Effects of ocean acidification increase embryonic sensitivity to thermal extremes in Atlantic cod, Gadus morhua.

PubMed

Dahlke, Flemming T; Leo, Elettra; Mark, Felix C; Pörtner, Hans-Otto; Bickmeyer, Ulf; Frickenhaus, Stephan; Storch, Daniela

2017-04-01

Thermal tolerance windows serve as a powerful tool for estimating the vulnerability of marine species and their life stages to increasing temperature means and extremes. However, it remains uncertain to which extent additional drivers, such as ocean acidification, modify organismal responses to temperature. This study investigated the effects of CO 2 -driven ocean acidification on embryonic thermal sensitivity and performance in Atlantic cod, Gadus morhua, from the Kattegat. Fertilized eggs were exposed to factorial combinations of two PCO 2 conditions (400 μatm vs. 1100 μatm) and five temperature treatments (0, 3, 6, 9 and 12 °C), which allow identifying both lower and upper thermal tolerance thresholds. We quantified hatching success, oxygen consumption (MO 2 ) and mitochondrial functioning of embryos as well as larval morphometrics at hatch and the abundance of acid-base-relevant ionocytes on the yolk sac epithelium of newly hatched larvae. Hatching success was high under ambient spawning conditions (3-6 °C), but decreased towards both cold and warm temperature extremes. Elevated PCO 2 caused a significant decrease in hatching success, particularly at cold (3 and 0 °C) and warm (12 °C) temperatures. Warming imposed limitations to MO 2 and mitochondrial capacities. Elevated PCO 2 stimulated MO 2 at cold and intermediate temperatures, but exacerbated warming-induced constraints on MO 2 , indicating a synergistic interaction with temperature. Mitochondrial functioning was not affected by PCO 2 . Increased MO 2 in response to elevated PCO 2 was paralleled by reduced larval size at hatch. Finally, ionocyte abundance decreased with increasing temperature, but did not differ between PCO 2 treatments. Our results demonstrate increased thermal sensitivity of cod embryos under future PCO 2 conditions and suggest that acclimation to elevated PCO 2 requires reallocation of limited resources at the expense of embryonic growth. We conclude that ocean acidification constrains the thermal performance window of embryos, which has important implication for the susceptibility of cod to projected climate change. © 2016 John Wiley & Sons Ltd.

Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population

PubMed Central

Stiasny, Martina H.; Mittermayer, Felix H.; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B. H.; Clemmesen, Catriona

2016-01-01

How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae’s sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks. PMID:27551924

Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population.

PubMed

Stiasny, Martina H; Mittermayer, Felix H; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B H; Clemmesen, Catriona

2016-01-01

How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae's sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks.

Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua).

PubMed

Bakke, Ingrid; Coward, Eivind; Andersen, Tom; Vadstein, Olav

2015-10-01

Marine fish larvae are immature upon hatching, and share their environment with high numbers of bacteria. The microbial communities associated with developing fish larvae might be structured by other factors than those important in developing terrestrial animals. Here, we analysed the beta (β)-diversity of the microbiota associated with developing cod larvae and compared it with the bacterial communities in water and live feed by applying pyrosequencing of bar coded v4 16S rDNA amplicons. A total of 15 phyla were observed in the cod larval microbiota. Proteobacteria was the most abundant, followed by Firmicutes, Bacteroidetes and Actinobacteria. The composition and diversity of the cod larval microbiota changed considerably with age. The temporal and spatial patterns of β-diversity could not be explained by stochastic processes, and did not coincide with changes in the rearing conditions. Furthermore, the larval microbiota was highly distinct from the water and the live feed microbiota, particularly at early developmental stages. However, the similarity between larval and water microbiota increased with age. This study suggests that strong selection in the host structures the cod larval microbiota. The changes in community structure observed with increasing age can be explained by altered selection pressure due to development of the intestinal system. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

New records of larval stages of the eel cod genus Muraenolepis Günther 1880 (Gadiformes: Muraenolepididae) from the western Antarctic Peninsula.

PubMed

Konstantinidis, P; Hilton, E J; Matarese, A C

2016-08-01

Three newly discovered larval specimens of the genus Muraenolepis collected from the waters of the western Antarctic Peninsula are described. Knowledge of their natural history is sparse and information about their early life history is based on only a few larval stages. Here, the available literature on larval eel cods is reviewed, and the specimens placed in context. © 2016 The Fisheries Society of the British Isles.

Effect of climate change on marine ecosystems

NASA Astrophysics Data System (ADS)

Vikebo, F. B.; Sundby, S.; Aadlandsvik, B.; Fiksen, O.

2003-04-01

As a part of the INTEGRATION project, headed by Potsdam Institute for Climate Impact Research, funded by the German Research Council, the impact of climate change scenarios on marine fish populations will be addressed on a spesific population basis and will focus on fish populations in the northern North Atlantic with special emphasis on cod. The approach taken will mainly be a modelling study supported by analysis of existing data on fish stocks and climate. Through down-scaling and nesting techniques, various climate change scenarios with reduced THC in the North Atlantic will be investigated with higher spatial resolution for selected shelf areas. The hydrodynamical model used for the regional ocean modeling is ROMS (http://marine.rutgers.edu/po/models/roms/). An individual based model will be implemented into the larval drift module to simulate growth of the larvae along the drift paths.

Forecasting future recruitment success for Atlantic cod in the warming and acidifying Barents Sea.

PubMed

Koenigstein, Stefan; Dahlke, Flemming T; Stiasny, Martina H; Storch, Daniela; Clemmesen, Catriona; Pörtner, Hans-Otto

2018-01-01

Productivity of marine fish stocks is known to be affected by environmental and ecological drivers, and global climate change is anticipated to alter recruitment success of many stocks. While the direct effects of environmental drivers on fish early life stage survival can be quantified experimentally, indirect effects in marine ecosystems and the role of adaptation are still highly uncertain. We developed an integrative model for the effects of ocean warming and acidification on the early life stages of Atlantic cod in the Barents Sea, termed SCREI (Simulator of Cod Recruitment under Environmental Influences). Experimental results on temperature and CO 2 effects on egg fertilization, egg and larval survival and development times are incorporated. Calibration using empirical time series of egg production, temperature, food and predator abundance reproduces age-0 recruitment over three decades. We project trajectories of recruitment success under different scenarios and quantify confidence limits based on variation in experiments. A publicly accessible web version of the SCREI model can be run under www.oceanchange.uni-bremen.de/;SCREI. Severe reductions in average age-0 recruitment success of Barents Sea cod are projected under uncompensated warming and acidification toward the middle to end of this century. Although high population stochasticity was found, considerable rates of evolutionary adaptation to acidification and shifts in organismal thermal windows would be needed to buffer impacts on recruitment. While increases in food availability may mitigate short-term impacts, an increase in egg production achieved by stock management could provide more long-term safety for cod recruitment success. The SCREI model provides a novel integration of multiple driver effects in different life stages and enables an estimation of uncertainty associated with interindividual and ecological variation. The model thus helps to advance toward an improved empirical foundation for quantifying climate change impacts on marine fish recruitment, relevant for ecosystem-based assessments of marine systems under climate change. © 2017 John Wiley & Sons Ltd.

Preferred temperature of juvenile Atlantic cod Gadus morhua with different haemoglobin genotypes at normoxia and moderate hypoxia.

PubMed

Petersen, Maria Faldborg; Steffensen, John Fleng

2003-01-01

Atlantic cod Gadus morhua has polymorphic haemoglobin, which can be separated into two homozygous types, HbI-1 and HbI-2, and one heterozygous type HbI-1/2. The geographical distribution of Atlantic cod with the different haemoglobin types varies, with the HbI(2) allele occurring at high frequency in northern regions, and the HbI(1) allele dominant in warmer areas. To determine if temperature is a selective parameter in the distribution of the haemoglobin types, the preferred temperature of the homozygous genotypes HbI-1 and HbI-2 was measured. We found that HbI-2 cod preferred a temperature of 8.2+/-1.5 degrees C while HbI-1 cod preferred 15.4+/-1.1 degrees C, and this preference was significant. The effect of hypoxia (35% oxygen saturation) on the preferred temperature was also measured. Previous studies showed that the preferred temperature of fish decreases during hypoxia, and this was the case for HbI-1 cod, which preferred 9.8+/-1.8 degrees C during hypoxia, whereas HbI-2 cod did not show this effect. The results indicate that environmental temperature changes will lead to a distributional change in the different haemoglobin types of Atlantic cod, global warming providing an advantage for HbI-1 cod. However, since HbI-1 cod prefer a low temperature under hypoxic conditions, a combination of increased water temperature and hypoxia could be unfavourable for Atlantic cod stocks.

Mitochondrial acclimation potential to ocean acidification and warming of Polar cod (Boreogadus saida) and Atlantic cod (Gadus morhua).

PubMed

Leo, Elettra; Kunz, Kristina L; Schmidt, Matthias; Storch, Daniela; Pörtner, Hans-O; Mark, Felix C

2017-01-01

Ocean acidification and warming are happening fast in the Arctic but little is known about the effects of ocean acidification and warming on the physiological performance and survival of Arctic fish. In this study we investigated the metabolic background of performance through analyses of cardiac mitochondrial function in response to control and elevated water temperatures and P CO 2 of two gadoid fish species, Polar cod ( Boreogadus saida ), an endemic Arctic species, and Atlantic cod ( Gadus morhua ), which is a temperate to cold eurytherm and currently expanding into Arctic waters in the wake of ocean warming. We studied their responses to the above-mentioned drivers and their acclimation potential through analysing the cardiac mitochondrial function in permeabilised cardiac muscle fibres after 4 months of incubation at different temperatures (Polar cod: 0, 3, 6, 8 °C and Atlantic cod: 3, 8, 12, 16 °C), combined with exposure to present (400μatm) and year 2100 (1170μatm) levels of CO 2 . OXPHOS, proton leak and ATP production efficiency in Polar cod were similar in the groups acclimated at 400μatm and 1170μatm of CO 2 , while incubation at 8 °C evoked increased proton leak resulting in decreased ATP production efficiency and decreased Complex IV capacity. In contrast, OXPHOS of Atlantic cod increased with temperature without compromising the ATP production efficiency, whereas the combination of high temperature and high P CO 2 depressed OXPHOS and ATP production efficiency. Polar cod mitochondrial efficiency decreased at 8 °C while Atlantic cod mitochondria were more resilient to elevated temperature; however, this resilience was constrained by high P CO 2 . In line with its lower habitat temperature and higher degree of stenothermy, Polar cod has a lower acclimation potential to warming than Atlantic cod.

Effects of light conditions and temperature gradients on vertical migration behavior of larval Arctic cod (Boreogadus saida) and walleye pollock (Gadus chalcogramma)

NASA Astrophysics Data System (ADS)

Flanders, K. R.; Laurel, B.

2016-02-01

Early life stages of marine fishes must maximize growth while minimizing vulnerability to predators. Larval stages in particular are subject to ocean currents, but encounter favorable habitats by adjusting their vertical position in the water column. The investigation of environmental cues that change larval fish behavior is therefore crucial to understanding larval drift and dispersal modeling, and subsequently population structure and connectivity. In this study, the behavioral responses of larval Arctic cod (Boreogadus saida) and walleye pollock (Gadus chalcogramma) in a vertical water column were examined. Two prominent environmental variables, light and temperature, were manipulated over 3 h during observational trials. Light intensity was studied at two levels (1.484 x 101 μE m-2 s-1 ; 2.54 x102 μE m-2 s-1), and a diel effect was studied through the removal of light after 2 h. Light intensity did not significantly impact the position of either species in a vertical water column. However, a significant difference by species was apparent when all light levels were considered: the mean position of Arctic cod was closer to the surface of the water than that of walleye pollock. The effect of temperature through the introduction of a thermocline (range 5.6°C - 1.5°C) was limited to walleye pollock given the Arctic cod larvae were surface oriented across all light treatments. However, the thermocline did not significantly impact the relative change in position from light to dark in walleye pollock, likely because they were also surface oriented in control treatments. These results could be incorporated into future larval dispersal and survival models, particularly in Alaskan and Arctic waters, to investigate changes in species distributions resulting from global warming impacts. These results also indicate population structures of Arctic cod and walleye pollock could be affected, which may be reflected in ecosystem and trophic interactions. Because Arctic cod larvae were found to be significantly surface-oriented, rising sea surface temperatures pose a considerable threat while walleye pollock could continue territorial expansion northward.

Copepods enhance nutritional status, growth and development in Atlantic cod (Gadus morhua L.) larvae — can we identify the underlying factors?

PubMed Central

van der Meeren, Terje; Rønnestad, Ivar; Mangor-Jensen, Anders; Galloway, Trina F.; Kjørsvik, Elin; Hamre, Kristin

2015-01-01

The current commercial production protocols for Atlantic cod depend on enriched rotifers and Artemia during first-feeding, but development and growth remain inferior to fish fed natural zooplankton. Two experiments were conducted in order to identify the underlying factors for this phenomenon. In the first experiment (Exp-1), groups of cod larvae were fed either (a) natural zooplankton, mainly copepods, increasing the size of prey as the larvae grew or (b) enriched rotifers followed by Artemia (the intensive group). In the second experiment (Exp-2), two groups of larvae were fed as in Exp-1, while a third group was fed copepod nauplii (approximately the size of rotifers) throughout the larval stage. In both experiments, growth was not significantly different between the groups during the first three weeks after hatching, but from the last part of the rotifer feeding period and onwards, the growth of the larvae fed copepods was higher than that of the intensive group. In Exp-2, the growth was similar between the two copepod groups during the expeimental period, indicating that nutrient composition, not prey size caused the better growth on copepods. Analyses of the prey showed that total fatty acid composition and the ratio of phospholipids to total lipids was slightly different in the prey organisms, and that protein, taurine, astaxanthin and zinc were lower on a dry weight basis in rotifers than in copepods. Other measured nutrients as DHA, all analysed vitamins, manganese, copper and selenium were similar or higher in the rotifers. When compared to the present knowledge on nutrient requirements, protein and taurine appeared to be the most likely limiting nutrients for growth in cod larvae fed rotifers and Artemia. Larvae fed rotifers/Artemia had a higher whole body lipid content than larvae fed copepods at the end of the experiment (stage 5) after the fish had been fed the same formulated diet for approximately 2 weeks. PMID:26038712

Low plastic ingestion rate in Atlantic cod (Gadus morhua) from Newfoundland destined for human consumption collected through citizen science methods.

PubMed

Liboiron, Max; Liboiron, France; Wells, Emily; Richárd, Natalie; Zahara, Alexander; Mather, Charles; Bradshaw, Hillary; Murichi, Judyannet

2016-12-15

Marine microplastics are a contaminant of concern because their small size allows ingestion by a wide range of marine life. Using citizen science during the Newfoundland recreational cod fishery, we sampled 205 Atlantic cod (Gadus morhua) destined for human consumption and found that 5 had eaten plastic, an ingestion prevalence rate of 2.4%. This ingestion rate for Atlantic cod is the second lowest recorded rate in the reviewed published literature (the lowest is 1.4%), and the lowest for any fish in the North Atlantic. This is the first report for plastic ingestion in fish in Newfoundland, Canada, a province dependent on fish for sustenance and livelihoods. Copyright © 2016 Elsevier Ltd. All rights reserved.

Cod Collapse and the Climate in the North Atlantic

NASA Astrophysics Data System (ADS)

Meng, K. C.; Oremus, K. L.; Gaines, S.

2014-12-01

Effective fisheries management requires forecasting population changes. We find a negative relationship between the North Atlantic Oscillation (NAO) index and subsequently surveyed biomass and catch of Atlantic cod, Gadus morhua, off the New England coast. A 1-unit NAO increase is associated with a 17% decrease in surveyed biomass of age-1 cod the following year. This relationship persists as the cod mature, such that observed NAO can be used to forecast future adult biomass. We also document that an NAO event lowers catch for up to 15 years afterward. In contrast to forecasts by existing stock assessment models, our NAO-driven statistical model successfully hindcasts the recent collapse of New England cod fisheries following strong NAO events in 2007 and 2008 (see figure). This finding can serve as a template for forecasting other fisheries affected by climatic conditions.

50 CFR 648.81 - NE multispecies closed areas and measures to protect EFH.

Code of Federal Regulations, 2012 CFR

2012-10-01

... designed and used to take surfclams or ocean quahogs, provided that there is no retention of regulated...′ 70°00′ 1 Cape Cod shoreline on the Atlantic Ocean. (ii) Rolling Closure Area II. From April 1 through... Cape Cod Bay. 3 Cape Cod shoreline on the Atlantic Ocean. 4 New Hampshire shoreline. (iii) Rolling...

50 CFR 648.81 - NE multispecies closed areas and measures to protect EFH.

Code of Federal Regulations, 2014 CFR

2014-10-01

... designed and used to take surfclams or ocean quahogs, provided that there is no retention of regulated...′ 70°00′ 1 Cape Cod shoreline on the Atlantic Ocean. (ii) Rolling Closure Area II. From April 1 through... Cape Cod Bay. 3 Cape Cod shoreline on the Atlantic Ocean. 4 New Hampshire shoreline. (iii) Rolling...

50 CFR 648.81 - NE multispecies closed areas and measures to protect EFH.

Code of Federal Regulations, 2013 CFR

2013-10-01

... designed and used to take surfclams or ocean quahogs, provided that there is no retention of regulated...′ 70°00′ 1 Cape Cod shoreline on the Atlantic Ocean. (ii) Rolling Closure Area II. From April 1 through... Cape Cod Bay. 3 Cape Cod shoreline on the Atlantic Ocean. 4 New Hampshire shoreline. (iii) Rolling...

Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci

PubMed Central

2011-01-01

Background The two homologous iron-binding lobes of transferrins are thought to have evolved by gene duplication of an ancestral monolobal form, but any conserved synteny between bilobal and monolobal transferrin loci remains unexplored. The important role played by transferrin in the resistance to invading pathogens makes this polymorphic gene a highly valuable candidate for studying adaptive divergence among local populations. Results The Atlantic cod genome was shown to harbour two tandem duplicated serum transferrin genes (Tf1, Tf2), a melanotransferrin gene (MTf), and a monolobal transferrin gene (Omp). Whereas Tf1 and Tf2 were differentially expressed in liver and brain, the Omp transcript was restricted to the otoliths. Fish, chicken and mammals showed highly conserved syntenic regions in which monolobal and bilobal transferrins reside, but contrasting with tetrapods, the fish transferrin genes are positioned on three different linkage groups. Sequence alignment of cod Tf1 cDNAs from Northeast (NE) and Northwest (NW) Atlantic populations revealed 22 single nucleotide polymorphisms (SNP) causing the replacement of 16 amino acids, including eight surface residues revealed by the modelled 3D-structures, that might influence the binding of pathogens for removal of iron. SNP analysis of a total of 375 individuals from 14 trans-Atlantic populations showed that the Tf1-NE variant was almost fixed in the Baltic cod and predominated in the other NE Atlantic populations, whereas the NW Atlantic populations were more heterozygous and showed high frequencies of the Tf-NW SNP alleles. Conclusions The highly conserved synteny between fish and tetrapod transferrin loci infers that the fusion of tandem duplicated Omp-like genes gave rise to the modern transferrins. The multiple nonsynonymous substitutions in cod Tf1 with putative structural effects, together with highly divergent allele frequencies among different cod populations, strongly suggest evidence for positive selection and local adaptation in trans-Atlantic cod populations. PMID:21612617

Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua)--conserved synteny between fish monolobal and tetrapod bilobal transferrin loci.

PubMed

Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave; Petersen, Petra E; André, Carl

2011-05-25

The two homologous iron-binding lobes of transferrins are thought to have evolved by gene duplication of an ancestral monolobal form, but any conserved synteny between bilobal and monolobal transferrin loci remains unexplored. The important role played by transferrin in the resistance to invading pathogens makes this polymorphic gene a highly valuable candidate for studying adaptive divergence among local populations. The Atlantic cod genome was shown to harbour two tandem duplicated serum transferrin genes (Tf1, Tf2), a melanotransferrin gene (MTf), and a monolobal transferrin gene (Omp). Whereas Tf1 and Tf2 were differentially expressed in liver and brain, the Omp transcript was restricted to the otoliths. Fish, chicken and mammals showed highly conserved syntenic regions in which monolobal and bilobal transferrins reside, but contrasting with tetrapods, the fish transferrin genes are positioned on three different linkage groups. Sequence alignment of cod Tf1 cDNAs from Northeast (NE) and Northwest (NW) Atlantic populations revealed 22 single nucleotide polymorphisms (SNP) causing the replacement of 16 amino acids, including eight surface residues revealed by the modelled 3D-structures, that might influence the binding of pathogens for removal of iron. SNP analysis of a total of 375 individuals from 14 trans-Atlantic populations showed that the Tf1-NE variant was almost fixed in the Baltic cod and predominated in the other NE Atlantic populations, whereas the NW Atlantic populations were more heterozygous and showed high frequencies of the Tf-NW SNP alleles. The highly conserved synteny between fish and tetrapod transferrin loci infers that the fusion of tandem duplicated Omp-like genes gave rise to the modern transferrins. The multiple nonsynonymous substitutions in cod Tf1 with putative structural effects, together with highly divergent allele frequencies among different cod populations, strongly suggest evidence for positive selection and local adaptation in trans-Atlantic cod populations.

Characterization of Atlantic cod spawning habitat and behavior in Icelandic coastal waters

USGS Publications Warehouse

Grabowski, Timothy B.; Boswell, Kevin M.; McAdam, Bruce J.; Wells, R. J. David; Marteinsdóttir, Gudrún

2012-01-01

The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15–16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1–5 m into the water column from the bottom at an average vertical swimming speed of 0.20–0.25 m s−1 and maintained an average spacing of 1.0–1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor.

Characterization of Atlantic Cod Spawning Habitat and Behavior in Icelandic Coastal Waters

PubMed Central

Grabowski, Timothy B.; Boswell, Kevin M.; McAdam, Bruce J.; Wells, R. J. David; Marteinsdóttir, Guđrún

2012-01-01

The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15–16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1–5 m into the water column from the bottom at an average vertical swimming speed of 0.20–0.25 m s−1 and maintained an average spacing of 1.0–1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor. PMID:23236471

Genomic analysis of the host response to nervous necrosis virus in Atlantic cod (Gadus morhua) brain.

PubMed

Krasnov, Aleksei; Kileng, Øyvind; Skugor, Stanko; Jørgensen, Sven Martin; Afanasyev, Sergey; Timmerhaus, Gerrit; Sommer, Ann-Inger; Jensen, Ingvill

2013-07-01

Genome sequencing combined with transcriptome profiling promotes exploration of defence against pathogens and discovery of immune genes. Based on sequences from the recently released genome of Atlantic cod, a genome-wide oligonucleotide microarray (ACIQ-1) was designed and used for analyses of gene expression in the brain during infection with nervous necrosis virus (NNV). A challenge experiment with NNV was performed with Atlantic cod juveniles and brain samples from virus infected and uninfected fish were used for microarray analysis. Expression of virus induced genes increased at 5 days post challenge and persisted at stable level to the last sampling at 25 days post challenge. A large fraction of the up-regulated genes (546 features) were known or expected to have immune functions and most of these have not previously been characterized in Atlantic cod. Transcriptomic changes induced by the virus involved strong activation of genes associated with interferon and tumour necrosis factor related responses and acute inflammation. Up-regulation of genes involved in adaptive immunity suggested a rapid recruitment of B and T lymphocytes to the NNV infected brain. QPCR analyses of 15 candidate genes of innate immunity showed rapid induction by poly(I:C) in Atlantic cod larvae cells suggesting an antiviral role. Earliest and greatest expression changes after poly I:C stimulation was observed for interferon regulatory factors IRF4 and IRF7. Comparative studies between teleost species provided new knowledge about the evolution of innate antiviral immunity in fish. A number of genes is present or responds to viruses only in fish. Innate immunity of Atlantic cod is characterized by selective expansion of several medium-sized multigene families with ribose binding domains. An interesting finding was the high representation of three large gene families among the early antiviral genes, including tripartite motif proteins (TRIM) and proteins with PRY-SPRY and NACHT domains. The latter two with respectively 52 and 114 members in Atlantic cod have gone through expansions in different groups of fish. These proteins most likely have ligand binding properties and their propagation could be linked to the loss of MHC class II in the Atlantic cod genome. Copyright © 2013 Elsevier Ltd. All rights reserved.

