58Hz and 11.14Hz is achieved by using FAT to extend the strain range.

Food web structure shaped by habitat size and climate across a latitudinal gradient.

PubMed

Romero, Gustavo Q; Piccoli, Gustavo C O; de Omena, Paula M; Gonçalves-Souza, Thiago

2016-10-01

Habitat size and climate are known to affect the trophic structure and dynamics of communities, but their interactive effects are poorly understood. Organisms from different trophic levels vary in terms of metabolic requirements and heat dissipation. Indeed, larger species such as keystone predators require more stable climatic conditions than their prey. Likewise, habitat size disproportionally affects large-sized predators, which require larger home ranges and are thus restricted to larger habitats. Therefore, food web structure in patchy ecosystems is expected to be shaped by habitat size and climate variations. Here we investigate this prediction using natural aquatic microcosm (bromeliad phytotelmata) food webs composed of litter resources (mainly detritus), detritivores, mesopredators, and top predators (damselflies). We surveyed 240 bromeliads of varying sizes (water retention capacity) across 12 open restingas in SE Brazil spread across a wide range of tropical latitudes (-12.6° to -27.6°, ca. 2,000 km) and climates (Δ mean annual temperature = 5.3°C). We found a strong increase in predator-to-detritivore mass ratio with habitat size, which was representative of a typical inverted trophic pyramid in larger ecosystems. However, this relationship was contingent among the restingas; slopes of linear models were steeper in more stable and favorable climates, leading to inverted trophic pyramids (and top-down control) being more pronounced in environments with more favorable climatic conditions. By contrast, detritivore-resource and mesopredator-detritivore mass ratios were not affected by habitat size or climate variations across latitudes. Our results highlight that the combined effects of habitat size, climate and predator composition are pivotal to understanding the impacts of multiple environmental factors on food web structure and dynamics. © 2016 by the Ecological Society of America.

The Eel River, northwestern California; high sediment yields from a dynamic landscape

Treesearch

Thomas E. Lisle

1990-01-01

The Eel River draining the Coast Range of northwestern California has the highest recorded average suspended sediment yield per drainage area of any river of its size or larger unaffected by volcanic eruptions or active glaciers in the conterminous United States (1,720 t/km 2 yr from 9,390 km 2 ; Brown and Ritter, 1971).

FIR Detector Sensitivity, Dynamic Range, and Multiplexing Requirements for the Origins Space Telescope (OST)

NASA Astrophysics Data System (ADS)

Staguhn, Johannes G.

2018-05-01

Spectroscopic, cold, space-based mid-to-far-infrared (FIR) missions, such as the Origins Space Telescope, will require large (tens of kilopixels), ultra-sensitive FIR detector arrays with sufficient dynamic range and high-density multiplexing schemes for the readout, in order to optimize the scientific return while staying within a realistic cost range. Issues like power consumption of multiplexers and their readout are significantly more important for space missions than they are for ground-based or suborbital applications. In terms of the detectors and their configuration into large arrays, significant development efforts are needed even for both of the most mature candidate superconducting detector technologies, namely transition edge sensors and (microwave) kinetic inductance detectors. Here we explore both practical and fundamental limits for those technologies in order to lay out a realistic path forward for both technologies. We conclude that beyond the need to enhance the detector sensitivities and pixel numbers by about an order of magnitude over currently existing devices, improved concepts for larger dynamic range and multiplexing density will be needed in order to optimize the scientific return of future cold FIR space missions. Background-limited, very high spectral resolution instruments will require photon-counting detectors.

Water Dynamics in the Hydration Shells of Biomolecules

PubMed Central

2017-01-01

The structure and function of biomolecules are strongly influenced by their hydration shells. Structural fluctuations and molecular excitations of hydrating water molecules cover a broad range in space and time, from individual water molecules to larger pools and from femtosecond to microsecond time scales. Recent progress in theory and molecular dynamics simulations as well as in ultrafast vibrational spectroscopy has led to new and detailed insight into fluctuations of water structure, elementary water motions, electric fields at hydrated biointerfaces, and processes of vibrational relaxation and energy dissipation. Here, we review recent advances in both theory and experiment, focusing on hydrated DNA, proteins, and phospholipids, and compare dynamics in the hydration shells to bulk water. PMID:28248491

Differential Microscopic Mobility of Components within a Deep Eutectic Solvent

DOE PAGES

Wagle, Durgesh V.; Baker, Gary A.; Mamontov, Eugene

2015-07-13

From macroscopic measurements of deep eutectic solvents such as glyceline (1:2 molar ratio of choline chloride to glycerol), the long-range translational diffusion of the larger cation (choline) is known to be slower compared to that of the smaller hydrogen bond donor (glycerol). However, when the diffusion dynamics are analyzed on the subnanometer length scale, we discover that the displacements associated with the localized diffusive motions are actually larger for choline. This counterintuitive diffusive behavior can be understood as follows. The localized diffusive motions confined in the transient cage of neighbor particles, which precede the cage-breaking long-range diffusion jumps, are moremore » spatially constrained for glycerol than for choline because of the stronger hydrogen bonds the former makes with chloride anions. The implications of differential localized mobility of the constituents should be especially important for applications where deep eutectic solvents are confined on the nanometer length scale and their long-range translational diffusion is strongly inhibited (e.g., within microporous media).« less

The effect of delay line on the performance of a fiber optic interferometric sensor

NASA Astrophysics Data System (ADS)

Lin, Yung-Li; Lin, Ken-Huang; Lin, Wuu-Wen; Chen, Mao-Hsiung

2007-09-01

The optical fiber has the features of low loss and wide bandwidth; it has replaced the coaxial cable as the mainstream of the communication system in recent years. Because of its high sensitivity characteristic, the interferometer is usually applied to long distance, weak signal detection. In general, if the area to be monitored is located far away, the weak signal will make it uneasy to detect. An interferometer is used for phase detection. Thus, the hydrophone which is based on interferometric fiber optic sensor has extremely high sensitivity. Sagnac interferometric hydrophone has low noise of marine environment, which is more suitably used to detect underwater acoustic signal than that of a Mach-Zehnder interferometer. In this paper, we propose the configuration of dual Sagnac interferometer, and use the mathematical methods to drive and design optimal two delay fiber lengths, which can enlarge the dynamic range of underwater acoustic detection. In addition, we also use software simulation to design optimal two delay fiber lengths. The experimental configuration of dual Sagnac interferometer with two optical delay line is shown as Fig. 1. The maximum and minimum measurable phase signal value of dual Sagnac interferometer (L II=2 km, L 4=222.2 m), shown in Fig. 3. The fiber optic sensor head is of mandrel type. The acoustic window is made of silicon rubbers. It was shown that we can increase their sensitivities by increasing number of wrapping fiber coils. In our experiment, the result shows that among all the mandrel sensor heads, the highest dynamic range is up to 37.6 +/- 1.4 dB, and its sensitivity is -223.3 +/-1.7 dB re V / 1μ Pa. As for the configuration of the optical interferometers, the intensity of the dual Sagnac interferometer is 20 dB larger than its Sagnac counterpart. Its dynamic range is above 66 dB where the frequency ranges is between 50 ~ 400 Hz, which is 24 dB larger than that of the Sagnac interferometer with the sensitivity of -192.0 dB re V / l μPa. In addition, by using software simulation to design optimal lengths of delay fibers, we can increase the dynamic range of interferometer on underwater acoustic detection. This paper verifies that, by means of adjusting the length of these two delay fibers, we can actually increase the dynamic range of acoustic signal detection.

Chemical Dosimeter Tube With Coaxial Sensing Rod

NASA Technical Reports Server (NTRS)

Lueck, Dale E.

1993-01-01

Improved length-of-stain (LOS) chemical dosimeter indicates total dose of chemical vapor in air. Made with rods and tubes of various diameters to obtain various sensitivities and dynamic ranges. Sensitivity larger and dose range smaller when more room for diffusion in gap between tube and rod. Offers greater resistance to changing of color of exposed dye back to color of unexposed condition, greater sensitivity, and higher degree of repeatability. Developed to measure doses of gaseous HCI, dosimeter modified by use of other dyes to indicate doses of other chemical vapors.

Full-motion video analysis for improved gender classification

NASA Astrophysics Data System (ADS)

Flora, Jeffrey B.; Lochtefeld, Darrell F.; Iftekharuddin, Khan M.

2014-06-01

The ability of computer systems to perform gender classification using the dynamic motion of the human subject has important applications in medicine, human factors, and human-computer interface systems. Previous works in motion analysis have used data from sensors (including gyroscopes, accelerometers, and force plates), radar signatures, and video. However, full-motion video, motion capture, range data provides a higher resolution time and spatial dataset for the analysis of dynamic motion. Works using motion capture data have been limited by small datasets in a controlled environment. In this paper, we explore machine learning techniques to a new dataset that has a larger number of subjects. Additionally, these subjects move unrestricted through a capture volume, representing a more realistic, less controlled environment. We conclude that existing linear classification methods are insufficient for the gender classification for larger dataset captured in relatively uncontrolled environment. A method based on a nonlinear support vector machine classifier is proposed to obtain gender classification for the larger dataset. In experimental testing with a dataset consisting of 98 trials (49 subjects, 2 trials per subject), classification rates using leave-one-out cross-validation are improved from 73% using linear discriminant analysis to 88% using the nonlinear support vector machine classifier.

Extending the Dynamic Range of a Time Projection Chamber

NASA Astrophysics Data System (ADS)

Estee, Justin; S πRIT Collaboration

2017-09-01

The use of Time Projection Chambers (TPCs) in intermediate heavy ion reactions faces some challenges in addressing the energy losses that range from the small energy loss of relativistic pions to the large energy loss of slow moving heavy ions. A typical trade-off can be to set the smallest desired signals to be well within the lower limits of the dynamic range of the electronics while allowing for some larger signals to saturate the electronics. With wire plane anodes, signals from readout pads further away from the track remain unsaturated and allow signals from tracks with saturated pads to be accurately recovered. We illustrate this technique using data from the SAMURAI Pion-Reconstruction and Ion-Tracker (S πRIT) TPC , which recently measured pions and light charged particles in collisions of Sn+Sn isotopes. Our method exploits knowledge of how the induced charge distribution depends on the distance from the track to smoothly extend dynamic range even when some of the pads in the track are saturated. To accommodate the analysis of slow moving heavy ions, we have extended the Bichsel energy loss distributions to handle slower moving ions as well. In this talk, I will discuss a combined approach which successfully extends the dynamic range of the TPC electronics. This work is supported by the U.S. DOE under Grant Nos. DE-SC0014530, DE-NA0002923, US NSF Grant No. PHY-1565546 and the Japan MEXT KAKENHI Grant No. 24105004.

Dynamic model of temperature impact on cell viability and major product formation during fed-batch and continuous ethanolic fermentation in Saccharomyces cerevisiae.

PubMed

Amillastre, Emilie; Aceves-Lara, César-Arturo; Uribelarrea, Jean-Louis; Alfenore, Sandrine; Guillouet, Stéphane E

2012-08-01

The impact of the temperature on an industrial yeast strain was investigated in very high ethanol performance fermentation fed-batch process within the range of 30-47 °C. As previously observed with a lab strain, decoupling between growth and glycerol formation occurred at temperature of 36 °C and higher. A dynamic model was proposed to describe the impact of the temperature on the total and viable biomass, ethanol and glycerol production. The model validation was implemented with experimental data sets from independent cultures under different temperatures, temperature variation profiles and cultivation modes. The proposed model fitted accurately the dynamic evolutions for products and biomass concentrations over a wide range of temperature profiles. R2 values were above 0.96 for ethanol and glycerol in most experiments. The best results were obtained at 37 °C in fed-batch and chemostat cultures. This dynamic model could be further used for optimizing and monitoring the ethanol fermentation at larger scale. Copyright © 2012 Elsevier Ltd. All rights reserved.

Investigating the Dynamics of Suicidal Ideation.

PubMed

Hallensleben, Nina; Spangenberg, Lena; Forkmann, Thomas; Rath, Dajana; Hegerl, Ulrich; Kersting, Anette; Kallert, Thomas W; Glaesmer, Heide

2018-01-01

Although the fluctuating nature of suicidal ideation (SI) has been described previously, longitudinal studies investigating the dynamics of SI are scarce. To demonstrate the fluctuation of SI across 6 days and up to 60 measurement points using smartphone-based ecological momentary assessments (EMA). Twenty inpatients with unipolar depression and current and/or lifetime suicidal ideation rated their momentary SI 10 times per day over a 6-day period. Mean squared successive difference (MSSD) was calculated as a measure of variability. Correlations of MSSD with severity of depression, number of previous depressive episodes, and history of suicidal behavior were examined. Individual trajectories of SI are shown to illustrate fluctuation. MSSD values ranged from 0.2 to 21.7. No significant correlations of MSSD with several clinical parameters were found, but there are hints of associations between fluctuation of SI and severity of depression and suicidality. Main limitation of this study is the small sample size leading to low power and probably missing potential effects. Further research with larger samples is necessary to shed light on the dynamics of SI. The results illustrate the dynamic nature and the diversity of trajectories of SI across 6 days in psychiatric inpatients with unipolar depression. Prediction of the fluctuation of SI might be of high clinical relevance. Further research using EMA and sophisticated analyses with larger samples is necessary to shed light on the dynamics of SI.

SU-G-BRA-15: Dosimetric Evaluation of Dynamic Tumor Tracking Radiation Therapy Using Digital Phantom: A Study On Margin and Desired Accuracy of Tracking

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uchida, T; Osanai, M; Homma, N

2016-06-15

Purpose: Dynamic tumor tracking radiation therapy can potentially reduce internal margin without prolongation of irradiation time. However, dynamic tumor tracking technique requires an extra margin (tracking margin, TM) for the uncertainty of tumor localization, prediction, and beam repositioning. The purpose of this study was to evaluate a dosimetric impact caused by TM. Methods: We used 4D XCAT to create 9 digital phantom datasets of different tumor size and motion range: tumor diameter TD=(1, 3, 5) cm and motion range MR=(1, 2, 3) cm. For each dataset, respiratory gating (30%–70% phase) and tumor tracking treatment plans were created using 8-field 3D-CRTmore » by 4D dose calculation implemented in RayStation. The dose constraint was based on RTOG0618. For the tracking plan, TMs of (0, 2.5, 5) mm were considered by surrounding a normal setup margin: SM=5 mm. We calculated V20 of normal lung to evaluate the dosimetric impact for each case, and estimated an equivalent TM that affects the same impact on V20 obtained by the gated plan. Results: The equivalent TMs for (TD=1 cm, MR=2 cm), (TD=1 cm, MR=3 cm), (TD=5 cm, MR=2 cm), and (TD=5 cm, MR=3 cm) were estimated as 1.47 mm, 3.95 mm, 1.04 mm, and 2.13 mm, respectively. The larger the tumor size, the equivalent TM became smaller. On the other hand, the larger the motion range, the equivalent TM was found to be increased. Conclusion: Our results showed the equivalent TM changes depending on tumor size and motion range. The tracking plan with TM less than the equivalent TM achieves a dosimetric impact better than the gated plan in less treatment time. This study was partially supported by JSPS Kakenhi and Varian Medical Systems.« less

Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale.

PubMed

Chavent, Matthieu; Duncan, Anna L; Sansom, Mark Sp

2016-10-01

Molecular dynamics simulations provide a computational tool to probe membrane proteins and systems at length scales ranging from nanometers to close to a micrometer, and on microsecond timescales. All atom and coarse-grained simulations may be used to explore in detail the interactions of membrane proteins and specific lipids, yielding predictions of lipid binding sites in good agreement with available structural data. Building on the success of protein-lipid interaction simulations, larger scale simulations reveal crowding and clustering of proteins, resulting in slow and anomalous diffusional dynamics, within realistic models of cell membranes. Current methods allow near atomic resolution simulations of small membrane organelles, and of enveloped viruses to be performed, revealing key aspects of their structure and functionally important dynamics. Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Analysis of current-driven oscillatory dynamics of single-layer homoepitaxial islands on crystalline conducting substrates

NASA Astrophysics Data System (ADS)

Dasgupta, Dwaipayan; Kumar, Ashish; Maroudas, Dimitrios

2018-03-01

We report results of a systematic study on the complex oscillatory current-driven dynamics of single-layer homoepitaxial islands on crystalline substrate surfaces and the dependence of this driven dynamical behavior on important physical parameters, including island size, substrate surface orientation, and direction of externally applied electric field. The analysis is based on a nonlinear model of driven island edge morphological evolution that accounts for curvature-driven edge diffusion, edge electromigration, and edge diffusional anisotropy. Using a linear theory of island edge morphological stability, we calculate a critical island size at which the island's equilibrium edge shape becomes unstable, which sets a lower bound for the onset of time-periodic oscillatory dynamical response. Using direct dynamical simulations, we study the edge morphological dynamics of current-driven single-layer islands at larger-than-critical size, and determine the actual island size at which the migrating islands undergo a transition from steady to time-periodic asymptotic states through a subcritical Hopf bifurcation. At the highest symmetry of diffusional anisotropy examined, on {111} surfaces of face-centered cubic crystalline substrates, we find that more complex stable oscillatory states can be reached through period-doubling bifurcation at island sizes larger than those at the Hopf points. We characterize in detail the island morphology and dynamical response at the stable time-periodic asymptotic states, determine the range of stability of these oscillatory states terminated by island breakup, and explain the morphological features of the stable oscillating islands on the basis of linear stability theory.

End-monomer Dynamics in Semiflexible Polymers

PubMed Central

Hinczewski, Michael; Schlagberger, Xaver; Rubinstein, Michael; Krichevsky, Oleg; Netz, Roland R.

2009-01-01

Spurred by an experimental controversy in the literature, we investigate the end-monomer dynamics of semiflexible polymers through Brownian hydrodynamic simulations and dynamic mean-field theory. Precise experimental observations over the last few years of end-monomer dynamics in the diffusion of double-stranded DNA have given conflicting results: one study indicated an unexpected Rouse-like scaling of the mean squared displacement (MSD) 〈r2(t)〉 ~ t1/2 at intermediate times, corresponding to fluctuations at length scales larger than the persistence length but smaller than the coil size; another study claimed the more conventional Zimm scaling 〈r2(t)〉 ~ t2/3 in the same time range. Using hydrodynamic simulations, analytical and scaling theories, we find a novel intermediate dynamical regime where the effective local exponent of the end-monomer MSD, α(t) = d log〈r2(t)〉/d log t, drops below the Zimm value of 2/3 for sufficiently long chains. The deviation from the Zimm prediction increases with chain length, though it does not reach the Rouse limit of 1/2. The qualitative features of this intermediate regime, found in simulations and in an improved mean-field theory for semiflexible polymers, in particular the variation of α(t) with chain and persistence lengths, can be reproduced through a heuristic scaling argument. Anomalously low values of the effective exponent α are explained by hydrodynamic effects related to the slow crossover from dynamics on length scales smaller than the persistence length to dynamics on larger length scales. PMID:21359118

Oscillatory brain dynamics associated with the automatic processing of emotion in words.

PubMed

Wang, Lin; Bastiaansen, Marcel

2014-10-01

This study examines the automaticity of processing the emotional aspects of words, and characterizes the oscillatory brain dynamics that accompany this automatic processing. Participants read emotionally negative, neutral and positive nouns while performing a color detection task in which only perceptual-level analysis was required. Event-related potentials and time frequency representations were computed from the concurrently measured EEG. Negative words elicited a larger P2 and a larger late positivity than positive and neutral words, indicating deeper semantic/evaluative processing of negative words. In addition, sustained alpha power suppressions were found for the emotional compared to neutral words, in the time range from 500 to 1000ms post-stimulus. These results suggest that sustained attention was allocated to the emotional words, whereas the attention allocated to the neutral words was released after an initial analysis. This seems to hold even when the emotional content of the words is task-irrelevant. Copyright © 2014 Elsevier Inc. All rights reserved.

Two Non Linear Dynamics Plasma Astrophysics Experiments At LANL

NASA Astrophysics Data System (ADS)

Intrator, T.; Weber, T.; Feng, Y.; Sears, J.; Smith, R. J.; Swan, H.; Hutchinson, T.; Boguski, J.; Gao, K.; Chapdelaine, L.; Dunn, J. P.

2013-12-01

Two laboratory experiments at Los Alamos National Laboratory (LANL) have been built to gain access to a wide range of fundamental plasma physics issues germane to astro, space, and fusion plasmas. The over arching theme is magnetized plasma dynamics that include currents, MHD forces and instabilities, sheared flows and shocks, along with creation and annihilation of magnetic field. The Relaxation Scaling Experiment (RSX) creates current sheets and flux ropes that exhibit fully 3D dynamics, that are observed to kink, bounce, merge and reconnect, shred, and reform in complicated ways. We show recent movies from a large detailed data set that describe the 3D magnetic structure and helicity budget of a driven and dissipative system that spontaneously self saturates a kink instability. The Magnetized Shock Experiment (MSX) uses a Field reversed configuration (FRC) that is ejected at high speed and then stagnated onto a stopping mirror field, which drives a collisionless magnetized shock. A plasmoid accelerator will also access super critical shocks at much larger Alfven Mach numbers. Unique features include access to parallel, oblique and perpendicular shocks, in regions much larger than ion gyro radius and inertial length, large magnetic and fluid Reynolds numbers, and volume for turbulence.

Radiometric calibration method for large aperture infrared system with broad dynamic range.

PubMed

Sun, Zhiyuan; Chang, Songtao; Zhu, Wei

2015-05-20

Infrared radiometric measurements can acquire important data for missile defense systems. When observation is carried out by ground-based infrared systems, a missile is characterized by long distance, small size, and large variation of radiance. Therefore, the infrared systems should be manufactured with a larger aperture to enhance detection ability and calibrated at a broader dynamic range to extend measurable radiance. Nevertheless, the frequently used calibration methods demand an extended-area blackbody with broad dynamic range or a huge collimator for filling the system's field stop, which would greatly increase manufacturing costs and difficulties. To overcome this restriction, a calibration method based on amendment of inner and outer calibration is proposed. First, the principles and procedures of this method are introduced. Then, a shifting strategy of infrared systems for measuring targets with large fluctuations of infrared radiance is put forward. Finally, several experiments are performed on a shortwave infrared system with Φ400  mm aperture. The results indicate that the proposed method cannot only ensure accuracy of calibration but have the advantage of low cost, low power, and high motility. Hence, it is an effective radiometric calibration method in the outfield.

Dispersal, niche breadth and population extinction: colonization ratios predict range size in North American dragonflies.

PubMed

McCauley, Shannon J; Davis, Christopher J; Werner, Earl E; Robeson, Michael S

2014-07-01

Species' range sizes are shaped by fundamental differences in species' ecological and evolutionary characteristics, and understanding the mechanisms determining range size can shed light on the factors responsible for generating and structuring biological diversity. Moreover, because geographic range size is associated with a species' risk of extinction and their ability to respond to global changes in climate and land use, understanding these mechanisms has important conservation implications. Despite the hypotheses that dispersal behaviour is a strong determinant of species range areas, few data are available to directly compare the relationship between dispersal behaviour and range size. Here, we overcome this limitation by combining data from a multispecies dispersal experiment with additional species-level trait data that are commonly hypothesized to affect range size (e.g. niche breadth, local abundance and body size.). This enables us to examine the relationship between these species-level traits and range size across North America for fifteen dragonfly species. Ten models based on a priori predictions about the relationship between species traits and range size were evaluated and two models were identified as good predictors of species range size. These models indicated that only two species' level traits, dispersal behaviour and niche breadth were strongly related to range size. The evidence from these two models indicated that dragonfly species that disperse more often and further had larger North American ranges. Extinction and colonization dynamics are expected to be a key linkage between dispersal behaviour and range size in dragonflies. To evaluate how extinction and colonization dynamics among dragonflies were related to range size we used an independent data set of extinction and colonization rates for eleven dragonfly species and assessed the relationship between these populations rates and North American range areas for these species. We found a negative relationship between North American range size and species' extinction-to-colonization ratios. Our results indicate that metapopulation dynamics act to shape the extent of species' continental distributions. These population dynamics are likely to interact with dispersal behaviour, particularly at species range margins, to determine range limits and ultimately species range sizes. © 2013 The Authors. Journal of Animal Ecology © 2013 British Ecological Society.

Effect of static foot posture on the dynamic stiffness of foot joints during walking.

PubMed

Sanchis-Sales, E; Sancho-Bru, J L; Roda-Sales, A; Pascual-Huerta, J

2018-05-01

The static foot posture has been related to the development of lower limb injuries. This study aimed to investigate the dynamic stiffness of foot joints during gait in the sagittal plane to understand the role of the static foot posture in the development of injuries. Seventy healthy adult male subjects with different static postures, assessed by the Foot Posture Index (FPI) (30 normal, 20 highly pronated and 20 highly supinated), were recruited. Kinematic and kinetic data were recorded using an optical motion capture system and a pressure platform, and dynamic stiffness at the different stages of the stance was calculated from the slopes of the linear regression on the flexion moment-angle curves. The effect of foot type on dynamic stiffness and on ranges of motion and moments was analysed using ANOVAs and post-hoc tests, and linear correlation between dynamic stiffness and FPI was also tested. Highly pronated feet showed a significantly smaller range of motion at the ankle and metatarsophalangeal joints and also a larger range of moments at the metatarsophalangeal joint than highly supinated feet. Dynamic stiffness during propulsion was significantly greater at all foot joints for highly pronated feet, with positive significant correlations with the squared FPI. Highly supinated feet showed greater dynamic stiffness than normal feet, although to a lesser extent. Highly pronated feet during normal gait experienced the greatest decrease in the dorsiflexor moments during propulsion, normal feet being the most balanced regarding work generated and absorbed. Extreme static foot postures show greater dynamic stiffness during propulsion and greater absorbed work, which increases the risk of developing injuries. The data presented may be used when designing orthotics or prostheses, and also when planning surgery that modifies joint stiffness. Copyright © 2018 Elsevier B.V. All rights reserved.

Dynamics of Disorder-Order Transitions in Hard Sphere Colloidal Dispersions in micro-g

NASA Technical Reports Server (NTRS)

Zhu, J. X.; Li, M.; Phan, S. E.; Russel, W. B.; Chaikin, Paul M.; Rogers, Rick; Meyers, W.

1996-01-01

We performed a series of experiments on 0.518 millimeter PMMA spheres suspended in an index matching mixture of decalin and tetralin the microgravity environment provided by the Shuttle Columbia on mission STS-73. The samples ranged in concentration from 0.49 to 0.62. volume fraction (phi) of spheres, which covers the range in which liquid, coexistence, solid and glass phases are expected from Earth bound experiments. Light scattering was used to probe the static structure, and the particle dynamics. Digital and 35 mm photos provided information on the morphology of the crystals. In general, the crystallites grew considerably larger (roughly an order of magnitude larger) than the same samples with identical treatment in 1 g. The dynamic light scattering shows the typical short time diffusion and long time caging effects found in 1 g. The surprises that were encountered in microgravity include the preponderance of random hexagonal close packed (RHCP) structures and the complete absence of the expected face centered cubic (FCC) structure, existence of large dendritic crystals floating in the coexistence samples (where liquid and solid phases coexist) and the rapid crystallization of samples which exist only in glass phase under the influence of one g. These results suggest that colloidal crystal growth is profoundly effected by gravity in yet unrecognized ways. We suspect that the RCHP structure is related to the nonequilibrium growth that is evident from the presence of dendrites. An analysis of the dendritic growth instabilities is presented within the framework of the Ackerson-Schatzel equation.

Microhard MHX2420 Orbital Performance Evaluation Using RT Logic T400CS

NASA Technical Reports Server (NTRS)

TintoreGazulla, Oriol; Lombardi, Mark

2012-01-01

RT Logic allows simulation of Ground Station - satellite communications: Static tests have been successful. Dynamic tests have been performed for simple passes. Future dynamic tests are needed to simulate real orbit communications. Satellite attitude changes antenna gain. Atmospheric and rain losses need to be added. STK Plug-in will be the next step to improve the dynamic tests. There is a possibility of running longer simulations. Simulation of different losses available in the STK Plug-in. Microhard optimization: Effect of Microhard settings on the data throughput have been understood. Optimized settings improve data throughput for LEO communications. Longer hop intervals make transfer of larger packets more efficient (more time between hops in frequency). Use of FEC (Reed-Solomon) reduces the number of retransmissions for long-range or noisy communications.

Quasielastic neutron scattering study of water confined in carbon nanopores

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mavila Chathoth, Suresh; Mamontov, Eugene; Kolesnikov, Alexander I

2011-01-01

Microscopic dynamics of water confined in nanometer and sub-nanometer pores of carbide-derived carbon (CDC) were investigated using quasielastic neutron scattering (QENS). The temperature dependence of the average relaxation time, {tau}, exhibits super-Arrhenius behavior that could be described by Vogel-Fulcher-Tammann (VFT) law in the range from 250 K to 190 K; below this temperature, {tau} follows Arrhenius temperature dependence. The temperature of the dynamic crossover between the two regimes in water confined in the CDC pores is similar to that observed for water in hydrophobic confinement of the larger size, such as 14 {angstrom} ordered mesoporous carbon (CMK) and 16 {angstrom}more » double-wall carbon nanotubes. Thus, the dynamical behavior of water remains qualitatively unchanged even in the very small hydrophobic pores.« less

Experiments on free and impinging supersonic microjets

NASA Astrophysics Data System (ADS)

Phalnikar, K. A.; Kumar, R.; Alvi, F. S.

2008-05-01

The fluid dynamics of microflows has recently commanded considerable attention because of their potential applications. Until now, with a few exceptions, most of the studies have been limited to low speed flows. This experimental study examines supersonic microjets of 100-1,000 μm in size with exit velocities in the range of 300-500 m/s. Such microjets are presently being used to actively control larger supersonic impinging jets, which occur in STOVL (short takeoff and vertical landing) aircraft, cavity flows, and flow separation. Flow properties of free as well as impinging supersonic microjets have been experimentally investigated over a range of geometric and flow parameters. The flowfield is visualized using a micro-schlieren system with a high magnification. These schlieren images clearly show the characteristic shock cell structure typically observed in larger supersonic jets. Quantitative measurements of the jet decay and spreading rates as well as shock cell spacing are obtained using micro-pitot probe surveys. In general, the mean flow features of free microjets are similar to larger supersonic jets operating at higher Reynolds numbers. However, some differences are also observed, most likely due to pronounced viscous effects associated with jets at these small scales. Limited studies of impinging microjets were also conducted. They reveal that, similar to the behavior of free microjets, the flow structure of impinging microjets strongly resembles that of larger supersonic impinging jets.

A terahertz EO detector with large dynamical range, high modulation depth and signal-noise ratio

NASA Astrophysics Data System (ADS)

Pan, Xinjian; Cai, Yi; Zeng, Xuanke; Zheng, Shuiqin; Li, Jingzhen; Xu, Shixiang

2017-05-01

The paper presents a novel design for terahertz (THz) free-space time domain electro-optic (EO) detection where the static birefringent phases of the two balanced arms are set close to zero but opposite to each other. Our theoretical and numerical analyses show this design has much stronger ability to cancel the optical background noise than both THz ellipsometer and traditional crossed polarizer geometry (CPG). Its optical modulation depth is about twice as high as that of traditional CPG, but about ten times as high as that of THz ellipsometer. As for the dynamical range, our improved design is comparable to the THz ellipsometer but obviously larger than the traditional CPG. Some experiments for comparing our improved CPG with traditional CPG agree well with the corresponding theoretical predictions. Our experiments also show that the splitting ratio of the used non-polarization beam splitter is critical for the performance of our design.

Tailored Algorithm for Sensitivity Enhancement of Gas Concentration Sensors Based on Tunable Laser Absorption Spectroscopy.

PubMed

Vargas-Rodriguez, Everardo; Guzman-Chavez, Ana Dinora; Baeza-Serrato, Roberto

2018-06-04

In this work, a novel tailored algorithm to enhance the overall sensitivity of gas concentration sensors based on the Direct Absorption Tunable Laser Absorption Spectroscopy (DA-ATLAS) method is presented. By using this algorithm, the sensor sensitivity can be custom-designed to be quasi constant over a much larger dynamic range compared with that obtained by typical methods based on a single statistics feature of the sensor signal output (peak amplitude, area under the curve, mean or RMS). Additionally, it is shown that with our algorithm, an optimal function can be tailored to get a quasi linear relationship between the concentration and some specific statistics features over a wider dynamic range. In order to test the viability of our algorithm, a basic C 2 H 2 sensor based on DA-ATLAS was implemented, and its experimental measurements support the simulated results provided by our algorithm.

AlGaInAs EML having high extinction ratios fabricated by identical epitaxial layer technique

NASA Astrophysics Data System (ADS)

Deng, Qiufang; Guo, Lu; Liang, Song; Sun, Siwei; Xie, Xiao; Zhu, Hongliang; Wang, Wei

2018-04-01

AlGaInAs electroabsorption-modulated lasers (EMLs) fabricated by identical epitaxial layer technique are demonstrated. The EML device shows an infinite characteristic temperature when the temperature ranges from 20 oC to 30 oC. The integrated modulator has static extinction ratios of larger than 20 dB at a reverse bias voltage of - 2 V. The small signal modulation bandwidth of the modulator is larger than 11 GHz. At 10 Gb/s data modulation, the dynamic extinction ratio is about 9.5 dB in a back to back test configuration. Because only a simple fabrication procedure is needed, our EMLs are promising low cost light sources for optical fiber transmission applications.

The Virtual Brain: Modeling Biological Correlates of Recovery after Chronic Stroke

PubMed Central

Falcon, Maria Inez; Riley, Jeffrey D.; Jirsa, Viktor; McIntosh, Anthony R.; Shereen, Ahmed D.; Chen, E. Elinor; Solodkin, Ana

2015-01-01

There currently remains considerable variability in stroke survivor recovery. To address this, developing individualized treatment has become an important goal in stroke treatment. As a first step, it is necessary to determine brain dynamics associated with stroke and recovery. While recent methods have made strides in this direction, we still lack physiological biomarkers. The Virtual Brain (TVB) is a novel application for modeling brain dynamics that simulates an individual’s brain activity by integrating their own neuroimaging data with local biophysical models. Here, we give a detailed description of the TVB modeling process and explore model parameters associated with stroke. In order to establish a parallel between this new type of modeling and those currently in use, in this work we establish an association between a specific TVB parameter (long-range coupling) that increases after stroke with metrics derived from graph analysis. We used TVB to simulate the individual BOLD signals for 20 patients with stroke and 10 healthy controls. We performed graph analysis on their structural connectivity matrices calculating degree centrality, betweenness centrality, and global efficiency. Linear regression analysis demonstrated that long-range coupling is negatively correlated with global efficiency (P = 0.038), but is not correlated with degree centrality or betweenness centrality. Our results suggest that the larger influence of local dynamics seen through the long-range coupling parameter is closely associated with a decreased efficiency of the system. We thus propose that the increase in the long-range parameter in TVB (indicating a bias toward local over global dynamics) is deleterious because it reduces communication as suggested by the decrease in efficiency. The new model platform TVB hence provides a novel perspective to understanding biophysical parameters responsible for global brain dynamics after stroke, allowing the design of focused therapeutic interventions. PMID:26579071

Enzyme specificity under dynamic control

NASA Astrophysics Data System (ADS)

Ota, Nobuyuki; Agard, David A.

2002-03-01

The contributions of conformational dynamics to substrate specificity have been examined by the application of principal component analysis to molecular dynamics trajectories of alpha-lytic protease. The wild-type alpha-lytic protease is highly specific for substrates with small hydrophobic side chains at the specificity pocket, while the Met190Ala binding pocket mutant has a much broader specificity, actively hydrolyzing substrates ranging from Ala to Phe. We performed a principal component analysis using 1-nanosecond molecular dynamics simulations using solvent boundary condition. We found that the walls of the wild-type substrate binding pocket move in tandem with one another, causing the pocket size to remain fixed so that only small substrates are recognized. In contrast, the M190A mutant shows uncoupled movement of the binding pocket walls, allowing the pocket to sample both smaller and larger sizes, which appears to be the cause of the observed broad specificity. The results suggest that the protein dynamics of alpha-lytic protease may play a significant role in defining the patterns of substrate specificity.

Binding stability of peptides on major histocompatibility complex class I proteins: role of entropy and dynamics.

PubMed

Gul, Ahmet; Erman, Burak

2018-01-16

Prediction of peptide binding on specific human leukocyte antigens (HLA) has long been studied with successful results. We herein describe the effects of entropy and dynamics by investigating the binding stabilities of 10 nanopeptides on various HLA Class I alleles using a theoretical model based on molecular dynamics simulations. The fluctuational entropies of the peptides are estimated over a temperature range of 310-460 K. The estimated entropies correlate well with experimental binding affinities of the peptides: peptides that have higher binding affinities have lower entropies compared to non-binders, which have significantly larger entropies. The computation of the entropies is based on a simple model that requires short molecular dynamics trajectories and allows for approximate but rapid determination. The paper draws attention to the long neglected dynamic aspects of peptide binding, and provides a fast computation scheme that allows for rapid scanning of large numbers of peptides on selected HLA antigens, which may be useful in defining the right peptides for personal immunotherapy.

Molecular dynamics at low time resolution.

PubMed

Faccioli, P

2010-10-28

The internal dynamics of macromolecular systems is characterized by widely separated time scales, ranging from fraction of picoseconds to nanoseconds. In ordinary molecular dynamics simulations, the elementary time step Δt used to integrate the equation of motion needs to be chosen much smaller of the shortest time scale in order not to cut-off physical effects. We show that in systems obeying the overdamped Langevin equation, it is possible to systematically correct for such discretization errors. This is done by analytically averaging out the fast molecular dynamics which occurs at time scales smaller than Δt, using a renormalization group based technique. Such a procedure gives raise to a time-dependent calculable correction to the diffusion coefficient. The resulting effective Langevin equation describes by construction the same long-time dynamics, but has a lower time resolution power, hence it can be integrated using larger time steps Δt. We illustrate and validate this method by studying the diffusion of a point-particle in a one-dimensional toy model and the denaturation of a protein.

Binding stability of peptides on major histocompatibility complex class I proteins: role of entropy and dynamics

NASA Astrophysics Data System (ADS)

Gul, Ahmet; Erman, Burak

2018-03-01

Prediction of peptide binding on specific human leukocyte antigens (HLA) has long been studied with successful results. We herein describe the effects of entropy and dynamics by investigating the binding stabilities of 10 nanopeptides on various HLA Class I alleles using a theoretical model based on molecular dynamics simulations. The fluctuational entropies of the peptides are estimated over a temperature range of 310-460 K. The estimated entropies correlate well with experimental binding affinities of the peptides: peptides that have higher binding affinities have lower entropies compared to non-binders, which have significantly larger entropies. The computation of the entropies is based on a simple model that requires short molecular dynamics trajectories and allows for approximate but rapid determination. The paper draws attention to the long neglected dynamic aspects of peptide binding, and provides a fast computation scheme that allows for rapid scanning of large numbers of peptides on selected HLA antigens, which may be useful in defining the right peptides for personal immunotherapy.

Dynamical Constraints on the Dark Matter Distribution of the Sculptor Dwarf Spheroidal from Stellar Proper Motions

NASA Astrophysics Data System (ADS)

Strigari, Louis E.; Frenk, Carlos S.; White, Simon D. M.

2018-06-01

We compare the transverse velocity dispersions recently measured within the Sculptor dwarf spheroidal galaxy to the predictions of our previously published dynamical model. This was designed to fit the observed number count and velocity dispersion profiles of both metal-rich and metal-poor stars, both in cored and in cusped potentials. At the projected radius where the proper motions (PMs) were measured, this model (with no change in parameters) predicts transverse dispersions in the range of 6–9.5 km s‑1, with the tangential dispersion about 1 km s‑1 larger than the (projected) radial dispersion. Both dispersions are predicted to be about 1 km s‑1 larger for metal-poor than for metal-rich stars. At this projected radius, cored and cusped potentials predict almost identical transverse dispersions. The measured tangential dispersion (8.5 ± 3.2 km s‑1) agrees remarkably well with these predictions, while the measured radial dispersion (11.5 ± 4.3 km s‑1) differs only at about the 1σ level. Thus, the PM data are in excellent agreement with previous data, but do not help to distinguish between cored and cusped potentials. This will require velocity dispersion data (either from PMs or from radial velocities) with uncertainties well below 1 km s‑1 over a range of projected radii.

Dynamics of the middle atmosphere as observed by the ARISE project

NASA Astrophysics Data System (ADS)

Blanc, Elisabeth

2015-04-01

The atmosphere is a complex system submitted to disturbances in a wide range of scales, including high frequency sources as volcanoes, thunderstorms, tornadoes and at larger scales, gravity waves from deep convection or wind over mountains, atmospheric tides and planetary waves. These waves affect the different atmospheric layers submitted to different temperature and wind systems which strongly control the general atmospheric circulation. The full description of gravity and planetary waves constitutes a challenge for the development of future models of atmosphere and climate. The objective of this paper is to present a review of recent advances obtained in this topic, especially in the framework of the ARISE (Atmospheric dynamics Research InfraStructure in Europe) project

Linking seasonal home range size with habitat selection and movement in a mountain ungulate.

PubMed

Viana, Duarte S; Granados, José Enrique; Fandos, Paulino; Pérez, Jesús M; Cano-Manuel, Francisco Javier; Burón, Daniel; Fandos, Guillermo; Aguado, María Ángeles Párraga; Figuerola, Jordi; Soriguer, Ramón C

2018-01-01

Space use by animals is determined by the interplay between movement and the environment, and is thus mediated by habitat selection, biotic interactions and intrinsic factors of moving individuals. These processes ultimately determine home range size, but their relative contributions and dynamic nature remain less explored. We investigated the role of habitat selection, movement unrelated to habitat selection and intrinsic factors related to sex in driving space use and home range size in Iberian ibex, Capra pyrenaica . We used GPS collars to track ibex across the year in two different geographical areas of Sierra Nevada, Spain, and measured habitat variables related to forage and roost availability. By using integrated step selection analysis (iSSA), we show that habitat selection was important to explain space use by ibex. As a consequence, movement was constrained by habitat selection, as observed displacement rate was shorter than expected under null selection. Selection-independent movement, selection strength and resource availability were important drivers of seasonal home range size. Both displacement rate and directional persistence had a positive relationship with home range size while accounting for habitat selection, suggesting that individual characteristics and state may also affect home range size. Ibex living at higher altitudes, where resource availability shows stronger altitudinal gradients across the year, had larger home ranges. Home range size was larger in spring and autumn, when ibex ascend and descend back, and smaller in summer and winter, when resources are more stable. Therefore, home range size decreased with resource availability. Finally, males had larger home ranges than females, which might be explained by differences in body size and reproductive behaviour. Movement, selection strength, resource availability and intrinsic factors related to sex determined home range size of Iberian ibex. Our results highlight the need to integrate and account for process dependencies, here the interdependence of movement and habitat selection, to understand how animals use space. This study contributes to understand how movement links environmental and geographical space use and determines home range behaviour in large herbivores.

Two non linear dynamics plasma astrophysics experiments at LANL

NASA Astrophysics Data System (ADS)

Intrator, T. P.; Weber, T. E.; Feng, Y.; Sears, J. A.; Swan, H.; Hutchinson, T.; Boguski, J.; Gao, K.; Chapdelaine, L.; Dunn, J.

2013-10-01

Two laboratory experiments at Los Alamos National Laboratory (LANL) have been built to gain access to a wide range of fundamental plasma physics issues germane astro, space, and fusion plasmas. The over arching theme is magnetized plasma dynamics that include currents, MHD forces and instabilities, sheared flows and shocks, creation and annihilation of magnetic field. The Reconnection Scaling Experiment (RSX) creates current sheets and flux ropes that exhibit fully 3D dynamics, that can kink, bounce, merge and reconnect, shred, and reform in complicated ways. The most recent movies from a large detailed data set describe the 3D magnetic structure and helicity budget of a driven and dissipative system that spontaneously self saturates a kink instability. The Magnetized Shock Experiment (MSX) uses a Field reversed configuration (FRC) that is ejected at high speed and then stagnated onto a stopping mirror field, which drives a collisionless magnetized shock. A plasmoid accelerator will also access super critical shocks at much larger Alfven Mach numbers. Unique features include access to parallel, oblique and perpendicular shocks, in regions much larger than ion gyro radius and inertial length, large magnetic and fluid Reynolds numbers, and volume for turbulence. Center for Magnetic Self Organization, NASA Geospace NNHIOA044I-Basic, Department of Energy DE-AC52-06NA25369.

Salinity effects on the dynamics and patterns of desiccation cracks

NASA Astrophysics Data System (ADS)

Shokri, N.; Zhou, P.

2012-12-01

Cracking arising from desiccation is a ubiquitous phenomenon encountered in various industrial and geo-environmental applications including drying of clayey soil, cement, ceramics, gels, and many more colloidal suspensions. Presence of cracks in muddy sediments modifies the characteristics of the medium such as pore structure, porosity, and permeability which in turn influence various flow and transport processes. Thus it remains a topic of great interest in many disciplines to describe the dynamics of desiccation cracking under various boundary conditions. To this end, we conducted a comprehensive study to investigate effects of NaCl concentrations on cracking dynamics and patterns during desiccation of Bentonite. Mixtures of Bentonite and NaCl solutions were prepared with NaCl concentration varying from 2 to 10 percent in 0.5 percent increment (totally 17 configurations). The slurry was placed in a Petri dish mounted on a digital balance to record the evaporation dynamics. The atmospheric conditions were kept constant using an environmental chamber. An automatic camera was used to record the dynamics of macro-cracks (mm scale) at the surface of desiccating clay each minute. The obtained results illustrate the significant effects of salt concentration on the initiation, propagation, morphology and general dynamics of macro-cracks. We found that higher salt concentrations results in larger macro cracks' lengths attributed to the effects of NaCl on compressing the electric double layer of particles at increasing electrolyte concentrations which reduce considerably the repulsive forces among the particles and causing instability of the slurry and flocculation of the colloidal particles. Rheological measurements by means of a stress controlled rheometer revealed that the yield stress of the slurry decreases as NaCl concentration increases which may indicate aggregation of larger units in the slurry as a result of flocculation causing larger cracks' lengths due to drying. At the end of each round of the experiment, a detailed visualization was conducted using Scanning Electron Microscopy to investigate the patterns and morphology of cracks at micro-scale as influenced by the salt concentration. Our results provide new insights and finding about the effects of salt concentrations on desiccation cracks at different scales ranging from a few mm to few microns.

A financial network perspective of financial institutions' systemic risk contributions

NASA Astrophysics Data System (ADS)

Huang, Wei-Qiang; Zhuang, Xin-Tian; Yao, Shuang; Uryasev, Stan

2016-08-01

This study considers the effects of the financial institutions' local topology structure in the financial network on their systemic risk contribution using data from the Chinese stock market. We first measure the systemic risk contribution with the Conditional Value-at-Risk (CoVaR) which is estimated by applying dynamic conditional correlation multivariate GARCH model (DCC-MVGARCH). Financial networks are constructed from dynamic conditional correlations (DCC) with graph filtering method of minimum spanning trees (MSTs). Then we investigate dynamics of systemic risk contributions of financial institution. Also we study dynamics of financial institution's local topology structure in the financial network. Finally, we analyze the quantitative relationships between the local topology structure and systemic risk contribution with panel data regression analysis. We find that financial institutions with greater node strength, larger node betweenness centrality, larger node closeness centrality and larger node clustering coefficient tend to be associated with larger systemic risk contributions.

The fluid dynamics of microjet explosions caused by extremely intense X-ray pulses

NASA Astrophysics Data System (ADS)

Stan, Claudiu; Laksmono, Hartawan; Sierra, Raymond; Milathianaki, Despina; Koglin, Jason; Messerschmidt, Marc; Williams, Garth; Demirci, Hasan; Botha, Sabine; Nass, Karol; Stone, Howard; Schlichting, Ilme; Shoeman, Robert; Boutet, Sebastien

2014-11-01

Femtosecond X-ray scattering experiments at free-electron laser facilities typically requires liquid jet delivery methods to bring samples to the region of interaction with X-rays. We have imaged optically the damage process in water microjets due to intense hard X-ray pulses at the Linac Coherent Light Source (LCLS), using time-resolved imaging techniques to record movies at rates up to half a billion frames per second. For pulse energies larger than a few percent of the maximum pulse energy available at LCLS, the X-rays deposit energies much larger than the latent heat of vaporization in water, and induce a phase explosion that opens a gap in the jet. The LCLS pulses last a few tens of femtoseconds, but the full evolution of the broken jet is orders of magnitude slower - typically in the microsecond range - due to complex fluid dynamics processes triggered by the phase explosion. Although the explosion results in a complex sequence of phenomena, they lead to an approximately self-similar flow of the liquid in the jet.

Collective behavior of bulk nanobubbles produced by alternating polarity electrolysis.

PubMed

Postnikov, Alexander V; Uvarov, Ilia V; Penkov, Nikita V; Svetovoy, Vitaly B

2017-12-21

Nanobubbles in liquids are mysterious gaseous objects with exceptional stability. They promise a wide range of applications, but their production is not well controlled and localized. Alternating polarity electrolysis of water is a tool that can control the production of bulk nanobubbles in space and time without generating larger bubbles. Using the schlieren technique, the detailed three-dimensional structure of a dense cloud of nanobubbles above the electrodes is visualized. It is demonstrated that the thermal effects produce a different schlieren pattern and have different dynamics. A localized volume enriched with nanobubbles can be separated from the parent cloud and exists on its own. This volume demonstrates buoyancy, from which the concentration of nanobubbles is estimated as 2 × 10 18 m -3 . This concentration is smaller than that in the parent cloud. Dynamic light scattering shows that the average size of nanobubbles during the process is 60-80 nm. The bubbles are observed 15 minutes after switching off the electrical pulses but their size is shifted to larger values of about 250 nm. Thus, an efficient way to generate and control nanobubbles is proposed.

Robustness and Vulnerability of Networks with Dynamical Dependency Groups.

PubMed

Bai, Ya-Nan; Huang, Ning; Wang, Lei; Wu, Zhi-Xi

2016-11-28

The dependency property and self-recovery of failure nodes both have great effects on the robustness of networks during the cascading process. Existing investigations focused mainly on the failure mechanism of static dependency groups without considering the time-dependency of interdependent nodes and the recovery mechanism in reality. In this study, we present an evolving network model consisting of failure mechanisms and a recovery mechanism to explore network robustness, where the dependency relations among nodes vary over time. Based on generating function techniques, we provide an analytical framework for random networks with arbitrary degree distribution. In particular, we theoretically find that an abrupt percolation transition exists corresponding to the dynamical dependency groups for a wide range of topologies after initial random removal. Moreover, when the abrupt transition point is above the failure threshold of dependency groups, the evolving network with the larger dependency groups is more vulnerable; when below it, the larger dependency groups make the network more robust. Numerical simulations employing the Erdős-Rényi network and Barabási-Albert scale free network are performed to validate our theoretical results.

High dynamic range pixel architecture for advanced diagnostic medical x-ray imaging applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izadi, Mohammad Hadi; Karim, Karim S.

2006-05-15

The most widely used architecture in large-area amorphous silicon (a-Si) flat panel imagers is a passive pixel sensor (PPS), which consists of a detector and a readout switch. While the PPS has the advantage of being compact and amenable toward high-resolution imaging, small PPS output signals are swamped by external column charge amplifier and data line thermal noise, which reduce the minimum readable sensor input signal. In contrast to PPS circuits, on-pixel amplifiers in a-Si technology reduce readout noise to levels that can meet even the stringent requirements for low noise digital x-ray fluoroscopy (<1000 noise electrons). However, larger voltagesmore » at the pixel input cause the output of the amplified pixel to become nonlinear thus reducing the dynamic range. We reported a hybrid amplified pixel architecture based on a combination of PPS and amplified pixel designs that, in addition to low noise performance, also resulted in large-signal linearity and consequently higher dynamic range [K. S. Karim et al., Proc. SPIE 5368, 657 (2004)]. The additional benefit in large-signal linearity, however, came at the cost of an additional pixel transistor. We present an amplified pixel design that achieves the goals of low noise performance and large-signal linearity without the need for an additional pixel transistor. Theoretical calculations and simulation results for noise indicate the applicability of the amplified a-Si pixel architecture for high dynamic range, medical x-ray imaging applications that require switching between low exposure, real-time fluoroscopy and high-exposure radiography.« less

Quasielastic neutron scattering study of water confined in carbon nanopores

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chathoth, S. M.; Mamontov, E.; Kolesnikov, A. I.

2011-07-26

Microscopic dynamics of water confined in nanometer and sub-nanometer pores of carbide-derived carbon (CDC) were investigated using quasielastic neutron scattering (QENS). The temperature dependence of the average relaxation time, ‹τ›, exhibits super-Arrhenius behavior that could be described by Vogel-Fulcher-Tammann (VFT) law in the range from 250 K to 190 K; below this temperature, ‹τ› follows Arrhenius temperature dependence. The temperature of the dynamic crossover between the two regimes in water confined in the CDC pores is similar to that observed for water in hydrophobic confinement of the larger size, such as 14 Å ordered mesoporous carbon (CMK) and 16 Åmore » double-wall carbon nanotubes. Thus, the dynamical behavior of water remains qualitatively unchanged even in the very small hydrophobic pores.« less

Dynamics of Conduit Flow and Fragmentation of Trachytic Versus Rhyolitic Eruptions

NASA Astrophysics Data System (ADS)

Papale, P.; Giordano, D.; del Seppia, D.; Romano, C.; Dingwell, D. B.

We have performed a systematic investigation of the dynamics of ascent and fragmen- tation of trachitic magmas from Phlegrean Fields, and have compared such dynamics with those of the more common and more thoroughly investigated rhyolitic eruptions. The investigation involved experimental as well as numerical studies. Knowledge of the viscosity of trachytic magmas is crucial, since viscosity is one of the most im- portant controlling factors in magma ascent dynamics. We have performed a series of measurements of the dry and hydrous viscosity of trachytic liquids representative of the glassy portion of pumice from the Campanian Ignimbrite, Agnano Monte Spina, and Monte Nuovo eruptions of Phlegrean Fields, spanning a time interval from 36,000 BP to 1538 AD, and an intensity range of about 4 orders of magnitude. The results show that for water contents larger than 1-2 wt% trachytic viscosities are within one order of magnitude less than rhyolitic viscosities. On the contrary, the calculated sol- ubility of water in trachytic liquids is significantly higher than in rhyolitic liquids. We have simulated the steady, multiphase flow of gas and liquid magma, or pyro- clasts above fragmentation, for trachytic and rhyolitic compositions, by parameteris- ing quantities like the total water content and the conduit size. All else being equal, the higher water solubility of trachytes and substantially similar liquid viscosity with respect to rhyolites yields a lower mixture viscosity and lower pressure gradient in the deep conduit region for the former magma type. This results in the achievement of fragmentation conditions, calculated as the condition at which the strain rate in magma becomes too large to be supported by viscous flow, which are hundreds to thousands of meters higher in the conduit for trachytes than for rhyolites. The fragmentation vesic- ularity of trachytes is also systematically larger than that of rhyolites, still remaining in the 0.6 U 0.85 range which is typical of pumice from magmatic eruptions through- out the world. In spite of such large differences in the internal conduit dynamics, the conduit exit conditions are remarkably similar for the two magma types (all other conditions being equal), according to the similar large scale features of rhyolitic and trachytic explosive eruptions. Finally, despite the lower magma viscosity of trachytes with respect to rhyolites, the delayed fragmentation and longer high-viscosity bubbly flow region of the former can result in larger overall mechanical energy dissipation by viscous forces, and lower mass flow rates for trachitic than for rhyolitic eruptions.

Heterogeneous distributional responses to climate warming: evidence from rodents along a subtropical elevational gradient.

PubMed

Wen, Zhixin; Wu, Yi; Ge, Deyan; Cheng, Jilong; Chang, Yongbin; Yang, Zhisong; Xia, Lin; Yang, Qisen

2017-04-20

Understanding whether species' elevational range is shifting in response to directional changes in climate and whether there is a predictable pattern in that response is one of the major challenges in ecology. However, so far very little is known about the distributional responses of subtropical species to climate change, especially for small mammals. In this study, we examined the elevational range shifts at three range points (upper and lower range limits and abundance-weighted range centre) of rodents over a 30-year period (1986 to 2014-2015), in a subtropical forest of Southwest China. We also examined the influences of four ecological traits (body mass, habitat breadth, diet and daily activity pattern) on the upslope shifts in species' abundance-weighted range centres. Despite the warming trend between 1986 and 2015, the 11 rodent species in analysis displayed heterogeneous dynamics at each of the three range points. Species which have larger body sizes and narrower habitat breadths, show both diurnal and nocturnal activities and more specialized dietary requirements, are more likely to exhibit upslope shifts in abundance-weighted range centres. Species' distributional responses can be heterogeneous even though there are directional changes in climate. Our study indicates that climate-induced alleviation of competition and lag in response may potentially drive species' range shift, which may not conform to the expectation from climate change. Difference in traits can lead to different range dynamics. Our study also illustrates the merit of multi-faceted assessment in studying elevational range shifts.

Seismically damaged regolith as self-organized fragile geological feature

NASA Astrophysics Data System (ADS)

Sleep, Norman H.

2011-12-01

The S-wave velocity in the shallow subsurface within seismically active regions self-organizes so that typical strong dynamic shear stresses marginally exceed the Coulomb elastic limit. The dynamic velocity from major strike-slip faults yields simple dimensional relations. The near-field velocity pulse is essentially a Love wave. The dynamic shear strain is the ratio of the measured particle velocity over the deep S-wave velocity. The shallow dynamic shear stress is this quantity times the local shear modulus. The dynamic shear traction on fault parallel vertical planes is finite at the free surface. Coulomb failure occurs on favorably oriented fractures and internally in intact rock. I obtain the equilibrium shear modulus by starting a sequence of earthquakes with intact stiff rock extending all the way to the surface. The imposed dynamic shear strain in stiff rock causes Coulomb failure at shallow depths and leaves cracks in it wake. Cracked rock is more compliant than the original intact rock. Cracked rock is also weaker in friction, but shear modulus changes have a larger effect. Each subsequent event causes additional shallow cracking until the rock becomes compliant enough that it just reaches Coulomb failure over a shallow depth range of tens to hundreds of meters. Further events maintain the material at the shear modulus as a function where it just fails. The formalism provided in the paper yields reasonable representation of the S-wave velocity in exhumed sediments near Cajon Pass and the San Fernando Valley of California. A general conclusion is that shallow rocks in seismically active areas just become nonlinear during typical shaking. This process causes transient changes in S-wave velocity, but not strong nonlinear attenuation of seismic waves. Wave amplitudes significantly larger than typical ones would strongly attenuate and strongly damage the rock.

Nanojets: Electrification, Energetics, Dynamics, Stability and Breakup

DTIC Science & Technology

2006-12-31

OF: 17. LIMITATION OF 18 . NUMBER 19a. NAME OF RESPONSIBLE PERSON a. REPORT b. ABSTRACT c. THIS PAGE ABSTRACT OF Dr Uzi Landman PAGES SU 19b. TELEPHONE...F(Ei )dE,. = Fm,, (Ero, )F,,h (Er,,b)dEro, dEwbh. (8) 16 where F,.ot( Erot ), and Fvwb(Evib) are the normalized rotational and vibrational Maxwell...corresponding to the concentrated solution, while the jet 18 dimensions are associated with radii in the range between 2.3 and 3.29 nm, with the larger

Home range size of Tengmalm's owl during breeding in Central Europe is determined by prey abundance.

PubMed

Kouba, Marek; Bartoš, Luděk; Tomášek, Václav; Popelková, Alena; Šťastný, Karel; Zárybnická, Markéta

2017-01-01

Animal home ranges typically characterized by their size, shape and a given time interval can be affected by many different biotic and abiotic factors. However, despite the fact that many studies have addressed home ranges, our knowledge of the factors influencing the size of area occupied by different animals is, in many cases, still quite poor, especially among raptors. Using radio-telemetry (VHF; 2.1 g tail-mounted tags) we studied movements of 20 Tengmalm's owl (Aegolius funereus) males during the breeding season in a mountain area of Central Europe (the Czech Republic, the Ore Mountains: 50° 40' N, 13° 35' E) between years 2006-2010, determined their average hunting home range size and explored what factors affected the size of home range utilised. The mean breeding home range size calculated according to 95% fixed kernel density estimator was 190.7 ± 65.7 ha (± SD) with a median value of 187.1 ha. Home range size was affected by prey abundance, presence or absence of polygyny, the number of fledglings, and weather conditions. Home range size increased with decreasing prey abundance. Polygynously mated males had overall larger home range than those mated monogamously, and individuals with more fledged young possessed larger home range compared to those with fewer raised fledglings. Finally, we found that home ranges recorded during harsh weather (nights with strong wind speed and/or heavy rain) were smaller in size than those registered during better weather. Overall, the results provide novel insights into what factors may influence home range size and emphasize the prey abundance as a key factor for breeding dynamics in Tengmalm's owl.

Ballistic tongue projection in a miniaturized salamander.

PubMed

Deban, Stephen M; Bloom, Segall V

2018-05-20

Miniaturization of body size is often accompanied by peculiarities in morphology that can have functional consequences. We examined the feeding behavior and morphology of the miniaturized plethodontid salamander Thorius, one of the smallest vertebrates, to determine if its performance and biomechanics differ from those of its larger relatives. High-speed imaging and dynamics analysis of feeding at a range of temperatures show that tongue projection in Thorius macdougalli is ballistic and achieves accelerations of up to 600 G with low thermal sensitivity, indicating that tongue projection is powered by an elastic-recoil mechanism. Preceding ballistic projection is an unusual preparatory phase of tongue protrusion, which, like tongue retraction, shows lower performance and higher thermal sensitivity that are indicative of movement being powered directly by muscle shortening. The variability of tongue-projection kinematics and dynamics is comparable to larger ballistic-tongued plethodontids and reveals that Thorius is capable of modulating its tongue movements in response to prey distance. Morphological examination revealed that T. macdougalli possesses a reduced number of myofibers in the tongue muscles, a large projector muscle mass relative to tongue mass, and an unusual folding of the tongue skeleton, compared with larger relatives. Nonetheless, T. macdougalli retains the elaborated collagen aponeuroses in the projector muscle that store elastic energy and a tongue skeleton that is free of direct myofiber insertion, two features that appear to be essential for ballistic tongue projection in salamanders. © 2018 Wiley Periodicals, Inc.

Numerical modeling of the wind flow over a transverse dune

PubMed Central

Araújo, Ascânio D.; Parteli, Eric J. R.; Pöschel, Thorsten; Andrade, José S.; Herrmann, Hans J.

2013-01-01

Transverse dunes, which form under unidirectional winds and have fixed profile in the direction perpendicular to the wind, occur on all celestial objects of our solar system where dunes have been detected. Here we perform a numerical study of the average turbulent wind flow over a transverse dune by means of computational fluid dynamics simulations. We find that the length of the zone of recirculating flow at the dune lee — the separation bubble — displays a surprisingly strong dependence on the wind shear velocity, u*: it is nearly independent of u* for shear velocities within the range between 0.2 m/s and 0.8 m/s but increases linearly with u* for larger shear velocities. Our calculations show that transport in the direction opposite to dune migration within the separation bubble can be sustained if u* is larger than approximately 0.39 m/s, whereas a larger value of u* (about 0.49 m/s) is required to initiate this reverse transport. PMID:24091456

Dynamics of protein and lipid intake regulation of rainbow trout studied with a wide lipid range of encapsulated diets and self-feeders.

PubMed

Forsman, Antti; Ruohonen, Kari

2009-01-08

Feed intake in fish is examined extensively but there is not much information about the dynamics of regulation i.e. how fish react to different diets, and how these reactions change, over a longer period of time. The present study was designed to evaluate the dynamics of food intake regulation in rainbow trout over a very wide range of dietary protein and lipid levels; from a very low lipid level (5%) to an extremely high level (55%). The study was conducted with three subsequent 40-day blocks of 20 fish and the intake dynamics of the lipid effect were studied by splitting the 40-day experimental period to shorter periods of 10 days. Depending on a diet the rainbow trout were more willing to ingest larger surpluses of both protein and lipid during the periods 0-10, 10-20 and 20-30 days if compared with the anticipated nutritional intake target of rainbow trout. A strong regulatory response against high lipid intake was seen during the last period (days 30-40) leading not only to a decrease in lipid intake but much more drastic decrease in protein intake. Thus, a significant nonlinear interaction between time and dietary protein and lipid was found indicating that the effect of protein and lipid was dynamic.

A Multi-Scale, Integrated Approach to Representing Watershed Systems

NASA Astrophysics Data System (ADS)

Ivanov, Valeriy; Kim, Jongho; Fatichi, Simone; Katopodes, Nikolaos

2014-05-01

Understanding and predicting process dynamics across a range of scales are fundamental challenges for basic hydrologic research and practical applications. This is particularly true when larger-spatial-scale processes, such as surface-subsurface flow and precipitation, need to be translated to fine space-time scale dynamics of processes, such as channel hydraulics and sediment transport, that are often of primary interest. Inferring characteristics of fine-scale processes from uncertain coarse-scale climate projection information poses additional challenges. We have developed an integrated model simulating hydrological processes, flow dynamics, erosion, and sediment transport, tRIBS+VEGGIE-FEaST. The model targets to take the advantage of the current generation of wealth of data representing watershed topography, vegetation, soil, and landuse, as well as to explore the hydrological effects of physical factors and their feedback mechanisms over a range of scales. We illustrate how the modeling system connects precipitation-hydrologic runoff partition process to the dynamics of flow, erosion, and sedimentation, and how the soil's substrate condition can impact the latter processes, resulting in a non-unique response. We further illustrate an approach to using downscaled climate change information with a process-based model to infer the moments of hydrologic variables in future climate conditions and explore the impact of climate information uncertainty.

Role of dynamic capsomere supply for viral capsid self-assembly

NASA Astrophysics Data System (ADS)

Boettcher, Marvin A.; Klein, Heinrich C. R.; Schwarz, Ulrich S.

2015-02-01

Many viruses rely on the self-assembly of their capsids to protect and transport their genomic material. For many viral systems, in particular for human viruses like hepatitis B, adeno or human immunodeficiency virus, that lead to persistent infections, capsomeres are continuously produced in the cytoplasm of the host cell while completed capsids exit the cell for a new round of infection. Here we use coarse-grained Brownian dynamics simulations of a generic patchy particle model to elucidate the role of the dynamic supply of capsomeres for the reversible self-assembly of empty T1 icosahedral virus capsids. We find that for high rates of capsomere influx only a narrow range of bond strengths exists for which a steady state of continuous capsid production is possible. For bond strengths smaller and larger than this optimal value, the reaction volume becomes crowded by small and large intermediates, respectively. For lower rates of capsomere influx a broader range of bond strengths exists for which a steady state of continuous capsid production is established, although now the production rate of capsids is smaller. Thus our simulations suggest that the importance of an optimal bond strength for viral capsid assembly typical for in vitro conditions can be reduced by the dynamic influx of capsomeres in a cellular environment.

A study of the adequacy of quasi-geostrophic dynamics for modeling the effect of frontal cyclones on the larger scale flow

NASA Technical Reports Server (NTRS)

Mudrick, S.

1985-01-01

The validity of quasi-geostrophic (QG) dynamics were tested on compared to primitive equation (PE) dynamics, for modeling the effect of cyclone waves on the larger scale flow. The formation of frontal cyclones and the dynamics of occluded frontogenesis were studied. Surface friction runs with the PE model and the wavelength of maximum instability is described. Also fine resolution PE simulation of a polar low is described.

Computational Models Predict Larger Muscle Tissue Strains at Faster Sprinting Speeds

PubMed Central

Fiorentino, Niccolo M; Rehorn, Michael R; Chumanov, Elizabeth S; Thelen, Darryl G; Blemker, Silvia S

2014-01-01

Introduction: Proximal biceps femoris musculotendon strain injury has been well established as a common injury among athletes participating in sports that require sprinting near or at maximum speed; however, little is known about the mechanisms that make this muscle tissue more susceptible to injury at faster speeds. Purpose: Quantify localized tissue strain during sprinting at a range of speeds. Methods: Biceps femoris long head (BFlh) musculotendon dimensions of 14 athletes were measured on magnetic resonance (MR) images and used to generate a finite element computational model. The model was first validated through comparison with previous dynamic MR experiments. After validation, muscle activation and muscle-tendon unit length change were derived from forward dynamic simulations of sprinting at 70%, 85% and 100% maximum speed and used as input to the computational model simulations. Simulations ran from mid-swing to foot contact. Results: The model predictions of local muscle tissue strain magnitude compared favorably with in vivo tissue strain measurements determined from dynamic MR experiments of the BFlh. For simulations of sprinting, local fiber strain was non-uniform at all speeds, with the highest muscle tissue strain where injury is often observed (proximal myotendinous junction). At faster sprinting speeds, increases were observed in fiber strain non-uniformity and peak local fiber strain (0.56, 0.67 and 0.72, for sprinting at 70%, 85% and 100% maximum speed). A histogram of local fiber strains showed that more of the BFlh reached larger local fiber strains at faster speeds. Conclusions: At faster sprinting speeds, peak local fiber strain, fiber strain non-uniformity and the amount of muscle undergoing larger strains are predicted to increase, likely contributing to the BFlh muscle’s higher injury susceptibility at faster speeds. PMID:24145724

Using superconducting undulator for enhanced imaging capabilities of MaRIE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yampolsky, Nikolai

MaRIE x-ray free electron laser (FEL) is envisioned to deliver a burst of closely spaced in time pulses for enabling the capability of studying the dynamic processes in a sample. MaRIE capability can be largely enhanced using the superconducting undulator, which has the capability of doubling its period. This technology will allow reaching the photon energy as low as ~200-500 eV. As a result, the MaRIE facility will have a broader photon energy range enabling a larger variety of experiments. The soft x-ray capability is more likely to achieve the 3D imaging of dynamic processes in noncrystal materials than themore » hard x-ray capability alone.« less

Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamics

PubMed Central

Goldbogen, Jeremy A.

2017-01-01

Vertebrates have evolved to gigantic sizes repeatedly over the past 250 Myr, reaching their extreme in today's baleen whales (Mysticeti). Hypotheses for the evolution of exceptionally large size in mysticetes range from niche partitioning to predator avoidance, but there has been no quantitative examination of body size evolutionary dynamics in this clade and it remains unclear when, why or how gigantism evolved. By fitting phylogenetic macroevolutionary models to a dataset consisting of living and extinct species, we show that mysticetes underwent a clade-wide shift in their mode of body size evolution during the Plio-Pleistocene. This transition, from Brownian motion-like dynamics to a trended random walk towards larger size, is temporally linked to the onset of seasonally intensified upwelling along coastal ecosystems. High prey densities resulting from wind-driven upwelling, rather than abundant resources alone, are the primary determinant of efficient foraging in extant mysticetes and Late Pliocene changes in ocean dynamics may have provided an ecological pathway to gigantism in multiple independent lineages. PMID:28539520

The counterbend dynamics of cross-linked filament bundles and flagella

PubMed Central

Coy, Rachel

2017-01-01

Cross-linked filament bundles, such as in cilia and flagella, are ubiquitous in biology. They are considered in textbooks as simple filaments with larger stiffness. Recent observations of flagellar counterbend, however, show that induction of curvature in one section of a passive flagellum instigates a compensatory counter-curvature elsewhere, exposing the intricate role of the diminutive cross-linking proteins at large scales. We show that this effect, a material property of the cross-linking mechanics, modifies the bundle dynamics and induces a bimodal L2 − L3 length-dependent material response that departs from the Euler–Bernoulli theory. Hence, the use of simpler theories to analyse experiments can result in paradoxical interpretations. Remarkably, the counterbend dynamics instigates counter-waves in opposition to driven oscillations in distant parts of the bundle, with potential impact on the regulation of flagellar bending waves. These results have a range of physical and biological applications, including the empirical disentanglement of material quantities via counterbend dynamics. PMID:28566516

Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamics.

PubMed

Slater, Graham J; Goldbogen, Jeremy A; Pyenson, Nicholas D

2017-05-31

Vertebrates have evolved to gigantic sizes repeatedly over the past 250 Myr, reaching their extreme in today's baleen whales (Mysticeti). Hypotheses for the evolution of exceptionally large size in mysticetes range from niche partitioning to predator avoidance, but there has been no quantitative examination of body size evolutionary dynamics in this clade and it remains unclear when, why or how gigantism evolved. By fitting phylogenetic macroevolutionary models to a dataset consisting of living and extinct species, we show that mysticetes underwent a clade-wide shift in their mode of body size evolution during the Plio-Pleistocene. This transition, from Brownian motion-like dynamics to a trended random walk towards larger size, is temporally linked to the onset of seasonally intensified upwelling along coastal ecosystems. High prey densities resulting from wind-driven upwelling, rather than abundant resources alone, are the primary determinant of efficient foraging in extant mysticetes and Late Pliocene changes in ocean dynamics may have provided an ecological pathway to gigantism in multiple independent lineages. © 2017 The Author(s).

Fine-scale assessment of home ranges and activity patterns for resident black vultures (Coragyps atratus) and turkey vultures (Cathartes aura)

DOE PAGES

Holland, Amanda E.; Byrne, Michael E.; Bryan, A. Lawrence; ...

2017-07-05

Knowledge of black vulture (Coragyps atratus) and turkey vulture (Cathartes aura) spatial ecology is surprisingly limited despite their vital ecological roles. Fine-scale assessments of space use patterns and resource selection are particularly lacking, although development of tracking technologies has allowed data collection at finer temporal and spatial resolution. The objectives of this study were to conduct the first assessment of monthly home range and core area sizes of resident black and turkey vultures with consideration to sex, as well as elucidate differences in monthly, seasonal, and annual activity patterns based on fine-scale movement data analyses. We collected 2.8-million locations formore » 9 black and 9 turkey vultures from June 2013 –August 2015 using solar-powered GSM/GPS transmitters. We quantified home ranges and core areas using the dynamic Brownian bridge movement model and evaluated differences as a function of species, sex, and month. Mean monthly home ranges for turkey vultures were ~50% larger than those of black vultures, although mean core area sizes did not differ between species. Turkey vulture home ranges varied little across months, with exception to a notable reduction in space-use in May, which corresponds with timing of chick-rearing activities. Black vulture home ranges and core areas as well as turkey vulture core areas were larger in breeding season months (January–April). Comparison of space use between male and female vultures was only possible for black vultures, and space use was only slightly larger for females during breeding months (February–May). Analysis of activity patterns revealed turkey vultures spend more time in flight and switch motion states (between flight and stationary) more frequently than black vultures across temporal scales. Our study reveals substantive variability in space use and activity rates between sympatric black and turkey vultures, providing insights into potential behavioral mechanisms contributing to niche differentiation between these species.« less

Fine-scale assessment of home ranges and activity patterns for resident black vultures (Coragyps atratus) and turkey vultures (Cathartes aura)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holland, Amanda E.; Byrne, Michael E.; Bryan, A. Lawrence

Knowledge of black vulture (Coragyps atratus) and turkey vulture (Cathartes aura) spatial ecology is surprisingly limited despite their vital ecological roles. Fine-scale assessments of space use patterns and resource selection are particularly lacking, although development of tracking technologies has allowed data collection at finer temporal and spatial resolution. The objectives of this study were to conduct the first assessment of monthly home range and core area sizes of resident black and turkey vultures with consideration to sex, as well as elucidate differences in monthly, seasonal, and annual activity patterns based on fine-scale movement data analyses. We collected 2.8-million locations formore » 9 black and 9 turkey vultures from June 2013 –August 2015 using solar-powered GSM/GPS transmitters. We quantified home ranges and core areas using the dynamic Brownian bridge movement model and evaluated differences as a function of species, sex, and month. Mean monthly home ranges for turkey vultures were ~50% larger than those of black vultures, although mean core area sizes did not differ between species. Turkey vulture home ranges varied little across months, with exception to a notable reduction in space-use in May, which corresponds with timing of chick-rearing activities. Black vulture home ranges and core areas as well as turkey vulture core areas were larger in breeding season months (January–April). Comparison of space use between male and female vultures was only possible for black vultures, and space use was only slightly larger for females during breeding months (February–May). Analysis of activity patterns revealed turkey vultures spend more time in flight and switch motion states (between flight and stationary) more frequently than black vultures across temporal scales. Our study reveals substantive variability in space use and activity rates between sympatric black and turkey vultures, providing insights into potential behavioral mechanisms contributing to niche differentiation between these species.« less

Decadal Trends and Common Dynamics of the Bio-Optical and Thermal Characteristics of the African Great Lakes

PubMed Central

Loiselle, Steven; Cózar, Andrés; Adgo, Enyew; Ballatore, Thomas; Chavula, Geoffrey; Descy, Jean Pierre; Harper, David M.; Kansiime, Frank; Kimirei, Ismael; Langenberg, Victor; Ma, Ronghua; Sarmento, Hugo; Odada, Eric

2014-01-01

The Great Lakes of East Africa are among the world’s most important freshwater ecosystems. Despite their importance in providing vital resources and ecosystem services, the impact of regional and global environmental drivers on this lacustrine system remains only partially understood. We make a systematic comparison of the dynamics of the bio-optical and thermal properties of thirteen of the largest African lakes between 2002 and 2011. Lake surface temperatures had a positive trend in all Great Lakes outside the latitude of 0° to 8° south, while the dynamics of those lakes within this latitude range were highly sensitive to global inter-annual climate drivers (i.e. El Niño Southern Oscillation). Lake surface temperature dynamics in nearly all lakes were found to be sensitive to the latitudinal position of the Inter Tropical Convergence Zone. Phytoplankton dynamics varied considerably between lakes, with increasing and decreasing trends. Intra-lake differences in both surface temperature and phytoplankton dynamics occurred for many of the larger lakes. This inter-comparison of bio-optical and thermal dynamics provides new insights into the response of these ecosystems to global and regional drivers. PMID:24699528

Computational model of electrically coupled, intrinsically distinct pacemaker neurons.

PubMed

Soto-Treviño, Cristina; Rabbah, Pascale; Marder, Eve; Nadim, Farzan

2005-07-01

Electrical coupling between neurons with similar properties is often studied. Nonetheless, the role of electrical coupling between neurons with widely different intrinsic properties also occurs, but is less well understood. Inspired by the pacemaker group of the crustacean pyloric network, we developed a multicompartment, conductance-based model of a small network of intrinsically distinct, electrically coupled neurons. In the pyloric network, a small intrinsically bursting neuron, through gap junctions, drives 2 larger, tonically spiking neurons to reliably burst in-phase with it. Each model neuron has 2 compartments, one responsible for spike generation and the other for producing a slow, large-amplitude oscillation. We illustrate how these compartments interact and determine the dynamics of the model neurons. Our model captures the dynamic oscillation range measured from the isolated and coupled biological neurons. At the network level, we explore the range of coupling strengths for which synchronous bursting oscillations are possible. The spatial segregation of ionic currents significantly enhances the ability of the 2 neurons to burst synchronously, and the oscillation range of the model pacemaker network depends not only on the strength of the electrical synapse but also on the identity of the neuron receiving inputs. We also compare the activity of the electrically coupled, distinct neurons with that of a network of coupled identical bursting neurons. For small to moderate coupling strengths, the network of identical elements, when receiving asymmetrical inputs, can have a smaller dynamic range of oscillation than that of its constituent neurons in isolation.

Digital holographic microscopy applied to measurement of a flow in a T-shaped micromixer

NASA Astrophysics Data System (ADS)

Ooms, T. A.; Lindken, R.; Westerweel, J.

2009-12-01

In this paper, we describe measurements of a three-dimensional (3D) flow in a T-shaped micromixer by means of digital holographic microscopy. Imaging tracer particles in a microscopic flow with conventional microscopy is accompanied by a small depth-of-field, which hinders true volumetric flow measurements. In holographic microscopy, the depth of the measurement domain does not have this limitation because any desired image plane can be reconstructed after recording. Our digital holographic microscope (DHM) consists of a conventional in-line recording system with an added magnifying optical element. The measured flow velocity and the calculated vorticity illustrate four streamwise vortices in the micromixer outflow channel. Because the investigated flow is stationary and strongly 3D, the DHM performance (i.e. accuracy and resolution) can be precisely investigated. The obtained Dynamic spatial range and Dynamic velocity range are larger than 20 and 30, respectively. High-speed multiple-frame measurements illustrate the capability to simultaneously track about 80 particles in a volumetric measurement domain.

Mapping the spatial and temporal dynamics of the velvet mesquite with MODIS and AVIRIS: Case study at the Santa Rita Experimental Range

NASA Astrophysics Data System (ADS)

Kaurivi, Jorry Zebby Ujama

The general objective of this research is to develop a methodology that will allow mapping and quantifying shrub encroachment with remote sensing. The multitemporal properties of the Moderate Resolution Imaging Spectroradiometer (MODIS) -250m, 16-day vegetation index products were combined with the hyperspectral and high spatial resolution (3.6m) computation of the Airborne Visible-Infrared Imaging Spectrometer (AVIRIS) to detect the dynamics of mesquite and grass/soil matrix at two sites of high (19.5%) and low (5.7%) mesquite cover in the Santa Rita Experimental Range (SRER). MODIS results showed separability between grassland and mesquite based on phenology. Mesquite landscapes had longer green peak starting in April through February, while the grassland only peaked during the monsoon season (July through October). AVIRIS revealed spectral separability, but high variation in the data implicated high heterogeneity in the landscape. Nonetheless, the methodology for larger data was developed in this study and combines ground, air and satellite data.

Plasma Ion Sources for Atmospheric Pressure Ionization Mass Spectrometry.

NASA Astrophysics Data System (ADS)

Zhao, Jian-Guo

1994-01-01

Atmospheric pressure ionization (API) sources using direct-current (DC) and radio-frequency (RF) plasma have been developed in this thesis work. These ion sources can provide stable discharge currents of ~ 1 mA, 2-3 orders of magnitude larger than that of the corona discharge, a widely used API source. The plasmas can be generated and maintained in 1 atm of various buffer gases by applying -500 to -1000 V (DC plasma) or 1-15 W with a frequency of 165 kHz (RF plasma) on the needle electrode. These ion sources have been used with liquid injection to detect various organic compounds of pharmaceutical, biotechnological and environmental interest. Key features of these ion sources include soft ionization with the protonated molecule as the largest peak, and superb sensitivity with detection limits in the low picogram or femtomole range and a linear dynamic range over ~4 orders of magnitude. The RF plasma has advantages over the DC plasma in its ability to operate in various buffer gases and to produce a more stable plasma. Factors influencing the performance of the ion sources have been studied, including RF power level, liquid flow rate, chamber temperature, solvent composition, and voltage affecting the collision induced dissociation (CID). Ionization of hydrocarbons by the RF plasma API source was also studied. Soft ionization is generally produced. To obtain high sensitivity, the ion source must be very dry and the needle-to-orifice distance must be small. Nitric oxide was used to enhance the sensitivity. The RF plasma source was then used for the analysis of hydrocarbons in auto emissions. Comparisons between the corona discharge and the RF plasma have been made in terms of discharge current, ion residence time, and the ion source model. The RF plasma source provides larger linear dynamic range and higher sensitivity than the corona discharge, due to its much larger discharge current. The RF plasma was also observed to provide longer ion residence times and was not limited by space-charge effect as in the corona source.

Solvent-shared pairs of densely charged ions induce intense but short-range supra-additive slowdown of water rotation.

PubMed

Vila Verde, Ana; Santer, Mark; Lipowsky, Reinhard

2016-01-21

The question "Can ions exert supra-additive effects on water dynamics?" has had several opposing answers from both simulation and experiment. We address this ongoing controversy by investigating water reorientation in aqueous solutions of two salts with large (magnesium sulfate) and small (cesium chloride) effects on water dynamics using molecular dynamics simulations and classical, polarizable models. The salt models are reparameterized to reproduce properties of both dilute and concentrated solutions. We demonstrate that water rotation in concentrated MgSO4 solutions is unexpectedly slow, in agreement with experiment, and that the slowdown is supra-additive: the observed slowdown is larger than that predicted by assuming that the resultant of the extra forces induced by the ions on the rotating water molecules tilts the free energy landscape associated with water rotation. Supra-additive slow down is very intense but short-range, and is strongly ion-specific: in contrast to the long-range picture initially proposed based on experiment, we find that intense supra-additivity is limited to water molecules directly bridging two ions in solvent-shared ion pair configuration; in contrast to a non-ion-specific origin to supra-additive effects proposed from simulations, we find that the magnitude of supra-additive slowdown strongly depends on the identity of the cations and anions. Supra-additive slowdown of water dynamics requires long-lived solvent-shared ion pairs; long-lived ion pairs should be typical for salts of multivalent ions. We discuss the origin of the apparent disagreement between the various studies on this topic and show that the short-range cooperative slowdown scenario proposed here resolves the existing controversy.

Electrostatic effects on clustering and ion dynamics in ionomer melts

NASA Astrophysics Data System (ADS)

Ma, Boran; Nguyen, Trung; Pryamitsyn, Victor; Olvera de La Cruz, Monica

An understanding of the relationships between ionomer chain morphology, dynamics and counter-ion mobility is a key factor in the design of ion conducting membranes for battery applications. In this study, we investigate the influence of electrostatic coupling between randomly charged copolymers (ionomers) and counter ions on the structural and dynamic features of a model system of ionomer melts. Using coarse-grained molecular dynamics (CGMD) simulations, we found that variations in electrostatic coupling strength (Γ) remarkably affect the formation of ion-counter ion clusters, ion mobility, and polymer dynamics for a range of charged monomer fractions. Specifically, an increase in Γ leads to larger ionic cluster sizes and reduced polymer and ion mobility. Analysis of the distribution of the radius of gyration of the clusters further reveals that the fractal dimension of the ion clusters is nearly independent from Γ for all the cases studied. Finally, at sufficiently high values of Γ, we observed arrested heterogeneous ions mobility, which is correlated with an increase in ion cluster size. These findings provide insight into the role of electrostatics in governing the nanostructures formed by ionomers.

Structural dynamics of surfaces by ultrafast electron crystallography: experimental and multiple scattering theory.

PubMed

Schäfer, Sascha; Liang, Wenxi; Zewail, Ahmed H

2011-12-07

Recent studies in ultrafast electron crystallography (UEC) using a reflection diffraction geometry have enabled the investigation of a wide range of phenomena on the femtosecond and picosecond time scales. In all these studies, the analysis of the diffraction patterns and their temporal change after excitation was performed within the kinematical scattering theory. In this contribution, we address the question, to what extent dynamical scattering effects have to be included in order to obtain quantitative information about structural dynamics. We discuss different scattering regimes and provide diffraction maps that describe all essential features of scatterings and observables. The effects are quantified by dynamical scattering simulations and examined by direct comparison to the results of ultrafast electron diffraction experiments on an in situ prepared Ni(100) surface, for which structural dynamics can be well described by a two-temperature model. We also report calculations for graphite surfaces. The theoretical framework provided here allows for further UEC studies of surfaces especially at larger penetration depths and for those of heavy-atom materials. © 2011 American Institute of Physics

Size dependence of yield strength simulated by a dislocation-density function dynamics approach

NASA Astrophysics Data System (ADS)

Leung, P. S. S.; Leung, H. S.; Cheng, B.; Ngan, A. H. W.

2015-04-01

The size dependence of the strength of nano- and micron-sized crystals is studied using a new simulation approach in which the dynamics of the density functions of dislocations are modeled. Since any quantity of dislocations can be represented by a density, this approach can handle large systems containing large quantities of dislocations, which may handicap discrete dislocation dynamics schemes due to the excessive computation time involved. For this reason, pillar sizes spanning a large range, from the sub-micron to micron regimes, can be simulated. The simulation results reveal the power-law relationship between strength and specimen size up to a certain size, beyond which the strength varies much more slowly with size. For specimens smaller than ∼4000b, their strength is found to be controlled by the dislocation depletion condition, in which the total dislocation density remains almost constant throughout the loading process. In specimens larger than ∼4000b, the initial dislocation distribution is of critical importance since the presence of dislocation entanglements is found to obstruct deformation in the neighboring regions within a distance of ∼2000b. This length scale suggests that the effects of dense dislocation clusters are greater in intermediate-sized specimens (e.g. 4000b and 8000b) than in larger specimens (e.g. 16 000b), according to the weakest-link concept.

Problems with Excessive Residual Lower Leg Length in Pediatric Amputees

PubMed Central

Osebold, William R; Lester, Edward L; Christenson, Donald M

2001-01-01

We studied six pediatric amputees with long below-knee residual limbs, in order to delineate their functional and prosthetic situations, specifically in relation to problems with fitting for dynamic-response prosthetic feet. Three patients had congenital pseudoarthrosis of the tibia secondary to neurofibromatosis, one had fibular hemimelia, one had a traumatic amputation, and one had amputation secondary to burns. Five patients had Syme's amputations, one had a Boyd amputation. Ages at amputation ranged from nine months to five years (average age 3 years 1 month). After amputation, the long residual below-knee limbs allowed fitting with only the lowest-profile prostheses, such as deflection plates. In three patients, the femoral dome to tibial plafond length was greater on the amputated side than on the normal side. To allow room for more dynamic-response (and larger) foot prostheses, two patients have undergone proximal and distal tibial-fibular epiphyseodeses (one at age 5 years 10 months, the other at 3 years 7 months) and one had a proximal tibial-fibular epiphyseodesis at age 7 years 10 months. (All three patients are still skeletally immature.) The families of two other patients are considering epiphyseodeses, and one patient is not a candidate (skeletally mature). Scanogram data indicate that at skeletal maturity the epiphyseodesed patients will have adequate length distal to their residual limbs to fit larger and more dynamic-response prosthetic feet. PMID:11813953

Dissipative Effects on Inertial-Range Statistics at High Reynolds Numbers.

PubMed

Sinhuber, Michael; Bewley, Gregory P; Bodenschatz, Eberhard

2017-09-29

Using the unique capabilities of the Variable Density Turbulence Tunnel at the Max Planck Institute for Dynamics and Self-Organization, Göttingen, we report experimental measurements in classical grid turbulence that uncover oscillations of the velocity structure functions in the inertial range. This was made possible by measuring extremely long time series of up to 10^{10} samples of the turbulent fluctuating velocity, which corresponds to O(10^{7}) integral length scales. The measurements were conducted in a well-controlled environment at a wide range of high Reynolds numbers from R_{λ}=110 up to R_{λ}=1600, using both traditional hot-wire probes as well as the nanoscale thermal anemometry probe developed at Princeton University. An implication of the observed oscillations is that dissipation influences the inertial-range statistics of turbulent flows at scales significantly larger than predicted by current models and theories.

Impact of deformation on the atomic structures and dynamics of a Cu-Zr metallic glass: A molecular dynamics study

NASA Astrophysics Data System (ADS)

Zhang, Y.; Mendelev, M. I.; Wang, C. Z.; Ott, R.; Zhang, F.; Besser, M. F.; Ho, K. M.; Kramer, M. J.

2014-11-01

Despite numerous studies on the atomic structures of Cu-Zr metallic glasses (MGs), their inherent structural ordering, e.g., medium-range order (MRO), remains difficult to describe. Specifically lacking is an understanding of how the MRO responds to deformation and the associated changes in atomic mobility. In this paper, we focus on the impact of deformation on MRO and associated effect on diffusion in a well-relaxed C u64.5Z r35.5 MG by molecular dynamics simulations. The Cu-Zr MG exhibits a larger elastic limit of 0.035 and a yield stress of 3.5 GPa. The cluster alignment method was employed to characterize the icosahedral short-range order (ISRO) and Bergman-type medium-range order (BMRO) in the models upon loading and unloading. From this analysis, we find the disruption of both ISRO and BMRO occurs as the strain reaches about 0.02, well below the elastic limit. Within the elastic limit, the total fractions of ISRO or BMRO can be fully recovered upon unloading. The diffusivity increases six to eight times in regions undergoing plastic deformation, which is due to the dramatic disruption of the ISRO and BMRO. By mapping the spatial distributions of the mobile atoms, we demonstrate the increase in atomic mobility is due to the extended regions of disrupted ISRO and more importantly BMRO.

Interplay between Functional Connectivity and Scale-Free Dynamics in Intrinsic fMRI Networks

PubMed Central

Ciuciu, Philippe; Abry, Patrice; He, Biyu J.

2014-01-01

Studies employing functional connectivity-type analyses have established that spontaneous fluctuations in functional magnetic resonance imaging (fMRI) signals are organized within large-scale brain networks. Meanwhile, fMRI signals have been shown to exhibit 1/f-type power spectra – a hallmark of scale-free dynamics. We studied the interplay between functional connectivity and scale-free dynamics in fMRI signals, utilizing the fractal connectivity framework – a multivariate extension of the univariate fractional Gaussian noise model, which relies on a wavelet formulation for robust parameter estimation. We applied this framework to fMRI data acquired from healthy young adults at rest and performing a visual detection task. First, we found that scale-invariance existed beyond univariate dynamics, being present also in bivariate cross-temporal dynamics. Second, we observed that frequencies within the scale-free range do not contribute evenly to inter-regional connectivity, with a systematically stronger contribution of the lowest frequencies, both at rest and during task. Third, in addition to a decrease of the Hurst exponent and inter-regional correlations, task performance modified cross-temporal dynamics, inducing a larger contribution of the highest frequencies within the scale-free range to global correlation. Lastly, we found that across individuals, a weaker task modulation of the frequency contribution to inter-regional connectivity was associated with better task performance manifesting as shorter and less variable reaction times. These findings bring together two related fields that have hitherto been studied separately – resting-state networks and scale-free dynamics, and show that scale-free dynamics of human brain activity manifest in cross-regional interactions as well. PMID:24675649

The importance of stochasticity and internal variability in geomorphic erosion system

NASA Astrophysics Data System (ADS)

Kim, J.; Ivanov, V. Y.; Fatichi, S.

2016-12-01

Understanding soil erosion is essential for a range of studies but the predictive skill of prognostic models and reliability of national-scale assessments have been repeatedly questioned. Indeed, data from multiple environments indicate that fluvial soil loss is highly non-unique and its frequency distributions exhibit heavy tails. We reveal that these features are attributed to the high sensitivity of erosion response to micro-scale variations of soil erodibility - `geomorphic internal variability'. The latter acts as an intermediary between forcing and erosion dynamics, augmenting the conventionally emphasized effects of `external variability' (climate, topography, land use, management form). Furthermore, we observe a reduction of erosion non-uniqueness at larger temporal scales that correlates with environment stochasticity. Our analysis shows that this effect can be attributed to the larger likelihood of alternating characteristic regimes of sediment dynamics. The corollary of this study is that the glaring gap - the inherently large uncertainties and the fallacy of representativeness of central tendencies - must be conceded in soil loss assessments. Acknowledgement: This research was supported by a grant (16AWMP-B083066-03) from Water Management Research Program funded by Ministry of Land, Infrastructure and Transport of Korean government, and by the faculty research fund of Sejong University in 2016.

The fresnel interferometric imager

NASA Astrophysics Data System (ADS)

Koechlin, Laurent; Serre, Denis; Deba, Paul; Pelló, Roser; Peillon, Christelle; Duchon, Paul; Gomez de Castro, Ana Ines; Karovska, Margarita; Désert, Jean-Michel; Ehrenreich, David; Hebrard, Guillaume; Lecavelier Des Etangs, Alain; Ferlet, Roger; Sing, David; Vidal-Madjar, Alfred

2009-03-01

The Fresnel Interferometric Imager has been proposed to the European Space Agency (ESA) Cosmic Vision plan as a class L mission. This mission addresses several themes of the CV Plan: Exoplanet study, Matter in extreme conditions, and The Universe taking shape. This paper is an abridged version of the original ESA proposal. We have removed most of the technical and financial issues, to concentrate on the instrumental design and astrophysical missions. The instrument proposed is an ultra-lightweight telescope, featuring a novel optical concept based on diffraction focussing. It yields high dynamic range images, while releasing constraints on positioning and manufacturing of the main optical elements. This concept should open the way to very large apertures in space. In this two spacecraft formation-flying instrument, one spacecraft holds the focussing element: the Fresnel interferometric array; the other spacecraft holds the field optics, focal instrumentation, and detectors. The Fresnel array proposed here is a 3.6 ×3.6 m square opaque foil punched with 105 to 106 void “subapertures”. Focusing is achieved with no other optical element: the shape and positioning of the subapertures (holes in the foil) is responsible for beam combining by diffraction, and 5% to 10% of the total incident light ends up into a sharp focus. The consequence of this high number of subapertures is high dynamic range images. In addition, as it uses only a combination of vacuum and opaque material, this focussing method is potentially efficient over a very broad wavelength domain. The focal length of such diffractive focussing devices is wavelength dependent. However, this can be corrected. We have tested optically the efficiency of the chromatism correction on artificial sources (500 < λ < 750 nm): the images are diffraction limited, and the dynamic range measured on an artificial double source reaches 6.2 10 - 6. We have also validated numerical simulation algorithms for larger Fresnel interferometric arrays. These simulations yield a dynamic range (rejection factor) close to 10 - 8 for arrays such as the 3.6 m one we propose. A dynamic range of 10 - 8 allows detection of objects at contrasts as high as than 10 - 9 in most of the field. The astrophysical applications cover many objects in the IR, visible an UV domains. Examples are presented, taking advantage of the high angular resolution and dynamic range capabilities of this concept.

Importance of the correlation contribution for local hybrid functionals: range separation and self-interaction corrections.

PubMed

Arbuznikov, Alexei V; Kaupp, Martin

2012-01-07

Local hybrid functionals with their position-dependent exact-exchange admixture are a conceptually simple and promising extension of the concept of a hybrid functional. Local hybrids based on a simple mixing of the local spin density approximation (LSDA) with exact exchange have been shown to be successful for thermochemistry, reaction barriers, and a range of other properties. So far, the combination of this generation of local hybrids with an LSDA correlation functional has been found to give the most favorable results for atomization energies, for a range of local mixing functions (LMFs) governing the exact-exchange admixture. Here, we show that the choice of correlation functional to be used with local hybrid exchange crucially influences the parameterization also of the exchange part as well as the overall performance. A novel ansatz for the correlation part of local hybrids is suggested based on (i) range-separation of LSDA correlation into short-range (SR) and long-range (LR) parts, and (ii) partial or full elimination of the one-electron self-correlation from the SR part. It is shown that such modified correlation functionals allow overall larger exact exchange admixture in thermochemically competitive local hybrids than before. This results in improvements for reaction barriers and for other properties crucially influenced by self-interaction errors, as demonstrated by a number of examples. Based on the range-separation approach, a fresh view on the breakdown of the correlation energy into dynamical and non-dynamical parts is suggested.

Imaging multi-scale dynamics in vivo with spiral volumetric optoacoustic tomography

NASA Astrophysics Data System (ADS)

Deán-Ben, X. Luís.; Fehm, Thomas F.; Ford, Steven J.; Gottschalk, Sven; Razansky, Daniel

2017-03-01

Imaging dynamics in living organisms is essential for the understanding of biological complexity. While multiple imaging modalities are often required to cover both microscopic and macroscopic spatial scales, dynamic phenomena may also extend over different temporal scales, necessitating the use of different imaging technologies based on the trade-off between temporal resolution and effective field of view. Optoacoustic (photoacoustic) imaging has been shown to offer the exclusive capability to link multiple spatial scales ranging from organelles to entire organs of small animals. Yet, efficient visualization of multi-scale dynamics remained difficult with state-of-the-art systems due to inefficient trade-offs between image acquisition and effective field of view. Herein, we introduce a spiral volumetric optoacoustic tomography (SVOT) technique that provides spectrally-enriched high-resolution optical absorption contrast across multiple spatio-temporal scales. We demonstrate that SVOT can be used to monitor various in vivo dynamics, from video-rate volumetric visualization of cardiac-associated motion in whole organs to high-resolution imaging of pharmacokinetics in larger regions. The multi-scale dynamic imaging capability thus emerges as a powerful and unique feature of the optoacoustic technology that adds to the multiple advantages of this technology for structural, functional and molecular imaging.

Water uptake coefficients and deliquescence of NaCl nanoparticles at atmospheric relative humidities from molecular dynamics simulations

NASA Astrophysics Data System (ADS)

Bahadur, Ranjit; Russell, Lynn M.

2008-09-01

Deliquescence properties of sodium chloride are size dependent for particles smaller than 100 nm. Molecular dynamics (MD) simulations are used to determine deliquescence relative humidity (DRH) for particles in this size range by modeling idealized particles in contact with humid air. Constant humidity conditions are simulated by inclusion of a liquid reservoir of NaCl solution in contact with the vapor phase, which acts as a source of water molecules as uptake by the nanoparticle proceeds. DRH is bounded between the minimum humidity at which sustained water accumulation is observed at the particle surface and the maximum humidity at which water accumulation is not observed. Complete formation of a liquid layer is not observed due to computational limitations. The DRH determined increases with decreasing particle diameter, rising to between 91% and 93% for a 2.2 nm particle and between 81% and 85% for an 11 nm particle, higher than the 75% expected for particles larger than 100 nm. The simulated size dependence of DRH agrees well with predictions from bulk thermodynamic models and appears to converge with measurements for sizes larger than 10 nm. Complete deliquescence of nanoparticles in the 2-11 nm size range requires between 1 and 100 μs, exceeding the available computational resources for this study. Water uptake coefficients are near 0.1 with a negligible contribution from diffusion effects. Planar uptake coefficients decrease from 0.41 to 0.09 with increasing fractional water coverage from 0.002 to 1, showing a linear dependence on the logarithm of the coverage fraction with a slope of -0.08+/-0.01 (representing the effect of solvation). Particle uptake coefficients increase from 0.13 at 11 nm to 0.65 at 2.2 nm, showing a linear dependence on the logarithm of the edge fraction (which is a function of diameter) with a slope of 0.74+/-0.04 (representing larger edge effects in smaller particles).

The estimation of growth dynamics for Pomacea maculata from hatchling to adult

USGS Publications Warehouse

Sutton, Karyn L.; Zhao, Lihong; Carter, Jacoby

2017-01-01

Pomacea maculata is a relatively new invasive species to the Gulf Coast region and potentially threatens local agriculture (rice) and ecosystems (aquatic vegetation). The population dynamics of P. maculata have largely been unquantified, and therefore, scientists and field-workers are ill-equipped to accurately project population sizes and the resulting impact of this species. We studied the growth of P. maculata ranging in weights from 6 to 105 g, identifying the sex of the animals when possible. Our studied population had a 4:9 male:female sex ratio. We present the findings from initial analysis of the individual growth data of males and females, from which it was apparent that females were generally larger than males and that small snails grew faster than larger snails. Since efforts to characterize the male and female growth rates from individual data do not yield statistically supported estimates, we present the estimation of several parameterized growth rate functions within a population-level mathematical model. We provide a comparison of the results using these various growth functions and discuss which best characterizes the dynamics of our observed population. We conclude that both males and females exhibit biphasic growth rates, and thus, their growth is size-dependent. Further, our results suggest that there are notable differences between males and females that are important to take into consideration in order to accurately model this species' population dynamics. Lastly, we include preliminary analyses of ongoing experiments to provide initial estimates of growth in the earliest life stages (hatchling to ≈6 g).

Nonlinear temperature effects on multifractal complexity of metabolic rate of mice

PubMed Central

Bogdanovich, Jose M.; Bozinovic, Francisco

2016-01-01

Complex physiological dynamics have been argued to be a signature of healthy physiological function. Here we test whether the complexity of metabolic rate fluctuations in small endotherms decreases with lower environmental temperatures. To do so, we examine the multifractal temporal scaling properties of the rate of change in oxygen consumption r(VO2), in the laboratory mouse Mus musculus, assessing their long range correlation properties across seven different environmental temperatures, ranging from 0 °C to 30 °C. To do so, we applied multifractal detrended fluctuation analysis (MF-DFA), finding that r(VO2) fluctuations show two scaling regimes. For small time scales below the crossover time (approximately 102 s), either monofractal or weak multifractal dynamics are observed depending on whether Ta < 15 °C or Ta > 15 °C respectively. For larger time scales, r(VO2) fluctuations are characterized by an asymptotic scaling exponent that indicates multifractal anti-persistent or uncorrelated dynamics. For both scaling regimes, a generalization of the multiplicative cascade model provides very good fits for the Renyi exponents τ(q), showing that the infinite number of exponents h(q) can be described by only two independent parameters, a and b. We also show that the long-range correlation structure of r(VO2) time series differs from randomly shuffled series, and may not be explained as an artifact of stochastic sampling of a linear frequency spectrum. These results show that metabolic rate dynamics in a well studied micro-endotherm are consistent with a highly non-linear feedback control system. PMID:27781179

Nonlinear temperature effects on multifractal complexity of metabolic rate of mice.

PubMed

Labra, Fabio A; Bogdanovich, Jose M; Bozinovic, Francisco

2016-01-01

Complex physiological dynamics have been argued to be a signature of healthy physiological function. Here we test whether the complexity of metabolic rate fluctuations in small endotherms decreases with lower environmental temperatures. To do so, we examine the multifractal temporal scaling properties of the rate of change in oxygen consumption r ( VO 2 ), in the laboratory mouse Mus musculus , assessing their long range correlation properties across seven different environmental temperatures, ranging from 0 °C to 30 °C. To do so, we applied multifractal detrended fluctuation analysis (MF-DFA), finding that r(VO 2 ) fluctuations show two scaling regimes. For small time scales below the crossover time (approximately 10 2 s), either monofractal or weak multifractal dynamics are observed depending on whether T a < 15 °C or T a > 15 °C respectively. For larger time scales, r(VO 2 ) fluctuations are characterized by an asymptotic scaling exponent that indicates multifractal anti-persistent or uncorrelated dynamics. For both scaling regimes, a generalization of the multiplicative cascade model provides very good fits for the Renyi exponents τ ( q ), showing that the infinite number of exponents h(q) can be described by only two independent parameters, a and b . We also show that the long-range correlation structure of r(VO 2 ) time series differs from randomly shuffled series, and may not be explained as an artifact of stochastic sampling of a linear frequency spectrum. These results show that metabolic rate dynamics in a well studied micro-endotherm are consistent with a highly non-linear feedback control system.

Groundwater and Terrestrial Water Storage

NASA Technical Reports Server (NTRS)

Rodell, Matthew; Chambers, Don P.; Famiglietti, James S.

2012-01-01

Groundwater is a vital resource and also a dynamic component of the water cycle. Unconfined aquifer storage is less responsive to short term weather conditions than the near surface terrestrial water storage (TWS) components (soil moisture, surface water, and snow). However, save for the permanently frozen regions, it typically exhibits a larger range of variability over multi-annual periods than the other components. Groundwater is poorly monitored at the global scale, but terrestrial water storage (TWS) change data from the Gravity Recovery and Climate Experiment (GRACE) satellite mission are a reasonable proxy for unconfined groundwater at climatic scales.

Partially Filled Aperture Interferometric Telescopes: Achieving Large Aperture and Coronagraphic Performance

NASA Astrophysics Data System (ADS)

Moretto, G.; Kuhn, J.; Langlois, M.; Berdugyna, S.; Tallon, M.

2017-09-01

Telescopes larger than currently planned 30-m class instruments must break the mass-aperture scaling relationship of the Keck-generation of multi-segmented telescopes. Partially filled aperture, but highly redundant baseline interferometric instruments may achieve both large aperture and high dynamic range. The PLANETS FOUNDATION group has explored hybrid telescope-interferometer concepts for narrow-field optical systems that exhibit coronagraphic performance over narrow fields-of-view. This paper describes how the Colossus and Exo-Life Finder telescope designs achieve 10x lower moving masses than current Extremely Large Telescopes.

Uncertainty Due to Unsteady Fluid/Structure Interaction for the Ares I Vehicle Traversing the Transonic Regime

NASA Technical Reports Server (NTRS)

Bartels, Robert E.

2012-01-01

Rapid reduced-order numerical models are being investigated as candidates to simulate the dynamics of a flexible launch vehicle during atmospheric ascent. There has also been the extension of these new approaches to include gust response. These methods are used to perform aeroelastic and gust response analyses at isolated Mach numbers. Such models require a method to time march through a succession of ascent Mach numbers. An approach is presented for interpolating reduced-order models of the unsteady aerodynamics at successive Mach numbers. The transonic Mach number range is considered here since launch vehicles can suffer the highest dynamic loads through this range. Realistic simulations of the flexible vehicle behavior as it traverses this Mach number range are presented. The response of the vehicle due to gusts is computed. Uncertainties in root mean square and maximum bending moment and crew module accelerations are presented due to assumed probability distributions in design parameters, ascent flight conditions, gusts. The primary focus is on the uncertainty introduced by modeling fidelity. It is found that an unsteady reduced order model produces larger excursions in the root mean square loading and accelerations than does a quasi-steady reduced order model.

FAST: A multi-processed environment for visualization of computational fluid dynamics

NASA Technical Reports Server (NTRS)

Bancroft, Gordon V.; Merritt, Fergus J.; Plessel, Todd C.; Kelaita, Paul G.; Mccabe, R. Kevin

1991-01-01

Three-dimensional, unsteady, multi-zoned fluid dynamics simulations over full scale aircraft are typical of the problems being investigated at NASA Ames' Numerical Aerodynamic Simulation (NAS) facility on CRAY2 and CRAY-YMP supercomputers. With multiple processor workstations available in the 10-30 Mflop range, we feel that these new developments in scientific computing warrant a new approach to the design and implementation of analysis tools. These larger, more complex problems create a need for new visualization techniques not possible with the existing software or systems available as of this writing. The visualization techniques will change as the supercomputing environment, and hence the scientific methods employed, evolves even further. The Flow Analysis Software Toolkit (FAST), an implementation of a software system for fluid mechanics analysis, is discussed.

Evolution of a natural debris flow: In situ measurements of flow dynamics, video imagery, and terrestrial laser scanning

USGS Publications Warehouse

McCoy, S.W.; Kean, J.W.; Coe, J.A.; Staley, D.M.; Wasklewicz, T.A.; Tucker, G.E.

2010-01-01

Many theoretical and laboratory studies have been undertaken to understand debris-flow processes and their associated hazards. However, complete and quantitative data sets from natural debris flows needed for confirmation of these results are limited. We used a novel combination of in situ measurements of debris-flow dynamics, video imagery, and pre- and postflow 2-cm-resolution digital terrain models to study a natural debris-flow event. Our field data constrain the initial and final reach morphology and key flow dynamics. The observed event consisted of multiple surges, each with clear variation of flow properties along the length of the surge. Steep, highly resistant, surge fronts of coarse-grained material without measurable pore-fluid pressure were pushed along by relatively fine-grained and water-rich tails that had a wide range of pore-fluid pressures (some two times greater than hydrostatic). Surges with larger nonequilibrium pore-fluid pressures had longer travel distances. A wide range of travel distances from different surges of similar size indicates that dynamic flow properties are of equal or greater importance than channel properties in determining where a particular surge will stop. Progressive vertical accretion of multiple surges generated the total thickness of mapped debris-flow deposits; nevertheless, deposits had massive, vertically unstratified sedimentological textures. ?? 2010 Geological Society of America.

Optimality and oscillations near the edge of stability in the dynamics of autonomous vehicle platoons

NASA Astrophysics Data System (ADS)

Davis, L. C.

2013-09-01

A model that includes the mechanical response of a vehicle to a demanded change in acceleration is analyzed to determine the string stability of a platoon of autonomous vehicles. The response is characterized by a first-order time constant τ and an explicit delay td. The minimum value of the acceleration feedback control gain is found from calculations of the velocity of vehicles following a lead vehicle that decelerates sharply from high speed to low speed. Larger values of ξ (in the stable range) give larger values of deceleration for vehicles in the platoon. Optimal operation is attained close to the minimum value of ξ for stability. Small oscillations are found after the main peak in deceleration for ξ in the stable region but near the transition to instability. A theory for predicting the frequency and amplitude of the oscillations is presented.

Antiferroelectric polarization switching and dynamic scaling of energy storage: A Monte Carlo simulation

NASA Astrophysics Data System (ADS)

Huang, B. Y.; Lu, Z. X.; Zhang, Y.; Xie, Y. L.; Zeng, M.; Yan, Z. B.; Liu, J.-M.

2016-05-01

The polarization-electric field hysteresis loops and the dynamics of polarization switching in a two-dimensional antiferroelectric (AFE) lattice submitted to a time-oscillating electric field E(t) of frequency f and amplitude E0, is investigated using Monte Carlo simulation based on the Landau-Devonshire phenomenological theory on antiferroelectrics. It is revealed that the AFE double-loop hysteresis area A, i.e., the energy loss in one cycle of polarization switching, exhibits the single-peak frequency dispersion A(f), suggesting the unique characteristic time for polarization switching, which is independent of E0 as long as E0 is larger than the quasi-static coercive field for the antiferroelectric-ferroelectric transitions. However, the dependence of recoverable stored energy W on amplitude E0 seems to be complicated depending on temperature T and frequency f. A dynamic scaling behavior of the energy loss dispersion A(f) over a wide range of E0 is obtained, confirming the unique characteristic time for polarization switching of an AFE lattice. The present simulation may shed light on the dynamics of energy storage and release in AFE thin films.

Dynamic quadrupole interactions in semiconductors

NASA Astrophysics Data System (ADS)

Dang, Thien Thanh; Schell, Juliana; Lupascu, Doru C.; Vianden, Reiner

2018-04-01

The time differential perturbed angular correlation, TDPAC, technique has been used for several decades to study electric quadrupole hyperfine interactions in semiconductors such as dynamic quadrupole interactions (DQI) resulting from after-effects of the nuclear decay as well as static quadrupole interactions originating from static defects around the probe nuclei such as interstitial ions, stresses in the crystalline structure, and impurities. Nowadays, the quality of the available semiconductor materials is much better, allowing us to study purely dynamic interactions. We present TDPAC measurements on pure Si, Ge, GaAs, and InP as a function of temperature between 12 K and 110 K. The probe 111In (111Cd) was used. Implantation damage was recovered by thermal annealing. Si experienced the strongest DQI with lifetime, τg, increasing with rising temperature, followed by Ge. In contrast, InP and GaAs, which have larger band gaps and less electron concentration than Si and Ge in the same temperature range, presented no DQI. The results obtained also allow us to conclude that indirect band gap semiconductors showed the dynamic interaction, whereas the direct band gap semiconductors, restricted to GaAs and InP, did not.

The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery.

PubMed

Papaleo, Elena; Saladino, Giorgio; Lambrughi, Matteo; Lindorff-Larsen, Kresten; Gervasio, Francesco Luigi; Nussinov, Ruth

2016-06-08

Proteins are dynamic entities that undergo a plethora of conformational changes that may take place on a wide range of time scales. These changes can be as small as the rotation of one or a few side-chain dihedral angles or involve concerted motions in larger portions of the three-dimensional structure; both kinds of motions can be important for biological function and allostery. It is becoming increasingly evident that "connector regions" are important components of the dynamic personality of protein structures. These regions may be either disordered loops, i.e., poorly structured regions connecting secondary structural elements, or linkers that connect entire protein domains. Experimental and computational studies have, however, revealed that these regions are not mere connectors, and their role in allostery and conformational changes has been emerging in the last few decades. Here we provide a detailed overview of the structural properties and classification of loops and linkers, as well as a discussion of the main computational methods employed to investigate their function and dynamical properties. We also describe their importance for protein dynamics and allostery using as examples key proteins in cellular biology and human diseases such as kinases, ubiquitinating enzymes, and transcription factors.

Effects of wind energy generation and white-nose syndrome on the viability of the Indiana bat

USGS Publications Warehouse

Erickson, Richard A.; Thogmartin, Wayne E.; Diffendorfer, James E.; Russell, Robin E.; Szymanski, Jennifer A.

2016-01-01

Wind energy generation holds the potential to adversely affect wildlife populations. Species-wide effects are difficult to study and few, if any, studies examine effects of wind energy generation on any species across its entire range. One species that may be affected by wind energy generation is the endangered Indiana bat (Myotis sodalis), which is found in the eastern and midwestern United States. In addition to mortality from wind energy generation, the species also faces range-wide threats from the emerging infectious fungal disease, white-nose syndrome (WNS). White-nose syndrome, caused by Pseudogymnoascus destructans, disturbs hibernating bats leading to high levels of mortality. We used a spatially explicit full-annual-cycle model to investigate how wind turbine mortality and WNS may singly and then together affect population dynamics of this species. In the simulation, wind turbine mortality impacted the metapopulation dynamics of the species by causing extirpation of some of the smaller winter colonies. In general, effects of wind turbines were localized and focused on specific spatial subpopulations. Conversely, WNS had a depressive effect on the species across its range. Wind turbine mortality interacted with WNS and together these stressors had a larger impact than would be expected from either alone, principally because these stressors together act to reduce species abundance across the spectrum of population sizes. Our findings illustrate the importance of not only prioritizing the protection of large winter colonies as is currently done, but also of protecting metapopulation dynamics and migratory connectivity.

Ultra-high contrast retinal display system for single photoreceptor psychophysics

PubMed Central

Domdei, Niklas; Domdei, Lennart; Reiniger, Jenny L.; Linden, Michael; Holz, Frank G.; Roorda, Austin; Harmening, Wolf M.

2017-01-01

Due to the enormous dynamic range of human photoreceptors in response to light, studying their visual function in the intact retina challenges the stimulation hardware, specifically with regard to the displayable luminance contrast. The adaptive optics scanning laser ophthalmoscope (AOSLO) is an optical platform that focuses light to extremely small retinal extents, approaching the size of single photoreceptor cells. However, the current light modulation techniques produce spurious visible backgrounds which fundamentally limit experimental options. To remove unwanted background light and to improve contrast for high dynamic range visual stimulation in an AOSLO, we cascaded two commercial fiber-coupled acousto-optic modulators (AOMs) and measured their combined optical contrast. By compensating for zero-point differences in the individual AOMs, we demonstrate a multiplicative extinction ratio in the cascade that was in accordance with the extinction ratios of both single AOMs. When latency differences in the AOM response functions were individually corrected, single switch events as short as 50 ns with radiant power contrasts up to 1:1010 were achieved. This is the highest visual contrast reported for any display system so far. We show psychophysically that this contrast ratio is sufficient to stimulate single foveal photoreceptor cells with small and bright enough visible targets that do not contain a detectable background. Background-free stimulation will enable photoreceptor testing with custom adaptation lights. Furthermore, a larger dynamic range in displayable light levels can drive photoreceptor responses in cones as well as in rods. PMID:29359094

Effects of wind energy generation and white-nose syndrome on the viability of the Indiana bat.

PubMed

Erickson, Richard A; Thogmartin, Wayne E; Diffendorfer, Jay E; Russell, Robin E; Szymanski, Jennifer A

2016-01-01

Wind energy generation holds the potential to adversely affect wildlife populations. Species-wide effects are difficult to study and few, if any, studies examine effects of wind energy generation on any species across its entire range. One species that may be affected by wind energy generation is the endangered Indiana bat ( Myotis sodalis ), which is found in the eastern and midwestern United States. In addition to mortality from wind energy generation, the species also faces range-wide threats from the emerging infectious fungal disease, white-nose syndrome (WNS). White-nose syndrome, caused by Pseudogymnoascus destructans , disturbs hibernating bats leading to high levels of mortality. We used a spatially explicit full-annual-cycle model to investigate how wind turbine mortality and WNS may singly and then together affect population dynamics of this species. In the simulation, wind turbine mortality impacted the metapopulation dynamics of the species by causing extirpation of some of the smaller winter colonies. In general, effects of wind turbines were localized and focused on specific spatial subpopulations. Conversely, WNS had a depressive effect on the species across its range. Wind turbine mortality interacted with WNS and together these stressors had a larger impact than would be expected from either alone, principally because these stressors together act to reduce species abundance across the spectrum of population sizes. Our findings illustrate the importance of not only prioritizing the protection of large winter colonies as is currently done, but also of protecting metapopulation dynamics and migratory connectivity.

Oceanic forcing of coral reefs.

PubMed

Lowe, Ryan J; Falter, James L

2015-01-01

Although the oceans play a fundamental role in shaping the distribution and function of coral reefs worldwide, a modern understanding of the complex interactions between ocean and reef processes is still only emerging. These dynamics are especially challenging owing to both the broad range of spatial scales (less than a meter to hundreds of kilometers) and the complex physical and biological feedbacks involved. Here, we review recent advances in our understanding of these processes, ranging from the small-scale mechanics of flow around coral communities and their influence on nutrient exchange to larger, reef-scale patterns of wave- and tide-driven circulation and their effects on reef water quality and perceived rates of metabolism. We also examine regional-scale drivers of reefs such as coastal upwelling, internal waves, and extreme disturbances such as cyclones. Our goal is to show how a wide range of ocean-driven processes ultimately shape the growth and metabolism of coral reefs.

Long Range Earthquake Interaction in Iceland

NASA Astrophysics Data System (ADS)

Goltz, C.

2003-12-01

It has been observed that earthquakes can be triggered by similarly sized events at large distances. The phenomenon has recently been shown to be statistically significant at a range up to several source dimensions in global earthquake data. The most appropriate explanation of the phenomenon seems to be criticality of the Earth's crust as e.g. changes in static and dynamic stresses would otherwise be too small to trigger remote events. I present results for a regional (as opposed to global) study of seismicity in Iceland which is based on a high quality reprocessed catalogue. Results include the time-dependent determination of the maximum range of interaction and the correlation length and also address the question whether small events can trigger larger ones. Pitfalls such as data accuracy and geometry as well as boundary effects are thoroughly discussed. A comparison with surrogate data helps to assess the statistical significance of the results.

Radar backscatter properties of milo and soybeans

NASA Technical Reports Server (NTRS)

Bush, T. F.; Ulaby, F. T.; Metzler, T.

1975-01-01

The radar backscatter from fields of milo and soybeans was measured with a ground based radar as a function of frequency (8-18 GHz), polarization (HH and VV) and angle of incidence (0 deg-70 deg) during the summer of 1974. Supporting ground truth was gathered contemporaneously with the backscatter data. At nadir sigma deg of milo correlated highly, r = 0.96, with soil moisture in the milo field at 8.6 GHz but decreased to a value of r = 0.78 at a frequency of 17.0 GHz. Correlation studies of the variations of sigma deg with soil moisture in the soybean fields were not possible due to a lack of a meaningful soil moisture dynamic range. At the larger angles of incidence, however, sigma deg of soybeans did appear to be dependent on precipitation. It is suggested this phenomenon was caused by the rain altering plant geometry. In general sigma deg of both milo and soybeans had a relatively small dynamic range at the higher angles of incidence and showed no significant dependence on the measured crop parameters.

Performance evaluation of objective quality metrics for HDR image compression

NASA Astrophysics Data System (ADS)

Valenzise, Giuseppe; De Simone, Francesca; Lauga, Paul; Dufaux, Frederic

2014-09-01

Due to the much larger luminance and contrast characteristics of high dynamic range (HDR) images, well-known objective quality metrics, widely used for the assessment of low dynamic range (LDR) content, cannot be directly applied to HDR images in order to predict their perceptual fidelity. To overcome this limitation, advanced fidelity metrics, such as the HDR-VDP, have been proposed to accurately predict visually significant differences. However, their complex calibration may make them difficult to use in practice. A simpler approach consists in computing arithmetic or structural fidelity metrics, such as PSNR and SSIM, on perceptually encoded luminance values but the performance of quality prediction in this case has not been clearly studied. In this paper, we aim at providing a better comprehension of the limits and the potentialities of this approach, by means of a subjective study. We compare the performance of HDR-VDP to that of PSNR and SSIM computed on perceptually encoded luminance values, when considering compressed HDR images. Our results show that these simpler metrics can be effectively employed to assess image fidelity for applications such as HDR image compression.

Spatial heterogeneity in the carrying capacity of sika deer in Japan.

PubMed

Iijima, Hayato; Ueno, Mayumi

2016-06-09

Carrying capacity is 1 driver of wildlife population dynamics. Although in previous studies carrying capacity was considered to be a fixed entity, it may differ among locations due to environmental variation. The factors underlying variability in carrying capacity, however, have rarely been examined. Here, we investigated spatial heterogeneity in the carrying capacity of Japanese sika deer ( Cervus nippon ) from 2005 to 2014 in Yamanashi Prefecture, central Japan (mesh with grid cells of 5.5×4.6 km) by state-space modeling. Both carrying capacity and density dependence differed greatly among cells. Estimated carrying capacities ranged from 1.34 to 98.4 deer/km 2 . According to estimated population dynamics, grid cells with larger proportions of artificial grassland and deciduous forest were subject to lower density dependence and higher carrying capacity. We conclude that population dynamics of ungulates may vary spatially through spatial variation in carrying capacity and that the density level for controlling ungulate abundance should be based on the current density level relative to the carrying capacity for each area.

Study of Bulk and Elementary Screw Dislocation Assisted Reverse Breakdown in Low-Voltage (< 250 V) 4H-SiC p(sup +)n Junction Diodes--Part II: Dynamic Breakdown Properties. Part 2; Dynamic Breakdown Properties

NASA Technical Reports Server (NTRS)

Neudeck, Philip G.; Fazi, Christian

1999-01-01

This paper outlines the dynamic reverse-breakdown characteristics of low-voltage (<250 V) small-area <5 x 10(exp -4) sq cm 4H-SiC p(sup +)n diodes subjected to nonadiabatic breakdown-bias pulsewidths ranging from 0.1 to 20 microseconds. 4H-SiC diodes with and without elementary screw dislocations exhibited positive temperature coefficient of breakdown voltage and high junction failure power densities approximately five times larger than the average failure power density of reliable silicon pn rectifiers. This result indicates that highly reliable low-voltage SiC rectifiers may be attainable despite the presence of elementary screw dislocations. However, the impact of elementary screw dislocations on other more useful 4H-SiC power device structures, such as high-voltage (>1 kV) pn junction and Schottky rectifiers, and bipolar gain devices (thyristors, IGBT's, etc.) remains to be investigated.

Dissecting Protein Configurational Entropy into Conformational and Vibrational Contributions.

PubMed

Chong, Song-Ho; Ham, Sihyun

2015-10-01

Quantifying how the rugged nature of the underlying free-energy landscape determines the entropic cost a protein must incur upon folding and ligand binding is a challenging problem. Here, we present a novel computational approach that dissects the protein configurational entropy on the basis of the classification of protein dynamics on the landscape into two separate components: short-term vibrational dynamics related to individual free-energy wells and long-term conformational dynamics associated with transitions between wells. We apply this method to separate the configurational entropy of the protein villin headpiece subdomain into its conformational and vibrational components. We find that the change in configurational entropy upon folding is dominated by the conformational entropy despite the fact that the magnitude of the vibrational entropy is the significantly larger component in each of the folded and unfolded states, which is in accord with the previous empirical estimations. The straightforward applicability of our method to unfolded proteins promises a wide range of applications, including those related to intrinsically disordered proteins.

All-fiber dynamic gain equalizer based on a twisted long-period grating written by high-frequency CO2 laser pulses.

PubMed

Zhu, T; Rao, Y J; Wang, J L

2007-01-20

A novel dynamic gain equalizer for flattening Er-doped fiber amplifiers based on a twisted long-period fiber grating (LPFG) induced by high-frequency CO(2) laser pulses is reported for the first time to our knowledge. Experimental results show that its transverse-load sensitivity is up to 0.34 dB/(g.mm(-1)), while the twist ratio of the twisted LPFG is approximately 20 rad/m, which is 7 times higher than that of a torsion-free LPFG. In addition, it is found that the strong orientation dependence of the transverse-load sensitivity of the torsion-free LPFG reported previously has been weakened considerably. Therefore such a dynamic gain equalizer based on the unique transverse-load characteristics of the twisted LPFG provides a much larger adjustable range and makes packaging of the gain equalizer much easier. A demonstration has been carried out to flatten an Er-doped fiber amplifier to +/-0.5 dB over a 32 nm bandwidth.

Magnetic stray-field studies of a single Cobalt nanoelement as a component of the building blocks of artificial square spin ice

NASA Astrophysics Data System (ADS)

Pohlit, Merlin; Porrati, Fabrizio; Huth, Michael; Ohno, Yuzo; Ohno, Hideo; Müller, Jens

2016-02-01

We use Focused Electron Beam Deposition (FEBID) to directly write Cobalt magnetic nanoelements onto a micro-Hall magnetometer, which allows for high-sensitivity measurements of the magnetic stray field emanating from the samples. In a previous study [M. Pohlit et al., J. Appl. Phys. 117 (2015) 17C746] [21] we investigated thermal dynamics of an individual building block (nanocluster) of artificial square spin ice. In this work, we compare the results of this structure with interacting elements to the switching of a single nanoisland. By analyzing the survival function of the repeatedly prepared state in a given temperature range, we find thermally activated switching dynamics. A detailed analysis of the hysteresis loop reveals a metastable microstate preceding the overall magnetization reversal of the single nanoelement, also found in micromagnetic simulations. Such internal degrees of freedom may need to be considered, when analyzing the thermal dynamics of larger spin ice configurations on different lattice types.

Alignment Jig for the Precise Measurement of THz Radiation

NASA Technical Reports Server (NTRS)

Javadi, Hamid H.

2009-01-01

A miniaturized instrumentation package comprising a (1) Global Positioning System (GPS) receiver, (2) an inertial measurement unit (IMU) consisting largely of surface-micromachined sensors of the microelectromechanical systems (MEMS) type, and (3) a microprocessor, all residing on a single circuit board, is part of the navigation system of a compact robotic spacecraft intended to be released from a larger spacecraft [e.g., the International Space Station (ISS)] for exterior visual inspection of the larger spacecraft. Variants of the package may also be useful in terrestrial collision-detection and -avoidance applications. The navigation solution obtained by integrating the IMU outputs is fed back to a correlator in the GPS receiver to aid in tracking GPS signals. The raw GPS and IMU data are blended in a Kalman filter to obtain an optimal navigation solution, which can be supplemented by range and velocity data obtained by use of (l) a stereoscopic pair of electronic cameras aboard the robotic spacecraft and/or (2) a laser dynamic range imager aboard the ISS. The novelty of the package lies mostly in those aspects of the design of the MEMS IMU that pertain to controlling mechanical resonances and stabilizing scale factors and biases.

GPS/MEMS IMU/Microprocessor Board for Navigation

NASA Technical Reports Server (NTRS)

Gender, Thomas K.; Chow, James; Ott, William E.

2009-01-01

A miniaturized instrumentation package comprising a (1) Global Positioning System (GPS) receiver, (2) an inertial measurement unit (IMU) consisting largely of surface-micromachined sensors of the microelectromechanical systems (MEMS) type, and (3) a microprocessor, all residing on a single circuit board, is part of the navigation system of a compact robotic spacecraft intended to be released from a larger spacecraft [e.g., the International Space Station (ISS)] for exterior visual inspection of the larger spacecraft. Variants of the package may also be useful in terrestrial collision-detection and -avoidance applications. The navigation solution obtained by integrating the IMU outputs is fed back to a correlator in the GPS receiver to aid in tracking GPS signals. The raw GPS and IMU data are blended in a Kalman filter to obtain an optimal navigation solution, which can be supplemented by range and velocity data obtained by use of (l) a stereoscopic pair of electronic cameras aboard the robotic spacecraft and/or (2) a laser dynamic range imager aboard the ISS. The novelty of the package lies mostly in those aspects of the design of the MEMS IMU that pertain to controlling mechanical resonances and stabilizing scale factors and biases.

Dynamics of a neural system with a multiscale architecture

PubMed Central

Breakspear, Michael; Stam, Cornelis J

2005-01-01

The architecture of the brain is characterized by a modular organization repeated across a hierarchy of spatial scales—neurons, minicolumns, cortical columns, functional brain regions, and so on. It is important to consider that the processes governing neural dynamics at any given scale are not only determined by the behaviour of other neural structures at that scale, but also by the emergent behaviour of smaller scales, and the constraining influence of activity at larger scales. In this paper, we introduce a theoretical framework for neural systems in which the dynamics are nested within a multiscale architecture. In essence, the dynamics at each scale are determined by a coupled ensemble of nonlinear oscillators, which embody the principle scale-specific neurobiological processes. The dynamics at larger scales are ‘slaved’ to the emergent behaviour of smaller scales through a coupling function that depends on a multiscale wavelet decomposition. The approach is first explicated mathematically. Numerical examples are then given to illustrate phenomena such as between-scale bifurcations, and how synchronization in small-scale structures influences the dynamics in larger structures in an intuitive manner that cannot be captured by existing modelling approaches. A framework for relating the dynamical behaviour of the system to measured observables is presented and further extensions to capture wave phenomena and mode coupling are suggested. PMID:16087448

Close-packed structure dynamics with finite-range interaction: computational mechanics with individual layer interaction.

PubMed

Rodriguez-Horta, Edwin; Estevez-Rams, Ernesto; Lora-Serrano, Raimundo; Neder, Reinhard

2017-09-01

This is the second contribution in a series of papers dealing with dynamical models in equilibrium theories of polytypism. A Hamiltonian introduced by Ahmad & Khan [Phys. Status Solidi B (2000), 218, 425-430] avoids the unphysical assignment of interaction terms to fictitious entities given by spins in the Hägg coding of the stacking arrangement. In this paper an analysis of polytype generation and disorder in close-packed structures is made for such a Hamiltonian. Results are compared with a previous analysis using the Ising model. Computational mechanics is the framework under which the analysis is performed. The competing effects of disorder and structure, as given by entropy density and excess entropy, respectively, are discussed. It is argued that the Ahmad & Khan model is simpler and predicts a larger set of polytypes than previous treatments.

Multifractal analysis of the time series of daily means of wind speed in complex regions

NASA Astrophysics Data System (ADS)

Laib, Mohamed; Golay, Jean; Telesca, Luciano; Kanevski, Mikhail

2018-04-01

In this paper, we applied the multifractal detrended fluctuation analysis to the daily means of wind speed measured by 119 weather stations distributed over the territory of Switzerland. The analysis was focused on the inner time fluctuations of wind speed, which could be more linked with the local conditions of the highly varying topography of Switzerland. Our findings point out to a persistent behaviour of all the measured wind speed series (indicated by a Hurst exponent significantly larger than 0.5), and to a high multifractality degree indicating a relative dominance of the large fluctuations in the dynamics of wind speed, especially in the Swiss plateau, which is comprised between the Jura and Alp mountain ranges. The study represents a contribution to the understanding of the dynamical mechanisms of wind speed variability in mountainous regions.

Kepler constraints on planets near hot Jupiters.

PubMed

Steffen, Jason H; Ragozzine, Darin; Fabrycky, Daniel C; Carter, Joshua A; Ford, Eric B; Holman, Matthew J; Rowe, Jason F; Welsh, William F; Borucki, William J; Boss, Alan P; Ciardi, David R; Quinn, Samuel N

2012-05-22

We present the results of a search for planetary companions orbiting near hot Jupiter planet candidates (Jupiter-size candidates with orbital periods near 3 d) identified in the Kepler data through its sixth quarter of science operations. Special emphasis is given to companions between the 21 interior and exterior mean-motion resonances. A photometric transit search excludes companions with sizes ranging from roughly two-thirds to five times the size of the Earth, depending upon the noise properties of the target star. A search for dynamically induced deviations from a constant period (transit timing variations) also shows no significant signals. In contrast, comparison studies of warm Jupiters (with slightly larger orbits) and hot Neptune-size candidates do exhibit signatures of additional companions with these same tests. These differences between hot Jupiters and other planetary systems denote a distinctly different formation or dynamical history.

The role of fire-return interval and season of burn in snag dynamics in a south Florida slash pine forest

USGS Publications Warehouse

Lloyd, John D.; Slater, Gary L.; Snyder, James R.

2012-01-01

Standing dead trees, or snags, are an important habitat element for many animal species. In many ecosystems, fire is a primary driver of snag population dynamics because it can both create and consume snags. The objective of this study was to examine how variation in two key components of the fire regime—fire-return interval and season of burn—affected population dynamics of snags. Using a factorial design, we exposed 1 ha plots, located within larger burn units in a south Florida slash pine (Pinus elliottii var. densa Little and Dorman) forest, to prescribed fire applied at two intervals (approximately 3-year intervals vs. approximately 6-year intervals) and during two seasons (wet season vs. dry season) over a 12- to 13-year period. We found no consistent effect of fire season or frequency on the density of lightly to moderately decayed or heavily decayed snags, suggesting that variation in these elements of the fire regime at the scale we considered is relatively unimportant in the dynamics of snag populations. However, our confidence in these findings is limited by small sample sizes, potentially confounding effects of unmeasured variation in fire behavior and effects (e.g., intensity, severity, synergy with drought cycles) and wide variation in responses within a treatment level. The generalizing of our findings is also limited by the narrow range of treatment levels considered. Future experiments incorporating a wider range of fire regimes and directly quantifying fire intensity would prove useful in identifying more clearly the role of fire in shaping the dynamics of snag populations.

Hair cells use active zones with different voltage dependence of Ca2+ influx to decompose sounds into complementary neural codes

PubMed Central

Ohn, Tzu-Lun; Rutherford, Mark A.; Jing, Zhizi; Jung, Sangyong; Duque-Afonso, Carlos J.; Hoch, Gerhard; Picher, Maria Magdalena; Scharinger, Anja; Strenzke, Nicola; Moser, Tobias

2016-01-01

For sounds of a given frequency, spiral ganglion neurons (SGNs) with different thresholds and dynamic ranges collectively encode the wide range of audible sound pressures. Heterogeneity of synapses between inner hair cells (IHCs) and SGNs is an attractive candidate mechanism for generating complementary neural codes covering the entire dynamic range. Here, we quantified active zone (AZ) properties as a function of AZ position within mouse IHCs by combining patch clamp and imaging of presynaptic Ca2+ influx and by immunohistochemistry. We report substantial AZ heterogeneity whereby the voltage of half-maximal activation of Ca2+ influx ranged over ∼20 mV. Ca2+ influx at AZs facing away from the ganglion activated at weaker depolarizations. Estimates of AZ size and Ca2+ channel number were correlated and larger when AZs faced the ganglion. Disruption of the deafness gene GIPC3 in mice shifted the activation of presynaptic Ca2+ influx to more hyperpolarized potentials and increased the spontaneous SGN discharge. Moreover, Gipc3 disruption enhanced Ca2+ influx and exocytosis in IHCs, reversed the spatial gradient of maximal Ca2+ influx in IHCs, and increased the maximal firing rate of SGNs at sound onset. We propose that IHCs diversify Ca2+ channel properties among AZs and thereby contribute to decomposing auditory information into complementary representations in SGNs. PMID:27462107

Automatic image equalization and contrast enhancement using Gaussian mixture modeling.

PubMed

Celik, Turgay; Tjahjadi, Tardi

2012-01-01

In this paper, we propose an adaptive image equalization algorithm that automatically enhances the contrast in an input image. The algorithm uses the Gaussian mixture model to model the image gray-level distribution, and the intersection points of the Gaussian components in the model are used to partition the dynamic range of the image into input gray-level intervals. The contrast equalized image is generated by transforming the pixels' gray levels in each input interval to the appropriate output gray-level interval according to the dominant Gaussian component and the cumulative distribution function of the input interval. To take account of the hypothesis that homogeneous regions in the image represent homogeneous silences (or set of Gaussian components) in the image histogram, the Gaussian components with small variances are weighted with smaller values than the Gaussian components with larger variances, and the gray-level distribution is also used to weight the components in the mapping of the input interval to the output interval. Experimental results show that the proposed algorithm produces better or comparable enhanced images than several state-of-the-art algorithms. Unlike the other algorithms, the proposed algorithm is free of parameter setting for a given dynamic range of the enhanced image and can be applied to a wide range of image types.

Ideal Particle Sizes for Inhaled Steroids Targeting Vocal Granulomas: Preliminary Study Using Computational Fluid Dynamics.

PubMed

Perkins, Elizabeth L; Basu, Saikat; Garcia, Guilherme J M; Buckmire, Robert A; Shah, Rupali N; Kimbell, Julia S

2018-03-01

Objectives Vocal fold granulomas are benign lesions of the larynx commonly caused by gastroesophageal reflux, intubation, and phonotrauma. Current medical therapy includes inhaled corticosteroids to target inflammation that leads to granuloma formation. Particle sizes of commonly prescribed inhalers range over 1 to 4 µm. The study objective was to use computational fluid dynamics to investigate deposition patterns over a range of particle sizes of inhaled corticosteroids targeting the larynx and vocal fold granulomas. Study Design Retrospective, case-specific computational study. Setting Tertiary academic center. Subjects/Methods A 3-dimensional anatomically realistic computational model of a normal adult airway from mouth to trachea was constructed from 3 computed tomography scans. Virtual granulomas of varying sizes and positions along the vocal fold were incorporated into the base model. Assuming steady-state, inspiratory, turbulent airflow at 30 L/min, computational fluid dynamics was used to simulate respiratory transport and deposition of inhaled corticosteroid particles ranging over 1 to 20 µm. Results Laryngeal deposition in the base model peaked for particle sizes 8 to 10 µm (2.8%-3.5%). Ideal sizes ranged over 6 to 10, 7 to 13, and 7 to 14 µm for small, medium, and large granuloma sizes, respectively. Glottic deposition was maximal at 10.8% for 9-µm-sized particles for the large posterior granuloma, 3 times the normal model (3.5%). Conclusion As the virtual granuloma size increased and the location became more posterior, glottic deposition and ideal particle size generally increased. This preliminary study suggests that inhalers with larger particle sizes, such as fluticasone propionate dry-powder inhaler, may improve laryngeal drug deposition. Most commercially available inhalers have smaller particles than suggested here.

Prediction and validation of diffusion coefficients in a model drug delivery system using microsecond atomistic molecular dynamics simulation and vapour sorption analysis.

PubMed

Forrey, Christopher; Saylor, David M; Silverstein, Joshua S; Douglas, Jack F; Davis, Eric M; Elabd, Yossef A

2014-10-14

Diffusion of small to medium sized molecules in polymeric medical device materials underlies a broad range of public health concerns related to unintended leaching from or uptake into implantable medical devices. However, obtaining accurate diffusion coefficients for such systems at physiological temperature represents a formidable challenge, both experimentally and computationally. While molecular dynamics simulation has been used to accurately predict the diffusion coefficients, D, of a handful of gases in various polymers, this success has not been extended to molecules larger than gases, e.g., condensable vapours, liquids, and drugs. We present atomistic molecular dynamics simulation predictions of diffusion in a model drug eluting system that represent a dramatic improvement in accuracy compared to previous simulation predictions for comparable systems. We find that, for simulations of insufficient duration, sub-diffusive dynamics can lead to dramatic over-prediction of D. We present useful metrics for monitoring the extent of sub-diffusive dynamics and explore how these metrics correlate to error in D. We also identify a relationship between diffusion and fast dynamics in our system, which may serve as a means to more rapidly predict diffusion in slowly diffusing systems. Our work provides important precedent and essential insights for utilizing atomistic molecular dynamics simulations to predict diffusion coefficients of small to medium sized molecules in condensed soft matter systems.

Effects of population reduction on white-tailed deer home-range dynamics

USGS Publications Warehouse

Crimmins, Shawn M.; Edwards, John W.; Campbell, Tyler A; Ford, W. Mark; Keyser, Patrick D.; Miller, Brad F.; Miller, Karl V.

2015-01-01

Management strategies designed to reduce the negative impacts of overabundant Odocoileus virginianus (White-tailed Deer) populations on forest regeneration may be influenced by changes in both population density and timber harvest. However, there is conflicting evidence as to how such changes in per capita resource availability influence home-range patterns. We compared home-range patterns of 33 female White-tailed Deer from a low-density population at a site with abundant browse to patterns of a sample of >100 females prior to a 75% reduction in population density and a doubling in timber harvest area. Home-range and core-area sizes were approximately 3 times larger than were found prior to population decline and timber harvest increase, consistent with predictions related to intraspecific competition. We also observed greater site fidelity than previously exhibited, although this may be an artifact of increased home-range sizes. Our results support previous research suggesting that White-tailed Deer home-range size is inversely related to population density and is driven, in part, by intraspecific competition for resources. Relationships among population density, resource availability, and home-range patterns among female White-tailed Deer appear to be complex and context specific.

Detectability of compact binary merger macronovae

NASA Astrophysics Data System (ADS)

Rosswog, S.; Feindt, U.; Korobkin, O.; Wu, M.-R.; Sollerman, J.; Goobar, A.; Martinez-Pinedo, G.

2017-05-01

We study the optical and near-infrared luminosities and detectability of radioactively powered electromagnetic transients (‘macronovae’) occuring in the aftermath of binary neutron star and neutron star black hole mergers. We explore the transients that result from the dynamic ejecta and those from different types of wind outflows. Based on full nuclear network simulations we calculate the resulting light curves in different wavelength bands. We scrutinize the robustness of the results by comparing (a) two different nuclear reaction networks and (b) two macronova models. We explore in particular how sensitive the results are to the production of α-decaying trans-lead nuclei. We compare two frequently used mass models: the finite-range Droplet model (FRDM) and the nuclear mass model of Duflo and Zuker (DZ31). We find that the abundance of α-decaying trans-lead nuclei has a significant impact on the observability of the resulting macronovae. For example, the DZ31 model yields considerably larger abundances resulting in larger heating rates and thermalization efficiencies and therefore predicts substantially brighter macronova transients. We find that the dynamic ejecta from NSNS models can reach peak K-band magnitudes in excess of  -15 while those from NSBH cases can reach beyond  -16. Similar values can be reached by some of our wind models. Several of our models (both wind and dynamic ejecta) yield properties that are similar to the transient that was observed in the aftermath of the short GRB 130603B. We further explore the expected macronova detection frequencies for current and future instruments such as VISTA, ZTF and LSST.

Effects of wind energy generation and white-nose syndrome on the viability of the Indiana bat

PubMed Central

Thogmartin, Wayne E.; Diffendorfer, Jay E.; Russell, Robin E.; Szymanski, Jennifer A.

2016-01-01

Wind energy generation holds the potential to adversely affect wildlife populations. Species-wide effects are difficult to study and few, if any, studies examine effects of wind energy generation on any species across its entire range. One species that may be affected by wind energy generation is the endangered Indiana bat (Myotis sodalis), which is found in the eastern and midwestern United States. In addition to mortality from wind energy generation, the species also faces range-wide threats from the emerging infectious fungal disease, white-nose syndrome (WNS). White-nose syndrome, caused by Pseudogymnoascus destructans, disturbs hibernating bats leading to high levels of mortality. We used a spatially explicit full-annual-cycle model to investigate how wind turbine mortality and WNS may singly and then together affect population dynamics of this species. In the simulation, wind turbine mortality impacted the metapopulation dynamics of the species by causing extirpation of some of the smaller winter colonies. In general, effects of wind turbines were localized and focused on specific spatial subpopulations. Conversely, WNS had a depressive effect on the species across its range. Wind turbine mortality interacted with WNS and together these stressors had a larger impact than would be expected from either alone, principally because these stressors together act to reduce species abundance across the spectrum of population sizes. Our findings illustrate the importance of not only prioritizing the protection of large winter colonies as is currently done, but also of protecting metapopulation dynamics and migratory connectivity. PMID:28028486

Dynamic light scattering for the characterization and counting of extracellular vesicles: a powerful noninvasive tool

NASA Astrophysics Data System (ADS)

Palmieri, Valentina; Lucchetti, Donatella; Gatto, Ilaria; Maiorana, Alessandro; Marcantoni, Margherita; Maulucci, Giuseppe; Papi, Massimiliano; Pola, Roberto; De Spirito, Marco; Sgambato, Alessandro

2014-09-01

Extracellular vesicles (EVs) are cell-to-cell shuttles that have recently drawn interest both as drug delivery platforms and disease biomarkers. Despite the increasingly recognized relevance of these vesicles, their detection, and characterization still have several technical drawbacks. In this paper, we accurately assess the size distribution and concentration of EVs by using a high-throughput non-perturbative technique such as Dynamic Light Scattering (DLS). The vesicle radii distribution, as further confirmed by Atomic Force Microscopy experiments, ranges from 10 to 80 nm and appears very asymmetric towards larger radii with a main peak at roughly 30 nm. By combining DLS and Bradford assay, we also demonstrate the feasibility of recovering the concentration and its distribution of proteins contained inside vesicles. The sensitivity of our approach allows to detect protein concentrations as low as 0.01 mg/ml.

Stability and superconducting properties of GaH5 at high pressure

NASA Astrophysics Data System (ADS)

Ning, Yan-Li; Yang, Wen-Hua; Zang, Qing-Jun; Lu, Wen-Cai

2017-11-01

Using genetic algorithm (GA) method combined with first-principles calculations, the structures, dynamical and thermodynamic stabilities of GaH5 were studied. The calculated results suggested that at the pressure range 150-400 GPa, the P21/m phase of GaH5 is the most favorable phase and dynamically stable, but thermodynamically it is unstable and can decompose into GaH3 and H2. The superconducting property of GaH5 was further calculated, and the predicted superconducting transformation temperature Tc of GaH5 P21/m phase is about 35.63 K at 250 GPa. Besides, we compared the GaH5 and GaH3 superconducting properties, and found that GaH3-Pm-3n structure has a larger DOS near Fermi level than GaH5-P21/m structure, which may be the main reason causing higher Tc of GaH3 than GaH5.

Dynamics in the Plastic Crystalline Phases of Cyclohexanol and Cyclooctanol Studied by Quasielastic Neutron Scattering.