Evidence for a regulatory loop between cholecystokinin (CCK) and tryptic enzyme activity in Atlantic cod larvae (Gadus morhua).

PubMed

Tillner, Robert; Rønnestad, Ivar; Harboe, Torstein; Ueberschär, Bernd

2013-11-01

In order to maximize protein digestion, the release of enzymes into the gut lumen is closely controlled by a regulatory loop. Cholecystokinin (CCK) is among the enteric hormones that play a key role in the control of digestive enzyme secretion, but its role in first-feeding larvae is still unclear and may differ between species. However, in all marine fish larvae that have not developed a stomach by first-feeding, trypsin is the most important proteolytic enzyme. In order to examine the regulation and feedback mechanisms in the gut of larval cod, we therefore studied the interactions between cholecystokinin and tryptic enzyme activity following the administration of solutions containing test substances directly into the gut. We tube-fed a single dose of physiological saline solution containing either CCK, CCK antagonist, trypsin inhibitor, phytohemagglutinin (PHA; a possible trigger for the digestive response) or physiological saline alone, while a further control group was left untreated. We then followed the response in CCK and tryptic enzyme activity for 0.5-8h after the administration. We performed the experiment on larvae at 26day post first-feeding, which is before the stomach has evolved and the size of the larvae allows easier handling. Individual larvae were analyzed for CCK and tryptic enzyme activity using radioimmunoassay and fluorimetric techniques respectively. Both factors varied over time in the untreated control group, possibly due to an endogenous daily rhythm. The higher CCK levels at 4h and 8h in the saline-injected group may be caused by reflexes initiated by distension of the gut. An increase in tryptic enzyme activity after injection of CCK supports the hypothesis that this hormone plays a part in the release of pancreatic enzymes in larval cod at this developmental stage. However, administration of a CCK antagonist and a trypsin inhibitor did not reveal conclusive results, probably due to the relatively low concentrations used. The response in tryptic activity in the PHA group was similar to the administration of CCK, pointing towards a stimulatory effect of PHA on the proteolytic enzyme capacity of cod larvae. © 2013.

Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics

PubMed Central

Bigg, Grant R; Cunningham, Clifford W; Ottersen, Geir; Pogson, Grant H; Wadley, Martin R; Williamson, Phillip

2007-01-01

Scant scientific attention has been given to the abundance and distribution of marine biota in the face of the lower sea level, and steeper latitudinal gradient in climate, during the ice-age conditions that have dominated the past million years. Here we examine the glacial persistence of Atlantic cod (Gadus morhua) populations using two ecological-niche-models (ENM) and the first broad synthesis of multi-locus gene sequence data for this species. One ENM uses a maximum entropy approach (Maxent); the other is a new ENM for Atlantic cod, using ecophysiological parameters based on observed reproductive events rather than adult distribution. Both the ENMs were tested for present-day conditions, then used to hindcast ranges at the last glacial maximum (LGM) ca 21 kyr ago, employing climate model data. Although the LGM range of Atlantic cod was much smaller, and fragmented, both the ENMs agreed that populations should have been able to persist in suitable habitat on both sides of the Atlantic. The genetic results showed a degree of trans-Atlantic divergence consistent with genealogically continuous populations on both sides of the North Atlantic since long before the LGM, confirming the ENM results. In contrast, both the ENMs and the genetic data suggest that the Greenland G. morhua population post-dates the LGM. PMID:17999951

Residency, site fidelity and habitat use of Atlantic cod (Gadus morhua) at an offshore wind farm using acoustic telemetry.

PubMed

Reubens, Jan T; Pasotti, Francesca; Degraer, Steven; Vincx, Magda

2013-09-01

Because offshore wind energy development is fast growing in Europe it is important to investigate the changes in the marine environment and how these may influence local biodiversity and ecosystem functioning. One of the species affected by these ecosystem changes is Atlantic cod (Gadus morhua), a heavily exploited, commercially important fish species. In this research we investigated the residency, site fidelity and habitat use of Atlantic cod on a temporal scale at windmill artificial reefs in the Belgian part of the North Sea. Acoustic telemetry was used and the Vemco VR2W position system was deployed to quantify the movement behaviour. In total, 22 Atlantic cod were tagged and monitored for up to one year. Many fish were present near the artificial reefs during summer and autumn, and demonstrated strong residency and high individual detection rates. When present within the study area, Atlantic cod also showed distinct habitat selectivity. We identified aggregation near the artificial hard substrates of the wind turbines. In addition, a clear seasonal pattern in presence was observed. The high number of fish present in summer and autumn alternated with a period of very low densities during the winter period. Copyright © 2013 Elsevier Ltd. All rights reserved.

A review of the contributions of fisheries and climate variability to contrasting dynamics in two Arcto-boreal Atlantic cod (Gadus morhua) stocks: Persistent high productivity in the Barents Sea and collapse on the Newfoundland and Labrador Shelf

NASA Astrophysics Data System (ADS)

Lilly, George R.; Nakken, Odd; Brattey, John

2013-07-01

Stocks of Atlantic cod (Gadus morhua) across the North Atlantic and adjacent seas have been fished intensively for years, and many are now severely depleted. In order to promote recovery and sustainable harvesting, it is essential to understand factors that have contributed to the declines and to variability in rates of recovery. Considerable insight may be gleaned by comparing and contrasting the histories of the Northeast Arctic (NEA) cod in the Barents Sea - Svalbard area of the northeast Atlantic and the “northern cod” on the Newfoundland and Labrador (NL) shelf in the northwest Atlantic. These two stocks, which were among the 3 largest cod stocks during the middle of the 20th century, are Arcto-boreal, and have many species of prey and predators in common. The biomass of NEA cod has varied considerably over time, and in 2009 was a little above 60% of its maximum observed level, which occurred in the late 1940s and early 1950s. In contrast, the biomass of NL cod decreased steadily from the early 1960s to the late 1970s, increased somewhat during the 1980s, and crashed during the early 1990s to an extremely low level, at which it remained for a decade before showing recent indications of improvement. Although both stocks were influenced by similar changes in harvesting strategies and environmental circumstances, both biotic and abiotic, there are two events which stand out as being particularly influential. First, crises developed in the management of both stocks in the late 1980s. For NEA cod, the crisis was environmental, caused by the collapse of capelin (Mallotus villosus), the main food for adult cod, whereas for NL cod the crisis was caused by a sudden large reduction in scientific perception of stock size. The difference in response to these crises strongly influenced subsequent stock dynamics. Catches of NEA cod were reduced considerably, preventing severe overharvesting of the cod that at that time experienced low productivity, whereas catches of NL cod were reduced only a little, contributing to escalating fishing mortality. The second event followed directly upon the first. The North Atlantic Oscillation index, which had been increasingly positive since the early 1970s, became strongly so during the early 1990s, creating favourable environmental conditions (warm water) in the Barents Sea and highly unfavourable conditions (cold water and extensive ice cover) on the Newfoundland-Labrador Shelf. The NEA stock recovered quickly, whereas the NL stock collapsed. The NEA cod has remained highly productive to this date, whereas the NL cod remained very unproductive for a decade, primarily because of high mortality, most of which appears to have been natural.

Model-supported estimation of mortality rates in Baltic cod (Gadus morhua callarias L.) larvae: the varying impact of 'critical periods'

PubMed Central

Voss, Rüdiger; Hinrichsen, Hans-Harald; Wieland, Kai

2001-01-01

Background Changes in the survival-rate during the larval phase may strongly influence the recruitment level in marine fish species. During the larval phase different 'critical periods' are discussed, e.g. the hatching period and the first-feeding period. No such information was available for the Baltic cod stock, a commercially important stock showing reproduction failure during the last years. We calculated field-based mortality rates for larval Baltic cod during these phases using basin-wide abundance estimates from two consecutive surveys. Survey information was corrected by three dimensional hydrodynamic model runs. Results The corrections applied for transport were of variable impact, depending on the prevailing circulation patterns. Especially at high wind forcing scenarios, abundance estimates have the potential to be biased without accounting for transport processes. In May 1988 mortality between hatch and first feeding amounted to approximately 20% per day. Mortality rates during the onset of feeding were considerably lower with only 7% per day. In August 1991 the situation was vice versa: Extremely low mortality rates of 0.08% per day were calculated between hatch and first feeding, while the period between the onset of feeding to the state of an established feeder was more critical with mortality rates of 22% per day. Conclusions Mortality rates during the different proposed 'critical periods' were found to be highly variable. Survival rates of Baltic cod are not only influenced by a single 'critical period', but can be limited at different points during the larval phase, depending on several biotic and abiotic factors. PMID:11737879

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.)

PubMed Central

Berg, Paul R.; Jentoft, Sissel; Star, Bastiaan; Ring, Kristoffer H.; Knutsen, Halvor; Lien, Sigbjørn; Jakobsen, Kjetill S.; André, Carl

2015-01-01

How genomic selection enables species to adapt to divergent environments is a fundamental question in ecology and evolution. We investigated the genomic signatures of local adaptation in Atlantic cod (Gadus morhua L.) along a natural salinity gradient, ranging from 35‰ in the North Sea to 7‰ within the Baltic Sea. By utilizing a 12 K SNPchip, we simultaneously assessed neutral and adaptive genetic divergence across the Atlantic cod genome. Combining outlier analyses with a landscape genomic approach, we identified a set of directionally selected loci that are strongly correlated with habitat differences in salinity, oxygen, and temperature. Our results show that discrete regions within the Atlantic cod genome are subject to directional selection and associated with adaptation to the local environmental conditions in the Baltic- and the North Sea, indicating divergence hitchhiking and the presence of genomic islands of divergence. We report a suite of outlier single nucleotide polymorphisms within or closely located to genes associated with osmoregulation, as well as genes known to play important roles in the hydration and development of oocytes. These genes are likely to have key functions within a general osmoregulatory framework and are important for the survival of eggs and larvae, contributing to the buildup of reproductive isolation between the low-salinity adapted Baltic cod and the adjacent cod populations. Hence, our data suggest that adaptive responses to the environmental conditions in the Baltic Sea may contribute to a strong and effective reproductive barrier, and that Baltic cod can be viewed as an example of ongoing speciation. PMID:25994933

Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod.

PubMed

Berg, Paul R; Star, Bastiaan; Pampoulie, Christophe; Sodeland, Marte; Barth, Julia M I; Knutsen, Halvor; Jakobsen, Kjetill S; Jentoft, Sissel

2016-03-17

Identification of genome-wide patterns of divergence provides insight on how genomes are influenced by selection and can reveal the potential for local adaptation in spatially structured populations. In Atlantic cod - historically a major marine resource - Northeast-Arctic- and Norwegian coastal cod are recognized by fundamental differences in migratory and non-migratory behavior, respectively. However, the genomic architecture underlying such behavioral ecotypes is unclear. Here, we have analyzed more than 8.000 polymorphic SNPs distributed throughout all 23 linkage groups and show that loci putatively under selection are localized within three distinct genomic regions, each of several megabases long, covering approximately 4% of the Atlantic cod genome. These regions likely represent genomic inversions. The frequency of these distinct regions differ markedly between the ecotypes, spawning in the vicinity of each other, which contrasts with the low level of divergence in the rest of the genome. The observed patterns strongly suggest that these chromosomal rearrangements are instrumental in local adaptation and separation of Atlantic cod populations, leaving footprints of large genomic regions under selection. Our findings demonstrate the power of using genomic information in further understanding the population dynamics and defining management units in one of the world's most economically important marine resources.

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.

PubMed

Tørresen, Ole K; Star, Bastiaan; Jentoft, Sissel; Reinar, William B; Grove, Harald; Miller, Jason R; Walenz, Brian P; Knight, James; Ekholm, Jenny M; Peluso, Paul; Edvardsen, Rolf B; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill S; Nederbragt, Alexander J

2017-01-18

The first Atlantic cod (Gadus morhua) genome assembly published in 2011 was one of the early genome assemblies exclusively based on high-throughput 454 pyrosequencing. Since then, rapid advances in sequencing technologies have led to a multitude of assemblies generated for complex genomes, although many of these are of a fragmented nature with a significant fraction of bases in gaps. The development of long-read sequencing and improved software now enable the generation of more contiguous genome assemblies. By combining data from Illumina, 454 and the longer PacBio sequencing technologies, as well as integrating the results of multiple assembly programs, we have created a substantially improved version of the Atlantic cod genome assembly. The sequence contiguity of this assembly is increased fifty-fold and the proportion of gap-bases has been reduced fifteen-fold. Compared to other vertebrates, the assembly contains an unusual high density of tandem repeats (TRs). Indeed, retrospective analyses reveal that gaps in the first genome assembly were largely associated with these TRs. We show that 21% of the TRs across the assembly, 19% in the promoter regions and 12% in the coding sequences are heterozygous in the sequenced individual. The inclusion of PacBio reads combined with the use of multiple assembly programs drastically improved the Atlantic cod genome assembly by successfully resolving long TRs. The high frequency of heterozygous TRs within or in the vicinity of genes in the genome indicate a considerable standing genomic variation in Atlantic cod populations, which is likely of evolutionary importance.

Precision-cut liver slices of Atlantic cod (Gadus morhua): an in vitro system for studying the effects of environmental contaminants.

PubMed

Eide, M; Karlsen, O A; Kryvi, H; Olsvik, P A; Goksøyr, A

2014-08-01

The Atlantic cod (Gadus morhua) is an economically important species commonly consumed by humans. The widespread distribution of cod in the North Atlantic Ocean makes it vulnerable to effluents from human activities, such as coastal industries and offshore petroleum exploration. It has been demonstrated that many effluents have adverse effects on cod reproduction and health, e.g. by disrupting endocrine signaling pathways. The liver, expressing important components of the biotransformation and the endocrine system, is one of the main target organs. Thus, reliable and reproducible in vitro systems of the liver are important for studying effects of environmental contaminants. The aim of this study was to investigate precision-cut liver slices (PCLS) as an alternative in vitro system for toxicological studies of the Atlantic cod liver. Slices of 8 mm in diameter and 250 μm thickness were prepared and cultivated from immature cod. Several analyses to measure the liver slice viability were performed: enzyme assays, histology, and morphometric analysis, all confirming cell viability for up to 72 h in culture. The liver slices were also exposed to two well-known model environmental contaminants, β-naphthoflavone (BNF) and 17α-ethynylestradiol (EE2), representing established agonists for the aryl hydrocarbon receptor (AHR) and the estrogen receptor (ER), respectively. The results showed increased transcription of the target genes cytochrome P450 1A (CYP1A) and vitellogenin (VTG), both well-established biomarkers for exposure of fish to the selected compounds. In conclusion, PCLS is a promising in vitro system for toxicological studies of cod liver cells. The liver slices are viable in culture for several days and respond to environmental contaminants in a dose- and time-specific manner. Copyright © 2013 Elsevier B.V. All rights reserved.

Modeling larval connectivity of the Atlantic surfclams within the Middle Atlantic Bight: Model development, larval dispersal and metapopulation connectivity

NASA Astrophysics Data System (ADS)

Zhang, Xinzhong; Haidvogel, Dale; Munroe, Daphne; Powell, Eric N.; Klinck, John; Mann, Roger; Castruccio, Frederic S.

2015-02-01

To study the primary larval transport pathways and inter-population connectivity patterns of the Atlantic surfclam, Spisula solidissima, a coupled modeling system combining a physical circulation model of the Middle Atlantic Bight (MAB), Georges Bank (GBK) and the Gulf of Maine (GoM), and an individual-based surfclam larval model was implemented, validated and applied. Model validation shows that the model can reproduce the observed physical circulation patterns and surface and bottom water temperature, and recreates the observed distributions of surfclam larvae during upwelling and downwelling events. The model results show a typical along-shore connectivity pattern from the northeast to the southwest among the surfclam populations distributed from Georges Bank west and south along the MAB shelf. Continuous surfclam larval input into regions off Delmarva (DMV) and New Jersey (NJ) suggests that insufficient larval supply is unlikely to be the factor causing the failure of the population to recover after the observed decline of the surfclam populations in DMV and NJ from 1997 to 2005. The GBK surfclam population is relatively more isolated than populations to the west and south in the MAB; model results suggest substantial inter-population connectivity from southern New England to the Delmarva region. Simulated surfclam larvae generally drift for over one hundred kilometers along the shelf, but the distance traveled is highly variable in space and over time. Surfclam larval growth and transport are strongly impacted by the physical environment. This suggests the need to further examine how the interaction between environment, behavior, and physiology affects inter-population connectivity. Larval vertical swimming and sinking behaviors have a significant net effect of increasing larval drifting distances when compared with a purely passive model, confirming the need to include larval behavior.

Variation in spawning time promotes genetic variability in population responses to environmental change in a marine fish

PubMed Central

Hutchings, Jeffrey A

2015-01-01

Abstract The level of phenotypic plasticity displayed within a population (i.e. the slope of the reaction norm) reflects the short-term response of a population to environmental change, while variation in reaction norm slopes among populations reflects spatial variation in these responses. Thus far, studies of thermal reaction norm variation have focused on geographically driven adaptation among different latitudes, altitudes or habitats. Yet, thermal variability is a function of both space and time. For organisms that reproduce at different times of year, such variation has the potential to promote adaptive variability in thermal responses for critical early life stages. Using common-garden experiments, we examined the spatial scale of genetic variation in thermal plasticity for early life-history traits among five populations of endangered Atlantic cod (Gadus morhua) that spawn at different times of year. Patterns of plasticity for larval growth and survival suggest that population responses to climate change will differ substantially, with increasing water temperatures posing a considerably greater threat to autumn-spawning cod than to those that spawn in winter or spring. Adaptation to seasonal cooling or warming experienced during the larval stage is suggested as a possible cause. Furthermore, populations that experience relatively cold temperatures during early life might be more sensitive to changes in temperature. Substantial divergence in adaptive traits was evident at a smaller spatial scale than has previously been shown for a marine fish with no apparent physical barriers to gene flow (∼200 km). Our findings highlight the need to consider the impact of intraspecific variation in reproductive timing on thermal adaptation when forecasting the effects of climate change on animal populations. PMID:27293712

Variation in spawning time promotes genetic variability in population responses to environmental change in a marine fish.

PubMed

Oomen, Rebekah A; Hutchings, Jeffrey A

2015-01-01

The level of phenotypic plasticity displayed within a population (i.e. the slope of the reaction norm) reflects the short-term response of a population to environmental change, while variation in reaction norm slopes among populations reflects spatial variation in these responses. Thus far, studies of thermal reaction norm variation have focused on geographically driven adaptation among different latitudes, altitudes or habitats. Yet, thermal variability is a function of both space and time. For organisms that reproduce at different times of year, such variation has the potential to promote adaptive variability in thermal responses for critical early life stages. Using common-garden experiments, we examined the spatial scale of genetic variation in thermal plasticity for early life-history traits among five populations of endangered Atlantic cod (Gadus morhua) that spawn at different times of year. Patterns of plasticity for larval growth and survival suggest that population responses to climate change will differ substantially, with increasing water temperatures posing a considerably greater threat to autumn-spawning cod than to those that spawn in winter or spring. Adaptation to seasonal cooling or warming experienced during the larval stage is suggested as a possible cause. Furthermore, populations that experience relatively cold temperatures during early life might be more sensitive to changes in temperature. Substantial divergence in adaptive traits was evident at a smaller spatial scale than has previously been shown for a marine fish with no apparent physical barriers to gene flow (∼200 km). Our findings highlight the need to consider the impact of intraspecific variation in reproductive timing on thermal adaptation when forecasting the effects of climate change on animal populations.

Comparison of the response of Atlantic cod ( Gadus morhua) in the high-latitude regions of the North Atlantic during the warm periods of the 1920s-1960s and the 1990s-2000s

NASA Astrophysics Data System (ADS)

Drinkwater, Ken

2009-10-01

Concern about future anthropogenic warming has lead to demands for information on what might happen to fish and fisheries under various climate-change scenarios. One suggestion has been to use past events as a proxy for what will happen in the future. In this paper a comparison between the responses of Atlantic cod ( Gadus morhua) to two major warm periods in the North Atlantic during the 20th century is carried out to determine how reliable the past might be as a predictor of the future. The first warm period began during the 1920s, remained relatively warm through the 1960s, and was limited primarily to the northern regions (>60°N). The second warm period, which again covered the northern regions but also extended farther south (30°N), began in the 1990s and has continued into the present century. During the earlier warm period, the most northern of the cod stocks (West Greenland, Icelandic, and Northeast Arctic cod in the Barents Sea) increased in abundance, individual growth was high, recruitment was strong, and their distribution spread northward. Available plankton data suggest that these cod responses were driven by bottom-up processes. Fishing pressure increased during this period of high cod abundance and the northern cod stocks began to decline, as early as the 1950s in the Barents Sea but during the 1960s elsewhere. Individual growth declined as temperatures cooled and the cod distributions retracted southward. During the warming in the 1990s, the spawning stock biomass of cod in the Barents Sea again increased, recruitment rose, and the stock spread northward, but the individual growth did not improve significantly. Cod off West Greenland also have shown signs of improving recruitment and increasing biomass, albeit they are still very low in comparison to the earlier warming period. The abundance of Icelandic cod, on the other hand, has remained low through the recent warm period and spawning stock biomass and total biomass are at levels near the lowest on record. The different responses of cod to the two warm events, in particular the reduced cod production during the recent warm period, are attributed to the effects of intense fishing pressure and possibly related ecosystem changes. The implications of the results of the comparisons on the development of cod scenarios under future climate change are addressed.

Genetic and morphological variation in Echinorhynchus gadi Zoega in Müller, 1776 (Acanthocephala: Echinorhynchidae) from Atlantic cod Gadus morhua L.

PubMed

Sobecka, E; Szostakowska, B; MacKenzie, K; Hemmingsen, W; Prajsnar, S; Eydal, M

2012-03-01

Previous studies have shown considerable variability in morphological features and the existence of genetically distinct sibling species in the acanthocephalan Echinorhynchus gadi Zoega in Müller, 1776. The aim of the present study was to follow up and extend those earlier studies by using a combination of DNA analysis and morphometrics to investigate differences between samples of E. gadi from Atlantic cod Gadus morhua L. caught at five fishing grounds in the Baltic Sea and three in different parts of the North Atlantic. Twelve morphological features were measured in 431 specimens of E. gadi, 99 individuals were studied by polymerase chain reaction-restriction fragment length polymorphosm (PCR-RFLP), and selected PCR products were sequenced. The molecular analyses showed the nucleotide sequences of E. gadi rDNA from cod caught at all the sampling sites to be identical. The comparative morphological study, in contrast, revealed significant differences between samples of E. gadi from different sampling sites and showed the separation of E. gadi into two groups corresponding approximately to the systematic classification of cod into the two subspecies, Atlantic G. morhua morhua and Baltic G. morhua callarias. The E. gadi infrapopulation size had a significant effect on some of the morphological features. The results are discussed in relation to cod population biology, the hydrography of the study area and the history of the Baltic Sea formation.

Evolutionary pressure on reproductive strategies in flatfish and groundfish: Relevant concepts and methodological advancements

NASA Astrophysics Data System (ADS)

Kjesbu, O. S.; Witthames, P. R.

2007-07-01

Flatfish and groundfish show many similarities in reproductive strategies and tactics, both in types present and in responses to fishing pressure or changes in their environment. Over the last 20-30 years the reproduction of Atlantic cod Gadus morhua, Atlantic halibut Hippoglossus hippoglossus, plaice Pleuronectes platessa, sole Solea solea, and turbot Scophthalmus maximus have been extensively studied in the North Atlantic. For cod, halibut and turbot, the research has progressed rapidly due to interest from the aquaculture industry. Extensive overexploitation over many years in combination with climate change represents a potential evolutionary pressure towards changes in growth, lower age at maturity, increased fecundity, smaller egg size (and thereby larval size) and change in spawning time. Early sexual maturity/precocious maturation is also seen in aquaculture and is problematic economically due to a reduction in fillet production. In this paper information is reviewed from studies on both wild and captive populations in experiments, the latter considered important because overexploitation, such as observed in the North Sea, often reduces the natural dynamics in growth and reproduction and complicates collection of sufficiently large samples. Evidence from laboratory experiments demonstrates the inherent plasticity of fecundity production and how this is controlled by food availability and length of photoperiod, while recent information from field studies demonstrates the evolution of genotypes in response to fishing mortality. Today several laboratories have adopted modern techniques for analysis of reproductive investments (fecundity, atresia and sperm characterisation) in controlled experimental situations to explore the effect of temperature or other environmental parameters (such as salinity) on reproduction. These developments, in combination with the rapid implementation of molecular techniques, should make it possible in the future to present highly precise information on reproductive potential, both at the individual and stock level. Of particular interest, and a major goal, would be to dissociate genetic and phenotypic control of reproductive traits arising from a better understanding of gene expression in captive populations.