PubMed

Novak, E; Jalarvo, N; Gupta, S; Hong, K; Förster, S; Egami, T; Ohl, M

2018-06-01

Plastic crystals are a promising candidate for solid state ionic conductors. In this work, quasielastic neutron scattering is employed to investigate the center of mass diffusive motions in two types of plastic crystalline cyclic alcohols: cyclohexanol and cyclooctanol. Two separate motions are observed which are attributed to long-range translational diffusion (α-process) and cage rattling (fast β-process). Residence times and diffusion coefficients are calculated for both processes, along with the confinement distances for the cage rattling. In addition, a binary mixture of these two materials is measured to understand how the dynamics change when a second type of molecule is added to the matrix. It is observed that, upon the addition of the larger cyclooctanol molecules into the cyclohexanol solution, the cage size decreases, which causes a decrease in the observed diffusion rates for both the α- and fast β-processes.

Melt infiltration of silicon carbide compacts. I - Study of infiltration dynamics

NASA Technical Reports Server (NTRS)

Asthana, Rajiv; Rohatgi, Pradeep K.

1992-01-01

Countergravity, pressure-assisted infiltration with a 2014 Al alloy of suitably tamped porous compacts of platelet shaped single crystals of alpha (hexagonal) silicon carbide was used to measure particulate wettability and infiltration kinetics under dynamic conditions relevant to pressure casting of composites. A threshold pressure P(th) for ingression of the infiltrant was identified based on the experimental penetration length versus pressure profiles for a range of experimental variables which included infiltration pressure, infiltration time, SiC size and SiC surface chemistry. The results showed that P(th) decreased whereas the penetration length increased with increasing SiC size and infiltration time. Cu-coated SiC led to lower P(th) and larger penetration lengths compared to uncoated SiC under identical conditions. These observations have been discussed in the light of theoretical models of infiltration and the kinetics of wetting.

Dynamics and Predictability of Hurricane Humberto (2007) Revealed from Ensemble Analysis and Forecasting

NASA Technical Reports Server (NTRS)

Sippel, Jason A.; Zhang, Fuqing

2009-01-01

This study uses short-range ensemble forecasts initialized with an Ensemble-Kalman filter to study the dynamics and predictability of Hurricane Humberto, which made landfall along the Texas coast in 2007. Statistical correlation is used to determine why some ensemble members strengthen the incipient low into a hurricane and others do not. It is found that deep moisture and high convective available potential energy (CAPE) are two of the most important factors for the genesis of Humberto. Variations in CAPE result in as much difference (ensemble spread) in the final hurricane intensity as do variations in deep moisture. CAPE differences here are related to the interaction between the cyclone and a nearby front, which tends to stabilize the lower troposphere in the vicinity of the circulation center. This subsequently weakens convection and slows genesis. Eventually the wind-induced surface heat exchange mechanism and differences in landfall time result in even larger ensemble spread. 1

Pattern Selection and Super-Patterns in Opinion Dynamics

NASA Astrophysics Data System (ADS)

Ben-Naim, Eli; Scheel, Arnd

We study pattern formation in the bounded confidence model of opinion dynamics. In this random process, opinion is quantified by a single variable. Two agents may interact and reach a fair compromise, but only if their difference of opinion falls below a fixed threshold. Starting from a uniform distribution of opinions with compact support, a traveling wave forms and it propagates from the domain boundary into the unstable uniform state. Consequently, the system reaches a steady state with isolated clusters that are separated by distance larger than the interaction range. These clusters form a quasi-periodic pattern where the sizes of the clusters and the separations between them are nearly constant. We obtain analytically the average separation between clusters L. Interestingly, there are also very small quasi-periodic modulations in the size of the clusters. The spatial periods of these modulations are a series of integers that follow from the continued-fraction representation of the irrational average separation L.

A Functional Subnetwork Approach to Designing Synthetic Nervous Systems That Control Legged Robot Locomotion

PubMed Central

Szczecinski, Nicholas S.; Hunt, Alexander J.; Quinn, Roger D.

2017-01-01

A dynamical model of an animal’s nervous system, or synthetic nervous system (SNS), is a potentially transformational control method. Due to increasingly detailed data on the connectivity and dynamics of both mammalian and insect nervous systems, controlling a legged robot with an SNS is largely a problem of parameter tuning. Our approach to this problem is to design functional subnetworks that perform specific operations, and then assemble them into larger models of the nervous system. In this paper, we present networks that perform addition, subtraction, multiplication, division, differentiation, and integration of incoming signals. Parameters are set within each subnetwork to produce the desired output by utilizing the operating range of neural activity, R, the gain of the operation, k, and bounds based on biological values. The assembly of large networks from functional subnetworks underpins our recent results with MantisBot. PMID:28848419

Kepler constraints on planets near hot Jupiters

PubMed Central

Steffen, Jason H.; Ragozzine, Darin; Fabrycky, Daniel C.; Carter, Joshua A.; Ford, Eric B.; Holman, Matthew J.; Rowe, Jason F.; Welsh, William F.; Borucki, William J.; Boss, Alan P.; Ciardi, David R.; Quinn, Samuel N.

2012-01-01

We present the results of a search for planetary companions orbiting near hot Jupiter planet candidates (Jupiter-size candidates with orbital periods near 3 d) identified in the Kepler data through its sixth quarter of science operations. Special emphasis is given to companions between the 2∶1 interior and exterior mean-motion resonances. A photometric transit search excludes companions with sizes ranging from roughly two-thirds to five times the size of the Earth, depending upon the noise properties of the target star. A search for dynamically induced deviations from a constant period (transit timing variations) also shows no significant signals. In contrast, comparison studies of warm Jupiters (with slightly larger orbits) and hot Neptune-size candidates do exhibit signatures of additional companions with these same tests. These differences between hot Jupiters and other planetary systems denote a distinctly different formation or dynamical history. PMID:22566651

Astrophysical targets of the Fresnel diffractive imager

NASA Astrophysics Data System (ADS)

Koechlin, L.; Deba, P.; Raksasataya, T.

2017-11-01

The Fresnel Diffractive imager is an innovative concept of distributed space telescope, for high resolution (milli arc-seconds) spectro-imaging in the IR, visible and UV domains. This paper presents its optical principle and the science that can be done on potential astrophysical targets. The novelty lies in the primary optics: a binary Fresnel array, akin to a binary Fresnel zone plate. The main interest of this approach is the relaxed manufacturing and positioning constraints. While having the resolution and imaging capabilities of lens or mirrors of equivalent size, no optical material is involved in the focusing process: just vacuum. A Fresnel array consists of millions void subapertures punched into a large and thin opaque membrane, that focus light by diffraction into a compact and highly contrasted image. The positioning law of the aperture edges drives the image quality and contrast. This optical concept allows larger and lighter apertures than solid state optics, aiming to high angular resolution and high dynamic range imaging, in particular for UV applications. Diffraction focusing implies very long focal distances, up to dozens of kilometers, which requires at least a two-vessel formation flying in space. The first spacecraft, "the Fresnel Array spacecraft", holds the large punched foil: the Fresnel Array. The second, the "Receiver spacecraft" holds the field optics and focal instrumentation. A chromatism correction feature enables moderately large (20%) relative wavebands, and fields of a few to a dozen arc seconds. This Fresnel imager is adapted to high contrast stellar environments: dust disks, close companions and (we hope) exoplanets. Specific to the particular grid-like pattern of the primary focusing zone plate, is the very high dynamic range achieved in the images, in the case of compact objects. Large stellar photospheres may also be mapped with Fresnel arrays of a few meters opertaing in the UV. Larger and more complex fields can be imaged with a lesser dynamic range: galactic or extragalactic, or at the opposite distance scale: small solar system bodies. This paper will briefly address the optical principle, and in more detail the astrophysical missions and targets proposed for a 4-meter class demonstrator: - Exoplanet imaging, Exoplanet spectroscopic analysis in the visible and UV, - Stellar environments, young stellar systems, disks, - Galactic clouds, astrochemistry, - IR observation of the galactic center, - Small objects of our solar system.

A novel grid-based mesoscopic model for evacuation dynamics

NASA Astrophysics Data System (ADS)

Shi, Meng; Lee, Eric Wai Ming; Ma, Yi

2018-05-01

This study presents a novel grid-based mesoscopic model for evacuation dynamics. In this model, the evacuation space is discretised into larger cells than those used in microscopic models. This approach directly computes the dynamic changes crowd densities in cells over the course of an evacuation. The density flow is driven by the density-speed correlation. The computation is faster than in traditional cellular automata evacuation models which determine density by computing the movements of each pedestrian. To demonstrate the feasibility of this model, we apply it to a series of practical scenarios and conduct a parameter sensitivity study of the effect of changes in time step δ. The simulation results show that within the valid range of δ, changing δ has only a minor impact on the simulation. The model also makes it possible to directly acquire key information such as bottleneck areas from a time-varied dynamic density map, even when a relatively large time step is adopted. We use the commercial software AnyLogic to evaluate the model. The result shows that the mesoscopic model is more efficient than the microscopic model and provides more in-situ details (e.g., pedestrian movement pattern) than the macroscopic models.

Probing excitons in transition metal dichalcogenides by Drude-like exciton intraband absorption.

PubMed

Zhao, Siqi; He, Dawei; He, Jiaqi; Zhang, Xinwu; Yi, Lixin; Wang, Yongsheng; Zhao, Hui

2018-05-24

Understanding excitonic dynamics in two-dimensional semiconducting transition metal dichalcogenides is important for developing their optoelectronic applications. Recently, transient absorption techniques based on resonant excitonic absorption have been used to study various aspects of excitonic dynamics in these materials. The transient absorption in such measurements originates from phase-space state filling, bandgap renormalization, or screening effects. Here we report a new method to probe excitonic dynamics based on exciton intraband absorption. In this Drude-like process, probe photons are absorbed by excitons in their intraband excitation to higher energy states, causing a transient absorption signal. Although the magnitude of the transient absorption is lower than that of the resonant techniques, the new method is less restrictive on the selection of probe wavelength, has a larger linear range, and can provide complementary information on photocarrier dynamics. Using the WS2 monolayer and bulk samples as examples, we show that the new method can probe exciton-exciton annihilation at high densities and reveal exciton formation processes. We also found that the exciton intraband absorption cross section of the WS2 monolayer is on the order of 10-18 cm2.

Unsteady flow challenges tracking performance at vortex shedding frequencies without disrupting lift mechanisms

NASA Astrophysics Data System (ADS)

Matthews, Megan; Sponberg, Simon

2017-11-01

Birds, insects, and many animals use unsteady aerodynamic mechanisms to achieve stable hovering flight. Natural environments are often characterized by unsteady flows causing animals to dynamically respond to perturbations while performing complex tasks, such as foraging. Little is known about how unsteady flow around an animal interacts with already unsteady flow in the environment or how this impacts performance. We study how the environment impacts maneuverability to reveal any coupling between body dynamics and aerodynamics for hawkmoths, Manduca sexta,tracking a 3D-printed robotic flower in a wind tunnel. We also observe the leading-edge vortex (LEV), a known lift-generating mechanism for insect flight with smoke visualization. Moths in still and unsteady air exhibit near perfect tracking at low frequencies, but tracking in the flower wake results in larger overshoot at mid-range. Smoke visualization of the flower wake shows that the dominant vortex shedding corresponds to the same frequency band as the increased overshoot. Despite the large effect on flight dynamics, the LEV remains bound to the wing and thorax throughout the wingstroke. In general, unsteady wind seems to decrease maneuverability, but LEV stability seems decoupled from changes in flight dynamics.

A hybrid stochastic hierarchy equations of motion approach to treat the low temperature dynamics of non-Markovian open quantum systems

NASA Astrophysics Data System (ADS)

Moix, Jeremy M.; Cao, Jianshu

2013-10-01

The hierarchical equations of motion technique has found widespread success as a tool to generate the numerically exact dynamics of non-Markovian open quantum systems. However, its application to low temperature environments remains a serious challenge due to the need for a deep hierarchy that arises from the Matsubara expansion of the bath correlation function. Here we present a hybrid stochastic hierarchical equation of motion (sHEOM) approach that alleviates this bottleneck and leads to a numerical cost that is nearly independent of temperature. Additionally, the sHEOM method generally converges with fewer hierarchy tiers allowing for the treatment of larger systems. Benchmark calculations are presented on the dynamics of two level systems at both high and low temperatures to demonstrate the efficacy of the approach. Then the hybrid method is used to generate the exact dynamics of systems that are nearly impossible to treat by the standard hierarchy. First, exact energy transfer rates are calculated across a broad range of temperatures revealing the deviations from the Förster rates. This is followed by computations of the entanglement dynamics in a system of two qubits at low temperature spanning the weak to strong system-bath coupling regimes.

A hybrid stochastic hierarchy equations of motion approach to treat the low temperature dynamics of non-Markovian open quantum systems.

PubMed

Moix, Jeremy M; Cao, Jianshu

2013-10-07

The hierarchical equations of motion technique has found widespread success as a tool to generate the numerically exact dynamics of non-Markovian open quantum systems. However, its application to low temperature environments remains a serious challenge due to the need for a deep hierarchy that arises from the Matsubara expansion of the bath correlation function. Here we present a hybrid stochastic hierarchical equation of motion (sHEOM) approach that alleviates this bottleneck and leads to a numerical cost that is nearly independent of temperature. Additionally, the sHEOM method generally converges with fewer hierarchy tiers allowing for the treatment of larger systems. Benchmark calculations are presented on the dynamics of two level systems at both high and low temperatures to demonstrate the efficacy of the approach. Then the hybrid method is used to generate the exact dynamics of systems that are nearly impossible to treat by the standard hierarchy. First, exact energy transfer rates are calculated across a broad range of temperatures revealing the deviations from the Förster rates. This is followed by computations of the entanglement dynamics in a system of two qubits at low temperature spanning the weak to strong system-bath coupling regimes.

Discrete Adjoint Sensitivity Analysis of Hybrid Dynamical Systems With Switching [Discrete Adjoint Sensitivity Analysis of Hybrid Dynamical Systems

DOE PAGES

Zhang, Hong; Abhyankar, Shrirang; Constantinescu, Emil; ...

2017-01-24

Sensitivity analysis is an important tool for describing power system dynamic behavior in response to parameter variations. It is a central component in preventive and corrective control applications. The existing approaches for sensitivity calculations, namely, finite-difference and forward sensitivity analysis, require a computational effort that increases linearly with the number of sensitivity parameters. In this paper, we investigate, implement, and test a discrete adjoint sensitivity approach whose computational effort is effectively independent of the number of sensitivity parameters. The proposed approach is highly efficient for calculating sensitivities of larger systems and is consistent, within machine precision, with the function whosemore » sensitivity we are seeking. This is an essential feature for use in optimization applications. Moreover, our approach includes a consistent treatment of systems with switching, such as dc exciters, by deriving and implementing the adjoint jump conditions that arise from state-dependent and time-dependent switchings. The accuracy and the computational efficiency of the proposed approach are demonstrated in comparison with the forward sensitivity analysis approach. In conclusion, this paper focuses primarily on the power system dynamics, but the approach is general and can be applied to hybrid dynamical systems in a broader range of fields.« less

Discrete Adjoint Sensitivity Analysis of Hybrid Dynamical Systems With Switching [Discrete Adjoint Sensitivity Analysis of Hybrid Dynamical Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Hong; Abhyankar, Shrirang; Constantinescu, Emil

Sensitivity analysis is an important tool for describing power system dynamic behavior in response to parameter variations. It is a central component in preventive and corrective control applications. The existing approaches for sensitivity calculations, namely, finite-difference and forward sensitivity analysis, require a computational effort that increases linearly with the number of sensitivity parameters. In this paper, we investigate, implement, and test a discrete adjoint sensitivity approach whose computational effort is effectively independent of the number of sensitivity parameters. The proposed approach is highly efficient for calculating sensitivities of larger systems and is consistent, within machine precision, with the function whosemore » sensitivity we are seeking. This is an essential feature for use in optimization applications. Moreover, our approach includes a consistent treatment of systems with switching, such as dc exciters, by deriving and implementing the adjoint jump conditions that arise from state-dependent and time-dependent switchings. The accuracy and the computational efficiency of the proposed approach are demonstrated in comparison with the forward sensitivity analysis approach. In conclusion, this paper focuses primarily on the power system dynamics, but the approach is general and can be applied to hybrid dynamical systems in a broader range of fields.« less

Supergranulation and multiscale flows in the solar photosphere. Global observations vs. a theory of anisotropic turbulent convection

NASA Astrophysics Data System (ADS)

Rincon, F.; Roudier, T.; Schekochihin, A. A.; Rieutord, M.

2017-03-01

The Sun provides us with the only spatially well-resolved astrophysical example of turbulent thermal convection. While various aspects of solar photospheric turbulence, such as granulation (one-Megameter horizontal scale), are well understood, the questions of the physical origin and dynamical organization of larger-scale flows, such as the 30-Megameters supergranulation and flows deep in the solar convection zone, remain largely open in spite of their importance for solar dynamics and magnetism. Here, we present a new critical global observational characterization of multiscale photospheric flows and subsequently formulate an anisotropic extension of the Bolgiano-Obukhov theory of hydrodynamic stratified turbulence that may explain several of their distinctive dynamical properties. Our combined analysis suggests that photospheric flows in the horizontal range of scales between supergranulation and granulation have a typical vertical correlation scale of 2.5 to 4 Megameters and operate in a strongly anisotropic, self-similar, nonlinear, buoyant dynamical regime. While the theory remains speculative at this stage, it lends itself to quantitative comparisons with future high-resolution acoustic tomography of subsurface layers and advanced numerical models. Such a validation exercise may also lead to new insights into the asymptotic dynamical regimes in which other, unresolved turbulent anisotropic astrophysical fluid systems supporting waves or instabilities operate.

Multivariate moment closure techniques for stochastic kinetic models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lakatos, Eszter, E-mail: e.lakatos13@imperial.ac.uk; Ale, Angelique; Kirk, Paul D. W.

2015-09-07

Stochastic effects dominate many chemical and biochemical processes. Their analysis, however, can be computationally prohibitively expensive and a range of approximation schemes have been proposed to lighten the computational burden. These, notably the increasingly popular linear noise approximation and the more general moment expansion methods, perform well for many dynamical regimes, especially linear systems. At higher levels of nonlinearity, it comes to an interplay between the nonlinearities and the stochastic dynamics, which is much harder to capture correctly by such approximations to the true stochastic processes. Moment-closure approaches promise to address this problem by capturing higher-order terms of the temporallymore » evolving probability distribution. Here, we develop a set of multivariate moment-closures that allows us to describe the stochastic dynamics of nonlinear systems. Multivariate closure captures the way that correlations between different molecular species, induced by the reaction dynamics, interact with stochastic effects. We use multivariate Gaussian, gamma, and lognormal closure and illustrate their use in the context of two models that have proved challenging to the previous attempts at approximating stochastic dynamics: oscillations in p53 and Hes1. In addition, we consider a larger system, Erk-mediated mitogen-activated protein kinases signalling, where conventional stochastic simulation approaches incur unacceptably high computational costs.« less

Reproductive and resource benefits to large female body size in a mammal with female-biased sexual size dimorphism

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fokidis, H.B., T.S. Risch and T.C. Glenn

Factors underlying the evolution of female-biased sexual size dimorphism in mammals are poorly understood. In an effort to better understand these factors we tested whether larger female southern flying squirrels, Glaucomys volans, gained reproductive advantages (larger litters or more male mates) and direct resource benefits, such as larger home ranges or access to more food (i.e. mast-producing trees). As dimorphism can vary with age in precocial breeding species, we compared females during their first reproduction and during a subsequent breeding attempt. Females were not significantly larger or heavier than males at first reproduction, but became about 7% heavier and 22%more » larger than males at subsequent breeding. Larger females produced larger litters and had home ranges containing a greater proportion of upland hardwood trees. Female body size was not associated with either multiple male mating or home range size, but females with larger home ranges had higher indexes of body condition. Females in precocial breeding flying squirrels initiate reproduction before sexual size dimorphism is evident, and thus, may be allocating resources to both reproduction and growth simultaneously, or delaying growth entirely. Larger females produce more pups and have access to more food resources. Thus, selection for increased female size may partly explain how female-biased sexual size dimorphism is maintained in this species.« less

Subpicosecond surface dynamics in genomic DNA from in vitro-grown plant species: a SERS assessment.

PubMed

Muntean, Cristina M; Bratu, Ioan; Leopold, Nicolae; Morari, Cristian; Buimaga-Iarinca, Luiza; Purcaru, Monica A P

2015-09-07

In this work the surface-enhanced Raman total half band widths of seven genomic DNAs from leaves of chrysanthemum (Dendranthema grandiflora Ramat.), common sundew (Drosera rotundifolia L.), edelweiss (Leontopodium alpinum Cass), Epilobium hirsutum L., Hypericum richeri ssp. transsilvanicum (Čelak) Ciocârlan, rose (Rosa x hybrida L.) and redwood (Sequoia sempervirens D. Don. Endl.) have been measured. We have shown that surface-enhanced Raman spectroscopy (SERS) can be used to study the fast subpicosecond dynamics of DNA in the proximity of a metallic surface. The dependencies of the total half band widths and the global relaxation times, on the DNA molecular subgroup structure and on the type of genomic DNA, are reported. In our study, the full widths at half-maximum (FWHMs) for the SERS bands of genomic DNAs from different leaf tissues are typically in the wavenumber range from 15 to 55 cm(-1). Besides, it can be observed that molecular relaxation processes studied in this work have a global relaxation time smaller than 0.71 ps and larger than 0.19 ps. A comparison between different ranges of FT-Raman and SERS band parameters, respectively, corresponding to DNA extracted from leaf tissues is given. It is shown that the interaction between DNA and a metallic surface has the potential to lead to a shortening of the global relaxation times, as compared with molecular dynamics in solution. We have found that the surface dynamics of molecular subgroups in plant DNA is, in some cases, about two times faster than the solution dynamics of nucleic acids. This can be rationalized in a qualitative manner by invoking the complex landscape of the interaction energy between the molecule and the silver surface.

Role of muscle mass and mode of contraction in circulatory responses to exercise

NASA Technical Reports Server (NTRS)

Lewis, S. F.; Snell, P. G.; Pettinger, W. A.; Blomqvist, C. G.; Taylor, W. F.; Hamra, M.; Graham, R. M.

1985-01-01

The roles of the mode of contraction (dynamic or static) and active muscle mass in determining the cardiovascular response to exercise has been investigated experimentally in six normal men. Exercise consisted of static handgrip and dynamic handgrip exercise, and static and dynamic knee extension for a period of six minutes. Observed increases in mean arterial pressure after exercise were similar for each mode of contraction, but larger for knee extension than handgrip exercise. Cardiac output increased more for dynamic than for static exercise and for each mode more for knee exercise than for handgrip exercise. Systemic resistance was found to be lower for dynamic than for static exercise, and to decrease from resisting levels by about one third during dynamic knee extension. It is shown that the magnitude of cardiovascular response is related to active muscle mass, but is independent of the contraction mode. Equalization of cardiovascular response was achieved by proportionately larger increases in cardiac output during dynamic exercise. The complete experimental results are given in a table.

Concurrent Spectral and Separation-space Views of Small-scale Anisotropy in Rotating Turbulence

NASA Astrophysics Data System (ADS)

Vallefuoco, D.; Godeferd, F. S.; Naso, A.

2017-12-01

Rotating turbulence is central in astrophysical, geophysical and industrial flows. A background rotation about a fixed axis introduces significant anisotropy in the turbulent dynamics through both linear and nonlinear mechanisms. The flow regime can be characterized by two independent non-dimensional parameters, e.g. the Reynolds and Rossby numbers or, equivalently, the ratio of the integral scale to the Kolmogorov scale L/η, and the ratio rZ/L, where rZ=√(ɛ/Ω3) is the Zeman scale, ɛ is the mean dissipation and Ω is the rotation rate. rZ is the scale at which the inertial timescale equals the rotation timescale. According to classical dimensional arguments (Zeman 1994), if the Reynolds number is large, scales much larger than rZ are mainly affected by rotation while scales much smaller than rZare dominated by the nonlinear dynamics and are expected to recover isotropy. In this work, we characterize incompressible rotating turbulence scale- and direction-dependent anisotropy through high Reynolds number pseudo-spectral forced DNS. We first focus on energy direction-dependent spectra in Fourier space: we show that a high anisotropy small wavenumber range and a low anisotropy large wavenumber range arise. Importantly, anisotropy arises even at scales much smaller than rZ and no small-scale isotropy is observed in our DNS, in contrast with previous numerical results (Delache et al. 2014, Mininni et al. 2012) but in agreement with experiments (Lamriben et al. 2011). Then, we estimate the value of the threshold wavenumber kT between these two anisotropic ranges for a large number of runs, and show that it corresponds to the scale at which dissipative effects are of the same order as those of rotation. Therefore, in the asymptotic inviscid limit, kT tends to infinity and only the low-wavenumber anisotropic range should persist. In this range anisotropy decreases with wavenumber, which is consistent with the classical Zeman argument. In addition, anisotropy at scales much smaller than rZ can be detected in physical space too, in particular for the third-order two-point vector moment F=<δu2 δu>, where δu is the velocity increment. We find the expected inertial trends for F (Galtier 2009) at scales sufficiently larger than the dissipative scale, while smaller scales exhibit qualitatively opposite anisotropic features.

Small-scale sediment transport patterns and bedform morphodynamics: New insights from high-resolution multibeam bathymetry

USGS Publications Warehouse

Barnard, P.L.; Erikson, L.H.; Kvitek, R.G.

2011-01-01

New multibeam echosounder and processing technologies yield sub-meter-scale bathymetric resolution, revealing striking details of bedform morphology that are shaped by complex boundary-layer flow dynamics at a range of spatial and temporal scales. An inertially aided post processed kinematic (IAPPK) technique generates a smoothed best estimate trajectory (SBET) solution to tie the vessel motion-related effects of each sounding directly to the ellipsoid, significantly reducing artifacts commonly found in multibeam data, increasing point density, and sharpening seafloor features. The new technique was applied to a large bedform field in 20-30 m water depths in central San Francisco Bay, California (USA), revealing bedforms that suggest boundary-layer flow deflection by the crests where 12-m-wavelength, 0.2-m-amplitude bedforms are superimposed on 60-m-wavelength, 1-m-amplitude bedforms, with crests that often were strongly oblique (approaching 90??) to the larger features on the lee side, and near-parallel on the stoss side. During one survey in April 2008, superimposed bedform crests were continuous between the crests of the larger features, indicating that flow detachment in the lee of the larger bedforms is not always a dominant process. Assessment of bedform crest peakedness, asymmetry, and small-scale bedform evolution between surveys indicates the impact of different flow regimes on the entire bedform field. This paper presents unique fine-scale imagery of compound and superimposed bedforms, which is used to (1) assess the physical forcing and evolution of a bedform field in San Francisco Bay, and (2) in conjunction with numerical modeling, gain a better fundamental understanding of boundary-layer flow dynamics that result in the observed superimposed bedform orientation. ?? 2011 Springer-Verlag (outside the USA).

Small-scale sediment transport patterns and bedform morphodynamics: New insights from high resolution multibeam bathymetry

USGS Publications Warehouse

Barnard, Patrick L.; Erikson, Li H.; Rubin, David M.; Kvitek, Rikk G.

2011-01-01

New multibeam echosounder and processing technologies yield sub-meter-scale bathymetric resolution, revealing striking details of bedform morphology that are shaped by complex boundary-layer flow dynamics at a range of spatial and temporal scales. An inertially aided post processed kinematic (IAPPK) technique generates a smoothed best estimate trajectory (SBET) solution to tie the vessel motion-related effects of each sounding directly to the ellipsoid, significantly reducing artifacts commonly found in multibeam data, increasing point density, and sharpening seafloor features. The new technique was applied to a large bedform field in 20–30 m water depths in central San Francisco Bay, California (USA), revealing bedforms that suggest boundary-layer flow deflection by the crests where 12-m-wavelength, 0.2-m-amplitude bedforms are superimposed on 60-m-wavelength, 1-m-amplitude bedforms, with crests that often were strongly oblique (approaching 90°) to the larger features on the lee side, and near-parallel on the stoss side. During one survey in April 2008, superimposed bedform crests were continuous between the crests of the larger features, indicating that flow detachment in the lee of the larger bedforms is not always a dominant process. Assessment of bedform crest peakedness, asymmetry, and small-scale bedform evolution between surveys indicates the impact of different flow regimes on the entire bedform field. This paper presents unique fine-scale imagery of compound and superimposed bedforms, which is used to (1) assess the physical forcing and evolution of a bedform field in San Francisco Bay, and (2) in conjunction with numerical modeling, gain a better fundamental understanding of boundary-layer flow dynamics that result in the observed superimposed bedform orientation.

Comparisons between gouge and bare surface friction of serpentinite at seismic slip velocities: Implications for dynamic weakening of gouge-bearing faults

NASA Astrophysics Data System (ADS)

Proctor, B.; Mitchell, T. M.; Hirth, G.; Goldsby, D. L.; Di Toro, G.; Zorzi, F.

2013-12-01

High-velocity friction (HVF) experiments on bare rock surfaces have revealed various dynamic weakening processes (e.g., flash weakening, gel weakening, melt lubrication) that likely play a fundamental role in coseismic fault weakening. However, faults generally contain a thin layer of gouge separating the solid wallrocks, thus it is important to understand how the presence of gouge modifies the efficiency of these weakening processes at seismic slip rates. We explored the frictional behavior of bare surfaces and powdered samples of an antigorite-rich serpentinite (ARS) and a lizardite-rich serpentinite (LRS) at earthquake slip rates. HVF experiments were conducted with slip displacements ranging from ~0.5 to 2m, at velocities ranging from 0.002m/s to 6.5 m/s, and with normal stresses ranging from 2-22 MPa for gouge and 5-100MPa for bare surfaces. Our results demonstrate that the friction coefficient (μ) of powdered serpentine is significantly larger than that of bare surfaces under otherwise identical conditions. Bare surface friction decreases over a weakening distance of a few centimeters to a nominally steady-state value of ~0.1 at velocities greater than 0.1m/s. The nominal steady-state friction decreases non-linearly with increasing normal stress from 0.14 to 0.045 at 5 and ~100MPa respectfully at a slip velocity of 1m/s. Additionally, the recovery of frictional strength during deceleration depends on total displacement; samples slipped for ~50mm recover faster than samples slipped for ~0.5m. Microstructural analysis of bare surfaces deformed at the highest normal stresses revealed translucent glass-like material on the slip surfaces and XRD analysis of wear material revealed an increasing presence of olivine and enstatite with increasing normal stress. In contrast, gouge requires an order of magnitude higher velocity than bare surfaces to induce frictional weakening, has a larger weakening distance and higher steady state friction values for equivalent deformation conditions. Furthermore, we observe a strong normal stress dependence of the nominal steady state friction and the weakening distance of ARS and LRS gouge from 0.51 to 0.39 and from 25-10cm at 4MPa and 22MPa, respectfully, for at a slip velocity of 1m/s. Strain was localized onto a shear surface in the range of 100-300 microns wide in all gouge samples deformed at >10cm/s and XRD analyses revealed the presence of olivine and enstatite in samples with the most weakening and none in samples with no weakening. Our results indicate that dynamic weakening occurs in gouge at low normal stress in response to strain localization and shear heating of the slip surface. However, because more initial displacement is required to localize strain, weakening initiates at higher velocities and after larger weakening distances than bare surfaces. At higher normal stress, localization occurs after less displacement and the differences between gouge and bare-surface friction diminish; extrapolation of our data suggests that the behavior of serpentine gouge will approach that of bare surfaces at normal stresses ≥60 MPa.

The relative viscosity of NaNO 3 and NaNO 2 aqueous solutions

DOE PAGES

Reynolds, Jacob G.; Mauss, Billie M.; Daniel, Richard C.

2018-05-09

In aqueous solution, both nitrate and nitrite are planar, monovalent, and have the same elements but different sizes and charge densities. Comparing the viscosity of NaNO 2 and NaNO 3 aqueous solutions provides an opportunity to determine the relative importance of anion size versus strength of anion interaction with water. The viscosity of aqueous NaNO 2 and NaNO 3 were measured over a temperature and concentration range relevant to nuclear waste processing. The viscosity of NaNO 2 solutions was consistently larger than NaNO 3 under all conditions, even though nitrate is larger than nitrite. This was interpreted in terms ofmore » quantum mechanical charge field molecular dynamics calculations that indicate that nitrite forms more and stronger hydrogen bonds with water per oxygen atom than nitrate. Furthermore, these hydrogen bonds inhibit rotational motion required for fluid flow, thus increasing the nitrite solution viscosity relative to that of an equivalent nitrate solution.« less

The relative viscosity of NaNO 3 and NaNO 2 aqueous solutions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reynolds, Jacob G.; Mauss, Billie M.; Daniel, Richard C.

In aqueous solution, both nitrate and nitrite are planar, monovalent, and have the same elements but different sizes and charge densities. Comparing the viscosity of NaNO 2 and NaNO 3 aqueous solutions provides an opportunity to determine the relative importance of anion size versus strength of anion interaction with water. The viscosity of aqueous NaNO 2 and NaNO 3 were measured over a temperature and concentration range relevant to nuclear waste processing. The viscosity of NaNO 2 solutions was consistently larger than NaNO 3 under all conditions, even though nitrate is larger than nitrite. This was interpreted in terms ofmore » quantum mechanical charge field molecular dynamics calculations that indicate that nitrite forms more and stronger hydrogen bonds with water per oxygen atom than nitrate. Furthermore, these hydrogen bonds inhibit rotational motion required for fluid flow, thus increasing the nitrite solution viscosity relative to that of an equivalent nitrate solution.« less

The Zero Boil-Off Tank Experiment Contributions to the Development of Cryogenic Fluid Management

NASA Technical Reports Server (NTRS)

Chato, David J.; Kassemi, Mohammad

2015-01-01

The Zero Boil-Off Technology (ZBOT) Experiment involves performing a small scale ISS experiment to study tank pressurization and pressure control in microgravity. The ZBOT experiment consists of a vacuum jacketed test tank filled with an inert fluorocarbon simulant liquid. Heaters and thermo-electric coolers are used in conjunction with an axial jet mixer flow loop to study a range of thermal conditions within the tank. The objective is to provide a high quality database of low gravity fluid motions and thermal transients which will be used to validate Computational Fluid Dynamic (CFD) modeling. This CFD can then be used in turn to predict behavior in larger systems with cryogens. This paper will discuss the current status of the ZBOT experiment as it approaches its flight to installation on the International Space Station, how its findings can be scaled to larger and more ambitious cryogenic fluid management experiments, as well as ideas for follow-on investigations using ZBOT like hardware to study other aspects of cryogenic fluid management.

The void spectrum in two-dimensional numerical simulations of gravitational clustering

NASA Technical Reports Server (NTRS)

Kauffmann, Guinevere; Melott, Adrian L.

1992-01-01

An algorithm for deriving a spectrum of void sizes from two-dimensional high-resolution numerical simulations of gravitational clustering is tested, and it is verified that it produces the correct results where those results can be anticipated. The method is used to study the growth of voids as clustering proceeds. It is found that the most stable indicator of the characteristic void 'size' in the simulations is the mean fractional area covered by voids of diameter d, in a density field smoothed at its correlation length. Very accurate scaling behavior is found in power-law numerical models as they evolve. Eventually, this scaling breaks down as the nonlinearity reaches larger scales. It is shown that this breakdown is a manifestation of the undesirable effect of boundary conditions on simulations, even with the very large dynamic range possible here. A simple criterion is suggested for deciding when simulations with modest large-scale power may systematically underestimate the frequency of larger voids.

Influence of carrier density on the electronic cooling channels of bilayer graphene

NASA Astrophysics Data System (ADS)

Limmer, T.; Houtepen, A. J.; Niggebaum, A.; Tautz, R.; Da Como, E.

2011-09-01

We study the electronic cooling dynamics in a single flake of bilayer graphene by femtosecond transient absorption probing the photon-energy range 0.25-1.3 eV. From the transients, we extract the carrier cooling curves for different initial temperatures and densities of the photoexcited electrons and holes. Two regimes of carrier cooling, dominated by optical and acoustic phonons emission, are clearly identified. For increasing carrier density, the crossover between the two regimes occurs at larger carrier temperatures, since cooling via optical phonons experiences a bottleneck. Acoustic phonons, which are less sensitive to saturation, show an increasing contribution at high density.

Towards a perceptive understanding of size in cellular biology.

PubMed

Zoppè, Monica

2017-06-29

Cells are minute-typically too small to be seen by the human eye. Even so, the cellular world encompasses a range of scales, from roughly a tenth of a nanometer (10 -10 m) to a millimeter (10 -3 m) or larger, spanning seven orders of magnitude or more. Because they are so far from our experience, it is difficult for us to envision such scales. To help our imagination grasp such dimensions, I propose the adoption of a 'perceptive scale' that can facilitate a more direct experience of cellular sizes. From this, as I argue below, will stem a new perception also of biological shape, cellular space and dynamic processes.

Conductivity of molten sodium chloride in an arbitrarily weak dc electric field.

PubMed

Delhommelle, Jerome; Cummings, Peter T; Petravic, Janka

2005-09-15

We use nonequilibrium molecular-dynamics (NEMD) simulations to characterize the response of a fluid subjected to an electric field. We focus on the response for very weak fields. Fields accessible by conventional NEMD methods are typically of the order of 10(9) V m(-1), i.e., several orders of magnitude larger than those typically used in experiments. Using the transient time-correlation function, we show how NEMD simulations can be extended to study systems subjected to a realistic dc electric field. We then apply this approach to study the response of molten sodium chloride for a wide range of dc electric fields.

Achieving large dynamic range control of gene expression with a compact RNA transcription–translation regulator

PubMed Central

2017-01-01

Abstract RNA transcriptional regulators are emerging as versatile components for genetic network construction. However, these regulators suffer from incomplete repression in their OFF state, making their dynamic range less than that of their protein counterparts. This incomplete repression causes expression leak, which impedes the construction of larger synthetic regulatory networks as leak propagation can interfere with desired network function. To address this, we demonstrate how naturally derived antisense RNA-mediated transcriptional regulators can be configured to regulate both transcription and translation in a single compact RNA mechanism that functions in Escherichia coli. Using in vivo gene expression assays, we show that a combination of transcriptional termination and ribosome binding site sequestration increases repression from 85% to 98%, or activation from 10-fold to over 900-fold, in response to cognate antisense RNAs. We also show that orthogonal repressive versions of this mechanism can be created through engineering minimal antisense RNAs. Finally, to demonstrate the utility of this mechanism, we use it to reduce network leak in an RNA-only cascade. We anticipate these regulators will find broad use as synthetic biology moves beyond parts engineering to the design and construction of more sophisticated regulatory networks. PMID:28387839

The Focusing Optics X-ray Solar Imager (FOXSI)

NASA Astrophysics Data System (ADS)

Krucker, S.

2011-12-01

The Focusing Optics X-ray Solar Imager (FOXSI) is a NASA Low Cost Access to Space sounding rocket payload that will launch in early 2012. A larger sensitivity and dynamic range than currently available are needed in order to image faint X-rays from electron beams in the tenuous corona, particularly those near the coronal acceleration region and those that escape into interplanetary space. FOXSI combines nested, grazing-incidence replicated optics with double-sided silicon strip detectors to achieve a dynamic range of >100 and a sensitivity 100 times that of RHESSI. Advances in the fabrication and assembly of the optics at the NASA Marshall Space Flight Center provide a spatial resolution of 8 arcseconds (FWHM), while the silicon detectors, developed by the Astro-H team at ISAS/JAXA, offer an energy resolution of 0.4 keV. FOXSI's first flight will conduct a search for nonthermal electrons in the quiet Sun, possibly related to nanoflares. FOXSI will serve as a pathfinder for future space-based solar hard X-ray spectroscopic imagers, which will be able to image nonthermal electrons in flare acceleration sites and provide quantitative measurements such as energy spectra, densities, and energy content in accelerated electrons.

The Focusing Optics X-ray Solar Imager

NASA Astrophysics Data System (ADS)

Glesener, Lindsay; Krucker, S.; Christe, S.; Ramsey, B.; Ishikawa, S.; Takahashi, T.; Saito, S.

2011-05-01

The Focusing Optics X-ray Solar Imager (FOXSI) is a NASA Low Cost Access to Space sounding rocket payload that will launch in late 2011. A larger sensitivity and dynamic range than currently available are needed in order to image faint X-rays from electron beams in the tenuous corona, particularly those near any coronal acceleration region and those that escape into interplanetary space. FOXSI combines fast-replication, nested, grazing-incidence optics with double-sided silicon strip detectors to achieve a dynamic range of >100 and a sensitivity 100 times that of RHESSI. Advances in the fabrication and assembly of the optics at the NASA Marshall Space Flight Center provide a spatial resolution of 8 arcseconds, while the silicon detectors, developed by the Astro-H team at ISAS/JAXA, offer an energy resolution of 0.5 keV. FOXSI's first flight will be used to conduct a search for X-ray emission from nonthermal electron beams in quiet Sun nanoflares. In addition, FOXSI will serve as a pathfinder for future space-based solar hard X-ray spectroscopic imagers, which will be able to image nonthermal electrons in flare acceleration sites and provide quantitative measurements such as energy spectra, densities, and energy content in accelerated electrons.

Miniaturized Ion and Neutral Mass Spectrometer for CubeSat Atmospheric Measurements

NASA Technical Reports Server (NTRS)

Rodriguez, M.; Paschalidis, N.; Jones, S.; Sittler, E.; Chornay, D.; Uribe, P.; Cameron, T.

2016-01-01

To increase the number of single point in-situ measurements of thermosphere and exosphere ion and neutral composition and density, miniaturized instrumentation is in high demand to take advantage of the increasing platform opportunities available in the smallsat/cubesat industry. The INMS (Ion-Neutral Mass Spectrometer) addresses this need by providing simultaneous measurements of both the neutral and ion environment, essentially providing two instruments in one compact model. The 1.3U volume, 570 gram, 1.8W nominal power INMS instrument makes implementation into cubesat designs (3U and above) practical and feasible. With high dynamic range (0.1-500eV), mass dynamic range of 1-40amu, sharp time resolution (0.1s), and mass resolution of MdM16, the INMS instrument addresses the atmospheric science needs that otherwise would have required larger more expensive instrumentation. INMS-v1 (version 1) launched on Exocube (CalPoly 3U cubesat) in 2015 and INMS-v2 (version 2) is scheduled to launch on Dellingr (GSFC 6U cubesat) in 2017. New versions of INMS are currently being developed to increase and add measurement capabilities, while maintaining its smallsat/cubesat form.

A fast integrated mobility spectrometer for rapid measurement of sub-micrometer aerosol size distribution, Part II: Experimental characterization

DOE PAGES

Wang, Jian; Pikridas, Michael; Pinterich, Tamara; ...

2017-06-08

A Fast Integrated Mobility Spectrometer (FIMS) with a wide dynamic size range has been developed for rapid aerosol size distribution measurements. The design and model evaluation of the FIMS are presented in the preceding paper (Paper I), and this paper focuses on the experimental characterization of the FIMS. Monodisperse aerosol with diameter ranging from 8 to 600 nm was generated using Differential Mobility Analyzer (DMA), and was measured by the FIMS in parallel with a Condensation Particle Counter (CPC). The mean particle diameter measured by the FIMS is in good agreement with the DMA centroid diameter. Comparison of the particlemore » concentrations measured by the FIMS and CPC indicates the FIMS detection efficiency is essentially 100% for particles with diameters of 8 nm or larger. For particles smaller than 20 nm or larger than 200 nm, FIMS transfer function and resolution can be well represented by the calculated ones based on simulated particle trajectories in the FIMS. For particles between 20 and 200 nm, the FIMS transfer function is boarder than the calculated, likely due to non-ideality of the electric field, including edge effects near the end of the electrode, which are not represented by the 2-D electric field used to simulate particle trajectories.« less

A fast integrated mobility spectrometer for rapid measurement of sub-micrometer aerosol size distribution, Part II: Experimental characterization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Jian; Pikridas, Michael; Pinterich, Tamara

A Fast Integrated Mobility Spectrometer (FIMS) with a wide dynamic size range has been developed for rapid aerosol size distribution measurements. The design and model evaluation of the FIMS are presented in the preceding paper (Paper I), and this paper focuses on the experimental characterization of the FIMS. Monodisperse aerosol with diameter ranging from 8 to 600 nm was generated using Differential Mobility Analyzer (DMA), and was measured by the FIMS in parallel with a Condensation Particle Counter (CPC). The mean particle diameter measured by the FIMS is in good agreement with the DMA centroid diameter. Comparison of the particlemore » concentrations measured by the FIMS and CPC indicates the FIMS detection efficiency is essentially 100% for particles with diameters of 8 nm or larger. For particles smaller than 20 nm or larger than 200 nm, FIMS transfer function and resolution can be well represented by the calculated ones based on simulated particle trajectories in the FIMS. For particles between 20 and 200 nm, the FIMS transfer function is boarder than the calculated, likely due to non-ideality of the electric field, including edge effects near the end of the electrode, which are not represented by the 2-D electric field used to simulate particle trajectories.« less

Ranges of Cervical Intervertebral Disc Deformation During an In Vivo Dynamic Flexion–Extension of the Neck

PubMed Central

Yu, Yan; Mao, Haiqing; Li, Jing-Sheng; Tsai, Tsung-Yuan; Cheng, Liming; Wood, Kirkham B.; Li, Guoan; Cha, Thomas D.

2017-01-01

While abnormal loading is widely believed to cause cervical spine disc diseases, in vivo cervical disc deformation during dynamic neck motion has not been well delineated. This study investigated the range of cervical disc deformation during an in vivo functional flexion–extension of the neck. Ten asymptomatic human subjects were tested using a combined dual fluoroscopic imaging system (DFIS) and magnetic resonance imaging (MRI)-based three-dimensional (3D) modeling technique. Overall disc deformation was determined using the changes of the space geometry between upper and lower endplates of each intervertebral segment (C3/4, C4/5, C5/6, and C6/7). Five points (anterior, center, posterior, left, and right) of each disc were analyzed to examine the disc deformation distributions. The data indicated that between the functional maximum flexion and extension of the neck, the anterior points of the discs experienced large changes of distraction/compression deformation and shear deformation. The higher level discs experienced higher ranges of disc deformation. No significant difference was found in deformation ranges at posterior points of all the discs. The data indicated that the range of disc deformation is disc level dependent and the anterior region experienced larger changes of deformation than the center and posterior regions, except for the C6/7 disc. The data obtained from this study could serve as baseline knowledge for the understanding of the cervical spine disc biomechanics and for investigation of the biomechanical etiology of disc diseases. These data could also provide insights for development of motion preservation surgeries for cervical spine. PMID:28334358

Shoulder Dynamic Control Ratio and Rotation Range of Motion in Female Junior Elite Handball Players and Controls.

PubMed

van Cingel, Robert; Habets, Bas; Willemsen, Linn; Staal, Bart

2018-03-01

To compare glenohumeral range of motion and shoulder rotator muscle strength in healthy female junior elite handball players and controls. Cross-sectional case-control study. Sports medical center. Forty elite female handball players and 30 controls active in nonoverhead sports participated in this study. Passive external rotator (ER), internal rotator (IR), and total range of motion (TROM) of the dominant and nondominant arm were examined with a goniometer. An isokinetic dynamometer was used to evaluate concentric and eccentric rotator muscle strength at 60 and 120 degrees/s with dynamic control ratio (DCR = ERecc:IRcon) as the main outcome parameter. Except for the ER range of motion in the nondominant arm, no significant differences were found between groups for IR, ER of the dominant arm, and the TROM. Within the handball group, the side-to-side difference for IR of the dominant arm was -1.4 degrees. The ER and the TROM of the dominant arm were significantly larger, 6.3 and 4.9 degrees, respectively. For both groups, the DCR values were above 1 and no significant differences were found between the dominant and nondominant arm. The DCR values in the handball group were significantly lower than in the control group. Based on the adopted definitions for muscle imbalance, glenohumeral internal range of motion deficit and TROM deficit our elite female handball players seem not at risk for shoulder injuries. Prospective studies are needed to support the belief that a DCR below 1 places the shoulder at risk for injury.

Ranges of Cervical Intervertebral Disc Deformation During an In Vivo Dynamic Flexion-Extension of the Neck.

PubMed

Yu, Yan; Mao, Haiqing; Li, Jing-Sheng; Tsai, Tsung-Yuan; Cheng, Liming; Wood, Kirkham B; Li, Guoan; Cha, Thomas D

2017-06-01

While abnormal loading is widely believed to cause cervical spine disc diseases, in vivo cervical disc deformation during dynamic neck motion has not been well delineated. This study investigated the range of cervical disc deformation during an in vivo functional flexion-extension of the neck. Ten asymptomatic human subjects were tested using a combined dual fluoroscopic imaging system (DFIS) and magnetic resonance imaging (MRI)-based three-dimensional (3D) modeling technique. Overall disc deformation was determined using the changes of the space geometry between upper and lower endplates of each intervertebral segment (C3/4, C4/5, C5/6, and C6/7). Five points (anterior, center, posterior, left, and right) of each disc were analyzed to examine the disc deformation distributions. The data indicated that between the functional maximum flexion and extension of the neck, the anterior points of the discs experienced large changes of distraction/compression deformation and shear deformation. The higher level discs experienced higher ranges of disc deformation. No significant difference was found in deformation ranges at posterior points of all the discs. The data indicated that the range of disc deformation is disc level dependent and the anterior region experienced larger changes of deformation than the center and posterior regions, except for the C6/7 disc. The data obtained from this study could serve as baseline knowledge for the understanding of the cervical spine disc biomechanics and for investigation of the biomechanical etiology of disc diseases. These data could also provide insights for development of motion preservation surgeries for cervical spine.

Hemoglobin Dynamics in Red Blood Cells: Correlation to Body Temperature

PubMed Central

Stadler, A. M.; Digel, I.; Artmann, G. M.; Embs, J. P.; Zaccai, G.; Büldt, G.

2008-01-01

A transition in hemoglobin behavior at close to body temperature has been discovered recently by micropipette aspiration experiments on single red blood cells (RBCs) and circular dichroism spectroscopy on hemoglobin solutions. The transition temperature was directly correlated to the body temperatures of a variety of species. In an exploration of the molecular basis for the transition, we present neutron scattering measurements of the temperature dependence of hemoglobin dynamics in whole human RBCs in vivo. The data reveal a change in the geometry of internal protein motions at 36.9°C, at human body temperature. Above that temperature, amino acid side-chain motions occupy larger volumes than expected from normal temperature dependence, indicating partial unfolding of the protein. Global protein diffusion in RBCs was also measured and the findings compared favorably with theoretical predictions for short-time self-diffusion of noncharged hard-sphere colloids. The results demonstrated that changes in molecular dynamics in the picosecond time range and angstrom length scale might well be connected to a macroscopic effect on whole RBCs that occurs at body temperature. PMID:18708462

Spatial heterogeneity in the carrying capacity of sika deer in Japan

PubMed Central

Iijima, Hayato; Ueno, Mayumi

2016-01-01

Abstract Carrying capacity is 1 driver of wildlife population dynamics. Although in previous studies carrying capacity was considered to be a fixed entity, it may differ among locations due to environmental variation. The factors underlying variability in carrying capacity, however, have rarely been examined. Here, we investigated spatial heterogeneity in the carrying capacity of Japanese sika deer ( Cervus nippon ) from 2005 to 2014 in Yamanashi Prefecture, central Japan (mesh with grid cells of 5.5×4.6 km) by state-space modeling. Both carrying capacity and density dependence differed greatly among cells. Estimated carrying capacities ranged from 1.34 to 98.4 deer/km 2 . According to estimated population dynamics, grid cells with larger proportions of artificial grassland and deciduous forest were subject to lower density dependence and higher carrying capacity. We conclude that population dynamics of ungulates may vary spatially through spatial variation in carrying capacity and that the density level for controlling ungulate abundance should be based on the current density level relative to the carrying capacity for each area. PMID:29692470

Gas Bubble Dynamics under Mechanical Vibrations

NASA Astrophysics Data System (ADS)

Mohagheghian, Shahrouz; Elbing, Brian

2017-11-01

The scientific community has a limited understanding of the bubble dynamics under mechanical oscillations due to over simplification of Navier-Stockes equation by neglecting the shear stress tensor and not accounting for body forces when calculating the acoustic radiation force. The current work experimental investigates bubble dynamics under mechanical vibration and resulting acoustic field by measuring the bubble size and velocity using high-speed imaging. The experimental setup consists of a custom-designed shaker table, cast acrylic bubble column, compressed air injection manifold and an optical imaging system. The mechanical vibrations resulted in accelerations between 0.25 to 10 times gravitational acceleration corresponding to frequency and amplitude range of 8 - 22Hz and 1 - 10mm respectively. Throughout testing the void fraction was limited to <5%. The bubble size is larger than resonance size and smaller than acoustic wavelength. The amplitude of acoustic pressure wave was estimated using the definition of Bjerknes force in combination with Rayleigh-Plesset equation. Physical behavior of the system was capture and classified. Bubble size, velocity as well as size and spatial distribution will be presented.

Hemoglobin dynamics in red blood cells: correlation to body temperature.

PubMed

Stadler, A M; Digel, I; Artmann, G M; Embs, J P; Zaccai, G; Büldt, G

2008-12-01

A transition in hemoglobin behavior at close to body temperature has been discovered recently by micropipette aspiration experiments on single red blood cells (RBCs) and circular dichroism spectroscopy on hemoglobin solutions. The transition temperature was directly correlated to the body temperatures of a variety of species. In an exploration of the molecular basis for the transition, we present neutron scattering measurements of the temperature dependence of hemoglobin dynamics in whole human RBCs in vivo. The data reveal a change in the geometry of internal protein motions at 36.9 degrees C, at human body temperature. Above that temperature, amino acid side-chain motions occupy larger volumes than expected from normal temperature dependence, indicating partial unfolding of the protein. Global protein diffusion in RBCs was also measured and the findings compared favorably with theoretical predictions for short-time self-diffusion of noncharged hard-sphere colloids. The results demonstrated that changes in molecular dynamics in the picosecond time range and angstrom length scale might well be connected to a macroscopic effect on whole RBCs that occurs at body temperature.

Modeling the reversible kinetics of neutrophil aggregation under hydrodynamic shear.

PubMed Central

Neelamegham, S; Taylor, A D; Hellums, J D; Dembo, M; Smith, C W; Simon, S I

1997-01-01

Neutrophil emigration into inflamed tissue is mediated by beta 2-integrin and L-selectin adhesion receptors. Homotypic neutrophil aggregation is also dependent on these molecules, and it provides a model system in which to study adhesion dynamics. In the current study we formulated a mathematical model for cellular aggregation in a linear shear field based on Smoluchowski's two-body collision theory. Neutrophil suspensions activated with chemotactic stimulus and sheared in a cone-plate viscometer rapidly aggregate. Over a range of shear rates (400-800 s-1), approximately 90% of the single cells were recruited into aggregates ranging from doublets to groupings larger than sextuplets. The adhesion efficiency fit to these kinetics reached maximum levels of > 70%. Formed aggregates remained intact and resistant to shear up to 120 s, at which time they spontaneously dissociated back to singlets. The rate of cell disaggregation was linearly proportional to the applied shear rate, and it was approximately 60% lower for doublets as compared to larger aggregates. By accounting for the time-dependent changes in adhesion efficiency, disaggregation rate, and the effects of aggregate geometry, we succeeded in predicting the reversible kinetics of aggregation over a wide range of shear rates and cell concentrations. The combination of viscometry with flow cytometry and mathematical analysis as presented here represents a novel approach to differentiating between the effects of hydrodynamics and the intrinsic biological processes that control cell adhesion. Images FIGURE 3 FIGURE 5 PMID:9083659

FAST TRACK COMMUNICATION: Oscillation structures in elastic and electron capture cross sections for H+-H collisions in Debye plasmas

NASA Astrophysics Data System (ADS)

Wu, Y.; Wang, J. G.; Krstic, P. S.; Janev, R. K.

2010-10-01

We find that the number of vibrational states in the ground potential of a H2+ molecular ion embedded in the Debye plasma and the number of Regge oscillations in the resonant charge transfer cross section of the H+ + H collision system in the plasma are quasi-conserved when the Debye radius D is larger than 1.4a0. The elastic and resonant charge transfer processes in the H+ + H collision have been studied in the 0.1 meV-100 eV collision energy range for a wide range of Debye radii using a highly accurate calculation based on the modified ab initio multireference configuration interaction code. Remarkable plasma screening effects have been found in both the molecular structure and the collision dynamics of this system. Shape resonances, Regge and glory oscillations have been found in the integral cross sections in the considered energy range even for strong interaction screening, showing their ubiquitous nature.

Room-temperature photodetection dynamics of single GaN nanowires.

PubMed

González-Posada, F; Songmuang, R; Den Hertog, M; Monroy, E

2012-01-11

We report on the photocurrent behavior of single GaN n-i-n nanowires (NWs) grown by plasma-assisted molecular-beam epitaxy on Si(111). These structures present a photoconductive gain in the range of 10(5)-10(8) and an ultraviolet (350 nm) to visible (450 nm) responsivity ratio larger than 6 orders of magnitude. Polarized light couples with the NW geometry with a maximum photoresponse for polarization along the NW axis. The photocurrent scales sublinearly with optical power, following a I ~ P(β) law (β < 1) in the measured range with β increasing with the measuring frequency. The photocurrent time response remains in the millisecond range, which is in contrast to the persistent (hours) photoconductivity effects observed in two-dimensional photoconductors. The photocurrent is independent of the measuring atmosphere, either in the air or in vacuum. Results are interpreted taking into account the effect of surface states and the total depletion of the NW intrinsic region. © 2011 American Chemical Society

Terahertz quantum-cascade lasers as high-power and wideband, gapless sources for spectroscopy.

PubMed

Röben, Benjamin; Lü, Xiang; Hempel, Martin; Biermann, Klaus; Schrottke, Lutz; Grahn, Holger T

2017-07-10

Terahertz (THz) quantum-cascade lasers (QCLs) are powerful radiation sources for high-resolution and high-sensitivity spectroscopy with a discrete spectrum between 2 and 5 THz as well as a continuous coverage of several GHz. However, for many applications, a radiation source with a continuous coverage of a substantially larger frequency range is required. We employed a multi-mode THz QCL operated with a fast ramped injection current, which leads to a collective tuning of equally-spaced Fabry-Pérot laser modes exceeding their separation. A continuous coverage over 72 GHz at about 4.7 THz was achieved. We demonstrate that the QCL is superior to conventional sources used in Fourier transform infrared spectroscopy in terms of the signal-to-noise ratio as well as the dynamic range by one to two orders of magnitude. Our results pave the way for versatile THz spectroscopic systems with unprecedented resolution and sensitivity across a wide frequency range.

Observations and assessment of forest carbon dynamics following disturbance in North America

Treesearch

S. J. Goetz; B. Bond-Lamberty; B. E. Law; J. A. Hicke; C. Huang; R. A. Houghton; S. McNulty; T. O’Halloran; M. Harmon; A. J. H. Meddens; E. M. Pfeifer; D. Mildrexler; E. S. Kasischke

2012-01-01

Disturbance processes of various types substantially modify ecosystem carbon dynamics both temporally and spatially, and constitute a fundamental part of larger landscape-level dynamics. Forests typically lose carbon for several years to several decades following severe disturbance, but our understanding of the duration and dynamics of post-disturbance forest carbon...

On the existence of the optimal order for wavefunction extrapolation in Born-Oppenheimer molecular dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fang, Jun; Wang, Han, E-mail: wang-han@iapcm.ac.cn; CAEP Software Center for High Performance Numerical Simulation, Beijing

2016-06-28

Wavefunction extrapolation greatly reduces the number of self-consistent field (SCF) iterations and thus the overall computational cost of Born-Oppenheimer molecular dynamics (BOMD) that is based on the Kohn–Sham density functional theory. Going against the intuition that the higher order of extrapolation possesses a better accuracy, we demonstrate, from both theoretical and numerical perspectives, that the extrapolation accuracy firstly increases and then decreases with respect to the order, and an optimal extrapolation order in terms of minimal number of SCF iterations always exists. We also prove that the optimal order tends to be larger when using larger MD time steps ormore » more strict SCF convergence criteria. By example BOMD simulations of a solid copper system, we show that the optimal extrapolation order covers a broad range when varying the MD time step or the SCF convergence criterion. Therefore, we suggest the necessity for BOMD simulation packages to open the user interface and to provide more choices on the extrapolation order. Another factor that may influence the extrapolation accuracy is the alignment scheme that eliminates the discontinuity in the wavefunctions with respect to the atomic or cell variables. We prove the equivalence between the two existing schemes, thus the implementation of either of them does not lead to essential difference in the extrapolation accuracy.« less

Spectral characteristics of background error covariance and multiscale data assimilation

DOE PAGES

Li, Zhijin; Cheng, Xiaoping; Gustafson, Jr., William I.; ...

2016-05-17

The steady increase of the spatial resolutions of numerical atmospheric and oceanic circulation models has occurred over the past decades. Horizontal grid spacing down to the order of 1 km is now often used to resolve cloud systems in the atmosphere and sub-mesoscale circulation systems in the ocean. These fine resolution models encompass a wide range of temporal and spatial scales, across which dynamical and statistical properties vary. In particular, dynamic flow systems at small scales can be spatially localized and temporarily intermittent. Difficulties of current data assimilation algorithms for such fine resolution models are numerically and theoretically examined. Ourmore » analysis shows that the background error correlation length scale is larger than 75 km for streamfunctions and is larger than 25 km for water vapor mixing ratios, even for a 2-km resolution model. A theoretical analysis suggests that such correlation length scales prevent the currently used data assimilation schemes from constraining spatial scales smaller than 150 km for streamfunctions and 50 km for water vapor mixing ratios. Moreover, our results highlight the need to fundamentally modify currently used data assimilation algorithms for assimilating high-resolution observations into the aforementioned fine resolution models. Lastly, within the framework of four-dimensional variational data assimilation, a multiscale methodology based on scale decomposition is suggested and challenges are discussed.« less

Integrated analysis on static/dynamic aeroelasticity of curved panels based on a modified local piston theory

NASA Astrophysics Data System (ADS)

Yang, Zhichun; Zhou, Jian; Gu, Yingsong

2014-10-01

A flow field modified local piston theory, which is applied to the integrated analysis on static/dynamic aeroelastic behaviors of curved panels, is proposed in this paper. The local flow field parameters used in the modification are obtained by CFD technique which has the advantage to simulate the steady flow field accurately. This flow field modified local piston theory for aerodynamic loading is applied to the analysis of static aeroelastic deformation and flutter stabilities of curved panels in hypersonic flow. In addition, comparisons are made between results obtained by using the present method and curvature modified method. It shows that when the curvature of the curved panel is relatively small, the static aeroelastic deformations and flutter stability boundaries obtained by these two methods have little difference, while for curved panels with larger curvatures, the static aeroelastic deformation obtained by the present method is larger and the flutter stability boundary is smaller compared with those obtained by the curvature modified method, and the discrepancy increases with the increasing of curvature of panels. Therefore, the existing curvature modified method is non-conservative compared to the proposed flow field modified method based on the consideration of hypersonic flight vehicle safety, and the proposed flow field modified local piston theory for curved panels enlarges the application range of piston theory.

Increasing Linear Dynamic Range of a CMOS Image Sensor

NASA Technical Reports Server (NTRS)

Pain, Bedabrata

2007-01-01

A generic design and a corresponding operating sequence have been developed for increasing the linear-response dynamic range of a complementary metal oxide/semiconductor (CMOS) image sensor. The design provides for linear calibrated dual-gain pixels that operate at high gain at a low signal level and at low gain at a signal level above a preset threshold. Unlike most prior designs for increasing dynamic range of an image sensor, this design does not entail any increase in noise (including fixed-pattern noise), decrease in responsivity or linearity, or degradation of photometric calibration. The figure is a simplified schematic diagram showing the circuit of one pixel and pertinent parts of its column readout circuitry. The conventional part of the pixel circuit includes a photodiode having a small capacitance, CD. The unconventional part includes an additional larger capacitance, CL, that can be connected to the photodiode via a transfer gate controlled in part by a latch. In the high-gain mode, the signal labeled TSR in the figure is held low through the latch, which also helps to adapt the gain on a pixel-by-pixel basis. Light must be coupled to the pixel through a microlens or by back illumination in order to obtain a high effective fill factor; this is necessary to ensure high quantum efficiency, a loss of which would minimize the efficacy of the dynamic- range-enhancement scheme. Once the level of illumination of the pixel exceeds the threshold, TSR is turned on, causing the transfer gate to conduct, thereby adding CL to the pixel capacitance. The added capacitance reduces the conversion gain, and increases the pixel electron-handling capacity, thereby providing an extension of the dynamic range. By use of an array of comparators also at the bottom of the column, photocharge voltages on sampling capacitors in each column are compared with a reference voltage to determine whether it is necessary to switch from the high-gain to the low-gain mode. Depending upon the built-in offset in each pixel and in each comparator, the point at which the gain change occurs will be different, adding gain-dependent fixed pattern noise in each pixel. The offset, and hence the fixed pattern noise, is eliminated by sampling the pixel readout charge four times by use of four capacitors (instead of two such capacitors as in conventional design) connected to the bottom of the column via electronic switches SHS1, SHR1, SHS2, and SHR2, respectively, corresponding to high and low values of the signals TSR and RST. The samples are combined in an appropriate fashion to cancel offset-induced errors, and provide spurious-free imaging with extended dynamic range.

A Broad Continuum of Aeolian Impact Ripple Sizes on Mars is Allowed by Low Dynamic Wind Pressures

NASA Astrophysics Data System (ADS)

Sullivan, R. J., Jr.; Kok, J. F.; Yizhaq, H.

2017-12-01

Aeolian impact ripples are generated by impacts of wind-blown sand grains, and are common in environments with loose sand on Earth and Mars. Previous work has shown that, within a fully developed saltation cloud, impact ripple height grows upward into the boundary layer until limited by the effects of increasing wind dynamic pressure at the crest (e.g., lengthening of splash trajectories, or direct entrainment of grains by the wind). On Earth, this process limits ripples of well-sorted 250 µm dune sands to heights of millimeters, and strong winds can impose sufficient lateral dynamic pressure to flatten and erase these ripples. Rover observations show much larger ripple-like bedforms on Mars, raising questions about their formative mechanism. Here, we hypothesize that two factors allow impact ripples to grow much higher on Mars than on Earth: (1) previous work predicts a much larger difference between impact threshold and fluid threshold wind speeds on Mars than on Earth; and (2) recent analysis has revealed how low saltation flux can be initiated and sustained well below fluid threshold on Mars, allowing impact ripples to migrate entirely under prevailing conditions of relatively low wind speeds in the thin martian atmosphere. Under these circumstances, martian ripples would need to grow much larger than on Earth before reaching their maximum height limited by wind dynamic pressure effects. Because the initial size of impact ripples is similar on Mars and Earth, this should generate a much broader continuum of impact ripple sizes on Mars. Compared with Earth, far more time should be needed on Mars for impact ripples to achieve their maximum possible size. Consequently, in cases where wind azimuths are mixed but one azimuth is more dominant than others, martian impact ripples of all sizes can exist together in the same setting, with the largest examples reflecting the most common/formative wind azimuths. In cases where wind azimuth is not dominated by a single azimuth over others, ripple height should vary with orientation and the maximum possible height might never have the chance to be achieved. Our hypothesis could explain the wide range of observed ripple sizes on Mars having wavelengths from cm to several m, and suggests that the largest martian ripples are in fact large impact ripples.

Polymer brushes: a controllable system with adjustable glass transition temperature of fragile glass formers.

PubMed

Xie, Shi-Jie; Qian, Hu-Jun; Lu, Zhong-Yuan

2014-01-28

We present results of molecular dynamics simulations for coarse-grained polymer brushes in a wide temperature range to investigate the factors that affect the glass transition in these systems. We focus on the influences of free surface, polymer-substrate interaction strength, grafting density, and chain length not only on the change of glass transition temperature Tg, but also the fragility D of the glass former. It is found that the confinement can enhance the dependence of the Tg on the cooling rate as compared to the bulk melt. Our layer-resolved analysis demonstrates that it is possible to control the glass transition temperature Tg of polymer brushes by tuning the polymer-substrate interaction strength, the grafting density, and the chain length. Moreover, we find quantitative differences in the influence range of the substrate and the free surface on the density and dynamics. This stresses the importance of long range cooperative motion in glass formers near the glass transition temperature. Furthermore, the string-like cooperative motion analysis demonstrates that there exists a close relation among glass transition temperature Tg, fragility D, and string length ⟨S⟩. The polymer brushes that possess larger string length ⟨S⟩ tend to have relatively higher Tg and smaller D. Our results suggest that confining a fragile glass former through forming polymer brushes changes not only the glass transition temperature Tg, but also the very nature of relaxation process.

Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS.

PubMed

Grindon, Christina; Harris, Sarah; Evans, Tom; Novik, Keir; Coveney, Peter; Laughton, Charles

2004-07-15

Molecular modelling played a central role in the discovery of the structure of DNA by Watson and Crick. Today, such modelling is done on computers: the more powerful these computers are, the more detailed and extensive can be the study of the dynamics of such biological macromolecules. To fully harness the power of modern massively parallel computers, however, we need to develop and deploy algorithms which can exploit the structure of such hardware. The Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a scalable molecular dynamics code including long-range Coulomb interactions, which has been specifically designed to function efficiently on parallel platforms. Here we describe the implementation of the AMBER98 force field in LAMMPS and its validation for molecular dynamics investigations of DNA structure and flexibility against the benchmark of results obtained with the long-established code AMBER6 (Assisted Model Building with Energy Refinement, version 6). Extended molecular dynamics simulations on the hydrated DNA dodecamer d(CTTTTGCAAAAG)(2), which has previously been the subject of extensive dynamical analysis using AMBER6, show that it is possible to obtain excellent agreement in terms of static, dynamic and thermodynamic parameters between AMBER6 and LAMMPS. In comparison with AMBER6, LAMMPS shows greatly improved scalability in massively parallel environments, opening up the possibility of efficient simulations of order-of-magnitude larger systems and/or for order-of-magnitude greater simulation times.

Modelling coupled turbulence - dissolved oxygen dynamics near the sediment-water interface under wind waves and sea swell.

PubMed

Chatelain, Mathieu; Guizien, Katell

2010-03-01

A one-dimensional vertical unsteady numerical model for diffusion-consumption of dissolved oxygen (DO) above and below the sediment-water interface was developed to investigate DO profile dynamics under wind waves and sea swell (high-frequency oscillatory flows with periods ranging from 2 to 30s). We tested a new approach to modelling DO profiles that coupled an oscillatory turbulent bottom boundary layer model with a Michaelis-Menten based consumption model. The flow regime controls both the mean value and the fluctuations of the oxygen mass transfer efficiency during a wave cycle, as expressed by the non-dimensional Sherwood number defined with the maximum shear velocity (Sh). The Sherwood number was found to be non-dependent on the sediment biogeochemical activity (mu). In the laminar regime, both cycle-averaged and variance of the Sherwood number are very low (Sh <0.05, VAR(Sh)<0.1%). In the turbulent regime, the cycle-averaged Sherwood number is larger (Sh approximately 0.2). The Sherwood number also has intra-wave cycle fluctuations that increase with the wave Reynolds number (VAR(Sh) up to 30%). Our computations show that DO mass transfer efficiency under high-frequency oscillatory flows in the turbulent regime are water-side controlled by: (a) the diffusion time across the diffusive boundary layer and (b) diffusive boundary layer dynamics during a wave cycle. As a result of these two processes, when the wave period decreases, the Sh minimum increases and the Sh maximum decreases. Sh values vary little, ranging from 0.17 to 0.23. For periods up to 30s, oxygen penetration depth into the sediment did not show any intra-wave fluctuations. Values for the laminar regime are small (

DebriSat Pre Preshot Laboratory Analyses

DTIC Science & Technology

2015-03-27

plate on up range side. MLI Down range Up range SBU Marking Witness Plates: Post Test (protected) 17 Surfaces of samples under Whipple plates are...s SBU Marking Witness Plates Post Test : Whipple Plates 59 Bottom Middle Top Up range is to the right – note sharp band of deposits on up range side...Marking Hold down plates: Post test 63 Up range Note larger deposit fragments on the down range plate. Similar larger deposits were observed on

Dynamic interaction of monowheel inclined vehicle-vibration platform coupled system with quadratic and cubic nonlinearities

NASA Astrophysics Data System (ADS)

Zhou, Shihua; Song, Guiqiu; Sun, Maojun; Ren, Zhaohui; Wen, Bangchun

2018-01-01

In order to analyze the nonlinear dynamics and stability of a novel design for the monowheel inclined vehicle-vibration platform coupled system (MIV-VPCS) with intermediate nonlinearity support subjected to a harmonic excitation, a multi-degree of freedom lumped parameter dynamic model taking into account the dynamic interaction of the MIV-VPCS with quadratic and cubic nonlinearities is presented. The dynamical equations of the coupled system are derived by applying the displacement relationship, interaction force relationship at the contact position and Lagrange's equation, which are further discretized into a set of nonlinear ordinary differential equations with coupled terms by Galerkin's truncation. Based on the mathematical model, the coupled multi-body nonlinear dynamics of the vibration system is investigated by numerical method, and the parameters influences of excitation amplitude, mass ratio and inclined angle on the dynamic characteristics are precisely analyzed and discussed by bifurcation diagram, Largest Lyapunov exponent and 3-D frequency spectrum. Depending on different ranges of system parameters, the results show that the different motions and jump discontinuity appear, and the coupled system enters into chaotic behavior through different routes (period-doubling bifurcation, inverse period-doubling bifurcation, saddle-node bifurcation and Hopf bifurcation), which are strongly attributed to the dynamic interaction of the MIV-VPCS. The decreasing excitation amplitude and inclined angle could reduce the higher order bifurcations, and effectively control the complicated nonlinear dynamic behaviors under the perturbation of low rotational speed. The first bifurcation and chaotic motion occur at lower value of inclined angle, and the chaotic behavior lasts for larger intervals with higher rotational speed. The investigation results could provide a better understanding of the nonlinear dynamic behaviors for the dynamic interaction of the MIV-VPCS.