EST resources and establishment and validation of a 16k cDNA microarray from Atlantic cod (Gadus morhua).

PubMed

Edvardsen, Rolf B; Malde, Ketil; Mittelholzer, Christian; Taranger, Geir Lasse; Nilsen, Frank

2011-03-01

The Atlantic cod, Gadus morhua, is an important species both for traditional fishery and increasingly also in fish farming. The Atlantic cod is also under potential threat from various environmental changes such as pollution and climate change, but the biological impact of such changes are not well known, in particular when it comes to sublethal effects that can be difficult to assert. Modern molecular and genomic approaches have revolutionized biological research during the last decade, and offer new avenues to study biological functions and e.g. the impact of anthropogenic activities at different life-stages for a given organism. In order to develop genomic data and genomic tools for Atlantic cod we conducted a program were we constructed 20 cDNA libraries, and produced and analyzed 44006 expressed sequence tags (ESTs) from these. Several tissues are represented in the multiple cDNA libraries, that differ in either sexual maturation or immulogical stimulation. This approach allowed us to identify genes that are expressed in particular tissues, life-stages or in response to specific stimuli, and also gives us information about potential functions of the transcripts. The ESTs were used to construct a 16k cDNA microarray to further investigate the cod transcriptome. Microarray analyses were preformed on pylorus, pituitary gland, spleen and testis of sexually maturing male cod. The four different tissues displayed tissue specific transcriptomes demonstrating that the cDNA array is working as expected and will prove to be a powerful tool in further experiments. Copyright © 2010 Elsevier Inc. All rights reserved.

The impact of a moderate chronic temperature increase on spleen immune-relevant gene transcription depends on whether Atlantic cod (Gadus morhua) are stimulated with bacterial versus viral antigens.

PubMed

Hori, Tiago S; Gamperl, A Kurt; Nash, Gord; Booman, Marije; Barat, Ashoktaru; Rise, Matthew L

2013-10-01

Exposure to elevated temperature is an inherent feature of Atlantic cod (Gadus morhua) sea-cage culture in some regions (e.g., Newfoundland) and may also become an increasingly prevalent challenge for wild fish populations because of accelerated climate change. Therefore, understanding how elevated temperatures impacts the immune response of this commercially important species may help to reduce the potential negative impacts of such challenges. Previously, we investigated the impacts of moderately elevated temperature on the antiviral responses of Atlantic cod (Hori et al. 2012) and reported that elevated temperature modulated the spleen transcriptome response to polyriboinosinic polyribocytidylic acid (pIC, a viral mimic). Herein, we report a complementary microarray study that investigated the impact of the same elevated temperature regime on the Atlantic cod spleen transcriptome response to intraperitoneal (IP) injection of formalin-killed Aeromonas salmonicida (ASAL). Fish were held at two different temperatures (10 °C and 16 °C) prior to immune stimulation and sampled 6 and 24 h post-injection (HPI). In this experiment, we identified 711 and 666 nonredundant ASAL-responsive genes at 6HPI and 24HPI, respectively. These included several known antibacterial genes, including hepcidin, cathelicidin, ferritin heavy subunit, and interleukin 8. However, we only identified 15 differentially expressed genes at 6HPI and 2 at 24HPI (FDR 1%) when comparing ASAL-injected fish held at 10 °C versus 16 °C. In contrast, the same comparisons with pIC-injected fish yielded 290 and 339 differentially expressed genes (FDR 1%) at 6HPI and 24HPI, respectively. These results suggest that moderately elevated temperature has a lesser effect on the Atlantic cod spleen transcriptome response to ASAL (i.e., the antibacterial response) than to pIC (i.e., antiviral response). Thus, the impacts of high temperatures on the cod's immune response may be pathogen dependent.

Patterns of larval source distribution and mixing in early life stages of Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea

NASA Astrophysics Data System (ADS)

Miller, Jessica A.; DiMaria, Ruth A.; Hurst, Thomas P.

2016-12-01

Effective and sustainable management depends on knowledge of spawning locations and their relative contributions to marine fish populations. Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea aggregate at discrete spawning locations but there is little information on patterns of larval dispersal and the relative contribution of specific spawning areas to nursery habitats. Age-0 Pacific cod from two cohorts (2006 and 2008) were examined to address the following questions: (1) does size, age, and otolith chemistry vary among known capture locations; (2) can variation in elemental composition of the otolith cores (early larval signatures) be used to infer the number of chemically distinct sources contributing to juvenile recruits in the Bering Sea; and (3) to what extent are juvenile collection locations represented by groups of fish with similar chemical histories throughout their early life history? Hierarchical cluster (HCA) and discriminant function analyses (DFA) were used to examine variation in otolith chemistry at discrete periods throughout the early life history. HCA identified five chemically distinct groups of larvae in the 2006 cohort and three groups in 2008; however, three sources accounted for 80-100% of the juveniles in each year. DFA of early larval signatures indicated that there were non-random spatial distributions of early larvae in both years, which may reflect interannual variation in regional oceanography. There was also a detectable and substantial level of coherence in chemical signatures within groups of fish throughout the early life history. The variation in elemental signatures throughout the early life history (hatch to capture) indicates that otolith chemical analysis could be an effective tool to further clarify larval sources and dispersal, identify juvenile nursery habitats, and estimate the contributions of juvenile nursery habitats to the adult population within the southeastern Bering Sea.

Calcium from salmon and cod bone is well absorbed in young healthy men: a double-blinded randomised crossover design.

PubMed

Malde, Marian K; Bügel, Susanne; Kristensen, Mette; Malde, Ketil; Graff, Ingvild E; Pedersen, Jan I

2010-07-20

Calcium (Ca) - fortified foods are likely to play an important role in helping the consumer achieve an adequate Ca intake, especially for persons with a low intake of dairy products. Fish bones have a high Ca content, and huge quantities of this raw material are available as a by-product from the fish industry. Previously, emphasis has been on producing high quality products from fish by-products by use of bacterial proteases. However, documentation of the nutritional value of the enzymatically rinsed Ca-rich bone fraction remains unexplored. The objective of the present study was to assess the bioavailability of calcium in bones of Atlantic salmon (oily fish) and Atlantic cod (lean fish) in a double-blinded randomised crossover design. Ca absorption was measured in 10 healthy young men using 47Ca whole body counting after ingestion of a test meal extrinsically labelled with the 47Ca isotope. The three test meals contained 800 mg of Ca from three different calcium sources: cod bones, salmon bones and control (CaCO3). Mean Ca absorption (+/- SEE) from the three different Ca sources were 21.9 +/- 1.7%, 22.5 +/- 1.7% and 27.4 +/- 1.8% for cod bones, salmon bones, and control (CaCO3), respectively. We conclude that bones from Atlantic salmon and Atlantic cod are suitable as natural Ca sources in e.g. functional foods or as supplements.

Calcium from salmon and cod bone is well absorbed in young healthy men: a double-blinded randomised crossover design

PubMed Central

2010-01-01

Background Calcium (Ca) - fortified foods are likely to play an important role in helping the consumer achieve an adequate Ca intake, especially for persons with a low intake of dairy products. Fish bones have a high Ca content, and huge quantities of this raw material are available as a by-product from the fish industry. Previously, emphasis has been on producing high quality products from fish by-products by use of bacterial proteases. However, documentation of the nutritional value of the enzymatically rinsed Ca-rich bone fraction remains unexplored. The objective of the present study was to assess the bioavailability of calcium in bones of Atlantic salmon (oily fish) and Atlantic cod (lean fish) in a double-blinded randomised crossover design. Methods Ca absorption was measured in 10 healthy young men using 47Ca whole body counting after ingestion of a test meal extrinsically labelled with the 47Ca isotope. The three test meals contained 800 mg of Ca from three different calcium sources: cod bones, salmon bones and control (CaCO3). Results Mean Ca absorption (± SEE) from the three different Ca sources were 21.9 ± 1.7%, 22.5 ± 1.7% and 27.4 ± 1.8% for cod bones, salmon bones, and control (CaCO3), respectively. Conclusion We conclude that bones from Atlantic salmon and Atlantic cod are suitable as natural Ca sources in e.g. functional foods or as supplements. PMID:20646299

Ocean Acidification Portends Acute Habitat Compression for Atlantic Cod (Gadus morhua) in a Physiologically-informed Metabolic Rate Model

NASA Astrophysics Data System (ADS)

Del Raye, G.; Weng, K.

2011-12-01

Ocean acidification affects organisms on a biochemical scale, yet its societal impacts manifest from changes that propagate through entire populations. Successful forecasting of the effects of ocean acidification therefore depends on at least two steps: (1) deducing systemic physiology based on subcellular stresses and (2) scaling individual physiology up to ecosystem processes. Predictions that are based on known biological processes (process-based models) may fare better than purely statistical models in both these steps because the latter are less robust to novel environmental conditions. Here we present a process-based model that uses temperature, pO2, and pCO2 to predict maximal aerobic scope in Atlantic cod. Using this model, we show that (i) experimentally-derived physiological parameters are sufficient to capture the response of cod aerobic scope to temperature and oxygen, and (ii) subcellular pH effects can be used to predict the systemic physiological response of cod to an acidified ocean. We predict that acute pH stress (on a scale of hours) could limit the mobility of Atlantic cod during diel vertical migration across a pCO2 gradient, promoting habitat compression. Finally, we use a global sensitivity analysis to identify opportunities for the improvement of model uncertainty as well as some physiological adaptations that could mitigate climate stresses on cod in the future.

Daily variation in ingress of fall-spawned larval fishes into Delaware Bay in relation to alongshore and along-estuary wind components

NASA Astrophysics Data System (ADS)

Schieler, Brittany M.; Hale, Edward A.; Targett, Timothy E.

2014-12-01

Identifying factors that affect ingress of larval fishes from offshore spawning areas into estuarine nurseries is important to improve understanding of variability in recruitment of many coastal marine species. This study investigated the ingress of larval Atlantic croaker (Micropogonias undulatus), Atlantic menhaden (Brevoortia tyrannus), and summer flounder (Paralichthys dentatus) at Roosevelt Inlet, near the mouth of Delaware Bay, USA in relation to short-term wind events. Nightly abundances, from November 15 to December 15, 2010, were analyzed with alongshore and along-estuary wind components (direction and speed) using cross-correlation analysis to determine if winds affect larval ingress. Ingress of Atlantic croaker and summer flounder correlated with along-estuary winds, whereas Atlantic menhaden showed no significant correlations with either alongshore or along-estuary winds. Although along-estuary winds during this period were predominantly down-estuary, Atlantic croaker ingress was correlated with positive along-estuary winds (blowing up-estuary), with a three-day lag; and a particularly large ingress peak occurred following the largest up-estuary wind peak. Ingress of summer flounder was correlated with negative along-estuary winds (blowing down-estuary), with a two-day lag. These results suggest that species-specific vertical position in the water column influenced ingress into Delaware Bay. The lag results also suggest that ingressing Atlantic croaker and summer flounder may have a pooling stage outside the mouth of Delaware Bay.

Compounds of parasitic roundworm absorbing in the visible region: target molecules for detection of roundworm in Atlantic cod.

PubMed

Stormo, Svein K; Ernstsen, Arild; Nilsen, Heidi; Heia, Karsten; Sivertsen, Agnar H; Elvevoll, Edel

2004-07-01

The objective of this study was to contribute to the development of technology that will be able to replace manual operations in processing of fish fillets. Removal of parasites, black lining, remnants of skin, and bloodstains are costly and time-consuming operations to the fish processing industry. The presence of parasites in fish products tends to spoil consumers' appetites. Recent reports questioning the safety of eating cod infected with parasites might lower consumer acceptance of seafood. Presently, parasites are detected and removed manually. An average efficiency of about 75% under commercial conditions has been reported. In this study, we focused on biochemical differences between cod muscle and the prevalent anisakine nematode species (Anisakis simplex and Pseudoterranova decipiens) infecting Atlantic cod (Gadus morhua). Using reversed phase high-performance liquid chromatography equipped with a photodiode array detector, substances absorbing in the range 300 to 600 nm were identified in extracts from parasite material. These substances were not detected in extracts from cod tissue. Significant biochemical differences between cod muscle and parasite material have thus been demonstrated.

Historical DNA reveals the demographic history of Atlantic cod (Gadus morhua) in medieval and early modern Iceland

PubMed Central

Ólafsdóttir, Guðbjörg Ásta; Westfall, Kristen M.; Edvardsson, Ragnar; Pálsson, Snæbjörn

2014-01-01

Atlantic cod (Gadus morhua) vertebrae from archaeological sites were used to study the history of the Icelandic Atlantic cod population in the time period of 1500–1990. Specifically, we used coalescence modelling to estimate population size and fluctuations from the sequence diversity at the cytochrome b (cytb) and Pantophysin I (PanI) loci. The models are consistent with an expanding population during the warm medieval period, large historical effective population size (NE), a marked bottleneck event at 1400–1500 and a decrease in NE in early modern times. The model results are corroborated by the reduction of haplotype and nucleotide variation over time and pairwise population distance as a significant portion of nucleotide variation partitioned across the 1550 time mark. The mean age of the historical fished stock is high in medieval times with a truncation in age in early modern times. The population size crash coincides with a period of known cooling in the North Atlantic, and we conclude that the collapse may be related to climate or climate-induced ecosystem change. PMID:24403343

Historical DNA reveals the demographic history of Atlantic cod (Gadus morhua) in medieval and early modern Iceland.

PubMed

Ólafsdóttir, Guðbjörg Ásta; Westfall, Kristen M; Edvardsson, Ragnar; Pálsson, Snæbjörn

2014-02-22

Atlantic cod (Gadus morhua) vertebrae from archaeological sites were used to study the history of the Icelandic Atlantic cod population in the time period of 1500-1990. Specifically, we used coalescence modelling to estimate population size and fluctuations from the sequence diversity at the cytochrome b (cytb) and Pantophysin I (PanI) loci. The models are consistent with an expanding population during the warm medieval period, large historical effective population size (NE), a marked bottleneck event at 1400-1500 and a decrease in NE in early modern times. The model results are corroborated by the reduction of haplotype and nucleotide variation over time and pairwise population distance as a significant portion of nucleotide variation partitioned across the 1550 time mark. The mean age of the historical fished stock is high in medieval times with a truncation in age in early modern times. The population size crash coincides with a period of known cooling in the North Atlantic, and we conclude that the collapse may be related to climate or climate-induced ecosystem change.

Extracellular glucose can fuel metabolism in red blood cells from high glycemic Atlantic cod (Gadus morhua) but not low glycemic short-horned sculpin (Myoxocephalus scorpius).

PubMed

Driedzic, William R; Clow, Kathy A; Short, Connie E

2014-11-01

Energy metabolism was assessed in red blood cells (RBCs) from Atlantic cod and short-horned sculpin, two species that have markedly different levels of blood glucose. The objective was to determine whether the level of extracellular glucose has an impact on rates of glucose metabolism. The blood glucose level was 2.5 mmol l(-1) in Atlantic cod and 0.2 mmol l(-1) in short-horned sculpin, respectively. Oxygen consumption, lactate production and glucose utilization were measured in whole blood and related to grams of RBCs. Glucose utilization was assessed by measuring both glucose disappearance and the production of (3)H2O from [2-(3)H]-glucose. RBCs from both species have an aerobic-based metabolism. In Atlantic cod, extracellular glucose is sufficient to provide the sum of glucosyl equivalents to support both oxidative metabolism and lactate production. In contrast, extracellular glucose can account for only 10% of the metabolic rate in short-horned sculpin RBCs. In both species, about 70% of glucose enters the RBCs via facilitated transport. The difference in rates of extracellular glucose utilization is related to the extremely low levels of blood glucose in short-horned sculpin. In this species energy metabolism by RBCs must be supported by alternative fuels. © 2014. Published by The Company of Biologists Ltd.

Life on the edge: O2 binding in Atlantic cod red blood cells near their southern distribution limit is not sensitive to temperature or haemoglobin genotype

PubMed Central

Barlow, Samantha L.; Metcalfe, Julian; Righton, David A.

2017-01-01

ABSTRACT Atlantic cod are a commercially important species believed to be threatened by warming seas near their southern, equatorward upper thermal edge of distribution. Limitations to circulatory O2 transport, in particular cardiac output, and the geographic distribution of functionally different haemoglobin (Hb) genotypes have separately been suggested to play a role in setting thermal tolerance in this species. The present study assessed the thermal sensitivity of O2 binding in Atlantic cod red blood cells with different Hb genotypes near their upper thermal distribution limit and modelled its consequences for the arterio-venous O2 saturation difference, Sa–vO2, another major determinant of circulatory O2 supply rate. The results showed statistically indistinguishable red blood cell O2 binding between the three HbI genotypes in wild-caught Atlantic cod from the Irish Sea (53° N). Red blood cells had an unusually low O2 affinity, with reduced or even reversed thermal sensitivity between pH 7.4 and 7.9, and 5.0 and 20.0°C. This was paired with strongly pH-dependent affinity and cooperativity of red blood cell O2 binding (Bohr and Root effects). Modelling of Sa–vO2 at physiological pH, temperature and O2 partial pressures revealed a substantial capacity for increases in Sa–vO2 to meet rising tissue O2 demands at 5.0 and 12.5°C, but not at 20°C. Furthermore, there was no evidence for an increase of maximal Sa–vO2 with temperature. It is suggested that Atlantic cod at such high temperatures may solely depend on increases in cardiac output and blood O2 capacity, or thermal acclimatisation of metabolic rate, for matching circulatory O2 supply to tissue demand. PMID:28148818

Life on the edge: O2 binding in Atlantic cod red blood cells near their southern distribution limit is not sensitive to temperature or haemoglobin genotype.

PubMed

Barlow, Samantha L; Metcalfe, Julian; Righton, David A; Berenbrink, Michael

2017-02-01

Atlantic cod are a commercially important species believed to be threatened by warming seas near their southern, equatorward upper thermal edge of distribution. Limitations to circulatory O 2 transport, in particular cardiac output, and the geographic distribution of functionally different haemoglobin (Hb) genotypes have separately been suggested to play a role in setting thermal tolerance in this species. The present study assessed the thermal sensitivity of O 2 binding in Atlantic cod red blood cells with different Hb genotypes near their upper thermal distribution limit and modelled its consequences for the arterio-venous O 2 saturation difference, Sa-v O 2 , another major determinant of circulatory O 2 supply rate. The results showed statistically indistinguishable red blood cell O 2 binding between the three HbI genotypes in wild-caught Atlantic cod from the Irish Sea (53° N). Red blood cells had an unusually low O 2 affinity, with reduced or even reversed thermal sensitivity between pH 7.4 and 7.9, and 5.0 and 20.0°C. This was paired with strongly pH-dependent affinity and cooperativity of red blood cell O 2 binding (Bohr and Root effects). Modelling of Sa-v O 2  at physiological pH, temperature and O 2 partial pressures revealed a substantial capacity for increases in Sa-v O 2  to meet rising tissue O 2 demands at 5.0 and 12.5°C, but not at 20°C. Furthermore, there was no evidence for an increase of maximal Sa-v O 2  with temperature. It is suggested that Atlantic cod at such high temperatures may solely depend on increases in cardiac output and blood O 2 capacity, or thermal acclimatisation of metabolic rate, for matching circulatory O 2 supply to tissue demand. © 2017. Published by The Company of Biologists Ltd.

Effects of Loma morhua (Microsporidia) infection on the cardiorespiratory performance of Atlantic cod Gadus morhua (L).

PubMed

Powell, M D; Gamperl, A K

2016-02-01

The microsporidian Loma morhua infects Atlantic cod (Gadus morhua) in the wild and in culture and results in the formation of xenomas within the gill filaments, heart and spleen. Given the importance of the two former organs to metabolic capacity and thermal tolerance, the cardiorespiratory performance of cod with a naturally acquired infection of Loma was measured during an acute temperature increase (2 °C h(-1)) from 10 °C to the fish's critical thermal maximum (CT(Max)). In addition, oxygen consumption and swimming performance were measured during two successive critical swimming speed (U(crit)) tests at 10 °C. While Loma infection had a negative impact on cod cardiac function at warm temperatures, and on metabolic capacity in both the CT(Max) and U(crit) tests (i.e. a reduction of 30-40%), it appears that the Atlantic cod can largely compensate for these Loma-induced cardiorespiratory limitations. For example, (i) CT(Max) (21.0 ± 0.3 °C) and U(crit) (~1.75 BL s(-1)) were very comparable to those reported in previous studies using uninfected fish from the same founder population; and (ii) our data suggest that tissue oxygen extraction, and potentially the capacity for anaerobic metabolism, is enhanced in fish infected with this microsporidian. © 2015 The Authors Journal of Fish Diseases Published by John Wiley & Sons Ltd.

Effects of long-term temperature acclimation on thyroid hormone deiodinase function, plasma thyroid hormone levels, growth, and reproductive status of male Atlantic cod, Gadus morhua.

PubMed

Cyr, D G; Idler, D R; Audet, C; McLeese, J M; Eales, J G

1998-01-01

The recent collapse of the Northwestern Atlantic cod fisheries has coincided with a cooling of water temperatures. During this time the condition factor of cod has been poor. The objective of the present study was to determine the effects of long-term temperature acclimation on growth reproduction and thyroid function in laboratory held Atlantic cod (Gadus morhua). One of the key parameters used to assess thyroid function is the peripheral metabolism of L-thyroxine (T4) by microsomal deiodinase enzymes. Deiodinase function has not been described for gadid fish. T4 outer-ring deiodinating activity (apparent K(m) 1-2 nM) was confined primarily to liver. Its properties resembled those for hepatic T4ORD activity of other teleosts and the mammalian type II deiodinase. The T4ORD activity of cod liver exceeded that of salmonids and could explain the high plasma T3 levels (10-18 ng/ml), which were 2-5 times greater than T4 levels. T4 and T3 inner-ring deiodination was confined mainly to brain. In order to determine the effects of long-term temperature acclimation on cod, somatic growth, reproduction, and thyroidal status were assessed monthly in 400-900-g satiation-fed male Atlantic cod captured in June from the St. Lawrence Estuary and then acclimated from August to the following June under a natural photoperiod at 2-4 degrees C (LT) or 6-10 degrees C (HT). Reproductive status was determined from the gonadosomatic index (GSI), plasma testosterone (T) and 11-ketotestosterone (11-KT) levels, and the appearance of milt; thyroidal status was determined from plasma T4 and 3,5,3'-triiodo-L-thyronine (T3) levels and hepatic T4ORD activity to produce biologically active T3. Testis maturation (high levels of 1 and 11-KT, and milt release) occurred in April and May and was uninfluenced by acclimation temperature. LT cod grew more slowly than HT cod. Differences in body weight were particularly evident from December to February. In conclusion, (i) cod possess outer- and inner-ring deiodinase activities, predominating respectively in liver and brain, and with properties resembling those of other teleosts, (ii) T4ORD activity of liver is unusually high and may account for the high plasma T3 levels in this species, (iii) T4ORD activity tends to increase during periods of increased somatic growth, and (iv) chronic acclimation of male cod to 2-4 degrees C, as opposed to 6-10 degrees C, decreases somatic growth but does alter circulating levels of thyroid hormones and androgens and it does not change the time of sexual maturation.