Coupling dynamical and collisional evolution of small bodies:. an application to the early ejection of planetesimals from the Jupiter-Saturn region

NASA Astrophysics Data System (ADS)

Charnoz, Sébastien; Morbidelli, Alessandro

2003-11-01

We present a new algorithm designed to compute the collisional erosion of a population of small bodies undergoing a complex and rapid dynamical evolution induced by strong gravitational perturbations. Usual particle-in-a-box models have been extensively and successfully used to study the evolution of asteroids or KBOs. However, they cannot track the evolution of small bodies in rapid dynamical evolution, due to their oversimplified description of the dynamics. Our code is based on both (1) a direct simulation of the dynamical evolution which is used to compute local encounter rates and (2) a classical fragmentation model. Such a code may be used to track the erosional evolution of the planetesimal disk under the action of newly formed giant-planets, a passing star or a population of massive planetary-embryos. We present here an application to a problem related to the formation of the Oort cloud. The usually accepted formation scenario is that planetesimals, originally formed in the giant planet region, have been transported to the Oort cloud by gravitational scattering. However, it has been suggested that, during the initial transport phase, the mutual large encounter velocities might have induced a rapid and intense collisional evolution of the planetesimal population, potentially causing a significant reduction of the Oort cloud formation process. This mechanism is explored with our new algorithm. Because the advantages of our new approach are better highlighted for a population undergoing a violent dynamical evolution, we concentrate in this paper on the planetesimals originally in the Jupiter-Saturn region, although it is known that they are only minor contributors to the final Oort cloud population. A wide range of parameters is explored (mass of the particle disk, initial size-distribution, material strength): depending upon the assumed parameter values, we find that from 15 to 90% of the mass contained in bodies larger than 1 km survives the collisional process; for our preferred choice of the parameters this fraction is ˜70%. It is also found that the majority of planetesimals larger than 1-10 km are pristine, and not fragments. We show also that collisional damping may not prevent planetesimals from being ejected to the outer Solar System. Thus, although the collisional activity is high during the scattering by Jupiter and Saturn, collisional grinding does not lower by orders of magnitude the mass contained in bodies larger than 1 km, originally in the Jupiter-Saturn region. These conclusions seem to support the classical collisionless scenario of Oort cloud formation, at least for the Jupiter-Saturn region.

Summer and winter space use and home range characteristics of Golden Eagles (Aquila chrysaetos) in eastern North America

USGS Publications Warehouse

Miller, Tricia A.; Brooks, Robert P.; Lanzone, Michael J.; Cooper, Jeff; O'Malley, Kieran; Brandes, David; Duerr, Adam E.; Katzner, Todd

2017-01-01

Movement behavior and its relationship to habitat provide critical information toward understanding the effects of changing environments on birds. The eastern North American population of Golden Eagles (Aquila chrysaetos) is a genetically distinct and small population of conservation concern. To evaluate the potential responses of this population to changing landscapes, we calculated the home range and core area sizes of 52 eagles of 6 age–sex classes during the summer and winter seasons. Variability in range size was related to variation in topography and open cover, and to age and sex. In summer, eagle ranges that were smaller had higher proportions of ridge tops and open cover and had greater topographic roughness than did larger ranges. In winter, smaller ranges had higher proportions of ridge tops, hillsides and cliffs, and open cover than did larger ranges. All age and sex classes responded similarly to topography and open cover in both seasons. Not surprisingly, adult eagles occupied the smallest ranges in both seasons. Young birds used larger ranges than adults, and subadults in summer used the largest ranges (>9,000 km2). Eastern adult home ranges in summer were 2–10 times larger than those reported for other populations in any season. Golden Eagles in eastern North America may need to compensate for generally lower-quality habitat in the region by using larger ranges that support access to adequate quantities of resources (prey, updrafts, and nesting, perching, and roosting sites) associated with open cover and diverse topography. Our results suggest that climate change–induced afforestation on the breeding grounds and ongoing land cover change from timber harvest and energy development on the wintering grounds may affect the amount of suitable habitat for Golden Eagles in eastern North America.

On the theory of Lorentz gases with long range interactions

NASA Astrophysics Data System (ADS)

Nota, Alessia; Simonella, Sergio; Velázquez, Juan J. L.

We construct and study the stochastic force field generated by a Poisson distribution of sources at finite density, x1,x2,…, in ℝ3 each of them yielding a long range potential QiΦ(x - xi) with possibly different charges Qi ∈ ℝ. The potential Φ is assumed to behave typically as |x|-s for large |x|, with s > 1/2. We will denote the resulting random field as “generalized Holtsmark field”. We then consider the dynamics of one tagged particle in such random force fields, in several scaling limits where the mean free path is much larger than the average distance between the scatterers. We estimate the diffusive time scale and identify conditions for the vanishing of correlations. These results are used to obtain appropriate kinetic descriptions in terms of a linear Boltzmann or Landau evolution equation depending on the specific choices of the interaction potential.

Parametric study on laminar flow for finite wings at supersonic speeds

NASA Technical Reports Server (NTRS)

Garcia, Joseph Avila

1994-01-01

Laminar flow control has been identified as a key element in the development of the next generation of High Speed Transports. Extending the amount of laminar flow over an aircraft will increase range, payload, and altitude capabilities as well as lower fuel requirements, skin temperature, and therefore the overall cost. A parametric study to predict the extent of laminar flow for finite wings at supersonic speeds was conducted using a computational fluid dynamics (CFD) code coupled with a boundary layer stability code. The parameters investigated in this study were Reynolds number, angle of attack, and sweep. The results showed that an increase in angle of attack for specific Reynolds numbers can actually delay transition. Therefore, higher lift capability, caused by the increased angle of attack, as well as a reduction in viscous drag, due to the delay in transition, can be expected simultaneously. This results in larger payload and range.

Aggregation-fragmentation-diffusion model for trail dynamics

DOE PAGES

Kawagoe, Kyle; Huber, Greg; Pradas, Marc; ...

2017-07-21

We investigate statistical properties of trails formed by a random process incorporating aggregation, fragmentation, and diffusion. In this stochastic process, which takes place in one spatial dimension, two neighboring trails may combine to form a larger one, and also one trail may split into two. In addition, trails move diffusively. The model is defined by two parameters which quantify the fragmentation rate and the fragment size. In the long-time limit, the system reaches a steady state, and our focus is the limiting distribution of trail weights. We find that the density of trail weight has power-law tail P(w)~w –γ formore » small weight w. We obtain the exponent γ analytically and find that it varies continuously with the two model parameters. In conclusion, the exponent γ can be positive or negative, so that in one range of parameters small-weight trails are abundant and in the complementary range they are rare.« less

The physical properties of double degenerate common proper motion binaries

NASA Technical Reports Server (NTRS)

Sion, Edward M.; Oswalt, Terry D.; Liebert, James; Hintzen, Paul

1991-01-01

Spectral types and spectrophotometry are presented for 21 double degenerate (DD) common proper motion binaries, along with estimates of their colors, absolute visual and bolometric magnitudes, and cooling ages. The oldest pairs in the sample are 9 x 10 to the 9th yr; the differential cooling ages range from 0.01 to 0.84. The median and mean separations of the DD pairs are 426 and 407 Au, respectively, both apparently smaller than the WD+MS values. The average UVW motions and velocity dispersions are significantly larger than the average velocities and dispersions associated with selected samples of single white dwarfs and MS+WD binaries when the latter are restricted to the same color/Mv range as the DD systems. This may be a result of the dynamical inflation of the velocity dispersion of DD systems due to their extremely ancient total stellar ages.

Radiation-MHD simulations for the development of a spark discharge channel.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Niederhaus, John Henry; Jorgenson, Roy E.; Warne, Larry K.

The growth of a cylindrical s park discharge channel in water and Lexan is studied using a series of one - dimensional simulations with the finite - element radiation - magnetohydrodynamics code ALEGRA. Computed solutions are analyzed in order to characterize the rate of growth and dynamics of the spark c hannels during the rising - current phase of the drive pulse. The current ramp rate is varied between 0.2 and 3.0 kA/ns, and values of the mechanical coupling coefficient K p are extracted for each case. The simulations predict spark channel expansion veloc ities primarily in the range ofmore » 2000 to 3500 m/s, channel pressures primarily in the range 10 - 40 GPa, and K p values primarily between 1.1 and 1.4. When Lexan is preheated, slightly larger expansion velocities and smaller K p values are predicted , but the o verall behavior is unchanged.« less

WHATCH’EM: A Weather-Driven Energy Balance Model for Determining Water Height and Temperature in Container Habitats for Aedes aegypti

PubMed Central

Steinhoff, Daniel F.; Monaghan, Andrew J.; Eisen, Lars; Barlage, Michael J.; Hopson, Thomas M.; Tarakidzwa, Isaac; Ortiz-Rosario, Karielys; Lozano-Fuentes, Saul; Hayden, Mary H.; Bieringer, Paul E.; Welsh Rodríguez, Carlos M.

2017-01-01

The mosquito virus vector Aedes (Ae.) aegypti exploits a wide range of containers as sites for egg laying and development of the immature life stages, yet the approaches for modeling meteorologically sensitive container water dynamics have been limited. This study introduces the Water Height and Temperature in Container Habitats Energy Model (WHATCH’EM), a state-of-the-science, physically based energy balance model of water height and temperature in containers that may serve as development sites for mosquitoes. The authors employ WHATCH’EM to model container water dynamics in three cities along a climatic gradient in México ranging from sea level, where Ae. aegypti is highly abundant, to ~2100 m, where Ae. aegypti is rarely found. When compared with measurements from a 1-month field experiment in two of these cities during summer 2013, WHATCH’EM realistically simulates the daily mean and range of water temperature for a variety of containers. To examine container dynamics for an entire season, WHATCH’EM is also driven with field-derived meteorological data from May to September 2011 and evaluated for three commonly encountered container types. WHATCH’EM simulates the highly nonlinear manner in which air temperature, humidity, rainfall, clouds, and container characteristics (shape, size, and color) determine water temperature and height. Sunlight exposure, modulated by clouds and shading from nearby objects, plays a first-order role. In general, simulated water temperatures are higher for containers that are larger, darker, and receive more sunlight. WHATCH’EM simulations will be helpful in understanding the limiting meteorological and container-related factors for proliferation of Ae. aegypti and may be useful for informing weather-driven early warning systems for viruses transmitted by Ae. aegypti. PMID:29123363

Detailed numerical investigation of the dissipative stochastic mechanics based neuron model.

PubMed

Güler, Marifi

2008-10-01

Recently, a physical approach for the description of neuronal dynamics under the influence of ion channel noise was proposed in the realm of dissipative stochastic mechanics (Güler, Phys Rev E 76:041918, 2007). Led by the presence of a multiple number of gates in an ion channel, the approach establishes a viewpoint that ion channels are exposed to two kinds of noise: the intrinsic noise, associated with the stochasticity in the movement of gating particles between the inner and the outer faces of the membrane, and the topological noise, associated with the uncertainty in accessing the permissible topological states of open gates. Renormalizations of the membrane capacitance and of a membrane voltage dependent potential function were found to arise from the mutual interaction of the two noisy systems. The formalism therein was scrutinized using a special membrane with some tailored properties giving the Rose-Hindmarsh dynamics in the deterministic limit. In this paper, the resultant computational neuron model of the above approach is investigated in detail numerically for its dynamics using time-independent input currents. The following are the major findings obtained. The intrinsic noise gives rise to two significant coexisting effects: it initiates spiking activity even in some range of input currents for which the corresponding deterministic model is quiet and causes bursting in some other range of input currents for which the deterministic model fires tonically. The renormalization corrections are found to augment the above behavioral transitions from quiescence to spiking and from tonic firing to bursting, and, therefore, the bursting activity is found to take place in a wider range of input currents for larger values of the correction coefficients. Some findings concerning the diffusive behavior in the voltage space are also reported.

Local Helioseismology of Emerging Active Regions: A Case Study

NASA Astrophysics Data System (ADS)

Kosovichev, Alexander G.; Zhao, Junwei; Ilonidis, Stathis

2018-04-01

Local helioseismology provides a unique opportunity to investigate the subsurface structure and dynamics of active regions and their effect on the large-scale flows and global circulation of the Sun. We use measurements of plasma flows in the upper convection zone, provided by the Time-Distance Helioseismology Pipeline developed for analysis of solar oscillation data obtained by Helioseismic and Magnetic Imager (HMI) on Solar Dynamics Observatory (SDO), to investigate the subsurface dynamics of emerging active region NOAA 11726. The active region emergence was detected in deep layers of the convection zone about 12 hours before the first bipolar magnetic structure appeared on the surface, and 2 days before the emergence of most of the magnetic flux. The speed of emergence determined by tracking the flow divergence with depth is about 1.4 km/s, very close to the emergence speed in the deep layers. As the emerging magnetic flux becomes concentrated in sunspots local converging flows are observed beneath the forming sunspots. These flows are most prominent in the depth range 1-3 Mm, and remain converging after the formation process is completed. On the larger scale converging flows around active region appear as a diversion of the zonal shearing flows towards the active region, accompanied by formation of a large-scale vortex structure. This process occurs when a substantial amount of the magnetic flux emerged on the surface, and the converging flow pattern remains stable during the following evolution of the active region. The Carrington synoptic flow maps show that the large-scale subsurface inflows are typical for active regions. In the deeper layers (10-13 Mm) the flows become diverging, and surprisingly strong beneath some active regions. In addition, the synoptic maps reveal a complex evolving pattern of large-scale flows on the scale much larger than supergranulation

Intraspecific scaling of the minimum metabolic cost of transport in leghorn chickens (Gallus gallus domesticus): links with limb kinematics, morphometrics and posture.

PubMed

Rose, Kayleigh A; Nudds, Robert L; Codd, Jonathan R

2015-04-01

The minimum metabolic cost of transport (CoTmin; J kg(-1) m(-1)) scales negatively with increasing body mass (∝Mb (-1/3)) across species from a wide range of taxa associated with marked differences in body plan. At the intraspecific level, or between closely related species, however, CoTmin does not always scale with Mb. Similarity in physiology, dynamics of movement, skeletal geometry and posture between closely related individuals is thought to be responsible for this phenomenon, despite the fact that energetic, kinematic and morphometric data are rarely collected together. We examined the relationship between these integrated components of locomotion in leghorn chickens (Gallus gallus domesticus) selectively bred for large and bantam (miniature) varieties. Interspecific allometry predicts a CoTmin ∼16% greater in bantams compared with the larger variety. However, despite 38% and 23% differences in Mb and leg length, respectively, the two varieties shared an identical walking CoTmin, independent of speed and equal to the allometric prediction derived from interspecific data for the larger variety. Furthermore, the two varieties moved with dynamic similarity and shared geometrically similar appendicular and axial skeletons. Hip height, however, did not scale geometrically and the smaller variety had more erect limbs, contrary to interspecific scaling trends. The lower than predicted CoTmin in bantams for their Mb was associated with both the more erect posture and a lower cost per stride (J kg(-1) stride(-1)). Therefore, our findings are consistent with the notion that a more erect limb is associated with a lower CoTmin and with the previous assumption that similarity in skeletal shape, inherently linked to walking dynamics, is associated with similarity in CoTmin. © 2015. Published by The Company of Biologists Ltd.

Intraspecific scaling of the minimum metabolic cost of transport in leghorn chickens (Gallus gallus domesticus): links with limb kinematics, morphometrics and posture

PubMed Central

Rose, Kayleigh A.; Nudds, Robert L.; Codd, Jonathan R.

2015-01-01

ABSTRACT The minimum metabolic cost of transport (CoTmin; J kg−1 m−1) scales negatively with increasing body mass (∝Mb−1/3) across species from a wide range of taxa associated with marked differences in body plan. At the intraspecific level, or between closely related species, however, CoTmin does not always scale with Mb. Similarity in physiology, dynamics of movement, skeletal geometry and posture between closely related individuals is thought to be responsible for this phenomenon, despite the fact that energetic, kinematic and morphometric data are rarely collected together. We examined the relationship between these integrated components of locomotion in leghorn chickens (Gallus gallus domesticus) selectively bred for large and bantam (miniature) varieties. Interspecific allometry predicts a CoTmin ∼16% greater in bantams compared with the larger variety. However, despite 38% and 23% differences in Mb and leg length, respectively, the two varieties shared an identical walking CoTmin, independent of speed and equal to the allometric prediction derived from interspecific data for the larger variety. Furthermore, the two varieties moved with dynamic similarity and shared geometrically similar appendicular and axial skeletons. Hip height, however, did not scale geometrically and the smaller variety had more erect limbs, contrary to interspecific scaling trends. The lower than predicted CoTmin in bantams for their Mb was associated with both the more erect posture and a lower cost per stride (J kg−1 stride−1). Therefore, our findings are consistent with the notion that a more erect limb is associated with a lower CoTmin and with the previous assumption that similarity in skeletal shape, inherently linked to walking dynamics, is associated with similarity in CoTmin. PMID:25657211

Intrinsic group behaviour: Dependence of pedestrian dyad dynamics on principal social and personal features

PubMed Central

Yücel, Zeynep; Brščić, Dražen; Kanda, Takayuki; Hagita, Norihiro

2017-01-01

Being determined by human social behaviour, pedestrian group dynamics may depend on “intrinsic properties” such as the purpose of the pedestrians, their personal relation, gender, age, and body size. In this work we investigate the dynamical properties of pedestrian dyads (distance, spatial formation and velocity) by analysing a large data set of automatically tracked pedestrian trajectories in an unconstrained “ecological” setting (a shopping mall), whose apparent physical and social group properties have been analysed by three different human coders. We observed that females walk slower and closer than males, that workers walk faster, at a larger distance and more abreast than leisure oriented people, and that inter-group relation has a strong effect on group structure, with couples walking very close and abreast, colleagues walking at a larger distance, and friends walking more abreast than family members. Pedestrian height (obtained automatically through our tracking system) influences velocity and abreast distance, both growing functions of the average group height. Results regarding pedestrian age show that elderly people walk slowly, while active age adults walk at the maximum velocity. Groups with children have a strong tendency to walk in a non-abreast formation, with a large distance (despite a low abreast distance). A cross-analysis of the interplay between these intrinsic features, taking in account also the effect of an “extrinsic property” such as crowd density, confirms these major results but reveals also a richer structure. An interesting and unexpected result, for example, is that the velocity of groups with children increases with density, at least in the low-medium density range found under normal conditions in shopping malls. Children also appear to behave differently according to the gender of the parent. PMID:29095913

Intrinsic group behaviour: Dependence of pedestrian dyad dynamics on principal social and personal features.

PubMed

Zanlungo, Francesco; Yücel, Zeynep; Brščić, Dražen; Kanda, Takayuki; Hagita, Norihiro

2017-01-01

Being determined by human social behaviour, pedestrian group dynamics may depend on "intrinsic properties" such as the purpose of the pedestrians, their personal relation, gender, age, and body size. In this work we investigate the dynamical properties of pedestrian dyads (distance, spatial formation and velocity) by analysing a large data set of automatically tracked pedestrian trajectories in an unconstrained "ecological" setting (a shopping mall), whose apparent physical and social group properties have been analysed by three different human coders. We observed that females walk slower and closer than males, that workers walk faster, at a larger distance and more abreast than leisure oriented people, and that inter-group relation has a strong effect on group structure, with couples walking very close and abreast, colleagues walking at a larger distance, and friends walking more abreast than family members. Pedestrian height (obtained automatically through our tracking system) influences velocity and abreast distance, both growing functions of the average group height. Results regarding pedestrian age show that elderly people walk slowly, while active age adults walk at the maximum velocity. Groups with children have a strong tendency to walk in a non-abreast formation, with a large distance (despite a low abreast distance). A cross-analysis of the interplay between these intrinsic features, taking in account also the effect of an "extrinsic property" such as crowd density, confirms these major results but reveals also a richer structure. An interesting and unexpected result, for example, is that the velocity of groups with children increases with density, at least in the low-medium density range found under normal conditions in shopping malls. Children also appear to behave differently according to the gender of the parent.

Spatial Patterns of Greenhouse Gases Across an Urbanization Gradient in a Suburban River Network

NASA Astrophysics Data System (ADS)

Robison, A.; Balch, E.; Wollheim, W. M.

2017-12-01

River networks are important components of the global carbon cycle, processing significant quantities of terrestrial carbon and are most often sources of greenhouse gases (GHGs) to the atmosphere. While recent investigations have begun to incorporate aquatic systems into continental carbon budgets, our understanding of what drives the variability in space and time of these dynamics is poorly constrained. Meanwhile, urban areas continue to expand rapidly across the globe, with wide ranging effects on aquatic systems. A better understanding of the effect of human activities on aquatic carbon and GHG dynamics at both local and global scales is needed. We address the question: How does urbanization affect GHG dynamics in river networks? To address this question, we conducted a synoptic survey of 45 sites in a suburban river network in New England (Ipswich River, MA), analyzing samples for physical and chemical characteristics, including dissolved GHGs, carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). Sampling sites were selected across an urbanization gradient (1.4-90% developed) and included headwater streams, major tributaries, the basin mouth, and additional sites along the main stem. Initial results indicate dissolved N2O concentration in headwater streams is related to catchment development, while CO2 and CH4 are not correlated to land use generally. CO2 and CH4 signals from urban areas are likely modified by fluvial wetlands that are abundant along larger tributaries and the mainstem. Developed watersheds are inherently altered and heterogeneous landscapes. To fully quantify the role of urbanized waters in the larger carbon cycle, GHG dynamics must be considered at the river network scale. The work presented here begins this process, allowing for an examination of the interaction between land use and GHG concentrations. Additional analyses will focus on further constraining GHG patterns across the river network, and modeling gas transport through and flux out of the system. This relationship should also be examined across time and under varying flow conditions.

Turbulence sources, character, and effects in the stable boundary layer: Insights from multi-scale direct numerical simulations and new, high-resolution measurements

NASA Astrophysics Data System (ADS)

Fritts, Dave; Wang, Ling; Balsley, Ben; Lawrence, Dale

2013-04-01

A number of sources contribute to intermittent small-scale turbulence in the stable boundary layer (SBL). These include Kelvin-Helmholtz instability (KHI), gravity wave (GW) breaking, and fluid intrusions, among others. Indeed, such sources arise naturally in response to even very simple "multi-scale" superpositions of larger-scale GWs and smaller-scale GWs, mean flows, or fine structure (FS) throughout the atmosphere and the oceans. We describe here results of two direct numerical simulations (DNS) of these GW-FS interactions performed at high resolution and high Reynolds number that allow exploration of these turbulence sources and the character and effects of the turbulence that arises in these flows. Results include episodic turbulence generation, a broad range of turbulence scales and intensities, PDFs of dissipation fields exhibiting quasi-log-normal and more complex behavior, local turbulent mixing, and "sheet and layer" structures in potential temperature that closely resemble high-resolution measurements. Importantly, such multi-scale dynamics differ from their larger-scale, quasi-monochromatic gravity wave or quasi-horizontally homogeneous shear flow instabilities in significant ways. The ability to quantify such multi-scale dynamics with new, very high-resolution measurements is also advancing rapidly. New in-situ sensors on small, unmanned aerial vehicles (UAVs), balloons, or tethered systems are enabling definition of SBL (and deeper) environments and turbulence structure and dissipation fields with high spatial and temporal resolution and precision. These new measurement and modeling capabilities promise significant advances in understanding small-scale instability and turbulence dynamics, in quantifying their roles in mixing, transport, and evolution of the SBL environment, and in contributing to improved parameterizations of these dynamics in mesoscale, numerical weather prediction, climate, and general circulation models. We expect such measurement and modeling capabilities to also aid in the design of new and more comprehensive future SBL measurement programs.

The dynamic contributions of the otolith organs to human ocular torsion

NASA Technical Reports Server (NTRS)

Merfeld, D. M.; Teiwes, W.; Clarke, A. H.; Scherer, H.; Young, L. R.

1996-01-01

We measured human ocular torsion (OT) monocularly (using video) and binocularly (using search coils) while sinusoidally accelerating (0.7 g) five human subjects along an earth-horizontal axis at five frequencies (0.35, 0.4, 0.5, 0.75, and 1.0 Hz). The compensatory nature of OT was investigated by changing the relative orientation of the dynamic (linear acceleration) and static (gravitational) cues. Four subject orientations were investigated: (1) Y-upright-acceleration along the interaural (y) axis while upright; (2) Y-supine-acceleration along the y-axis while supine; (3) Z-RED-acceleration along the dorsoventral (z) axis with right ear down; (4) Z-supine-acceleration along the z-axis while supine. Linear acceleration in the Y-upright, Y-supine and Z-RED orientations elicited conjugate OT. The smaller response in the Z-supine orientation appeared disconjugate. The amplitude of the response decreased and the phase lag increased with increasing frequency for each orientation. This frequency dependence does not match the frequency response of the regular or irregular afferent otolith neurons; therefore the response dynamics cannot be explained by simple peripheral mechanisms. The Y-upright responses were larger than the Y-supine responses (P < 0.05). This difference indicates that OT must be more complicated than a simple low-pass filtered response to interaural shear force, since the dynamic shear force along the interaural axis was identical in these two orientations. The Y-supine responses were, in turn, larger than the Z-RED responses (P < 0.01). Interestingly, the vector sum of the Y-supine responses plus Z-RED responses was not significantly different (P = 0.99) from the Y-upright responses. This suggests that, in this frequency range, the conjugate OT response during Y-upright stimulation might be composed of two components: (1) a response to shear force along the y-axis (as in Y-supine stimulation), and (2) a response to roll tilt of gravitoinertial force (as in Z-RED stimulation).

A unified model for age-velocity dispersion relations in Local Group galaxies: disentangling ISM turbulence and latent dynamical heating

NASA Astrophysics Data System (ADS)

Leaman, Ryan; Mendel, J. Trevor; Wisnioski, Emily; Brooks, Alyson M.; Beasley, Michael A.; Starkenburg, Else; Martig, Marie; Battaglia, Giuseppina; Christensen, Charlotte; Cole, Andrew A.; de Boer, T. J. L.; Wills, Drew

2017-12-01

We analyse age-velocity dispersion relations (AVRs) from kinematics of individual stars in eight Local Group galaxies ranging in mass from Carina (M* ∼ 106 M⊙) to M31 (M* ∼ 1011 M⊙). Observationally the σ versus stellar age trends can be interpreted as dynamical heating of the stars by giant molecular clouds, bars/spiral arms or merging subhaloes; alternatively the stars could have simply been born out of a more turbulent interstellar medium (ISM) at high redshift and retain that larger velocity dispersion till present day - consistent with recent integral field unit kinematic studies. To ascertain the dominant mechanism and better understand the impact of instabilities and feedback, we develop models based on observed star formation histories (SFHs) of these Local Group galaxies in order to create an evolutionary formalism that describes the ISM velocity dispersion due to a galaxy's evolving gas fraction. These empirical models relax the common assumption that the stars are born from gas that has constant velocity dispersion at all redshifts. Using only the observed SFHs as input, the ISM velocity dispersion and a mid-plane scattering model fits the observed AVRs of low-mass galaxies without fine tuning. Higher mass galaxies above Mvir ≳ 1011 M⊙ need a larger contribution from latent dynamical heating processes (for example minor mergers), in excess of the ISM model. Using the SFHs, we also find that supernovae feedback does not appear to be a dominant driver of the gas velocity dispersion compared to gravitational instabilities - at least for dispersions σ ≳ 25 km s-1. Together our results point to stars being born with a velocity dispersion close to that of the gas at the time of their formation, with latent dynamical heating operating with a galaxy mass-dependent efficiency. These semi-empirical relations may help constrain the efficiency of feedback and its impact on the physics of disc settling in galaxy formation simulations.

Nowcasting of rainfall and of combined sewage flow in urban drainage systems.

PubMed

Achleitner, Stefan; Fach, Stefan; Einfalt, Thomas; Rauch, Wolfgang

2009-01-01

Nowcasting of rainfall may be used additionally to online rain measurements to optimize the operation of urban drainage systems. Uncertainties quoted for the rain volume are in the range of 5% to 10% mean square error (MSE), where for rain intensities 45% to 75% MSE are noted. For larger forecast periods up to 3 hours, the uncertainties will increase up to some hundred percents. Combined with the growing number of real time control concepts in sewer systems, rainfall forecast is used more and more in urban drainage systems. Therefore it is of interest how the uncertainties influence the final evaluation of a defined objective function. Uncertainty levels associated with the forecast itself are not necessarily transferable to resulting uncertainties in the catchment's flow dynamics. The aim of this paper is to analyse forecasts of rainfall and specific sewer output variables. For this study the combined sewer system of the city of Linz in the northern part of Austria located on the Danube has been selected. The city itself represents a total area of 96 km2 with 39 municipalities connected. It was found that the available weather radar data leads to large deviations in the forecast for precipitation at forecast horizons larger than 90 minutes. The same is true for sewer variables such a CSO overflow for small sub-catchments. Although the results improve for larger spatial scales, acceptable levels at forecast horizons larger than 90 minutes are not reached.

Structures and dynamics in a two-dimensional dipolar dust particle system

NASA Astrophysics Data System (ADS)

Hou, X. N.; Liu, Y. H.; Kravchenko, O. V.; Lapushkina, T. A.; Azarova, O. A.; Chen, Z. Y.; Huang, F.

2018-05-01

The effects of electric dipole moment, the number of dipolar particles, and system temperature on the structures and dynamics of a dipolar dust particle system are studied by molecular dynamics simulations. The results show that the larger electric dipole moment is favorable for the formation of a long-chain structure, the larger number of dipolar dust particles promotes the formation of the multi-chain structure, and the higher system temperature can cause higher rotation frequency. The trajectories, mean square displacement (MSD), and the corresponding spectrum functions of the MSDs are also calculated to illustrate the dynamics of the dipolar dust particle system, which is also closely related to the growth of dust particles. Some simulations are qualitatively in agreement with our experiments and can provide a guide for the study on dust growth, especially on the large-sized particles.

Transfer of movement sequences: bigger is better.

PubMed

Dean, Noah J; Kovacs, Attila J; Shea, Charles H

2008-02-01

Experiment 1 was conducted to determine if proportional transfer from "small to large" scale movements is as effective as transferring from "large to small." We hypothesize that the learning of larger scale movement will require the participant to learn to manage the generation, storage, and dissipation of forces better than when practicing smaller scale movements. Thus, we predict an advantage for transfer of larger scale movements to smaller scale movements relative to transfer from smaller to larger scale movements. Experiment 2 was conducted to determine if adding a load to a smaller scale movement would enhance later transfer to a larger scale movement sequence. It was hypothesized that the added load would require the participants to consider the dynamics of the movement to a greater extent than without the load. The results replicated earlier findings of effective transfer from large to small movements, but consistent with our hypothesis, transfer was less effective from small to large (Experiment 1). However, when a load was added during acquisition transfer from small to large was enhanced even though the load was removed during the transfer test. These results are consistent with the notion that the transfer asymmetry noted in Experiment 1 was due to factors related to movement dynamics that were enhanced during practice of the larger scale movement sequence, but not during the practice of the smaller scale movement sequence. The findings that the movement structure is unaffected by transfer direction but the movement dynamics are influenced by transfer direction is consistent with hierarchal models of sequence production.

Transport and collision dynamics in periodic asymmetric obstacle arrays: Rational design of microfluidic rare-cell immunocapture devices

NASA Astrophysics Data System (ADS)

Gleghorn, Jason P.; Smith, James P.; Kirby, Brian J.

2013-09-01

Microfluidic obstacle arrays have been used in numerous applications, and their ability to sort particles or capture rare cells from complex samples has broad and impactful applications in biology and medicine. We have investigated the transport and collision dynamics of particles in periodic obstacle arrays to guide the design of convective, rather than diffusive, transport-based immunocapture microdevices. Ballistic and full computational fluid dynamics simulations are used to understand the collision modes that evolve in cylindrical obstacle arrays with various geometries. We identify previously unrecognized collision mode structures and differential size-based collision frequencies that emerge from these arrays. Previous descriptions of transverse displacements that assume unidirectional flow in these obstacle arrays cannot capture mode transitions properly as these descriptions fail to capture the dependence of the mode transitions on column spacing and the attendant change in the flow field. Using these analytical and computational simulations, we elucidate design parameters that induce high collision rates for all particles larger than a threshold size or selectively increase collision frequencies for a narrow range of particle sizes within a polydisperse population. Furthermore, we investigate how the particle Péclet number affects collision dynamics and mode transitions and demonstrate that experimental observations from various obstacle array geometries are well described by our computational model.

Regulation of muscle stiffness during periodic length changes in the isolated abdomen of the hermit crab.

PubMed

Chapple, W D

1997-09-01

Reflex activation of the ventral superficial muscles (VSM) in the abdomen of the hermit crab, Pagurus pollicarus, was studied using sinusoidal and stochastic longitudinal vibration of the muscle while recording the length and force of the muscle and the spike times of three exciter motoneurons. In the absence of vibration, the interspike interval histograms of the two larger motoneurons were bimodal; cutting sensory nerves containing most of the mechanoreceptor input removed the short interval peak in the histogram, indicating that the receptors are important in maintaining tonic firing. Vibration of the muscle evoked a reflex increase in motoneuron frequency that habituated after an initial peak but remained above control levels for the duration of stimulation. Motoneuron frequency increased with root mean square (rms) stimulus amplitude. Average stiffness during stimulation was about two times the stiffness of passive muscle. The reflex did not alter muscle dynamics. Estimated transfer functions were calculated from the fast Fourier transform of length and force signals. Coherence was >0.9 for the frequency range of 3-35 Hz. Stiffness magnitude gradually increased over this range in both reflex activated and passive muscle; phase was between 10 and 20 degrees. Reflex stiffness decreased with increasing stimulus amplitudes, but at larger amplitudes, this decrease was much less pronounced; in this range stiffness was regulated by the reflex. The sinusoidal frequency at which reflex bursts were elicited was approximately 6 Hz, consistent with previous measurements using ramp stretch. During reflex excitation, there was an increase in amplitude of the short interval peak in the interspike interval histogram; this was reduced when the majority of afferent pathways was removed. A phase histogram of motoneuron firing during sinusoidal vibration had a peak at approximately 110 ms, also suggesting that an important component of the reflex is via direct projections from the mechanoreceptors. These results are consistent with the hypothesis that a robust feedforward regulation of abdominal stiffness during continuous disturbances is achieved by mechanoreceptors signalling the absolute value of changing forces; habituation of the reflex, its high-threshold for low frequency disturbances and the activation kinetics of the muscle further modify reflex dynamics.

Method and apparatus for analog signal conditioner for high speed, digital x-ray spectrometer

DOEpatents

Warburton, William K.; Hubbard, Bradley

1999-01-01

A signal processing system which accepts input from an x-ray detector-preamplifier and produces a signal of reduced dynamic range for subsequent analog-to-digital conversion. The system conditions the input signal to reduce the number of bits required in the analog-to-digital converter by removing that part of the input signal which varies only slowly in time and retaining the amplitude of the pulses which carry information about the x-rays absorbed by the detector. The parameters controlling the signal conditioner's operation can be readily supplied in digital form, allowing it to be integrated into a feedback loop as part of a larger digital x-ray spectroscopy system.

Energy-tunable sources of entangled photons: a viable concept for solid-state-based quantum relays.

PubMed

Trotta, Rinaldo; Martín-Sánchez, Javier; Daruka, Istvan; Ortix, Carmine; Rastelli, Armando

2015-04-17

We propose a new method of generating triggered entangled photon pairs with wavelength on demand. The method uses a microstructured semiconductor-piezoelectric device capable of dynamically reshaping the electronic properties of self-assembled quantum dots (QDs) via anisotropic strain engineering. Theoretical models based on k·p theory in combination with finite-element calculations show that the energy of the polarization-entangled photons emitted by QDs can be tuned in a range larger than 100 meV without affecting the degree of entanglement of the quantum source. These results pave the way towards the deterministic implementation of QD entanglement resources in all-electrically-controlled solid-state-based quantum relays.

Energy-Tunable Sources of Entangled Photons: A Viable Concept for Solid-State-Based Quantum Relays

NASA Astrophysics Data System (ADS)

Trotta, Rinaldo; Martín-Sánchez, Javier; Daruka, Istvan; Ortix, Carmine; Rastelli, Armando

2015-04-01

We propose a new method of generating triggered entangled photon pairs with wavelength on demand. The method uses a microstructured semiconductor-piezoelectric device capable of dynamically reshaping the electronic properties of self-assembled quantum dots (QDs) via anisotropic strain engineering. Theoretical models based on k .p theory in combination with finite-element calculations show that the energy of the polarization-entangled photons emitted by QDs can be tuned in a range larger than 100 meV without affecting the degree of entanglement of the quantum source. These results pave the way towards the deterministic implementation of QD entanglement resources in all-electrically-controlled solid-state-based quantum relays.

Hydrodynamic interaction of trapped active Janus particles in two dimensions

NASA Astrophysics Data System (ADS)

Debnath, Tanwi; Li, Yunyun; Ghosh, Pulak K.; Marchesoni, Fabio

2018-04-01

The dynamics of a pair of identical artificial microswimmers bound inside two harmonic traps, in a thin sheared fluid film, is numerically investigated. In a two-dimensional Oseen approximation, the hydrodynamic pair coupling is long-ranged and proportional to the particle radius to film thickness ratio. On increasing such ratio above a certain threshold, a transition occurs between a free regime, where each swimmer orbits in its own trap with random phase, and a strong synchronization regime, where the two swimmers strongly repel each other to an average distance larger than both the trap distance and their free orbit diameter. Moreover, the swimmers tend to synchronize their positions opposite the center of the system.

Mimicking subsecond neurotransmitter dynamics with femtosecond laser stimulated nanosystems.

PubMed

Nakano, Takashi; Chin, Catherine; Myint, David Mo Aung; Tan, Eng Wui; Hale, Peter John; Krishna M, Bala Murali; Reynolds, John N J; Wickens, Jeff; Dani, Keshav M

2014-06-23

Existing nanoscale chemical delivery systems target diseased cells over long, sustained periods of time, typically through one-time, destructive triggering. Future directions lie in the development of fast and robust techniques capable of reproducing the pulsatile chemical activity of living organisms, thereby allowing us to mimic biofunctionality. Here, we demonstrate that by applying programmed femtosecond laser pulses to robust, nanoscale liposome structures containing dopamine, we achieve sub-second, controlled release of dopamine--a key neurotransmitter of the central nervous system--thereby replicating its release profile in the brain. The fast delivery system provides a powerful new interface with neural circuits, and to the larger range of biological functions that operate on this short timescale.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Muir, Ryan D.; Sullivan, Shane Z.; Oglesbee, Robert A.

Digital lock-in amplification (LIA) with synchronous digitization (SD) is shown to provide significant signal to noise (S/N) and linear dynamic range advantages in beam-scanning microscopy measurements using pulsed laser sources. Direct comparisons between SD-LIA and conventional LIA in homodyne second harmonic generation measurements resulted in S/N enhancements consistent with theoretical models. SD-LIA provided notably larger S/N enhancements in the limit of low light intensities, through the smooth transition between photon counting and signal averaging developed in previous work. Rapid beam scanning instrumentation with up to video rate acquisition speeds minimized photo-induced sample damage. The corresponding increased allowance for higher lasermore » power without sample damage is advantageous for increasing the observed signal content.« less

Algorithms for a very high speed universal noiseless coding module

NASA Technical Reports Server (NTRS)

Rice, Robert F.; Yeh, Pen-Shu

1991-01-01

The algorithmic definitions and performance characterizations are presented for a high performance adaptive coding module. Operation of at least one of these (single chip) implementations is expected to exceed 500 Mbits/s under laboratory conditions. Operation of a companion decoding module should operate at up to half the coder's rate. The module incorporates a powerful noiseless coder for Standard Form Data Sources (i.e., sources whose symbols can be represented by uncorrelated non-negative integers where the smaller integers are more likely than the larger ones). Performance close to data entropies can be expected over a Dynamic Range of from 1.5 to 12 to 14 bits/sample (depending on the implementation).

Auditory Brainstem and Middle Latency Responses Measured Pre- and Posttreatment for Hyperacusic Hearing-Impaired Persons Successfully Treated to Improve Sound Tolerance and to Expand the Dynamic Range for Loudness: Case Evidence.

PubMed

Formby, Craig; Korczak, Peggy; Sherlock, LaGuinn P; Hawley, Monica L; Gold, Susan

2017-02-01

In this report of three cases, we consider electrophysiologic measures from three hyperacusic hearing-impaired individuals who, prior to treatment to expand their dynamic ranges for loudness, were problematic hearing aid candidates because of their diminished sound tolerance and reduced dynamic ranges. Two of these individuals were treated with structured counseling combined with low-level broadband sound therapy from bilateral sound generators and the third case received structured counseling in combination with a short-acting placebo sound therapy. Each individual was highly responsive to his or her assigned treatment as revealed by expansion of the dynamic range by at least 20 dB at one or more frequencies posttreatment. Of specific interest in this report are their latency and amplitude measures taken from tone burst-evoked auditory brainstem response (ABR) and cortically derived middle latency response (MLR) recordings, measured as a function of increasing loudness at 500 and 2,000 Hz pre- and posttreatment. The resulting ABR and MLR latency and amplitude measures for each case are considered here in terms of pre- and posttreatment predictions. The respective pre- and posttreatment predictions anticipated larger pretreatment response amplitudes and shorter pretreatment response latencies relative to typical normal control values and smaller normative-like posttreatment response amplitudes and longer posttreatment response latencies relative to the corresponding pretreatment values for each individual. From these results and predictions, we conjecture about the neural origins of the hyperacusis conditions (i.e., brainstem versus cortical) and the neuronal sites responsive to treatment. The only consistent finding in support of the pre- and posttreatment predictions and, thus, the strongest index of hyperacusis and positive treatment-related effects was measured for MLR latency responses for wave Pa at 2,000 Hz. Other response indices, including ABR wave V latency and wave V-V' amplitude and MLR wave Na-Pa amplitude for 500 and 2,000 Hz, appear either ambiguous across and/or within these individuals. Notwithstanding significant challenges for interpreting these findings, including associated confounding effects of their sensorineural hearing losses and differences in the presentation levels of the toneburst stimuli used to collect these measures for each individual, our limited analyses of three cases suggest measures of MLR wave Pa latency at 2,000 Hz (reflecting cortical contributions) may be a promising objective indicator of hyperacusis and dynamic range expansion treatment effects.

Compressibility effects on dynamic stall of airfoils undergoing rapid transient pitching motion

NASA Technical Reports Server (NTRS)

Chandrasekhara, M. S.; Platzer, M. F.

1992-01-01

The research was carried out in the Compressible Dynamic Stall Facility, CDSF, at the Fluid Mechanics Laboratory (FML) of NASA Ames Research Center. The facility can produce realistic nondimensional pitch rates experienced by fighter aircraft, which on model scale could be as high as 3600/sec. Nonintrusive optical techniques were used for the measurements. The highlight of the effort was the development of a new real time interferometry method known as Point Diffraction Interferometry - PDI, for use in unsteady separated flows. This can yield instantaneous flow density information (and hence pressure distributions in isentropic flows) over the airfoil. A key finding is that the dynamic stall vortex forms just as the airfoil leading edge separation bubble opens-up. A major result is the observation and quantification of multiple shocks over the airfoil near the leading edge. A quantitative analysis of the PDI images shows that pitching airfoils produce larger suction peaks than steady airfoils at the same Mach number prior to stall. The peak suction level reached just before stall develops is the same at all unsteady rates and decreases with increase in Mach number. The suction is lost once the dynamic stall vortex or vortical structure begins to convect. Based on the knowledge gained from this preliminary analysis of the data, efforts to control dynamic stall were initiated. The focus of this work was to arrive at a dynamically changing leading edge shape that produces only 'acceptable' airfoil pressure distributions over a large angle of attack range.

NMR-NOE and MD simulation study on phospholipid membranes: dependence on membrane diameter and multiple time scale dynamics.

PubMed

Shintani, Megumi; Yoshida, Ken; Sakuraba, Shun; Nakahara, Masaru; Matubayasi, Nobuyuki

2011-07-28

Motional correlation times between the hydrophilic and hydrophobic terminal groups in lipid membranes are studied over a wide range of curvatures using the solution-state (1)H NMR-nuclear Overhauser effect (NOE) and molecular dynamics (MD) simulation. To enable (1)H NMR-NOE measurements for large vesicles, the transient NOE method is combined with the spin-echo method, and is successfully applied to a micelle of 1-palmitoyl-lysophosphatidylcholine (PaLPC) with diameter of 5 nm and to vesicles of dipalmitoylphosphatidylcholine (DPPC) with diameters ranging from 30 to 800 nm. It is found that the NOE intensity increases with the diameter up to ∼100 nm, and the model membrane is considered planar on the molecular level beyond ∼100 nm. While the NOE between the hydrophilic terminal and hydrophobic terminal methyl groups is absent for the micelle, its intensity is comparable to that for the neighboring group for vesicles with larger diameters. The origin of NOE signals between distant sites is analyzed by MD simulations of PaLPC micelles and DPPC planar bilayers. The slow relaxation is shown to yield an observable NOE signal even for the hydrophilic and hydrophobic terminal sites. Since the information on distance and dynamics cannot be separated in the experimental NOE alone, the correlation time in large vesicles is determined by combining the experimental NOE intensity and MD-based distance distribution. For large vesicles, the correlation time is found to vary by 2 orders of magnitude over the proton sites. This study shows that NOE provides dynamic information on large vesicles when combined with MD, which provides structural information. © 2011 American Chemical Society

Specific dynamic action: a review of the postprandial metabolic response.

PubMed

Secor, Stephen M

2009-01-01

For more than 200 years, the metabolic response that accompanies meal digestion has been characterized, theorized, and experimentally studied. Historically labeled "specific dynamic action" or "SDA", this physiological phenomenon represents the energy expended on all activities of the body incidental to the ingestion, digestion, absorption, and assimilation of a meal. Specific dynamic action or a component of postprandial metabolism has been quantified for more than 250 invertebrate and vertebrate species. Characteristic among all of these species is a rapid postprandial increase in metabolic rate that upon peaking returns more slowly to prefeeding levels. The average maximum increase in metabolic rate stemming from digestion ranges from a modest 25% for humans to 136% for fishes, and to an impressive 687% for snakes. The type, size, composition, and temperature of the meal, as well as body size, body composition, and several environmental factors (e.g., ambient temperature and gas concentration) can each significantly impact the magnitude and duration of the SDA response. Meals that are large, intact or possess a tough exoskeleton require more digestive effort and thus generate a larger SDA than small, fragmented, or soft-bodied meals. Differences in the individual effort of preabsorptive (e.g., swallowing, gastric breakdown, and intestinal transport) and postabsorptive (e.g., catabolism and synthesis) events underlie much of the variation in SDA. Specific dynamic action is an integral part of an organism's energy budget, exemplified by accounting for 19-43% of the daily energy expenditure of free-ranging snakes. There are innumerable opportunities for research in SDA including coverage of unexplored taxa, investigating the underlying sources, determinants, and the central control of postprandial metabolism, and examining the integration of SDA across other physiological systems.

Dynamics of Unjammed Emulsions

NASA Astrophysics Data System (ADS)

Guerra, Rodrigo; Kodger, Thomas; Weitz, David

2014-03-01

Light scattering and NMR densitometry measurements of quiescent emulsions have shown that amorphous packings of soft, repulsive droplets unjam at osmotic pressures 105 times larger than the typical droplet thermal energy density: 3kB/T 4 πR3. This transition corresponds to the pressure at which the thermal fluctuations of individual droplet positions match the yield strain of the packing and drive the fluidization of the material. We use confocal microscopy to investigate the microscopic dynamics of this fluid-like phase and find them to be fundamentally different from those of conventional glass-forming liquids; cage-breaking dynamics are not evident from droplet mean squared displacements and the effective viscosity of the emulsion, though 105 larger than the background fluid, appears largely insensitive to the confining pressure.

Starburst Galaxies. III. Properties of a Radio-selected Sample

NASA Astrophysics Data System (ADS)

Smith, Denise A.; Herter, Terry; Haynes, Martha P.

1998-02-01

We have analyzed the properties of the 20 most radio-luminous UGC starburst galaxies from Condon, Frayer, & Broderick. Near-infrared images, spectra, and optical rotation curves were presented in Smith et al. In this paper, we use these data and published radio data to assess the stellar populations, dust contents, ionizing conditions, and dynamics of the starbursts. Certain properties of the star formation occurring in these galaxies differ from those observed locally. The infrared excesses (IREs) are lower than and span a narrower range of values than those of Galactic H II regions. The starbursts appear to produce a higher proportion of ionizing photons than most Galactic H II regions. Consequently, the initial mass functions (IMFs) of the starbursts may be more strongly biased toward high-mass star formation. The starbursts may also contain fewer old H II regions than the Milky Way. Furthermore, the starburst IRE is likely to be influenced by the presence of large reservoirs of gas that absorb a larger fraction of the Lyman continuum photons. The OB stellar and far-infrared luminosities imply that the upper mass range of the starburst IMF (M > 10 M⊙) is characterized by a slope of 2.7 +/- 0.2. The starburst IMF thus bears a strong similarity to that observed in Magellanic OB associations. Optical line ratios indicate that a range of excitation conditions are present. We conclude that the near-infrared light from many of the starbursts is dominated by a heavily obscured mixture of emission from evolved red stars and young blue stars with small contributions (~5%) from thermal gas and hot dust, under the assumptions that a Galactic or SMC extinction law can be applied to these systems and that the true reddening curve follows one of the models currently existing in the literature. In some cases, larger amounts of emission from blue stars or hot dust may be required to explain the observed near-infrared colors. The amount of dust emission exceeds that predicted from comparisons with Galactic H II regions. The near-infrared colors of some of the systems may also be influenced by the presence of a low-luminosity active galactic nucleus (AGN). Emission from blue stars and hot dust, if present, dilutes the observed CO index. The activity in the redder, more luminous systems is strongly peaked. The galaxies hosting the starbursts exhibit a wide range of morphological and star-forming properties. While all of the host galaxies are interacting systems, the nuclear separations of the interacting nuclei range from <1 kpc to >1 Mpc. The dynamical behavior ranges from relaxed to strongly perturbed. The off-nuclear regions of the galaxies are sites of active star formation and are characterized by a range of excitation conditions. Spatially extended LINER emission is consistent with shock excitation produced by superwinds or galaxy-galaxy collisions. Violent star formation activity occurs over a larger physical scale in the most active starbursts. Systems containing mergers and widely separated nuclei possess similar colors and luminosities. The burst properties are most likely regulated by the internal structures of the interacting galaxies and not the separations of the interacting galaxies. Observations at the Palomar Observatory were made as part of a continuing collaborative agreement between the California Institute of Technology and Cornell University.

Bioconvection in spatially extended domains

NASA Astrophysics Data System (ADS)

Karimi, A.; Paul, M. R.

2013-05-01

We numerically explore gyrotactic bioconvection in large spatially extended domains of finite depth using parameter values from available experiments with the unicellular alga Chlamydomonas nivalis. We numerically integrate the three-dimensional, time-dependent continuum model of Pedley [J. Fluid Mech.10.1017/S0022112088002393 195, 223 (1988)] using a high-order, parallel, spectral-element approach. We explore the long-time nonlinear patterns and dynamics found for layers with an aspect ratio of 10 over a range of Rayleigh numbers. Our results yield the pattern wavelength and pattern dynamics which we compare with available theory and experimental measurement. There is good agreement for the pattern wavelength at short times between numerics, experiment, and a linear stability analysis. At long times we find that the general sequence of patterns given by the nonlinear evolution of the governing equations correspond qualitatively to what has been described experimentally. However, at long times the patterns in numerics grow to larger wavelengths, in contrast to what is observed in experiment where the wavelength is found to decrease with time.

Evidence for X(3872) from DD* scattering on the lattice.

PubMed

Prelovsek, Sasa; Leskovec, Luka

2013-11-08

A candidate for the charmonium(like) state X(3872) is found 11±7 MeV below the DD* threshold using dynamical N(f)=2 lattice simulation with J(PC)=1(++) and I=0. This is the first lattice simulation that establishes a candidate for X(3872) in addition to the nearby scattering states DD* and J/ψω, which inevitably have to be present in dynamical QCD. We extract large and negative DD* scattering length a(0)(DD*)=-1.7±0.4 fm and the effective range r(0)(DD*)=0.5±0.1 fm, but their reliable determination will have to wait for a simulation on a larger volume. In I=1 channel, only the DD* and J/ψρ scattering states are found and no candidate for X(3872). This is in agreement with the interpretation that X(3872) is dominantly I=0, while its small I=1 component arises solely from the isospin breaking and is therefore absent in our simulation with m(u)=m(d).

Spherical harmonics analysis of surface density fluctuations of spherical ionic SDS and nonionic C12E8 micelles: A molecular dynamics study

NASA Astrophysics Data System (ADS)

Yoshii, Noriyuki; Nimura, Yuki; Fujimoto, Kazushi; Okazaki, Susumu

2017-07-01

The surface structure and its fluctuation of spherical micelles were investigated using a series of density correlation functions newly defined by spherical harmonics and Legendre polynomials based on the molecular dynamics calculations. To investigate the influence of head-group charges on the micelle surface structure, ionic sodium dodecyl sulfate and nonionic octaethyleneglycol monododecylether (C12E8) micelles were investigated as model systems. Large-scale density fluctuations were observed for both micelles in the calculated surface static structure factor. The area compressibility of the micelle surface evaluated by the surface static structure factor was tens-of-times larger than a typical value of a lipid membrane surface. The structural relaxation time, which was evaluated from the surface intermediate scattering function, indicates that the relaxation mechanism of the long-range surface structure can be well described by the hydrostatic approximation. The density fluctuation on the two-dimensional micelle surface has similar characteristics to that of three-dimensional fluids near the critical point.

Spherical harmonics analysis of surface density fluctuations of spherical ionic SDS and nonionic C12E8 micelles: A molecular dynamics study.

PubMed

Yoshii, Noriyuki; Nimura, Yuki; Fujimoto, Kazushi; Okazaki, Susumu

2017-07-21

The surface structure and its fluctuation of spherical micelles were investigated using a series of density correlation functions newly defined by spherical harmonics and Legendre polynomials based on the molecular dynamics calculations. To investigate the influence of head-group charges on the micelle surface structure, ionic sodium dodecyl sulfate and nonionic octaethyleneglycol monododecylether (C 12 E 8 ) micelles were investigated as model systems. Large-scale density fluctuations were observed for both micelles in the calculated surface static structure factor. The area compressibility of the micelle surface evaluated by the surface static structure factor was tens-of-times larger than a typical value of a lipid membrane surface. The structural relaxation time, which was evaluated from the surface intermediate scattering function, indicates that the relaxation mechanism of the long-range surface structure can be well described by the hydrostatic approximation. The density fluctuation on the two-dimensional micelle surface has similar characteristics to that of three-dimensional fluids near the critical point.

Zoom microscope objective using electrowetting lenses.

PubMed

Li, Lei; Wang, Di; Liu, Chao; Wang, Qiong-Hua

2016-02-08

We report a zoom microscope objective which can achieve continuous zoom change and correct the aberrations dynamically. The objective consists of three electrowetting liquid lenses and two glass lenses. The magnification is changed by applying voltages on the three electrowetting lenses. Besides, the three electrowetting liquid lenses can play a role to correct the aberrations. A digital microscope based on the proposed objective is demonstrated. We analyzed the properties of the proposed objective. In contrast to the conventional objectives, the proposed objective can be tuned from ~7.8 × to ~13.2 × continuously. For our objective, the working distance is fixed, which means no movement parts are needed to refocus or change its magnification. Moreover, the zoom objective can be dynamically optimized for a wide range of wavelength. Using such an objective, the fabrication tolerance of the optical system is larger than that of a conventional system, which can decrease the fabrication cost. The proposed zoom microscope objective cannot only take place of the conventional objective, but also has potential application in the 3D microscopy.

Exo-Milankovitch Cycles. I. Orbits and Rotation States

NASA Astrophysics Data System (ADS)

Deitrick, Russell; Barnes, Rory; Quinn, Thomas R.; Armstrong, John; Charnay, Benjamin; Wilhelm, Caitlyn

2018-02-01

The obliquity of the Earth, which controls our seasons, varies by only ∼2.°5 over ∼40,000 years, and its eccentricity varies by only ∼0.05 over 100,000 years. Nonetheless, these small variations influence Earth’s ice ages. For exoplanets, however, variations can be significantly larger. Previous studies of the habitability of moonless Earth-like exoplanets have found that high obliquities, high eccentricities, and dynamical variations can extend the outer edge of the habitable zone by preventing runaway glaciation (snowball states). We expand upon these studies by exploring the orbital dynamics with a semianalytic model that allows us to map broad regions of parameter space. We find that, in general, the largest drivers of obliquity variations are secular spin–orbit resonances. We show how the obliquity varies in several test cases, including Kepler-62 f, across a wide range of orbital and spin parameters. These obliquity variations, alongside orbital variations, will have a dramatic impact on the climates of such planets.

A reconfigurable visual-programming library for real-time closed-loop cellular electrophysiology

PubMed Central

Biró, István; Giugliano, Michele

2015-01-01

Most of the software platforms for cellular electrophysiology are limited in terms of flexibility, hardware support, ease of use, or re-configuration and adaptation for non-expert users. Moreover, advanced experimental protocols requiring real-time closed-loop operation to investigate excitability, plasticity, dynamics, are largely inaccessible to users without moderate to substantial computer proficiency. Here we present an approach based on MATLAB/Simulink, exploiting the benefits of LEGO-like visual programming and configuration, combined to a small, but easily extendible library of functional software components. We provide and validate several examples, implementing conventional and more sophisticated experimental protocols such as dynamic-clamp or the combined use of intracellular and extracellular methods, involving closed-loop real-time control. The functionality of each of these examples is demonstrated with relevant experiments. These can be used as a starting point to create and support a larger variety of electrophysiological tools and methods, hopefully extending the range of default techniques and protocols currently employed in experimental labs across the world. PMID:26157385

Continuous and dynamic spectral tuning of single nanowire lasers with subnanometer resolution using hydrostatic pressure

DOE PAGES

Liu, Sheng; Li, Changyi; Figiel, Jeffrey J.; ...

2015-04-27

In this paper, we report continuous, dynamic, reversible, and widely tunable lasing from 367 to 337 nm from single GaN nanowires (NWs) by applying hydrostatic pressure up to ~7 GPa. The GaN NW lasers, with heights of 4–5 μm and diameters ~140 nm, are fabricated using a lithographically defined two-step top-down technique. The wavelength tuning is caused by an increasing Γ direct bandgap of GaN with increasing pressure and is precisely controllable to subnanometer resolution. The observed pressure coefficients of the NWs are ~40% larger compared with GaN microstructures fabricated from the same material or from reported bulk GaN values,more » revealing a nanoscale-related effect that significantly enhances the tuning range using this approach. Finally, this approach can be generally applied to other semiconductor NW lasers to potentially achieve full spectral coverage from the UV to IR.« less

Interfacial mixing in high energy-density matter with a multiphysics kinetic model

NASA Astrophysics Data System (ADS)

Haack, Jeff; Hauck, Cory; Murillo, Michael

2017-10-01

We have extended a recently-developed multispecies, multitemperature BGK model to include multiphysics capability that allows modeling of a wider range of plasma conditions. In particular, we have extended the model to describe one spatial dimension, and included a multispecies atomic ionization model, accurate collision physics across coupling regimes, self-consistent electric fields, and degeneracy in the electronic screening. We apply the new model to a warm dense matter scenario in which the ablator-fuel interface of an inertial confinement fusion target is heated, similar to a recent molecular dynamics study, but for larger length and time scales and for much higher temperatures. From our numerical results we are able to explore a variety of phenomena, including hydrogen jetting, kinetic effects (non-Maxwellian and anisotropic distributions), plasma physics (size, persistence and role of electric fields) and transport (relative sizes of Fickean diffision, electrodiffusion and barodiffusion). As compared with the recent molecular dynamics work the kinetic model greatly extends the accessible physical domains we are able to model.

Confinement effects in premelting dynamics

NASA Astrophysics Data System (ADS)

Pramanik, Satyajit; Wettlaufer, John

2017-11-01

We examine the effects of confinement on the dynamics of premelted films driven by thermomolecular pressure gradients. Our approach is to modify a well-studied setting in which the thermomolecular pressure gradient is driven by a temperature gradient parallel to an interfacially premelted elastic wall. The modification treats the increase in viscosity associated with the thinning of films studied in a wide variety of materials using a power law and we examine the consequent evolution of the elastic wall. We treat (i) a range of interactions that are known to underlie interfacial premelting and (ii) a constant temperature gradient wherein the thermomolecular pressure gradient is a constant. The difference between the cases with and without the proximity effect arises in the volume flux of premelted liquid. The proximity effect increases the viscosity as the film thickness decreases thereby requiring the thermomolecular pressure driven flux to be accommodated at larger temperatures where the premelted film thickness is the largest. Implications for experiment and observations of frost heave are discussed.

Solar Flare Dynamic Microwave Imaging with EOVSA

NASA Astrophysics Data System (ADS)

Gary, D. E.; Chen, B.; Nita, G. M.; Fleishman, G. D.; Yu, S.; White, S. M.; Hurford, G. J.; McTiernan, J. M.

2017-12-01

The Expanded Owens Valley Solar Array (EOVSA) is both an expansion of our existing solar array and serves as a prototype for a much larger future project, the Frequency Agile Solar Radiotelescope (FASR). EOVSA is now complete, and is producing daily imaging of the full solar disk, including active regions and solar radio bursts at hundreds of frequencies in the range 2.8-18 GHz. We present highlights of the 1-s-cadence dynamic imaging spectroscropy of radio bursts we have obtained to date, along with deeper analysis of multi-wavelength observations and modeling of a well-observed burst. These observations are revealing the full life-cycle of the trapped population of high-energy electrons, from their initial acceleration and subsequent energy-evolution to their eventual decay through escape and thermalization. All of our data are being made available for download in both quick-look image form and in the form of the community-standard CASA measurement sets for subsequent imaging and analysis.

Peromyscus ranges at high and low population densities

USGS Publications Warehouse

Stickel, L.F.

1960-01-01

Live-trapping studies at the Patuxent Wildlife Research Center, Maryland, showed that the ranges of wood mice were larger when the population density was lower and smaller when the population density was higher. When the population density was about 1.3 male mice per acre in June 1954, the average distance recorded between traps after four or more captures was 258 feet. When the population density was about 4.1 male mice per acre in June 1957, the average distance was 119 feet. Differences were statistically significant. Females were so scarce at the low that comparisons could not be made for them. Examples from the literature also show that home range of a species may vary with population density. Other examples show that the range may vary with habitat, breeding condition and food supply. These variations in range size reduce the reliability of censuses in which relative methods are used: Lines of traps sample the population of a larger area when ranges are large than they do when ranges are small. Direct comparisons therefore will err in some degree. Error may be introduced also when line-trap data are transformed to per acre figures on the basis of home-range estimates made by area-trapping at another place or time. Variation in range size also can make it necessary to change area-trapping plans, for larger quadrants are needed when ranges are larger. It my be necessary to set traps closer together when ranges are small than when ranges are large.

Electromagnetic pulse-driven spin-dependent currents in semiconductor quantum rings.

PubMed

Zhu, Zhen-Gang; Berakdar, Jamal

2009-04-08

We investigate the non-equilibrium charge and spin-dependent currents in a quantum ring with a Rashba spin-orbit interaction (SOI) driven by two asymmetric picosecond electromagnetic pulses. The equilibrium persistent charge and persistent spin-dependent currents are investigated as well. It is shown that the dynamical charge and the dynamical spin-dependent currents vary smoothly with a static external magnetic flux and the SOI provides a SU(2) effective flux that changes the phases of the dynamic charge and the dynamic spin-dependent currents. The period of the oscillation of the total charge current with the delay time between the pulses is larger in a quantum ring with a larger radius. The parameters of the pulse fields control to a certain extent the total charge and the total spin-dependent currents. The calculations are applicable to nanometre rings fabricated in heterojunctions of III-V and II-VI semiconductors containing several hundreds of electrons.

Multiscale polar theory of microtubule and motor-protein assemblies

DOE PAGES

Gao, Tong; Blackwell, Robert; Glaser, Matthew A.; ...

2015-01-27

Microtubules and motor proteins are building blocks of self-organized subcellular biological structures such as the mitotic spindle and the centrosomal microtubule array. These same ingredients can form new “bioactive” liquid-crystalline fluids that are intrinsically out of equilibrium and which display complex flows and defect dynamics. It is not yet well understood how microscopic activity, which involves polarity-dependent interactions between motor proteins and microtubules, yields such larger-scale dynamical structures. In our multiscale theory, Brownian dynamics simulations of polar microtubule ensembles driven by cross-linking motors allow us to study microscopic organization and stresses. Polarity sorting and cross-link relaxation emerge as two polar-specificmore » sources of active destabilizing stress. On larger length scales, our continuum Doi-Onsager theory captures the hydrodynamic flows generated by polarity-dependent active stresses. Finally, the results connect local polar structure to flow structures and defect dynamics.« less

Computational Models of Protein Kinematics and Dynamics: Beyond Simulation

PubMed Central

Gipson, Bryant; Hsu, David; Kavraki, Lydia E.; Latombe, Jean-Claude

2016-01-01

Physics-based simulation represents a powerful method for investigating the time-varying behavior of dynamic protein systems at high spatial and temporal resolution. Such simulations, however, can be prohibitively difficult or lengthy for large proteins or when probing the lower-resolution, long-timescale behaviors of proteins generally. Importantly, not all questions about a protein system require full space and time resolution to produce an informative answer. For instance, by avoiding the simulation of uncorrelated, high-frequency atomic movements, a larger, domain-level picture of protein dynamics can be revealed. The purpose of this review is to highlight the growing body of complementary work that goes beyond simulation. In particular, this review focuses on methods that address kinematics and dynamics, as well as those that address larger organizational questions and can quickly yield useful information about the long-timescale behavior of a protein. PMID:22524225

Simulation of Particle Size Effect on Dynamic Properties and Fracture of PTFE-W-Al Composites

NASA Astrophysics Data System (ADS)

Herbold, Eric; Cai, Jing; Benson, David; Nesterenko, Vitali

2007-06-01

Recent investigations of the dynamic compressive strength of cold isostatically pressed (CIP) composites of polytetrafluoroethylene (PTFE), tungsten and aluminum powders show significant differences depending on the size of metallic particles. PTFE and aluminum mixtures are known to be energetic under dynamic and thermal loading. The addition of tungsten increases density and overall strength of the sample. Multi-material Eulerian and arbitrary Lagrangian-Eulerian methods were used for the investigation due to the complexity of the microstructure, relatively large deformations and the ability to handle the formation of free surfaces in a natural manner. The calculations indicate that the observed dependence of sample strength on particle size is due to the formation of force chains under dynamic loading in samples with small particle sizes even at larger porosity in comparison with samples with large grain size and larger density.

Scaling Effects of Riparian Peatlands on Stable Isotopes in Runoff and DOC Mobilization

NASA Astrophysics Data System (ADS)

Tetzlaff, D.; Tunaley, C.; Soulsby, C.

2016-12-01

We combined 13 months of daily isotope measurements in stream water with daily DOC and 15 minute FDOM (fluorescent component of dissolved organic matter) data at three nested scales to identify how riparian peatlands generate runoff and influence DOC dynamics in streams. We investigated how runoff generation processes in a small, riparian peatland dominated headwater catchment (0.65 km2) propagate to larger scales (3.2 km2 and 31 km2) with decreasing percentage of riparian peatland coverage. Isotope damping was most pronounced in the 0.65 km2 headwater catchment due to high water storage in the organic soils which encourage tracer mixing. At the largest scale, stream flow and water isotope dynamics showed a more flashy response. The isotopic difference between the sites was most pronounced in the summer months when stream water signatures were enriched. During the winter months, the inter-site difference reduced. The isotopes also revealed evaporative fractionation in the peatland dominated catchment, in particular during summer low flows, which implied high hydrological connectivity in form of constant seepage from the peatlands sustaining high baseflows at the headwater scale. This connectivity resulted in high DOC concentrations at the peatland site during baseflow ( 5 mg l-1). In contrast, at the larger scales, DOC was minimal during low flows ( 2 mg l-1) due to increased groundwater influence and the disconnection between DOC sources and the stream. High frequency data also revealed diel variability during low flows. Insights into event dynamics through the analysis of hysteresis loops showed slight dilution on the rising limb, the strong influence of dry antecedent conditions and a quick recovery between events at the riparian peatland site. Again, these dynamics are driven by the tight coupling and high connectivity of the landscape to the stream. At larger scales, the disconnection between the landscape units increase and the variable connectivity controls runoff generation and DOC dynamics. The results presented here suggest that the processes occurring in riparian peatlands in headwater catchments are less evident at larger scales which may have implications for the larger scale impact of peatland restoration projects.

Scaling effects of riparian peatlands on stable isotopes in runoff and DOC mobilisation

NASA Astrophysics Data System (ADS)

Tunaley, C.; Tetzlaff, D.; Soulsby, C.

2017-06-01

We combined 13 months of daily isotope measurements in stream water with daily DOC and 15 min FDOM (fluorescent component of dissolved organic matter) data at three nested scales to identify how riparian peatlands generate runoff and influence DOC dynamics in streams. We investigated how runoff generation processes in a small, riparian peatland-dominated headwater catchment (0.65 km2) propagate to larger scales (3.2 km2 and 31 km2) with decreasing percentage of riparian peatland coverage. Isotope damping was most pronounced in the 0.65 km2 headwater catchment due to high water storage in the organic soils encouraging tracer mixing. At the largest scale, stream flow and water isotope dynamics showed a more flashy response. The isotopic difference between the sites was most pronounced in the summer months when stream water signatures were enriched. During the winter months, the inter-site difference reduced. The isotopes also revealed evaporative fractionation in the peatland dominated catchment, in particular during summer low flows, which implied high hydrological connectivity in the form of constant seepage from the peatlands sustaining high baseflows at the headwater scale. This connectivity resulted in high DOC concentrations at the peatland site during baseflow (∼5 mg l-1). In contrast, at the larger scales, DOC was minimal during low flows (∼2 mg l-1) due to increased groundwater influence and the disconnection between DOC sources and the stream. High frequency data also revealed diel variability during low flows. Insights into event dynamics through the analysis of hysteresis loops showed slight dilution on the rising limb, the strong influence of dry antecedent conditions and a quick recovery between events at the riparian peatland site. Again, these dynamics are driven by the tight coupling and high connectivity of the landscape to the stream. At larger scales, the disconnection between the landscape units increases and the variable connectivity controls runoff generation and DOC dynamics. The results presented here suggest that the processes occurring in riparian peatlands in headwater catchments are less evident at larger scales which may have implications for the larger scale impact of peatland restoration projects.

Acute Effects of Dynamic Stretching on Muscle Flexibility and Performance: An Analysis of the Current Literature.

PubMed

Opplert, Jules; Babault, Nicolas

2018-02-01

Stretching has long been used in many physical activities to increase range of motion (ROM) around a joint. Stretching also has other acute effects on the neuromuscular system. For instance, significant reductions in maximal voluntary strength, muscle power or evoked contractile properties have been recorded immediately after a single bout of static stretching, raising interest in other stretching modalities. Thus, the effects of dynamic stretching on subsequent muscular performance have been questioned. This review aimed to investigate performance and physiological alterations following dynamic stretching. There is a substantial amount of evidence pointing out the positive effects on ROM and subsequent performance (force, power, sprint and jump). The larger ROM would be mainly attributable to reduced stiffness of the muscle-tendon unit, while the improved muscular performance to temperature and potentiation-related mechanisms caused by the voluntary contraction associated with dynamic stretching. Therefore, if the goal of a warm-up is to increase joint ROM and to enhance muscle force and/or power, dynamic stretching seems to be a suitable alternative to static stretching. Nevertheless, numerous studies reporting no alteration or even performance impairment have highlighted possible mitigating factors (such as stretch duration, amplitude or velocity). Accordingly, ballistic stretching, a form of dynamic stretching with greater velocities, would be less beneficial than controlled dynamic stretching. Notwithstanding, the literature shows that inconsistent description of stretch procedures has been an important deterrent to reaching a clear consensus. In this review, we highlight the need for future studies reporting homogeneous, clearly described stretching protocols, and propose a clarified stretching terminology and methodology.

Solution NMR views of dynamical ordering of biomacromolecules.

PubMed

Ikeya, Teppei; Ban, David; Lee, Donghan; Ito, Yutaka; Kato, Koichi; Griesinger, Christian

2018-02-01

To understand the mechanisms related to the 'dynamical ordering' of macromolecules and biological systems, it is crucial to monitor, in detail, molecular interactions and their dynamics across multiple timescales. Solution nuclear magnetic resonance (NMR) spectroscopy is an ideal tool that can investigate biophysical events at the atomic level, in near-physiological buffer solutions, or even inside cells. In the past several decades, progress in solution NMR has significantly contributed to the elucidation of three-dimensional structures, the understanding of conformational motions, and the underlying thermodynamic and kinetic properties of biomacromolecules. This review discusses recent methodological development of NMR, their applications and some of the remaining challenges. Although a major drawback of NMR is its difficulty in studying the dynamical ordering of larger biomolecular systems, current technologies have achieved considerable success in the structural analysis of substantially large proteins and biomolecular complexes over 1MDa and have characterised a wide range of timescales across which biomolecular motion exists. While NMR is well suited to obtain local structure information in detail, it contributes valuable and unique information within hybrid approaches that combine complementary methodologies, including solution scattering and microscopic techniques. For living systems, the dynamic assembly and disassembly of macromolecular complexes is of utmost importance for cellular homeostasis and, if dysregulated, implied in human disease. It is thus instructive for the advancement of the study of the dynamical ordering to discuss the potential possibilities of solution NMR spectroscopy and its applications. This article is part of a Special Issue entitled "Biophysical Exploration of Dynamical Ordering of Biomolecular Systems" edited by Dr. Koichi Kato. Copyright © 2017 Elsevier B.V. All rights reserved.

Infrared dynamics of minimal walking technicolor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Del Debbio, Luigi; Lucini, Biagio; Patella, Agostino

2010-07-01

We study the gauge sector of minimal walking technicolor, which is an SU(2) gauge theory with n{sub f}=2 flavors of Wilson fermions in the adjoint representation. Numerical simulations are performed on lattices N{sub t}xN{sub s}{sup 3}, with N{sub s} ranging from 8 to 16 and N{sub t}=2N{sub s}, at fixed {beta}=2.25, and varying the fermion bare mass m{sub 0}, so that our numerical results cover the full range of fermion masses from the quenched region to the chiral limit. We present results for the string tension and the glueball spectrum. A comparison of mesonic and gluonic observables leads to themore » conclusion that the infrared dynamics is given by an SU(2) pure Yang-Mills theory with a typical energy scale for the spectrum sliding to zero with the fermion mass. The typical mesonic mass scale is proportional to and much larger than this gluonic scale. Our findings are compatible with a scenario in which the massless theory is conformal in the infrared. An analysis of the scaling of the string tension with the fermion mass toward the massless limit allows us to extract the chiral condensate anomalous dimension {gamma}{sub *}, which is found to be {gamma}{sub *}=0.22{+-}0.06.« less

A conceptual framework for addressing complexity and unfolding transition dynamics when developing sustainable adaptation strategies in urban water management.