Parasitic infection by larval helminths in Antarctic fishes: pathological changes and impact on the host body condition index

USGS Publications Warehouse

Santoro, Mario; Mattiucci, Simonetta; Work, Thierry M.; Cimmaruta, Roberta; Nardi, Valentina; Cipriani, Paolo; Bellisario, Bruno; Nascetti, Giuseppe

2013-01-01

We examined pathological changes and relationship between body condition index (BCI) and parasitic infection in 5 species of fish, including 42 icefish Chionodraco hamatus (Channichtyidae), 2 dragonfish Cygnodraco mawsoni (Bathydraconidae), 30 emerald rock cod Trematomus bernacchii, 46 striped rock cod T. hansoni and 9 dusty rock cod T. newnesi (Nototheniidae) from the Ross Sea, Antarctica. All parasites were identified by a combination of morphology and mtDNA cytochrome-oxidase-2 sequence (mtDNA cox2) analysis, except Contracaecum osculatum s.l., for which only the latter was used. Five larval taxa were associated with pathological changes including 2 sibling species (D and E) of the C. osculatum species complex and 3 cestodes including plerocercoids of a diphyllobothridean, and 2 tetraphyllidean forms including cercoids with monolocular and bilocular bothridia. The most heavily infected hosts were C. hamatus and C. mawsoni, with C. hamatus most often infected by C. osculatum sp. D and sp. E and diphyllobothrideans, while C. mawsoni was most often infected with tetraphyllidean forms. Histologically, all fish showed varying severity of chronic inflammation associated with larval forms of helminths. Diphyllobothrideans and C. osculatum spp. were located in gastric muscularis or liver and were associated with necrosis and mild to marked fibrosis. Moderate multifocal rectal mucosal chronic inflammation was associated with attached tetraphyllidean scolices. C. hamatus showed a strong negative correlation between BCI and parasite burden.

Parasitic infection by larval helminths in Antarctic fishes: pathological changes and impact on the host body condition index.

PubMed

Santoro, Mario; Mattiucci, Simonetta; Work, Thierry; Cimmaruta, Roberta; Nardi, Valentina; Cipriani, Paolo; Bellisario, Bruno; Nascetti, Giuseppe

2013-07-22

We examined pathological changes and relationship between body condition index (BCI) and parasitic infection in 5 species of fish, including 42 icefish Chionodraco hamatus (Channichtyidae), 2 dragonfish Cygnodraco mawsoni (Bathydraconidae), 30 emerald rock cod Trematomus bernacchii, 46 striped rock cod T. hansoni and 9 dusty rock cod T. newnesi (Nototheniidae) from the Ross Sea, Antarctica. All parasites were identified by a combination of morphology and mtDNA cytochrome-oxidase-2 sequence (mtDNA cox2) analysis, except Contracaecum osculatum s.l., for which only the latter was used. Five larval taxa were associated with pathological changes including 2 sibling species (D and E) of the C. osculatum species complex and 3 cestodes including plerocercoids of a diphyllobothridean, and 2 tetraphyllidean forms including cercoids with monolocular and bilocular bothridia. The most heavily infected hosts were C. hamatus and C. mawsoni, with C. hamatus most often infected by C. osculatum sp. D and sp. E and diphyllobothrideans, while C. mawsoni was most often infected with tetraphyllidean forms. Histologically, all fish showed varying severity of chronic inflammation associated with larval forms of helminths. Diphyllobothrideans and C. osculatum spp. were located in gastric muscularis or liver and were associated with necrosis and mild to marked fibrosis. Moderate multifocal rectal mucosal chronic inflammation was associated with attached tetraphyllidean scolices. C. hamatus showed a strong negative correlation between BCI and parasite burden.

Harvest Pressure on Coastal Atlantic Cod (Gadus morhua) from Recreational Fishing Relative to Commercial Fishing Assessed from Tag-Recovery Data

PubMed Central

Kleiven, Alf Ring; Fernandez-Chacon, Albert; Nordahl, Jan-Harald; Moland, Even; Espeland, Sigurd Heiberg; Knutsen, Halvor; Olsen, Esben Moland

2016-01-01

Marine recreational fishing is a popular outdoor activity. However, knowledge about the magnitude of recreational catches relative to commercial catches in coastal fisheries is generally sparse. Coastal Atlantic cod (Gadus morhua) is a target species for recreational fishers in the North Atlantic. In Norway, recreational fishers are allowed to use a variety of traps and nets as well as long-line and rod and line when fishing for cod. From 2005 to 2013, 9729 cod (mean size: 40 cm, range: 15–93 cm) were tagged and released in coastal Skagerrak, southeast Norway. Both high-reward (NOK 500) and low-reward tags (NOK 50) were used in this study. Because some harvested fish (even those posting high-reward tags) may go unreported by fishers, reporting rates were estimated from mark-recovery models that incorporate detection parameters in their structure, in addition to survival and mortality estimates. During 2005 to 2013, a total of 1707 tagged cod were recovered and reported by fishers. We estimate the overall annual survival to be 33% (SE 1.5). Recreational rod and line fishing were responsible for 33.7% (SE 2.4) of total mortality, followed by commercial fisheries (15.1% SE 0.8) and recreational fixed gear (6.8% SE 0.4). Natural mortality was 44.4% (SE 2.5) of total mortality. Our findings suggest that recreational fishing—rod and line fishing in particular—is responsible for a substantial part of fishing mortality exerted on coastal cod in southern Norway. PMID:26959371

Harvest Pressure on Coastal Atlantic Cod (Gadus morhua) from Recreational Fishing Relative to Commercial Fishing Assessed from Tag-Recovery Data.

PubMed

Kleiven, Alf Ring; Fernandez-Chacon, Albert; Nordahl, Jan-Harald; Moland, Even; Espeland, Sigurd Heiberg; Knutsen, Halvor; Olsen, Esben Moland

2016-01-01

Marine recreational fishing is a popular outdoor activity. However, knowledge about the magnitude of recreational catches relative to commercial catches in coastal fisheries is generally sparse. Coastal Atlantic cod (Gadus morhua) is a target species for recreational fishers in the North Atlantic. In Norway, recreational fishers are allowed to use a variety of traps and nets as well as long-line and rod and line when fishing for cod. From 2005 to 2013, 9729 cod (mean size: 40 cm, range: 15-93 cm) were tagged and released in coastal Skagerrak, southeast Norway. Both high-reward (NOK 500) and low-reward tags (NOK 50) were used in this study. Because some harvested fish (even those posting high-reward tags) may go unreported by fishers, reporting rates were estimated from mark-recovery models that incorporate detection parameters in their structure, in addition to survival and mortality estimates. During 2005 to 2013, a total of 1707 tagged cod were recovered and reported by fishers. We estimate the overall annual survival to be 33% (SE 1.5). Recreational rod and line fishing were responsible for 33.7% (SE 2.4) of total mortality, followed by commercial fisheries (15.1% SE 0.8) and recreational fixed gear (6.8% SE 0.4). Natural mortality was 44.4% (SE 2.5) of total mortality. Our findings suggest that recreational fishing-rod and line fishing in particular-is responsible for a substantial part of fishing mortality exerted on coastal cod in southern Norway.

Behavioral responses of Atlantic cod to sea temperature changes.

PubMed

Freitas, Carla; Olsen, Esben Moland; Moland, Even; Ciannelli, Lorenzo; Knutsen, Halvor

2015-05-01

Understanding responses of marine species to temperature variability is essential to predict impacts of future climate change in the oceans. Most ectotherms are expected to adjust their behavior to avoid extreme temperatures and minimize acute changes in body temperature. However, measuring such behavioral plasticity in the wild is challenging. Combining 4 years of telemetry-derived behavioral data on juvenile and adult (30-80 cm) Atlantic cod (Gadus morhua), and in situ ocean temperature measurements, we found a significant effect of sea temperature on cod depth use and activity level in coastal Skagerrak. During summer, cod were found in deeper waters when sea surface temperature increased. Further, this effect of temperature was stronger on larger cod. Diel vertical migration, which consists in a nighttime rise to shallow feeding habitats, was stronger among smaller cod. As surface temperature increased beyond ∼15°C, their vertical migration was limited to deeper waters. In addition to larger diel vertical migrations, smaller cod were more active and travelled larger distances compared to larger specimens. Cold temperatures during winter tended, however, to reduce the magnitude of diel vertical migrations, as well as the activity level and distance moved by those smaller individuals. Our findings suggest that future and ongoing rises in sea surface temperature may increasingly deprive cod in this region from shallow feeding areas during summer, which may be detrimental for local populations of the species.

Behavioral responses of Atlantic cod to sea temperature changes

PubMed Central

Freitas, Carla; Olsen, Esben Moland; Moland, Even; Ciannelli, Lorenzo; Knutsen, Halvor

2015-01-01

Understanding responses of marine species to temperature variability is essential to predict impacts of future climate change in the oceans. Most ectotherms are expected to adjust their behavior to avoid extreme temperatures and minimize acute changes in body temperature. However, measuring such behavioral plasticity in the wild is challenging. Combining 4 years of telemetry-derived behavioral data on juvenile and adult (30–80 cm) Atlantic cod (Gadus morhua), and in situ ocean temperature measurements, we found a significant effect of sea temperature on cod depth use and activity level in coastal Skagerrak. During summer, cod were found in deeper waters when sea surface temperature increased. Further, this effect of temperature was stronger on larger cod. Diel vertical migration, which consists in a nighttime rise to shallow feeding habitats, was stronger among smaller cod. As surface temperature increased beyond ∼15°C, their vertical migration was limited to deeper waters. In addition to larger diel vertical migrations, smaller cod were more active and travelled larger distances compared to larger specimens. Cold temperatures during winter tended, however, to reduce the magnitude of diel vertical migrations, as well as the activity level and distance moved by those smaller individuals. Our findings suggest that future and ongoing rises in sea surface temperature may increasingly deprive cod in this region from shallow feeding areas during summer, which may be detrimental for local populations of the species. PMID:26045957

Injection-salting and cold-smoking of farmed atlantic cod (Gadus morhua L.) and Atlantic salmon (Salmo salar L.) at different stages of Rigor Mortis: effect on physical properties.

PubMed

Akse, L; Birkeland, S; Tobiassen, T; Joensen, S; Larsen, R

2008-10-01

Processing of fish is generally conducted postrigor, but prerigor processing is associated with some potential advantages. The aim of this study was to study how 5 processing regimes of cold-smoked cod and salmon conducted at different stages of rigor influenced yield, fillet shrinkage, and gaping. Farmed cod and salmon was filleted, salted by brine injection of 25% NaCl, and smoked for 2 h at different stages of rigor. Filleting and salting prerigor resulted in increased fillet shrinkage and less increase in weight during brine injection, which in turn was correlated to the salt content of the fillet. These effects were more pronounced in cod fillets when compared to salmon. Early processing reduced fillet gaping and fillets were evaluated as having a firmer texture. In a follow-up trial with cod, shrinkage and weight gain during injection was studied as an effect of processing time postmortem. No changes in weight gain were observed for fillets salted the first 24 h postmortem; however, by delaying the processing 12 h postmortem, the high and rapid shrinking of cod fillets during brine injection was halved.

Will you swim into my parlour? In situ observations of Atlantic cod (Gadus morhua) interactions with baited pots, with implications for gear design

PubMed Central

Walsh, Philip; Favaro, Brett

2017-01-01

Pots (also known as traps) are baited fishing gears widely used in commercial fisheries, and are being considered as a tool for harvesting Atlantic cod (Gadus morhua) in Newfoundland and Labrador, Canada. Pots produce lower environmental impacts than many other fishing gears, but they will only be a viable fishing strategy if they are efficient and selective at catching their target species. To study the behaviour of cod in and around pots, and how those behaviours affect pot efficiency, we used long-duration underwater video cameras to assess two models of cod pot deployed in the nearshore waters of Fogo Island, NL. We examined the number of cod that approached the pot, the number and proportion that successfully completed entries into the pot openings, and the number that exited, and related these factors to the direction of water movement. We observed very few entry attempts relative to the number of approaches by cod, and only 22% of all entry attempts were successful. We observed that 50% of approaches, 70% of entry attempts, and 73% of successful entrances occurred against the current, and 25% of cod were able to exit the pot following capture. Based on our observations, we suggest that future cod pots should have a greater number of entrances, or a mechanism to ensure that entrances rotate in line with the current, in order to maximize their catch efficiency for cod. PMID:28194312

Will you swim into my parlour? In situ observations of Atlantic cod (Gadus morhua) interactions with baited pots, with implications for gear design.

PubMed

Meintzer, Phillip; Walsh, Philip; Favaro, Brett

2017-01-01

Pots (also known as traps) are baited fishing gears widely used in commercial fisheries, and are being considered as a tool for harvesting Atlantic cod ( Gadus morhua ) in Newfoundland and Labrador, Canada. Pots produce lower environmental impacts than many other fishing gears, but they will only be a viable fishing strategy if they are efficient and selective at catching their target species. To study the behaviour of cod in and around pots, and how those behaviours affect pot efficiency, we used long-duration underwater video cameras to assess two models of cod pot deployed in the nearshore waters of Fogo Island, NL. We examined the number of cod that approached the pot, the number and proportion that successfully completed entries into the pot openings, and the number that exited, and related these factors to the direction of water movement. We observed very few entry attempts relative to the number of approaches by cod, and only 22% of all entry attempts were successful. We observed that 50% of approaches, 70% of entry attempts, and 73% of successful entrances occurred against the current, and 25% of cod were able to exit the pot following capture. Based on our observations, we suggest that future cod pots should have a greater number of entrances, or a mechanism to ensure that entrances rotate in line with the current, in order to maximize their catch efficiency for cod.

Variation in embryonic mortality and maternal transcript expression among Atlantic cod (Gadus morhua) broodstock: a functional genomics study.

PubMed

Rise, Matthew L; Nash, Gordon W; Hall, Jennifer R; Booman, Marije; Hori, Tiago S; Trippel, Edward A; Gamperl, A Kurt

2014-12-01

Early life stage mortality is an important issue for Atlantic cod aquaculture, yet the impact of the cod maternal (egg) transcriptome on egg quality and mortality during embryonic development is poorly understood. In the present work, we studied embryonic mortality and maternal transcript expression using eggs from 15 females. Total mortality at 7days post-fertilization (7 dpf, segmentation stage) was used as an indice of egg quality. A 20,000 probe (20K) microarray experiment compared the 7hours post-fertilization (7 hpf, ~2-cell stage) egg transcriptome of the two lowest quality females (>90% mortality at 7 dpf) to that of the highest quality female (~16% mortality at 7 dpf). Forty-three microarray probes were consistently differentially expressed in both low versus high quality egg comparisons (25 higher expressed in low quality eggs, and 18 higher expressed in high quality eggs). The microarray experiment also identified many immune-relevant genes [e.g. interferon (IFN) pathway genes ifngr1 and ifrd1)] that were highly expressed in eggs of all 3 females regardless of quality. Twelve of the 43 candidate egg quality-associated genes, and ifngr1, ifrd1 and irf7, were included in a qPCR study with 7 hpf eggs from all 15 females. Then, the genes that were confirmed by qPCR to be greater than 2-fold differentially expressed between 7 hpf eggs from the lowest and highest quality females (dcbld1, ddc, and acy3 more highly expressed in the 2 lowest quality females; kpna7 and hacd1 more highly expressed in the highest quality female), and the 3 IFN pathway genes, were included in a second qPCR study with unfertilized eggs. While some maternal transcripts included in these qPCR studies were associated with extremes in egg quality, there was little correlation between egg quality and gene expression when all females were considered. Both dcbld1 and ddc showed greater than 100-fold differences in transcript expression between females and were potentially influenced by family. The Atlantic cod ddc (dopa decarboxylase) complete cDNA was characterized, and has a 1461bp open reading frame encoding a 486 amino acid protein that contains all eight residues of the conserved pyridoxal 5'-phosphate binding site including the catalytic lysine. This study provides valuable new information and resources related to the Atlantic cod egg transcriptome. Some of these microarray-identified, qPCR-confirmed, Atlantic cod egg transcripts (e.g. ddc, kpna7) play important roles during embryonic development of other vertebrate species, and may have similar functions in Atlantic cod. Copyright © 2014. Published by Elsevier B.V.

Study of the plasma proteome of Atlantic cod (Gadus morhua): Effect of exposure to two PAHs and their corresponding diols.

PubMed

Skogland Enerstvedt, Karianne; Sydnes, Magne O; Pampanin, Daniela M

2017-09-01

Occurrence of polycyclic aromatic hydrocarbon (PAH) contamination in the marine environment represents a risk to marine life and humans. In this study, plasma samples from Atlantic cod (Gadus morhua) were analysed by shotgun mass spectrometry to investigate the plasma proteome in response to exposure to single PAHs (naphthalene or chrysene) and their corresponding metabolites (dihydrodiols). In total, 369 proteins were identified and ranked according to their relative abundance. The levels of 12 proteins were found significantly altered in PAH exposed fish and are proposed as new biomarker candidates. Eleven proteins were upregulated, primarily immunoglobulin components, and one protein was downregulated (antifreeze protein type IV.) The uniformity of the upregulated proteins suggests a triggered immune response in the exposed fish. Overall, the results provide valuable knowledge for future studies of the Atlantic cod plasma proteome and generate grounds for establishing new plasma protein biomarkers for environmental monitoring of PAH related exposure. Copyright © 2017 Elsevier Ltd. All rights reserved.

Slow Adaptation in the Face of Rapid Warming Leads to the Collapse of Atlantic Cod in the Gulf of Maine

NASA Astrophysics Data System (ADS)

Pershing, A. J.; Alexander, M. A.; Hernandez, C.; Kerr, L. A.; Le Bris, A.; Mills, K.; Nye, J. A.; Record, N.; Scannell, H. A.; Scott, J. D.; Sherwood, G. D.; Thomas, A. C.

2016-02-01

Climate change is altering conditions in all marine ecosystems, but the pace of change is not uniform. Rapid changes in environmental conditions pose a challenge for resource management, especially when available tools or policies assume the environment is stationary. Between 2004 and 2013, the Gulf of Maine and northwest Atlantic Shelf warmed at a rate that few large marine ecosystems have ever experienced. This warming was associated with a northward shift in the Gulf Stream and with Atlantic Multidecadal Oscillation and Pacific Decadal Oscillation. The unprecedented warming led to reduced recruitment and enhanced mortality of Atlantic cod. Fisheries management has built-in feedbacks designed to reduce quotas as populations decline, but the management process could not keep pace with the rapid temperature-related changes in the Gulf of Maine cod stock. Future recovery of this fishery now depends on both sound management and favorable temperatures. The experience in the Gulf of Maine highlights the need to incorporate environmental factors into resource management and to build resiliency in coupled social-ecological systems. It also highlights a need for scientific and policy guidance for managing species threatened by future warming.

Substitution of fish oil with camelina oil and inclusion of camelina meal in diets fed to Atlantic cod (Gadus morhua) and their effects on growth, tissue lipid classes, and fatty acids.

PubMed

Hixson, S M; Parrish, C C

2014-03-01

Developing a commercially relevant Atlantic cod aquaculture industry will require improvements in feed sustainability. Camelina oil and meal are potential replacements of fish oil and fish meal in aquaculture feeds. Camelina oil is high in 18:3ω3 (30%), with an ω3/ω6 ratio > 1. Camelina meal has a considerable crude protein level (38%), which includes significant amounts of methionine and phenylalanine. Four diets were tested; each diet was fed to triplicate tanks (3 tanks per diet) of Atlantic cod (14.4 g/fish; 70 fish per tank) for 13 wk. The diets included a fish oil/fish meal control (FO) and three diets which replaced 100% of fish oil with camelina oil: one diet contained fish meal (100CO), another solvent extracted fish meal (100COSEFM), and another had fish meal partially reduced by 15% inclusion of camelina meal (100CO15CM). Growth was measured (length and weight) and tissue samples were collected for lipid analysis (muscle, liver, brain, gut, spleen, skin, and carcass) at wk 0 (before feeding the experimental diet) and at wk 13. Cod fed camelina oil had a lower (P < 0.001) final weight than cod fed the FO diet (50.8 ± 10.3 g/fish). Cod fed 100CO15CM had a lower (P < 0.001) final weight (35.0 ± 8.0 g) than those fed 100CO (43.6 ± 8.9 g) and 100COSEFM (46.7 ± 10.7 g). Cod tissues in the 100COSEFM treatment were most impacted by dietary fatty acid profile. Multivariate statistics revealed that FO and 100COSEFM tissue fatty acid profiles were 21 to 31% different, depending on tissue type. The full replacement of fish oil with camelina oil, plus solvent extracted fish meal had an overarching effect on the entire fatty acid profile of the whole animal. Fatty acid mass balance calculations indicated that cod fed 100COSEFM elongated 13% of 18:3ω3 to 20:3ω3 and oxidized the remaining 87%, whereas cod fed fish oil showed a much lower (P < 0.001) elongation of 18:3ω3 of 1.6%. These results suggest that excess 18:3ω3 from camelina oil caused some fatty acid elongation, but little desaturation. Energy budget estimates indicated that cod fed 100COSEFM deposited the most energy throughout the trial (60 kJ/fish; P = 0.019), mostly in the liver (90%). Excess camelina lipids were not necessarily utilized for energy, which likely impacted growth. Feeding 100% camelina oil to Atlantic cod impacted growth and lipid and fatty acid composition; however, additional removal of fish oil from fish meal caused the greatest change in cod lipid composition and utilization.

The ichthyoplankton assemblage and the environmental variables off the NW and N Iberian Peninsula coasts, in early spring

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Gonzalez-Nuevo, G.; Gonzalez-Pola, C.; Cabal, J.

2009-05-01

Ichthyoplankton and mesozooplankton were sampled and fluorescence and physical environmental variables were measured off the NW and N Iberian Peninsula coasts, during April 2005. A total of 51 species of fish larvae, belonging to 26 families, were recorded. Sardina pilchardus, with 43.8% and 58.7% of the total fish egg and larval catches, respectively, dominated the ichthyoplankton assemblage. The study area was divided by a cross-shelf frontal structure into two hydrographic regions that coincided with the Atlantic and Cantabrian geographic regions. Ichthyoplankton abundance was higher in the Cantabrian region while larval diversity was higher in the Atlantic region. This was the main alongshore variability in the structure of the larval fish assemblage. Nevertheless, the stronger variability, related with the presence of a shelf-slope front, was found in the central-eastern Cantabrian region where two major larval fish assemblages, an "outer" and a "coastal", were distinguished. The Atlantic region, where the shelf-slope front was not found, was inhabited by a single larval fish assemblage. Canonical correspondence analysis revealed that, off the NW and N Iberian Peninsula coasts, the horizontal distribution of larval fish species in early spring may be explained by a limited number of environmental variables. Of these, the most important were the physical variables depth and sea surface temperature.

Sensitivity of marine protected area network connectivity to atmospheric variability

NASA Astrophysics Data System (ADS)

Fox, Alan D.; Henry, Lea-Anne; Corne, David W.; Roberts, J. Murray

2016-11-01

International efforts are underway to establish well-connected systems of marine protected areas (MPAs) covering at least 10% of the ocean by 2020. But the nature and dynamics of ocean ecosystem connectivity are poorly understood, with unresolved effects of climate variability. We used 40-year runs of a particle tracking model to examine the sensitivity of an MPA network for habitat-forming cold-water corals in the northeast Atlantic to changes in larval dispersal driven by atmospheric cycles and larval behaviour. Trajectories of Lophelia pertusa larvae were strongly correlated to the North Atlantic Oscillation (NAO), the dominant pattern of interannual atmospheric circulation variability over the northeast Atlantic. Variability in trajectories significantly altered network connectivity and source-sink dynamics, with positive phase NAO conditions producing a well-connected but asymmetrical network connected from west to east. Negative phase NAO produced reduced connectivity, but notably some larvae tracked westward-flowing currents towards coral populations on the mid-Atlantic ridge. Graph theoretical metrics demonstrate critical roles played by seamounts and offshore banks in larval supply and maintaining connectivity across the network. Larval longevity and behaviour mediated dispersal and connectivity, with shorter lived and passive larvae associated with reduced connectivity. We conclude that the existing MPA network is vulnerable to atmospheric-driven changes in ocean circulation.

Novel biodiversity baselines outpace models of fish distribution in Arctic waters

NASA Astrophysics Data System (ADS)

Christiansen, Jørgen S.; Bonsdorff, Erik; Byrkjedal, Ingvar; Fevolden, Svein-Erik; Karamushko, Oleg V.; Lynghammar, Arve; Mecklenburg, Catherine W.; Møller, Peter D. R.; Nielsen, Julius; Nordström, Marie C.; Præbel, Kim; Wienerroither, Rupert M.

2016-02-01

During a recent marine biological expedition to the Northeast Greenland shelf break (latitudes 74-77 °N), we made the first discovery of Atlantic cod ( Gadus morhua), beaked redfish ( Sebastes mentella) and capelin ( Mallotus villosus). Our novel observations shift the distribution range of Atlantic cod >1000 km further north in East Greenland waters. In light of climate change, we discuss physical forcing and putative connections between the faunas of the Northeast Greenland shelf and the Barents Sea. We emphasise the importance of using real data in spread scenarios for understudied Arctic seas.

Novel biodiversity baselines outpace models of fish distribution in Arctic waters.

PubMed

Christiansen, Jørgen S; Bonsdorff, Erik; Byrkjedal, Ingvar; Fevolden, Svein-Erik; Karamushko, Oleg V; Lynghammar, Arve; Mecklenburg, Catherine W; Møller, Peter D R; Nielsen, Julius; Nordström, Marie C; Præbel, Kim; Wienerroither, Rupert M

2016-02-01

During a recent marine biological expedition to the Northeast Greenland shelf break (latitudes 74-77 °N), we made the first discovery of Atlantic cod (Gadus morhua), beaked redfish (Sebastes mentella) and capelin (Mallotus villosus). Our novel observations shift the distribution range of Atlantic cod >1000 km further north in East Greenland waters. In light of climate change, we discuss physical forcing and putative connections between the faunas of the Northeast Greenland shelf and the Barents Sea. We emphasise the importance of using real data in spread scenarios for understudied Arctic seas.

Factors contributing to variability in larval ingress of Atlantic menhaden, Brevoortia tyrannus

NASA Astrophysics Data System (ADS)

Lozano, C.; Houde, E. D.

2013-02-01

Annual recruitment levels of age-0 juvenile Atlantic menhaden to Chesapeake Bay, which historically supported >65% of coastwide recruitment, have been consistently low since the 1980s. Diminished larval supply to the Bay is one hypothesized explanation. In a three-year ichthyoplankton survey at the Chesapeake Bay mouth, abundance of ingressing larvae varied nine-fold among years. Larvae were most abundant in 2007-2008 and less abundant in 2005-2006 and 2006-2007. High month-to-month variability in larval concentrations was attributable primarily to seasonality of occurrences. There was no defined spatial pattern in distribution of larvae across the 18-km-wide Bay mouth, but larvae at the south side were longer and older on average than larvae at the middle and north side. Environmental variables measured at the times of larval collections were not correlated consistently with temporal and spatial variability in abundance of larvae at ingress, highlighting complexity and suggesting that abundance may be controlled by processes occurring offshore during the pre-ingress phase. Moreover, the substantial differences in inter-annual abundances of larvae at the Bay mouth were not concordant with subsequent abundances of age-0 juveniles in the three survey years, indicating that important processes affecting recruitment of Atlantic menhaden operate after ingress, during the larval to juvenile transition stage.

Low impact of exposure to environmentally relevant doses of 226Ra in Atlantic cod (Gadus morhua) embryonic cells.

PubMed

Olsvik, Pål A; Berntssen, Marc H G; Hylland, Ketil; Eriksen, Dag Ø; Holen, Elisabeth

2012-07-01

The aim of this study was to investigate whether (226)Ra, a radionuclide present in produced water from oil platforms in the North Sea and other offshore drilling areas, could affect vulnerable early life stages of Atlantic cod (Gadus morhua). Blastula-stage embryonic cells (EC) from fertilized eggs of Atlantic cod were isolated and exposed to environmental relevant concentrations of (226)Ra and transcription of selected genes quantified. The results showed a weak, but significant up-regulation of GPx3 and HSP70 transcripts after 48 h of exposure to 2.11 Bq/L. In EC exposed to three (226)Ra concentrations (2.11, 23 and 117 Bq/L) for 12 h, metallothionein, HSP90AA, thioredoxin and caspase 8 were significantly up-regulated in cells exposed to 117 Bq/L, whereas thioredoxin was also significantly up-regulated in EC exposed to 23 Bq/L. When EC were exposed to the same (226)Ra concentrations for 48 h, only heme oxygenase was significantly up-regulated in the 23 Bq/L exposure group. The results suggest that environmentally relevant activities of (226)Ra may induce oxidative stress and apoptosis in fish ECs. Exposure of Atlantic cod EC to Cd, selected as a model toxicant, supported the ability of EC around blastula stage to respond to toxicants by altered transcription. Due to dilution, environmentally relevant concentrations of radionuclides present in produced water would be expected to pose a minor threat to early life stages of fish. Copyright © 2012 Elsevier Ltd. All rights reserved.

An evaluation of the duration of efficacy of emamectin benzoate in the control of Caligus curtus Müller infestations in Atlantic cod, Gadus morhua L.

PubMed

Hamre, L A; Lunestad, B T; Hannisdal, R; Samuelsen, O B

2011-06-01

The duration of efficacy of emamectin benzoate in the control of Caligus curtus infestations in Atlantic cod, Gadus morhua L., was studied following an administration of 50 μg kg⁻¹ for seven consecutive days. No lice were found on medicated fish when challenged 1 week (challenge 1) or 5 weeks (challenge 2) following termination of medication, whereas the mean abundance of lice among the unmedicated fish was 17.9 and 19.3 lice per fish in challenge 1 and 2, respectively. Muscle concentrations of 19.5 ± 8.2 ng g⁻¹ and 3.4 ± 0.9 ng g⁻¹, respectively, and skin concentrations of 23.1 ± 10.8 and 4.2 ± 1.0 ng g⁻¹, respectively, were found 27 and 55 days following the termination of medication. Tissue concentrations and the duration of efficacy indicate a dosing regime for emamectin in cod, similar to the regime used for Atlantic salmon, Salmo salar L. © 2011 Blackwell Publishing Ltd.

Exophiala angulospora causes systemic inflammation in atlantic cod Gadus morhua.

PubMed

Gjessing, Mona Cecilie; Davey, Marie; Kvellestad, Agnar; Vrålstad, Trude

2011-10-06

Species of Exophiala are opportunistic fungal pathogens that may infect a broad range of warm- and cold-blooded animals, including salmonids and Atlantic cod. In the present study, we observed abnormal swimming behaviour and skin pigmentation and increased mortality in cod kept in an indoor tank. Necropsy revealed foci of different sizes with a greyish to brownish colour in internal organs of diseased fish. The foci consisted of ramifying darkly pigmented fungal hyphae surrounded by distinct layers of inflammatory cells, including macrophage-like cells. In the inner layer with many hyphae, the macrophage-like cells were dead. We observed no apparent restriction of fungal growth by the inflammatory response. A darkly pigmented fungus was repeatedly isolated in pure culture from foci of diseased fish and identified as Exophiala angulospora using morphological and molecular characters. This species has not been previously reported to cause disease in cod, but has been reported as an opportunistic pathogen of both marine and freshwater fish. Based on the morphology and sequence analysis presented here, we conclude that E. angulospora caused the observed chronic multifocal inflammation in internal organs of cod, leading to severe disease and mortality.

Phenotypic flexibility of digestive system in Atlantic cod (Gadus morhua).

PubMed

Blier, P U; Dutil, J-D; Lemieux, H; Bélanger, F; Bitetera, L

2007-02-01

This study examined the restoration of the digestive capacity of Atlantic cod (Gadus morhua Linnaeus) following a long period of food deprivation. Fifty cod (48 cm, 1 kg) were food-deprived for 68 days and then fed in excess with capelin (Mallotus villosus Müller) on alternate days. Ten fish were sampled after 0, 2, 6, 14 and 28 days and the mass of the pyloric caeca, intestine and carcass determined. Two metabolic enzymes (cytochrome c oxidase and citrate synthase) were assayed in white muscle, pyloric caeca and intestine, and trypsin activity was measured in the pyloric caeca. A delay of 14 days was required before body mass started to increase markedly, whereas most of the increase in mass of both the pyloric caeca and intestine relative to fish length occurred earlier in the experiment. By day 14, the activities of trypsin and citrate synthase in the pyloric caeca as well as citrate synthase in the intestine had reached maxima. The growth of the digestive tissues and restoration of their metabolic capacities thus occur early upon refeeding and are likely required for recovery growth to take place. The phenotypic flexibility of the cod digestive system is therefore remarkable: increases in trypsin activity and size of pyloric caeca resulted in a combined 29-fold increase in digestive capacity of the fish during the refeeding period. Our study suggests that Atlantic cod are able to cope with marked fluctuations in food availability in their environment by making a rapid adjustment of their digestive capacity as soon as food availability increases.

Seasonal variations in seminal plasma and sperm characteristics of wild-caught and cultivated Atlantic cod, Gadus morhua.

PubMed

Butts, I A E; Litvak, M K; Trippel, E A

2010-04-15

The objective was to investigate changes, throughout the spawning season, in body size attributes and quantitative semen characteristics of wild-caught and cultivated Atlantic cod, Gadus morhua L. Sperm velocity increased significantly throughout the spawning season of cod from both origins. Curvilinear velocity (VCL; 30 sec post-activation) increased from 78.9+/-6.5 to 128.2+/-6.5 microm/sec (mean+/-SEM) between the beginning and end of the spawning season, respectively, for wild-caught cod, whereas for cultivated fish, it increased from 26.6+/-2.4 to 48.9+/-3.1 microm/sec between January and March. Spermatocrit did not undergo a significant seasonal change in wild-caught cod but did thicken for cultivated cod (24.6+/-4.2% in January to 40.5+/-4.4% in April; P<0.01). Sperm head area, perimeter, length, and width declined significantly at the end of the spawning season of cod from both origins (all P values<0.01). Seminal plasma osmolality and Na(+) ion concentration followed a dome-shaped function through the spawning season for both wild-caught and cultivated cod (P<0.05). For cultivated cod, seminal plasma pH was significantly lower at the start of the spawning season (P<0.001), whereas Ca(2+) increased then decreased (P<0.05). Body size attributes, spermatocrit, and seminal plasma constituents had significant relationships with sperm activity variables. These relationships varied as a function of time post-activation, month, and fish origin. Our findings may be used to (i) assess spermiation stage without killing males; (ii) optimize semen collection for hatchery production; (iii) characterize the potential impact of farming on sperm quality; and (iv) improve success of sperm cryopreservation and short-term storage. Copyright 2010 Elsevier Inc. All rights reserved.

Contrasting Patterns of Clinal Genetic Diversity and Potential Colonization Pathways in Two Species of Western Atlantic Fiddler Crabs.

PubMed

Laurenzano, Claudia; Costa, Tânia M; Schubart, Christoph D

2016-01-01

Fiddler crabs (Brachyura, Ocypodidae), like many other marine organisms, disperse via planktonic larvae. A lengthy pelagic larval duration is generally assumed to result in genetic connectivity even among distant populations. However, major river outflows, such as of the Amazon or Orinoco, or strong currents may act as phylogeographic barriers to ongoing gene flow. For example, the Mona Passage, located between Puerto Rico and Hispaniola, has been postulated to impair larval exchange of several species. In this study, Cox1 mtDNA data was used to analyze population genetic structure of two fiddler crab species from the western Atlantic, comparing the continental coastline and Caribbean islands. The results indicate genetic homogeneity in Minuca rapax among Atlantic (continental) populations (Suriname, Brazil), whereas Caribbean populations show significantly restricted gene flow among the constituent islands and towards continental populations. Our data support the hypothesis of the Mona Passage hindering larval exchange. Contrastingly, Caribbean Leptuca leptodactyla populations appear to be devoid of detectable variation, while Atlantic-continental (i.e. Brazilian) populations show much higher haplotype and nucleotide diversities and display slight genetic differentiation among populations within the Atlantic region, though not statistically significant. Both species show a pronounced divergence between regions, supporting the presence of a phylogeographic barrier.

Contrasting Patterns of Clinal Genetic Diversity and Potential Colonization Pathways in Two Species of Western Atlantic Fiddler Crabs

PubMed Central

Laurenzano, Claudia; Costa, Tânia M.; Schubart, Christoph D.

2016-01-01

Fiddler crabs (Brachyura, Ocypodidae), like many other marine organisms, disperse via planktonic larvae. A lengthy pelagic larval duration is generally assumed to result in genetic connectivity even among distant populations. However, major river outflows, such as of the Amazon or Orinoco, or strong currents may act as phylogeographic barriers to ongoing gene flow. For example, the Mona Passage, located between Puerto Rico and Hispaniola, has been postulated to impair larval exchange of several species. In this study, Cox1 mtDNA data was used to analyze population genetic structure of two fiddler crab species from the western Atlantic, comparing the continental coastline and Caribbean islands. The results indicate genetic homogeneity in Minuca rapax among Atlantic (continental) populations (Suriname, Brazil), whereas Caribbean populations show significantly restricted gene flow among the constituent islands and towards continental populations. Our data support the hypothesis of the Mona Passage hindering larval exchange. Contrastingly, Caribbean Leptuca leptodactyla populations appear to be devoid of detectable variation, while Atlantic-continental (i.e. Brazilian) populations show much higher haplotype and nucleotide diversities and display slight genetic differentiation among populations within the Atlantic region, though not statistically significant. Both species show a pronounced divergence between regions, supporting the presence of a phylogeographic barrier. PMID:27861598

Impact of small mammal predators on gypsy moth

Treesearch

Joseph S. Elkinton; Harvey R. Smith; Andrew M. Liebhold

1991-01-01

Research in western Massachusetts, on Cape Cod, and on Bryant Mountain in Vermont conducted over the past decade has confirmed the importance of mortality during the late larval and pupal stages to gypsy moth population dynamics.

Spawning behavior in Atlantic cod: analysis by use of data storage tags

USGS Publications Warehouse

Grabowski, Timothy B.; Thorsteinsson, Vilhjalmur; Marteinsdóttir, Gudrún

2014-01-01

 Electronic data storage tags (DSTs) were implanted into Atlantic cod captured in Icelandic waters from 2002 to 2007 and the depth profiles recovered from these tags (females: n = 31, males: n = 27) were used to identify patterns consistent with published descriptions of cod courtship and spawning behavior. The individual periods of time that males spent exhibiting behavior consistent with being present in a spawning aggregation—i.e. periods consisting of a clear tidal signature in the DST depth profile associated with an individual remaining on or near the substrate—were longer than those of females. Over the course of a spawning season, male cod spent approximately twice the amount of time in spawning aggregations than females, but female cod visited more aggregations per unit time. On average, males participated in approximately 57% more putative spawning events, i.e. vertical ascents potentially corresponding to gamete release, than did females. However, males <85 cm total length participated in the same number of putative spawning events as females of comparable size. In both sexes, larger individuals and/or individuals that spent a longer period of time within an aggregation participated in a larger number of putative spawning events. Although further validation and refinement is necessary, particularly in the identification of spawning events, the ability offered by DSTs to quantify cod spawning behavior may aid in the development of management and conservation plans.

Offshore wind farms as productive sites or ecological traps for gadoid fishes?--impact on growth, condition index and diet composition.

PubMed

Reubens, Jan T; Vandendriessche, Sofie; Zenner, Annemie N; Degraer, Steven; Vincx, Magda

2013-09-01

With the construction of wind farms all across the North Sea, numerous artificial reefs are created. These windmill artificial reefs (WARs) harbour high abundances of fish species which can be attracted from elsewhere or can be the result of extra production induced by these wind farms. To resolve the attraction-production debate in suddenly altered ecosystems (cf. wind farms), the possible consequences of attraction should be assessed; thereby bearing in mind that ecological traps may arise. In this paper we investigated whether the wind farms in the Belgian part of the North Sea act as ecological traps for pouting and Atlantic cod. Length-at-age, condition and diet composition of fish present at the windmill artificial reefs was compared to local and regional sandy areas. Fish data from the period 2009-2012 were evaluated. Mainly I- and II-group Atlantic cod were present around the WARs; while the 0- and I-group dominated for pouting. For Atlantic cod, no differences in length were observed between sites, indicating that fitness was comparable at the WARs and in sandy areas. No significant differences in condition index were observed for pouting. At the WARs, they were slightly larger and stomach fullness was enhanced compared to the surrounding sandy areas. Also diet differed considerably among the sites. The outcome of the proxies indicate that fitness of pouting was slightly enhanced compared to the surrounding sandy areas. No evidence was obtained supporting the hypothesis that the WARs act as an ecological trap for Atlantic cod and pouting. Copyright © 2013 Elsevier Ltd. All rights reserved.

Earth observations taken from shuttle orbiter Atlantis during STS-84 mission

NASA Image and Video Library

1997-07-09

STS084-703-003 (15-24 May 1997) --- Cape Cod extends 105 kilometers (65 miles) into the Atlantic Ocean. To the south of Cape Cod are the islands of Martha's Vineyard (west) and Nantucket (east). The city of Boston can be seen surrounding the bay above the "hook" on Cape Cod. To the south are the cities of New Bedford on Buzzards Bay, and Providence, Rhode Island. The Cape Cod Canal is an artificial waterway that connects Buzzards Bay and Cape Cod Bay. The waterway is 28 kilometers (17.5 miles) and does not contains locks. The canal was built to shorten the distance over water between New York City and Boston. In 1620 the Pilgrims landed at Provincetown, on the upper tip of Cape Cod, before they proceeded to Plymouth.

LATITUDINAL GRADIENTS IN BENTHIC COMMUNITY COMPOSITION IN WESTERN ATLANTIC ESTUARIES

EPA Science Inventory

The community structure of benthic macroinvertebrates from estuaries along the Atlantic coast of North America from Cape Cod, MA, to Biscayne Bay, FL, were compared. Benthic data were collected over a 5 year period (1990 to 1995) by the U.S. Environmental Protection Agency's Envi...

Characterization of the spawning habitat of Atlantic bluefin tuna and related species in the Balearic Sea (western Mediterranean)

NASA Astrophysics Data System (ADS)

Alemany, F.; Quintanilla, L.; Velez-Belchí, P.; García, A.; Cortés, D.; Rodríguez, J. M.; Fernández de Puelles, M. L.; González-Pola, C.; López-Jurado, J. L.

2010-07-01

Within the framework of the TUNIBAL project that focused on Atlantic bluefin tuna ( Thunnus thynnus) larval ecology, ichthyoplankton surveys were conducted from 2001 to 2005 off the Balearic archipelago, which is recognized as one of the main spawning areas of the eastern Atlantic stock of this species. In each survey, a regular sampling grid of about 200 stations, 10 nautical miles apart were sampled. CTD casts and oblique Bongo 60 and surface Bongo 90 plankton tows were carried out. The occurrence frequencies of Atlantic bluefin tuna, albacore tuna ( Thunnus alalunga) and bullet tuna ( Auxis rochei) larvae in quantitative Bongo 60 samples were 0.14, 0.29 and 0.49 respectively. Mean larval abundances in these positive samples were relatively high: 31 larvae 10 m -2 for Atlantic bluefin tuna, 17 for albacore tuna and 31 for bullet tuna. All species had patchy distributions since more than 90% of the stations showed larval densities under 10 larvae 100 m -3 (70% showed even less than 2 larvae 100 m -3), whereas in some isolated spots, we recorded abundances as high as 867 (Atlantic bluefin) or 872 (bullet tuna) larvae 10 m -2. These results allowed us to relate larval distribution to mesoscale hydrographic features and to characterize the spawning habitat of these species. Single Quotient Parameter analyses were applied to spatial (depth), physical (temperature, salinity, dissolved oxygen and geostrophic current velocities) and biological (mesozooplankton biomass) variables to determine the environmental preferences of each species for spawning. Results showed that the complex hydrodynamic scenarios around the Balearic Islands, due to the interaction between the inflowing surface Atlantic water masses (AW) and Mediterranean surface waters (MW), play a key role in determining the abundance and distribution of tuna larvae in this area, especially in the case of Atlantic bluefin tuna. Spawning of this species seems to take place mainly in offshore mixed waters, as suggested by their preferences for waters with salinities between 36.9 and 37.7, located near frontal areas in the confluence of AW and MW. Atlantic bluefin tuna start to spawn once sea surface temperatures (SST) are over 20.5 °C, and preferentially in the range of 21.5-26.5 °C. Its larval distribution suggests that spawners reach the Balearic Sea in association with the inflowing AW. However, bullet tuna and albacore tuna larvae, species whose Mediterranean stocks stay in this sea year round, had a more widespread distribution and were found both in MW and AW. Bullet tuna starts to spawn in shallower waters near the shelf break once the SST reaches 19 °C, and shows significant preferences for waters over 23.5 °C. Similar to Atlantic bluefin tuna, albacore tuna spawn in offshore waters, but its spawning peak is later than its congeneric species, since it has a significant preference for even warmer waters, over 27 °C.

ECOLOGICAL CONDITION OF THE ESTUARIES OF THE ATLANTIC AND GULF COASTS OF THE UNITED STATES.

EPA Science Inventory

Monitoring the estuaries of the Atlantic and Gulf of Mexico coastlines from Cape Cod, MA to Brownsville, TX was performed annually from 1990-1997 to assess ecological conditions on a regional basis for four biogeographic provinces. These province estimates - Virginian, Carolinia...

CHARACTERIZATION OF WESTERN NORTH ATLANTIC RIGHT WHALE SPRING FEEDING HABITAT

EPA Science Inventory

The Great South Channel region of the southwestern Gulf of Maine, between George's Bank and Cape Cod, is the primary spring feeding ground for the western North Atlantic population of the I northern right whale, E. glacialis .Since this whale is so endangered, it is critical to i...

78 FR 35217 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; American Lobster Fishery

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-12

.... 080219213-3470-01] RIN 0648-AT31 Atlantic Coastal Fisheries Cooperative Management Act Provisions; American... lobster trap fishery in Lobster Conservation Management Area 2 (Federal nearshore waters in Southern New England; Area 2), and in the Outer Cape Cod Lobster Conservation Management Area (Federal nearshore waters...

Distribution and diet of larval and juvenile Arctic cod ( Boreogadus saida) in the shallow Canadian Beaufort Sea

NASA Astrophysics Data System (ADS)

Walkusz, Wojciech; Paulic, Joclyn E.; Williams, William J.; Kwasniewski, Slawomir; Papst, Michael H.

2011-02-01

The distribution and diet of larval and juvenile Arctic cod ( Boreogadus saida) were studied during summer 2005 in the coastal Canadian Beaufort Sea. A total of 275 individuals were captured and the highest abundance was observed at station depths of 20-30 m. This corresponds well with the location of the frontal zone where the Mackenzie River plume water and open sea water meet. Diet examinations were performed on 220 Arctic cod, which were found undamaged from sampling. We observed a gradual decrease in prey number per fish and increase in prey size as larvae grew which corresponded to a shift from Rotifera and nauplii towards larger copepodid stages. However, at all sizes, the larvae remain generalists and feed on a broad range of organisms. Environmental changes due to climate warming could have a two-fold impact on fish larvae feeding in the studied region. First, the potential for increased primary production may lead to increased zooplankton production that may impact the feeding and nutrition positively. On the other hand, greater discharge of turbid water from the Mackenzie River may reduce light penetration in the water column that may negatively influence the ability of visual predators to successively forage.

Causes and projections of abrupt climate-driven ecosystem shifts in the North Atlantic.

PubMed

Beaugrand, Grégory; Edwards, Martin; Brander, Keith; Luczak, Christophe; Ibanez, Frederic

2008-11-01

Warming of the global climate is now unequivocal and its impact on Earth' functional units has become more apparent. Here, we show that marine ecosystems are not equally sensitive to climate change and reveal a critical thermal boundary where a small increase in temperature triggers abrupt ecosystem shifts seen across multiple trophic levels. This large-scale boundary is located in regions where abrupt ecosystem shifts have been reported in the North Atlantic sector and thereby allows us to link these shifts by a global common phenomenon. We show that these changes alter the biodiversity and carrying capacity of ecosystems and may, combined with fishing, precipitate the reduction of some stocks of Atlantic cod already severely impacted by exploitation. These findings offer a way to anticipate major ecosystem changes and to propose adaptive strategies for marine exploited resources such as cod in order to minimize social and economic consequences.

Rested and stressed farmed Atlantic cod (Gadus morhua) chilled in ice or slurry and effects on quality.

PubMed

Digre, Hanne; Erikson, Ulf; Aursand, Ida G; Gallart-Jornet, Lorena; Misimi, Ekrem; Rustad, Turid

2011-01-01

The main objectives of this study were to investigate (1) whether rested harvest of farmed cod was better maintained by chilling with slurry rather than by traditional ice storage, (2) whether chilling with slurry would be a feasible chilling method to assure low core temperatures (≤0 °C) at packing of gutted fish, and (3) the effects of superchilling compared with traditional ice on selected quality parameters of cod during storage. In the experiment, seawater slurry at -2.0 ± 0.3 °C was used. Anesthetized (AQUI-S™), percussion stunned, and stressed cod chilled in slurry were compared. Cod stored on ice were used as reference group. The fish were evaluated at the day of slaughter, and after 7 and 14 d of storage according to handling stress (initial muscle pH, muscle twitches, rigor mortis), core temperatures, quality index method, microbial counts, weight changes, salt and water content, water distribution, pH, adenosine triphosphate-degradation products, K-value, water-holding capacity, fillet color, and texture. Chilling cod in slurry was more rapid than chilling in ice. Prechilling (1 d) of cod in slurry before subsequent ice storage resulted in lower quality 7 d postmortem compared with both ice and continuous slurry storage. The potential advantages of superchilling became more prominent after 14 d with lower microbiological activity, better maintenance of freshness (lower total quality index scores and lower K-values) compared with fish stored on ice. A drawback with slurry-stored fish was that cloudy eyes developed earlier, in addition to weight gain and salt uptake compared to ice-stored fish. Practical Application: Chilling is an essential operation in any fish-processing plant. This manuscript addresses different applications of slurry ice in the processing and storage of Atlantic cod. Cod quality was assessed after 7 and 14 d of iced and superchilled storage.