PubMed

Fratini, C F; Elle, M; Jensen, M B; Mikkelsen, P S

2012-01-01

To achieve a successful and sustainable adaptation to climate change we need to transform the way we think about change. Much water management research has focused on technical innovation with a range of new solutions developed to achieve a 'more sustainable and integrated urban water management cycle'. But Danish municipalities and utility companies are struggling to bring such solutions into practice. 'Green infrastructure', for example, requires the consideration of a larger range of aspects related to the urban context than the traditional urban water system optimization. There is the need for standardized methods and guidelines to organize transdisciplinary processes where different types of knowledge and perspectives are taken into account. On the basis of the macro-meso-micro pattern inspired by complexity science and transition theory, we developed a conceptual framework to organize processes addressing the complexity characterizing urban water management in the context of climate change. In this paper the framework is used to organize a research process aiming at understanding and unfolding urban dynamics for sustainable transition. The final goal is to enable local authorities and utilities to create the basis for managing and catalysing the technical and organizational innovation necessary for a sustainable transition towards climate change adaptation in urban areas.

Stacking and Branching in Self-Aggregation of Caffeine in Aqueous Solution: From the Supramolecular to Atomic Scale Clustering.

PubMed

Tavagnacco, Letizia; Gerelli, Yuri; Cesàro, Attilio; Brady, John W

2016-09-22

The dynamical and structural properties of caffeine solutions at the solubility limit have been investigated as a function of temperature by means of MD simulations, static and dynamic light scattering, and small angle neutron scattering experiments. A clear picture unambiguously supported by both experiment and simulation emerges: caffeine self-aggregation promotes the formation of two distinct types of clusters: linear aggregates of stacked molecules, formed by 2-14 caffeine molecules depending on the thermodynamic conditions and disordered branched aggregates with a size in the range 1000-3000 Å. While the first type of association is well-known to occur under room temperature conditions for both caffeine and other purine systems, such as nucleotides, the presence of the supramolecular aggregates has not been reported previously. MD simulations indicate that branched structures are formed by caffeine molecules in a T-shaped arrangement. An increase of the solubility limit (higher temperature but also higher concentration) broadens the distribution of cluster sizes, promoting the formation of stacked aggregates composed by a larger number of caffeine molecules. Surprisingly, the effect on the branched aggregates is rather limited. Their internal structure and size do not change considerably in the range of solubility limits investigated.

Periodic homogenization and consistent estimates of transport parameters through sphere and polyhedron packings in the whole porosity range.

PubMed

Boutin, Claude; Geindreau, Christian

2010-09-01

This paper presents a study of transport parameters (diffusion, dynamic permeability, thermal permeability, trapping constant) of porous media by combining the homogenization of periodic media (HPM) and the self-consistent scheme (SCM) based on a bicomposite spherical pattern. The link between the HPM and SCM approaches is first established by using a systematic argument independent of the problem under consideration. It is shown that the periodicity condition can be replaced by zero flux and energy through the whole surface of the representative elementary volume. Consequently the SCM solution can be considered as a geometrical approximation of the local problem derived through HPM for materials such that the morphology of the period is "close" to the SCM pattern. These results are then applied to derive the estimates of the effective diffusion, the dynamic permeability, the thermal permeability and the trapping constant of porous media. These SCM estimates are compared with numerical HPM results obtained on periodic arrays of spheres and polyhedrons. It is shown that SCM estimates provide good analytical approximations of the effective parameters for periodic packings of spheres at porosities larger than 0.6, while the agreement is excellent for periodic packings of polyhedrons in the whole range of porosity.

Expanding zooplankton standing stock estimation from meso- to metazooplankton: A case study in the N. Aegean Sea (Mediterranean Sea)

NASA Astrophysics Data System (ADS)

Frangoulis, Constantin; Grigoratou, Maria; Zoulias, Theodore; Hannides, Cecelia C. S.; Pantazi, Maria; Psarra, Stella; Siokou, Ioanna

2017-10-01

Although metazooplankton includes a wide size range of organisms, our knowledge is essentially based on mesozooplankton. A first estimation of the metazooplankton standing stock in a Mediterranean area, and of its size fractions and functional groups are provided by combining data out of three nets with different mesh sizes (45, 200 and 500 μm). Data were collected along a gradient of oligotrophy in the frontal area created, where the waters of Black Sea origin meet those of Levantine Sea origin (Northeast Aegean Sea, Eastern Mediterranean). Metazooplankton biomass was dominated by mesozooplankton (0.2-2 mm), while meso- and microzooplankton (<0.2 mm) shared dominance of abundance. Copepods dominated both in abundance and biomass and were followed by nauplii in abundance and gelatinous carnivores or decapod-euphausiid larvae in biomass. The spatiotemporal variability of metazoans stock, biomass-size spectra linearity, carnivorous group contribution and copepod diversity, supported that metazooplankton tends to recede from steady-state when approaching less oligotrophic dynamic areas (such as fronts) or dynamic periods (such as the spring bloom). The need and the difficulties of obtaining a larger picture from a wider size range of metazoans for understanding the role of zooplankton are stressed.

Electric field determination in the plasma-antenna boundary of a lower-hybrid wave launcher in Tore Supra through dynamic Stark-effect spectroscopy

NASA Astrophysics Data System (ADS)

Martin, E. H.; Goniche, M.; Klepper, C. C.; Hillairet, J.; Isler, R. C.; Bottereau, C.; Colas, L.; Ekedahl, A.; Panayotis, S.; Pegourie, B.; Lotte, Ph; Colledani, G.; Caughman, J. B.; Harris, J. H.; Hillis, D. L.; Shannon, S. C.; Clairet, F.; Litaudon, X.

2015-06-01

Interaction of radio-frequency (RF) waves with the plasma in the near-field of a high-power wave launcher is now seen to be an important topic, both in understanding the channeling of these waves through the plasma boundary and in avoiding power losses in the edge. In a recent Letter, a direct non-intrusive measurement of a near antenna RF electric field in the range of lower hybrid (LH) frequencies (ELH) was announced (2013 Phys. Rev. Lett. 110 215005). This measurement was achieved through the fitting of Balmer series deuterium spectral lines utilizing a time dependent (dynamic) Stark effect model. In this article, the analysis of the spectral data is discussed in detail and applied to a larger range of measurements and the accuracy and limitations of the experimental technique are investigated. It was found through an analysis of numerous Tore Supra discharges that good quantitative agreement exists between the measured and full-wave modeled ELH when the launched power exceeds 0.5 MW. For low power the measurement becomes inaccurate utilizing the implemented passive spectroscopic technique because the spectral noise overwhelms the effect of the RF electric field on the line profile. Additionally, effects of the ponderomotive force are suspected at sufficiently high power.

Role of surfactants in carbon nanotubes density gradient separation.

PubMed

Carvalho, Elton J F; dos Santos, Maria Cristina

2010-02-23

Several strategies aimed at sorting single-walled carbon nanotubes (SWNT) by diameter and/or electronic structure have been developed in recent years. A nondestructive sorting method was recently proposed in which nanotube bundles are dispersed in water-surfactant solutions and submitted to ultracentrifugation in a density gradient. By this method, SWNTs of different diameters are distributed according to their densities along the centrifuge tube. A mixture of two anionic amphiphiles, namely sodium dodecylsulfate (SDS) and sodium cholate (SC), presented the best performance in discriminating nanotubes by diameter. We present molecular dynamics studies of the water-surfactant-SWNT system. The simulations revealed one aspect of the discriminating power of surfactants: they can actually be attracted toward the interior of the nanotube cage. The binding energies of SDS and SC on the outer nanotube surface are very similar and depend weakly on diameter. The binding inside the tubes, on the contrary, is strongly diameter dependent: SDS fits best inside tubes with diameters ranging from 8 to 9 A, while SC is best accommodated in larger tubes, with diameters in the range 10.5-12 A. The dynamics at room temperature showed that, as the amphiphile moves to the hollow cage, water molecules are dragged together, thereby promoting the nanotube filling. The resulting densities of filled SWNT are in agreement with measured densities.

Titan's stratospheric temperature asymmetry: a radiative origin?

PubMed

Bézard, B; Coustenis, A; McKay, C P

1995-02-01

During the 1981 Voyager encounter, Titan's stratosphere exhibited a large thermal asymmetry, with high northern latitudes being colder than comparable southern latitudes. Given the short radiative time constant, this asymmetry would not be expected at the season of the Voyager observations (spring equinox), if the infrared and solar opacity sources were distributed symmetrically. We have investigated the radiative budget of Titan's stratosphere, using two selections of Voyager IRIS spectra recorded at symmetric northern and southern latitudes. In the region 0.1-1 mbar, temperatures are 7 K colder at 50 degrees N than at 53 degrees S and the difference reaches approximately 13 K at 5 mbar. On the other hand, the northern region is strongly enriched in nitriles and hydrocarbons, and the haze optical depth derived from the continuum emission between 8 and 15 micrometers is twice as large as in the south. Cooling rate profiles have been computed at the two locations, using the gas and haze abundances derived from the IRIS measurements. We find that, despite lower temperatures, the cooling rate profiles in the pressure range 0.15-5 mbar are 20 to 40% larger in the north than in the south, because of the enhanced concentrations of infrared radiators. Because the northern hemisphere appears darker than the southern one in the Voyager images, enhanced solar heating is also expected to take place at 50 degrees N. Solar heating rate profiles have been calculated, with two different assumptions on the origin of the hemispheric asymmetry. In the most likely case where it results from a variation in the absorbance of the haze material, the heating rates are found to be 12-15% larger at the northern location than at the southern one, a smaller increase than that in the cooling rates. If the lower albedo in the north results from an increase in the particle number density, a 55 to 75% difference is found for the pressure range 0.15-5 mbar, thus larger than that calculated for the cooling rates. Considering the uncertainties in the haze model, dynamical heat transport may significantly contribute to the meridional temperature gradients observed in the stratosphere. On the other hand, the latitudinal variation in gas and haze composition may be sufficient to explain the entire temperature asymmetry observed, without invoking a lag in the thermal response of the atmosphere due to dynamical inertia.

First-principles melting of gallium clusters down to nine atoms: structural and electronic contributions to melting.

PubMed

Steenbergen, Krista G; Gaston, Nicola

2013-10-07

First-principles Born-Oppenheimer molecular dynamics simulations of small gallium clusters, including parallel tempering, probe the distinction between cluster and molecule in the size range of 7-12 atoms. In contrast to the larger sizes, dynamic measures of structural change at finite temperature demonstrate that Ga7 and Ga8 do not melt, suggesting a size limit to melting in gallium exists at 9 atoms. Analysis of electronic structure further supports this size limit, additionally demonstrating that a covalent nature cannot be identified for clusters larger than the gallium dimer. Ga9, Ga10 and Ga11 melt at greater-than-bulk temperatures, with no evident covalent character. As Ga12 represents the first small gallium cluster to melt at a lower-than-bulk temperature, we examine the structural properties of each cluster at finite temperature in order to probe both the origins of greater-than-bulk melting, as well as the significant differences in melting temperatures induced by a single atom addition. Size-sensitive melting temperatures can be explained by both energetic and entropic differences between the solid and liquid phases for each cluster. We show that the lower-than-bulk melting temperature of the 12-atom cluster can be attributed to persistent pair bonding, reminiscent of the pairing observed in α-gallium. This result supports the attribution of greater-than-bulk melting in gallium clusters to the anomalously low melting temperature of the bulk, due to its dimeric structure.

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context

PubMed Central

Faith, Jeremiah J; Olson, Andrew J; Gardner, Timothy S; Sachidanandam, Ravi

2007-01-01

Background Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of larger genome browsers, while relying on standard flat-file formats and bypassing the database needs of most visualization tools. Visualization as an aide to discovery requires display of novel data in conjunction with static annotations in their chromosomal context. With database-based systems, displaying dynamic results requires temporary tables that need to be tracked for removal. Results lwgv simplifies the visualization of user-generated results on a local computer. The dynamic results of these analyses are written to transient files, which can import static content from a more permanent file. lwgv is currently used in many different applications, from whole genome browsers to single-gene RNAi design visualization, demonstrating its applicability in a large variety of contexts and scales. Conclusion lwgv provides a lightweight alternative to large genome browsers for visualizing biological annotations and dynamic analyses in their chromosomal context. It is particularly suited for applications ranging from short sequences to medium-sized genomes when the creation and maintenance of a large software and database infrastructure is not necessary or desired. PMID:17877794

Elasto-Inertial Turbulence: From Subcritical Turbulence to Maximum Drag Reduction

NASA Astrophysics Data System (ADS)

Dubief, Yves; Sid, Samir; Egan, Raphael; Terrapon, Vincent

2015-11-01

Elasto Inertial Turbulence (EIT) is a turbulence state found so far in polymer solutions. Upon the appropriate initial perturbation, an autonomous regeneration cycle emerges between polymer dynamics, pressure and velocity fluctuations. This cycle is best explained by the Poisson equation derived from viscoelastic flow models such as FENE-P (used in this study). This presentation provides an overview of the structure of EIT in 2D channel flows for Reynolds numbers ranging from Reτ = 10 to 100 and for 3D simulations up to Ret au = 300 . For flows below the Newtonian critical Reynolds number, EIT increases the drag. For higher Reynolds numbers, EIT is surmised to be the energetic bound of Maximum Drag Reduction (MDR), the asymptotic state of drag reduction in polymer solutions. The very existence of EIT at low Reynolds numbers (Reτ < 60) highlights a backward energy transfer from the small scale polymer dynamics to larger flow scales. Similar dynamics is identified at higher Reynolds numbers, which could explain why polymer flows never become fully laminar. The authors acknowledge computational resources from CÉCI (F.R.S.-FNRS grant No.2.5020.11), the PRACE infrastructure, and the Vermont Advanced Computing Core.

Underlying dynamics of typical fluctuations of an emerging market price index: The Heston model from minutes to months

NASA Astrophysics Data System (ADS)

Vicente, Renato; de Toledo, Charles M.; Leite, Vitor B. P.; Caticha, Nestor

2006-02-01

We investigate the Heston model with stochastic volatility and exponential tails as a model for the typical price fluctuations of the Brazilian São Paulo Stock Exchange Index (IBOVESPA). Raw prices are first corrected for inflation and a period spanning 15 years characterized by memoryless returns is chosen for the analysis. Model parameters are estimated by observing volatility scaling and correlation properties. We show that the Heston model with at least two time scales for the volatility mean reverting dynamics satisfactorily describes price fluctuations ranging from time scales larger than 20 min to 160 days. At time scales shorter than 20 min we observe autocorrelated returns and power law tails incompatible with the Heston model. Despite major regulatory changes, hyperinflation and currency crises experienced by the Brazilian market in the period studied, the general success of the description provided may be regarded as an evidence for a general underlying dynamics of price fluctuations at intermediate mesoeconomic time scales well approximated by the Heston model. We also notice that the connection between the Heston model and Ehrenfest urn models could be exploited for bringing new insights into the microeconomic market mechanics.

Prediction of the reference evapotranspiration using a chaotic approach.

PubMed

Wang, Wei-guang; Zou, Shan; Luo, Zhao-hui; Zhang, Wei; Chen, Dan; Kong, Jun

2014-01-01

Evapotranspiration is one of the most important hydrological variables in the context of water resources management. An attempt was made to understand and predict the dynamics of reference evapotranspiration from a nonlinear dynamical perspective in this study. The reference evapotranspiration data was calculated using the FAO Penman-Monteith equation with the observed daily meteorological data for the period 1966-2005 at four meteorological stations (i.e., Baotou, Zhangbei, Kaifeng, and Shaoguan) representing a wide range of climatic conditions of China. The correlation dimension method was employed to investigate the chaotic behavior of the reference evapotranspiration series. The existence of chaos in the reference evapotranspiration series at the four different locations was proved by the finite and low correlation dimension. A local approximation approach was employed to forecast the daily reference evapotranspiration series. Low root mean square error (RSME) and mean absolute error (MAE) (for all locations lower than 0.31 and 0.24, resp.), high correlation coefficient (CC), and modified coefficient of efficiency (for all locations larger than 0.97 and 0.8, resp.) indicate that the predicted reference evapotranspiration agrees well with the observed one. The encouraging results indicate the suitableness of chaotic approach for understanding and predicting the dynamics of the reference evapotranspiration.

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

PubMed

Faith, Jeremiah J; Olson, Andrew J; Gardner, Timothy S; Sachidanandam, Ravi

2007-09-18

Lightweight genome viewer (lwgv) is a web-based tool for visualization of sequence annotations in their chromosomal context. It performs most of the functions of larger genome browsers, while relying on standard flat-file formats and bypassing the database needs of most visualization tools. Visualization as an aide to discovery requires display of novel data in conjunction with static annotations in their chromosomal context. With database-based systems, displaying dynamic results requires temporary tables that need to be tracked for removal. lwgv simplifies the visualization of user-generated results on a local computer. The dynamic results of these analyses are written to transient files, which can import static content from a more permanent file. lwgv is currently used in many different applications, from whole genome browsers to single-gene RNAi design visualization, demonstrating its applicability in a large variety of contexts and scales. lwgv provides a lightweight alternative to large genome browsers for visualizing biological annotations and dynamic analyses in their chromosomal context. It is particularly suited for applications ranging from short sequences to medium-sized genomes when the creation and maintenance of a large software and database infrastructure is not necessary or desired.

Charge Dynamics and Bending Actuation in Aquivion Membrane Swelled with Ionic Liquids.

PubMed

Lin, Junhong; Liu, Yang; Zhang, Q M

2011-01-21

The actuation strain and speed of ionic electroactive polymer (EAP) actuators are mainly determined by the charge transport through the actuators and excess ion storage near the electrodes. We employ a recently developed theory on ion transport and storage to investigate the charge dynamics of short-side-chain Aquivion® (Hyflon®) membranes with different uptakes of ionic liquid (IL) 1-ethyl-3-methylimidazolium trifluoromethanesulfonate (EMI-Tf). The results reveal the existence of a critical uptake of ionic liquids above which the membrane exhibit a high ionic conductivity (σ>5×10(-2) mS/cm). Especially, we investigate the charge dynamics under voltages which are in the range for practical device operation (~1 volts and higher). The results show that the ionic conductivity, ionic mobility, and mobile ion concentration do not change with the applied voltage below 1 volt (and for σ below 4 volts). The results also show that bending actuation of the Aquivion membrane with 40 wt% EMI-Tf is much larger than that of Nafion, indicating that the shorter flexible side chains improve the electromechanical coupling between the excess ions and the membrane backbones, while not affect the actuation speed.

Charge Dynamics and Bending Actuation in Aquivion Membrane Swelled with Ionic Liquids

PubMed Central

Lin, Junhong; Liu, Yang; Zhang, Q. M.

2011-01-01

The actuation strain and speed of ionic electroactive polymer (EAP) actuators are mainly determined by the charge transport through the actuators and excess ion storage near the electrodes. We employ a recently developed theory on ion transport and storage to investigate the charge dynamics of short-side-chain Aquivion® (Hyflon®) membranes with different uptakes of ionic liquid (IL) 1-ethyl-3-methylimidazolium trifluoromethanesulfonate (EMI-Tf). The results reveal the existence of a critical uptake of ionic liquids above which the membrane exhibit a high ionic conductivity (σ>5×10−2 mS/cm). Especially, we investigate the charge dynamics under voltages which are in the range for practical device operation (~1 volts and higher). The results show that the ionic conductivity, ionic mobility, and mobile ion concentration do not change with the applied voltage below 1 volt (and for σ below 4 volts). The results also show that bending actuation of the Aquivion membrane with 40 wt% EMI-Tf is much larger than that of Nafion, indicating that the shorter flexible side chains improve the electromechanical coupling between the excess ions and the membrane backbones, while not affect the actuation speed. PMID:21339839

Very Accurate Imaging of the Close Environment of Bright Objects in Visible and Near-Infrared

NASA Astrophysics Data System (ADS)

Mouillet, David; Beuzit, Jean-Luc; Chauvin, Gael; Lagrange, Anne-Marie

The development of adaptive optics (AO) in near IR has demonstrated in the latest decade both its astronomical impact and its increasing importance with the development of larger telescopes. We emphasize that still better imaging capabilities would extend the wavelength range from near-IR to visible and would also enable to perform very high dynamic observations from the ground. Such a gain in performance is interesting for a large number of astrophysical topics: environment of young stellar objects, evolved stars, binary or multiple systems, planetary disks and low mass companions down to brown dwarves or hot planets. The specification of an instrument fulfilling such requirements could be focussed on high image quality on a narrow field around bright objects, so as to limit the cost and development timescale. Additionally, this facility could also be used (with the same specifications) to feed other future instruments (such as interferometers or high resolution spectrometers working in visible) and would be an important step in the general scheme of larger adaptive optics systems development.

Larger than Life's Extremes: Rigorous Results for Simplified Rules and Speculation on the Phase Boundaries

NASA Astrophysics Data System (ADS)

Evans, Kellie Michele

Larger than Life (LtL), is a four-parameter family of two-dimensional cellular automata that generalizes John Conway's Game of Life (Life) to large neighborhoods and general birth and survival thresholds. LtL was proposed by David Griffeath in the early 1990s to explore whether Life might be a clue to a critical phase point in the threshold-range scaling limit. The LtL family of rules includes Life as well as a rich set of two-dimensional rules, some of which exhibit dynamics vastly different from Life. In this chapter we present rigorous results and conjectures about the ergodic classifications of several sets of "simplified" LtL rules, each of which has a property that makes the rule easier to analyze. For example, these include symmetric rules such as the threshold voter automaton and the anti-voter automaton, monotone rules such as the threshold growth models, and others. We also provide qualitative results and speculation about LtL rules on various phase boundaries and summarize results and open questions about our favorite "Life-like" LtL rules.

The Effective Dynamic Ranges for Glaucomatous Visual Field Progression With Standard Automated Perimetry and Stimulus Sizes III and V.

PubMed

Wall, Michael; Zamba, Gideon K D; Artes, Paul H

2018-01-01

It has been shown that threshold estimates below approximately 20 dB have little effect on the ability to detect visual field progression in glaucoma. We aimed to compare stimulus size V to stimulus size III, in areas of visual damage, to confirm these findings by using (1) a different dataset, (2) different techniques of progression analysis, and (3) an analysis to evaluate the effect of censoring on mean deviation (MD). In the Iowa Variability in Perimetry Study, 120 glaucoma subjects were tested every 6 months for 4 years with size III SITA Standard and size V Full Threshold. Progression was determined with three complementary techniques: pointwise linear regression (PLR), permutation of PLR, and linear regression of the MD index. All analyses were repeated on "censored'' datasets in which threshold estimates below a given criterion value were set to equal the criterion value. Our analyses confirmed previous observations that threshold estimates below 20 dB contribute much less to visual field progression than estimates above this range. These findings were broadly similar with stimulus sizes III and V. Censoring of threshold values < 20 dB has relatively little impact on the rates of visual field progression in patients with mild to moderate glaucoma. Size V, which has lower retest variability, performs at least as well as size III for longitudinal glaucoma progression analysis and appears to have a larger useful dynamic range owing to the upper sensitivity limit being higher.

Measurements of the frame acoustic properties of porous and granular materials

NASA Astrophysics Data System (ADS)

Park, Junhong

2005-12-01

For porous and granular materials, the dynamic characteristics of the solid component (frame) are important design factors that significantly affect the material's acoustic properties. The primary goal of this study was to present an experimental method for measuring the vibration characteristics of this frame. The experimental setup was designed to induce controlled vibration of the solid component while minimizing the influence from coupling between vibrations of the fluid and the solid component. The Biot theory was used to verify this assumption, taking the two dilatational wave propagations and interactions into account. The experimental method was applied to measure the dynamic properties of glass spheres, lightweight microspheres, acoustic foams, and fiberglass. A continuous variation of the frame vibration characteristics with frequency similar to that of typical viscoelastic materials was measured. The vibration amplitude had minimal effects on the dynamic characteristics of the porous material compared to those of the granular material. For the granular material, materials comprised of larger particles and those under larger vibration amplitudes exhibited lower frame wave speeds and larger decay rates.

Femtosecond Measurements Of Size-Dependent Spin Crossover In FeII(pyz)Pt(CN)4 Nanocrystals

DOE PAGES

Sagar, D. M.; Baddour, Frederick G.; Konold, Patrick; ...

2016-01-07

We report a femtosecond time-resolved spectroscopic study of size-dependent dynamics in nanocrystals (NCs) of Fe(pyz)Pt(CN) 4. We observe that smaller NCs (123 or 78 nm cross section and < 25 nm thickness) exhibit signatures of spin crossover (SCO) with time constants of ~ 5-10 ps whereas larger NCs with 375 nm cross section and 43 nm thickness exhibit a weaker SCO signature accompanied by strong spectral shifting on a ~20 ps time scale. For the small NCs, the fast dynamics appear to result from thermal promotion of residual low-spin states to high-spin states following nonradiative decay, and the size dependencemore » is postulated to arise from differing high-spin vs low-spin fractions in domains residing in strained surface regions. The SCO is less efficient in larger NCs owing to their larger size and hence lower residual LS/HS fractions. Our results suggest that size-dependent dynamics can be controlled by tuning surface energy in NCs with dimensions below ~25 nm for use in energy harvesting, spin switching, and other applications.« less

A disposable tear glucose biosensor--part 3: assessment of enzymatic specificity.

PubMed

Lan, Kenneth; McAferty, Kenyon; Shah, Pankti; Lieberman, Erica; Patel, Dharmendra R; Cook, Curtiss B; La Belle, Jeffrey T

2011-09-01

A concept for a tear glucose sensor based on amperometric measurement of enzymatic oxidation of glucose was previously presented, using glucose dehydrogenase flavin adenine dinucleotide (GDH-FAD) as the enzyme. Glucose dehydrogenase flavin adenine dinucleotide is further characterized in this article and evaluated for suitability in glucose-sensing applications in purified tear-like saline, with specific attention to the effect of interfering substances only. These interferents are specifically saccharides that could interact with the enzymatic activity seen in the sensor's performance. Bench top amperometric glucose assays were performed using an assay solution of GDH-FAD and ferricyanide redox mediator with samples of glucose, mannose, lactose, maltose, galactose, fructose, sucrose, and xylose at varying concentrations to evaluate specificity, linear dynamic range, signal size, and signal-to-noise ratio. A comparison study was done by substituting an equivalent activity unit concentration of glucose oxidase (GOx) for GDH-FAD. Glucose dehydrogenase flavin adenine dinucleotide was found to be more sensitive than GOx, producing larger oxidation currents than GOx on an identical glucose concentration gradient, and GDH-FAD exhibited larger slope response (-5.65 × 10(-7) versus -3.11 × 10(-7) A/mM), signal-to-noise ratio (18.04 versus 2.62), and linear dynamic range (0-30 versus 0-10 mM), and lower background signal (-7.12 versus -261.63 nA) than GOx under the same assay conditions. GDH-FAD responds equally to glucose and xylose but is otherwise specific for glucose. Glucose dehydrogenase flavin adenine dinucleotide compares favorably with GOx in many sensor-relevant attributes and may enable measurement of glucose concentrations both higher and lower than those measurable by GOx. GDH-FAD is a viable enzyme to use in the proposed amperometric tear glucose sensor system and perhaps also in detecting extreme hypoglycemia or hyperglycemia in blood. © 2011 Diabetes Technology Society.

A Disposable Tear Glucose Biosensor—Part 3: Assessment of Enzymatic Specificity

PubMed Central

Lan, Kenneth; McAferty, Kenyon; Shah, Pankti; Lieberman, Erica; Patel, Dharmendra R; Cook, Curtiss B; La Belle, Jeffrey T

2011-01-01

Background A concept for a tear glucose sensor based on amperometric measurement of enzymatic oxidation of glucose was previously presented, using glucose dehydrogenase flavin adenine dinucleotide (GDH-FAD) as the enzyme. Glucose dehydrogenase flavin adenine dinucleotide is further characterized in this article and evaluated for suitability in glucose-sensing applications in purified tear-like saline, with specific attention to the effect of interfering substances only. These interferents are specifically saccharides that could interact with the enzymatic activity seen in the sensor's performance. Methods Bench top amperometric glucose assays were performed using an assay solution of GDH-FAD and ferricyanide redox mediator with samples of glucose, mannose, lactose, maltose, galactose, fructose, sucrose, and xylose at varying concentrations to evaluate specificity, linear dynamic range, signal size, and signal-to-noise ratio. A comparison study was done by substituting an equivalent activity unit concentration of glucose oxidase (GOx) for GDH-FAD. Results Glucose dehydrogenase flavin adenine dinucleotide was found to be more sensitive than GOx, producing larger oxidation currents than GOx on an identical glucose concentration gradient, and GDH-FAD exhibited larger slope response (-5.65 × 10-7 versus -3.11 × 10-7 A/mM), signal-to-noise ratio (18.04 versus 2.62), and linear dynamic range (0–30 versus 0–10 mM), and lower background signal (-7.12 versus -261.63 nA) than GOx under the same assay conditions. GDH-FAD responds equally to glucose and xylose but is otherwise specific for glucose. Conclusion Glucose dehydrogenase flavin adenine dinucleotide compares favorably with GOx in many sensor-relevant attributes and may enable measurement of glucose concentrations both higher and lower than those measurable by GOx. GDH-FAD is a viable enzyme to use in the proposed amperometric tear glucose sensor system and perhaps also in detecting extreme hypoglycemia or hyperglycemia in blood. PMID:22027303

Surface area of montmorillonite from the dynamic sorption of nitrogen and carbon dioxide

USGS Publications Warehouse

Thomas, Josephus; Bohor, Bruce F.

1968-01-01

Surface area determinations were made on a montmorillonite with various cations emplaced on the exchangeable sites, utilizing nitrogen and carbon dioxide as adsorbates at 77°K and 195°K, respectively, in a dynamic system. From the fraction of a Mississippi montmorillonite less than about 1 μ in size, samples were prepared by replacing the original exchangeable cations with Li+, Na+, K+, Rb+, Cs+, Mg++, Ca++, Ba++, and NH4+, forming a series of homoionic montmorillonite species.Surface areas from 3-point B.E.T. plots (half-hour adsorption points), with nitrogen as the adsorbate, ranged from 61 m2/g for Li-montmorillonite to 138 m2/g for Cs-montmorillonite, thus reflecting a certain degree of nitrogen penetration between layers. Complete penetration should theoretically result in a surface area of over 300 m2/g for this clay with a nitrogen monolayer between each pair of platelets. The experimental data indicate that the extent of penetration is time-dependent and is also a function of the interlayer forces as governed by the size and charge of the replaceable cation. This finding negates the generally accepted concept that nitrogen at 77°K does not penetrate the layers and provides a measure only of the external surface of expandable clay minerals.A further measure of the variation of interlayer forces is provided by the adsorption of carbon dioxide at 195°K. Surface area values ranged from 99 m2/g for Li-montmorillonite to 315 m2/g for Csmontmorillonite. Although the carbon dioxide molecule is larger than the nitrogen molecule, its greater penetration apparently is a result of its being kinetically more energetic (with a larger diffusion coefficient) at its higher adsorption temperature. Similar differences have been found with both adsorbates in the study of microporous substances, such as coal, where activated diffusion is of considerable significance.

Forests growing under dry conditions have higher hydrological resilience to drought than do more humid forests.

PubMed

Helman, David; Lensky, Itamar M; Yakir, Dan; Osem, Yagil

2017-07-01

More frequent and intense droughts are projected during the next century, potentially changing the hydrological balances in many forested catchments. Although the impacts of droughts on forest functionality have been vastly studied, little attention has been given to studying the effect of droughts on forest hydrology. Here, we use the Budyko framework and two recently introduced Budyko metrics (deviation and elasticity) to study the changes in the water yields (rainfall minus evapotranspiration) of forested catchments following a climatic drought (2006-2010) in pine forests distributed along a rainfall gradient (P = 280-820 mm yr -1 ) in the Eastern Mediterranean (aridity factor = 0.17-0.56). We use a satellite-based model and meteorological information to calculate the Budyko metrics. The relative water yield ranged from 48% to 8% (from the rainfall) in humid to dry forests and was mainly associated with rainfall amount (increasing with increased rainfall amount) and bedrock type (higher on hard bedrocks). Forest elasticity was larger in forests growing under drier conditions, implying that drier forests have more predictable responses to drought, according to the Budyko framework, compared to forests growing under more humid conditions. In this context, younger forests were shown more elastic than older forests. Dynamic deviation, which is defined as the water yield departure from the Budyko curve, was positive in all forests (i.e., less-than-expected water yields according to Budyko's curve), increasing with drought severity, suggesting lower hydrological resistance to drought in forests suffering from larger rainfall reductions. However, the dynamic deviation significantly decreased in forests that experienced relatively cooler conditions during the drought period. Our results suggest that forests growing under permanent dry conditions might develop a range of hydrological and eco-physiological adjustments to drought leading to higher hydrological resilience. In the context of predicted climate change, such adjustments are key factors in sustaining forested catchments in water-limited regions. © 2016 John Wiley & Sons Ltd.

Stoichiometric vs hydroclimatic controls on soil biogeochemical processes

NASA Astrophysics Data System (ADS)

Manzoni, Stefano; Porporato, Amilcare

2010-05-01

Soil nutrient cycles are controlled by both stoichiometric constraints (e.g., carbon to nutrient ratios) and hydroclimatic conditions (e.g., soil moisture and temperature). Both controls tend to act in a nonlinear manner and give rise to complex dynamics in soil biogeochemistry at different space-time scales. We first review the theoretical basis of soil biogeochemical models, looking for the general principles underlying these models across space-time scales and scientific disciplines. By comparing more than 250 models, we show that similar kinetic and stoichiometric laws, formulated to mechanistically represent the complex biochemical constraints to decomposition, are common to most models, providing a basis for their classification. Moreover, a historic analysis reveals that the complexity (e.g., phase space dimension, model architecture) and degree and number of nonlinearities generally increased with date, while they decreased with increasing spatial and temporal scale of interest. Soil biogeochmical dynamics may be suitable conceptualized using a number of compartments (e.g., decomposers, organic substrates, inorganic ions) interacting among each other at rates that depend (nonlinearly) on climatic drivers. As a consequence, hydroclimatic-induced fluctuations at the daily scale propagate through the various soil compartments leading to cascading effects ranging from short-term fluctuations in the smaller pools to long-lasting changes in the larger ones. Such cascading effects are known to occur in dryland ecosystems, and are increasingly being recongnized to control the long-term carbon and nutrient balances in more mesic ecosystems. We also show that separating biochemical from climatic impacts on organic matter decomposition results in universal curves describing data of plant residue decomposition and nutrient mineralization across the globe. Future extensions to larger spatial scales and managed ecosystems are also briefly outlined. It is critical that future modeling efforts carefully account for the scale-dependence of their mathematical formulations, especially when applied to a wide range of scales.

Landscape-scale forest disturbance regimes in southern Peruvian Amazonia.

PubMed

Boyd, Doreen S; Hill, Ross A; Hopkinson, Chris; Baker, Timothy R

2013-10-01

Landscape-scale gap-size frequency distributions in tropical forests are a poorly studied but key ecological variable. Currently, a scale gap currently exists between local-scale field-based studies and those employing regional-scale medium-resolution satellite data. Data at landscape scales but of fine resolution would, however, facilitate investigation into a range of ecological questions relating to gap dynamics. These include whether canopy disturbances captured in permanent sample plots (PSPs) are representative of those in their surrounding landscape, and whether disturbance regimes vary with forest type. Here, therefore, we employ airborne LiDAR data captured over 142.5 km2 of mature, swamp, and regenerating forests in southeast Peru to assess the landscape-scale disturbance at a sampling resolution of up to 2 m. We find that this landscape is characterized by large numbers of small gaps; large disturbance events are insignificant and infrequent. Of the total number of gaps that are 2 m2 or larger in area, just 0.45% were larger than 100 m2, with a power-law exponent (alpha) value of the gap-size frequency distribution of 2.22. However, differences in disturbance regimes are seen among different forest types, with a significant difference in the alpha value of the gap-size frequency distribution observed for the swamp/regenerating forests compared with the mature forests at higher elevations. Although a relatively small area of the total forest of this region was investigated here, this study presents an unprecedented assessment of this landscape with respect to its gap dynamics. This is particularly pertinent given the range of forest types present in the landscape and the differences observed. The coupling of detailed insights into forest properties and growth provided by PSPs with the broader statistics of disturbance events using remote sensing is recommended as a strong basis for scaling-up estimates of landscape and regional-scale carbon balance.

Dynamic Response and Residual Helmet Liner Crush Using Cadaver Heads and Standard Headforms.

PubMed

Bonin, S J; Luck, J F; Bass, C R; Gardiner, J C; Onar-Thomas, A; Asfour, S S; Siegmund, G P

2017-03-01

Biomechanical headforms are used for helmet certification testing and reconstructing helmeted head impacts; however, their biofidelity and direct applicability to human head and helmet responses remain unclear. Dynamic responses of cadaver heads and three headforms and residual foam liner deformations were compared during motorcycle helmet impacts. Instrumented, helmeted heads/headforms were dropped onto the forehead region against an instrumented flat anvil at 75, 150, and 195 J. Helmets were CT scanned to quantify maximum liner crush depth and crush volume. General linear models were used to quantify the effect of head type and impact energy on linear acceleration, head injury criterion (HIC), force, maximum liner crush depth, and liner crush volume and regression models were used to quantify the relationship between acceleration and both maximum crush depth and crush volume. The cadaver heads generated larger peak accelerations than all three headforms, larger HICs than the International Organization for Standardization (ISO), larger forces than the Hybrid III and ISO, larger maximum crush depth than the ISO, and larger crush volumes than the DOT. These significant differences between the cadaver heads and headforms need to be accounted for when attempting to estimate an impact exposure using a helmet's residual crush depth or volume.

Scale transition using dislocation dynamics and the nudged elastic band method

DOE PAGES

Sobie, Cameron; Capolungo, Laurent; McDowell, David L.; ...

2017-08-01

Microstructural features such as precipitates or irradiation-induced defects impede dislocation motion and directly influence macroscopic mechanical properties such as yield point and ductility. In dislocation-defect interactions both atomic scale and long range elastic interactions are involved. Thermally assisted dislocation bypass of obstacles occurs when thermal fluctuations and driving stresses contribute sufficient energy to overcome the energy barrier. The Nudged Elastic Band (NEB) method is typically used in the context of atomistic simulations to quantify the activation barriers for a given reaction. In this work, the NEB method is generalized to coarse-grain continuum representations of evolving microstructure states beyond the discretemore » particle descriptions of first principles and atomistics. The method we employed enables the calculation of activation energies for a View the MathML source glide dislocation bypassing a [001] self-interstitial atom loop of size in the range of 4-10 nm with a spacing larger than 150nm in α-iron for a range of applied stresses and interaction geometries. This study is complemented by a comparison between atomistic and continuum based prediction of barriers.« less

Controls on Water Storage, Mixing and Release in a Nested Catchment Set-up with Clean and Mixed Physiographic Characteristics

NASA Astrophysics Data System (ADS)

Pfister, L.; McDonnell, J.; Hissler, C.; Martínez-Carreras, N.; Klaus, J.

2015-12-01

With catchment water storage being only rarely determined, storage dynamics remain largely unknown to date. However, storage bears considerable potential for catchment inter-comparison exercises, as well as it is likely to have an important role in regulating catchment functions. Catchment comparisons across a wide range of environments and scales will help to increase our understanding of relationships between storage dynamics and catchment processes. With respect to the potential of catchment storage for bringing new momentum to catchment classification and catchment processes understanding we currently investigate spatial and temporal variability of dynamic storage in a nested catchment set-up (16 catchments) of the Alzette River basin (Luxembourg, Europe), covering a wide range of geological settings, catchment areas, contrasted landuse, and hydro-meteorological and tracer series. We define catchment storage as the total amount of water stored in a control volume, delimited by the catchment's topographical boundaries and depth of saturated and unsaturated zones. Complementary storage assessments (via input-output dynamics of natural tracers, geographical sounding, groundwater level measurements, soil moisture measurements, hydrometry) are carried out for comparison purposes. In our nested catchment set-up we have (1) assessed dependencies between geology, catchment permeability and winter runoff coefficients, (2) calculated water balance derived catchment storage and mixing potential and quantified how dynamic storage differs between catchments and scales, and (3) examined how stream baseflow dD (as a proxy for baseflow transit time) and integrated flow measures (like the flow duration curve) relate to bedrock geology. Catchments with higher bedrock permeability exhibited larger storage capacities and eventually lower average winter runoff coefficients. Over a time-span of 11 years, all catchments re-produced the same winter runoff coefficients year after year, regardless of their bedrock geology, permeability and winter season storage filling ratios. Ultimately, catchment organisation in our area of interest (i.e. geology, permeability, flowpath length) appeared to have a strong control on winter runoff coefficients, catchment storage and subsequently baseflow dD.

Comparison of glomerular filtration rate determined by use of single-slice dynamic computed tomography and scintigraphy in cats.

PubMed

Schmidt, David M; Scrivani, Peter V; Dykes, Nathan L; Goldstein, Richard M; Erb, Hollis N; Reeves, Anthony P

2012-04-01

To compare estimation of glomerular filtration rate determined via conventional methods (ie, scintigraphy and plasma clearance of technetium Tc 99m pentetate) and dynamic single-slice computed tomography (CT). 8 healthy adult cats. Scintigraphy, plasma clearance testing, and dynamic CT were performed on each cat on the same day; order of examinations was randomized. Separate observers performed GFR calculations for scintigraphy, plasma clearance testing, or dynamic CT. Methods were compared via Bland-Altman plots and considered interchangeable and acceptable when the 95% limits of agreement (mean difference between methods ± 1.96 SD of the differences) were ≤ 0.7 mL/min/kg. Global GFR differed < 0.7 mL/min/kg in 5 of 8 cats when comparing plasma clearance testing and dynamic CT; the limits of agreement were 1.4 and -1.7 mL/min/kg. The mean ± SD difference was -0.2 ± 0.8 mL/min/kg, and the maximum difference was 1.6 mL/min/kg. The mean ± SD difference (absolute value) for percentage filtration by individual kidneys was 2.4 ± 10.5% when comparing scintigraphy and dynamic CT; the maximum difference was 20%, and the limits of agreement were 18% and 23% (absolute value). GFR estimation via dynamic CT exceeded the definition for acceptable clinical use, compared with results for conventional methods, which was likely attributable to sample size and preventable technical complications. Because 5 of 8 cats had comparable values between methods, further investigation of dynamic CT in a larger sample population with a wide range of GFR values should be performed.

Working-Memory Load and Temporal Myopia in Dynamic Decision Making

ERIC Educational Resources Information Center

Worthy, Darrell A.; Otto, A. Ross; Maddox, W. Todd

2012-01-01

We examined the role of working memory (WM) in dynamic decision making by having participants perform decision-making tasks under single-task or dual-task conditions. In 2 experiments participants performed dynamic decision-making tasks in which they chose 1 of 2 options on each trial. The decreasing option always gave a larger immediate reward…

A Dynamic Differentiation Framework for Talent Enhancement: Findings from Syntheses and Teachers' Perspectives

ERIC Educational Resources Information Center

Smith, Susen

2015-01-01

Differentiating curriculum and pedagogy is a dynamic process that is dependent on the interrelationship between intrapersonal and environmental factors that can support the unique educational needs of gifted students. A Model of Dynamic Differentiation (MoDD) was developed from a larger study based on the ecological systems theory, an in-depth…

Home range and movements of Feral cats on Mauna Kea, Hawai'i

USGS Publications Warehouse

Goltz, Dan M.; Hess, S.C.; Brinck, K.W.; Banko, P.C.; Danner, R.M.

2008-01-01

Feral cats Felis catus in dry subalpine woodland of Mauna Kea, Hawai'i, live in low density and exhibit some of the largest reported home ranges in the literature. While 95% fixed kemel home range estimates for three females averaged 772 ha, four males averaged 1 418 ha, and one male maintained a home range of 2 050 ha. Mean daily movement rates between sexes overlapped widely and did not differ significantly (P = 0.083). Log-transformed 95% kernel home ranges for males were significantly larger than those of females (P = 0.024), but 25% kernel home ranges for females were larger than those of males (P = 0.017). Moreover, log-transformed home ranges of males were also significantly larger than those of females in this and seven other studies from the Pacific region (P = 0.044). Feral cats present a major threat to endangered Hawaiian birds, but knowledge of their ecology can be used for management by optimizing trap spacing and creating buffer zones around conservation areas.

Nonlinear dynamic range transformation in visual communication channels.

PubMed

Alter-Gartenberg, R

1996-01-01

The article evaluates nonlinear dynamic range transformation in the context of the end-to-end continuous-input/discrete processing/continuous-display imaging process. Dynamic range transformation is required when we have the following: (i) the wide dynamic range encountered in nature is compressed into the relatively narrow dynamic range of the display, particularly for spatially varying irradiance (e.g., shadow); (ii) coarse quantization is expanded to the wider dynamic range of the display; and (iii) nonlinear tone scale transformation compensates for the correction in the camera amplifier.

Home range areas and activity patterns of red tree voles (Arborimus longicaudus) in western Oregon

Treesearch

James K. Swingle; Eric D. Forsman

2009-01-01

We radiocollared 45 red tree voles (Arborimus longicaudus) in western Oregon and monitored their movements during July 2002-September 2003. We predicted that home range areas would be larger in young forests than in old forests and that males would have larger home ranges and use more nests than females. We tracked individual voles for 82 ± 9 days...

Evaluation of detector dynamic range in the x-ray exposure domain in mammography: a comparison between film-screen and flat panel detector systems.

PubMed

Cooper, Virgil N; Oshiro, Thomas; Cagnon, Christopher H; Bassett, Lawrence W; McLeod-Stockmann, Tyler M; Bezrukiy, Nikita V

2003-10-01

Digital detectors in mammography have wide dynamic range in addition to the benefit of decoupled acquisition and display. How wide the dynamic range is and how it compares to film-screen systems in the clinical x-ray exposure domain are unclear. In this work, we compare the effective dynamic ranges of film-screen and flat panel mammography systems, along with the dynamic ranges of their component image receptors in the clinical x-ray exposure domain. An ACR mammography phantom was imaged using variable mAs (exposure) values for both systems. The dynamic range of the contrast-limited film-screen system was defined as that ratio of mAs (exposure) values for a 26 kVp Mo/Mo (HVL=0.34 mm Al) beam that yielded passing phantom scores. The same approach was done for the noise-limited digital system. Data from three independent observers delineated a useful phantom background optical density range of 1.27 to 2.63, which corresponded to a dynamic range of 2.3 +/- 0.53. The digital system had a dynamic range of 9.9 +/- 1.8, which was wider than the film-screen system (p<0.02). The dynamic range of the film-screen system was limited by the dynamic range of the film. The digital detector, on the other hand, had an estimated dynamic range of 42, which was wider than the dynamic range of the digital system in its entirety by a factor of 4. The generator/tube combination was the limiting factor in determining the digital system's dynamic range.

Bimodal Exciplex Formation in Bimolecular Photoinduced Electron Transfer Revealed by Ultrafast Time-Resolved Infrared Absorption.

PubMed

Koch, Marius; Licari, Giuseppe; Vauthey, Eric

2015-09-03

The dynamics of a moderately exergonic photoinduced charge separation has been investigated by ultrafast time-resolved infrared absorption with the dimethylanthracene/phthalonitrile donor/acceptor pair in solvents covering a broad range of polarity. A distinct spectral signature of an exciplex could be identified in the -C≡N stretching region. On the basis of quantum chemistry calculations, the 4-5 times larger width of this band compared to those of the ions and of the locally excited donor bands is explained by a dynamic distribution of exciplex geometry with different mutual orientations and distances of the constituents and, thus, with varying charge-transfer character. Although spectrally similar, two types of exciplexes could be distinguished by their dynamics: short-lived, "tight", exciplexes generated upon static quenching and longer-lived, "loose", exciplexes formed upon dynamic quenching in parallel with ion pairs. Tight exciplexes were observed in all solvents, except in the least polar diethyl ether where quenching is slower than diffusion. The product distribution of the dynamic quenching depends strongly on the solvent polarity: whereas no significant loose exciplex population could be detected in acetonitrile, both exciplex and ion pair are generated in less polar solvents, with the relative population of exciplex increasing with decreasing solvent polarity. These results are compared with those reported previously with donor/acceptor pairs in different driving force regimes to obtain a comprehensive picture of the role of the exciplexes in bimolecular photoinduced charge separation.

Whole-body angular momentum during stair walking using passive and powered lower-limb prostheses.

PubMed

Pickle, Nathaniel T; Wilken, Jason M; Aldridge, Jennifer M; Neptune, Richard R; Silverman, Anne K

2014-10-17

Individuals with a unilateral transtibial amputation have a greater risk of falling compared to able-bodied individuals, and falling on stairs can lead to serious injuries. Individuals with transtibial amputations have lost ankle plantarflexor muscle function, which is critical for regulating whole-body angular momentum to maintain dynamic balance. Recently, powered prostheses have been designed to provide active ankle power generation with the goal of restoring biological ankle function. However, the effects of using a powered prosthesis on the regulation of whole-body angular momentum are unknown. The purpose of this study was to use angular momentum to evaluate dynamic balance in individuals with a transtibial amputation using powered and passive prostheses relative to able-bodied individuals during stair ascent and descent. Ground reaction forces, external moment arms, and joint powers were also investigated to interpret the angular momentum results. A key result was that individuals with an amputation had a larger range of sagittal-plane angular momentum during prosthetic limb stance compared to able-bodied individuals during stair ascent. There were no significant differences in the frontal, transverse, or sagittal-plane ranges of angular momentum or maximum magnitude of the angular momentum vector between the passive and powered prostheses during stair ascent or descent. These results indicate that individuals with an amputation have altered angular momentum trajectories during stair walking compared to able-bodied individuals, which may contribute to an increased fall risk. The results also suggest that a powered prosthesis provides no distinct advantage over a passive prosthesis in maintaining dynamic balance during stair walking. Copyright © 2014 Elsevier Ltd. All rights reserved.

The fundamentally different dynamics of dust and gas in molecular clouds

NASA Astrophysics Data System (ADS)

Hopkins, Philip F.; Lee, Hyunseok

2016-03-01

We study the behaviour of large dust grains in turbulent molecular clouds (MCs). In primarily neutral regions, dust grains move as aerodynamic particles, not necessarily with the gas. We therefore directly simulate, for the first time, the behaviour of aerodynamic grains in highly supersonic, magnetohydrodynamic turbulence typical of MCs. We show that, under these conditions, grains with sizes a ≳ 0.01 micron exhibit dramatic (exceeding factor ˜1000) fluctuations in the local dust-to-gas ratio (implying large small-scale variations in abundances, dust cooling rates, and dynamics). The dust can form highly filamentary structures (which would be observed in both dust emission and extinction), which can be much thinner than the characteristic width of gas filaments. Sometimes, the dust and gas filaments are not even in the same location. The `clumping factor' < n_dust2 > / < n_dust > 2 of the dust (critical for dust growth/coagulation/shattering) can reach ˜100, for grains in the ideal size range. The dust clustering is maximized around scales ˜ 0.2 pc (a/μm) (ngas/100 cm- 3)- 1, and is `averaged out' on larger scales. However, because the density varies widely in supersonic turbulence, the dynamic range of scales (and interesting grain sizes) for these fluctuations is much broader than in the subsonic case. Our results are applicable to MCs of essentially all sizes and densities, but we note how Lorentz forces and other physics (neglected here) may change them in some regimes. We discuss the potentially dramatic consequences for star formation, dust growth and destruction, and dust-based observations of MCs.

Collective dynamics of soft active particles

NASA Astrophysics Data System (ADS)

van Drongelen, Ruben; Pal, Anshuman; Goodrich, Carl P.; Idema, Timon

2015-03-01

We present a model of soft active particles that leads to a rich array of collective behavior found also in dense biological swarms of bacteria and other unicellular organisms. Our model uses only local interactions, such as Vicsek-type nearest-neighbor alignment, short-range repulsion, and a local boundary term. Changing the relative strength of these interactions leads to migrating swarms, rotating swarms, and jammed swarms, as well as swarms that exhibit run-and-tumble motion, alternating between migration and either rotating or jammed states. Interestingly, although a migrating swarm moves slower than an individual particle, the diffusion constant can be up to three orders of magnitude larger, suggesting that collective motion can be highly advantageous, for example, when searching for food.

Method and apparatus for analog signal conditioner for high speed, digital x-ray spectrometer

DOEpatents

Warburton, W.K.; Hubbard, B.

1999-02-09

A signal processing system which accepts input from an x-ray detector-preamplifier and produces a signal of reduced dynamic range for subsequent analog-to-digital conversion is disclosed. The system conditions the input signal to reduce the number of bits required in the analog-to-digital converter by removing that part of the input signal which varies only slowly in time and retaining the amplitude of the pulses which carry information about the x-rays absorbed by the detector. The parameters controlling the signal conditioner`s operation can be readily supplied in digital form, allowing it to be integrated into a feedback loop as part of a larger digital x-ray spectroscopy system. 13 figs.

Viscosity and compressibility of diacylglycerol under high pressure

NASA Astrophysics Data System (ADS)

Malanowski, Aleksander; Rostocki, A. J.; Kiełczyński, P.; Szalewski, M.; Balcerzak, A.; Kościesza, R.; Tarakowski, R.; Ptasznik, S.; Siegoczyński, R. M.

2013-03-01

The influence of high pressure on viscosity and compressibility of diacylglycerol (DAG) oil has been presented in this paper. The investigated DAG oil was composed of 82% of DAGs and 18% TAGs (triacylglycerols). The dynamic viscosity of DAG was investigated as a function of the pressure up to 400 MPa. The viscosity was measured by means of the surface acoustic wave method, where the acoustic waveguides were used as sensing elements. As the pressure was rising, the larger ultrasonic wave attenuation was observed, whereas amplitude decreased with the liquid viscosity augmentation. Measured changes of physical properties were most significant in the pressure range near the phase transition. Deeper understanding of DAG viscosity and compressibility changes versus pressure could shed more light on thermodynamic properties of edible oils.

Color naming: color scientists do it between Munsell sheets of color

NASA Astrophysics Data System (ADS)

Beretta, Giordano B.; Moroney, Nathan M.

2010-01-01

With the advent of high dynamic range imaging and wide gamut color spaces, gamut mapping algorithms have to nudge image colors much more drastically to constrain them within a rendering device's gamut. Classical colorimetry is concerned with color matching and the developed color difference metrics are for small distances. For larger distances, categorization becomes a more useful concept. In the gamut mapping case, lexical distance induced by color names is a more useful metric, which translates to the condition that a nudged color may not cross a name boundary. The new problem is to find these color name boundaries. We compare the experimental procedures used for color naming by linguists, ethnologists, and color scientists and propose a methodology that leads to robust repeatable experiments.

On controlling networks of limit-cycle oscillators

NASA Astrophysics Data System (ADS)

Skardal, Per Sebastian; Arenas, Alex

2016-09-01

The control of network-coupled nonlinear dynamical systems is an active area of research in the nonlinear science community. Coupled oscillator networks represent a particularly important family of nonlinear systems, with applications ranging from the power grid to cardiac excitation. Here, we study the control of network-coupled limit cycle oscillators, extending the previous work that focused on phase oscillators. Based on stabilizing a target fixed point, our method aims to attain complete frequency synchronization, i.e., consensus, by applying control to as few oscillators as possible. We develop two types of controls. The first type directs oscillators towards larger amplitudes, while the second does not. We present numerical examples of both control types and comment on the potential failures of the method.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Rumeng; Wang, Lifeng, E-mail: walfe@nuaa.edu.cn

The nonlinear thermal vibration behavior of a single-walled carbon nanotube (SWCNT) is investigated by molecular dynamics simulation and a nonlinear, nonplanar beam model. Whirling motion with energy transfer between flexural motions is found in the free vibration of the SWCNT excited by the thermal motion of atoms where the geometric nonlinearity is significant. A nonlinear, nonplanar beam model considering the coupling in two vertical vibrational directions is presented to explain the whirling motion of the SWCNT. Energy in different vibrational modes is not equal even over a time scale of tens of nanoseconds, which is much larger than the periodmore » of fundamental natural vibration of the SWCNT at equilibrium state. The energy of different modes becomes equal when the time scale increases to the microsecond range.« less

Damage Accumulation in Silica Glass Nanofibers.

PubMed

Bonfanti, Silvia; Ferrero, Ezequiel E; Sellerio, Alessandro L; Guerra, Roberto; Zapperi, Stefano

2018-06-06

The origin of the brittle-to-ductile transition, experimentally observed in amorphous silica nanofibers as the sample size is reduced, is still debated. Here we investigate the issue by extensive molecular dynamics simulations at low and room temperatures for a broad range of sample sizes, with open and periodic boundary conditions. Our results show that small sample-size enhanced ductility is primarily due to diffuse damage accumulation, that for larger samples leads to brittle catastrophic failure. Surface effects such as boundary fluidization contribute to ductility at room temperature by promoting necking, but are not the main driver of the transition. Our results suggest that the experimentally observed size-induced ductility of silica nanofibers is a manifestation of finite-size criticality, as expected in general for quasi-brittle disordered networks.

Nonequilibrium carrier dynamics in transition metal dichalcogenide semiconductors

NASA Astrophysics Data System (ADS)

Steinhoff, A.; Florian, M.; Rösner, M.; Lorke, M.; Wehling, T. O.; Gies, C.; Jahnke, F.

2016-09-01

When exploring new materials for their potential in (opto)electronic device applications, it is important to understand the role of various carrier interaction and scattering processes. In atomically thin transition metal dichalcogenide semiconductors, the Coulomb interaction is known to be much stronger than in quantum wells of conventional semiconductors like GaAs, as witnessed by the 50 times larger exciton binding energy. The question arises, whether this directly translates into equivalently faster carrier-carrier Coulomb scattering of excited carriers. Here we show that a combination of ab initio band-structure and many-body theory predicts Coulomb-mediated carrier relaxation on a sub-100 fs time scale for a wide range of excitation densities, which is less than an order of magnitude faster than in quantum wells.

Commissioning of the CMS Hadron Forward Calorimeters Phase I Upgrade

NASA Astrophysics Data System (ADS)

Bilki, B.; Onel, Y.

2018-03-01

The final phase of the CMS Hadron Forward Calorimeters Phase I Upgrade was performed during the Extended Year End Technical Stop of 2016-2017. In the framework of the upgrade, the PMT boxes were reworked to implement two channel readout in order to exploit the benefits of the multi-anode PMTs in background tagging and signal recovery. The front-end electronics were also upgraded to QIE10-based electronics which implement larger dynamic range and a 6-bit TDC. Following this major upgrade, the Hadron Forward Calorimeters were commissioned for operation readiness in 2017. Here we describe the details and the components of the upgrade, and discuss the operational experience and results obtained during the upgrade and commissioning.

High dynamic range emission measurements of shocked energetic materials: Octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX)

NASA Astrophysics Data System (ADS)

Bassett, Will P.; Dlott, Dana D.

2016-06-01

A new emission apparatus with high time resolution and high dynamic range was used to study shock-induced ignition of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine in the form of ultrafine powder (4 ± 3 μm particle size), over a range of impact velocities (0.8-4.3 km s-1) and impact durations (2.5-16 ns). A graybody model was used to extract graybody emissivities and time-dependent temperatures from a few ns to 100 μs. The emission transients consisted of three parts: a 6700 K nanosecond burst during the shocks, a 4000-4500 K temperature spike near 0.3 μs followed by a ˜3300 K tail extending out to ˜100 μs. These temperatures varied remarkably little with impact velocity and duration, while the emission intensities and emissivities changed by over an order of magnitude. The emissivity changes were interpreted with a hot spot model, where hot spot temperatures reached a maximum of 6700 K and the hot spot volume fractions increased from 5% to 100% as impact velocity increased from 1 to 3 km s-1. Changing shock durations in the 2.5-16 ns range had noticeable effects on the microsecond emission. The 0.3 μs temperature spike was much smaller or absent with 2.5 ns shocks, but prominent with longer durations. An explanation for these effects was put forth that invoked the formation of carbon-rich clusters during the shock. In this view, cluster formation was minimal with 2.5 ns shocks, but longer-duration shocks produced increasingly larger clusters, and the 0.3 μs temperature spikes represented cluster ignition.

Liquid film drag out in the presence of molecular forces

NASA Astrophysics Data System (ADS)

Schmidhalter, I.; Cerro, R. L.; Giavedoni, M. D.; Saita, F. A.

2013-03-01

From a practical as well as a conceptual point of view, one of the most interesting problems of physicochemical hydrodynamics is the drag out of a liquid film by a moving solid out of a pool of liquid. The basic problem, sometimes denoted the Landau-Levich problem [L. Landau and B. Levich, "Dragging of a liquid by a moving plate," Acta Physicochim. USSR 17, 42-54 (1942)], involves an interesting blend of capillary and viscous forces plus a matching of the static solution for capillary rise with a numerical solution of the film evolution equation, neglecting gravity, on the downstream region of the flow field. The original solution describes experimental data for a wide range of Capillary numbers but fails to match results for large and very small Capillary numbers. Molecular level forces are introduced to create an augmented version of the film evolution equation to show the effect of van der Waals forces at the lower range of Capillary numbers. A closed form solution for static capillary rise, including molecular forces, was matched with a numerical solution of the augmented film evolution equation in the dynamic meniscus region. Molecular forces do not sensibly modify the static capillary rise region, since film thicknesses are larger than the range of influence of van der Waals forces, but are determinant in shaping the downstream dynamic meniscus of the very thin liquid films. As expected, a quantitatively different level of disjoining pressure for different values of molecular constants remains in the very thin liquid film far downstream. Computational results for a wide range of Capillary numbers and Hamaker constants show a clear transition towards a region where the film thickness becomes independent of the coating speed.

Using satellite telemetry to define spatial population structure in polar bears in the Norwegian and western Russian Arctic

USGS Publications Warehouse

Mauritzen, Mette; Derocher, Andrew E.; Wiig, Øystein; Belikov, Stanislav; Boltunov, Andrei N.; Garner, Gerald W.

2002-01-01

1. Animal populations, defined by geographical areas within a species’ distribution where population dynamics are largely regulated by births and deaths rather than by migration from surrounding areas, may be the correct unit for wildlife management. However, in heterogeneous landscapes varying habitat quality may yield subpopulations with distinct patterns in resource use and demography significant to the dynamics of populations.2. To define the spatial population structure of polar bears Ursus maritimus in the Norwegian and western Russian Arctic, and to assess the existence of a shared population between the two countries, we analysed satellite telemetry data obtained from 105 female polar bears over 12 years.3. Using both cluster analyses and home-range estimation methods, we identified five population units inhabiting areas with different sea-ice characteristics and prey availability.4. The continuous distribution of polar bear positions indicated that the different subpopulations formed one continuous polar bear population in the Norwegian and western Russian Arctic. Hence, Norway and Russia have a shared management responsibility.5. The spatial population structure identified will provide a guide for evaluating geographical patterns in polar bear ecology, the dynamics of polar bear–seal relationships and the effects of habitat alteration due to climate change. The work illustrates the importance of defining population borders and subpopulation structure in understanding the dynamics and management of larger animals.

Volcano infrasonic signals and magma degassing: First-order experimental insights and application to Stromboli

NASA Astrophysics Data System (ADS)

Lane, Stephen J.; James, Mike R.; Corder, Steven B.

2013-09-01

We demonstrate the rise and expansion of a gas slug as a fluid dynamic source mechanism for infrasonic signals generated by gas puffing and impulsive explosions at Stromboli. The fluid dynamics behind the rise, expansion and burst of gas slugs in the confines of an experimental tube can be characterised into different regimes. Passive expansion occurs for small gas masses, where negligible dynamic gas over-pressure develops during bubble ascent and, prior to burst, meniscus oscillation forms an important infrasonic source. With increasing gas mass, a transition regime emerges where dynamic gas over-pressure is significant. For larger gas masses, this regime transforms to fully explosive behaviour, where gas over-pressure dominates as an infrasonic source and bubble bursting is not a critical factor. The rate of change of excess pressure in the experimental tube was used to generate synthetic infrasonic waveforms. Qualitatively, the waveforms compare well to infrasonic waveforms measured from a range of eruptions at Stromboli. Assuming pressure continuity during flow through the vent, and applying dimensionless arguments from the first-order experiments, allows estimation of eruption metrics from infrasonic signals measured at Stromboli. Values of bubble length, gas mass and over-pressure calculated from infrasonic signals are in excellent agreement with those derived by independent means for eruptions at Stromboli, therefore providing a method of estimating eruption metrics from infrasonic measurement.

Visually-induced reorientation illusions as a function of age.

PubMed

Howard, I P; Jenkin, H L; Hu, G

2000-09-01

We reported previously that supine subjects inside a furnished room who are tilted 90 degrees may experience themselves and the room as upright to gravity. We call this the levitation illusion because it creates sensations similar to those experienced in weightlessness. It is an example of a larger class of novel static reorientation illusions that we have explored. Stationary subjects inside a furnished room rotating about a horizontal axis experience complete self rotation about the roll or pitch axis. We call this a dynamic reorientation illusion. We have determined the incidence of static and dynamic reorientation illusions in subjects ranging in age from 9 to 78 yr. Some 90% of subjects of all ages experienced the dynamic reorientation illusion but the percentage of subjects experiencing static reorientation illusions increased with age. We propose that the dynamic illusion depends on a primitive mechanism of visual-vestibular interaction but that static reorientation illusions depend on learned visual cues to the vertical arising from the perceived tops and bottoms of familiar objects and spatial relationships between objects. Older people become more dependent on visual polarity to compensate for loss in vestibular sensitivity. Of 9 astronauts, 4 experienced the levitation illusion. The relationship between susceptibility to reorientation illusions on Earth and in space has still to be determined. We propose that the Space Station will be less disorienting if pictures of familiar objects line the walls.

Gelation of Na-alginate aqueous solution: A study of sodium ion dynamics via NMR relaxometry.

PubMed

Zhao, Congxian; Zhang, Chao; Kang, Hongliang; Xia, Yanzhi; Sui, Kunyan; Liu, Ruigang

2017-08-01

Sodium alginate (SA) hydrogels have a wide range of applications including tissue engineering, drug delivery and formulations for preventing gastric reflux. The dynamics of sodium ions during the gelation process of SA solution is critical for clarification of the gelation procedure. In this work, nuclear magnetic resonance (NMR) relaxometry and pulsed-field-gradient (PFG) NMR diffusometry were used to investigate the dynamics of the sodium ions during the gelation of SA alginate. We find that sodium ions are in two different states with the addition of divalent calcium ions, corresponding to Ca 2+ crosslinked and un-crosslinked regions in the hydrogels. The sodium ions within the un-crosslinked regions are those released from the alginate chains without Ca 2+ crosslinking. The relative content of sodium ions within the Ca 2+ crosslinked regions decreased with the increase in the content of calcium ions in the system. The relaxation time T 2 of sodium ions within the Ca 2+ crosslinked and un-crosslinked regions shift to shorter and longer relaxation time with the increase in concentration of calcium ion, which indicates the closer package of SA chains and the larger space for the diffusion of free sodium ions. This work clarifies the dynamics of 23 Na + in a calcium alginate gel at the equilibrium state. Copyright © 2017 Elsevier Ltd. All rights reserved.

An Adaptive Complex Network Model for Brain Functional Networks

PubMed Central

Gomez Portillo, Ignacio J.; Gleiser, Pablo M.

2009-01-01

Brain functional networks are graph representations of activity in the brain, where the vertices represent anatomical regions and the edges their functional connectivity. These networks present a robust small world topological structure, characterized by highly integrated modules connected sparsely by long range links. Recent studies showed that other topological properties such as the degree distribution and the presence (or absence) of a hierarchical structure are not robust, and show different intriguing behaviors. In order to understand the basic ingredients necessary for the emergence of these complex network structures we present an adaptive complex network model for human brain functional networks. The microscopic units of the model are dynamical nodes that represent active regions of the brain, whose interaction gives rise to complex network structures. The links between the nodes are chosen following an adaptive algorithm that establishes connections between dynamical elements with similar internal states. We show that the model is able to describe topological characteristics of human brain networks obtained from functional magnetic resonance imaging studies. In particular, when the dynamical rules of the model allow for integrated processing over the entire network scale-free non-hierarchical networks with well defined communities emerge. On the other hand, when the dynamical rules restrict the information to a local neighborhood, communities cluster together into larger ones, giving rise to a hierarchical structure, with a truncated power law degree distribution. PMID:19738902

Transitions from trees to cycles in adaptive flow networks

NASA Astrophysics Data System (ADS)

Martens, Erik A.; Klemm, Konstantin

2017-11-01

Transport networks are crucial to the functioning of natural and technological systems. Nature features transport networks that are adaptive over a vast range of parameters, thus providing an impressive level of robustness in supply. Theoretical and experimental studies have found that real-world transport networks exhibit both tree-like motifs and cycles. When the network is subject to load fluctuations, the presence of cyclic motifs may help to reduce flow fluctuations and, thus, render supply in the network more robust. While previous studies considered network topology via optimization principles, here, we take a dynamical systems approach and study a simple model of a flow network with dynamically adapting weights (conductances). We assume a spatially non-uniform distribution of rapidly fluctuating loads in the sinks and investigate what network configurations are dynamically stable. The network converges to a spatially non-uniform stable configuration composed of both cyclic and tree-like structures. Cyclic structures emerge locally in a transcritical bifurcation as the amplitude of the load fluctuations is increased. The resulting adaptive dynamics thus partitions the network into two distinct regions with cyclic and tree-like structures. The location of the boundary between these two regions is determined by the amplitude of the fluctuations. These findings may explain why natural transport networks display cyclic structures in the micro-vascular regions near terminal nodes, but tree-like features in the regions with larger veins.

Disease dynamics and costly punishment can foster socially imposed monogamy.

PubMed

Bauch, Chris T; McElreath, Richard

2016-04-05

Socially imposed monogamy in humans is an evolutionary puzzle because it requires costly punishment by those who impose the norm. Moreover, most societies were--and are--polygynous; yet many larger human societies transitioned from polygyny to socially imposed monogamy beginning with the advent of agriculture and larger residential groups. We use a simulation model to explore how interactions between group size, sexually transmitted infection (STI) dynamics and social norms can explain the timing and emergence of socially imposed monogamy. Polygyny dominates when groups are too small to sustain STIs. However, in larger groups, STIs become endemic (especially in concurrent polygynist networks) and have an impact on fertility, thereby mediating multilevel selection. Punishment of polygynists improves monogamist fitness within groups by reducing their STI exposure, and between groups by enabling punishing monogamist groups to outcompete polygynists. This suggests pathways for the emergence of socially imposed monogamy, and enriches our understanding of costly punishment evolution.

Disease dynamics and costly punishment can foster socially imposed monogamy

PubMed Central

Bauch, Chris T.; McElreath, Richard

2016-01-01

Socially imposed monogamy in humans is an evolutionary puzzle because it requires costly punishment by those who impose the norm. Moreover, most societies were—and are—polygynous; yet many larger human societies transitioned from polygyny to socially imposed monogamy beginning with the advent of agriculture and larger residential groups. We use a simulation model to explore how interactions between group size, sexually transmitted infection (STI) dynamics and social norms can explain the timing and emergence of socially imposed monogamy. Polygyny dominates when groups are too small to sustain STIs. However, in larger groups, STIs become endemic (especially in concurrent polygynist networks) and have an impact on fertility, thereby mediating multilevel selection. Punishment of polygynists improves monogamist fitness within groups by reducing their STI exposure, and between groups by enabling punishing monogamist groups to outcompete polygynists. This suggests pathways for the emergence of socially imposed monogamy, and enriches our understanding of costly punishment evolution. PMID:27044573

Feedbacks Between Shallow Groundwater Dynamics and Surface Topography on Runoff Generation in Flat Fields

NASA Astrophysics Data System (ADS)

Appels, Willemijn M.; Bogaart, Patrick W.; van der Zee, Sjoerd E. A. T. M.

2017-12-01

In winter, saturation excess (SE) ponding is observed regularly in temperate lowland regions. Surface runoff dynamics are controlled by small topographical features that are unaccounted for in hydrological models. To better understand storage and routing effects of small-scale topography and their interaction with shallow groundwater under SE conditions, we developed a model of reduced complexity to investigate SE runoff generation, emphasizing feedbacks between shallow groundwater dynamics and mesotopography. The dynamic specific yield affected unsaturated zone water storage, causing rapid switches between negative and positive head and a flatter groundwater mound than predicted by analytical agrohydrological models. Accordingly, saturated areas were larger and local groundwater fluxes smaller than predicted, leading to surface runoff generation. Mesotopographic features routed water over larger distances, providing a feedback mechanism that amplified changes to the shape of the groundwater mound. This in turn enhanced runoff generation, but whether it also resulted in runoff events depended on the geometry and location of the depressions. Whereas conditions favorable to runoff generation may abound during winter, these feedbacks profoundly reduce the predictability of SE runoff: statistically identical rainfall series may result in completely different runoff generation. The model results indicate that waterlogged areas in any given rainfall event are larger than those predicted by current analytical groundwater models used for drainage design. This change in the groundwater mound extent has implications for crop growth and damage assessments.

What to expect from dynamical modelling of galactic haloes - II. The spherical Jeans equation

NASA Astrophysics Data System (ADS)

Wang, Wenting; Han, Jiaxin; Cole, Shaun; More, Surhud; Frenk, Carlos; Schaller, Matthieu

2018-06-01

The spherical Jeans equation (SJE) is widely used in dynamical modelling of the Milky Way (MW) halo potential. We use haloes and galaxies from the cosmological Millennium-II simulation and hydrodynamical APOSTLE (A Project of Simulations of The Local Environment) simulations to investigate the performance of the SJE in recovering the underlying mass profiles of MW mass haloes. The best-fitting halo mass and concentration parameters scatter by 25 per cent and 40 per cent around their input values, respectively, when dark matter particles are used as tracers. This scatter becomes as large as a factor of 3 when using star particles instead. This is significantly larger than the estimated statistical uncertainty associated with the use of the SJE. The existence of correlated phase-space structures that violate the steady-state assumption of the SJE as well as non-spherical geometries is the principal source of the scatter. Binary haloes show larger scatter because they are more aspherical in shape and have a more perturbed dynamical state. Our results confirm that the number of independent phase-space structures sets an intrinsic limiting precision on dynamical inferences based on the steady-state assumption. Modelling with a radius-independent velocity anisotropy, or using tracers within a limited outer radius, result in significantly larger scatter, but the ensemble-averaged measurement over the whole halo sample is approximately unbiased.

An enhanced flexible dynamic model and experimental verification for a valve train with clearance and multi-directional deformations

NASA Astrophysics Data System (ADS)

Zhou, Changjiang; Hu, Bo; Chen, Siyu; He, Liping

2017-12-01

An enhanced flexible dynamic model for a valve train with clearance and multi-directional deformations is proposed based on finite element method (FEM), and verified by experiment. According to the measured cam profile, the available internal excitations in numerical solution to the model are achieved by using piecewise cubic Hermite interpolating polynomial. The comparative analysis demonstrates that the bending deformation of the rocker arm is much larger than the radial deformation, signifying the necessities of multi-directional deformations in dynamic analysis for the valve train. The effects of valve clearance and cam rotation speed on contact force, acceleration and dynamic transmission error (DTE) are investigated. Both theoretical predictions and experimental measurements show that the amplitudes and fluctuations of contact force, acceleration and DTE become larger, when the valve clearance or cam speed increases. It is found that including the elasticity and the damping will weaken the impact between the rocker arm and the valve on the components (not adjacent to the valve) at either unseating or seating scenario. Additionally, as valve clearance or cam rotation speed becomes larger, the valve lift and the working phase decrease, which eventually leads to inlet air reduction. Furthermore, our study shows that the combustion rate improvement, input torque, and components durability can be improved by tuning valve clearance or adjustment the cam profile.

Time-dependent compressibility of poly (methyl methacrylate) (PMMA) : an experimental and molecular dynamics investigation

NASA Astrophysics Data System (ADS)

Sane, Sandeep Bhalchandra

This thesis contains three chapters, which describe different aspects of an investigation of the bulk response of Poly(Methyl Methacrylate) (PMMA). The first chapter describes the physical measurements by means of a Belcher/McKinney-type apparatus. Used earlier for the measurement of the bulk response of Poly(Vinyl Acetate), it was now adapted for making measurements at higher temperatures commensurate with the glass transition temperature of PMMA. The dynamic bulk compliance of PMMA was measured at atmospheric pressure over a wide range of temperatures and frequencies, from which the master curves for the bulk compliance were generated by means of the time-temperature superposition principle. It was found that the extent of the transition ranges for the bulk and shear response were comparable. Comparison of the shift factors for bulk and shear responses supports the idea that different molecular mechanisms contribute to shear and bulk deformations. The second chapter delineates molecular dynamics computations for the bulk response for a range of pressures and temperatures. The model(s) consisted of 2256 atoms formed into three polymer chains with fifty monomer units per chain per unit cell. The time scales accessed were limited to tens of pico seconds. It was found that, in addition to the typical energy minimization and temperature annealing cycles for establishing equilibrium models, it is advantageous to subject the model samples to a cycle of relatively large pressures (GPa-range) for improving the equilibrium state. On comparing the computations with the experimentally determined "glassy" behavior, one finds that, although the computations were limited to small samples in a physical sense, the primary limitation rests in the very short times (pico seconds). The molecular dynamics computations do not model the physically observed temperature sensitivity of PMMA, even if one employs a hypothetical time-temperature shift to account for the large difference in time scales between experiment and computation. The values computed by the molecular dynamics method do agree with the values measured at the coldest temperature and at the highest frequency of one kiloHertz. The third chapter draws on measurements of uniaxial, shear and Poisson response conducted previously in our laboratory. With the availability of four time or frequency-dependent material functions for the same material, the process of interconversion between different material functions was investigated. Computed material functions were evaluated against the direct experimental measurements and the limitations imposed on successful interconversion due to the experimental errors in the underlying physical data were explored. Differences were observed that are larger than the experimental errors would suggest.

Solvation and Dynamics of Sodium and Potassium in Ethylene Carbonate from ab Initio Molecular Dynamics Simulations

DOE PAGES

Pham, Tuan Anh; Kweon, Kyoung E.; Samanta, Amit; ...

2017-09-18

The development of sodium and potassium batteries offers a promising way to meet the scaling and cost challenges of energy storage. However, compared to Li +, several intrinsic properties of Na + and K +, including their solvation and dynamics in typical organic electrolytes utilized in battery applications, are less well-understood. Here in this paper, we report a systematic investigation of Na + and K + in ethylene carbonate (EC) using first-principles molecular dynamics simulations. Our simulations reveal significant differences in the solvation structure and dynamical properties of Na + and K + compared to Li +. We find that,more » in contrast to Li + which exhibits a well-defined first solvation shell, the larger Na+ and K+ ions show more disordered and flexible solvation structures. These differences in solvation were found to significantly influence the ion dynamics, leading to larger diffusion coefficients of Na + and K + compared to Li +. Our simulations also reveal a clear and interesting analog in the behavior of the ions in EC and aqueous environments, particularly in the specific ion effects on the solvent dynamics. Lastly, this work provides fundamental understanding of the intrinsic properties of Na + and K + in organic electrolytes, which may ultimately influence the intercalation mechanism at the electrode–electrolyte interface and therefore battery performance, lifetime, and safety.« less

8B + 208Pb Elastic Scattering at Coulomb Barrier Energies

NASA Astrophysics Data System (ADS)

La Commara, M.; Mazzocco, M.; Boiano, A.; Boiano, C.; Manea, C.; Parascandolo, C.; Pierroutsakou, D.; Signorini, C.; Strano, E.; Torresi, D.; Yamaguchi, H.; Kahl, D.; Di Meo, P.; Grebosz, J.; Imai, N.; Hirayama, Y.; Ishiyama, H.; Iwasa, N.; Jeong, S. C.; Jia, H. M.; Kim, Y. H.; Kimura, S.; Kubono, S.; Lin, C. J.; Miyatake, H.; Mukai, M.; Nakao, T.; Nicoletto, M.; Sakaguchi, Y.; Sánchez-Benítez, A. M.; Soramel, F.; Teranishi, T.; Wakabayashi, Y.; Watanabe, Y. X.; Yang, L.; Yang, Y. Y.

2018-02-01

The scattering process of weakly-bound nuclei at Coulomb barrier energies provides deep insights on the reaction dynamics induced by exotic nuclei. Within this framework, we measured for the first time the scattering process of the short-lived Radioactive Ion Beam (RIB) 8B (Sp = 0.1375 MeV) from a 208Pb target at 50 MeV beam energy. The 8B RIB was produced by means of the in-flight facility CRIB (RIKEN, Japan) with an average intensity on target of 10 kHz and a purity about 25%. Elastically scattering ions were detected in the angular range θc.m. = 10°-160° by means of the detector array EXPADES. A preliminary optical model analysis indicates a total reaction cross section of about 1 b, a value, once reduced, 2-3 times larger than those obtained for the reactions induced by the stable weakly-bound projectiles 6,7Li on a 208Pb target in the energy range around the Coulomb barrier.

8B + 208Pb Elastic Scattering at Coulomb Barrier Energies

NASA Astrophysics Data System (ADS)

La Commara, M.; Mazzocco, M.; Boiano, A.; Boiano, C.; Manea, C.; Parascandolo, C.; Pierroutsakou, D.; Signorini, C.; Strano, E.; Torresi, D.; Yamaguchi, H.; Kahl, D.; Di Meo, P.; Grebosz, J.; Imai, N.; Hirayama, Y.; Ishiyama, H.; Iwasa, N.; Jeong, S. C.; Jia, H. M.; Kim, Y. H.; Kimura, S.; Kubono, S.; Lin, C. J.; Miyatake, H.; Mukai, M.; Nakao, T.; Nicoletto, M.; Sakaguchi, Y.; Sánchez-Benítez, A. M.; Soramel, F.; Teranishi, T.; Wakabayashi, Y.; Watanabe, Y. X.; Yang, L.; Yang, Y. Y.

2017-11-01

The scattering process of weakly-bound nuclei at Coulomb barrier energies provides deep insights on the reaction dynamics induced by exotic nuclei. Within this framework, we measured for the first time the scattering process of the short-lived Radioactive Ion Beam (RIB) 8B (S p = 0.1375 MeV) from a 208Pb target at 50 MeV beam energy. The 8B RIB was produced by means of the in-flight facility CRIB (RIKEN, Japan) with an average intensity on target of 10 kHz and a purity about 25%. Elastically scattering ions were detected in the angular range θc.m. = 10°-160° by means of the detector array EXPADES. A preliminary optical model analysis indicates a total reaction cross section of about 1 b, a value, once reduced, 2-3 times larger than those obtained for the reactions induced by the stable weakly-bound projectiles 6,7Li on a 208Pb target in the energy range around the Coulomb barrier.

Pair aligning improved motility of Quincke rollers.

PubMed

Lu, Shi Qing; Zhang, Bing Yue; Zhang, Zhi Chao; Shi, Yan; Zhang, Tian Hui

2018-06-06

Density-dependent speed is studied in a two-dimensional active colloid in which the colloidal particles are propelled by an external electric field via a Quincke rotation. Above the critcal electric field, dense dynamic clusters form spotaneously, in which the particles are highly aligned in velocity and move much faster than isolated units. Detailed observations on pair collision reveal that the alignment of velocity is induced by the long-ranged hydrodynamic interactions and the improvement of speed in the clusters arises from pair aligning in which two particles are closely paired and rotate synchronically. In the aligning state, the short-range in-plane dipole-dipole attraction enhances the rotation torque and gives rises to a larger rolling speed. The pair aligning becomes difficult and unstable at high electric field where the normal dipole-dipole repulsion becomes dominant. As a consequence, the dependence of speed on density becomes weak increasingly upon the increase of the electric field. This result offers an interpretation for the discrepancy between our and previous observations on Quincke rollers.

Spatiotemporal chaos in mixed linear-nonlinear two-dimensional coupled logistic map lattice

NASA Astrophysics Data System (ADS)

Zhang, Ying-Qian; He, Yi; Wang, Xing-Yuan

2018-01-01

We investigate a new spatiotemporal dynamics with mixing degrees of nonlinear chaotic maps for spatial coupling connections based on 2DCML. Here, the coupling methods are including with linear neighborhood coupling and the nonlinear chaotic map coupling of lattices, and the former 2DCML system is only a special case in the proposed system. In this paper the criteria such Kolmogorov-Sinai entropy density and universality, bifurcation diagrams, space-amplitude and snapshot pattern diagrams are provided in order to investigate the chaotic behaviors of the proposed system. Furthermore, we also investigate the parameter ranges of the proposed system which holds those features in comparisons with those of the 2DCML system and the MLNCML system. Theoretical analysis and computer simulation indicate that the proposed system contains features such as the higher percentage of lattices in chaotic behaviors for most of parameters, less periodic windows in bifurcation diagrams and the larger range of parameters for chaotic behaviors, which is more suitable for cryptography.

The Complex Relationship between Weather and Dengue Virus Transmission in Thailand

PubMed Central

Campbell, Karen M.; Lin, C. D.; Iamsirithaworn, Sopon; Scott, Thomas W.

2013-01-01

Using a novel analytical approach, weather dynamics and seasonal dengue virus transmission cycles were profiled for each Thailand province, 1983–2001, using monthly assessments of cases, temperature, humidity, and rainfall. We observed systematic differences in the structure of seasonal transmission cycles of different magnitude, the role of weather in regulating seasonal cycles, necessary versus optimal transmission “weather-space,” basis of large epidemics, and predictive indicators that estimate risk. Larger epidemics begin earlier, develop faster, and are predicted at Onset change-point when case counts are low. Temperature defines a viable range for transmission; humidity amplifies the potential within that range. This duality is central to transmission. Eighty percent of 1.2 million severe dengue cases occurred when mean temperature was 27–29.5°C and mean humidity was > 75%. Interventions are most effective when applied early. Most cases occur near Peak, yet small reductions at Onset can substantially reduce epidemic magnitude. Monitoring the Quiet-Phase is fundamental in effectively targeting interventions pre-emptively. PMID:23958906

Overview of the Meso-NH model version 5.4 and its applications

NASA Astrophysics Data System (ADS)

Lac, Christine; Chaboureau, Jean-Pierre; Masson, Valéry; Pinty, Jean-Pierre; Tulet, Pierre; Escobar, Juan; Leriche, Maud; Barthe, Christelle; Aouizerats, Benjamin; Augros, Clotilde; Aumond, Pierre; Auguste, Franck; Bechtold, Peter; Berthet, Sarah; Bielli, Soline; Bosseur, Frédéric; Caumont, Olivier; Cohard, Jean-Martial; Colin, Jeanne; Couvreux, Fleur; Cuxart, Joan; Delautier, Gaëlle; Dauhut, Thibaut; Ducrocq, Véronique; Filippi, Jean-Baptiste; Gazen, Didier; Geoffroy, Olivier; Gheusi, François; Honnert, Rachel; Lafore, Jean-Philippe; Lebeaupin Brossier, Cindy; Libois, Quentin; Lunet, Thibaut; Mari, Céline; Maric, Tomislav; Mascart, Patrick; Mogé, Maxime; Molinié, Gilles; Nuissier, Olivier; Pantillon, Florian; Peyrillé, Philippe; Pergaud, Julien; Perraud, Emilie; Pianezze, Joris; Redelsperger, Jean-Luc; Ricard, Didier; Richard, Evelyne; Riette, Sébastien; Rodier, Quentin; Schoetter, Robert; Seyfried, Léo; Stein, Joël; Suhre, Karsten; Taufour, Marie; Thouron, Odile; Turner, Sandra; Verrelle, Antoine; Vié, Benoît; Visentin, Florian; Vionnet, Vincent; Wautelet, Philippe

2018-05-01

This paper presents the Meso-NH model version 5.4. Meso-NH is an atmospheric non hydrostatic research model that is applied to a broad range of resolutions, from synoptic to turbulent scales, and is designed for studies of physics and chemistry. It is a limited-area model employing advanced numerical techniques, including monotonic advection schemes for scalar transport and fourth-order centered or odd-order WENO advection schemes for momentum. The model includes state-of-the-art physics parameterization schemes that are important to represent convective-scale phenomena and turbulent eddies, as well as flows at larger scales. In addition, Meso-NH has been expanded to provide capabilities for a range of Earth system prediction applications such as chemistry and aerosols, electricity and lightning, hydrology, wildland fires, volcanic eruptions, and cyclones with ocean coupling. Here, we present the main innovations to the dynamics and physics of the code since the pioneer paper of Lafore et al. (1998) and provide an overview of recent applications and couplings.

Effect of fuel and nozzle geometry on the off-axis oscillation of needle in diesel injectors using high-speed X-ray phase contrast imaging

NASA Astrophysics Data System (ADS)

Zhang, X.; Liu, J.; Wang, J.

2016-05-01

The diesel spray characteristics are strongly influenced by the flow dynamics inside the injector nozzle. Moreover, the off-axis oscillation of needle could lead to variation of orifice flow in the nozzle. In this paper, the needle oscillation was investigated using high-speed X-ray phase contrast imaging and quantitative image processing. The effects of fuel, injection pressure and nozzle geometry on the needle oscillation were analyzed. The results showed that the vertical and horizontal oscillation of needle was independent on the injection pressure. The maximum oscillation range of 14μ m was found. Biodiesel application slightly decreased the needle oscillation due to high viscosity. The needle oscillation range increased generally with increasing hole number. The larger needle oscillation in multi-hole injectors was dominated by the geometry problem or production issue at lower needle lift. In addition, the influence of needle oscillation on the spray morphology was also discussed.

Optimizing the Performance of Reactive Molecular Dynamics Simulations for Multi-core Architectures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aktulga, Hasan Metin; Coffman, Paul; Shan, Tzu-Ray

2015-12-01

Hybrid parallelism allows high performance computing applications to better leverage the increasing on-node parallelism of modern supercomputers. In this paper, we present a hybrid parallel implementation of the widely used LAMMPS/ReaxC package, where the construction of bonded and nonbonded lists and evaluation of complex ReaxFF interactions are implemented efficiently using OpenMP parallelism. Additionally, the performance of the QEq charge equilibration scheme is examined and a dual-solver is implemented. We present the performance of the resulting ReaxC-OMP package on a state-of-the-art multi-core architecture Mira, an IBM BlueGene/Q supercomputer. For system sizes ranging from 32 thousand to 16.6 million particles, speedups inmore » the range of 1.5-4.5x are observed using the new ReaxC-OMP software. Sustained performance improvements have been observed for up to 262,144 cores (1,048,576 processes) of Mira with a weak scaling efficiency of 91.5% in larger simulations containing 16.6 million particles.« less

The complex relationship between weather and dengue virus transmission in Thailand.

PubMed

Campbell, Karen M; Lin, C D; Iamsirithaworn, Sopon; Scott, Thomas W

2013-12-01

Using a novel analytical approach, weather dynamics and seasonal dengue virus transmission cycles were profiled for each Thailand province, 1983-2001, using monthly assessments of cases, temperature, humidity, and rainfall. We observed systematic differences in the structure of seasonal transmission cycles of different magnitude, the role of weather in regulating seasonal cycles, necessary versus optimal transmission "weather-space," basis of large epidemics, and predictive indicators that estimate risk. Larger epidemics begin earlier, develop faster, and are predicted at Onset change-point when case counts are low. Temperature defines a viable range for transmission; humidity amplifies the potential within that range. This duality is central to transmission. Eighty percent of 1.2 million severe dengue cases occurred when mean temperature was 27-29.5°C and mean humidity was > 75%. Interventions are most effective when applied early. Most cases occur near Peak, yet small reductions at Onset can substantially reduce epidemic magnitude. Monitoring the Quiet-Phase is fundamental in effectively targeting interventions pre-emptively.

Density-Dependent Regulation of Brook Trout Population Dynamics along a Core-Periphery Distribution Gradient in a Central Appalachian Watershed

PubMed Central

Huntsman, Brock M.; Petty, J. Todd

2014-01-01

Spatial population models predict strong density-dependence and relatively stable population dynamics near the core of a species' distribution with increasing variance and importance of density-independent processes operating towards the population periphery. Using a 10-year data set and an information-theoretic approach, we tested a series of candidate models considering density-dependent and density-independent controls on brook trout population dynamics across a core-periphery distribution gradient within a central Appalachian watershed. We sampled seven sub-populations with study sites ranging in drainage area from 1.3–60 km2 and long-term average densities ranging from 0.335–0.006 trout/m. Modeled response variables included per capita population growth rate of young-of-the-year, adult, and total brook trout. We also quantified a stock-recruitment relationship for the headwater population and coefficients of variability in mean trout density for all sub-populations over time. Density-dependent regulation was prevalent throughout the study area regardless of stream size. However, density-independent temperature models carried substantial weight and likely reflect the effect of year-to-year variability in water temperature on trout dispersal between cold tributaries and warm main stems. Estimated adult carrying capacities decreased exponentially with increasing stream size from 0.24 trout/m in headwaters to 0.005 trout/m in the main stem. Finally, temporal variance in brook trout population size was lowest in the high-density headwater population, tended to peak in mid-sized streams and declined slightly in the largest streams with the lowest densities. Our results provide support for the hypothesis that local density-dependent processes have a strong control on brook trout dynamics across the entire distribution gradient. However, the mechanisms of regulation likely shift from competition for limited food and space in headwater streams to competition for thermal refugia in larger main stems. It also is likely that source-sink dynamics and dispersal from small headwater habitats may partially influence brook trout population dynamics in the main stem. PMID:24618602

Investigating Uncertainty in Predicting Carbon Dynamics in North American Biomes: Putting Support-Effect Bias in Perspective

NASA Technical Reports Server (NTRS)

Dungan, Jennifer L.; Brass, Jim (Technical Monitor)

2001-01-01

A fundamental strategy in NASA's Earth Observing System's (EOS) monitoring of vegetation and its contribution to the global carbon cycle is to rely on deterministic, process-based ecosystem models to make predictions of carbon flux over large regions. These models are parameterized (that is, the input variables are derived) using remotely sensed images such as those from the Moderate Resolution Imaging Spectroradiometer (MODIS), ground measurements and interpolated maps. Since early applications of these models, investigators have noted that results depend partly on the spatial support of the input variables. In general, the larger the support of the input data, the greater the chance that the effects of important components of the ecosystem will be averaged out. A review of previous work shows that using large supports can cause either positive or negative bias in carbon flux predictions. To put the magnitude and direction of these biases in perspective, we must quantify the range of uncertainty on our best measurements of carbon-related variables made on equivalent areas. In other words, support-effect bias should be placed in the context of prediction uncertainty from other sources. If the range of uncertainty at the smallest support is less than the support-effect bias, more research emphasis should probably be placed on support sizes that are intermediate between those of field measurements and MODIS. If the uncertainty range at the smallest support is larger than the support-effect bias, the accuracy of MODIS-based predictions will be difficult to quantify and more emphasis should be placed on field-scale characterization and sampling. This talk will describe methods to address these issues using a field measurement campaign in North America and "upscaling" using geostatistical estimation and simulation.

Diversification and the evolution of dispersal ability in the tribe Brassiceae (Brassicaceae).

PubMed

Willis, C G; Hall, J C; Rubio de Casas, R; Wang, T Y; Donohue, K

2014-12-01

Dispersal and establishment ability can influence evolutionary processes such as geographic isolation, adaptive divergence and extinction probability. Through these population-level dynamics, dispersal ability may also influence macro-evolutionary processes such as species distributions and diversification. This study examined patterns of evolution of dispersal-related fruit traits, and how the evolution of these traits is correlated with shifts in geographic range size, habitat and diversification rates in the tribe Brassiceae (Brassicaceae). The phylogenetic analysis included 72 taxa sampled from across the Brassiceae and included both nuclear and chloroplast markers. Dispersal-related fruit characters were scored and climate information for each taxon was retrieved from a database. Correlations between fruit traits, seed characters, habitat, range and climate were determined, together with trait-dependent diversification rates. It was found that the evolution of traits associated with limited dispersal evolved only in association with compensatory traits that increase dispersal ability. The evolution of increased dispersal ability occurred in multiple ways through the correlated evolution of different combinations of fruit traits. The evolution of traits that increase dispersal ability was in turn associated with larger seed size, increased geographic range size and higher diversification rates. This study provides evidence that the evolution of increased dispersal ability and larger seed size, which may increase establishment ability, can also influence macro-evolutionary processes, possibly by increasing the propensity for long-distance dispersal. In particular, it may increase speciation and consequent diversification rates by increasing the likelihood of geographic and thereby reproductive isolation. © The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Optimal configurations of spatial scale for grid cell firing under noise and uncertainty

PubMed Central

Towse, Benjamin W.; Barry, Caswell; Bush, Daniel; Burgess, Neil

2014-01-01

We examined the accuracy with which the location of an agent moving within an environment could be decoded from the simulated firing of systems of grid cells. Grid cells were modelled with Poisson spiking dynamics and organized into multiple ‘modules’ of cells, with firing patterns of similar spatial scale within modules and a wide range of spatial scales across modules. The number of grid cells per module, the spatial scaling factor between modules and the size of the environment were varied. Errors in decoded location can take two forms: small errors of precision and larger errors resulting from ambiguity in decoding periodic firing patterns. With enough cells per module (e.g. eight modules of 100 cells each) grid systems are highly robust to ambiguity errors, even over ranges much larger than the largest grid scale (e.g. over a 500 m range when the maximum grid scale is 264 cm). Results did not depend strongly on the precise organization of scales across modules (geometric, co-prime or random). However, independent spatial noise across modules, which would occur if modules receive independent spatial inputs and might increase with spatial uncertainty, dramatically degrades the performance of the grid system. This effect of spatial uncertainty can be mitigated by uniform expansion of grid scales. Thus, in the realistic regimes simulated here, the optimal overall scale for a grid system represents a trade-off between minimizing spatial uncertainty (requiring large scales) and maximizing precision (requiring small scales). Within this view, the temporary expansion of grid scales observed in novel environments may be an optimal response to increased spatial uncertainty induced by the unfamiliarity of the available spatial cues. PMID:24366144

Effects of Instantaneous Multiband Dynamic Compression on Speech Intelligibility

NASA Astrophysics Data System (ADS)

Herzke, Tobias; Hohmann, Volker

2005-12-01

The recruitment phenomenon, that is, the reduced dynamic range between threshold and uncomfortable level, is attributed to the loss of instantaneous dynamic compression on the basilar membrane. Despite this, hearing aids commonly use slow-acting dynamic compression for its compensation, because this was found to be the most successful strategy in terms of speech quality and intelligibility rehabilitation. Former attempts to use fast-acting compression gave ambiguous results, raising the question as to whether auditory-based recruitment compensation by instantaneous compression is in principle applicable in hearing aids. This study thus investigates instantaneous multiband dynamic compression based on an auditory filterbank. Instantaneous envelope compression is performed in each frequency band of a gammatone filterbank, which provides a combination of time and frequency resolution comparable to the normal healthy cochlea. The gain characteristics used for dynamic compression are deduced from categorical loudness scaling. In speech intelligibility tests, the instantaneous dynamic compression scheme was compared against a linear amplification scheme, which used the same filterbank for frequency analysis, but employed constant gain factors that restored the sound level for medium perceived loudness in each frequency band. In subjective comparisons, five of nine subjects preferred the linear amplification scheme and would not accept the instantaneous dynamic compression in hearing aids. Four of nine subjects did not perceive any quality differences. A sentence intelligibility test in noise (Oldenburg sentence test) showed little to no negative effects of the instantaneous dynamic compression, compared to linear amplification. A word intelligibility test in quiet (one-syllable rhyme test) showed that the subjects benefit from the larger amplification at low levels provided by instantaneous dynamic compression. Further analysis showed that the increase in intelligibility resulting from a gain provided by instantaneous compression is as high as from a gain provided by linear amplification. No negative effects of the distortions introduced by the instantaneous compression scheme in terms of speech recognition are observed.

Monitoring of ionospheric turbulence spatial features by SEE diagnostic tools

NASA Astrophysics Data System (ADS)

Sergeev, E. N.; Boiko, G. N.; Shvarts, M. M.; Grach, S. M.; Kotov, P. V.

Spatial features of HF pumped ionospheric F-region are investigated experimentally at the SURA facility by means of the stimulated electromagnetic emission (SEE). SEE, recall, appears as a result of conversion (or scattering) of HF pump-driven plasma waves off the geomagnetic field aligned electron density irregularities (striations). A specially designed pumping scheme was elaborated to study an influence of the perturbations of the electron density and temperature, created by powerful pump wave at frequency f_h and occupying quite extended altitude range (range-I), on spectral and temporal evolution of the diagnostic SEE (DSEE) generated by a weak continuous or pulse diagnostic wave at a frequency f_d in an altitude range-II, spatially shifted from the centre of the range-I. New two-channel digital receiver allowed to analyze the SEE from both ranges (around both frequencies f_h and f_d) simultaneously. A combination of the SEE diagnostics and computer simulations allowed to study:% (a) dependences of striation spectrum and dynamics on the frequency shift |f_h-f_d| (which can be easily translated to the altitude displacement), powers of the pump and diagnostic waves, offsets of the frequencies f_h and f_d from electron gyroharmonics, and on the daily conditions. It is found that a slow (time scale of 1--10 s) dynamics of DSEE, namely, characteristics of its slow overshoot and undershoot effects are determined by the spectral shape and intensity of the striations at, respectively, the development and relaxation stages. It is shown that the striation spectrum flattens in meter scale range for f_h between 3th and 4th gyroharmonics in comparison with larger f_h, in the centre of the range-I in comparison with its periphery, that the range-I extension increases with its altitude and with a transition from day to night conditions;% (b) an influence of the powerful pumping on ``diagnostic'' HF plasma wave evolution by measurements of growth and decay times of the DSEE. It is found that a shape and fast (time scale of 1--10 ms) dynamics of the DSEE spectrum is determined by efficiency of interaction between different HF modes (determined, particularly, by f_d offset from a gyroharmonic), but not by striation characteristics. Besides, during the powerful pumping the DSEE decay rates always exceed the collision values observed for purely diagnostic schedule at nighttime conditions.% The work was supported by INTAS grant 03-515583, RFBR grants 04-02-17544 and 03-02-16309, grant E02-3.2-36 of Education Ministry of Russian Federation.

Correlation effects in focused transmission through disordered media (Conference Presentation)

NASA Astrophysics Data System (ADS)

Hsu, Chia Wei; Liew, Seng Fatt; Goetschy, Arthur; Cao, Hui; Stone, A. Douglas

2017-02-01

By controlling the many degrees of freedom in the incident wavefront, one can manipulate wave propagation in complex structures. Such wavefront-shaping methods have been used extensively for controlling light transmitted into wavelength-scale regions (speckles), a property that is insensitive to correlations in the speckle pattern. Extending coherent control to larger regions is of great interest both scientifically and for applications such as optical communications, photothermal therapy, and the imaging of large objects within or behind a diffusive medium. However, waves diffusing through a disordered medium are known to exhibit non-local intensity correlations, and their effect on coherent control has not been fully understood. Here, we demonstrate the effects of correlations with wavefront-shaping experiments on a scattering sample of zinc oxide microparticles. Long-range correlations substantially increase the dynamic range of coherent control over light transmitted onto larger target regions, far beyond what would be achievable if correlations were negligible. This and other effects of correlations emerge when the number of speckles targeted, M2, exceeds the dimensionless conductance g. Using a filtered random matrix ensemble appropriate for describing coherent diffusion and the lateral spreading in an open geometry, we show analytically that M2/g appears as the controlling parameter in universal scaling laws for several statistical properties of interest--predictions that we quantitatively confirm with experimental data. Our work elucidates the roles of speckle correlations and provides a general theoretical framework for modeling open systems in wavefront-shaping experiments.

SU-F-T-307: Peripheral Dose Comparison Between Static and Dynamic Jaw Tracking On a High Definition MLC System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perez-Andujar, A; Cheung, J; Chuang, C

Purpose: To investigate the effect of dynamic and static jaw tracking on patient peripheral doses. Materials and Methods: A patient plan with a large sacral metastasis (volume 800cm3, prescription 600cGyx5) was selected for this study. The plan was created using 2-field RapidArc with jaw tracking enabled (Eclipse, V11.0.31). These fields were then exported and edited in MATLAB with static jaw positions using the control point with the largest field size for each respective arc, but preserving the optimized leaf sequences for delivery. These fields were imported back into Eclipse for dose calculation and comparison and copied to a Rando phantommore » for delivery analysis. Points were chosen in the phantom at depth and on the phantom surface at locations outside the primary radiation field, at distances of 12cm, 20cm, and 30cm from the isocenter. Measurements were acquired with OSLDs placed at these positions in the phantom with both the dynamic and static jaw deliveries for comparison. Surface measurements included an additional 1cm bolus over the OSLDs to ensure electron equilibrium. Results: The static jaw deliveries resulted in cumulative jaw-defined field sizes of 17.3% and 17.4% greater area than the dynamic jaw deliveries for each arc. The static jaw plan resulted in very small differences in calculated dose in the treatment planning system ranging from 0–16cGy. The measured dose differences were larger than calculated, but the differences in absolute dose were small. The measured dose differences at depth (surface) between the two deliveries showed an increase for the static jaw delivery of 2.2%(11.4%), 15.6%(20.0%), and 12.7%(12.7%) for distances of 12cm, 20cm, and 30cm, respectively. Eclipse calculates a difference of 0–3.1% for all of these points. The largest absolute dose difference between all points was 6.2cGy. Conclusion: While we demonstrated larger than expected differences in peripheral dose, the absolute dose differences were small.« less

A simple model to estimate plantarflexor muscle-tendon mechanics and energetics during walking with elastic ankle exoskeletons

PubMed Central

Sawicki, Gregory S.; Khan, Nabil S.

2016-01-01

Goal A recent experiment demonstrated that when humans wear unpowered elastic ankle exoskeletons with intermediate spring stiffness they can reduce their metabolic energy cost to walk by ~7%. Springs that are too compliant or too stiff have little benefit. The purpose of this study was to use modeling and simulation to explore the muscle-level mechanisms for the ‘sweet-spot’ in stiffness during exoskeleton assisted walking. Methods We developed a simple lumped, uniarticular musculoskeletal model of the plantarflexors operating in parallel with an elastic ‘exo-tendon’. Using an inverse approach with constrained kinematics and kinetics, we rapidly simulated human walking over a range of exoskeleton stiffness values and examined the underlying neuromechanics and energetics of the biological plantarflexors. Results Stiffer ankle exoskeleton springs resulted in larger decreases in plantarflexor muscle forces, activations and metabolic energy consumption. However, in the process of unloading the compliant biological muscle-tendon unit (MTU), the muscle fascicles (CE) experienced larger excursions that negatively impacted series elastic element (SEE) recoil that is characteristic of a tuned ‘catapult mechanism’. Conclusion The combination of disrupted muscle-tendon dynamics and the need to produce compensatory forces/moments to maintain overall net ankle moment invariance could explain the ‘sweet spot’ in metabolic performance at intermediate ankle exoskeleton stiffness. Future work will aim to provide experimental evidence to support the model predictions presented here using ultrasound imaging of muscle-level dynamics during walking with elastic ankle exoskeletons. Significance Engineers must account for the muscle-level effects of exoskeleton designs in order to achieve maximal performance objectives. PMID:26485350

The Universe at Moderate Redshift

NASA Technical Reports Server (NTRS)

Cen, Renyue; Ostriker, Jeremiah P.

1997-01-01

The report covers the work done in the past year and a wide range of fields including properties of clusters of galaxies; topological properties of galaxy distributions in terms of galaxy types; patterns of gravitational nonlinear clustering process; development of a ray tracing algorithm to study the gravitational lensing phenomenon by galaxies, clusters and large-scale structure, one of whose applications being the effects of weak gravitational lensing by large-scale structure on the determination of q(0); the origin of magnetic fields on the galactic and cluster scales; the topological properties of Ly(alpha) clouds the Ly(alpha) optical depth distribution; clustering properties of Ly(alpha) clouds; and a determination (lower bound) of Omega(b) based on the observed Ly(alpha) forest flux distribution. In the coming year, we plan to continue the investigation of Ly(alpha) clouds using larger dynamic range (about a factor of two) and better simulations (with more input physics included) than what we have now. We will study the properties of galaxies on 1 - 100h(sup -1) Mpc scales using our state-of-the-art large scale galaxy formation simulations of various cosmological models, which will have a resolution about a factor of 5 (in each dimension) better than our current, best simulations. We will plan to study the properties of X-ray clusters using unprecedented, very high dynamic range (20,000) simulations which will enable us to resolve the cores of clusters while keeping the simulation volume sufficiently large to ensure a statistically fair sample of the objects of interest. The details of the last year's works are now described.

The Effective Dynamic Ranges for Glaucomatous Visual Field Progression With Standard Automated Perimetry and Stimulus Sizes III and V

PubMed Central

Zamba, Gideon K. D.; Artes, Paul H.

2018-01-01

Purpose It has been shown that threshold estimates below approximately 20 dB have little effect on the ability to detect visual field progression in glaucoma. We aimed to compare stimulus size V to stimulus size III, in areas of visual damage, to confirm these findings by using (1) a different dataset, (2) different techniques of progression analysis, and (3) an analysis to evaluate the effect of censoring on mean deviation (MD). Methods In the Iowa Variability in Perimetry Study, 120 glaucoma subjects were tested every 6 months for 4 years with size III SITA Standard and size V Full Threshold. Progression was determined with three complementary techniques: pointwise linear regression (PLR), permutation of PLR, and linear regression of the MD index. All analyses were repeated on “censored'' datasets in which threshold estimates below a given criterion value were set to equal the criterion value. Results Our analyses confirmed previous observations that threshold estimates below 20 dB contribute much less to visual field progression than estimates above this range. These findings were broadly similar with stimulus sizes III and V. Conclusions Censoring of threshold values < 20 dB has relatively little impact on the rates of visual field progression in patients with mild to moderate glaucoma. Size V, which has lower retest variability, performs at least as well as size III for longitudinal glaucoma progression analysis and appears to have a larger useful dynamic range owing to the upper sensitivity limit being higher. PMID:29356822

Electrical Characterization of 3D Au Microelectrodes for Use in Retinal Prostheses.

PubMed

Lee, Sangmin; Ahn, Jae Hyun; Seo, Jong-Mo; Chung, Hum; Cho, Dong-Il Dan

2015-06-17

In order to provide high-quality visual information to patients who have implanted retinal prosthetic devices, the number of microelectrodes should be large. As the number of microelectrodes is increased, the dimensions of each microelectrode must be decreased, which in turn results in an increased microelectrode interface impedance and decreased injection current dynamic range. In order to improve the trade-off envelope between the number of microelectrodes and the current injection characteristics, a 3D microelectrode structure can be used as an alternative. In this paper, the electrical characteristics of 2D and 3D Au microelectrodes were investigated. In order to examine the effects of the structural difference, 2D and 3D Au microelectrodes with different base areas but similar effective surface areas were fabricated and evaluated. Interface impedances were measured and similar dynamic ranges were obtained for both 2D and 3D Au microelectrodes. These results indicate that more electrodes can be implemented in the same area if 3D designs are used. Furthermore, the 3D Au microelectrodes showed substantially enhanced electrical durability characteristics against over-injected stimulation currents, withstanding electrical currents that are much larger than the limit measured for 2D microelectrodes of similar area. This enhanced electrical durability property of 3D Au microelectrodes is a new finding in microelectrode research, and makes 3D microelectrodes very desirable devices.

Integration of Weather Avoidance and Traffic Separation

NASA Technical Reports Server (NTRS)

Consiglio, Maria C.; Chamberlain, James P.; Wilson, Sara R.

2011-01-01

This paper describes a dynamic convective weather avoidance concept that compensates for weather motion uncertainties; the integration of this weather avoidance concept into a prototype 4-D trajectory-based Airborne Separation Assurance System (ASAS) application; and test results from a batch (non-piloted) simulation of the integrated application with high traffic densities and a dynamic convective weather model. The weather model can simulate a number of pseudo-random hazardous weather patterns, such as slow- or fast-moving cells and opening or closing weather gaps, and also allows for modeling of onboard weather radar limitations in range and azimuth. The weather avoidance concept employs nested "core" and "avoid" polygons around convective weather cells, and the simulations assess the effectiveness of various avoid polygon sizes in the presence of different weather patterns, using traffic scenarios representing approximately two times the current traffic density in en-route airspace. Results from the simulation experiment show that the weather avoidance concept is effective over a wide range of weather patterns and cell speeds. Avoid polygons that are only 2-3 miles larger than their core polygons are sufficient to account for weather uncertainties in almost all cases, and traffic separation performance does not appear to degrade with the addition of weather polygon avoidance. Additional "lessons learned" from the batch simulation study are discussed in the paper, along with insights for improving the weather avoidance concept. Introduction

A crossover trial comparing wide dynamic range compression and frequency compression in hearing aids for tinnitus therapy.

PubMed

Hodgson, Shirley-Anne; Herdering, Regina; Singh Shekhawat, Giriraj; Searchfield, Grant D

2017-01-01

It has been suggested that frequency lowering may be a superior tinnitus reducing digital signal processing (DSP) strategy in hearing aids than conventional amplification. A crossover trial was undertaken to determine if frequency compression (FC) was superior to wide dynamic range compression (WDRC) in reducing tinnitus. A 6-8-week crossover trial of two digital signal-processing techniques (WDRC and 2 WDRC with FC) was undertaken in 16 persons with high-frequency sensorineural hearing loss and chronic tinnitus. WDRC resulted in larger improvements in Tinnitus Functional Index and rating scale scores than WDRC with FC. The tinnitus improvements obtained with both processing types appear to be due to reduced hearing handicap and possibly decreased tinnitus audibility. Hearing aids are useful assistive devices in the rehabilitation of tinnitus. FC was very successful in a few individuals but was not superior to WDRC across the sample. It is recommended that WDRC remain as the default first choice tinnitus hearing aid processing strategy for tinnitus. FC should be considered as one of the many other options for selection based on individual hearing needs. Implications of Rehabilitation Hearing aids can significantly reduce the effects of tinnitus after 6-8 weeks of use. Addition of frequency compression digital signal processing does not appear superior to standard amplitude compression alone. Improvements in tinnitus were correlated with reductions in hearing handicap.

Rotational reorientation dynamics of Aerosol-OT reverse micelles formed in near-critical propane

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heitz, M.P.; Bright, F.V.

1996-06-01

The rotational reorientation kinetics of two fluorescent solutes (rhodamine 6G, R6G, and rhodamine 101, R101) have been determined in sodium bis(2-ethylhexyl) sulfosuccinate (Aerosol-OT, AOT) reverse micelles formed in liquid and near-critical propane. We show that the amount of water loading ([water]/[AOT], R), continuous phase density, and temperature all influence the solute rotational dynamics. In all cases, the decay of anisotropy data (i.e., frequency-dependent differential polarized phase angle and polarized modulation ratio) are well described by a bi-exponential decay law. We find that the faster rotational correlation times are similar to but slightly less than the values predicted for an individualmore » AOT reverse micelle rotating in propane. The recovered rotational correlation times range from 200 to 500 ps depending on experimental conditions. This faster rotational process is explained in terms of lateral diffusion of the fluorophore along the water/headgroup interfacial region within the reverse micelle. The recovered values for the slower rotational correlation times range from 7 to 18 ns. These larger rotational reorientation times are assigned to varying micelle-micelle (i.e., tail-tail) interactions in the low-density, highly compressible fluid region. We also quantify the contribution of the reverse micellar {open_quotes}aggregate{close_quotes} to the total decay of anisotropy. {copyright} {ital 1996} {ital Society for Applied Spectroscopy}« less

Electric field determination in the plasma-antenna boundary of a lower-hybrid wave launcher in Tore Supra through dynamic Stark-effect spectroscopy

DOE PAGES

Martin, Elijah H.; Goniche, M.; Klepper, C. Christopher; ...

2015-04-22

Interaction of radio-frequency (RF) waves with the plasma in the near-field of a high-power wave launcher is now seen to be important, both in understanding the channeling of these waves through the plasma boundary and in avoiding power losses in the edge. In a recent Letter a direct non-intrusive measurement of a near antenna RF electric field in the range of lower hybrid (LH) frequencies (more » $$E_{LH}$$) was announced (Phys. Rev. Lett., 110:215005, 2013). The measurement was achieved through the fitting of Balmer series deuterium spectral lines utilizing a time dependent (dynamic) Stark effect model. In this article, the processing of the spectral data is discussed in detail and applied to a larger range of measurements and the accuracy and limitations of the experimental technique is investigated. We find through an analysis of numerous Tore Supra pulses that good quantitative agreement exists between the measured and full-wave modeled $$E_{LH}$$ when the launched power exceeds 0.5MW. For low power the measurement becomes formidable utilizing the implemented passive spectroscopic technique because the spectral noise overwhelms the effect of the RF electric field on the line profile. Additionally, effects of the ponderomotive force are suspected at sufficiently high power.« less

Ecological allometries and niche use dynamics across Komodo dragon ontogeny.

PubMed

Purwandana, Deni; Ariefiandy, Achmad; Imansyah, M Jeri; Seno, Aganto; Ciofi, Claudio; Letnic, Mike; Jessop, Tim S

2016-04-01

Ontogenetic allometries in ecological habits and niche use are key responses by which individuals maximize lifetime fitness. Moreover, such allometries have significant implications for how individuals influence population and community dynamics. Here, we examined how body size variation in Komodo dragons (Varanus komodoensis) influenced ecological allometries in their: (1) prey size preference, (2) daily movement rates, (3) home range area, and (4) subsequent niche use across ontogeny. With increased body mass, Komodo dragons increased prey size with a dramatic switch from small (≤10 kg) to large prey (≥50 kg) in lizards heavier than 20 kg. Rates of foraging movement were described by a non-linear concave down response with lizard increasing hourly movement rates up until ∼20 kg body mass before decreasing daily movement suggesting reduced foraging effort in larger lizards. In contrast, home range area exhibited a sigmoid response with increased body mass. Intrapopulation ecological niche use and overlap were also strongly structured by body size. Thus, ontogenetic allometries suggest Komodo dragon's transition from a highly active foraging mode exploiting small prey through to a less active sit and wait feeding strategy focused on killing large ungulates. Further, our results suggest that as body size increases across ontogeny, the Komodo dragon exhibited marked ontogenetic niche shifts that enabled it to function as an entire vertebrate predator guild by exploiting prey across multiple trophic levels.

Evidence for the Magnetic Breakout Model in an Equatorial Coronal-Hole Jet

NASA Technical Reports Server (NTRS)

Kumar, Pankaj; Karpen, Judith T.; Antiochos, Spiro K.; Wyper, Peter F.; Devore, C. Richard; DeForest, Craig E.

2018-01-01

Small, impulsive jets commonly occur throughout the solar corona, but are especially visible in coronal holes. Evidence is mounting that jets are part of a continuum of eruptions that extends to much larger coronal mass ejections and eruptive flares. Because coronal-hole jets originate in relatively simple magnetic structures, they offer an ideal testbed for theories of energy buildup and release in the full range of solar eruptions. We analyzed an equatorial coronal-hole jet observed by the Solar Dynamics Observatory (SDO)/AIA (Atmospheric Imaging Assembly)) on 2014 January 9 in which the magnetic-field structure was consistent with the embedded-bipole topology that we identified and modeled previously as an origin of coronal jets. In addition, this event contained a mini-filament, which led to important insights into the energy storage and release mechanisms. SDO/HMI (Solar Dynamics Observatory/Helioseismic and Magnetic Imager) magnetograms revealed footpoint motions in the primary minority-polarity region at the eruption site, but show negligible flux emergence or cancellation for at least 16 hours before the eruption. Therefore, the free energy powering this jet probably came from magnetic shear concentrated at the polarity inversion line within the embedded bipole. We find that the observed activity sequence and its interpretation closely match the predictions of the breakout jet model, strongly supporting the hypothesis that the breakout model can explain solar eruptions on a wide range of scales.

Ecological allometries and niche use dynamics across Komodo dragon ontogeny

NASA Astrophysics Data System (ADS)

Purwandana, Deni; Ariefiandy, Achmad; Imansyah, M. Jeri; Seno, Aganto; Ciofi, Claudio; Letnic, Mike; Jessop, Tim S.

2016-04-01

Ontogenetic allometries in ecological habits and niche use are key responses by which individuals maximize lifetime fitness. Moreover, such allometries have significant implications for how individuals influence population and community dynamics. Here, we examined how body size variation in Komodo dragons ( Varanus komodoensis) influenced ecological allometries in their: (1) prey size preference, (2) daily movement rates, (3) home range area, and (4) subsequent niche use across ontogeny. With increased body mass, Komodo dragons increased prey size with a dramatic switch from small (≤10 kg) to large prey (≥50 kg) in lizards heavier than 20 kg. Rates of foraging movement were described by a non-linear concave down response with lizard increasing hourly movement rates up until ˜20 kg body mass before decreasing daily movement suggesting reduced foraging effort in larger lizards. In contrast, home range area exhibited a sigmoid response with increased body mass. Intrapopulation ecological niche use and overlap were also strongly structured by body size. Thus, ontogenetic allometries suggest Komodo dragon's transition from a highly active foraging mode exploiting small prey through to a less active sit and wait feeding strategy focused on killing large ungulates. Further, our results suggest that as body size increases across ontogeny, the Komodo dragon exhibited marked ontogenetic niche shifts that enabled it to function as an entire vertebrate predator guild by exploiting prey across multiple trophic levels.

Biomass, production and woody detritus in an old coast redwood (Sequoia sempervirens) forest

USGS Publications Warehouse

Busing, R.T.; Fujimori, T.

2005-01-01

We examined aboveground biomass dynamics, aboveground net primary production (ANPP), and woody detritus input in an old Sequoia sempervirens stand over a three-decade period. Our estimates of aboveground biomass ranged from 3300 to 5800 Mg ha-1. Stem biomass estimates ranged from 3000 to 5200 Mg ha-1. Stem biomass declined 7% over the study interval. Biomass dynamics were patchy, with marked declines in recent tree-fall patches <0.05 ha in size. Larger tree-fall patches approaching 0.2 ha in size were observed outside the study plot. Our estimates of ANPP ranged from 6 to 14 Mg ha -1yr-1. Estimates of 7 to 10 Mg ha-1yr -1 were considered to be relatively accurate. Thus, our estimates based on long-term data corroborated the findings of earlier short-term studies. ANPP of old, pure stands of Sequoia was not above average for temperate forests. Even though production was potentially high on a per stem basis, it was moderate at the stand level. We obtained values of 797 m3 ha -1 and 262 Mg ha-1 for coarse woody detritus volume and mass, respectively. Fine woody detritus volume and mass were estimated at 16 m3 ha-1 and 5 Mg ha-1, respectively. Standing dead trees (or snags) comprised 7% of the total coarse detritus volume and 8% of the total mass. Coarse detritus input averaged 5.7 to 6.9 Mg ha -1yr-1. Assuming steady-state input and pool of coarse detritus, we obtained a decay rate constant of 0.022 to 0.026. The old-growth stand of Sequoia studied had extremely high biomass, but ANPP was moderate and the amount of woody detritus was not exceptionally large. Biomass accretion and loss were not rapid in this stand partly because of the slow population dynamics and low canopy turnover rate of Sequoia at the old-growth stage. Nomenclature: Hickman (1993). ?? Springer 2005.

Differences of muscle co-contraction of the ankle joint between young and elderly adults during dynamic postural control at different speeds.

PubMed

Iwamoto, Yoshitaka; Takahashi, Makoto; Shinkoda, Koichi

2017-08-02

Agonist and antagonist muscle co-contractions during motor tasks are greater in the elderly than in young adults. During normal walking, muscle co-contraction increases with gait speed in young adults, but not in elderly adults. However, no study has compared the effects of speed on muscle co-contraction of the ankle joint during dynamic postural control in young and elderly adults. We compared muscle co-contractions of the ankle joint between young and elderly subjects during a functional stability boundary test at different speeds. Fifteen young adults and 16 community-dwelling elderly adults participated in this study. The task was functional stability boundary tests at different speeds (preferred and fast). Electromyographic evaluations of the tibialis anterior and soleus were recorded. The muscle co-contraction was evaluated using the co-contraction index (CI). There were no statistically significant differences in the postural sway parameters between the two age groups. Elderly subjects showed larger CI in both speed conditions than did the young subjects. CI was higher in the fast speed condition than in the preferred speed condition in the young subjects, but there was no difference in the elderly subjects. Moreover, after dividing the analytical range into phases (acceleration and deceleration phases), the CI was larger in the deceleration phase than in the acceleration phase in both groups, except for the young subjects in the fast speed conditions. Our results showed a greater muscle co-contraction of the ankle joint during dynamic postural control in elderly subjects than in young subjects not only in the preferred speed condition but also in the fast speed condition. In addition, the young subjects showed increased muscle co-contraction in the fast speed condition compared with that in the preferred speed condition; however, the elderly subjects showed no significant difference in muscle co-contraction between the two speed conditions. This indicates that fast movements cause different influences on dynamic postural control in elderly people, particularly from the point of view of muscle activation. These findings highlight the differences in the speed effects on muscle co-contraction of the ankle joint during dynamic postural control between the two age groups.

Nonadiabatic Dynamics in Single-Electron Tunneling Devices with Time-Dependent Density-Functional Theory

NASA Astrophysics Data System (ADS)

Dittmann, Niklas; Splettstoesser, Janine; Helbig, Nicole

2018-04-01

We simulate the dynamics of a single-electron source, modeled as a quantum dot with on-site Coulomb interaction and tunnel coupling to an adjacent lead in time-dependent density-functional theory. Based on this system, we develop a time-nonlocal exchange-correlation potential by exploiting analogies with quantum-transport theory. The time nonlocality manifests itself in a dynamical potential step. We explicitly link the time evolution of the dynamical step to physical relaxation timescales of the electron dynamics. Finally, we discuss prospects for simulations of larger mesoscopic systems.

Nonadiabatic Dynamics in Single-Electron Tunneling Devices with Time-Dependent Density-Functional Theory.

PubMed

Dittmann, Niklas; Splettstoesser, Janine; Helbig, Nicole

2018-04-13

We simulate the dynamics of a single-electron source, modeled as a quantum dot with on-site Coulomb interaction and tunnel coupling to an adjacent lead in time-dependent density-functional theory. Based on this system, we develop a time-nonlocal exchange-correlation potential by exploiting analogies with quantum-transport theory. The time nonlocality manifests itself in a dynamical potential step. We explicitly link the time evolution of the dynamical step to physical relaxation timescales of the electron dynamics. Finally, we discuss prospects for simulations of larger mesoscopic systems.

The “unreasonable effectiveness” of stratigraphic and geomorphic experiments

NASA Astrophysics Data System (ADS)

Paola, Chris; Straub, Kyle; Mohrig, David; Reinhardt, Liam

2009-12-01

The growth of quantitative analysis and prediction in Earth-surface science has been accompanied by growth in experimental stratigraphy and geomorphology. Experimenters have grown increasingly bold in targeting landscape elements from channel reaches up to the entire erosional networks and depositional basins, often using very small facilities. The experiments produce spatial structure and kinematics that, although imperfect, compare well with natural systems despite differences of spatial scale, time scale, material properties, and number of active processes. Experiments have been particularly useful in studying a wide range of forms of self-organized (autogenic) complexity that occur in morphodynamic systems. Autogenic dynamics creates much of the spatial structure we see in the landscape and in preserved strata, and is strongly associated with sediment storage and release. The observed consistency between experimental and field systems despite large differences in governing dimensionless numbers is what we mean by "unreasonable effectiveness". We suggest that unreasonable experimental effectiveness arises from natural scale independence. We generalize existing ideas to relate internal similarity, in which a small part of a system is similar to the larger system, to external similarity, in which a small copy of a system is similar to the larger system. We propose that internal similarity implies external similarity, though not the converse. The external similarity of landscape experiments to natural landscapes suggests that natural scale independence may be even more characteristic of morphodynamics than it is of better studied cases such as turbulence. We urge a shift in emphasis in experimental stratigraphy and geomorphology away from classical dynamical scaling and towards a quantitative understanding of the origins and limits of scale independence. Other research areas with strong growth potential in experimental surface dynamics include physical-biotic interactions, cohesive effects, stochastic processes, the interplay of structural and geomorphic self-organization, extraction of quantitative process information from landscape and stratigraphic records, and closer interaction between experimentation and theory.

Dynamics of mononuclear phagocyte system Fc receptor function in systemic lupus erythematosus. Relation to disease activity and circulating immune complexes.

PubMed Central

Kimberly, R P; Parris, T M; Inman, R D; McDougal, J S

1983-01-01

Seventeen pairs of longitudinal studies of mononuclear phagocyte system (MPS) Fc receptor function in 15 patients with systemic lupus were performed to explore the dynamic range of Fc receptor dysfunction in lupus and to establish the relationships between MPS function, clinical disease activity and circulating immune complexes (CIC). Fc receptor function was measured by the clearance of IgG sensitized autologous erythrocytes. At the time of first study the degree of MPS dysfunction was correlated with both clinical activity (P less than 0.05) and CIC (P less than 0.05). At follow-up patients with a change in clinical status show significantly larger changes in clearance function compared to clinically stable patients (206 min vs 7 min; P less than 0.001). MPS function changed concordantly with a change in clinical status in all cases (P = 0.002). Longitudinal assessments did not demonstrate concordance of changes in MPS function and CIC, measured by three different assays. The MPS Fc receptor defect in systemic lupus is dynamic and closely associated with disease activity. The lack of concordance of the defect with changes in CIC suggests that either CIC does not adequately reflect receptor site saturation or that other factors may also contribute to the magnitude of MPS dysfunction. PMID:6839542

Hydrogeomorphic connectivity on roads crossing in rural headwaters and its effect on stream dynamics.

PubMed

Thomaz, Edivaldo L; Peretto, Gustavo T

2016-04-15

Unpaved roads are ubiquitous features that have been transforming the landscape through human history. Unpaved roads affect the water and sediment pathways through a catchment and impacts the aquatic ecosystem. In this study, we describe the effect of unpaved road on the hydrogeomorphic connectivity at the rural headwater scale. Measurement was based on the stream crossing approach, i.e., road superimposing the drainage system. We installed a Parshall flume coupled with single-stage suspended sediment sampler at each stream crossing. In addition, we displayed our monitoring scheme with an upscaling perspective from second-order to third-order stream. We concluded that the road-stream coupling dramatically changed the stream dynamic. The increase of discharge caused by roads at the headwater was 50% larger compared to unaffected streams. Additionally, suspended sediment concentration enhancement at stream crossings ranged from to 413% at second-order streams to 145% at third-order streams. The landform characteristics associated with the road network produced an important hydrogeomorphic disruption in the landscape. As a result, the sediment filter function of the riparian zone was reduced dramatically. Therefore, we recommend that projects for aquatic system restoration or conservation in rural landscape consider the role of the road network on stream dynamics. Copyright © 2016 Elsevier B.V. All rights reserved.

Prediction of the Reference Evapotranspiration Using a Chaotic Approach

PubMed Central

Wang, Wei-guang; Zou, Shan; Luo, Zhao-hui; Zhang, Wei; Kong, Jun

2014-01-01

Evapotranspiration is one of the most important hydrological variables in the context of water resources management. An attempt was made to understand and predict the dynamics of reference evapotranspiration from a nonlinear dynamical perspective in this study. The reference evapotranspiration data was calculated using the FAO Penman-Monteith equation with the observed daily meteorological data for the period 1966–2005 at four meteorological stations (i.e., Baotou, Zhangbei, Kaifeng, and Shaoguan) representing a wide range of climatic conditions of China. The correlation dimension method was employed to investigate the chaotic behavior of the reference evapotranspiration series. The existence of chaos in the reference evapotranspiration series at the four different locations was proved by the finite and low correlation dimension. A local approximation approach was employed to forecast the daily reference evapotranspiration series. Low root mean square error (RSME) and mean absolute error (MAE) (for all locations lower than 0.31 and 0.24, resp.), high correlation coefficient (CC), and modified coefficient of efficiency (for all locations larger than 0.97 and 0.8, resp.) indicate that the predicted reference evapotranspiration agrees well with the observed one. The encouraging results indicate the suitableness of chaotic approach for understanding and predicting the dynamics of the reference evapotranspiration. PMID:25133221

Small-size mass spectrometer for determining gases and volatile compounds in air during breathing

NASA Astrophysics Data System (ADS)

Kogan, V. T.; Kozlenok, A. V.; Chichagov, Yu. V.; Antonov, A. S.; Lebedev, D. S.; Bogdanov, A. A.; Moroshkin, V. S.; Berezina, A. V.; Viktorova-Leclerc, O. S.; Vlasov, S. A.; Tubol'tsev, Yu. V.

2015-10-01

We describe an automated mass spectrometer for diagnostics of deceases from the composition of exhaled air. It includes a capillary system, which performs a rapid direct feeding of the sample to the instrument without changing substantially its composition and serves for studying the dynamics of variation of the ratio between various components of exhaled air. The membrane system for introducing the sample is intended for determining low concentrations of volatile organic compounds which are biomarkers of pathologies. It is characterized by selective transmittance and ensures the detection limits of target compounds at the parts per million-parts per billion (ppm-ppb) level. A static mass analyzer operating on permanent magnets possesses advantages important for mobile devices as compared to its dynamic analogs: it is more reliable in operation, has a larger dynamic range, and can be used for determining the concentration of components in the mixture one-by-one or simultaneously. The curvilinear output boundary of the magnetic lens of the mass analyzer makes it possible to reduce its weight and size by 2.5 times without deteriorating the mass resolution. We report on the results of testing of the instrument and consider the possibility of its application for early detection of deceases of respiratory and blood circulation system, gastrointestinal tract, and endocrine system.

Organizational and Spatial Dynamics of Attentional Focusing in Hierarchically Structured Objects

ERIC Educational Resources Information Center

Yeari, Menahem; Goldsmith, Morris

2011-01-01

Is the focusing of visual attention object-based, space-based, both, or neither? Attentional focusing latencies in hierarchically structured compound-letter objects were examined, orthogonally manipulating global size (larger vs. smaller) and organizational complexity (two-level structure vs. three-level structure). In a dynamic focusing task,…

Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.

PubMed

Bengtsson, Henrik; Jönsson, Göran; Vallon-Christersson, Johan

2004-11-12

Non-linearities in observed log-ratios of gene expressions, also known as intensity dependent log-ratios, can often be accounted for by global biases in the two channels being compared. Any step in a microarray process may introduce such offsets and in this article we study the biases introduced by the microarray scanner and the image analysis software. By scanning the same spotted oligonucleotide microarray at different photomultiplier tube (PMT) gains, we have identified a channel-specific bias present in two-channel microarray data. For the scanners analyzed it was in the range of 15-25 (out of 65,535). The observed bias was very stable between subsequent scans of the same array although the PMT gain was greatly adjusted. This indicates that the bias does not originate from a step preceding the scanner detector parts. The bias varies slightly between arrays. When comparing estimates based on data from the same array, but from different scanners, we have found that different scanners introduce different amounts of bias. So do various image analysis methods. We propose a scanning protocol and a constrained affine model that allows us to identify and estimate the bias in each channel. Backward transformation removes the bias and brings the channels to the same scale. The result is that systematic effects such as intensity dependent log-ratios are removed, but also that signal densities become much more similar. The average scan, which has a larger dynamical range and greater signal-to-noise ratio than individual scans, can then be obtained. The study shows that microarray scanners may introduce a significant bias in each channel. Such biases have to be calibrated for, otherwise systematic effects such as intensity dependent log-ratios will be observed. The proposed scanning protocol and calibration method is simple to use and is useful for evaluating scanner biases or for obtaining calibrated measurements with extended dynamical range and better precision. The cross-platform R package aroma, which implements all described methods, is available for free from http://www.maths.lth.se/bioinformatics/.

Development of a multistage compliant mechanism with new boundary constraint

NASA Astrophysics Data System (ADS)

Ling, Mingxiang; Cao, Junyi; Jiang, Zhou; Li, Qisheng

2018-01-01

This paper presents a piezo-actuated compliant mechanism with a new boundary constraint to provide concurrent large workspace and high dynamic frequency for precision positioning or other flexible manipulation applications. A two-stage rhombus-type displacement amplifier with the "sliding-sliding" boundary constraint is presented to maximize the dynamic frequency while retaining a large output displacement. The vibration mode is also improved by the designed boundary constraint. A theoretical kinematic model of the compliant mechanism is established to optimize the geometric parameters, and a prototype is fabricated with a compact dimension of 60 mm × 60 mm × 12 mm. The experimental testing shows that the maximum stroke is approximately 0.6 mm and the output stiffness is 1.1 N/μm with the fundamental frequency of larger than 2.2 kHz. Lastly, the excellent performance of the presented compliant mechanism is compared with several mechanisms in the previous literature. As a conclusion, the presented boundary constraint strategy provides a new way to balance the trade-off between the frequency response and the stroke range widely existed in compliant mechanisms.

Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression

PubMed Central

Andergassen, Daniel; Dotter, Christoph P; Wenzel, Daniel; Sigl, Verena; Bammer, Philipp C; Muckenhuber, Markus; Mayer, Daniela; Kulinski, Tomasz M; Theussl, Hans-Christian; Penninger, Josef M; Bock, Christoph; Barlow, Denise P; Pauler, Florian M; Hudson, Quanah J

2017-01-01

To determine the dynamics of allelic-specific expression during mouse development, we analyzed RNA-seq data from 23 F1 tissues from different developmental stages, including 19 female tissues allowing X chromosome inactivation (XCI) escapers to also be detected. We demonstrate that allelic expression arising from genetic or epigenetic differences is highly tissue-specific. We find that tissue-specific strain-biased gene expression may be regulated by tissue-specific enhancers or by post-transcriptional differences in stability between the alleles. We also find that escape from X-inactivation is tissue-specific, with leg muscle showing an unexpectedly high rate of XCI escapers. By surveying a range of tissues during development, and performing extensive validation, we are able to provide a high confidence list of mouse imprinted genes including 18 novel genes. This shows that cluster size varies dynamically during development and can be substantially larger than previously thought, with the Igf2r cluster extending over 10 Mb in placenta. DOI: http://dx.doi.org/10.7554/eLife.25125.001 PMID:28806168

The recent breakup of an asteroid in the main-belt region.

PubMed

Nesvorný, David; Bottke, William F; Dones, Luke; Levison, Harold F

2002-06-13

The present population of asteroids in the main belt is largely the result of many past collisions. Ideally, the asteroid fragments resulting from each impact event could help us understand the large-scale collisions that shaped the planets during early epochs. Most known asteroid fragment families, however, are very old and have therefore undergone significant collisional and dynamical evolution since their formation. This evolution has masked the properties of the original collisions. Here we report the discovery of a family of asteroids that formed in a disruption event only 5.8 +/- 0.2 million years ago, and which has subsequently undergone little dynamical and collisional evolution. We identified 39 fragments, two of which are large and comparable in size (diameters of approximately 19 and approximately 14 km), with the remainder exhibiting a continuum of sizes in the range 2-7 km. The low measured ejection velocities suggest that gravitational re-accumulation after a collision may be a common feature of asteroid evolution. Moreover, these data can be used to check numerical models of larger-scale collisions.

Multiscale Characterization of Bacterial Swarming Illuminates Principles Governing Directed Surface Motility

NASA Astrophysics Data System (ADS)

Strickland, Ben; Hoeger, Kentaro; Ursell, Tristan

In many systems, individual characteristics interact, leading to the spontaneous emergence of order and complexity. In biological settings like microbes, such collective behaviors can imbue a variety of benefits to constituent individuals, including increased spatial range, improved access to nutrients, and enhanced resistance to antibiotic threats. To untangle the biophysical underpinnings of collective motility, we use passive tracers and a curated genetic library of Bacillus subtilis, including motile, non-motile, biofilm-deficient, and non-chemotactic mutants. We characterize and connect individual behavior on the microscopic scale to macroscopic colony morphology and motility of dendritic swarming. We analyze the persistence and dynamics of coordinated movement on length scales up to 4 orders of magnitude larger than that of individual cells, revealing rapid and directed responses of microbial groups to external stimuli, such as avoidance dynamics across chemical gradients. Our observations uncover the biophysical interplay between individual motility, surface wetness, phenotypic diversity, and external physical forces that robustly precipitate coordinated group behavior in microbes, and suggest general principles that govern the transition from individual to group behavior.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Durazo, R.; Hernandez, X.; Sánchez, S. F.

For any MONDian extended theory of gravity where the rotation curves of spiral galaxies are explained through a change in physics rather than the hypothesis of dark matter, a generic dynamical behavior is expected for pressure supported systems: an outer flattening of the velocity dispersion profile occurring at a characteristic radius, where both the amplitude of this flat velocity dispersion and the radius at which it appears are predicted to show distinct scalings with the total mass of the system. By carefully analyzing the dynamics of globular clusters and elliptical galaxies, we are able to significantly extend the astronomical diversitymore » of objects in which MONDian gravity has been tested, from spiral galaxies to the much larger mass range covered by pressure supported systems. We show that a universal projected velocity dispersion profile accurately describes various classes of pressure supported systems, and further, that the expectations of extended gravity are met across seven orders of magnitude in mass. These observed scalings are not expected under dark matter cosmology, and would require particular explanations tuned at the scales of each distinct astrophysical system.« less

Three-dimensional Finite Element Formulation and Scalable Domain Decomposition for High Fidelity Rotor Dynamic Analysis

NASA Technical Reports Server (NTRS)

Datta, Anubhav; Johnson, Wayne R.

2009-01-01

This paper has two objectives. The first objective is to formulate a 3-dimensional Finite Element Model for the dynamic analysis of helicopter rotor blades. The second objective is to implement and analyze a dual-primal iterative substructuring based Krylov solver, that is parallel and scalable, for the solution of the 3-D FEM analysis. The numerical and parallel scalability of the solver is studied using two prototype problems - one for ideal hover (symmetric) and one for a transient forward flight (non-symmetric) - both carried out on up to 48 processors. In both hover and forward flight conditions, a perfect linear speed-up is observed, for a given problem size, up to the point of substructure optimality. Substructure optimality and the linear parallel speed-up range are both shown to depend on the problem size as well as on the selection of the coarse problem. With a larger problem size, linear speed-up is restored up to the new substructure optimality. The solver also scales with problem size - even though this conclusion is premature given the small prototype grids considered in this study.

Viscoacoustic model for near-field ultrasonic levitation.

PubMed

Melikhov, Ivan; Chivilikhin, Sergey; Amosov, Alexey; Jeanson, Romain

2016-11-01

Ultrasonic near-field levitation allows for contactless support and transportation of an object over vibrating surface. We developed an accurate model predicting pressure distribution in the gap between the surface and levitating object. The formulation covers a wide range of the air flow regimes: from viscous squeezed flow dominating in small gap to acoustic wave propagation in larger gap. The paper explains derivation of the governing equations from the basic fluid dynamics. The nonreflective boundary conditions were developed to properly define air flow at the outlet. Comparing to direct computational fluid dynamics modeling our approach allows achieving good accuracy while keeping the computation cost low. Using the model we studied the levitation force as a function of gap distance. It was shown that there are three distinguished flow regimes: purely viscous, viscoacoustic, and acoustic. The regimes are defined by the balance of viscous and inertial forces. In the viscous regime the pressure in the gap is close to uniform while in the intermediate viscoacoustic and the acoustic regimes the pressure profile is wavy. The model was validated by a dedicated levitation experiment and compared to similar published results.

Viscoacoustic model for near-field ultrasonic levitation

NASA Astrophysics Data System (ADS)

Melikhov, Ivan; Chivilikhin, Sergey; Amosov, Alexey; Jeanson, Romain

2016-11-01

Ultrasonic near-field levitation allows for contactless support and transportation of an object over vibrating surface. We developed an accurate model predicting pressure distribution in the gap between the surface and levitating object. The formulation covers a wide range of the air flow regimes: from viscous squeezed flow dominating in small gap to acoustic wave propagation in larger gap. The paper explains derivation of the governing equations from the basic fluid dynamics. The nonreflective boundary conditions were developed to properly define air flow at the outlet. Comparing to direct computational fluid dynamics modeling our approach allows achieving good accuracy while keeping the computation cost low. Using the model we studied the levitation force as a function of gap distance. It was shown that there are three distinguished flow regimes: purely viscous, viscoacoustic, and acoustic. The regimes are defined by the balance of viscous and inertial forces. In the viscous regime the pressure in the gap is close to uniform while in the intermediate viscoacoustic and the acoustic regimes the pressure profile is wavy. The model was validated by a dedicated levitation experiment and compared to similar published results.

Understanding the heavy-tailed dynamics in human behavior

NASA Astrophysics Data System (ADS)

Ross, Gordon J.; Jones, Tim

2015-06-01

The recent availability of electronic data sets containing large volumes of communication data has made it possible to study human behavior on a larger scale than ever before. From this, it has been discovered that across a diverse range of data sets, the interevent times between consecutive communication events obey heavy-tailed power law dynamics. Explaining this has proved controversial, and two distinct hypotheses have emerged. The first holds that these power laws are fundamental, and arise from the mechanisms such as priority queuing that humans use to schedule tasks. The second holds that they are statistical artifacts which only occur in aggregated data when features such as circadian rhythms and burstiness are ignored. We use a large social media data set to test these hypotheses, and find that although models that incorporate circadian rhythms and burstiness do explain part of the observed heavy tails, there is residual unexplained heavy-tail behavior which suggests a more fundamental cause. Based on this, we develop a quantitative model of human behavior which improves on existing approaches and gives insight into the mechanisms underlying human interactions.

Mesoscopic modeling of DNA denaturation rates: Sequence dependence and experimental comparison

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dahlen, Oda, E-mail: oda.dahlen@ntnu.no; Erp, Titus S. van, E-mail: titus.van.erp@ntnu.no

Using rare event simulation techniques, we calculated DNA denaturation rate constants for a range of sequences and temperatures for the Peyrard-Bishop-Dauxois (PBD) model with two different parameter sets. We studied a larger variety of sequences compared to previous studies that only consider DNA homopolymers and DNA sequences containing an equal amount of weak AT- and strong GC-base pairs. Our results show that, contrary to previous findings, an even distribution of the strong GC-base pairs does not always result in the fastest possible denaturation. In addition, we applied an adaptation of the PBD model to study hairpin denaturation for which experimentalmore » data are available. This is the first quantitative study in which dynamical results from the mesoscopic PBD model have been compared with experiments. Our results show that present parameterized models, although giving good results regarding thermodynamic properties, overestimate denaturation rates by orders of magnitude. We believe that our dynamical approach is, therefore, an important tool for verifying DNA models and for developing next generation models that have higher predictive power than present ones.« less

Beam dynamics and electromagnetic studies of a 3 MeV, 325 MHz radio frequency quadrupole accelerator

NASA Astrophysics Data System (ADS)

Gaur, Rahul; Kumar, Vinit

2018-05-01

We present the beam dynamics and electromagnetic studies of a 3 MeV, 325 MHz H- radio frequency quadrupole (RFQ) accelerator for the proposed Indian Spallation Neutron Source project. We have followed a design approach, where the emittance growth and the losses are minimized by keeping the tune depression ratio larger than 0.5. The transverse cross-section of RFQ is designed at a frequency lower than the operating frequency, so that the tuners have their nominal position inside the RFQ cavity. This has resulted in an improvement of the tuning range, and the efficiency of tuners to correct the field errors in the RFQ. The vane-tip modulations have been modelled in CST-MWS code, and its effect on the field flatness and the resonant frequency has been studied. The deterioration in the field flatness due to vane-tip modulations is reduced to an acceptable level with the help of tuners. Details of the error study and the higher order mode study along with mode stabilization technique are also described in the paper.

Strategies for Characterization of Low-Abundant Intact or Truncated Low-Molecular-Weight Proteins From Human Plasma.

PubMed

Cai, Tanxi; Yang, Fuquan

2017-01-01

Low-molecular-weight region (LMW, MW≤30kDa) of human serum/plasma proteins, including small intact proteins, truncated fragments of larger proteins, along with some other small components, has been associated with the ongoing physiological and pathological events, and thereby represent a treasure trove of diagnostic molecules. Great progress in the mining of novel biomarkers from this diagnostic treasure trove for disease diagnosis and health monitoring has been achieved based on serum samples from healthy individuals and patients and powerful new approaches in biochemistry and systems biology. However, cumulative evidence indicates that many potential LMW protein biomarkers might still have escaped from detection due to their low abundance, the dynamic complexity of serum/plasma, and the limited efficiency of characterization approaches. Here, we provide an overview of the current state of knowledge with respect to strategies for the characterization of low-abundant LMW proteins (small intact or truncated proteins) from human serum/plasma, involving prefractionation or enrichment methods to reduce dynamic range and mass spectrometry-based characterization of low-abundant LMW proteins. © 2017 Elsevier Inc. All rights reserved.

The development and evaluation of a novel repurposing of a peripheral gaming device for the acquisition of forces applied to a hydraulic treatment plinth.