Levels of synthetic antioxidants (ethoxyquin, butylated hydroxytoluene and butylated hydroxyanisole) in fish feed and commercially farmed fish.

PubMed

Lundebye, A-K; Hove, H; Måge, A; Bohne, V J B; Hamre, K

2010-12-01

Several synthetic antioxidants are authorized for use as feed additives in the European Union. Ethoxyquin (EQ) and butylated hydroxytoluene (BHT) are generally added to fish meal and fish oil, respectively, to limit lipid oxidation. The study was conducted to examine the concentrations of EQ, BHT and butylated hydroxyanisole (BHA) in several commercially important species of farmed fish, namely Atlantic salmon, halibut and cod and rainbow trout, as well as concentrations in fish feed. The highest levels of BHT, EQ and BHA were found in farmed Atlantic salmon fillets, and were 7.60, 0.17 and 0.07 mg kg(-1), respectively. The lowest concentrations of the synthetic antioxidants found were in cod. The concentration of the oxidation product ethoxyquin dimer (EQDM) was more than ten-fold higher than the concentration of parent EQ in Atlantic salmon halibut and rainbow trout, whereas this dimer was not detected in cod fillets. The theoretical consumer exposure to the synthetic antioxidants EQ, BHA and BHT from the consumption of farmed fish was calculated. The contribution of EQ from a single portion (300 g) of skinned fillets of the different species of farmed fish would contribute at most 15% of the acceptable daily intake (ADI) for a 60 kg adult. The consumption of farmed fish would not contribute measurably to the intake of BHA; however, a 300 g portion of farmed Atlantic salmon would contribute up to 75% of the ADI for BHT.

Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). Bay Anchovy

DTIC Science & Technology

1989-02-01

Mexico coasts, from Cape Cod, species of anchovies have been Massachusetts, to Yucatan , Mexico recorded from the Mid-Atlantic Region, (Hildebrand 1963...bay anchovies were food web (Figure 3). It is an apparently unaffected by water important source of nutrition for many temperatures exceeding 32 0 C

Ecological Condition of Coastal Ocean Waters Along the U.S. Mid-Atlantic Bight: 2006

EPA Science Inventory

This report presents the results of an assessment of ecological condition in coastal-ocean waters of the U.S. mid-Atlantic Bight (MAB), along the U.S. continental shelf from Cape Cod, MA and Nantucket Shoals to the northeast to Cape Hatteras to the south, based on sampling conduc...

Harvesting Atlantic Cod under Climate Variability

NASA Astrophysics Data System (ADS)

Oremus, K. L.

2016-12-01

Previous literature links the growth of a fishery to climate variability. This study uses an age-structured bioeconomic model to compare optimal harvest in the Gulf of Maine Atlantic cod fishery under a variable climate versus a static climate. The optimal harvest path depends on the relationship between fishery growth and the interest rate, with higher interest rates dictating greater harvests now at the cost of long-term stock sustainability. Given the time horizon of a single generation of fishermen under assumptions of a static climate, the model finds that the economically optimal management strategy is to harvest the entire stock in the short term and allow the fishery to collapse. However, if the biological growth of the fishery is assumed to vary with climate conditions, such as the North Atlantic Oscillation, there will always be pulses of high growth in the stock. During some of these high-growth years, the growth of the stock and its economic yield can exceed the growth rate of the economy even under high interest rates. This implies that it is not economically optimal to exhaust the New England cod fishery if NAO is included in the biological growth function. This finding may have theoretical implications for the management of other renewable yet exhaustible resources whose growth rates are subject to climate variability.

Thermal growth potential of Atlantic cod by the end of the 21st century.

PubMed

Butzin, Martin; Pörtner, Hans-Otto

2016-12-01

Ocean warming may lead to smaller body sizes of marine ectotherms, because metabolic rates increase exponentially with temperature while the capacity of the cardiorespiratory system to match enhanced oxygen demands is limited. Here, we explore the impact of rising sea water temperatures on Atlantic cod (Gadus morhua), an economically important fish species. We focus on changes in the temperature-dependent growth potential by a transfer function model combining growth observations with climate model ensemble temperatures. Growth potential is expressed in terms of asymptotic body weight and depends on water temperature. We consider changes between the periods 1985-2004 and 2081-2100, assuming that future sea water temperatures will evolve according to climate projections for IPCC AR5 scenario RCP8.5. Our model projects a response of Atlantic cod to future warming, differentiated according to ocean regions, leading to increases of asymptotic weight in the Barents Sea, while weights are projected to decline at the southern margin of the biogeographic range. Southern spawning areas will disappear due to thermal limitation of spawning stages. These projections match the currently observed biogeographic shifts and the temperature- and oxygen-dependent decline in routine aerobic scope at southern distribution limits. © 2016 John Wiley & Sons Ltd.

Juvenile Atlantic cod behavior appears robust to near-future CO2 levels.

PubMed

Jutfelt, Fredrik; Hedgärde, Maria

2015-01-01

Ocean acidification caused by the anthropogenic release of CO2 is considered a major threat to marine ecosystems. One unexpected impact of elevated water CO2 levels is that behavioral alterations may occur in tropical reef fish and certain temperate fish species. These effects appear to alter many different types of sensory and cognitive functions; if widespread and persistent, they have the potential to cause ecosystem changes. We investigated whether economically and ecologically important Atlantic cod also display behavioral abnormalities by exposing 52 juvenile cod to control conditions (500 μatm, duplicate tanks) or an end-of-the-century ocean acidification scenario (1000 μatm, duplicate tanks) for one month, during which time the fish were examined for a range of behaviors that have been reported to be affected by elevated CO2 in other fish. The behaviors were swimming activity, as measured by number of lines crossed per minute, the emergence from shelter, determined by how long it took the fish to exit a shelter after a disturbance, relative lateralization (a measure of behavioral turning side preference), and absolute lateralization (the strength of behavioral symmetry). We found no effect of CO2 treatment on any of the four behaviors tested: activity (F = 1.61, p = 0.33), emergence from shelter (F = 0.13, p = 0.76), relative lateralization (F = 2.82, p = 0.50), and absolute lateralization (F = 0.80, p = 0.26). Our results indicate that the behavior of Atlantic cod could be resilient to the impacts of near-future levels of water CO2.

TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods.

PubMed

Fox, C J; Taylor, M I; Pereyra, R; Villasana, M I; Rico, C

2005-03-01

Recent substantial declines in northeastern Atlantic cod stocks necessitate improved biological knowledge and the development of techniques to complement standard stock assessment methods (which largely depend on accurate commercial catch data). In 2003, an ichthyoplankton survey was undertaken in the Irish Sea and subsamples of 'cod-like' eggs were analysed using a TaqMan multiplex, PCR (polymerase chain reaction) assay (with specific probes for cod, haddock and whiting). The TaqMan method was readily applied to the large number of samples (n = 2770) generated during the survey and when combined with a manual DNA extraction protocol had a low failure rate of 6%. Of the early stage 'cod-like' eggs (1.2-1.75 mm diameter) positively identified: 34% were cod, 8% haddock and 58% whiting. As previous stock estimates based on egg surveys for Irish Sea cod assumed that the majority of 'cod-like' eggs were from cod, the TaqMan results confirm that there was probably substantial contamination by eggs of whiting and haddock that would have inflated estimates of the stock biomass.

Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua).

PubMed

Hasselberg, Linda; Meier, Sonnich; Svardal, Asbjørn; Hegelund, Tove; Celander, Malin C

2004-05-12

Alkylphenols are continuously released into the ocean as a result of offshore oil production. Alkylphenols, including 4-tert-butylphenol (C4), 4n-pentylphenol (C5), 4n-hexylphenol (C6), and 4n-heptylphenol (C7), up to 237 ppb concentrations, have been detected in produced water from oil platforms. Previous studies have shown that alkylphenols induce vitellogenesis in fish. Atlantic cod (Gadus morhua) of both sexes were force-fed with various doses ranging between 0.02 and 80 ppm of a mixture of alkylphenols (C4:C5:C6:C7 ratio 1:1:1:1) or 5 ppm 17 beta-estradiol. We investigated effects on hepatic CYP1A and CYP3A protein expression in protein blots, using antibodies against scup (Stenotomus chrysops) CYP1A1 and rainbow trout (Oncorhynchus mykiss) CYP3A. There was a sexually dimorphic expression of CYP1A and CYP3A protein levels, with females expressing higher levels than males. Treatment of male Atlantic cod with 17 beta-estradiol resulted in increased CYP1A and CYP3A protein levels. Exposure to alkylphenols resulted in a dose-dependent increase of CYP1A and CYP3A protein expression in males, but not in females. However, this increase of CYP1A protein levels was not reflected on the CYP1A-mediated ethoxyresorufin-O-deethylase (EROD) activity, implying that alkylphenols inhibited the CYP1A enzyme activity in vivo. In vitro inhibition studies with pooled liver microsomes from Atlantic cod confirmed that the alkylphenols mixture efficiently inhibited the CYP1A activity (IC50=10 microM), although the inhibitory effect of each individual alkylphenol varied. The IC50 values for each individual alkylphenol on the CYP1A activity were, in a descending order of magnitude: [C7>C6>C5>C4], ranging from 12 to 300 microM with decreased length of the 4-alkyl chain. The effect of alkylphenols on the CYP3A activity in vitro in liver microsomes also was investigated, using the fluorescent 7-benzyloxy-4-[trifluoromethyl]-coumarin (BFC) as a diagnostic CYP3A substrate. The alkylphenol mixture inhibited CYP3A activity with IC50 value at 100 microM. The IC50 values for each individual alkylphenol on CYP3A activity were, in a descending order of magnitude: [C5>C6>C7>C4], ranging between 60 and 250 microM. Taken together, our results show that the alkylphenol mixture and 17 beta-estradiol resulted in elevated hepatic CYP1A and CYP3A expression in male Atlantic cod. The alkylphenol mixture strongly inhibited CYP1A activities, whereas it weakly inhibited CYP3A activity in Atlantic cod liver microsomes in vitro. In addition, 17 beta-estradiol was a weak inhibitor of CYP3A activity (IC50=75 microM) and did not notably inhibit the CYP1A activity in vitro.

Historical changes in genotypic frequencies at the Pantophysin locus in Atlantic cod (Gadus morhua) in Icelandic waters: evidence of fisheries-induced selection?

PubMed Central

Jakobsdóttir, Klara B; Pardoe, Heidi; Magnússon, Árni; Björnsson, Höskuldur; Pampoulie, Christophe; Ruzzante, Daniel E; Marteinsdóttir, Guðrún

2011-01-01

The intense fishing mortality imposed on Atlantic cod in Icelandic waters during recent decades has resulted in marked changes in stock abundance, as well as in age and size composition. Using a molecular marker known to be under selection (Pan I) along with a suite of six neutral microsatellite loci, we analysed an archived data set and revealed evidence of distinct temporal changes in the frequencies of genotypes at the Pan I locus among spawning Icelandic cod, collected between 1948 and 2002, a period characterized by high fishing pressure. Concurrently, temporal stability in the composition of the microsatellite loci was established within the same data set. The frequency of the Pan IBB genotype decreased over a period of six decades, concomitant with considerable spatial and technical changes in fishing effort that resulted in the disappearance of older individuals from the fishable stock. Consequently, these changes have likely led to a change in the genotype frequencies at this locus in the spawning stock of Icelandic cod. The study highlights the value of molecular genetic approaches that combine functional and neutral markers examined in the same set of individuals for investigations of the selective effects of harvesting and reiterates the need for an evolutionary dimension to fisheries management. PMID:25568005

Cod Collapse and Climate in the North Atlantic

NASA Astrophysics Data System (ADS)

Oremus, K. L.; Meng, K. C.; Gaines, S.

2016-02-01

Understanding the determinants of fish population dynamics is crucial to the recovery of many fisheries. Current research emphasizes the role of environmental conditions in driving fish populations, but the magnitude of and mechanisms behind these effects on crucial populations are not well established. Despite aggressive management efforts, New England cod fisheries have been in decline for several decades and have now reached unprecedented lows. We find a strong negative relationship between the North Atlantic Oscillation (NAO) and subsequent adult cod biomass and catch. In the Gulf of Maine fishery, a 1-unit NAO increase is associated with a 13% decrease in the biomass of age-1 cod the following year, a decrease that persists as the affected cohort matures. We further detect that a 1-unit NAO increase can lower commercial catch for up to 19 subsequent years, suggesting that fishing practices may be inadvertently exacerbating NAO's direct biological effects. These results imply that 18% and 32% of the overall decline in adult biomass and catch, respectively, since 1980 can be attributed to the NAO's recent multi-decadal positive phase. The Georges Bank cod fishery displays similar patterns. Because there is a delay between an NAO event and subsequent declines in adult biomass, our finding implies that already observed NAO events can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fisheries strongly affected by natural and anthropogenic climatic variation.

Constant proportion harvest policies: dynamic implications in the Pacific halibut and Atlantic cod fisheries.

PubMed

Yakubu, Abdul-Aziz; Li, Nianpeng; Conrad, Jon M; Zeeman, Mary-Lou

2011-07-01

Overfishing, pollution and other environmental factors have greatly reduced commercially valuable stocks of fish. In a 2006 Science article, a group of ecologists and economists warned that the world may run out of seafood from natural stocks if overfishing continues at current rates. In this paper, we explore the interaction between a constant proportion harvest policy and recruitment dynamics. We examine the discrete-time constant proportion harvest policy discussed in Ang et al. (2009) and then expand the framework to include stock-recruitment functions that are compensatory and overcompensatory, both with and without the Allee effect. We focus on constant proportion policies (CPPs). CPPs have the potential to stabilize complex overcompensatory stock dynamics, with or without the Allee effect, provided the rates of harvest stay below a threshold. If that threshold is exceeded, CPPs are known to result in the sudden collapse of a fish stock when stock recruitment exhibits the Allee effect. In case studies, we analyze CPPs as they might be applied to Gulf of Alaska Pacific halibut fishery and the Georges Bank Atlantic cod fishery based on harvest rates from 1975 to 2007. The best fit models suggest that, under high fishing mortalities, the halibut fishery is vulnerable to sudden population collapse while the cod fishery is vulnerable to steady decline to zero. The models also suggest that CPP with mean harvesting levels from the last 30 years can be effective at preventing collapse in the halibut fishery, but these same policies would lead to steady decline to zero in the Atlantic cod fishery. We observe that the likelihood of collapse in both fisheries increases with increased stochasticity (for example, weather variability) as predicted by models of global climate change. Copyright © 2011 Elsevier Inc. All rights reserved.

Cardiovascular and haematological responses of Atlantic cod (Gadus morhua) to acute temperature increase.

PubMed

Gollock, M J; Currie, S; Petersen, L H; Gamperl, A K

2006-08-01

For fish to survive large acute temperature increases (i.e. >10.0 degrees C) that may bring them close to their critical thermal maximum (CTM), oxygen uptake at the gills and distribution by the cardiovascular system must increase to match tissue oxygen demand. To examine the effects of an acute temperature increase ( approximately 1.7 degrees C h(-1) to CTM) on the cardiorespiratory physiology of Atlantic cod, we (1) carried out respirometry on 10.0 degrees C acclimated fish, while simultaneously measuring in vivo cardiac parameters using Transonic probes, and (2) constructed in vitro oxygen binding curves on whole blood from 7.0 degrees C acclimated cod at a range of temperatures. Both cardiac output (Q) and heart rate (fh) increased until near the fish's CTM (22.2+/-0.2 degrees C), and then declined rapidly. Q(10) values for Q and fh were 2.48 and 2.12, respectively, and increases in both parameters were tightly correlated with O(2) consumption. The haemoglobin (Hb)-oxygen binding curve at 24.0 degrees C showed pronounced downward and rightward shifts compared to 20.0 degrees C and 7.0 degrees C, indicating that both binding capacity and affinity decreased. Further, Hb levels were lower at 24.0 degrees C than at 20.0 degrees C and 7.0 degrees C. This was likely to be due to cell swelling, as electrophoresis of Hb samples did not suggest protein denaturation, and at 24.0 degrees C Hb samples showed peak absorbance at the expected wavelength (540 nm). Our results show that cardiac function is unlikely to limit metabolic rate in Atlantic cod from Newfoundland until close to their CTM, and we suggest that decreased blood oxygen binding capacity may contribute to the plateau in oxygen consumption.

Inventory of Selected Freshwater-Ecology Studies From the New England Coastal Basins (Maine, New Hampshire, Massachusetts, Rhode Island), 1937-1997

DTIC Science & Technology

1999-01-01

plains. The Atlantic Coastal Pine Barrens ecoregion is represented in the southeastern part of the study unit and includes Cape Cod and the islands...Providence, Washington 1The area of the NECB study unit within the Atlantic Coastal Pine Barrens ecoregion had previously been part of the Northeastern...Unit are the Northeastern Highlands, Northeastern Coastal Zone, and Atlantic Coastal Pine Barrens1 (U.S. Environ- mental Protection Agency-National

Trophic structure of the Barents Sea fish assemblage with special reference to the cod stock recoverability

NASA Astrophysics Data System (ADS)

Dolgov, Andrey V.

2009-04-01

The species composition and trophic structure of the Barents Sea fish assemblage is analysed based on data from research survey trawls and diet analyses of various species. Atlantic cod was the dominant fish species encountered, accounting for more than 55% by abundance or biomass. Only five fish species (long rough dab, thorny skate, Greenland halibut, deepwater redfish and saithe) were sufficiently abundant to be considered as possible food competitors with cod in the Barents Sea. However, possible trophic competition is not high, due to low spatial and temporal overlap between cod and these other species. Analyses of fish assemblages and trophic structures of the Barents Sea and other areas (North Sea, Western Greenland, Newfoundland-Labrador shelf) suggest that Barents Sea cod is the only cod stock for which the ability to recover may not be restricted by trophic relations among fishes, due to a lack of other abundant predatory species and low potential for competition caused by spatial-temporal changes.

Variation in organic matter and water color in Lake Mälaren during the past 70 years.

PubMed

Johansson, L; Temnerud, J; Abrahamsson, J; Berggren Kleja, D

2010-03-01

Interest in long time series of organic matter data has recently increased due to concerns about the effects of global climate change on aquatic ecosystems. This study presents and evaluates unique time series of chemical oxygen demand (COD) and water color from Lake Malaren, Sweden, stretching almost seven decades (1935-2004). A negative linear trend was found in COD, but not in water color. The decrease was mainly due to installation of sewage works around 1970. Time series of COD and water color had cyclic pattern. It was strongest for COD, with 23 years periodicity. Similar periodicity observed in air temperature and precipitation in Sweden has been attributed to the North Atlantic Oscillation index and solar system orbit, suggesting that COD in Lake Mälaren is partly derived from algae. Discharge influenced water color more than COD, possibly because water color consists of colored substances brought into the lake from surrounding soils.

Recruitment of shrimp ( Pandalus borealis) in the Barents Sea related to spawning stock and environment

NASA Astrophysics Data System (ADS)

Aschan, Michaela; Ingvaldsen, Randi

2009-10-01

The shrimp spawn in autumn, and the females carry their eggs as out roe until spring when the larvae hatch. Within a period of 2 months the shrimp larvae settle to the bottom. It has been claimed that the year-class strength probably is determined during the larval phase. Today's assessment and forecast of the shrimp stock productivity and potential fishing yields are weak. This is partly due to poor knowledge on population dynamics from hatching until the shrimp are caught in the fishery at the age of 3 or 4 years. We, therefore, here identify the most important abiotic and biotic factors that affect recruitment in addition to spawning stock biomass. Since 1995, a net attached to the underbelly of the survey trawl used at the annual cruise in the Barents Sea has caught juvenile shrimp. The abundance of settled shrimp larvae varies in time and space. The recruitment to the fishery has been quite stable with the exception of the 1996 year-class, which was observed as 1-year-olds but has not been registered since. The temporal pattern of the three youngest year-classes is studied in relation to abiotic factors such as sea temperature, ice index and North Atlantic Oscillation, as well as biotic factors such as spawning stock biomass and presence of copepods, euphausiids and predating cod. Recruitment indices and factors identified by the Spearmann correlation to be significantly correlated with recruitment were used as input in a principal component analysis (PCA) and a generalized additive model (GAM) was applied. Abundance of 1-year-old shrimp is positively correlated to spawning stock biomass the previous year and to temperature of the previous winter, and negatively correlated with the number of 1-year-old cod. Two-year-old shrimp show significant correlation with temperature, whereas there is a strong negative correlation with euphausiids. Three-year-old shrimp are significantly correlated with the number of 2-year-old shrimp the previous year but negatively correlated to temperature at sampling time. This is probably due to less overlap with the main predator cod when cold. Ricker functions indicate an increased density-dependent mortality with age. When predicting the recruitment of shrimp to the fishery, the spawning stock biomass, the abundance of cod and euphausiids, as well as the temperature should be included.

Energy profiling of demersal fish: a case-study in wind farm artificial reefs.

PubMed

De Troch, Marleen; Reubens, Jan T; Heirman, Elke; Degraer, Steven; Vincx, Magda

2013-12-01

The construction of wind farms introduces artificial hard substrates in sandy sediments. As Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) tend to aggregate in order to feed around these reefs, energy profiling and trophic markers were applied to study their feeding ecology in a wind farm in the Belgian part of the North Sea. The proximate composition (carbohydrates, proteins and lipids) differed significantly between liver and muscle tissue but not between fish species or between their potential prey species. Atlantic cod showed to consume more energy than pouting. The latter had a higher overall energy reserve and can theoretically survive twice as long on the available energy than cod. In autumn, both fish species could survive longer on their energy than in spring. Polyunsaturated fatty acids were found in high concentrations in fish liver. The prey species Jassa and Pisidia were both rich in EPA while Jassa had a higher DHA content than Pisidia. Energy profiling supported the statement that wind farm artificial reefs are suitable feeding ground for both fish species. Sufficient energy levels were recorded and there is no indication of competition.

Size-dependent social attraction and repulsion explains the decision of Atlantic cod Gadus morhua to enter baited pots.

PubMed

Anders, N; Fernö, A; Humborstad, O-B; Løkkeborg, S; Rieucau, G; Utne-Palm, A C

2017-12-01

The present study tested whether the presence of already retained fishes inside baited fish pots acted as a social attraction and affected the entrance probability of Atlantic cod Gadus morhua in a fjord in northern Norway. Video analysis revealed that the probability of an entrance initially increased with the presence of low numbers of fishes inside the pot, but subsequently decreased at a critical number of caught fishes. The critical number was dependent on the size of the G. morhua attempting to enter. This demonstrates that social attraction and repulsion play a role in G. morhua pot fishing and has important implications for the capture efficiency of fisheries executed with pots. © 2017 The Fisheries Society of the British Isles.

Discrimination between weaned and unweaned Atlantic cod (Gadus morhua) in capture-based aquaculture (CBA) by X-ray imaging and radio-frequency metal detector.