PubMed

Cooper, Darren; Bevins, Joe; Corbett, Mark

2018-01-13

This technical note details the stages taken to create an instrumented hydraulic treatment plinth for the measurement of applied forces in the vertical axis. The modification used a widely available low-cost peripheral gaming device and required only basic construction and computer skills. The instrumented treatment plinth was validated against a laboratory grade force platform across a range of applied masses from 0.5-15 kg, mock Gr I-IV vertebral mobilisations and a dynamic response test. Intraclass correlation coefficients demonstrated poor reliability (0.46) for low masses of 0.5 kg improving to excellent for larger masses up to15 kg respectively; excellent to good reliability (0.97-0.86) for the mock mobilisations and moderate reliability (0.51) for the dynamic response test. The study demonstrates how a cheap peripheral gaming device can be repurposed so that forces applied to a hydraulic treatment plinth can be collected reliably when applied in a clinically reasoned manner. Copyright © 2018 Elsevier Ltd. All rights reserved.

A case for bone canaliculi as the anatomical site of strain generated potentials

NASA Technical Reports Server (NTRS)

Cowin, S. C.; Weinbaum, S.; Zeng, Y.

1995-01-01

We address the question of determining the anatomical site that is the source of the experimentally observed strain generated potentials (SGPs) in bone tissue. There are two candidates for the anatomical site that is the SGP source, the collagen-hydroxyapatite porosity and the larger size lacunar-canalicular porosity. In the past it has been argued, on the basis of experimental data and a reasonable model, that the site of the SGPs in bone is the collagen-hydroxyapatite porosity. The theoretically predicted pore radius necessary for the SGPs to reside in this porosity is 16 nm, which is somewhat larger than the pore radii estimated from gas adsorption data where the preponderance of the pores were estimated to be in the range 5-12.5 nm. However, this pore size is significantly larger than the 2 nm size of the small tracer, microperoxidase, which appears to be excluded from the mineralized matrix. In this work a similar model, but one in which the effects of fluid dynamic drag of the cell surface matrix in the bone canaliculi are included, is used to show that it is possible for the generation of SGPs to be associated with the larger size lacunar-canalicular porosity when the hydraulic drag and electrokinetic contribution of the bone fluid passage through the cell coat (glycocalyx) is considered. The consistency of the SGP data with this model is demonstrated. A general boundary condition is introduced to allow for current leakage at the bone surface. The results suggest that the current leakage is small for the in vitro studies in which the strain generated potentials have been measured.

High dynamic range image acquisition based on multiplex cameras

NASA Astrophysics Data System (ADS)

Zeng, Hairui; Sun, Huayan; Zhang, Tinghua

2018-03-01

High dynamic image is an important technology of photoelectric information acquisition, providing higher dynamic range and more image details, and it can better reflect the real environment, light and color information. Currently, the method of high dynamic range image synthesis based on different exposure image sequences cannot adapt to the dynamic scene. It fails to overcome the effects of moving targets, resulting in the phenomenon of ghost. Therefore, a new high dynamic range image acquisition method based on multiplex cameras system was proposed. Firstly, different exposure images sequences were captured with the camera array, using the method of derivative optical flow based on color gradient to get the deviation between images, and aligned the images. Then, the high dynamic range image fusion weighting function was established by combination of inverse camera response function and deviation between images, and was applied to generated a high dynamic range image. The experiments show that the proposed method can effectively obtain high dynamic images in dynamic scene, and achieves good results.

Some Dynamical Effects of the Cosmological Constant

NASA Astrophysics Data System (ADS)

Axenides, M.; Floratos, E. G.; Perivolaropoulos, L.

Newton's law gets modified in the presence of a cosmological constant by a small repulsive term (antigravity) that is proportional to the distance. Assuming a value of the cosmological constant consistent with the recent SnIa data (Λ~=10-52 m-2), we investigate the significance of this term on various astrophysical scales. We find that on galactic scales or smaller (less than a few tens of kpc), the dynamical effects of the vacuum energy are negligible by several orders of magnitude. On scales of 1 Mpc or larger however we find that the vacuum energy can significantly affect the dynamics. For example we show that the velocity data in the local group of galaxies correspond to galactic masses increased by 35% in the presence of vacuum energy. The effect is even more important on larger low density systems like clusters of galaxies or superclusters.

Correlated lateral phase separations in stacks of lipid membranes

NASA Astrophysics Data System (ADS)

Hoshino, Takuma; Komura, Shigeyuki; Andelman, David

2015-12-01

Motivated by the experimental study of Tayebi et al. [Nat. Mater. 11, 1074 (2012)] on phase separation of stacked multi-component lipid bilayers, we propose a model composed of stacked two-dimensional Ising spins. We study both its static and dynamical features using Monte Carlo simulations with Kawasaki spin exchange dynamics that conserves the order parameter. We show that at thermodynamical equilibrium, due to strong inter-layer correlations, the system forms a continuous columnar structure for any finite interaction across adjacent layers. Furthermore, the phase separation shows a faster dynamics as the inter-layer interaction is increased. This temporal behavior is mainly due to an effective deeper temperature quench because of the larger value of the critical temperature, Tc, for larger inter-layer interaction. When the temperature ratio, T/Tc, is kept fixed, the temporal growth exponent does not increase and even slightly decreases as a function of the increased inter-layer interaction.

Accelerating Time Integration for the Shallow Water Equations on the Sphere Using GPUs

DOE PAGES

Archibald, R.; Evans, K. J.; Salinger, A.

2015-06-01

The push towards larger and larger computational platforms has made it possible for climate simulations to resolve climate dynamics across multiple spatial and temporal scales. This direction in climate simulation has created a strong need to develop scalable timestepping methods capable of accelerating throughput on high performance computing. This study details the recent advances in the implementation of implicit time stepping of the spectral element dynamical core within the United States Department of Energy (DOE) Accelerated Climate Model for Energy (ACME) on graphical processing units (GPU) based machines. We demonstrate how solvers in the Trilinos project are interfaced with ACMEmore » and GPU kernels to increase computational speed of the residual calculations in the implicit time stepping method for the atmosphere dynamics. We demonstrate the optimization gains and data structure reorganization that facilitates the performance improvements.« less

Breakdown of Bose-Einstein distribution in photonic crystals.

PubMed

Lo, Ping-Yuan; Xiong, Heng-Na; Zhang, Wei-Min

2015-03-30

In the last two decades, considerable advances have been made in the investigation of nano-photonics in photonic crystals. Previous theoretical investigations of photon dynamics were carried out at zero temperature. Here, we investigate micro/nano cavity photonics in photonic crystals at finite temperature. Due to photonic-band-gap-induced localized long-lived photon dynamics, we discover that cavity photons in photonic crystals do not obey Bose-Einstein statistical distribution. Within the photonic band gap and in the vicinity of the band edge, cavity photons combine the long-lived non-Markovain dynamics with thermal fluctuations together to form photon states that memorize the initial cavity state information. As a result, Bose-Einstein distribution is completely broken down in these regimes, even if the thermal energy is larger or much larger than the cavity detuning energy. In this investigation, a crossover phenomenon from equilibrium to nonequilibrium steady states is also revealed.

Breakdown of Bose-Einstein Distribution in Photonic Crystals

PubMed Central

Lo, Ping-Yuan; Xiong, Heng-Na; Zhang, Wei-Min

2015-01-01

In the last two decades, considerable advances have been made in the investigation of nano-photonics in photonic crystals. Previous theoretical investigations of photon dynamics were carried out at zero temperature. Here, we investigate micro/nano cavity photonics in photonic crystals at finite temperature. Due to photonic-band-gap-induced localized long-lived photon dynamics, we discover that cavity photons in photonic crystals do not obey Bose-Einstein statistical distribution. Within the photonic band gap and in the vicinity of the band edge, cavity photons combine the long-lived non-Markovain dynamics with thermal fluctuations together to form photon states that memorize the initial cavity state information. As a result, Bose-Einstein distribution is completely broken down in these regimes, even if the thermal energy is larger or much larger than the cavity detuning energy. In this investigation, a crossover phenomenon from equilibrium to nonequilibrium steady states is also revealed. PMID:25822135

T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges

PubMed Central

2010-01-01

Atomistic Molecular Dynamics provides powerful and flexible tools for the prediction and analysis of molecular and macromolecular systems. Specifically, it provides a means by which we can measure theoretically that which cannot be measured experimentally: the dynamic time-evolution of complex systems comprising atoms and molecules. It is particularly suitable for the simulation and analysis of the otherwise inaccessible details of MHC-peptide interaction and, on a larger scale, the simulation of the immune synapse. Progress has been relatively tentative yet the emergence of truly high-performance computing and the development of coarse-grained simulation now offers us the hope of accurately predicting thermodynamic parameters and of simulating not merely a handful of proteins but larger, longer simulations comprising thousands of protein molecules and the cellular scale structures they form. We exemplify this within the context of immunoinformatics. PMID:21067546

Spatial and temporal variability of chorus and hiss

NASA Astrophysics Data System (ADS)

Santolik, O.; Hospodarsky, G. B.; Kurth, W. S.; Kletzing, C.

2017-12-01

Whistler-mode electromagnetic waves, especially natural emissions of chorus and hiss, have been shown to influence the dynamics of the Van Allen radiation belts via quasi-linear or nonlinear wave particle interactions, transferring energy between different electron populations. Average intensities of chorus and hiss emissions have been found to increase with increasing levels of geomagnetic activity but their stochastic variations in individual spacecraft measurements are usually larger these large-scale temporal effects. To separate temporal and spatial variations of wave characteristics, measurements need to be simultaneously carried out in different locations by identical and/or well calibrated instrumentation. We use two-point survey measurements of the Waves instruments of the Electric and Magnetic Field Instrument Suite and Integrated Science (EMFISIS) onboard two Van Allen Probes to asses spatial and temporal variability of chorus and hiss. We take advantage of a systematic analysis of this large data set which has been collected during 2012-2017 over a range of separation vectors of the two spacecraft. We specifically address the question whether similar variations occur at different places at the same time. Our results indicate that power variations are dominated by separations in MLT at scales larger than 0.5h.

Fiber diameter distributions in the chinchilla's ampullary nerves

NASA Technical Reports Server (NTRS)

Hoffman, Larry F.; Honrubia, Vicente

2002-01-01

A morphometric study of the chinchilla's ampullary nerves was conducted to produce an unbiased accounting of the diameter distribution of their constituent fibers. Diameter analyses were determined from 1 microm plastic-embedded nerve sections taken at a plane immediately proximal to the sensory epithelium. We found these nerves to be composed of 2094+/-573 fibers, having diameters that ranged from 0.5 to 8 microm. The distributions of diameters were positively skewed, where approximately 75% of the fibers were found to have diameters less than 3.5 microm. An analysis of the spatial distribution of diameters within the nerve section revealed that the lateralmost areas of the nerve contained larger fractions of fibers within the smallest diameter quintiles, and the central area harbored greater proportions of the larger diameter quintiles. However, significant fractions of all quintiles were found in all areas. These data were integrated with available data of Fernandez et al. (1998) to produce diameter estimates of calyx, dimorphic, and bouton morphology subpopulations. In view of a general relationship between diameter, innervation locus, and an afferent's physiologic characteristics, these data provide the basis for developing a perspective for the in situ distribution of afferent response dynamics.

The Entry of Nano-dust Particles into the Terrestrial Magnetosphere

NASA Astrophysics Data System (ADS)

Horanyi, M.; Juhasz, A.

2016-12-01

Nano-dust particles have been suggested to be responsible for spurious antenna signals on several spacecraft near 1 AU. Most of these tiny motes are generated in the solar vicinity where the collision-rate between larger inward migrating dust particles increases generating copious amounts of smaller dust grains. The vast majority of the dust grains is predicted to be lost to the Sun, but a fraction of them can be expelled by radiation pressure, and the solar wind plasma flow. Particles in the nano-meter size range can be incorporated in the solar wind, and arrive near 1 AU with characteristic speeds of approximately 400 km/s. Larger, but still submicron sized particles, that are expelled by radiation pressure, represent the so-called beta-meteoroid population. Both of these populations of dust particles can be detected by dedicated dust instruments near 1 AU. A fraction of these particles can also penetrate the terrestrial magnetosphere and possibly bombard spacecraft orbiting the Earth. This talk will explore the dynamics of nano-grains and beta-meteoroids entering the magnetosphere, and predict their spatial, mass and speed distributions as function of solar wind conditions.

Enhanced gel formation in binary mixtures of nanocolloids with short-range attraction

NASA Astrophysics Data System (ADS)

Harden, James L.; Guo, Hongyu; Bertrand, Martine; Shendruk, Tyler N.; Ramakrishnan, Subramanian; Leheny, Robert L.

2018-01-01

Colloidal suspensions transform between fluid and disordered solid states as parameters such as the colloid volume fraction and the strength and nature of the colloidal interactions are varied. Seemingly subtle changes in the characteristics of the colloids can markedly alter the mechanical rigidity and flow behavior of these soft composite materials. This sensitivity creates both a scientific challenge and an opportunity for designing suspensions for specific applications. In this paper, we report a novel mechanism of gel formation in mixtures of weakly attractive nanocolloids with modest size ratio. Employing a combination of x-ray photon correlation spectroscopy, rheometry, and molecular dynamics simulations, we find that gels are stable at remarkably weaker attraction in mixtures with size ratio near two than in the corresponding monodisperse suspensions. In contrast with depletion-driven gelation at larger size ratio, gel formation in the mixtures is triggered by microphase demixing of the species into dense regions of immobile smaller colloids surrounded by clusters of mobile larger colloids that is not predicted by mean-field thermodynamic considerations. These results point to a new route for tailoring nanostructured colloidal solids through judicious combination of interparticle interaction and size distribution.

Polarization mechanism in a ns laser-induced plasma spectroscopy of Al alloy

NASA Astrophysics Data System (ADS)

Aghababaei Nejad, Mahboobeh; Soltanolkotabi, Mahmood; Eslami Majd, Abdollah

2018-01-01

Polarization emission from aluminum alloy by ns laser-induced breakdown spectroscopy (LIBS) is carefully investigated in air using a non-gated CCD camera at integration time of 100 ms. First, the analysis reveals that the small polarization degree is the same for both continuum and discrete line emission spectra which also increases slowly with wavelength growth; second, laser fluence in the range of 347.81-550.10 J/cm2 has no significant changes in plasma polarization; and third, larger polarization in comparison with polarization introduced by preferential reflection of emission from the target surface (Fresnel reflectivity) is observed. The residual fluctuations of the anisotropic recombining plasma and the dynamic polarization of an ion's core are suggested as the possible main sources for observed polarized radiation in ns-LIBS.

Block voter model: Phase diagram and critical behavior

NASA Astrophysics Data System (ADS)

Sampaio-Filho, C. I. N.; Moreira, F. G. B.

2011-11-01

We introduce and study the block voter model with noise on two-dimensional square lattices using Monte Carlo simulations and finite-size scaling techniques. The model is defined by an outflow dynamics where a central set of NPCS spins, here denoted by persuasive cluster spins (PCS), tries to influence the opinion of their neighboring counterparts. We consider the collective behavior of the entire system with varying PCS size. When NPCS>2, the system exhibits an order-disorder phase transition at a critical noise parameter qc which is a monotonically increasing function of the size of the persuasive cluster. We conclude that a larger PCS has more power of persuasion, when compared to a smaller one. It also seems that the resulting critical behavior is Ising-like independent of the range of interaction.

Imaging the distribution of transient viscosity after the 2016 Mw 7.1 Kumamoto earthquake

NASA Astrophysics Data System (ADS)

Moore, James D. P.; Yu, Hang; Tang, Chi-Hsien; Wang, Teng; Barbot, Sylvain; Peng, Dongju; Masuti, Sagar; Dauwels, Justin; Hsu, Ya-Ju; Lambert, Valère; Nanjundiah, Priyamvada; Wei, Shengji; Lindsey, Eric; Feng, Lujia; Shibazaki, Bunichiro

2017-04-01

The deformation of mantle and crustal rocks in response to stress plays a crucial role in the distribution of seismic and volcanic hazards, controlling tectonic processes ranging from continental drift to earthquake triggering. However, the spatial variation of these dynamic properties is poorly understood as they are difficult to measure. We exploited the large stress perturbation incurred by the 2016 earthquake sequence in Kumamoto, Japan, to directly image localized and distributed deformation. The earthquakes illuminated distinct regions of low effective viscosity in the lower crust, notably beneath the Mount Aso and Mount Kuju volcanoes, surrounded by larger-scale variations of viscosity across the back-arc. This study demonstrates a new potential for geodesy to directly probe rock rheology in situ across many spatial and temporal scales.

Thermal conductivity of hexagonal Si and hexagonal Si nanowires from first-principles

NASA Astrophysics Data System (ADS)

Raya-Moreno, Martí; Aramberri, Hugo; Seijas-Bellido, Juan Antonio; Cartoixà, Xavier; Rurali, Riccardo

2017-07-01

We calculate the thermal conductivity, κ, of the recently synthesized hexagonal diamond (lonsdaleite) Si using first-principles calculations and solving the Boltzmann Transport Equation. We find values of κ which are around 40% lower than in the common cubic diamond polytype of Si. The trend is similar for [111] Si nanowires, with reductions of the thermal conductivity that are even larger than in the bulk in some diameter range. The Raman active modes are identified, and the role of mid-frequency optical phonons that arise as a consequence of the reduced symmetry of the hexagonal lattice is discussed. We also show briefly that popular classic potentials used in molecular dynamics might not be suited to describe hexagonal polytypes, discussing the case of the Tersoff potential.

On the melt infiltration of copper coated silicon carbide with an aluminium alloy

NASA Technical Reports Server (NTRS)

Asthana, R.; Rohatgi, P. K.

1992-01-01

Pressure-assisted infiltration of porous compacts of Cu coated and uncoated single crystals of platelet shaped alpha (hexagonal) SiC was used to study infiltration dynamics and particulate wettability with a 2014 Al alloy. The infiltration lengths were measured for a range of experimental variables which included infiltration pressure, infiltration time, and SiC size. A threshold pressure (P(th)) for flow initiation through compacts was identified from an analysis of infiltration data; P(th) decreased while penetration lengths increased with increasing SiC size (more fundamentally, due to changes in interparticle pore size) and with increasing infiltration times. Cu coated SiC led to lower P(th) and 60-80 percent larger penetration lengths compared to uncoated SiC under identical processing conditions.

Gaussian polarizable-ion tight binding.

PubMed

Boleininger, Max; Guilbert, Anne Ay; Horsfield, Andrew P

2016-10-14

To interpret ultrafast dynamics experiments on large molecules, computer simulation is required due to the complex response to the laser field. We present a method capable of efficiently computing the static electronic response of large systems to external electric fields. This is achieved by extending the density-functional tight binding method to include larger basis sets and by multipole expansion of the charge density into electrostatically interacting Gaussian distributions. Polarizabilities for a range of hydrocarbon molecules are computed for a multipole expansion up to quadrupole order, giving excellent agreement with experimental values, with average errors similar to those from density functional theory, but at a small fraction of the cost. We apply the model in conjunction with the polarizable-point-dipoles model to estimate the internal fields in amorphous poly(3-hexylthiophene-2,5-diyl).

Gaussian polarizable-ion tight binding

NASA Astrophysics Data System (ADS)

Boleininger, Max; Guilbert, Anne AY; Horsfield, Andrew P.

2016-10-01

To interpret ultrafast dynamics experiments on large molecules, computer simulation is required due to the complex response to the laser field. We present a method capable of efficiently computing the static electronic response of large systems to external electric fields. This is achieved by extending the density-functional tight binding method to include larger basis sets and by multipole expansion of the charge density into electrostatically interacting Gaussian distributions. Polarizabilities for a range of hydrocarbon molecules are computed for a multipole expansion up to quadrupole order, giving excellent agreement with experimental values, with average errors similar to those from density functional theory, but at a small fraction of the cost. We apply the model in conjunction with the polarizable-point-dipoles model to estimate the internal fields in amorphous poly(3-hexylthiophene-2,5-diyl).

Dephasing of LO-phonon-plasmon hybrid modes in n-type GaAs

NASA Astrophysics Data System (ADS)

Vallée, F.; Ganikhanov, F.; Bogani, F.

1997-11-01

The relaxation dynamics of coherent phononlike LO-phonon-plasmon hybrid modes is investigated in n-doped GaAs using an infrared time-resolved coherent anti-Stokes Raman scattering technique. Measurements performed for different crystal temperatures in the range 10-300 K as a function of the electron density injected by doping show a large reduction of the hybrid mode dephasing time compared to the bare LO-phonon one for densities larger than 1016 cm-3. The results are interpreted in terms of coherent decay of the LO-phonon-plasmon mixed mode in the weak-coupling regime and yield information on the plasmon and electron relaxation. The estimated average electron momentum relaxation times are smaller than those deduced from Hall mobility measurements, as expected from our theoretical model.

Roadmap for Scaling and Multifractals in Geosciences: still a long way to go ?

NASA Astrophysics Data System (ADS)

Schertzer, Daniel; Lovejoy, Shaun

2010-05-01

The interest in scale symmetries (scaling) in Geosciences has never lessened since the first pioneering EGS session on chaos and fractals 22 years ago. The corresponding NP activities have been steadily increasing, covering a wider and wider diversity of geophysical phenomena and range of space-time scales. Whereas interest was initially largely focused on atmospheric turbulence, rain and clouds at small scales, it has quickly broadened to much larger scales and to much wider scale ranges, to include ocean sciences, solid earth and space physics. Indeed, the scale problem being ubiquitous in Geosciences, it is indispensable to share the efforts and the resulting knowledge as much as possible. There have been numerous achievements which have followed from the exploration of larger and larger datasets with finer and finer resolutions, from both modelling and theoretical discussions, particularly on formalisms for intermittency, anisotropy and scale symmetry, multiple scaling (multifractals) vs. simple scaling,. We are now way beyond the early pioneering but tentative attempts using crude estimates of unique scaling exponents to bring some credence to the fact that scale symmetries are key to most nonlinear geoscience problems. Nowadays, we need to better demonstrate that scaling brings effective solutions to geosciences and therefore to society. A large part of the answer corresponds to our capacity to create much more universal and flexible tools to multifractally analyse in straightforward and reliable manners complex and complicated systems such as the climate. Preliminary steps in this direction are already quite encouraging: they show that such approaches explain both the difficulty of classical techniques to find trends in climate scenarios (particularly for extremes) and resolve them with the help of scaling estimators. The question of the reliability and accuracy of these methods is not trivial. After discussing these important, but rather short term issues, we will point out more general questions, which can be put together into the following provocative question: how to convert the classical time evolving deterministic PDE's into dynamical multifractal systems? We will argue that this corresponds to an already active field of research, which include: multifractals as generic solutions of nonlinear PDE (exact results for 1D Burgers equation and a few other caricatures of Navier-Stokes equations, prospects for 3D Burgers equations), cascade structures of numerical weather models, links between multifractal processes and random dynamical systems, and the challenging debate on the most relevant stochastic multifractal formalism, whereas there is already a rather general consent about the deterministic one.

Photoluminescence characterisations of a dynamic aging process of organic-inorganic CH3NH3PbBr3 perovskite

NASA Astrophysics Data System (ADS)

Sheng, R.; Wen, X.; Huang, S.; Hao, X.; Chen, S.; Jiang, Y.; Deng, X.; Green, M. A.; Ho-Baillie, A. W. Y.

2016-01-01

After unprecedented development of organic-inorganic lead halide perovskite solar cells over the past few years, one of the biggest barriers towards their commercialization is the stability of the perovskite material. It is thus important to understand the interaction between the perovskite material and oxygen and/or humidity and the associated degradation process in order to improve device and encapsulation design for better durability. Here we characterize the dynamic aging process in vapour-assisted deposited (VASP) CH3NH3PbBr3 perovskite thin films using advanced optical techniques, such as time-resolved photoluminescence and fluorescence lifetime imaging microscopy (FLIM). Our investigation reveals that the perovskite grains grow spontaneously and the larger grains are formed at room temperature in the presence of moisture and oxygen. This crystallization process leads to a higher density of defects and a shorter carrier lifetime, specifically in the larger grains. Excitation-intensity-dependent steady-state photoluminescence shows both N2 stored and aged perovskite exhibit a super-linear increase of photoluminescence intensity with increasing excitation intensity; and the larger slope in aged sample suggests a larger density of defects is generated, consistent with time-resolved PL measurements.

Hugoniot equation of state and dynamic strength of boron carbide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grady, Dennis E.

Boron carbide ceramics have been particularly problematic in attempts to develop adequate constitutive model descriptions for purposes of analysis of dynamic response in the shock and impact environment. Dynamic strength properties of boron carbide ceramic differ uniquely from comparable ceramics. Furthermore, boron carbide is suspected, but not definitely shown, to undergoing polymorphic phase transformation under shock compression. In the present paper, shock-wave compression measurements conducted over the past 40 years are assessed for the purpose of achieving improved understanding of the dynamic equation of state and strength of boron carbide. In particular, attention is focused on the often ignored Losmore » Alamos National Laboratory (LANL) Hugoniot measurements performed on porous sintered boron carbide ceramic. The LANL data are shown to exhibit two compression anomalies on the shock Hugoniot within the range of 20–60 GPa that may relate to crystallographic structure transitions. More recent molecular dynamics simulations on the compressibility of the boron carbide crystal lattice reveal compression transitions that bear similarities to the LANL Hugoniot results. The same Hugoniot data are complemented with dynamic isentropic compression data for boron carbide extracted from Hugoniot measurements on boron carbide and copper granular mixtures. Other Hugoniot measurements, however, performed on near-full-density boron carbide ceramic differ markedly from the LANL Hugoniot data. These later data exhibit markedly less compressibility and tend not to show comparable anomalies in compressibility. Alternative Hugoniot anomalies, however, are exhibited by the near-full-density data. Experimental uncertainty, Hugoniot strength, and phase transformation physics are all possible explanations for the observed discrepancies. It is reasoned that experimental uncertainty and Hugoniot strength are not likely explanations for the observed differences. The notable mechanistic difference in the processes of shock compression between the LANL data and that of the other studies is the markedly larger inelastic deformation and dissipation experienced in the shock event brought about by compaction of the substantially larger porosity LANL test ceramics. High-pressure diamond anvil cell experiments reveal extensive amorphization, reasoned to be a reversion product of a higher-pressure crystallographic phase, which is a consequence of application of both high pressure and shear deformation to the boron carbide crystal structure. A dependence of shock-induced high-pressure phase transformation in boron carbide on the extent of shear deformation experienced in the shock process offers a plausible explanation for the differences observed in the LANL Hugoniot data on porous ceramic and that of other shock data on near-full-density boron carbide.« less

Dynamic clearance measure to evaluate locomotor and perceptuo-motor strategies used for obstacle circumvention in a virtual environment.

PubMed

Darekar, Anuja; Lamontagne, Anouk; Fung, Joyce

2015-04-01

Circumvention around an obstacle entails a dynamic interaction with the obstacle to maintain a safe clearance. We used a novel mathematical interpolation method based on the modified Shepard's method of Inverse Distance Weighting to compute dynamic clearance that reflected this interaction as well as minimal clearance. This proof-of-principle study included seven young healthy, four post-stroke and four healthy age-matched individuals. A virtual environment designed to assess obstacle circumvention was used to administer a locomotor (walking) and a perceptuo-motor (navigation with a joystick) task. In both tasks, participants were asked to navigate towards a target while avoiding collision with a moving obstacle that approached from either head-on, or 30° left or right. Among young individuals, dynamic clearance did not differ significantly between obstacle approach directions in both tasks. Post-stroke individuals maintained larger and smaller dynamic clearance during the locomotor and the perceptuo-motor task respectively as compared to age-matched controls. Dynamic clearance was larger than minimal distance from the obstacle irrespective of the group, task and obstacle approach direction. Also, in contrast to minimal distance, dynamic clearance can respond differently to different avoidance behaviors. Such a measure can be beneficial in contrasting obstacle avoidance behaviors in different populations with mobility problems. Copyright © 2015 Elsevier B.V. All rights reserved.

Positioning sensor by combining optical projection and photogrammetry

NASA Astrophysics Data System (ADS)

Zheng, Benrui

Six spatial parameters, (x, y, z) for translation, and pitch, roll, and yaw for rotation, are used to describe the 3-dimensional position and orientation of a rigid body---the 6 degrees of freedom (DOF). The ability to measure these parameters is required in a diverse range of applications including machine tool metrology, robot calibration, motion control, motion analysis, and reconstructive surgery. However, there are limitations associated with the currently available measurement systems. Shortcomings include some of the following: short dynamic range, limited accuracy, line of sight restrictions, and capital cost. The objective of this dissertation was to develop a new metrology system that overcomes line of sight restrictions, reduces system costs, allows large dynamic range and has the potential to provide high measurement accuracy. The new metrology system proposed in this dissertation is based on a combination of photogrammetry and optical pattern projection. This system has the potential to enable real-time measurement of a small lightweight module's location. The module generates an optical pattern that is observable on the surrounding walls, and photogrammetry is used to measure the absolute coordinates of features in the projected optical pattern with respect to a defined global coordinate system. By combining these absolute coordinates with the known angular information of the optical projection beams, a minimization algorithm can be used to extract the absolute coordinates and angular orientation of the module itself. The feasibility of the proposed metrology system was first proved through preliminary experimental tests. By using a module with a 7x7 dot matrix pattern, experimental agreement of 1 to 5 parts in 103 was obtained by translating the module over 0.9 m and by rotating it through 60°. The proposed metrology system was modeled through numerical simulations and factors affecting the uncertainty of the measurement were investigated. The simulation results demonstrate that optimum design of the projected pattern gives a lower associated measurement uncertainty than is possible by direct photogrammetric measurement with traditional tie points alone. Based on the simulation results, a few improvements have been made to the proposed metrology systems. These improvements include using a module with larger full view angle and larger number of dots, performing angle calibration for the module, using a virtual camera approach to determine the module location and employing multiple coordinates system for large range rotation measurement. With the new proposed virtual camera approach, experimental agreement at the level of 3 parts in 104 was observed for the one dimension translation test. The virtual camera approach is faster than the algorithm and an additional minimization analysis is no longer needed. In addition, the virtual camera approach offers an additional benefit that it is no longer necessary to identify all dots in the pattern and so is more amenable to use in realistic and usually complicated environments. A preliminary rotation test over 120° was conducted by tying three coordinate systems together. It was observed that the absolute values of the angle differences between the measured angle and the encoder reading are smaller than 0.23° for all measurements. It is found that this proposed metrology system has the ability to measure larger angle range (up to 360°) by using multiple coordinate systems. The uncertainty analysis of the proposed system was performed through Monte Carlo simulation and it was demonstrated that the experimental results are consistent with the analysis.

A simple running model with rolling contact and its role as a template for dynamic locomotion on a hexapod robot.

PubMed

Huang, Ke-Jung; Huang, Chun-Kai; Lin, Pei-Chun

2014-10-07

We report on the development of a robot's dynamic locomotion based on a template which fits the robot's natural dynamics. The developed template is a low degree-of-freedom planar model for running with rolling contact, which we call rolling spring loaded inverted pendulum (R-SLIP). Originating from a reduced-order model of the RHex-style robot with compliant circular legs, the R-SLIP model also acts as the template for general dynamic running. The model has a torsional spring and a large circular arc as the distributed foot, so during locomotion it rolls on the ground with varied equivalent linear stiffness. This differs from the well-known spring loaded inverted pendulum (SLIP) model with fixed stiffness and ground contact points. Through dimensionless steps-to-fall and return map analysis, within a wide range of parameter spaces, the R-SLIP model is revealed to have self-stable gaits and a larger stability region than that of the SLIP model. The R-SLIP model is then embedded as the reduced-order 'template' in a more complex 'anchor', the RHex-style robot, via various mapping definitions between the template and the anchor. Experimental validation confirms that by merely deploying the stable running gaits of the R-SLIP model on the empirical robot with simple open-loop control strategy, the robot can easily initiate its dynamic running behaviors with a flight phase and can move with similar body state profiles to those of the model, in all five testing speeds. The robot, embedded with the SLIP model but performing walking locomotion, further confirms the importance of finding an adequate template of the robot for dynamic locomotion.

Quantum statistical effects in the mass transport of interstitial solutes in a crystalline solid

NASA Astrophysics Data System (ADS)

Woo, C. H.; Wen, Haohua

2017-09-01

The impact of quantum statistics on the many-body dynamics of a crystalline solid at finite temperatures containing an interstitial solute atom (ISA) is investigated. The Mori-Zwanzig theory allows the many-body dynamics of the crystal to be formulated and solved analytically within a pseudo-one-particle approach using the Langevin equation with a quantum fluctuation-dissipation relation (FDR) based on the Debye model. At the same time, the many-body dynamics is also directly solved numerically via the molecular dynamics approach with a Langevin heat bath based on the quantum FDR. Both the analytical and numerical results consistently show that below the Debye temperature of the host lattice, quantum statistics significantly impacts the ISA transport properties, resulting in major departures from both the Arrhenius law of diffusion and the Einstein-Smoluchowski relation between the mobility and diffusivity. Indeed, we found that below one-third of the Debye temperature, effects of vibrations on the quantum mobility and diffusivity are both orders-of-magnitude larger and practically temperature independent. We have shown that both effects have their physical origin in the athermal lattice vibrations derived from the phonon ground state. The foregoing theory is tested in quantum molecular dynamics calculation of mobility and diffusivity of interstitial helium in bcc W. In this case, the Arrhenius law is only valid in a narrow range between ˜300 and ˜700 K. The diffusivity becomes temperature independent on the low-temperature side while increasing linearly with temperature on the high-temperature side.

Tensor network methods for the simulation of open quantum dynamics in multichromophore systems: Application to singlet fission in novel pentacene dimers

NASA Astrophysics Data System (ADS)

Chin, Alex

Singlet fission (SF) is an ultrafast process in which a singlet exciton spontaneously converts into a pair of entangled triplet excitons on neighbouring organic molecules. As a mechanism of multiple exciton generation, it has been suggested as a way to increase the efficiency of organic photovoltaic devices, and its underlying photophysics across a wide range of molecules and materials has attracted significant theoretical attention. Recently, a number of studies using ultrafast nonlinear optics have underscored the importance of intramolecular vibrational dynamics in efficient SF systems, prompting a need for methods capable of simulating open quantum dynamics in the presence of highly structured and strongly coupled environments. Here, a combination of ab initio electronic structure techniques and a new tensor-network methodology for simulating open vibronic dynamics is presented and applied to a recently synthesised dimer of pentacene (DP-Mes). We show that ultrafast (300 fs) SF in this system is driven entirely by symmetry breaking vibrations, and our many-body approach enables the real-time identification and tracking of the ''functional' vibrational dynamics and the role of the ''bath''-like parts of the environment. Deeper analysis of the emerging wave functions points to interesting links between the time at which parts of the environment become relevant to the SF process and the optimal topology of the tensor networks, highlighting the additional insight provided by moving the problem into the natural language of correlated quantum states and how this could lead to simulations of much larger multichromophore systems Supported by The Winton Programme for the Physics of Sustainability.

Myosin isoform determines the conformational dynamics and cooperativity of actin filaments in the strongly bound actomyosin complex

PubMed Central

Prochniewicz, Ewa; Chin, Harvey F.; Henn, Arnon; Hannemann, Diane E.; Olivares, Adrian O.; Thomas, David D.; De La Cruz, Enrique M.

2010-01-01

SUMMARY We have used transient phosphorescence anisotropy (TPA) to detect the microsecond rotational dynamics of erythrosin iodoacetamide (ErIA)-labeled actin strongly bound to single-headed fragments of muscle myosin (muscle S1) and non-muscle myosin V (MV). The conformational dynamics of actin filaments in solution are markedly influenced by the isoform of bound myosin. Both myosins increase the final anisotropy of actin at sub-stoichiometric binding densities, indicating long-range, non-nearest neighbor cooperative restriction of filament rotational dynamics amplitude, but the cooperative unit is larger with MV than muscle S1. Both myosin isoforms also cooperatively affect the actin filament rotational correlation time, but with opposite effects; muscle S1 decreases rates of intrafilament torsional motion, while binding of MV increases the rates of motion. The cooperative effects on the rates of intrafilament motions correlate with the kinetics of myosin binding to actin filaments such that MV binds more rapidly, and muscle myosin more slowly, to partially decorated filaments than to bare filaments. The two isoforms also differ in their effects on the phosphorescence lifetime of the actin-bound ErIA; while muscle S1 increases the lifetime, suggesting decreased aqueous exposure of the probe, MV does not induce a significant change. We conclude that the dynamics and structure of actin in the strongly bound actomyosin complex is determined by the isoform of the bound myosin, in a manner likely to accommodate the diverse functional roles of actomyosin in muscle and non-muscle cells. PMID:19962990

Reproductive Ecology of the Giant African Snail in South Florida: Implications for Eradication Programs.

PubMed

Roda, Amy; Nachman, Gösta; Weihman, Scott; Yong Cong, Mary; Zimmerman, Fredrick

2016-01-01

Giant African snail (Achatina fulica (Bowdich, 1822)), an important invasive snail, was recently found in South Florida, USA. An extensive eradication effort was initiated consisting of pesticide applications, debris removal and hand collections. We studied the reproduction capacity and population dynamics of snails collected from 22 populations for two years to help evaluate the likely success of the eradication program. A total of 23,890 snails, ranging from 25-131 mm, were measured, dissected and the number of eggs in each snail counted. Gravid snails ranged from 48-128 mm. Only 5% of snails had eggs, which were found year round. As the snails increased in size, they were more likely to include reproducing individuals. However, the percentage of gravid snails peaked when snails were approximately 90 mm. Although more prevalent, small (<65 mm) adults contributed fewer eggs to the population than the larger snails. We evaluated the effect of control measures on six populations having >1000 adult snails and used data from the two largest populations to investigate how environmental factors (temperature, humidity, and rainfall) interacted with population dynamics and control measures. More snails were collected in weeks with high humidity and more gravid snails were collected when the temperature was higher. The addition of metaldehyde pesticides had the greatest impact on population dynamics by reducing snail numbers. In populations with fewer snails, their numbers were already declining before the use of metaldehyde, although the new treatment accelerated the process. As a consequence of the eradication program, egg-producing snails were no longer collected from most populations by the end of the study. The aggressive and persistent control efforts apparently lead to reduced populations of egg producing snails, eventually resulting in local extinctions of this important pest.

Ultrafast photoinduced dynamics of the 3,6-diaminoacridinium derivative ATTO 465 in solution.

PubMed

Arden-Jacob, Jutta; Drexhage, Karl-Heinz; Druzhinin, Sergey I; Ekimova, Maria; Flender, Oliver; Lenzer, Thomas; Oum, Kawon; Scholz, Mirko

2013-02-14

The excited state dynamics of the dye ATTO 465, a well-known fluorescence marker for biological applications, have been characterized in various solvents including THF, ethanol, methanol, water and the highly polar protic ionic liquid 2-hydroxyethylammonium formate (2-OH-EAF) by combining results from time-correlated single-photon counting (TCSPC) and ultrafast pump-supercontinuum probe (PSCP) spectroscopy as well as steady-state absorption and fluorescence. In water, 2-OH-EAF and two fluorinated alcohols, there is a pronounced blue-shift and broadening of the S(0) → S(1) absorption band and also a larger Stokes shift than in the other solvents, indicating a particular influence of hydrogen-bonding interactions. S(1) lifetimes from TCSPC at 25 °C range from 3.3 ns to 5.6 ns. An unusual increase in the S(1) lifetime with temperature is observed for ethanol and methanol, however water behaves in the opposite way. The behavior can be tentatively explained by a solvent- and temperature-dependent "proximity effect", where coupling of the close-lying S(1) and S(2) states influences the intramolecular relaxation rate of the dye. In addition, temperature-dependent complex equilibria of ATTO 465 with solvent molecules may influence the measured lifetimes. Several excited-state absorption (ESA) transitions are identified in the PSCP spectra, which are in good agreement with the position of the UV bands in the steady-state absorption spectra. Small shifts of the stimulated emission and ESA bands are consistent with solvation dynamics in the excited electronic state. An additional ~16 ps component in water, visible over the entire spectral range, is tentatively ascribed to a fast IC channel which is accessed by a fraction of ATTO 465 molecules.

Reproductive Ecology of the Giant African Snail in South Florida: Implications for Eradication Programs

PubMed Central

2016-01-01

Giant African snail (Achatina fulica (Bowdich, 1822)), an important invasive snail, was recently found in South Florida, USA. An extensive eradication effort was initiated consisting of pesticide applications, debris removal and hand collections. We studied the reproduction capacity and population dynamics of snails collected from 22 populations for two years to help evaluate the likely success of the eradication program. A total of 23,890 snails, ranging from 25–131 mm, were measured, dissected and the number of eggs in each snail counted. Gravid snails ranged from 48–128 mm. Only 5% of snails had eggs, which were found year round. As the snails increased in size, they were more likely to include reproducing individuals. However, the percentage of gravid snails peaked when snails were approximately 90 mm. Although more prevalent, small (<65 mm) adults contributed fewer eggs to the population than the larger snails. We evaluated the effect of control measures on six populations having >1000 adult snails and used data from the two largest populations to investigate how environmental factors (temperature, humidity, and rainfall) interacted with population dynamics and control measures. More snails were collected in weeks with high humidity and more gravid snails were collected when the temperature was higher. The addition of metaldehyde pesticides had the greatest impact on population dynamics by reducing snail numbers. In populations with fewer snails, their numbers were already declining before the use of metaldehyde, although the new treatment accelerated the process. As a consequence of the eradication program, egg-producing snails were no longer collected from most populations by the end of the study. The aggressive and persistent control efforts apparently lead to reduced populations of egg producing snails, eventually resulting in local extinctions of this important pest. PMID:27861504

High-field Overhauser dynamic nuclear polarization in silicon below the metal-insulator transition.

PubMed

Dementyev, Anatoly E; Cory, David G; Ramanathan, Chandrasekhar

2011-04-21

Single crystal silicon is an excellent system to explore dynamic nuclear polarization (DNP), as it exhibits a continuum of properties from metallic to insulating as a function of doping concentration and temperature. At low doping concentrations DNP has been observed to occur via the solid effect, while at very high-doping concentrations an Overhauser mechanism is responsible. Here we report the hyperpolarization of (29)Si in n-doped silicon crystals, with doping concentrations in the range of (1-3) × 10(17) cm(-3). In this regime exchange interactions between donors become extremely important. The sign of the enhancement in our experiments and its frequency dependence suggest that the (29)Si spins are directly polarized by donor electrons via an Overhauser mechanism within exchange-coupled donor clusters. The exchange interaction between donors only needs to be larger than the silicon hyperfine interaction (typically much smaller than the donor hyperfine coupling) to enable this Overhauser mechanism. Nuclear polarization enhancement is observed for a range of donor clusters in which the exchange energy is comparable to the donor hyperfine interaction. The DNP dynamics are characterized by a single exponential time constant that depends on the microwave power, indicating that the Overhauser mechanism is a rate-limiting step. Since only about 2% of the silicon nuclei are located within 1 Bohr radius of the donor electron, nuclear spin diffusion is important in transferring the polarization to all the spins. However, the spin-diffusion time is much shorter than the Overhauser time due to the relatively weak silicon hyperfine coupling strength. In a 2.35 T magnetic field at 1.1 K, we observed a DNP enhancement of 244 ± 84 resulting in a silicon polarization of 10.4 ± 3.4% following 2 h of microwave irradiation.

Anterior cruciate ligament injury about 20 years post-treatment: A kinematic analysis of one-leg hop.

PubMed

Tengman, E; Grip, H; Stensdotter, Ak; Häger, C K

2015-12-01

Reduced dynamic knee stability, often evaluated with one-leg hops (OLHs), is reported after anterior cruciate ligament (ACL) injury. This may lead to long-standing altered movement patterns, which are less investigated. 3D kinematics during OLH were explored in 70 persons 23 ± 2 years after ACL injury; 33 were treated with physiotherapy in combination with ACL reconstruction (ACL(R)) and 37 with physiotherapy alone (ACL(PT)). Comparisons were made to 33 matched controls. We analyzed (a) maximal knee joint angles and range of motion (flexion, abduction, rotation); (b) medio-lateral position of the center of mass (COM) in relation to knee and ankle joint centers, during take-off and landing phases. Unlike controls, ACL-injured displayed leg asymmetries: less knee flexion and less internal rotation at take-off and landing and more lateral COM related to knee and ankle joint of the injured leg at landing. Compared to controls, ACL(R) had larger external rotation of the injured leg at landing. ACL(PT) showed less knee flexion and larger external rotation at take-off and landing, and larger knee abduction at Landing. COM was more medial in relation to the knee at take-off and less laterally placed relative to the ankle at landing. ACL injury results in long-term kinematic alterations during OLH, which are less evident for ACL(R). © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Characterization of engineered nanoparticles in commercially available spray disinfectant products advertised to contain colloidal silver.

PubMed

Rogers, Kim R; Navratilova, Jana; Stefaniak, Aleksandr; Bowers, Lauren; Knepp, Alycia K; Al-Abed, Souhail R; Potter, Phillip; Gitipour, Alireza; Radwan, Islam; Nelson, Clay; Bradham, Karen D

2018-04-01

Given the potential for human exposure to silver nanoparticles from spray disinfectants and dietary supplements, we characterized the silver-containing nanoparticles in 22 commercial products that advertised the use of silver or colloidal silver as the active ingredient. Characterization parameters included: total silver, fractionated silver (particulate and dissolved), primary particle size distribution, hydrodynamic diameter, particle number, and plasmon resonance absorbance. A high degree of variability between claimed and measured values for total silver was observed. Only 7 of the products showed total silver concentrations within 20% of their nominally reported values. In addition, significant variations in the relative percentages of particulate vs. soluble silver were also measured in many of these products reporting to be colloidal. Primary silver particle size distributions by transmission electron microscopy (TEM) showed two populations of particles - smaller particles (<5nm) and larger particles between 20 and 40nm. Hydrodynamic diameter measurements using nanoparticle tracking analysis (NTA) correlated well with TEM analysis for the larger particles. Z-average (Z-Avg) values measured using dynamic light scattering (DLS); however, were typically larger than both NTA or TEM particle diameters. Plasmon resonance absorbance signatures (peak absorbance at around 400nm indicative of metallic silver nanoparticles) were only noted in 4 of the 9 yellow-brown colored suspensions. Although the total silver concentrations were variable among products, ranging from 0.54mg/L to 960mg/L, silver containing nanoparticles were identified in all of the product suspensions by TEM. Published by Elsevier B.V.

Interactive effects of and light on growth rates and RUBISCO content of small and large centric diatoms

NASA Astrophysics Data System (ADS)

Li, G.; Campbell, D. A.

2015-10-01

Among marine phytoplankton groups, diatoms span the widest range of cell size, with resulting effects upon their nitrogen uptake, photosynthesis and growth responses to light. We grew two strains of marine centric diatoms, the small Thalassiosira pseudonana and the larger T. punctigera in high and low nitrogen media, across a range of growth light levels. Nitrogen and total proteins per cell decreased with increasing growth light in both species when grown under low nitrogen media. Surprisingly, low nitrogen increased the cellular allocation to RUBISCO and the rate of electron transport away from Photosystem II for the smaller diatom under low growth light, and for the larger diatom across the range of growth lights. Low nitrogen decreased the growth rate of the smaller diatom, particularly under higher light, but stimulated the growth rate of the larger diatom. Our results show that the high nitrogen in common growth media favours the growth rate of a small diatom but inhibits growth of a larger species.

A corresponding-states framework for the description of the Mie family of intermolecular potentials

NASA Astrophysics Data System (ADS)

Ramrattan, N. S.; Avendaño, C.; Müller, E. A.; Galindo, A.

2015-05-01

The Mie (λr, λa) intermolecular pair potential has been suggested as an alternative to the traditional Lennard-Jones (12-6) potential for modelling real systems both via simulation and theory as its implementation leads to an accuracy and flexibility in the determination of thermophysical properties that cannot be obtained when potentials of fixed range are considered. An additional advantage of using variable-range potentials is noted in the development of coarse-grained models where, as the superatoms become larger, the effective potentials are seen to become softer. However, the larger number of parameters that characterise the Mie potential (λr, λa, σ, ɛ) can hinder a rational study of the particular effects that each individual parameter have on the observed thermodynamic properties and phase equilibria, and higher degeneracy of models is observed. Here a three-parameter corresponding states model is presented in which a cohesive third parameter α is proposed following a perturbation expansion and assuming a mean-field limit. It is shown that in this approximation the free energy of any two Mie systems sharing the same value of α will be the same. The parameter α is an explicit function of the repulsive and attractive exponents and consequently dictates the form of the intermolecular pair potential. Molecular dynamics simulations of a variety of Mie systems over a range of values of α are carried out and the solid-liquid, liquid-vapour and vapour-solid phase boundaries for the systems considered are presented. Using the simulation data, we confirm that systems of the same α exhibit conformal phase behaviour for the fluid-phase properties as well as for the solid-fluid boundary, although larger differences are noted in the solid region; these can be related to the approximations in the definition of the parameter. Furthermore, it is found that the temperature range over which the vapour-liquid envelope of a given Mie system is stable follows a linear dependency with α when expressed as the ratio of the critical-point temperature to the triple-point temperature. The limit where potentials of the Mie family will not present a stable fluid envelope is predicted in terms of the parameter α and the result is found to be in excellent agreement with previous studies. This unique relation between the fluid range and the cohesive parameter α is shown to be useful to limit the pairs of Mie exponents that can be used in coarse-grained potentials to treat real systems in order to obtain temperature ranges of stability for the fluid envelope consistent with experiment.

Space Use and Movement of a Neotropical Top Predator: The Endangered Jaguar

PubMed Central

Stabach, Jared A.; Fleming, Chris H.; Calabrese, Justin M.; De Paula, Rogério C.; Ferraz, Kátia M. P. M.; Kantek, Daniel L. Z.; Miyazaki, Selma S.; Pereira, Thadeu D. C.; Araujo, Gediendson R.; Paviolo, Agustin; De Angelo, Carlos; Di Bitetti, Mario S.; Cruz, Paula; Lima, Fernando; Cullen, Laury; Sana, Denis A.; Ramalho, Emiliano E.; Carvalho, Marina M.; Soares, Fábio H. S.; Zimbres, Barbara; Silva, Marina X.; Moraes, Marcela D. F.; Vogliotti, Alexandre; May, Joares A.; Haberfeld, Mario; Rampim, Lilian; Sartorello, Leonardo; Ribeiro, Milton C.; Leimgruber, Peter

2016-01-01

Accurately estimating home range and understanding movement behavior can provide important information on ecological processes. Advances in data collection and analysis have improved our ability to estimate home range and movement parameters, both of which have the potential to impact species conservation. Fitting continuous-time movement model to data and incorporating the autocorrelated kernel density estimator (AKDE), we investigated range residency of forty-four jaguars fit with GPS collars across five biomes in Brazil and Argentina. We assessed home range and movement parameters of range resident animals and compared AKDE estimates with kernel density estimates (KDE). We accounted for differential space use and movement among individuals, sex, region, and habitat quality. Thirty-three (80%) of collared jaguars were range resident. Home range estimates using AKDE were 1.02 to 4.80 times larger than KDE estimates that did not consider autocorrelation. Males exhibited larger home ranges, more directional movement paths, and a trend towards larger distances traveled per day. Jaguars with the largest home ranges occupied the Atlantic Forest, a biome with high levels of deforestation and high human population density. Our results fill a gap in the knowledge of the species’ ecology with an aim towards better conservation of this endangered/critically endangered carnivore—the top predator in the Neotropics. PMID:28030568

Space Use and Movement of a Neotropical Top Predator: The Endangered Jaguar.

PubMed

Morato, Ronaldo G; Stabach, Jared A; Fleming, Chris H; Calabrese, Justin M; De Paula, Rogério C; Ferraz, Kátia M P M; Kantek, Daniel L Z; Miyazaki, Selma S; Pereira, Thadeu D C; Araujo, Gediendson R; Paviolo, Agustin; De Angelo, Carlos; Di Bitetti, Mario S; Cruz, Paula; Lima, Fernando; Cullen, Laury; Sana, Denis A; Ramalho, Emiliano E; Carvalho, Marina M; Soares, Fábio H S; Zimbres, Barbara; Silva, Marina X; Moraes, Marcela D F; Vogliotti, Alexandre; May, Joares A; Haberfeld, Mario; Rampim, Lilian; Sartorello, Leonardo; Ribeiro, Milton C; Leimgruber, Peter

2016-01-01

Accurately estimating home range and understanding movement behavior can provide important information on ecological processes. Advances in data collection and analysis have improved our ability to estimate home range and movement parameters, both of which have the potential to impact species conservation. Fitting continuous-time movement model to data and incorporating the autocorrelated kernel density estimator (AKDE), we investigated range residency of forty-four jaguars fit with GPS collars across five biomes in Brazil and Argentina. We assessed home range and movement parameters of range resident animals and compared AKDE estimates with kernel density estimates (KDE). We accounted for differential space use and movement among individuals, sex, region, and habitat quality. Thirty-three (80%) of collared jaguars were range resident. Home range estimates using AKDE were 1.02 to 4.80 times larger than KDE estimates that did not consider autocorrelation. Males exhibited larger home ranges, more directional movement paths, and a trend towards larger distances traveled per day. Jaguars with the largest home ranges occupied the Atlantic Forest, a biome with high levels of deforestation and high human population density. Our results fill a gap in the knowledge of the species' ecology with an aim towards better conservation of this endangered/critically endangered carnivore-the top predator in the Neotropics.

Synchrony in small mammal community dynamics across a forested landscape

Treesearch

Ryan B. Stephens; Daniel J. Hocking; Mariko Yamasaki; Rebecca J. Rowe

2016-01-01

Long- term studies at local scales indicate that fluctuations in abundance among trophically similar species are often temporally synchronized. Complementary studies on synchrony across larger spatial extents are less common, as are studies that investigate the subsequent impacts on community dynamics across the landscape. We investigate the impact of species...

Heuristic Implementation of Dynamic Programming for Matrix Permutation Problems in Combinatorial Data Analysis

ERIC Educational Resources Information Center

Brusco, Michael J.; Kohn, Hans-Friedrich; Stahl, Stephanie

2008-01-01

Dynamic programming methods for matrix permutation problems in combinatorial data analysis can produce globally-optimal solutions for matrices up to size 30x30, but are computationally infeasible for larger matrices because of enormous computer memory requirements. Branch-and-bound methods also guarantee globally-optimal solutions, but computation…

EVALUATION OF RIGHT AND LEFT VENTRICULAR DIASTOLIC FILLING

PubMed Central

Pasipoularides, Ares

2013-01-01

A conceptual fluid-dynamics framework for diastolic filling is developed. The convective deceleration load (CDL) is identified as an important determinant of ventricular inflow during the E-wave (A-wave) upstroke. Convective deceleration occurs as blood moves from the inflow anulus through larger-area cross-sections toward the expanding walls. Chamber dilatation underlies previously unrecognized alterations in intraventricular flow dynamics. The larger the chamber, the larger become the endocardial surface and the CDL. CDL magnitude affects strongly the attainable E-wave (A-wave) peak. This underlies the concept of diastolic ventriculoannular disproportion. Large vortices, whose strength decreases with chamber dilatation, ensue after the E-wave peak and impound inflow kinetic energy, averting an inflow-impeding, convective Bernoulli pressure-rise. This reduces the CDL by a variable extent depending on vortical intensity. Accordingly, the filling vortex facilitates filling to varying degrees, depending on chamber volume. The new framework provides stimulus for functional genomics research, aimed at new insights into ventricular remodeling. PMID:23585308

Strong Ferromagnetically-Coupled Spin Valve Sensor Devices for Droplet Magnetofluidics

PubMed Central

Lin, Gungun; Makarov, Denys; Schmidt, Oliver G.

2015-01-01

We report a magnetofluidic device with integrated strong ferromagnetically-coupled and hysteresis-free spin valve sensors for dynamic monitoring of ferrofluid droplets in microfluidics. The strong ferromagnetic coupling between the free layer and the pinned layer of spin valve sensors is achieved by reducing the spacer thickness, while the hysteresis of the free layer is eliminated by the interplay between shape anisotropy and the strength of coupling. The increased ferromagnetic coupling field up to the remarkable 70 Oe, which is five-times larger than conventional solutions, brings key advantages for dynamic sensing, e.g., a larger biasing field giving rise to larger detection signals, facilitating the operation of devices without saturation of the sensors. Studies on the fundamental effects of an external magnetic field on the evolution of the shape of droplets, as enabled by the non-visual monitoring capability of the device, provides crucial information for future development of a magnetofluidic device for multiplexed assays. PMID:26024419

Kerr-like behaviour of second harmonic generation in the far-off resonant regime

NASA Astrophysics Data System (ADS)

Peřinová, Vlasta; Lukš, Antonín; Křepelka, Jaromír; Leoński, Wiesław; Peřina, Jan

2018-05-01

We separate the Kerr-like behaviour of the second-harmonic generation in the far-off resonant regime from the oscillations caused by the time-dependence of the interaction energy. To this purpose, we consider the approximation obtained from the exact dynamics by the method of small rotations. The Floquet-type decomposition of the approximate dynamics comprises the Kerr-like dynamics and oscillations of the same order of magnitude as those assumed for the exact dynamics of the second-harmonic generation. We have found that a superposition of two states of concentrated quantum phase arises in the fundamental mode in the second-harmonic generation in the far-off resonant limit at a later time than a superposition of two coherent states in the corresponding Kerr medium and the difference is larger for higher initial coherent amplitudes. The quantum phase fluctuation is higher for the same initial coherent amplitudes in the fundamental mode in the second-harmonic generation in the far-off resonant limit than in the corresponding Kerr medium and the difference is larger for higher initial coherent amplitudes.

Effects of variation in chain length on ternary polymer electrolyte - Ionic liquid mixture - A molecular dynamics simulation study

NASA Astrophysics Data System (ADS)

Raju, S. G.; Hariharan, Krishnan S.; Park, Da-Hye; Kang, HyoRang; Kolake, Subramanya Mayya

2015-10-01

Molecular dynamics (MD) simulations of ternary polymer electrolyte - ionic liquid mixtures are conducted using an all-atom model. N-alkyl-N-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide ([CnMPy][TFSI], n = 1, 3, 6, 9) and polyethylene oxide (PEO) are used. Microscopic structure, energetics and dynamics of ionic liquid (IL) in these ternary mixtures are studied. Properties of these four pure IL are also calculated and compared to that in ternary mixtures. Interaction between pyrrolidinium cation and TFSI is stronger and there is larger propensity of ion-pair formation in ternary mixtures. Unlike the case in imidazolium IL, near neighbor structural correlation between TFSI reduces with increase in chain length on cation in both pure IL and ternary mixtures. Using spatial density maps, regions where PEO and TFSI interact with pyrrolidinium cation are identified. Oxygens of PEO are above and below the pyrrolidinium ring and away from the bulky alkyl groups whereas TFSI is present close to nitrogen atom of CnMPy. In pure IL, diffusion coefficient (D) of C3MPy is larger than of TFSI but D of C9MPy and C6MPy are larger than that of TFSI. The reasons for alkyl chain dependent phenomena are explored.

Gravity Wave Dynamics in a Mesospheric Inversion Layer: 2. Instabilities, Turbulence, Fluxes, and Mixing

NASA Astrophysics Data System (ADS)

Fritts, David C.; Wang, Ling; Laughman, Brian; Lund, Thomas S.; Collins, Richard L.

2018-01-01

A companion paper by Fritts, Laughman, et al. (2017) employed an anelastic numerical model to explore the dynamics of gravity waves (GWs) encountering a mesospheric inversion layer (MIL) having a moderate static stability enhancement and a layer of weaker static stability above. That study revealed that MIL responses, including GW transmission, reflection, and instabilities, are sensitive functions of GW parameters. This paper expands on two of the Fritts, Laughman, et al. (2017) simulations to examine GW instability dynamics and turbulence in the MIL; forcing of the mean wind and stability environments by GW, instability, and turbulence fluxes; and associated heat and momentum transports. These direct numerical simulations resolve turbulence inertial-range scales and yield the following results: GW breaking and turbulence in the MIL occur below where they would otherwise, due to enhancements of GW amplitudes and shears in the MIL. 2-D GW and instability heat and momentum fluxes are 20-30 times larger than 3-D instability and turbulence fluxes. Mean fields are driven largely by 2-D GW and instability dynamics rather than 3-D instabilities and turbulence. 2-D and 3-D heat fluxes in regions of strong turbulence yield small departures from initial T(z) and N2(z) profiles, hence do not yield nearly adiabatic "mixed" layers. Our MIL results are consistent with the relation between the turbulent vertical velocity variance and energy dissipation rate proposed by Weinstock (1981) for the limited intervals evaluated.

Investigation of glucose binding sites on insulin.

PubMed

Zoete, Vincent; Meuwly, Markus; Karplus, Martin

2004-05-15

Possible insulin binding sites for D-glucose have been investigated theoretically by docking and molecular dynamics (MD) simulations. Two different docking programs for small molecules were used; Multiple Copy Simultaneous Search (MCSS) and Solvation Energy for Exhaustive Docking (SEED) programs. The configurations resulting from the MCSS search were evaluated with a scoring function developed to estimate the binding free energy. SEED calculations were performed using various values for the dielectric constant of the solute. It is found that scores emphasizing non-polar interactions gave a preferential binding site in agreement with that inferred from recent fluorescence and NMR NOESY experiments. The calculated binding affinity of -1.4 to -3.5 kcal/mol is within the measured range of -2.0 +/- 0.5 kcal/mol. The validity of the binding site is suggested by the dynamical stability of the bound glucose when examined with MD simulations with explicit solvent. Alternative binding sites were found in the simulations and their relative stabilities were estimated. The motions of the bound glucose during molecular dynamics simulations are correlated with the motions of the insulin side chains that are in contact with it and with larger scale insulin motions. These results raise the question of whether glucose binding to insulin could play a role in its activity. The results establish the complementarity of molecular dynamics simulations and normal mode analyses with the search for binding sites proposed with small molecule docking programs. Copyright 2004 Wiley-Liss, Inc.

Understanding Social Dynamics and School Shootings Requires Larger Context. Commentary on: "Bullying, Romantic Rejection, and Conflicts with Teachers: The Crucial Role of Social Dynamics in the Development of School Shootings--A Systematic Review"

ERIC Educational Resources Information Center

Klein, Jessie

2014-01-01

Jessie Klein begins her commentary on "Bullying, Romantic Rejection, and Conflicts with Teachers: The Crucial Role of Social Dynamics in the Development of School Shootings--A Systematic Review" (Sommer, Leuschner, and Scheithauer," International Journal of Developmental Science" v 8, n1-2, p3-24, 2014) by saying that to…

Construction of Rational Maps on the Projective Line with Given Dynamical Structure

DTIC Science & Technology

2016-05-11

References 42 4 1. Introduction The is a paper in arithmetic dynamics, a relatively young field at the intersection of the older studies of number theory...computers became available. The exponentially increased computational power and access to larger data sets rocketed the field forward, allowing...theory and dy- 5 namical systems, have come together to create a new field : arithmetic dynamics. Relative to the study of mathematics as a whole

Inferring Muscle-Tendon Unit Power from Ankle Joint Power during the Push-Off Phase of Human Walking: Insights from a Multiarticular EMG-Driven Model

PubMed Central

2016-01-01

Introduction Inverse dynamics joint kinetics are often used to infer contributions from underlying groups of muscle-tendon units (MTUs). However, such interpretations are confounded by multiarticular (multi-joint) musculature, which can cause inverse dynamics to over- or under-estimate net MTU power. Misestimation of MTU power could lead to incorrect scientific conclusions, or to empirical estimates that misguide musculoskeletal simulations, assistive device designs, or clinical interventions. The objective of this study was to investigate the degree to which ankle joint power overestimates net plantarflexor MTU power during the Push-off phase of walking, due to the behavior of the flexor digitorum and hallucis longus (FDHL)–multiarticular MTUs crossing the ankle and metatarsophalangeal (toe) joints. Methods We performed a gait analysis study on six healthy participants, recording ground reaction forces, kinematics, and electromyography (EMG). Empirical data were input into an EMG-driven musculoskeletal model to estimate ankle power. This model enabled us to parse contributions from mono- and multi-articular MTUs, and required only one scaling and one time delay factor for each subject and speed, which were solved for based on empirical data. Net plantarflexing MTU power was computed by the model and quantitatively compared to inverse dynamics ankle power. Results The EMG-driven model was able to reproduce inverse dynamics ankle power across a range of gait speeds (R2 ≥ 0.97), while also providing MTU-specific power estimates. We found that FDHL dynamics caused ankle power to slightly overestimate net plantarflexor MTU power, but only by ~2–7%. Conclusions During Push-off, FDHL MTU dynamics do not substantially confound the inference of net plantarflexor MTU power from inverse dynamics ankle power. However, other methodological limitations may cause inverse dynamics to overestimate net MTU power; for instance, due to rigid-body foot assumptions. Moving forward, the EMG-driven modeling approach presented could be applied to understand other tasks or larger multiarticular MTUs. PMID:27764110

Inferring Muscle-Tendon Unit Power from Ankle Joint Power during the Push-Off Phase of Human Walking: Insights from a Multiarticular EMG-Driven Model.

PubMed

Honert, Eric C; Zelik, Karl E

2016-01-01

Inverse dynamics joint kinetics are often used to infer contributions from underlying groups of muscle-tendon units (MTUs). However, such interpretations are confounded by multiarticular (multi-joint) musculature, which can cause inverse dynamics to over- or under-estimate net MTU power. Misestimation of MTU power could lead to incorrect scientific conclusions, or to empirical estimates that misguide musculoskeletal simulations, assistive device designs, or clinical interventions. The objective of this study was to investigate the degree to which ankle joint power overestimates net plantarflexor MTU power during the Push-off phase of walking, due to the behavior of the flexor digitorum and hallucis longus (FDHL)-multiarticular MTUs crossing the ankle and metatarsophalangeal (toe) joints. We performed a gait analysis study on six healthy participants, recording ground reaction forces, kinematics, and electromyography (EMG). Empirical data were input into an EMG-driven musculoskeletal model to estimate ankle power. This model enabled us to parse contributions from mono- and multi-articular MTUs, and required only one scaling and one time delay factor for each subject and speed, which were solved for based on empirical data. Net plantarflexing MTU power was computed by the model and quantitatively compared to inverse dynamics ankle power. The EMG-driven model was able to reproduce inverse dynamics ankle power across a range of gait speeds (R2 ≥ 0.97), while also providing MTU-specific power estimates. We found that FDHL dynamics caused ankle power to slightly overestimate net plantarflexor MTU power, but only by ~2-7%. During Push-off, FDHL MTU dynamics do not substantially confound the inference of net plantarflexor MTU power from inverse dynamics ankle power. However, other methodological limitations may cause inverse dynamics to overestimate net MTU power; for instance, due to rigid-body foot assumptions. Moving forward, the EMG-driven modeling approach presented could be applied to understand other tasks or larger multiarticular MTUs.

Dynamic Triggering of Seismic Events and Their Relation to Slow Slip in Interior Alaska

NASA Astrophysics Data System (ADS)

Sims, N. E.; Holtkamp, S. G.

2017-12-01

We conduct a search for dynamically triggered events in the Minto Flats Fault Zone (MFFZ), a left-lateral strike-slip zone expressed as multiple, partially overlapping faults, in central Alaska. We focus on the MFFZ because we have observed slow slip processes (earthquake swarms and Very Low Frequency Earthquakes) and interaction between earthquake swarms and larger main-shock (MS) events in this area before. We utilize the Alaska Earthquake Center catalog to identify potential earthquake swarms and dynamically triggered foreshock and mainshock events along the fault zone. We find 30 swarms occurring in the last two decades, five of which we classify as foreshock (FS) swarms due to their close proximity in both time and space to MS events. Many of the earthquake swarms cluster around 15-20 km depth, which is near the seismic-aseismic transition along this fault zone. Additionally, we observe instances of large teleseismic events such as the M8.6 2012 Sumatra earthquake and M7.4 2012 Guatemala earthquake triggering seismic events within the MFFZ, with the Sumatra earthquake triggering a mainshock event that was preceded by an ongoing earthquake swarm and the Guatemala event triggering earthquake swarms that subsequently transition into a larger mainshock event. In both cases an earthquake swarm transitioned into a mainshock-aftershock event and activity continued for several days after the teleseismic waves had passed, lending some evidence to delayed dynamic triggering of seismic events. We hypothesize that large dynamic transient strain associated with the passage of teleseismic surface waves is triggering slow slip processes near the base of the seismogenic zone. These triggered aseismic transient events result in earthquake swarms, which sometimes lead to the nucleation of larger earthquakes. We utilize network matched filtering to build more robust catalogs of swarm earthquake families in this region to search for additional swarm-like or triggered activity in response to teleseismic surface waves, and to test dynamic triggering hypotheses.

Lyotropic chromonic liquid crystals: From viscoelastic properties to living liquid crystals

NASA Astrophysics Data System (ADS)

Zhou, Shuang

Lyotropic chromonic liquid crystal (LCLC) represents a broad range of molecules, from organic dyes and drugs to DNA, that self-assemble into linear aggregates in water through face-to-face stacking. These linear aggregates of high aspect ratio are capable of orientational order, forming, for example nematic phase. Since the microscopic properties (such as length) of the chromonic aggregates are results of subtle balance between energy and entropy, the macroscopic viscoelastic properties of the nematic media are sensitive to change of external factors. In the first part of this thesis, by using dynamic light scattering and magnetic Frederiks transition techniques, we study the Frank elastic moduli and viscosity coefficients of LCLC disodium cromoglycate (DSCG) and sunset yellow (SSY) as functions of concentration c , temperature T and ionic contents. The elastic moduli of splay (K1) and bend (K3) are in the order of 10pN, about 10 times larger than the twist modulus (K2). The splay modulus K1 and the ratio K1/K3 both increase substantially as T decreases or c increases, which we attribute to the elongation of linear aggregates at lower T or higher c . The bend viscosity is comparable to that of thermotropic liquid crystals, while the splay and twist viscosities are several orders of magnitude larger, changing exponentially with T . Additional ionic additives into the system influence the viscoelastic properties of these systems in a dramatic and versatile way. For example, monovalent salt NaCl decreases bend modulus K3 and increases twist viscosity, while an elevated pH decreases all the parameters. We attribute these features to the ion-induced changes in length and flexibility of building units of LCLC, the chromonic aggregates, a property not found in conventional thermotropic and lyotropic liquid crystals form by covalently bound units of fixed length. The second part of the thesis studies a new active bio-mechanical hybrid system called living liquid crystal (LLC), constructed by mixing LCLC with self-propelled microorganism, bacteria strain called Bacillus subtilis . The coupling between bacterial flow and the nematic long-rang order of the LCLC matrix results in a wealth of intriguing dynamic phenomena, among which are 1) programmable trajectories of bacterial motion guided by patterned director field, 2) cargo particle transportation along such trajectories, 3) local melting of the liquid crystal caused by the bacteria-produced shear flow, 4) birefringence-enabled visualization of microflow generated by nanometer-thick bacterial flagella and 5) activity triggered transition from non-flow uniform state into a flowing one-dimensional pattern and its evolution into a turbulent array of topological defects. In addition, due to the long-rang elastic interaction mediated by the nematic matrix, LLC shows collective dynamics at very low fraction of bacteria, on the order of 0.2%, about 1/10 of bacteria fraction needed in isotropic media for collective motion. Our work suggests an unorthodox design concept to control and manipulate the dynamic behavior of soft active matter and opens the door for potential biosensing and biomedical applications.

Interactions between Polygonal Normal Faults and Larger Normal Faults, Offshore Nova Scotia, Canada

NASA Astrophysics Data System (ADS)

Pham, T. Q. H.; Withjack, M. O.; Hanafi, B. R.

2017-12-01

Polygonal faults, small normal faults with polygonal arrangements that form in fine-grained sedimentary rocks, can influence ground-water flow and hydrocarbon migration. Using well and 3D seismic-reflection data, we have examined the interactions between polygonal faults and larger normal faults on the passive margin of offshore Nova Scotia, Canada. The larger normal faults strike approximately E-W to NE-SW. Growth strata indicate that the larger normal faults were active in the Late Cretaceous (i.e., during the deposition of the Wyandot Formation) and during the Cenozoic. The polygonal faults were also active during the Cenozoic because they affect the top of the Wyandot Formation, a fine-grained carbonate sedimentary rock, and the overlying Cenozoic strata. Thus, the larger normal faults and the polygonal faults were both active during the Cenozoic. The polygonal faults far from the larger normal faults have a wide range of orientations. Near the larger normal faults, however, most polygonal faults have preferred orientations, either striking parallel or perpendicular to the larger normal faults. Some polygonal faults nucleated at the tip of a larger normal fault, propagated outward, and linked with a second larger normal fault. The strike of these polygonal faults changed as they propagated outward, ranging from parallel to the strike of the original larger normal fault to orthogonal to the strike of the second larger normal fault. These polygonal faults hard-linked the larger normal faults at and above the level of the Wyandot Formation but not below it. We argue that the larger normal faults created stress-enhancement and stress-reorientation zones for the polygonal faults. Numerous small, polygonal faults formed in the stress-enhancement zones near the tips of larger normal faults. Stress-reorientation zones surrounded the larger normal faults far from their tips. Fewer polygonal faults are present in these zones, and, more importantly, most polygonal faults in these zones were either parallel or perpendicular to the larger faults.

Image dynamic range test and evaluation of Gaofen-2 dual cameras

NASA Astrophysics Data System (ADS)

Zhang, Zhenhua; Gan, Fuping; Wei, Dandan

2015-12-01

In order to fully understand the dynamic range of Gaofen-2 satellite data and support the data processing, application and next satellites development, in this article, we evaluated the dynamic range by calculating some statistics such as maximum ,minimum, average and stand deviation of four images obtained at the same time by Gaofen-2 dual cameras in Beijing area; then the maximum ,minimum, average and stand deviation of each longitudinal overlap of PMS1,PMS2 were calculated respectively for the evaluation of each camera's dynamic range consistency; and these four statistics of each latitudinal overlap of PMS1,PMS2 were calculated respectively for the evaluation of the dynamic range consistency between PMS1 and PMS2 at last. The results suggest that there is a wide dynamic range of DN value in the image obtained by PMS1 and PMS2 which contains rich information of ground objects; in general, the consistency of dynamic range between the single camera images is in close agreement, but also a little difference, so do the dual cameras. The consistency of dynamic range between the single camera images is better than the dual cameras'.

Synchronisation under shocks: The Lévy Kuramoto model

NASA Astrophysics Data System (ADS)

Roberts, Dale; Kalloniatis, Alexander C.