PubMed

Misimi, Ekrem; Martinsen, Svein; Mathiassen, John Reidar; Erikson, Ulf

2014-01-01

The aim of this study was to investigate the feasibility of two detection methods for use in discrimination and sorting of adult Atlantic cod (about 2 kg) in the small scale capture-based aquaculture (CBA). Presently, there is no established method for discrimination of weaned and unweaned cod in CBA. Generally, 60-70% of the wild-caught cod in the CBA are weaned into commercial dry feed. To increase profitability for the fish farmers, unweaned cod must be separated from the stock, meaning the fish must be sorted into two groups - unweaned and weaned from moist feed. The challenges with handling of large numbers of fish in cages, defined the limits of the applied technology. As a result, a working model was established, focusing on implementing different marking materials added to the fish feed, and different technology for detecting the feed presence in the fish gut. X-ray imaging in two modes (planar and dual energy band) and sensitive radio-frequency metal detection were the detection methods that were chosen for the investigations. Both methods were tested in laboratory conditions using dead fish with marked feed inserted into the gut cavity. In particular, the sensitive radio-frequency metal detection method with carbonyl powder showed very promising results in detection of marked feed. Results show also that Dual energy band X-ray imaging may have potential for prediction of fat content in the feed. Based on the investigations it can be concluded that both X-ray imaging and sensitive radio-frequency metal detector technology have the potential for detecting cod having consumed marked feed. These are all technologies that may be adapted to large scale handling of fish from fish cages. Thus, it may be possible to discriminate between unweaned and weaned cod in a large scale grading situation. Based on the results of this study, a suggestion for evaluation of concept for in-situ sorting system is presented.

Effects of alkylphenols on redox status in first spawning Atlantic cod (Gadus morhua).

PubMed

Hasselberg, Linda; Meier, Sonnich; Svardal, Asbjørn

2004-07-30

Offshore oil production releases large amounts of lipophilic compounds in produced water and into the ocean. The discharge of produced water from the Norwegian petroleum sector has increased from 26 million m3 in 1993 to 120 million m3 in 2001, and it continues to increase. Produced water contains significant amounts of alkylphenols, which have been reported to be estrogenic, causing endocrine disruption in fish. In year 2000, approximately 44 tons of alkylphenols were released on the Norwegian continental shelf in connection with discharge of produced water. Except from being estrogenic, relatively little is known about the effects of alkylphenols when released in the marine environment. Our objective was to study how alkylphenols affect the redox status in first spawning Atlantic cod (Gadus morhua) of both sexes. Model compounds tested included 4-tert-butylphenol (C4), 4-n-pentylphenol (C5), 4-n-hexylphenol (C6) and 4-n-heptylphenol (C7), all found in produced water. First spawning Atlantic cod were force-fed a mixture of these four alkylphenols, ranging between 0.02 and 80 ppm or 5 ppm 17beta-estradiol (E2), for 1 or 4 weeks. Increased hepatic total glutathione concentration in response to alkylphenol exposure was detected in female fish compared to control group after 1-week exposure, an effect not seen after 4 weeks. Furthermore, hepatic total glutathione concentration was sex dependent, where male fish sampled after 4 weeks had higher levels of glutathione than female fish. Increased glutathione reductase catalytic activities in both male and female fish were seen after exposure to 0.02 ppm alkylphenol mixture in 4 weeks. The glutathione S-transferase activity was only affected in male fish exposed to 0.02 ppm alkylphenols, and glucose-6-phosphate dehydrogenase activity increased in female fish exposed to 0.02 ppm alkylphenol mixture for 1 week. The increase of hepatic total glutathione content as well as the effects on glutathione reductase activities suggests that alkylphenol exposure affects the redox status in Atlantic cod. Copyright 2004 Elsevier B.V.

A Day in the Life of Fish Larvae: Modeling Foraging and Growth Using Quirks

PubMed Central

Huebert, Klaus B.; Peck, Myron A.

2014-01-01

This article introduces “Quirks,” a generic, individual-based model synthesizing over 40 years of empirical and theoretical insights into the foraging behavior and growth physiology of marine fish larvae. In Quirks, different types of larvae are defined by a short list of their biological traits, and all foraging and growth processes (including the effects of key environmental factors) are modeled following one unified set of mechanistic rules. This approach facilitates ecologically meaningful comparisons between different species and environments. We applied Quirks to model young exogenously feeding larvae of four species: 5.5-mm European anchovy (Engraulis encrasicolus), 7-mm Atlantic cod (Gadus morhua), 13-mm Atlantic herring (Clupea harengus), and 7-mm European sprat (Sprattus sprattus). Modeled growth estimates explained the majority of variability among 53 published empirical growth estimates, and displayed very little bias: 0.65%±1.2% d−1 (mean ± standard error). Prey organisms of ∼67% the maximum ingestible prey length were optimal for all larval types, in terms of the expected ingestion per encounter. Nevertheless, the foraging rate integrated over all favorable prey sizes was highest when smaller organisms made up >95% of the prey biomass under the assumption of constant normalized size spectrum slopes. The overall effect of turbulence was consistently negative, because its detrimental influence on prey pursuit success exceeded its beneficial influence on prey encounter rate. Model sensitivity to endogenous traits and exogenous environmental factors was measured and is discussed in depth. Quirks is free software and open source code is provided. PMID:24901937

Comment on “Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery”

NASA Astrophysics Data System (ADS)

Palmer, Michael C.; Deroba, Jonathan J.; Legault, Christopher M.; Brooks, Elizabeth N.

2016-04-01

Pershing et al. (Reports, 13 November, p. 809) concluded that failure to account for temperature in the assessment and management of Gulf of Maine Atlantic cod caused overfishing. We argue that the “extra mortality” calculation driving this conclusion is an artifact. Environmental factors affect all stocks, but attribution of additional mortality to temperature alone by Pershing et al. is unsupported by the data.

Lobster and cod benefit from small-scale northern marine protected areas: inference from an empirical before–after control-impact study

PubMed Central

Moland, Even; Olsen, Esben Moland; Knutsen, Halvor; Garrigou, Pauline; Espeland, Sigurd Heiberg; Kleiven, Alf Ring; André, Carl; Knutsen, Jan Atle

2013-01-01

Marine protected areas (MPAs) are increasingly implemented as tools to conserve and manage fisheries and target species. Because there are opportunity costs to conservation, there is a need for science-based assessment of MPAs. Here, we present one of the northernmost documentations of MPA effects to date, demonstrated by a replicated before–after control-impact (BACI) approach. In 2006, MPAs were implemented along the Norwegian Skagerrak coast offering complete protection to shellfish and partial protection to fish. By 2010, European lobster (Homarus gammarus) catch-per-unit-effort (CPUE) had increased by 245 per cent in MPAs, whereas CPUE in control areas had increased by 87 per cent. Mean size of lobsters increased by 13 per cent in MPAs, whereas increase in control areas was negligible. Furthermore, MPA-responses and population development in control areas varied significantly among regions. This illustrates the importance of a replicated BACI design for reaching robust conclusions and management decisions. Partial protection of Atlantic cod (Gadus morhua) was followed by an increase in population density and body size compared with control areas. By 2010, MPA cod were on average 5 cm longer than in any of the control areas. MPAs can be useful management tools in rebuilding and conserving portions of depleted lobster populations in northern temperate waters, and even for a mobile temperate fish species such as the Atlantic cod. PMID:23303544

Forecasting the major influences of predation and environment on cod recovery in the northern Gulf of St. Lawrence.

PubMed

Bousquet, Nicolas; Chassot, Emmanuel; Duplisea, Daniel E; Hammill, Mike O

2014-01-01

The northern Gulf of St. Lawrence (NGSL) stock of Atlantic cod (Gadus morhua), historically the second largest cod population in the Western Atlantic, has known a severe collapse during the early 1990 s and is currently considered as endangered by the Committee on the Status of Endangered Wildlife in Canada. As for many fish populations over the world which are currently being heavily exploited or overfished, urgent management actions in the form of recovery plans are needed for restoring this stock to sustainable levels. Stochastic projections based on a statistical population model incorporating predation were conducted over a period of 30 years (2010-2040) to assess the expected outcomes of alternative fishing strategies on the stock recovery under different scenarios of harp seal (Pagophilus groenlandicus) abundance and environmental conditions. This sensitivity study shows that water temperature is key in the rebuilding of the NGSL cod stock. Model projections suggest that maintaining the current management practice under cooler water temperatures is likely to maintain the species in an endangered status. Under current or warmer conditions in the Gulf of St. Lawrence, partial recovery might only be achieved by significant reductions in both fishing and predation pressure. In the medium-term, a management strategy that reduces catch could be favoured over a complete moratorium so as to minimize socio-economic impacts on the industry.

Forecasting the Major Influences of Predation and Environment on Cod Recovery in the Northern Gulf of St. Lawrence

PubMed Central

Bousquet, Nicolas; Chassot, Emmanuel; Duplisea, Daniel E.; Hammill, Mike O.

2014-01-01

The northern Gulf of St. Lawrence (NGSL) stock of Atlantic cod (Gadus morhua), historically the second largest cod population in the Western Atlantic, has known a severe collapse during the early 1990 s and is currently considered as endangered by the Committee on the Status of Endangered Wildlife in Canada. As for many fish populations over the world which are currently being heavily exploited or overfished, urgent management actions in the form of recovery plans are needed for restoring this stock to sustainable levels. Stochastic projections based on a statistical population model incorporating predation were conducted over a period of 30 years (2010–2040) to assess the expected outcomes of alternative fishing strategies on the stock recovery under different scenarios of harp seal (Pagophilus groenlandicus) abundance and environmental conditions. This sensitivity study shows that water temperature is key in the rebuilding of the NGSL cod stock. Model projections suggest that maintaining the current management practice under cooler water temperatures is likely to maintain the species in an endangered status. Under current or warmer conditions in the Gulf of St. Lawrence, partial recovery might only be achieved by significant reductions in both fishing and predation pressure. In the medium-term, a management strategy that reduces catch could be favoured over a complete moratorium so as to minimize socio-economic impacts on the industry. PMID:24523852

Multiple-locus, variable number of tandem repeat analysis (MLVA) of the fish-pathogen Francisella noatunensis

PubMed Central

2011-01-01

Background Since Francisella noatunensis was first isolated from cultured Atlantic cod in 2004, it has emerged as a global fish pathogen causing disease in both warm and cold water species. Outbreaks of francisellosis occur in several important cultured fish species making a correct management of this disease a matter of major importance. Currently there are no vaccines or treatments available. A strain typing system for use in studies of F. noatunensis epizootics would be an important tool for disease management. However, the high genetic similarity within the Francisella spp. makes strain typing difficult, but such typing of the related human pathogen Francisella tullarensis has been performed successfully by targeting loci with higher genetic variation than the traditional signature sequences. These loci are known as Variable Numbers of Tandem Repeat (VNTR). The aim of this study is to identify possible useful VNTRs in the genome of F. noatunensis. Results Seven polymorphic VNTR loci were identified in the preliminary genome sequence of F. noatunensis ssp. noatunensis GM2212 isolate. These VNTR-loci were sequenced in F. noatunensis isolates collected from Atlantic cod (Gadus morhua) from Norway (n = 21), Three-line grunt (Parapristipoma trilineatum) from Japan (n = 1), Tilapia (Oreochromis spp.) from Indonesia (n = 3) and Atlantic salmon (Salmo salar) from Chile (n = 1). The Norwegian isolates presented in this study show both nine allelic profiles and clades, and that the majority of the farmed isolates belong in two clades only, while the allelic profiles from wild cod are unique. Conclusions VNTRs can be used to separate isolates belonging to both subspecies of F. noatunensis. Low allelic diversity in F. noatunensis isolates from outbreaks in cod culture compared to isolates wild cod, indicate that transmission of these isolates may be a result of human activity. The sequence based MLVA system presented in this study should provide a good starting point for further development of a genotyping system that can be used in studies of epizootics and disease management of francisellosis. PMID:21261955

Norway

Atmospheric Science Data Center

2013-04-17

... of the North Sea region. Fishing remains one of the most important occupations in coastal Norway. Gadus morhua (Atlantic Cod) and ... NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Science Mission Directorate, Washington, D.C. The Terra spacecraft is managed ...

Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany

PubMed Central

Star, Bastiaan; Boessenkool, Sanne; Gondek, Agata T.; Nikulina, Elena A.; Hufthammer, Anne Karin; Pampoulie, Christophe; Knutsen, Halvor; André, Carl; Nistelberger, Heidi M.; Dierking, Jan; Petereit, Christoph; Heinrich, Dirk; Jakobsen, Kjetill S.; Stenseth, Nils Chr.; Jentoft, Sissel

2017-01-01

Knowledge of the range and chronology of historic trade and long-distance transport of natural resources is essential for determining the impacts of past human activities on marine environments. However, the specific biological sources of imported fauna are often difficult to identify, in particular if species have a wide spatial distribution and lack clear osteological or isotopic differentiation between populations. Here, we report that ancient fish-bone remains, despite being porous, brittle, and light, provide an excellent source of endogenous DNA (15–46%) of sufficient quality for whole-genome reconstruction. By comparing ancient sequence data to that of modern specimens, we determine the biological origin of 15 Viking Age (800–1066 CE) and subsequent medieval (1066–1280 CE) Atlantic cod (Gadus morhua) specimens from excavation sites in Germany, Norway, and the United Kingdom. Archaeological context indicates that one of these sites was a fishing settlement for the procurement of local catches, whereas the other localities were centers of trade. Fish from the trade sites show a mixed ancestry and are statistically differentiated from local fish populations. Moreover, Viking Age samples from Haithabu, Germany, are traced back to the North East Arctic Atlantic cod population that has supported the Lofoten fisheries of Norway for centuries. Our results resolve a long-standing controversial hypothesis and indicate that the marine resources of the North Atlantic Ocean were used to sustain an international demand for protein as far back as the Viking Age. PMID:28784790

Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany.

PubMed

Star, Bastiaan; Boessenkool, Sanne; Gondek, Agata T; Nikulina, Elena A; Hufthammer, Anne Karin; Pampoulie, Christophe; Knutsen, Halvor; André, Carl; Nistelberger, Heidi M; Dierking, Jan; Petereit, Christoph; Heinrich, Dirk; Jakobsen, Kjetill S; Stenseth, Nils Chr; Jentoft, Sissel; Barrett, James H

2017-08-22

Knowledge of the range and chronology of historic trade and long-distance transport of natural resources is essential for determining the impacts of past human activities on marine environments. However, the specific biological sources of imported fauna are often difficult to identify, in particular if species have a wide spatial distribution and lack clear osteological or isotopic differentiation between populations. Here, we report that ancient fish-bone remains, despite being porous, brittle, and light, provide an excellent source of endogenous DNA (15-46%) of sufficient quality for whole-genome reconstruction. By comparing ancient sequence data to that of modern specimens, we determine the biological origin of 15 Viking Age (800-1066 CE) and subsequent medieval (1066-1280 CE) Atlantic cod ( Gadus morhua ) specimens from excavation sites in Germany, Norway, and the United Kingdom. Archaeological context indicates that one of these sites was a fishing settlement for the procurement of local catches, whereas the other localities were centers of trade. Fish from the trade sites show a mixed ancestry and are statistically differentiated from local fish populations. Moreover, Viking Age samples from Haithabu, Germany, are traced back to the North East Arctic Atlantic cod population that has supported the Lofoten fisheries of Norway for centuries. Our results resolve a long-standing controversial hypothesis and indicate that the marine resources of the North Atlantic Ocean were used to sustain an international demand for protein as far back as the Viking Age.

Biodiversity and Temporal Distribution of Immature Culicidae in the Atlantic Forest, Rio de Janeiro State, Brazil

PubMed Central

de Mello, Cecília Ferreira; Guimarães, Anthony Érico; Gil-Santana, Hélcio R.; Gleiser, Raquel M.

2016-01-01

To increase the knowledge of biodiversity and identify larval habitats used by immature mosquitoes in the Atlantic Forest, we conducted a study in areas with various stages of preservation within the Guapiaçu Ecological Reserve in Cachoeiras de Macacu, Rio de Janeiro state. The Culicidae fauna were sampled during February, April, June, August, October, and December 2012; February, March, April, May, June, August, October, and December 2013; and January and March 2014. Immature mosquitoes were collected with dippers and suction tubes (mouth aspirators). Over the sampling period, 2697 larvae of 56 species were collected, some of which are recognized vectors of human diseases. The larval mosquito community found in artificial habitats, temporary ground water, and phytotelmata differed between sites, except for the mosquito fauna in bromeliads, which were almost 80% similar. Species segregation was more evident between larval habitats than between sites. Culex usquatus was the dominant species and colonized the highest number of larval habitats. The artificial larval habitats found in REGUA were colonized by a great diversity of species and high abundance as well, thus human artifacts left by the public in the area that collect water may promote an increase in mosquito populations. Among the species collected, some are known or suspected vectors of pathogens to humans and/or veterinary relevance, and their medical relevance is discussed. PMID:27404496

EFFECTS OF 17B-ESTRADIOL, ATRAZINE, AND NONYLPHENOL ON THE SEX RATIOS OF THE ATLANTIC SILVERSIDE, MENIDIA MENIDIA

EPA Science Inventory

The gender of the common estuarine fish, Atlantic silverside (Menidia menidia), is determined by temperature during early larval development. Under laboratory conditions, the ratio of males to females was determined to be 80:20 at 25o C and 20:80 at 15o C. This study used thi...

Use of hydrolysates from Atlantic cod (Gadus morhua L.) viscera as a complex nitrogen source for lactic acid bacteria.

PubMed

Aspmo, Stein Ivar; Horn, Svein Jarle; Eijsink, Vincent G H

2005-07-01

Hydrolysates of cod viscera were tested as an alternative to commonly used complex nitrogen sources (peptones and/or extracts) for the type strains of the lactic acid bacteria Lactococcus lactis, Lactobacillus acidophilus, Lactobacillus helveticus, Lactobacillus casei, Lactobacillus sakei and Pediococcus pentosaceus. Comparative studies with MRS-like media containing different nitrogen sources showed that all the fish hydrolysates performed equally well or better than commercial extracts/peptones for all selected lactic acid bacteria.

Evidence of segregated spawning in a single marine fish stock: Sympatric divergence of ecotypes in icelandic cod?

USGS Publications Warehouse

Grabowski, T.B.; Thorsteinsson, Vilhjalmur; McAdam, B.J.; Marteinsdottir, G.

2011-01-01

There is increasing recognition of intraspecific diversity and population structure within marine fish species, yet there is little direct evidence of the isolating mechanisms that maintain it or documentation of its ecological extent. We analyzed depth and temperature histories collected by electronic data storage tags retrieved from 104 Atlantic cod at liberty ???1 year to evaluate a possible isolating mechanisms maintaining population structure within the Icelandic cod stock. This stock consists of two distinct behavioral types, resident coastal cod and migratory frontal cod, each occurring within two geographically distinct populations. Despite being captured together on the same spawning grounds, we show the behavioral types seem reproductively isolated by fine-scale differences in spawning habitat selection, primarily depth. Additionally, the different groups occupied distinct seasonal thermal and bathymetric niches that generally demonstrated low levels of overlap throughout the year. Our results indicate that isolating mechanisms, such as differential habitat selection during spawning, might contribute to maintaining diversity and fine-scale population structure in broadcast-spawning marine fishes.

Larvae from deep-sea methane seeps disperse in surface waters.

PubMed

Arellano, Shawn M; Van Gaest, Ahna L; Johnson, Shannon B; Vrijenhoek, Robert C; Young, Craig M

2014-07-07

Many species endemic to deep-sea methane seeps have broad geographical distributions, suggesting that they produce larvae with at least episodic long-distance dispersal. Cold-seep communities on both sides of the Atlantic share species or species complexes, yet larval dispersal across the Atlantic is expected to take prohibitively long at adult depths. Here, we provide direct evidence that the long-lived larvae of two cold-seep molluscs migrate hundreds of metres above the ocean floor, allowing them to take advantage of faster surface currents that may facilitate long-distance dispersal. We collected larvae of the ubiquitous seep mussel "Bathymodiolus" childressi and an associated gastropod, Bathynerita naticoidea, using remote-control plankton nets towed in the euphotic zone of the Gulf of Mexico. The timing of collections suggested that the larvae might disperse in the water column for more than a year, where they feed and grow to more than triple their original sizes. Ontogenetic vertical migration during a long larval life suggests teleplanic dispersal, a plausible explanation for the amphi-Atlantic distribution of "B." mauritanicus and the broad western Atlantic distribution of B. naticoidea. These are the first empirical data to demonstrate a biological mechanism that might explain the genetic similarities between eastern and western Atlantic seep fauna. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Variation in larval properties of the Atlantic brooding coral Porites astreoides between different reef sites in Bermuda

NASA Astrophysics Data System (ADS)

de Putron, Samantha J.; Lawson, Julia M.; White, Kascia Q. L.; Costa, Matthew T.; Geronimus, Miriam V. B.; MacCarthy, Anne

2017-06-01

Recent research has documented phenotypic differences among larvae released from corals with a brooding reproductive mode, both among species and within broods from a single species. We studied larvae released from the common Atlantic coral Porites astreoides in Bermuda to further evaluate phenotypic variability. Inter-site differences were investigated in larvae from conspecifics at a rim and patch reef site. Larvae were collected daily for one lunar cycle from several colonies per site each year over 5 yr. Larval volume varied with reef site of origin, with colonies from the rim reef site producing larger larvae than colonies from the patch reef site. This inter-site variation in larval size could not be explained by corallite size and may be a response to different environmental conditions at the sites. Larvae from both reef sites also varied in size depending on lunar day of release over 4 yr of study. Regardless of site of origin, smaller larvae were released earlier in the lunar cycle. Over 1 yr of study, lipid and zooxanthellae content and settlement success after 48 h covaried with larval size. However, there may be a trade-off between larger larvae and reduced fecundity. Overall, larvae released from colonies from the rim reef site were larger and had greater settlement success than those from colonies from the patch reef site. This study documents larval phenotypic variability and a distinct inter-site difference in larval ecology among conspecifics within the same geographic area, which may have implications for recruitment success, population dynamics, and resilience.

Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres.

PubMed

Kuuliala, L; Al Hage, Y; Ioannidis, A-G; Sader, M; Kerckhof, F-M; Vanderroost, M; Boon, N; De Baets, B; De Meulenaer, B; Ragaert, P; Devlieghere, F

2018-04-01

During fish spoilage, microbial metabolism leads to the production of volatile organic compounds (VOCs), characteristic off-odors and eventual consumer rejection. The aim of the present study was to contribute to the development of intelligent packaging technologies by identifying and quantifying VOCs that indicate spoilage of raw Atlantic cod (Gadus morhua) under atmospheres (%v/v CO 2 /O 2 /N 2 ) 60/40/0, 60/5/35 and air. Spoilage was examined by microbiological, chemical and sensory analyses over storage time at 4 or 8 °C. Selected-ion flow-tube mass spectrometry (SIFT-MS) was used for quantifying selected VOCs and amplicon sequencing of the 16S rRNA gene was used for the characterization of the cod microbiota. OTUs classified within the Photobacterium genus increased in relative abundance over time under all storage conditions, suggesting that Photobacterium contributed to spoilage and VOC production. The onset of exponential VOC concentration increase and sensory rejection occurred at high total plate counts (7-7.5 log). Monitoring of early spoilage thus calls for sensitivity for low VOC concentrations. Copyright © 2017 Elsevier Ltd. All rights reserved.

Atlantic cod actively avoid CO2 and predator odour, even after long-term CO2 exposure.

PubMed

Jutfelt, Fredrik; Hedgärde, Maria

2013-12-27

The rising atmospheric CO2 level is continuously driving the dissolution of more CO2 into the oceans, and some emission scenarios project that the surface waters may reach 1000 μatm by the end of the century. It is not known if fish can detect moderately elevated CO2 levels, and if they avoid areas with high CO2. If so, avoidance behaviour to water with high CO2 could affect movement patterns and migrations of fish in the future. It is also being increasingly recognized that fish behaviour can be altered by exposure to CO2. Therefore this study investigated how long-term exposure to elevated pCO2 affects predator avoidance and CO2 avoidance in juvenile Atlantic cod (Gadus morhua). The fish were exposed to control water or CO2-enriched water (1000 μatm) for six weeks before being subjected to tests of behaviour. Despite long term exposure to elevated pCO2 the cod still strongly avoided the smell of a predator. These data are surprising because several coral reef fish have demonstrated reversal of olfactory responses after CO2 exposure, turning avoidance of predator cues into preference for predator cues. Fish from both treatment groups also demonstrated strong avoidance of CO2 when presented with the choice of control or CO2-acidified water, indicating that habituation to the CO2 sensory stimuli is negligible. As Atlantic cod maintained normal behavioural responses to olfactory cues, they may be tolerant to CO2-induced behavioural changes. The results also suggest that despite the long-term exposure to CO2-acidified water, the fish still preferred the control water over CO2-acidified water. Therefore, in the future, fish may alter their movements and migrations in search of waters with a lower CO2 content.