2018-04-01

We study the Kuramoto model of identical oscillators on Erdős-Rényi (ER) and Barabasi-Alberts (BA) scale free networks examining the dynamics when perturbed by a Lévy noise. Lévy noise exhibits heavier tails than Gaussian while allowing for their tempering in a controlled manner. This allows us to understand how 'shocks' influence individual oscillator and collective system behaviour of a paradigmatic complex system. Skewed α-stable Lévy noise, equivalent to fractional diffusion perturbations, are considered, but overlaid by exponential tempering of rate λ. In an earlier paper we found that synchrony takes a variety of forms for identical Kuramoto oscillators subject to stable Lévy noise, not seen for the Gaussian case, and changing with α: a noise-induced drift, a smooth α dependence of the point of cross-over of synchronisation point of ER and BA networks, and a severe loss of synchronisation at low values of α. In the presence of tempering we observe both analytically and numerically a dramatic change to the α < 1 behaviour where synchronisation is sustained over a larger range of values of the 'noise strength' σ, improved compared to the α > 1 tempered cases. Analytically we study the system close to the phase synchronised fixed point and solve the tempered fractional Fokker-Planck equation. There we observe that densities show stronger support in the basin of attraction at low α for fixed coupling, σ and tempering λ. We then perform numerical simulations for networks of size N = 1000 and average degree d ¯ = 10. There, we compute the order parameter r as a function of σ for fixed α and λ and observe values of r ≈ 1 over larger ranges of σ for α < 1 and λ ≠ 0. In addition we observe drift of both positive and negative slopes for different α and λ when native frequencies are equal, and confirm a sustainment of synchronisation down to low values of α. We propose a mechanism for this in terms of the basic shape of the tempered stable Lévy densities for various α and how it feeds into Kuramoto oscillator dynamics and illustrate this with examples of specific paths.

Tools of Thor - more than a hammer: An overview of some analysis methods for turbulence investigation

NASA Astrophysics Data System (ADS)

Haaland, Stein; Vaivads, Andris; Eriksson, Elin

2016-04-01

In the old Norse mythology Thor was a hammer-wielding god associated with thunder and lightning. THOR is also an acronym for Turbulence Heating ObserveR - a planned space mission dedicated to stydy space plasma turbulence. Whereas the mythological Thor did most of his work with a single tool, Mjølnir - his hammer, the modern version of THOR is far more versatile. The proposed THOR spacecraft comes with a comprehensive package of instruments to explore the energy dissipation and particle energization taking place in turbulent plasma environments. This paper presents a more detailed investigation of some of the analysis methods listed in the submitted THOR proposal. To demonstrate the methods, we have used data from existing spacecraft missions like Cluster and MMS to examine and compare single-spacecraft and multi-spacecraft methods to establish proper frames. The presented analysis methods are based on fundamental plasma laws, such as conservation of mass, momentum and energy and do not require any triangulation or gradients based on multiple spacecraft. Our experience based on Cluster and MMS results show that a well equipped single spacecraft platform, like the proposed THOR mission, very often provides better and less ambiguous results that a constellation of many spacecraft with less capable instrumentation. Limitations in underlying assumptions, such as planarity and linearity, as well as non-optimal spacecraft separation and configurations often limit the possibility to utilize multi-spacecraft methods. We also investigate the role of time resolution and dynamical range of the measurements used in the methods. Since the particle instruments onboard THOR will have a much better time resolution than existing magnetospheric satellite missions, we infer that THOR will be far better suited to resolve time evolution in plasma structures. This is of particular importance in the solar wind and magnetosheat, where frame velocities can be very high. With a larger dynamical range in many of the measurements, and thus the ability to utilize a larger part of the distribution function to calculate moments, the accuracy of key plasma parameters will also be better in THOR measurements.

Size-density relations in dark clouds: Non-LTE effects

NASA Technical Reports Server (NTRS)

Maloney, P.

1986-01-01

One of the major goals of molecular astronomy has been to understand the physics and dynamics of dense interstellar clouds. Because the interpretation of observations of giant molecular clouds is complicated by their very complex structure and the dynamical effects of star formation, a number of studies have concentrated on dark clouds. Leung, Kutner and Mead (1982) (hereafter LKM) and Myers (1983), in studies of CO and NH3 emission, concluded that dark clouds exhibit significant correlations between linewidth and cloud radius of the form delta v varies as R(0.5) and between mean density and radius of the form n varies as R(-1), as originally suggested by Larson (1981). This result suggests that these objects are in virial equilibrium. However, the mean densities inferred from the CO data of LKM are based on an local thermodynamic equilibrium (LTE) analysis of their 13CO data. At the very low mean densities inferred by LKM for the larger clouds in their samples, the assumption of LTE becomes very questionable. As most of the range in R in the density-size correlation comes from the clouds observed in CO, it seems worthwhile to examine how non-LTE effects will influence the derived densities. One way to assess the validity of LTE-derived densities is to construct cloud models and then to interpret them in the same way as the observed data. Microturbulent models of inhomogeneous clouds of varying central concentration with the linewidth-size and mean density-size relations found by Myers show sub-thermal excitation of the 13CO line in the larger clouds, with the result that LTE analysis considerbly underestimates the actual column density. A more general approach which doesn't require detailed modeling of the clouds is to consider whether the observed T sub R*(13CO)/T sub R*(12CO) ratios in the clouds studied by LKM are in the range where the LTE-derived optical depths (and hence column densities) can be seriously in error due to sub-thermal excitation of the 13CO molecule.

Lysozyme encapsulated gold nanoclusters: effects of cluster synthesis on natural protein characteristics.

PubMed

Russell, B A; Jachimska, B; Komorek, P; Mulheran, P A; Chen, Y

2017-03-08

The study of gold nanoclusters (AuNCs) has seen much interest in recent history due to their unique fluorescence properties and environmentally friendly synthesis method using proteins as a growth scaffold. The differences in the physicochemical properties of lysozyme encapsulated AuNCs in comparison to natural lysozyme are characterised in order to determine the effects AuNCs have on natural protein behaviour. The hydrodynamic radius (dynamic light scattering), light absorbance (UV-Vis), electrophoretic mobility, relative density, dynamic viscosity, adsorption (quartz crystal microbalance) and circular dichroism (CD) characteristics of the molecules were studied. It was found that lysozyme forms small dimer/trimer aggregates upon the synthesis of AuNCs within the protein. The diameter of Ly-AuNCs was found to be 8.0 nm across a pH range of 2-11 indicating dimer formation, but larger aggregates with diameters >20 nm were formed between pH 3 and 6. The formation of larger aggregates limits the use of Ly-AuNCs as a fluorescent probe in this pH range. A large shift in the protein's isoelectric point was also observed, shifting from 11.0 to 4.0 upon AuNC synthesis. This resulted in major changes to the adsorption characteristics of lysozyme, observed using a QCM. A monolayer of 8 nm was seen for Ly-AuNCs at pH 4, offering further evidence that the proteins form small aggregates, unlike the natural monomer form of lysozyme. The adsorption of Ly-AuNCs was seen to decrease as pH was increased; this is in major contrast to the lysozyme adsorption behaviour. A decrease in the α-helix content was observed from 25% in natural lysozyme to 1% in Ly-AuNCs. This coincided with an increase in the β-sheet content after AuNC synthesis indicating that the natural structure of lysozyme was lost. The formation of protein dimers, the change in the protein surface charge from positive to negative, and secondary structure alteration caused by the AuNC synthesis must be considered before attempting to utilise Ly-AuNCs as in vivo probes.

Ecosystem CO2 Exchange Across Semiarid Southwestern North America: A Synthesis of Multi-Year Flux Site Observations and its Comparison with Estimates from Terrestrial Biome Models and Remote Sensing

NASA Astrophysics Data System (ADS)

Biederman, J. A.; Scott, R. L.; Goulden, M.; Litvak, M. E.; Kolb, T.; Yepez, E. A.; Garatuza, J.; Oechel, W. C.; Krofcheck, D. J.; Ponce-Campos, G. E.; Bowling, D. R.; Meyers, T. P.; Maurer, G.

2016-12-01

Global carbon cycle studies reveal that semiarid ecosystems dominate the increasing trend and interannual variability of the land CO2 sink. However, the regional terrestrial biome models (TBM) and remote sensing products (RSP) used in large-scale analyses are poorly constrained by ecosystem flux measurements in semiarid regions, which are under-represented in global flux datasets. Here we present eddy covariance measurements from 25 diverse ecosystems in semiarid southwestern North America with ranges in annual precipitation of 100 - 1000 mm, annual temperatures of 2 - 25 °C, and records of 3 - 10 years each (150 site-years in total). We identified seven subregions with unique seasonal dynamics in climate and ecosystem-atmosphere exchange, including net and gross CO2 exchange (photosynthesis and respiration) and evapotranspiration (ET), and we evaluated how well measured dynamics were captured by satellite-based greenness observations of the Enhanced Vegetation Index (EVI). Annual flux integrals were calculated based on site-appropriate ecohydrologic years. Net ecosystem production (NEP) varied between -550 and + 420 g C m-2, highlighting the wide range of regional sink/source function. Annual photosynthesis and respiration were positively related to water availability but were suppressed in warmer years at a given site and at climatically warmer sites, in contrast to positive temperature responses at wetter sites. When precipitation anomalies were spatially coherent across sites (e.g. related to El Niño Southern Oscillation), we found large regional annual anomalies in net and gross CO2 uptake. TBM and RSP were less effective in capturing spatial gradients in mean ET and CO2 exchange across this semiarid region as compared to wetter regions. Measured interannual variability of ET and gross CO2 exchange was 3 - 5 times larger than estimates from TBM or RSP. These results suggest that semiarid regions play an even larger role in regulating interannual variability of the global carbon cycle than currently estimated by models and remote sensing. In on-going work, we expand this spatial-temporal analysis across a broader gradient of water availability using the Fluxnet 2015 dataset.

Future in biomolecular computation

NASA Astrophysics Data System (ADS)

Wimmer, E.

1988-01-01

Large-scale computations for biomolecules are dominated by three levels of theory: rigorous quantum mechanical calculations for molecules with up to about 30 atoms, semi-empirical quantum mechanical calculations for systems with up to several hundred atoms, and force-field molecular dynamics studies of biomacromolecules with 10,000 atoms and more including surrounding solvent molecules. It can be anticipated that increased computational power will allow the treatment of larger systems of ever growing complexity. Due to the scaling of the computational requirements with increasing number of atoms, the force-field approaches will benefit the most from increased computational power. On the other hand, progress in methodologies such as density functional theory will enable us to treat larger systems on a fully quantum mechanical level and a combination of molecular dynamics and quantum mechanics can be envisioned. One of the greatest challenges in biomolecular computation is the protein folding problem. It is unclear at this point, if an approach with current methodologies will lead to a satisfactory answer or if unconventional, new approaches will be necessary. In any event, due to the complexity of biomolecular systems, a hierarchy of approaches will have to be established and used in order to capture the wide ranges of length-scales and time-scales involved in biological processes. In terms of hardware development, speed and power of computers will increase while the price/performance ratio will become more and more favorable. Parallelism can be anticipated to become an integral architectural feature in a range of computers. It is unclear at this point, how fast massively parallel systems will become easy enough to use so that new methodological developments can be pursued on such computers. Current trends show that distributed processing such as the combination of convenient graphics workstations and powerful general-purpose supercomputers will lead to a new style of computing in which the calculations are monitored and manipulated as they proceed. The combination of a numeric approach with artificial-intelligence approaches can be expected to open up entirely new possibilities. Ultimately, the most exciding aspect of the future in biomolecular computing will be the unexpected discoveries.

Magnetic Suspension for Dynamic Spin Rig

NASA Technical Reports Server (NTRS)

Johnson, Dexter

1998-01-01

NASA Lewis Research Center's Dynamic Spin Rig, located in Building 5, Test Cell CW-18, is used to test turbomachinery blades and components by rotating them in a vacuum chamber. A team from Lewis' Machine Dynamics Branch successfully integrated a magnetic bearing and control system into the Dynamic Spin Rig. The magnetic bearing worked very well both to support and shake the shaft. It was demonstrated that the magnetic bearing can transmit more vibrational energy into the shaft and excite some blade modes to larger amplitudes than the existing electromagnetic shakers can.

Population and size distribution of solute-rich mesospecies within mesostructured aqueous amino acid solutions.

PubMed

Jawor-Baczynska, Anna; Moore, Barry D; Lee, Han Seung; McCormick, Alon V; Sefcik, Jan

2013-01-01

Aqueous solutions of highly soluble substances such as small amino acids are usually assumed to be essentially homogenous systems with some degree of short range local structuring due to specific interactions on the sub-nanometre scale (e.g. molecular clusters, hydration shells), usually not exceeding several solute molecules. However, recent theoretical and experimental studies have indicated the presence of much larger supramolecular assemblies or mesospecies in solutions of small organic and inorganic molecules as well as proteins. We investigated both supersaturated and undersaturated aqueous solutions of two simple amino acids (glycine and DL-alanine) using Dynamic Light Scattering (DLS), Brownian Microscopy/Nanoparticles Tracking Analysis (NTA) and Cryogenic Transmission Electron Microscopy (Cryo-TEM). Colloidal scale mesospecies (nanodroplets) were previously reported in supersaturated solutions of these amino acids and were implicated as intermediate species on non-classical crystallization pathways. Surprisingly, we have found that the mesospecies are also present in significant numbers in undersaturated solutions even when the solute concentration is well below the solid-liquid equilibrium concentration (saturation limit). Thus, mesopecies can be observed with mean diameters ranging from 100 to 300 nm and a size distribution that broadens towards larger size with increasing solute concentration. We note that the mesospecies are not a separate phase and the system is better described as a thermodynamically stable mesostructured liquid containing solute-rich domains dispersed within bulk solute solution. At a given temperature, solute molecules in such a mesostructured liquid phase are subject to equilibrium distribution between solute-rich mesospecies and the surrounding bulk solution.

Comparison of the Chiron Quantiplex branched DNA (bDNA) assay and the Abbott Genostics solution hybridization assay for quantification of hepatitis B viral DNA.

PubMed

Kapke, G E; Watson, G; Sheffler, S; Hunt, D; Frederick, C

1997-01-01

Several assays for quantification of DNA have been developed and are currently used in research and clinical laboratories. However, comparison of assay results has been difficult owing to the use of different standards and units of measurements as well as differences between assays in dynamic range and quantification limits. Although a few studies have compared results generated by different assays, there has been no consensus on conversion factors and thorough analysis has been precluded by small sample size and limited dynamic range studied. In this study, we have compared the Chiron branched DNA (bDNA) and Abbott liquid hybridization assays for quantification of hepatitis B virus (HBV) DNA in clinical specimens and have derived conversion factors to facilitate comparison of assay results. Additivity and variance stabilizing (AVAS) regression, a form of non-linear regression analysis, was performed on assay results for specimens from HBV clinical trials. Our results show that there is a strong linear relationship (R2 = 0.96) between log Chiron and log Abbott assay results. Conversion factors derived from regression analyses were found to be non-constant and ranged from 6-40. Analysis of paired assay results below and above each assay's limit of quantification (LOQ) indicated that a significantly (P < 0.01) larger proportion of observations were below the Abbott assay LOQ but above the Chiron assay LOQ, indicating that the Chiron assay is significantly more sensitive than the Abbott assay. Testing of replicate specimens showed that the Chiron assay consistently yielded lower per cent coefficients of variance (% CVs) than the Abbott assay, indicating that the Chiron assay provides superior precision.

Tidal flow dynamics and background fluorescence of the Atlantic Intracoastal Waterway in the vicinity of Sullivan’s Island and the Isle of Palms, South Carolina, 2011-12

USGS Publications Warehouse

Conrads, Paul; Journey, Celeste A.; Clark, Jimmy M.; Levesque, Victor A.

2013-01-01

To effectively plan site-specific studies to understand the connection between wastewater effluent and shellfish beds, data are needed concerning flow dynamics and background fluorescence in the Atlantic Intracoastal Waterway near the effluent outfalls on Sullivan’s Island and the Isle of Palms. Tidal flows were computed by the U.S. Geological Survey for three stations and longitudinal water-quality profiles were collected at high and low tide. Flows for the three U.S. Geological Survey stations, the Atlantic Intracoastal Waterway by the Isle of Palms Marina, the Atlantic Intracoastal Waterway by the Ben M. Sawyer Memorial Bridge at Sullivan’s Island, and Breach Inlet, were computed for the 53-day period from December 4, 2011, to January 26, 2012. The largest flows occurred at Breach Inlet and ranged from -58,600 cubic feet per second (ft3/s) toward the Atlantic Intracoastal Waterway to 63,300 ft3/s toward the Atlantic Ocean. Of the two stations on the Atlantic Intracoastal Waterway, the Sullivan’s Island station had the larger flows and ranged from -6,360 ft3/s to the southwest (toward Charleston Harbor) to 8,930 ft3/s to the northeast. Computed tidal flow at the Isle of Palms station ranged from -3,460 ft3/s toward the southwest to 6,410 ft3/s toward the northeast. The synoptic water-quality study showed that the stations were well mixed vertically and horizontally. All fluorescence measurements (recorded as rhodamine concentration) were below the accuracy of the sensor and the background fluorescence would not likely interfere with a dye-tracer study.

Ecology and Physics of Bacterial Chemotaxis in the Ocean

PubMed Central

Seymour, Justin R.

2012-01-01

Summary: Intuitively, it may seem that from the perspective of an individual bacterium the ocean is a vast, dilute, and largely homogeneous environment. Microbial oceanographers have typically considered the ocean from this point of view. In reality, marine bacteria inhabit a chemical seascape that is highly heterogeneous down to the microscale, owing to ubiquitous nutrient patches, plumes, and gradients. Exudation and excretion of dissolved matter by larger organisms, lysis events, particles, animal surfaces, and fluxes from the sediment-water interface all contribute to create strong and pervasive heterogeneity, where chemotaxis may provide a significant fitness advantage to bacteria. The dynamic nature of the ocean imposes strong selective pressures on bacterial foraging strategies, and many marine bacteria indeed display adaptations that characterize their chemotactic motility as “high performance” compared to that of enteric model organisms. Fast swimming speeds, strongly directional responses, and effective turning and steering strategies ensure that marine bacteria can successfully use chemotaxis to very rapidly respond to chemical gradients in the ocean. These fast responses are advantageous in a broad range of ecological processes, including attaching to particles, exploiting particle plumes, retaining position close to phytoplankton cells, colonizing host animals, and hovering at a preferred height above the sediment-water interface. At larger scales, these responses can impact ocean biogeochemistry by increasing the rates of chemical transformation, influencing the flux of sinking material, and potentially altering the balance of biomass incorporation versus respiration. This review highlights the physical and ecological processes underpinning bacterial motility and chemotaxis in the ocean, describes the current state of knowledge of chemotaxis in marine bacteria, and summarizes our understanding of how these microscale dynamics scale up to affect ecosystem-scale processes in the sea. PMID:23204367

Ecology and physics of bacterial chemotaxis in the ocean.

PubMed

Stocker, Roman; Seymour, Justin R

2012-12-01

Intuitively, it may seem that from the perspective of an individual bacterium the ocean is a vast, dilute, and largely homogeneous environment. Microbial oceanographers have typically considered the ocean from this point of view. In reality, marine bacteria inhabit a chemical seascape that is highly heterogeneous down to the microscale, owing to ubiquitous nutrient patches, plumes, and gradients. Exudation and excretion of dissolved matter by larger organisms, lysis events, particles, animal surfaces, and fluxes from the sediment-water interface all contribute to create strong and pervasive heterogeneity, where chemotaxis may provide a significant fitness advantage to bacteria. The dynamic nature of the ocean imposes strong selective pressures on bacterial foraging strategies, and many marine bacteria indeed display adaptations that characterize their chemotactic motility as "high performance" compared to that of enteric model organisms. Fast swimming speeds, strongly directional responses, and effective turning and steering strategies ensure that marine bacteria can successfully use chemotaxis to very rapidly respond to chemical gradients in the ocean. These fast responses are advantageous in a broad range of ecological processes, including attaching to particles, exploiting particle plumes, retaining position close to phytoplankton cells, colonizing host animals, and hovering at a preferred height above the sediment-water interface. At larger scales, these responses can impact ocean biogeochemistry by increasing the rates of chemical transformation, influencing the flux of sinking material, and potentially altering the balance of biomass incorporation versus respiration. This review highlights the physical and ecological processes underpinning bacterial motility and chemotaxis in the ocean, describes the current state of knowledge of chemotaxis in marine bacteria, and summarizes our understanding of how these microscale dynamics scale up to affect ecosystem-scale processes in the sea.

Nucleation and dynamic rupture on weakly stressed faults sustained by thermal pressurization

NASA Astrophysics Data System (ADS)

Schmitt, Stuart V.; Segall, Paul; Dunham, Eric M.

2015-11-01

Earthquake nucleation requires that the shear stress τ locally reaches a fault's static strength, fσeff, the product of the friction coefficient and effective normal stress. Once rupture initiates, shear heating-induced thermal pressurization can sustain rupture at much lower τ/σeff ratios, a stress condition believed to be the case during most earthquakes. This requires that earthquakes nucleate at heterogeneities. We model nucleation and dynamic rupture on faults in a 2-D elastic medium with rate/state friction and thermal pressurization, subjected to globally low τ but with local stress heterogeneities that permit nucleation. We examine end-member cases of either high-τ or low-σeff heterogeneities. We find that thermal pressurization can sustain slip at τ/σeff values as low as 0.13, compared to static friction of ˜0.7. Background τ (and, to lesser extent, heterogeneity width) controls whether ruptures arrest or are sustained, with extremely low values resulting in arrest. For a small range of background τ, sustained slip is pulse-like. Cessation of slip in a pulse tail can result from either diffusive restrengthening of σeff or a wave-mediated stopping phase that follows the rupture tip. Slightly larger background τ leads to sustained crack-like rupture. Thermal pressurization is stronger at high-τ heterogeneities, resulting in a lower background τ threshold for sustained rupture and potentially larger arresting ruptures. High-stress events also initiate with higher moment rate, although this may be difficult to observe in nature. For arresting ruptures, stress drops and the dependence of fracture energy on mean slip are both consistent with values inferred for small earthquakes.

Dicamba Monooxygenase: Structural Insights into a Dynamic Rieske Oxygenase that Catalyzes an Exocyclic Monooxygenation

DOE Office of Scientific and Technical Information (OSTI.GOV)

D'Ordine, Robert L.; Rydel, Timothy J.; Storek, Michael J.

2009-09-08

Dicamba (2-methoxy-3,6-dichlorobenzoic acid) O-demethylase (DMO) is the terminal Rieske oxygenase of a three-component system that includes a ferredoxin and a reductase. It catalyzes the NADH-dependent oxidative demethylation of the broad leaf herbicide dicamba. DMO represents the first crystal structure of a Rieske non-heme iron oxygenase that performs an exocyclic monooxygenation, incorporating O{sub 2} into a side-chain moiety and not a ring system. The structure reveals a 3-fold symmetric trimer ({alpha}{sub 3}) in the crystallographic asymmetric unit with similar arrangement of neighboring inter-subunit Rieske domain and non-heme iron site enabling electron transport consistent with other structurally characterized Rieske oxygenases. While themore » Rieske domain is similar, differences are observed in the catalytic domain, which is smaller in sequence length than those described previously, yet possessing an active-site cavity of larger volume when compared to oxygenases with larger substrates. Consistent with the amphipathic substrate, the active site is designed to interact with both the carboxylate and aromatic ring with both key polar and hydrophobic interactions observed. DMO structures were solved with and without substrate (dicamba), product (3,6-dichlorosalicylic acid), and either cobalt or iron in the non-heme iron site. The substitution of cobalt for iron revealed an uncommon mode of non-heme iron binding trapped by the non-catalytic Co{sup 2+}, which, we postulate, may be transiently present in the native enzyme during the catalytic cycle. Thus, we present four DMO structures with resolutions ranging from 1.95 to 2.2 {angstrom}, which, in sum, provide a snapshot of a dynamic enzyme where metal binding and substrate binding are coupled to observed structural changes in the non-heme iron and catalytic sites.« less

Effect of Interfacial Bonding on Interphase Properties in SiO2/Epoxy Nanocomposite: A Molecular Dynamics Simulation Study.

PubMed

Wang, Zhikun; Lv, Qiang; Chen, Shenghui; Li, Chunling; Sun, Shuangqing; Hu, Songqing

2016-03-23

Atomistic molecular dynamics simulations have been performed to explore the effect of interfacial bonding on the interphase properties of a nanocomposite system that consists of a silica nanoparticle and the highly cross-linked epoxy matrix. For the structural properties, results show that interfacial covalent bonding can broaden the interphase region by increasing the radial effect range of fluctuated mass density and oriented chains, as well as strengthen the interphase region by improving the thermal stability of interfacial van der Waals excluded volume and reducing the proportion of cis conformers of epoxy segments. The improved thermal stability of the interphase region in the covalently bonded model results in an increase of ∼21 K in the glass transition temperature (Tg) compared to that of the pure epoxy. It is also found that interfacial covalent bonding mainly restricts the volume thermal expansion of the model at temperatures near or larger than Tg. Furthermore, investigations from mean-square displacement and fraction of immobile atoms point out that interfacial covalent and noncovalent bonding induces lower and higher mobility of interphase atoms than that of the pure epoxy, respectively. The obtained critical interfacial bonding ratio when the interphase and matrix atoms have the same mobility is 5.8%. These results demonstrate that the glass transitions of the interphase and matrix will be asynchronous when the interfacial bonding ratio is not 5.8%. Specifically, the interphase region will trigger the glass transition of the matrix when the ratio is larger than 5.8%, whereas it restrains the glass transition of the matrix when the ratio is smaller than 5.8%.

Classrooms as Racialized Spaces: Dynamics of Collaboration, Tension, and Student Attitudes in Urban and Suburban High Schools

ERIC Educational Resources Information Center

Nunn, Lisa M.

2011-01-01

This article interrogates the construction of ethnoracial categories in everyday classroom life and how ethnoracial classroom dynamics contribute to larger patterns of inequality in achievement and unequal college futures for minorities. The study compares one urban and two suburban schools. Drawing on observation data from six classes and 57…

Dynamic Emotional Processing in Experiential Therapy: Two Steps Forward, One Step Back

ERIC Educational Resources Information Center

Pascual-Leone, Antonio

2009-01-01

The study of dynamic and nonlinear change has been a valuable development in psychotherapy process research. However, little advancement has been made in describing how moment-by-moment affective processes contribute to larger units of change. The purpose of this study was to examine observable moment-by-moment sequences in emotional processing as…

A Simulation Program for Dynamic Infrared (IR) Spectra

ERIC Educational Resources Information Center

Zoerb, Matthew C.; Harris, Charles B.

2013-01-01

A free program for the simulation of dynamic infrared (IR) spectra is presented. The program simulates the spectrum of two exchanging IR peaks based on simple input parameters. Larger systems can be simulated with minor modifications. The program is available as an executable program for PCs or can be run in MATLAB on any operating system. Source…

Engagement and Disaffection in the Classroom: Part of a Larger Motivational Dynamic?

ERIC Educational Resources Information Center

Skinner, Ellen; Furrer, Carrie; Marchand, Gwen; Kindermann, Thomas

2008-01-01

A study of 805 4th through 7th graders used a model of motivational development to guide the investigation of the internal dynamics of 4 indicators of behavioral and emotional engagement and disaffection and the facilitative effects of teacher support and 3 student self-perceptions (competence, autonomy, and relatedness) on changes in these…

Model Of Bearing With Hydrostatic Damper

NASA Technical Reports Server (NTRS)

Goggin, David G.

1991-01-01

Improved mathematical model of rotational and vibrational dynamics of bearing package in turbopump incorporates effects of hydrostatic damper. Part of larger finite-element model representing rotational and vibrational dynamics of rotor and housing of pump. Includes representations of deadband and nonlinear stiffness and damping of ball bearings, nonlinear stiffness and damping of hydrostatic film, and stiffness of bearing support. Enables incorporation of effects of hydrostatic damper into overall rotor-dynamic mathematical model without addition of mathematical submodel of major substructure.

Orientational dynamics in a room temperature ionic liquid: Are angular jumps predominant?

NASA Astrophysics Data System (ADS)

Das, Suman; Mukherjee, Biswaroop; Biswas, Ranjit

2018-05-01

Reorientational dynamics of the constituent ions in a room temperature ionic liquid, 1-butyl-3-methylimidazolium hexafluorophosphate ([BMIM][PF6]), are explored via molecular dynamics simulations, and several features of orientation dynamics are summarized. The anion, [PF6]-, not only exhibits a higher propensity to orientation jumps than the cation, [BMIM]+ but also accesses a wider jump angle distribution and larger peak-angle. Jump and waiting time distributions for both the ions depict power-law dependences, suggesting temporally heterogeneous dynamics for the medium. This heterogeneity feature is further highlighted by the finding that the simulated first rank (ℓ = 1) and second rank (ℓ = 2) average reorientational correlation times reflect a severe break-down of Debye's ℓ(ℓ + 1) law for orientational diffusion in an isotropic homogeneous medium. Simulated average H-bond lifetime resides between the mean orientation jump and waiting times, while the structural H-bond relaxation suggests, as in normal liquids, a pronounced presence of translational motion of the partnering ions. Average simulated jump trajectories reveal a strong rotation-translation coupling and indicate relatively larger changes in spatial and angular arrangements for the anion during an orientation jump. In fact, a closer inspection of all these results points toward more heterogeneous dynamics for [PF6]- than [BMIM]+. This is a new observation and may simply be linked to the ion-size. However, such a generalization warrants further study.

Ultra-Slow Dielectric Relaxation Process in Polyols

NASA Astrophysics Data System (ADS)

Yomogida, Yoshiki; Minoguchi, Ayumi; Nozaki, Ryusuke

2004-04-01

Dielectric relaxation processes with relaxation times larger than that for the structural α process are reported for glycerol, xylitol, sorbitol and their mixtures for the first time. Appearance of this ultra-slow process depends on cooling rate. More rapid cooling gives larger dielectric relaxation strength. However, relaxation time is not affected by cooling rate and shows non-Arrhenius temperature dependence with correlation to the α process. It can be considered that non-equilibrium dynamic structure causes the ultra-slow process. Scale of such structure would be much larger than that of the region for the cooperative molecular orientations for the α process.

Experimental Investigation of Hysteretic Dynamic Capillarity Effect in Unsaturated Flow

PubMed Central

Zhuang, Luwen; Qin, Chao‐Zhong; de Waal, Arjen

2017-01-01

Abstract The difference between average pressures of two immiscible fluids is commonly assumed to be the same as macroscopic capillary pressure, which is considered to be a function of saturation only. However, under transient conditions, a dependence of this pressure difference on the time rate of saturation change has been observed by many researchers. This is commonly referred to as dynamic capillarity effect. As a first‐order approximation, the dynamic term is assumed to be linearly dependent on the time rate of change of saturation, through a material coefficient denoted by τ. In this study, a series of laboratory experiments were carried out to quantify the dynamic capillarity effect in an unsaturated sandy soil. Primary, main, and scanning drainage experiments, under both static and dynamic conditions, were performed on a sandy soil in a small cell. The value of the dynamic capillarity coefficient τ was calculated from the air‐water pressure differences and average saturation values during static and dynamic drainage experiments. We found a dependence of τ on saturation, which showed a similar trend for all drainage conditions. However, at any given saturation, the value of τ for primary drainage was larger than the value for main drainage and that was in turn larger than the value for scanning drainage. Each data set was fit a simple log‐linear equation, with different values of fitting parameters. This nonuniqueness of the relationship between τ and saturation and possible causes is discussed. PMID:29398729

Experimental Investigation of Hysteretic Dynamic Capillarity Effect in Unsaturated Flow

NASA Astrophysics Data System (ADS)

Zhuang, Luwen; Hassanizadeh, S. Majid; Qin, Chao-Zhong; de Waal, Arjen

2017-11-01

The difference between average pressures of two immiscible fluids is commonly assumed to be the same as macroscopic capillary pressure, which is considered to be a function of saturation only. However, under transient conditions, a dependence of this pressure difference on the time rate of saturation change has been observed by many researchers. This is commonly referred to as dynamic capillarity effect. As a first-order approximation, the dynamic term is assumed to be linearly dependent on the time rate of change of saturation, through a material coefficient denoted by τ. In this study, a series of laboratory experiments were carried out to quantify the dynamic capillarity effect in an unsaturated sandy soil. Primary, main, and scanning drainage experiments, under both static and dynamic conditions, were performed on a sandy soil in a small cell. The value of the dynamic capillarity coefficient τ was calculated from the air-water pressure differences and average saturation values during static and dynamic drainage experiments. We found a dependence of τ on saturation, which showed a similar trend for all drainage conditions. However, at any given saturation, the value of τ for primary drainage was larger than the value for main drainage and that was in turn larger than the value for scanning drainage. Each data set was fit a simple log-linear equation, with different values of fitting parameters. This nonuniqueness of the relationship between τ and saturation and possible causes is discussed.

Estimation of static parameters based on dynamical and physical properties in limestone rocks

NASA Astrophysics Data System (ADS)

Ghafoori, Mohammad; Rastegarnia, Ahmad; Lashkaripour, Gholam Reza

2018-01-01

Due to the importance of uniaxial compressive strength (UCS), static Young's modulus (ES) and shear wave velocity, it is always worth to predict these parameters from empirical relations that suggested for other formations with same lithology. This paper studies the physical, mechanical and dynamical properties of limestone rocks using the results of laboratory tests which carried out on 60 the Jahrum and the Asmari formations core specimens. The core specimens were obtained from the Bazoft dam site, hydroelectric supply and double-curvature arch dam in Iran. The Dynamic Young's modulus (Ed) and dynamic Poisson ratio were calculated using the existing relations. Some empirical relations were presented to estimate uniaxial compressive strength, as well as static Young's modulus and shear wave velocity (Vs). Results showed the static parameters such as uniaxial compressive strength and static Young's modulus represented low correlation with water absorption. It is also found that the uniaxial compressive strength and static Young's modulus had high correlation with compressional wave velocity and dynamic Young's modulus, respectively. Dynamic Young's modulus was 5 times larger than static Young's modulus. Further, the dynamic Poisson ratio was 1.3 times larger than static Poisson ratio. The relationship between shear wave velocity (Vs) and compressional wave velocity (Vp) was power and positive with high correlation coefficient. Prediction of uniaxial compressive strength based on Vp was better than that based on Vs . Generally, both UCS and static Young's modulus (ES) had good correlation with Ed.

Seasonal variability of PM2.5 and PM10 composition and sources in an urban background site in Southern Italy.

PubMed

Cesari, D; De Benedetto, G E; Bonasoni, P; Busetto, M; Dinoi, A; Merico, E; Chirizzi, D; Cristofanelli, P; Donateo, A; Grasso, F M; Marinoni, A; Pennetta, A; Contini, D

2018-01-15

Comparison of fine and coarse fractions in terms of sources and dynamics is scarce in southeast Mediterranean countries; differences are relevant because of the importance of natural sources like sea spray and Saharan dust advection, because most of the monitoring networks are limited to PM 10 . In this work, the main seasonal variabilities of sources and processes involving fine and coarse PM (particulate matter) were studied at the Environmental-Climate Observatory of Lecce (Southern Italy). Simultaneous PM 2.5 and PM 10 samples were collected between July 2013 and July 2014 and chemically analysed to determine concentrations of several species: OC (organic carbon) and EC (elemental carbon) via thermo-optical analysis, 9 major ions via IC, and 23 metals via ICP-MS. Data was processed through mass closure analysis and Positive Matrix Factorization (PMF) receptor model characterizing seasonal variabilities of nine sources contributions. Organic and inorganic secondary aerosol accounts for 43% of PM 2.5 and 12% of PM 2.5-10 with small seasonal changes. SIA (secondary inorganic aerosol) seasonal pattern is opposite to that of SOC (secondary organic carbon). SOC is larger during the cold period, sulphate (the major contributor to SIA) is larger during summer. Two forms of nitrate were identified: NaNO 3 , correlated with chloride depletion and aging of sea-spray, mainly present in PM 2.5-10 ; NH 4 NO 3 more abundant in PM 2.5 . Biomass burning is a relevant source with larger contribution during autumn and winter because of the influence of domestic heating, however, is not negligible in spring and summer, because of the contributions of fires and agricultural practices. Mass closure analysis and PMF results identify two soil sources: crustal associated to long range transport and carbonates associated to local resuspended dust. Both sources contributes to the coarse fraction and have different dynamics with crustal source contributing mainly in high winds from SE conditions and carbonates during high winds from North direction. Copyright © 2017 Elsevier B.V. All rights reserved.

Functional Brace in ACL Surgery: Force Quantification in an In Vivo Study

PubMed Central

LaPrade, Robert F.; Venderley, Melanie B.; Dahl, Kimi D.; Dornan, Grant J.; Turnbull, Travis Lee

2017-01-01

Background: A need exists for a functional anterior cruciate ligament (ACL) brace that dynamically supports the knee joint to match the angle-dependent forces of a native ACL, especially in the early postoperative period. Purpose/Hypothesis: The purpose of this study was to quantify the posteriorly directed external forces applied to the anterior proximal tibia by both a static and a dynamic force ACL brace. The proximal strap forces applied by the static force brace were hypothesized to remain relatively constant regardless of knee flexion angle compared with those of the dynamic force brace. Study Design: Controlled laboratory study. Methods: Seven healthy adult males (mean age, 27.4 ± 3.4 years; mean height, 1.8 ± 0.1 m; mean body mass, 84.1 ± 11.3 kg) were fitted with both a static and a dynamic force ACL brace. Participants completed 3 functional activities: unloaded extension, sit-to-stand, and stair ascent. Kinematic data were collected using traditional motion-capture techniques while posteriorly directed forces applied to the anterior aspect of both the proximal and distal tibia were simultaneously collected using a customized pressure-mapping technique. Results: The mean posteriorly directed forces applied to the proximal tibia at 30° of flexion by the dynamic force brace during unloaded extension (80.2 N), sit-to-stand (57.5 N), and stair ascent (56.3 N) activities were significantly larger, regardless of force setting, than those applied by the static force brace (10.1 N, 9.5 N, and 11.9 N, respectively; P < .001). Conclusion: The dynamic force ACL brace, compared with the static force brace, applied significantly larger posteriorly directed forces to the anterior proximal tibia in extension, where the ACL is known to experience larger in vivo forces. Further studies are required to determine whether the physiological behavior of the brace will reduce anterior knee laxity and improve long-term patient outcomes. Clinical Relevance: ACL braces that dynamically restrain the proximal tibia in a manner similar to physiological ACL function may improve pre- and postoperative treatment. PMID:28748195

High dynamic range subjective testing

NASA Astrophysics Data System (ADS)

Allan, Brahim; Nilsson, Mike

2016-09-01

This paper describes of a set of subjective tests that the authors have carried out to assess the end user perception of video encoded with High Dynamic Range technology when viewed in a typical home environment. Viewers scored individual single clips of content, presented in High Definition (HD) and Ultra High Definition (UHD), in Standard Dynamic Range (SDR), and in High Dynamic Range (HDR) using both the Perceptual Quantizer (PQ) and Hybrid Log Gamma (HLG) transfer characteristics, and presented in SDR as the backwards compatible rendering of the HLG representation. The quality of SDR HD was improved by approximately equal amounts by either increasing the dynamic range or increasing the resolution to UHD. A further smaller increase in quality was observed in the Mean Opinion Scores of the viewers by increasing both the dynamic range and the resolution, but this was not quite statistically significant.

Rigorous embedding of cell dynamics simulations in the Cahn-Hilliard-Cook framework: Imposing stability and isotropy

NASA Astrophysics Data System (ADS)

Sevink, G. J. A.

2015-05-01

We have rigorously analyzed the stability of the efficient cell dynamics simulations (CDS) method by making use of the special properties of the local averaging operator <<*>>-* in matrix form. Besides resolving a theoretical issue that has puzzled many over the past three decades, this analysis has considerable practical value: It relates CDS directly to finite-difference approximations of the Cahn-Hilliard-Cook equations and provides a straightforward recipe for replacing the original two- or three-dimensional (2D or 3D) averaging operators in CDS by an equivalent (in terms of stability) discrete Laplacian with superior isotropy and scaling behavior. As such, we open up a route to suppress the unphysical reflection of the computational grid in CDS results (grid artifacts). We found that proper rescaling of discrete Laplacians, needed to employ them in CDS, is equivalent to introducing a well-chosen time step in CDS. In turn, our analysis provides stability conditions for phase-field simulations based on the Cahn-Hilliard-Cook equations. Subsequently, we have quantitatively compared the isotropy and scaling behavior of several discrete 2D or 3D Laplacians, thereby extending the significance of this work to general field-based methodology. We found that all considered discrete Laplacians have equivalent scaling behavior along the Cartesian directions. In addition, and somewhat surprisingly, known "isotropic" discrete Laplacians, i.e., isotropic up to fourth order in |k | , become quite anisotropic for larger wave vectors, whereas "less isotropic" discrete Laplacians (second order) are only slightly anisotropic on the whole |k | range. We identified a hard limit to the accuracy with which the discrete Laplacian can emulate the two important properties of the optimal (continuum) Laplacian, as an improvement of the isotropy, by introducing additional points to the stencil, will negatively affect the scaling behavior. Within this limitation, the discrete compact Laplacians in the D n Q m class known from lattice hydrodynamics, D 2 Q 9 in 2D and D 3 Q 19 in 3D, are found to be optimal in terms of isotropy. However, by being only slightly anisotropic on the whole range and enabling larger time steps, the discrete Laplacians that relate to the local averaging operator of Oono and Puri (2D) and Shinozaki and Oono (3D) as well as the less familiar 3D discrete B v V Laplacian developed for dynamic density functional theory are valid alternatives.

Resolving Orbital and Climate Keys of Earth and Extraterrestrial Environments with Dynamics (ROCKE-3D) 1.0: A General Circulation Model for Simulating the Climates of Rocky Planets

NASA Astrophysics Data System (ADS)

Way, M. J.; Aleinov, I.; Amundsen, David S.; Chandler, M. A.; Clune, T. L.; Del Genio, A. D.; Fujii, Y.; Kelley, M.; Kiang, N. Y.; Sohl, L.; Tsigaridis, K.

2017-07-01

Resolving Orbital and Climate Keys of Earth and Extraterrestrial Environments with Dynamics (ROCKE-3D) is a three-dimensional General Circulation Model (GCM) developed at the NASA Goddard Institute for Space Studies for the modeling of atmospheres of solar system and exoplanetary terrestrial planets. Its parent model, known as ModelE2, is used to simulate modern Earth and near-term paleo-Earth climates. ROCKE-3D is an ongoing effort to expand the capabilities of ModelE2 to handle a broader range of atmospheric conditions, including higher and lower atmospheric pressures, more diverse chemistries and compositions, larger and smaller planet radii and gravity, different rotation rates (from slower to more rapid than modern Earth’s, including synchronous rotation), diverse ocean and land distributions and topographies, and potential basic biosphere functions. The first aim of ROCKE-3D is to model planetary atmospheres on terrestrial worlds within the solar system such as paleo-Earth, modern and paleo-Mars, paleo-Venus, and Saturn’s moon Titan. By validating the model for a broad range of temperatures, pressures, and atmospheric constituents, we can then further expand its capabilities to those exoplanetary rocky worlds that have been discovered in the past, as well as those to be discovered in the future. We also discuss the current and near-future capabilities of ROCKE-3D as a community model for studying planetary and exoplanetary atmospheres.

A Prototype Nonhydrostatic Regional-to-Global Nested-Grid Atmosphere Model for Medium-range Weather Forecasting

NASA Astrophysics Data System (ADS)

Harris, L.; Lin, S. J.; Zhou, L.; Chen, J. H.; Benson, R.; Rees, S.

2016-12-01

Limited-area convection-permitting models have proven useful for short-range NWP, but are unable to interact with the larger scales needed for longer lead-time skill. A new global forecast model, fvGFS, has been designed combining a modern nonhydrostatic dynamical core, the GFDL Finite-Volume Cubed-Sphere dynamical core (FV3) with operational GFS physics and initial conditions, and has been shown to provide excellent global skill while improving representation of small-scale phenomena. The nested-grid capability of FV3 allows us to build a regional-to-global variable-resolution model to efficiently refine to 3-km grid spacing over the Continental US. The use of two-way grid nesting allows us to reach these resolutions very efficiently, with the operational requirement easily attainable on current supercomputing systems.Even without a boundary-layer or advanced microphysical scheme appropriate for convection-perrmitting resolutions, the effectiveness of fvGFS can be demonstrated for a variety of weather events. We demonstrate successful proof-of-concept simulations of a variety of phenomena. We show the capability to develop intense hurricanes with realistic fine-scale eyewalls and rainbands. The new model also produces skillful predictions of severe weather outbreaks and of organized mesoscale convective systems. Fine-scale orographic and boundary-layer phenomena are also simulated with excellent fidelity by fvGFS. Further expected improvements are discussed, including the introduction of more sophisticated microphysics and of scale-aware convection schemes.

Soil organic matter stability as indicated by compound-specific radiocarbon analyses

NASA Astrophysics Data System (ADS)

van der Voort, Tessa Sophia; Zell, Claudia; Hagedorn, Frank; McIntyre, Cameron; Eglinton, Timothy Ian

2017-04-01

Carbon storage in soils is increasingly recognized as a key ecosystem function, and molecular-level analyses could be a valuable potential indicator of this storage potential. In this framework, radiocarbon constitutes a powerful tool for unraveling soil carbon dynamics on both decadal as well as centennial and millennial timescales. In this study, we look at the radiocarbon signature of specific compounds (fatty acids and n-alkanes) in two forested ecosystems (temperate and pre-alpine) with the aim of attaining a better understanding of soil organic carbon stability on a molecular level. Radiocarbon dating of the fatty acids and n-alkanes has been coupled to abundance data of these compounds and additionally lignin phenols. We hypothesize that potentially, these long-chain apolar compounds could be a representative indicator of the mineral-bound soil organic carbon pool. These well-studied sites are part of the Long-Term Forest Ecosystem Research (LWF) program of the Swiss Federal Institute for Forest, Snow and Landscape research (WSL). Therefore, a wide suite of ancillary climatic and textural data is available for these sites. Initial results show a wide range of ages in the specific compounds which constitute a much larger range than the ages indicated by the density fractions done on the same samples. Overall, this study explores the use of molecular-level indicators to study soil organic matter dynamics, which could help assess the overall potential vulnerability of soil carbon in various ecosystems.

Dynamic modeling of photothermal interactions for laser-induced interstitial thermotherapy: parameter sensitivity analysis.

PubMed

Jiang, S C; Zhang, X X

2005-12-01

A two-dimensional model was developed to model the effects of dynamic changes in the physical properties on tissue temperature and damage to simulate laser-induced interstitial thermotherapy (LITT) treatment procedures with temperature monitoring. A modified Monte Carlo method was used to simulate photon transport in the tissue in the non-uniform optical property field with the finite volume method used to solve the Pennes bioheat equation to calculate the temperature distribution and the Arrhenius equation used to predict the thermal damage extent. The laser light transport and the heat transfer as well as the damage accumulation were calculated iteratively at each time step. The influences of different laser sources, different applicator sizes, and different irradiation modes on the final damage volume were analyzed to optimize the LITT treatment. The numerical results showed that damage volume was the smallest for the 1,064-nm laser, with much larger, similar damage volumes for the 980- and 850-nm lasers at normal blood perfusion rates. The damage volume was the largest for the 1,064-nm laser with significantly smaller, similar damage volumes for the 980- and 850-nm lasers with temporally interrupted blood perfusion. The numerical results also showed that the variations in applicator sizes, laser powers, heating durations and temperature monitoring ranges significantly affected the shapes and sizes of the thermal damage zones. The shapes and sizes of the thermal damage zones can be optimized by selecting different applicator sizes, laser powers, heating duration times, temperature monitoring ranges, etc.

Energy dynamics and current sheet structure in fluid and kinetic simulations of decaying magnetohydrodynamic turbulence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makwana, K. D., E-mail: kirit.makwana@gmx.com; Cattaneo, F.; Zhdankin, V.

Simulations of decaying magnetohydrodynamic (MHD) turbulence are performed with a fluid and a kinetic code. The initial condition is an ensemble of long-wavelength, counter-propagating, shear-Alfvén waves, which interact and rapidly generate strong MHD turbulence. The total energy is conserved and the rate of turbulent energy decay is very similar in both codes, although the fluid code has numerical dissipation, whereas the kinetic code has kinetic dissipation. The inertial range power spectrum index is similar in both the codes. The fluid code shows a perpendicular wavenumber spectral slope of k{sub ⊥}{sup −1.3}. The kinetic code shows a spectral slope of k{submore » ⊥}{sup −1.5} for smaller simulation domain, and k{sub ⊥}{sup −1.3} for larger domain. We estimate that collisionless damping mechanisms in the kinetic code can account for the dissipation of the observed nonlinear energy cascade. Current sheets are geometrically characterized. Their lengths and widths are in good agreement between the two codes. The length scales linearly with the driving scale of the turbulence. In the fluid code, their thickness is determined by the grid resolution as there is no explicit diffusivity. In the kinetic code, their thickness is very close to the skin-depth, irrespective of the grid resolution. This work shows that kinetic codes can reproduce the MHD inertial range dynamics at large scales, while at the same time capturing important kinetic physics at small scales.« less

Resolving Orbital and Climate Keys of Earth and Extraterrestrial Environments with Dynamics (ROCKE-3D) 1.0: A General Circulation Model for Simulating the Climates of Rocky Planets

NASA Technical Reports Server (NTRS)

Way, M. J.; Aleinov, I.; Amundsen, David S.; Chandler, M. A.; Clune, T. L.; Del Genio, A.; Fujii, Y.; Kelley, M.; Kiang, N. Y.; Sohl, L.;

Lincoln estimates of mallard (Anas platyrhynchos) abundance in North America.

PubMed

Alisauskas, Ray T; Arnold, Todd W; Leafloor, James O; Otis, David L; Sedinger, James S

2014-01-01

Estimates of range-wide abundance, harvest, and harvest rate are fundamental for sound inferences about the role of exploitation in the dynamics of free-ranging wildlife populations, but reliability of existing survey methods for abundance estimation is rarely assessed using alternative approaches. North American mallard populations have been surveyed each spring since 1955 using internationally coordinated aerial surveys, but population size can also be estimated with Lincoln's method using banding and harvest data. We estimated late summer population size of adult and juvenile male and female mallards in western, midcontinent, and eastern North America using Lincoln's method of dividing (i) total estimated harvest, [Formula: see text], by estimated harvest rate, [Formula: see text], calculated as (ii) direct band recovery rate, [Formula: see text], divided by the (iii) band reporting rate, [Formula: see text]. Our goal was to compare estimates based on Lincoln's method with traditional estimates based on aerial surveys. Lincoln estimates of adult males and females alive in the period June-September were 4.0 (range: 2.5-5.9), 1.8 (range: 0.6-3.0), and 1.8 (range: 1.3-2.7) times larger than respective aerial survey estimates for the western, midcontinent, and eastern mallard populations, and the two population estimates were only modestly correlated with each other (western: r = 0.70, 1993-2011; midcontinent: r = 0.54, 1961-2011; eastern: r = 0.50, 1993-2011). Higher Lincoln estimates are predictable given that the geographic scope of inference from Lincoln estimates is the entire population range, whereas sampling frames for aerial surveys are incomplete. Although each estimation method has a number of important potential biases, our review suggests that underestimation of total population size by aerial surveys is the most likely explanation. In addition to providing measures of total abundance, Lincoln's method provides estimates of fecundity and population sex ratio and could be used in integrated population models to provide greater insights about population dynamics and management of North American mallards and most other harvested species.

Detailed records of many unrecovered meteorites in western Canada for which further searches are recommended

NASA Astrophysics Data System (ADS)

Halliday, I.; Blackwell, A. T.; Griffin, A. A.

1989-04-01

Photographic records of the meteoritic fireballs observed between 1971 and 1985 with the Canadian camera network were used to obtain essential data for those events that are believed to have dropped significant meteorites. The mass of the largest surviving fragment for each event was estimated from the dynamic data near the end of the photographic trail. In 28 of these events, the mass of the largest fragment was found to be larger than 0.5 kg; these included the recovered Innisfree meteorite and three events with mass of about 10 kg. Sixteen events had mass estimates from 0.1 to 0.5 kg. Twelve other events were in the smaller mass range. Data are presented on height, velocity, brightness, ground location, and the orbit for each of the 44 events in the mass range 0.1-10 kg. Special attention is given to the probable degree of fragmentation during flight and the effects of flight geometry and the upper atmospheric winds on the expected 'ellipse of fall' distribution on the ground.

Homogenization of sample absorption for the imaging of large and dense fossils with synchrotron microtomography.

PubMed

Sanchez, Sophie; Fernandez, Vincent; Pierce, Stephanie E; Tafforeau, Paul

2013-09-01

Propagation phase-contrast synchrotron radiation microtomography (PPC-SRμCT) has proved to be very successful for examining fossils. Because fossils range widely in taphonomic preservation, size, shape and density, X-ray computed tomography protocols are constantly being developed and refined. Here we present a 1-h procedure that combines a filtered high-energy polychromatic beam with long-distance PPC-SRμCT (sample to detector: 4-16 m) and an attenuation protocol normalizing the absorption profile (tested on 13-cm-thick and 5.242 g cm(-3) locally dense samples but applicable to 20-cm-thick samples). This approach provides high-quality imaging results, which show marked improvement relative to results from images obtained without the attenuation protocol in apparent transmission, contrast and signal-to-noise ratio. The attenuation protocol involves immersing samples in a tube filled with aluminum or glass balls in association with a U-shaped aluminum profiler. This technique therefore provides access to a larger dynamic range of the detector used for tomographic reconstruction. This protocol homogenizes beam-hardening artifacts, thereby rendering it effective for use with conventional μCT scanners.

A digital prediction algorithm for a single-phase boost PFC

NASA Astrophysics Data System (ADS)

Qing, Wang; Ning, Chen; Weifeng, Sun; Shengli, Lu; Longxing, Shi

2012-12-01

A novel digital control algorithm for digital control power factor correction is presented, which is called the prediction algorithm and has a feature of a higher PF (power factor) with lower total harmonic distortion, and a faster dynamic response with the change of the input voltage or load current. For a certain system, based on the current system state parameters, the prediction algorithm can estimate the track of the output voltage and the inductor current at the next switching cycle and get a set of optimized control sequences to perfectly track the trajectory of input voltage. The proposed prediction algorithm is verified at different conditions, and computer simulation and experimental results under multi-situations confirm the effectiveness of the prediction algorithm. Under the circumstances that the input voltage is in the range of 90-265 V and the load current in the range of 20%-100%, the PF value is larger than 0.998. The startup and the recovery times respectively are about 0.1 s and 0.02 s without overshoot. The experimental results also verify the validity of the proposed method.

Characterisation of the Permafrost Carbon Pool

USGS Publications Warehouse

Kuhry, P.; Grosse, G.; Harden, J.W.; Hugelius, G.; Koven, C.D.; Ping, C.-L.; Schirrmeister, L.; Tarnocai, C.

2013-01-01

The current estimate of the soil organic carbon (SOC) pool in the northern permafrost region of 1672 Petagrams (Pg) C is much larger than previously reported and needs to be incorporated in global soil carbon (C) inventories. The Northern Circumpolar Soil Carbon Database (NCSCD), extended to include the range 0–300 cm, is now available online for wider use by the scientific community. An important future aim is to provide quantitative uncertainty ranges for C pool estimates. Recent studies have greatly improved understanding of the regional patterns, landscape distribution and vertical (soil horizon) partitioning of the permafrost C pool in the upper 3 m of soils. However, the deeper C pools in unconsolidated Quaternary deposits need to be better constrained. A general lability classification of the permafrost C pool should be developed to address potential C release upon thaw. The permafrost C pool and its dynamics are beginning to be incorporated into Earth System models, although key periglacial processes such as thermokarst still need to be properly represented to obtain a better quantification of the full permafrost C feedback on global climate change.

Evolution of energy-containing turbulent eddies in the solar wind

NASA Technical Reports Server (NTRS)

Matthaeus, William H.; Oughton, Sean; Pontius, Duane H., Jr.; Zhou, YE

1994-01-01

Previous theoretical treatments of fluid-scale turbulence in the solar wind have concentrated on describing the state and dynamical evolution of fluctuations in the inertial range, which are characterized by power law energy spectra. In the present paper a model for the evolution of somewhat larger, more energetic magnetohydrodynamic (MHD) fluctuations is developed by analogy with classical hydrodynamic turbulence in the quasi-equilibrium range. The model is constructed by assembling and extending existing phenomenologies of homogeneous MHD turbulence, as well as simple two-length-scale models for transport of MHD turbulence in a weekly inhomogeneous medium. A set of equations is presented for the evolution of the turbulence, including the transport and nonlinear evolution of magnetic and kinetic energy, cross helicity, and their correlation scales. Two versions of the model are derived, depending on whether the fluctuations are distributed isotropically in three dimensions or restricted to the two-dimensional plane perpendicular to the mean magnetic field. This model includes a number of potentially important physical effects that have been neglected in previous discussions of transport of solar wind turbulence.

Towards an integrated understanding of how micro scale processes shape groundwater ecosystem functions.

PubMed

Schmidt, Susanne I; Cuthbert, Mark O; Schwientek, Marc

2017-08-15

Micro scale processes are expected to have a fundamental role in shaping groundwater ecosystems and yet they remain poorly understood and under-researched. In part, this is due to the fact that sampling is rarely carried out at the scale at which microorganisms, and their grazers and predators, function and thus we lack essential information. While set within a larger scale framework in terms of geochemical features, supply with energy and nutrients, and exchange intensity and dynamics, the micro scale adds variability, by providing heterogeneous zones at the micro scale which enable a wider range of redox reactions. Here we outline how understanding micro scale processes better may lead to improved appreciation of the range of ecosystems functions taking place at all scales. Such processes are relied upon in bioremediation and we demonstrate that ecosystem modelling as well as engineering measures have to take into account, and use, understanding at the micro scale. We discuss the importance of integrating faunal processes and computational appraisals in research, in order to continue to secure sustainable water resources from groundwater. Copyright © 2017 Elsevier B.V. All rights reserved.

Accurate atomistic potentials and training sets for boron-nitride nanostructures

NASA Astrophysics Data System (ADS)

Tamblyn, Isaac

Boron nitride nanotubes exhibit exceptional structural, mechanical, and thermal properties. They are optically transparent and have high thermal stability, suggesting a wide range of opportunities for structural reinforcement of materials. Modeling can play an important role in determining the optimal approach to integrating nanotubes into a supporting matrix. Developing accurate, atomistic scale models of such nanoscale interfaces embedded within composites is challenging, however, due to the mismatch of length scales involved. Typical nanotube diameters range from 5-50 nm, with a length as large as a micron (i.e. a relevant length-scale for structural reinforcement). Unlike their carbon-based counterparts, well tested and transferable interatomic force fields are not common for BNNT. In light of this, we have developed an extensive training database of BN rich materials, under conditions relevant for BNNT synthesis and composites based on extensive first principles molecular dynamics simulations. Using this data, we have produced an artificial neural network potential capable of reproducing the accuracy of first principles data at significantly reduced computational cost, allowing for accurate simulation at the much larger length scales needed for composite design.

Study of the total reaction cross section via QMD

NASA Astrophysics Data System (ADS)

Yang, Lin-Meng; Guo, Wen-Jun; Zhang, Fan; Ni, Sheng

2013-10-01

This paper presents a new empirical formula to calculate the average nucleon-nucleon (N-N) collision number for the total reaction cross sections (σR). Based on the initial average N-N collision number calculated by quantum molecular dynamics (QMD), quantum correction and Coulomb correction are taken into account within it. The average N-N collision number is calculated by this empirical formula. The total reaction cross sections are obtained within the framework of the Glauber theory. σR of 23Al+12C, 24Al+12C, 25 Al+12C, 26Al+12C and 27Al+12C are calculated in the range of low energy. We also calculate the σR of 27Al+12C with different incident energies. The calculated σR are compared with the experimental data and the results of Glauber theory including the σR of both spherical nuclear and deformed nuclear. It is seen that the calculated σR are larger than σR of spherical nuclear and smaller than σR of deformed nuclear, whereas the results agree well with the experimental data in low-energy range.

Kinetic effects on the velocity-shear-driven instability

NASA Technical Reports Server (NTRS)

Wang, Z.; Pritchett, P. L.; Ashour-Abdalla, M.

1992-01-01

A comparison is made between the properties of the low-frequency long-wavelength velocity-shear-driven instability in kinetic theory and magnetohydrodynamics (MHD). The results show that the removal of adiabaticity along the magnetic field line in kinetic theory leads to modifications in the nature of the instability. Although the threshold for the instability in the two formalisms is the same, the kinetic growth rate and the unstable range in wave-number space can be larger or smaller than the MHD values depending on the ratio between the thermal speed, Alfven speed, and flow speed. When the thermal speed is much larger than the flow speed and the flow speed is larger than the Alfven speed, the kinetic formalism gives a larger maximum growth rate and broader unstable range in wave-number space. In this regime, the normalized wave number for instability can be larger than unity, while in MHD it is always less than unity. The normal mode profile in the kinetic case has a wider spatial extent across the shear layer.

Dynamic spectral shifts of molecular anions in organic glasses. [Pulse radiolysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huddleston, R.K.; Miller, J.R.

1982-06-24

Time-dependent spectra of the radical anions of pyromellitic dianhydride and p-dinitrobenzene have been observed after formation by pulse radiolysis in frozen 2-methyltetrahydrofuran and triacetin glasses. At temperatures near the glass transition, the spectra shift toward the blue over the entire observed time range 100 ns to 100 s), while at temperatures well below the glass transition, the spectral shifts can be stopped or greatly slowed. The magnitudes of the shifts are not large (typically approx. = to 10 nm), but because they are larger than the vibrational line widths, dramatic kinetics may be observed: the absorbance grows or decays bymore » more than a factor of five at some wavelengths. The observations are consistent with a solvent molecule reorientation mechanism for spectral shifts of molecular ions in low-temperature organic glasses. 6 figures.« less

Imaging the distribution of transient viscosity after the 2016 Mw 7.1 Kumamoto earthquake.

PubMed

Moore, James D P; Yu, Hang; Tang, Chi-Hsien; Wang, Teng; Barbot, Sylvain; Peng, Dongju; Masuti, Sagar; Dauwels, Justin; Hsu, Ya-Ju; Lambert, Valère; Nanjundiah, Priyamvada; Wei, Shengji; Lindsey, Eric; Feng, Lujia; Shibazaki, Bunichiro

2017-04-14

The deformation of mantle and crustal rocks in response to stress plays a crucial role in the distribution of seismic and volcanic hazards, controlling tectonic processes ranging from continental drift to earthquake triggering. However, the spatial variation of these dynamic properties is poorly understood as they are difficult to measure. We exploited the large stress perturbation incurred by the 2016 earthquake sequence in Kumamoto, Japan, to directly image localized and distributed deformation. The earthquakes illuminated distinct regions of low effective viscosity in the lower crust, notably beneath the Mount Aso and Mount Kuju volcanoes, surrounded by larger-scale variations of viscosity across the back-arc. This study demonstrates a new potential for geodesy to directly probe rock rheology in situ across many spatial and temporal scales. Copyright © 2017, American Association for the Advancement of Science.

An algorithm for generating modular hierarchical neural network classifiers: a step toward larger scale applications

NASA Astrophysics Data System (ADS)

Roverso, Davide

2003-08-01

Many-class learning is the problem of training a classifier to discriminate among a large number of target classes. Together with the problem of dealing with high-dimensional patterns (i.e. a high-dimensional input space), the many class problem (i.e. a high-dimensional output space) is a major obstacle to be faced when scaling-up classifier systems and algorithms from small pilot applications to large full-scale applications. The Autonomous Recursive Task Decomposition (ARTD) algorithm is here proposed as a solution to the problem of many-class learning. Example applications of ARTD to neural classifier training are also presented. In these examples, improvements in training time are shown to range from 4-fold to more than 30-fold in pattern classification tasks of both static and dynamic character.

An Experimental and Numerical Study of a Supersonic Burner for CFD Model Development

NASA Technical Reports Server (NTRS)

Magnotti, G.; Cutler, A. D.

2008-01-01

A laboratory scale supersonic burner has been developed for validation of computational fluid dynamics models. Detailed numerical simulations were performed for the flow inside the combustor, and coupled with finite element thermal analysis to obtain more accurate outflow conditions. A database of nozzle exit profiles for a wide range of conditions of interest was generated to be used as boundary conditions for simulation of the external jet, or for validation of non-intrusive measurement techniques. A set of experiments was performed to validate the numerical results. In particular, temperature measurements obtained by using an infrared camera show that the computed heat transfer was larger than the measured value. Relaminarization in the convergent part of the nozzle was found to be responsible for this discrepancy, and further numerical simulations sustained this conclusion.

Communication and Collective Consensus Making in Animal Groups via Mechanical Interactions

NASA Astrophysics Data System (ADS)

Várkonyi, Péter L.

2011-06-01

Mechanical constraints have a strong influence on the dynamics and structure of granular aggregations. The contact forces within dense suspensions of active particles may give rise to intriguing phenomena, including anomalous density fluctuations, long-range orientational ordering, and spontaneous pattern formation. Various authors have proposed that these physical phenomena contribute to the ability of animal groups to move coherently. Our systematic numerical simulations confirm that spontaneous interactions of elongated individuals can trigger oriented motion in small groups. They are, however, insufficient in larger ones, despite their significant imprint on the group's internal structure. It is also demonstrated that preferred directions of motion of a minority of group members can be communicated to others solely by mechanical interactions. These findings strengthen the link between pattern formation in active nematics and the collective decision making of social animals.

Damage evolution in viscoelastic polymers

NASA Astrophysics Data System (ADS)

Clements, B. E.

2000-04-01

Constitutive relations are derived for viscoelastic polymers. These relations are applicable to polymers for temperatures above their glass transition temperature and strain rates ranging from quasistatic up to shock regimes. Linear viscoelasticity is assumed for small tensile deformations but nonlinear effects, arising from void growth, become important at larger strains. Our void growth model is based on a generalization of Eshelby's Green's function solution to the problem of an ellipsoidal void in an elastic material. We apply our analysis to study the mechanical properties of polyvinyl acetate under dynamic loading conditions. Void concentration and aspect ratio considerations are found to be important in general deformation events. Uniaxial tension tends to favor aspect ratio change, while non-spherical voids are observed to evolve into spherical ones as tensile strain approaches triaxiality. [Research supported by the USDOE under contract W-7405-ENG-36

Rumor Diffusion in an Interests-Based Dynamic Social Network

PubMed Central

Mao, Xinjun; Guessoum, Zahia; Zhou, Huiping

2013-01-01

To research rumor diffusion in social friend network, based on interests, a dynamic friend network is proposed, which has the characteristics of clustering and community, and a diffusion model is also proposed. With this friend network and rumor diffusion model, based on the zombie-city model, some simulation experiments to analyze the characteristics of rumor diffusion in social friend networks have been conducted. The results show some interesting observations: (1) positive information may evolve to become a rumor through the diffusion process that people may modify the information by word of mouth; (2) with the same average degree, a random social network has a smaller clustering coefficient and is more beneficial for rumor diffusion than the dynamic friend network; (3) a rumor is spread more widely in a social network with a smaller global clustering coefficient than in a social network with a larger global clustering coefficient; and (4) a network with a smaller clustering coefficient has a larger efficiency. PMID:24453911

Rumor diffusion in an interests-based dynamic social network.

PubMed

Tang, Mingsheng; Mao, Xinjun; Guessoum, Zahia; Zhou, Huiping

2013-01-01

To research rumor diffusion in social friend network, based on interests, a dynamic friend network is proposed, which has the characteristics of clustering and community, and a diffusion model is also proposed. With this friend network and rumor diffusion model, based on the zombie-city model, some simulation experiments to analyze the characteristics of rumor diffusion in social friend networks have been conducted. The results show some interesting observations: (1) positive information may evolve to become a rumor through the diffusion process that people may modify the information by word of mouth; (2) with the same average degree, a random social network has a smaller clustering coefficient and is more beneficial for rumor diffusion than the dynamic friend network; (3) a rumor is spread more widely in a social network with a smaller global clustering coefficient than in a social network with a larger global clustering coefficient; and (4) a network with a smaller clustering coefficient has a larger efficiency.

How Molecular Size Impacts RMSD Applications in Molecular Dynamics Simulations.

PubMed

Sargsyan, Karen; Grauffel, Cédric; Lim, Carmay

2017-04-11

The root-mean-square deviation (RMSD) is a similarity measure widely used in analysis of macromolecular structures and dynamics. As increasingly larger macromolecular systems are being studied, dimensionality effects such as the "curse of dimensionality" (a diminishing ability to discriminate pairwise differences between conformations with increasing system size) may exist and significantly impact RMSD-based analyses. For such large bimolecular systems, whether the RMSD or other alternative similarity measures might suffer from this "curse" and lose the ability to discriminate different macromolecular structures had not been explicitly addressed. Here, we show such dimensionality effects for both weighted and nonweighted RMSD schemes. We also provide a mechanism for the emergence of the "curse of dimensionality" for RMSD from the law of large numbers by showing that the conformational distributions from which RMSDs are calculated become increasingly similar as the system size increases. Our findings suggest the use of weighted RMSD schemes for small proteins (less than 200 residues) and nonweighted RMSD for larger proteins when analyzing molecular dynamics trajectories.

Tip induced mechanical deformation of epitaxial graphene grown on reconstructed 6H-SiC(0001) surface during scanning tunneling and atomic force microscopy studies.

PubMed

Meza, José Antonio Morán; Lubin, Christophe; Thoyer, François; Cousty, Jacques

2015-01-26

The structural and mechanical properties of an epitaxial graphene (EG) monolayer thermally grown on top of a 6H-SiC(0001) surface were studied by combined dynamic scanning tunneling microscopy (STM) and frequency modulation atomic force microscopy (FM-AFM). Experimental STM, dynamic STM and AFM images of EG on 6H-SiC(0001) show a lattice with a 1.9 nm period corresponding to the (6 × 6) quasi-cell of the SiC surface. The corrugation amplitude of this (6 × 6) quasi-cell, measured from AFM topographies, increases with the setpoint value of the frequency shift Δf (15-20 Hz, repulsive interaction). Excitation variations map obtained simultaneously with the AFM topography shows that larger dissipation values are measured in between the topographical bumps of the (6 × 6) quasi-cell. These results demonstrate that the AFM tip deforms the graphene monolayer. During recording in dynamic STM mode, a frequency shift (Δf) map is obtained in which Δf values range from 41 to 47 Hz (repulsive interaction). As a result, we deduced that the STM tip, also, provokes local mechanical distortions of the graphene monolayer. The origin of these tip-induced distortions is discussed in terms of electronic and mechanical properties of EG on 6H-SiC(0001).

Wind Tunnel Test of Subscale Ringsail and Disk-Gap-Band Parachutes

NASA Technical Reports Server (NTRS)

Zumwalt, Carlie H.; Cruz, Juan R.; Keller, Donald F.; O'Farrell, Clara

2016-01-01

A subsonic wind tunnel test was conducted to determine the drag and static aerodynamic coefficients, as well as to capture the dynamic motions of a new Supersonic Ringsail parachute developed by the Low Density Supersonic Decelerator Project. To provide a comparison against current Mars parachute technology, the Mars Science Laboratory's Disk-Gap-Band parachute was also included in the test. To account for the effect of fabric permeability, two fabrics ("low" and "standard" permeability) were used to fabricate each parachute canopy type, creating four combinations of canopy type and fabric material. A wide range of test conditions were covered during the test, spanning Mach numbers from 0.09 to 0.5, and static pressures from 103 to 2116 pounds per square inch (psf) (nominal values). The fabric permeability is shown to have a first-order effect on the aerodynamic coefficients and dynamic motions of the parachutes. For example, for a given parachute type and test condition, models fabricated from "low" permeability fabric always have a larger drag coefficient than models fabricated from "standard" permeability material. This paper describes the test setup and conditions, how the results were analyzed, and presents and discusses a sample of the results. The data collected during this test is being used to create and improve parachute aerodynamic databases for use in flight dynamics simulations for missions to Mars.

Self-evolving atomistic kinetic Monte Carlo simulations of defects in materials

DOE PAGES

Xu, Haixuan; Beland, Laurent K.; Stoller, Roger E.; ...

2015-01-29

The recent development of on-the-fly atomistic kinetic Monte Carlo methods has led to an increased amount attention on the methods and their corresponding capabilities and applications. In this review, the framework and current status of Self-Evolving Atomistic Kinetic Monte Carlo (SEAKMC) are discussed. SEAKMC particularly focuses on defect interaction and evolution with atomistic details without assuming potential defect migration/interaction mechanisms and energies. The strength and limitation of using an active volume, the key concept introduced in SEAKMC, are discussed. Potential criteria for characterizing an active volume are discussed and the influence of active volume size on saddle point energies ismore » illustrated. A procedure starting with a small active volume followed by larger active volumes was found to possess higher efficiency. Applications of SEAKMC, ranging from point defect diffusion, to complex interstitial cluster evolution, to helium interaction with tungsten surfaces, are summarized. A comparison of SEAKMC with molecular dynamics and conventional object kinetic Monte Carlo is demonstrated. Overall, SEAKMC is found to be complimentary to conventional molecular dynamics, especially when the harmonic approximation of transition state theory is accurate. However it is capable of reaching longer time scales than molecular dynamics and it can be used to systematically increase the accuracy of other methods such as object kinetic Monte Carlo. Furthermore, the challenges and potential development directions are also outlined.« less

Can mastication in children with cerebral palsy be analyzed by clinical observation, dynamic ultrasound and 3D kinematics?

PubMed

Remijn, L; Groen, B E; Speyer, R; van Limbeek, J; Vermaire, J A; van den Engel-Hoek, L; Nijhuis-van der Sanden, M W G

2017-02-01

The aim of this study was to explore the feasibility of the Mastication Observation and Evaluation (MOE) instrument, dynamic ultrasound and 3D kinematic measurements to describe mastication in children with spastic cerebral palsy and typically developing children. Masticatory movements during five trials of eating a biscuit were assessed in 8 children with cerebral palsy, spastic type (mean age 9.08years) and 14 typically developing children (mean age 9.01years). Differences between trials were tested (t-test) and the mastication of individual children with cerebral palsy was analyzed. MOE scores ranged from 17 to 31 (median 24) for the children with cerebral palsy and from 28 to 32 (median 31) for the typically developing children. There was an increased chewing cycle duration, a smaller left-right and up-down tongue displacement and larger anterior mandible movements for the trials (n=40) of cerebral palsy children (p<0.000 for all comparisons) compared to the trials of typically developing children (n=70). The MOE captures differences in mastication between individual children with cerebral palsy. The MOE items 'jaw movement' and 'fluency and coordination' showed the most similarity with the objective measurements. Objective measurements of dynamic ultrasound and 3D kinematics complemented data from the MOE instrument. Copyright © 2016 Elsevier Ltd. All rights reserved.