Atlantic cod actively avoid CO2 and predator odour, even after long-term CO2 exposure

PubMed Central

2013-01-01

Introduction The rising atmospheric CO2 level is continuously driving the dissolution of more CO2 into the oceans, and some emission scenarios project that the surface waters may reach 1000 μatm by the end of the century. It is not known if fish can detect moderately elevated CO2 levels, and if they avoid areas with high CO2. If so, avoidance behaviour to water with high CO2 could affect movement patterns and migrations of fish in the future. It is also being increasingly recognized that fish behaviour can be altered by exposure to CO2. Therefore this study investigated how long-term exposure to elevated pCO2 affects predator avoidance and CO2 avoidance in juvenile Atlantic cod (Gadus morhua). The fish were exposed to control water or CO2-enriched water (1000 μatm) for six weeks before being subjected to tests of behaviour. Results Despite long term exposure to elevated pCO2 the cod still strongly avoided the smell of a predator. These data are surprising because several coral reef fish have demonstrated reversal of olfactory responses after CO2 exposure, turning avoidance of predator cues into preference for predator cues. Fish from both treatment groups also demonstrated strong avoidance of CO2 when presented with the choice of control or CO2-acidified water, indicating that habituation to the CO2 sensory stimuli is negligible. Conclusions As Atlantic cod maintained normal behavioural responses to olfactory cues, they may be tolerant to CO2-induced behavioural changes. The results also suggest that despite the long-term exposure to CO2-acidified water, the fish still preferred the control water over CO2-acidified water. Therefore, in the future, fish may alter their movements and migrations in search of waters with a lower CO2 content. PMID:24373523

Evidence from data storage tags for the presence of lunar and semilunar behavioral cycles in spawning Atlantic cod

USGS Publications Warehouse

Grabowski, Timothy B.; McAdam, Bruce J.; Thorsteinsson, Vilhjalmur; Marteinsdóttir, Gudrún

2015-01-01

Understanding the environmental processes determining the timing and success of reproduction is of critical importance to developing effective management strategies of marine fishes. Unfortunately it has proven difficult to comprehensively study the reproductive behavior of broadcast-spawning fishes. The use of electronic data storage tags (DSTs) has the potential to provide insights into the behavior of fishes. These tags allow for data collection over relatively large spatial and temporal scales that can be correlated to predicted environmental conditions and ultimately be used to refine predictions of year class strength. In this paper we present data retrieved from DSTs demonstrating that events putatively identified as Atlantic cod spawning behavior is tied to a lunar cycle with a pronounced semi-lunar cycle within it. Peak activity occurs around the full and new moon with no evidence of relationship with day/night cycles.

Climate-driven ichthyoplankton drift model predicts growth of top predator young.

PubMed

Myksvoll, Mari S; Erikstad, Kjell E; Barrett, Robert T; Sandvik, Hanno; Vikebø, Frode

2013-01-01

Climate variability influences seabird population dynamics in several ways including access to prey near colonies during the critical chick-rearing period. This study addresses breeding success in a Barents Sea colony of common guillemots Uria aalge where trophic conditions vary according to changes in the northward transport of warm Atlantic Water. A drift model was used to simulate interannual variations in transport of cod Gadus morhua larvae along the Norwegian coast towards their nursery grounds in the Barents Sea. The results showed that the arrival of cod larvae from southern spawning grounds had a major effect on the size of common guillemot chicks at fledging. Furthermore, the fraction of larvae from the south was positively correlated to the inflow of Atlantic Water into the Barents Sea thus clearly demonstrating the mechanisms by which climate-driven bottom-up processes influence interannual variations in reproductive success in a marine top predator.

Climate-Driven Ichthyoplankton Drift Model Predicts Growth of Top Predator Young

PubMed Central

Myksvoll, Mari S.; Erikstad, Kjell E.; Barrett, Robert T.; Sandvik, Hanno; Vikebø, Frode

2013-01-01

Climate variability influences seabird population dynamics in several ways including access to prey near colonies during the critical chick-rearing period. This study addresses breeding success in a Barents Sea colony of common guillemots Uria aalge where trophic conditions vary according to changes in the northward transport of warm Atlantic Water. A drift model was used to simulate interannual variations in transport of cod Gadus morhua larvae along the Norwegian coast towards their nursery grounds in the Barents Sea. The results showed that the arrival of cod larvae from southern spawning grounds had a major effect on the size of common guillemot chicks at fledging. Furthermore, the fraction of larvae from the south was positively correlated to the inflow of Atlantic Water into the Barents Sea thus clearly demonstrating the mechanisms by which climate-driven bottom-up processes influence interannual variations in reproductive success in a marine top predator. PMID:24265761

Oil droplet fouling and differential toxicokinetics of polycyclic aromatic hydrocarbons in embryos of Atlantic haddock and cod.

PubMed

Sørensen, Lisbet; Sørhus, Elin; Nordtug, Trond; Incardona, John P; Linbo, Tiffany L; Giovanetti, Laura; Karlsen, Ørjan; Meier, Sonnich

2017-01-01

The impact of crude oil pollution on early life stages (ELS) of fish, including larvae and embryos, has received considerable attention in recent years. Of the organic components present in crude oil, polycyclic aromatic hydrocarbons (PAHs) are considered the main class of compounds responsible for toxic effects in marine organisms. Although evidence suggests that they are more toxic, alkylated PAHs remain much less studied than their unsubstituted congeners. Recently, it was established that embryos of Atlantic haddock (Melanogrammus aeglefinus) are particularly sensitive to dispersed crude oil, and it was hypothesized that this was caused by direct interaction with crude oil droplets, which adhered to the chorion of exposed embryos. Such a phenomenon would increase the potential for uptake of less water-soluble compounds, including alkylated PAHs. In the current study, we compared the uptake of parent and alkylated PAHs in Atlantic cod (Gadus morhua) and haddock embryos exposed to dispersed crude oil at a range of environmentally relevant concentrations (10-600 μg oil/liter seawater). Although the species are biologically very similar, the cod chorion does not become fouled with oil droplets, even when the two species are exposed to dispersions of crude oil droplets under similar conditions. A close correlation between the degree of fouling and toxicological response (heart defects, craniofacial malformation) was observed. Oil droplet fouling in haddock led to both quantitative and qualitative differences in PAH uptake. Finally, kinetic data on a large suite of PAHs showed differential elimination, suggesting differential metabolism of unsubstituted versus alkylated compounds.

Quantitative proteomics analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153.

PubMed

Yadetie, Fekadu; Oveland, Eystein; Døskeland, Anne; Berven, Frode; Goksøyr, Anders; Karlsen, Odd André

2017-04-01

PCB 153 is one of the most abundant PCB congeners detected in biological samples. It is a persistent compound that is still present in the environment despite the ban on production and use of PCBs in the late 1970s. It has strong tendencies to bioaccumulate and biomagnify in biota, and studies have suggested that it is an endocrine and metabolic disruptor. In order to study mechanisms of toxicity, we exposed Atlantic cod (Gadus morhua) to various doses of PCB 153 (0, 0.5, 2 and 8mg/kg body weight) for two weeks and examined the effects on expression of liver proteins using label-free quantitative proteomics. Label-free liquid chromatography-mass spectrometry analysis of the liver proteome resulted in the quantification of 1272 proteins, of which 78 proteins were differentially regulated in the PCB 153-treated dose groups compared to the control group. Functional enrichment analysis showed that pathways significantly affected are related to lipid metabolism, cytoskeletal remodeling, cell cycle and cell adhesion. Importantly, the main effects appear to be on lipid metabolism, with up-regulation of enzymes in the de novo fatty acid synthesis pathway, consistent with previous transcriptomics results. Increased plasma triglyceride levels were also observed in the PCB 153 treated fish, in agreement with the induction of the lipogenic genes and proteins. The results suggest that PCB 153 perturbs lipid metabolism in the Atlantic cod liver. Elevated levels of lipogenic enzymes and plasma triglycerides further suggest increased synthesis of fatty acids and triglycerides. Copyright © 2017 Elsevier B.V. All rights reserved.

Oil droplet fouling and differential toxicokinetics of polycyclic aromatic hydrocarbons in embryos of Atlantic haddock and cod

PubMed Central

Sørhus, Elin; Nordtug, Trond; Incardona, John P.; Linbo, Tiffany L.; Giovanetti, Laura; Karlsen, Ørjan; Meier, Sonnich

2017-01-01

The impact of crude oil pollution on early life stages (ELS) of fish, including larvae and embryos, has received considerable attention in recent years. Of the organic components present in crude oil, polycyclic aromatic hydrocarbons (PAHs) are considered the main class of compounds responsible for toxic effects in marine organisms. Although evidence suggests that they are more toxic, alkylated PAHs remain much less studied than their unsubstituted congeners. Recently, it was established that embryos of Atlantic haddock (Melanogrammus aeglefinus) are particularly sensitive to dispersed crude oil, and it was hypothesized that this was caused by direct interaction with crude oil droplets, which adhered to the chorion of exposed embryos. Such a phenomenon would increase the potential for uptake of less water-soluble compounds, including alkylated PAHs. In the current study, we compared the uptake of parent and alkylated PAHs in Atlantic cod (Gadus morhua) and haddock embryos exposed to dispersed crude oil at a range of environmentally relevant concentrations (10–600 μg oil/liter seawater). Although the species are biologically very similar, the cod chorion does not become fouled with oil droplets, even when the two species are exposed to dispersions of crude oil droplets under similar conditions. A close correlation between the degree of fouling and toxicological response (heart defects, craniofacial malformation) was observed. Oil droplet fouling in haddock led to both quantitative and qualitative differences in PAH uptake. Finally, kinetic data on a large suite of PAHs showed differential elimination, suggesting differential metabolism of unsubstituted versus alkylated compounds. PMID:28678887

Species detection using HyBeacon(®) probe technology: Working towards rapid onsite testing in non-human forensic and food authentication applications.

PubMed

Dawnay, Nick; Hughes, Rebecca; Court, Denise Syndercombe; Duxbury, Nicola

2016-01-01

Identifying individual species or determining species' composition in an unknown sample is important for a variety of forensic applications. Food authentication, monitoring illegal trade in endangered species, forensic entomology, sexual assault case work and counter terrorism are just some of the fields that can require the detection of the biological species present. Traditional laboratory based approaches employ a wide variety of tools and technologies and exploit a number of different species specific traits including morphology, molecular differences and immuno-chemical analyses. A large number of these approaches require laboratory based apparatus and results can take a number of days to be returned to investigating authorities. Having a presumptive test for rapid identification could lead to savings in terms of cost and time and allow sample prioritisation if confirmatory testing in a laboratory is required later. This model study describes the development of an assay using a single HyBeacon(®) probe and melt curve analyses allowing rapid screening and authentication of food products labelled as Atlantic cod (Gadus morhua). Exploiting melt curve detection of species specific SNP sites on the COI gene the test allows detection of a target species (Atlantic cod) and closely related species which may be used as substitutes. The assay has been designed for use with the Field Portable ParaDNA system, a molecular detection platform for non-expert users. The entire process from sampling to result takes approximately 75min. Validation studies were performed on both single source genomic DNA, mixed genomic DNA and commercial samples. Data suggests the assay has a lower limit of detection of 31 pg DNA. The specificity of the assay to Atlantic cod was measured by testing highly processed food samples including frozen, defrosted and cooked fish fillets as well as fish fingers, battered fish fillet and fish pie. Ninety-six (92.7%) of all Atlantic cod food products, tested, provided a correct single species result with the remaining samples erroneously identified as containing non-target species. The data shows that the assay was quick to design and characterise and is also capable of yielding results that would be beneficial in a variety of fields, not least the authentication of food. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Computer vision-based evaluation of pre- and postrigor changes in size and shape of Atlantic cod (Gadus morhua) and Atlantic salmon (Salmo salar) fillets during rigor mortis and ice storage: effects of perimortem handling stress.

PubMed

Misimi, E; Erikson, U; Digre, H; Skavhaug, A; Mathiassen, J R

2008-03-01

The present study describes the possibilities for using computer vision-based methods for the detection and monitoring of transient 2D and 3D changes in the geometry of a given product. The rigor contractions of unstressed and stressed fillets of Atlantic salmon (Salmo salar) and Atlantic cod (Gadus morhua) were used as a model system. Gradual changes in fillet shape and size (area, length, width, and roundness) were recorded for 7 and 3 d, respectively. Also, changes in fillet area and height (cross-section profiles) were tracked using a laser beam and a 3D digital camera. Another goal was to compare rigor developments of the 2 species of farmed fish, and whether perimortem stress affected the appearance of the fillets. Some significant changes in fillet size and shape were found (length, width, area, roundness, height) between unstressed and stressed fish during the course of rigor mortis as well as after ice storage (postrigor). However, the observed irreversible stress-related changes were small and would hardly mean anything for postrigor fish processors or consumers. The cod were less stressed (as defined by muscle biochemistry) than the salmon after the 2 species had been subjected to similar stress bouts. Consequently, the difference between the rigor courses of unstressed and stressed fish was more extreme in the case of salmon. However, the maximal whole fish rigor strength was judged to be about the same for both species. Moreover, the reductions in fillet area and length, as well as the increases in width, were basically of similar magnitude for both species. In fact, the increases in fillet roundness and cross-section height were larger for the cod. We conclude that the computer vision method can be used effectively for automated monitoring of changes in 2D and 3D shape and size of fish fillets during rigor mortis and ice storage. In addition, it can be used for grading of fillets according to uniformity in size and shape, as well as measurement of fillet yield measured in thickness. The methods are accurate, rapid, nondestructive, and contact-free and can therefore be regarded as suitable for industrial purposes.

Seasonal and annual variation in the diet of Atlantic cod (Gadus morhua) in relation to the abundance of capelin (Mallotus villosus) off eastern Newfoundland, Canada

USGS Publications Warehouse

Methven, David A.; Piatt, John F.

1989-01-01

The importance of capelin as prey for cod has long been known (Thompson, 1943; and see Lilly (1987) for a review); however, no studies have been conducted on how the highly dynamic seasonal and yearly variations in capelin abundance affect cod diet. We studied the occurrence of capelin in cod stomachs in relation to the relative abundance of capelin at Witless Bay, Newfoundland (47°15’N 52°46’W), during June, July and August, 1982-1984. The mean number of capelin per stomach and the per cent occurrence of stomachs containing capelin were determined for each collection of stomachs. A total of 680 stomachs were examined. Cod were sampled from those caught in gillnets by fishermen and averaged 66 cm ± 8 (s.d.) in 1983 and 62 cm ± 8 (s.d.) in 1984. Relative abundance of capelin in the local habitat was determined by conducting hydroacoustic surveys around Gull Island in Witless Bay, the same area where cod were collected for stomach content analysis. Only hydroacoustic surveys conducted within three days of cod stomach collections were analyzed. Further details of hydroacoustic surveys including quantifications of acoustic echograms are described in Piatt (1989).

Rising water temperatures, reproduction and recruitment of an invasive oyster, Crassostrea gigas, on the French Atlantic coast.

PubMed

Dutertre, Mickaël; Beninger, Peter G; Barillé, Laurent; Papin, Mathias; Haure, Joël

2010-02-01

The recent appearance and invasion of feral oysters (Crassostrea gigas) along the northern European Atlantic coast, underscores the necessity to investigate the relationship between environmental variables, reproductive physiology, larval development and recruitment. We studied these relationships at both high (HT) and intermediate (IT) - turbidity sites, through historical data on water temperatures, multi-parameter environmental probes, histological analyses, and field collections of planktonic larvae and settled post-larvae in 2005 and 2006. A progressive warming trend was observed, especially since 1995, when oyster proliferation first became severe. Threshold temperatures for oocyte growth, larval development and settlement were achieved in both 2005 and 2006. The HT site showed greater numbers of larvae and post-larvae than the IT site for both years, with the highest numbers of post-larvae observed at both sites during the warmer summer of 2006. These results suggest that increased temperatures in northern European waters allow successful reproduction, larval development, and recruitment of C. gigas. High turbidity conditions further enhance this success. 2009 Elsevier Ltd. All rights reserved.

Harbour porpoises respond to climate change

PubMed Central

Heide-Jørgensen, Mads Peter; Iversen, Maria; Nielsen, Nynne Hjort; Lockyer, Christina; Stern, Harry; Ribergaard, Mads Hvid

2011-01-01

The effects of climate change on marine ecosystems and in particular on marine top predators are difficult to assess due to, among other things, spatial variability, and lack of clear delineation of marine habitats. The banks of West Greenland are located in a climate sensitive area and are likely to elicit pronounced responses to oceanographic changes in the North Atlantic. The recent increase in sea temperatures on the banks of West Greenland has had cascading effects on sea ice coverage, residency of top predators, and abundance of important prey species like Atlantic cod (Gadus morhua). Here, we report on the response of one of the top predators in West Greenland; the harbour porpoise (Phocoena phocoena). The porpoises depend on locating high densities of prey species with high nutritive value and they have apparently responded to the general warming on the banks of West Greenland by longer residence times, increased consumption of Atlantic cod resulting in improved body condition in the form of larger fat deposits in blubber, compared to the situation during a cold period in the 1990s. This is one of the few examples of a measurable effect of climate change on a marine mammal population. PMID:22393524

Harbour porpoises respond to climate change.

PubMed

Heide-Jørgensen, Mads Peter; Iversen, Maria; Nielsen, Nynne Hjort; Lockyer, Christina; Stern, Harry; Ribergaard, Mads Hvid

2011-12-01

The effects of climate change on marine ecosystems and in particular on marine top predators are difficult to assess due to, among other things, spatial variability, and lack of clear delineation of marine habitats. The banks of West Greenland are located in a climate sensitive area and are likely to elicit pronounced responses to oceanographic changes in the North Atlantic. The recent increase in sea temperatures on the banks of West Greenland has had cascading effects on sea ice coverage, residency of top predators, and abundance of important prey species like Atlantic cod (Gadus morhua). Here, we report on the response of one of the top predators in West Greenland; the harbour porpoise (Phocoena phocoena). The porpoises depend on locating high densities of prey species with high nutritive value and they have apparently responded to the general warming on the banks of West Greenland by longer residence times, increased consumption of Atlantic cod resulting in improved body condition in the form of larger fat deposits in blubber, compared to the situation during a cold period in the 1990s. This is one of the few examples of a measurable effect of climate change on a marine mammal population.

Genetic discontinuity among regional populations of Lophelia pertusa in the North Atlantic Ocean

USGS Publications Warehouse

Morrison, C.L.; Ross, Steve W.; Nizinski, M.S.; Brooke, S.; Jarnegren, J.; Waller, R.G.; Johnson, Robin L.; King, T.L.

2011-01-01

Knowledge of the degree to which populations are connected through larval dispersal is imperative to effective management, yet little is known about larval dispersal ability or population connectivity in Lophelia pertusa, the dominant framework-forming coral on the continental slope in the North Atlantic Ocean. Using nine microsatellite DNA markers, we assessed the spatial scale and pattern of genetic connectivity across a large portion of the range of L. pertusa in the North Atlantic Ocean. A Bayesian modeling approach found four distinct genetic groupings corresponding to ocean regions: Gulf of Mexico, coastal southeastern U.S., New England Seamounts, and eastern North Atlantic Ocean. An isolation-by-distance pattern was supported across the study area. Estimates of pairwise population differentiation were greatest with the deepest populations, the New England Seamounts (average F ST = 0.156). Differentiation was intermediate with the eastern North Atlantic populations (F ST = 0.085), and smallest between southeastern U.S. and Gulf of Mexico populations (F ST = 0.019), with evidence of admixture off the southeastern Florida peninsula. Connectivity across larger geographic distances within regions suggests that some larvae are broadly dispersed. Heterozygote deficiencies were detected within the majority of localities suggesting deviation from random mating. Gene flow between ocean regions appears restricted, thus, the most effective management scheme for L. pertusa involves regional reserve networks.

Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua

PubMed Central

Therkildsen, Nina Overgaard; Hemmer-Hansen, Jakob; Hedeholm, Rasmus Berg; Wisz, Mary S; Pampoulie, Christophe; Meldrup, Dorte; Bonanomi, Sara; Retzel, Anja; Olsen, Steffen Malskær; Nielsen, Einar Eg

2013-01-01

Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts. PMID:23789034

Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua.

PubMed

Therkildsen, Nina Overgaard; Hemmer-Hansen, Jakob; Hedeholm, Rasmus Berg; Wisz, Mary S; Pampoulie, Christophe; Meldrup, Dorte; Bonanomi, Sara; Retzel, Anja; Olsen, Steffen Malskær; Nielsen, Einar Eg

2013-06-01

Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts.

Effects of hypoxic exposure during feeding on SDA and postprandial cardiovascular physiology in the Atlantic cod, Gadus morhua.

PubMed

Behrens, Jane W; Axelsson, Michael; Neuenfeldt, Stefan; Seth, Henrik

2012-01-01

Some Atlantic cod in the Bornholm Basin undertake vertical foraging migrations into severely hypoxic bottom water. Hypoxic conditions can reduce the postprandial increase in gastrointestinal blood flow (GBF). This could subsequently postpone or reduce the postprandial increase in oxygen consumption (MO(2)), i.e. the SDA, leading to a disturbed digestion. Additionally, a restricted oxygen uptake could result in an oxygen debt that needs to be compensated for upon return to normoxic waters and this may also affect the ability to process the food. Long-term cardio-respiratory measurements were made on fed G. morhua in order to understand how the cardio-respiratory system of feeding fish respond to a period of hypoxia and a subsequent return to normoxia. These were exposed to 35% water oxygen saturation for 90 minutes, equivalent to the time and oxygen level cod voluntarily endure when searching for food in the Bornholm Basin. We found that i) gastric and intestinal blood flows, cardiac output and MO(2) increased after feeding, ii) gastric and intestinal blood flows were spared in hypoxia, and iii) there were no indications of an oxygen debt at the end of the hypoxic period. The magnitude and time course of the measured variables are similar to values obtained from fish not exposed to the hypoxic period. In conclusion, when cod in the field search for and ingest prey under moderate hypoxic conditions they appear to stay within safe limits of oxygen availability as we saw no indications of an oxygen debt, or negative influence on digestive capacity, when simulating field observations.

Effects of amino acid supplementations on metabolic and physiological parameters in Atlantic cod (Gadus morhua) under stress.

PubMed

Herrera, Marcelino; Herves, María Antonia; Giráldez, Inmaculada; Skar, Kristin; Mogren, Hanne; Mortensen, Atle; Puvanendran, Velmurugu

2017-04-01

The effects of tryptophan (Trp) and phenylalanine (Phe) diet supplementation on the stress and metabolism of the Atlantic cod have been studied. Fish were fed diet supplemented with Trp or Phe or control diet for 1 week. At the end of the feeding trial, fish were subjected to air exposure or heat shock. Following samples of blood, liver and muscle were taken from the fish and were analyzed for stress and metabolic indicators. After an air exposure, plasma cortisol levels in fish fed with Trp and Phe diets were lower compared to the fish fed the control diet. Diets containing both amino acids increased significantly the liver transaminase activities in juvenile cod. During thermal stress, high Trp contents had significant effects on fructose biphosphatase activity though Phe did not. Overall, activities of glucose 6-phosphate dehydrogenase, pyruvate kinase, and phosphofructokinase increased significantly for both amino acid diets. For the thermal stress, fish had the highest values of those activities for the 3Trp diet. Trp content in the diet had significant effects on the transaminase activity in muscle during air stress compared to fish fed control and Phe diets. Muscle alanine transaminase activity for thermal stress in fish fed any diet was not significantly different from the control. Both Trp and Phe supplementations reduced the stress markers in the cod; hence, they could be used as additives for the stress attenuation. However, they also raised the activity of key enzymes in glycolysis and gluconeogenesis, mainly the Trp diets.

Adhesion of mechanically and chemically dispersed crude oil droplets to eggs of Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus).

PubMed

Hansen, Bjørn Henrik; Sørensen, Lisbet; Carvalho, Patricia Almeira; Meier, Sonnich; Booth, Andy M; Altin, Dag; Farkas, Julia; Nordtug, Trond

2018-05-30

Crude oil accidentally spilled into the marine environment undergoes natural weathering processes that result in oil components being dissolved into the water column or present in particulate form as dispersed oil droplets. Oil components dissolved in seawater are typically considered as more bioavailable to pelagic marine organisms and the main driver of crude oil toxicity, however, recent studies indicate that oil droplets may also contribute. The adhesion of crude oil droplets onto the eggs of pelagic fish species may cause enhanced transfer of oil components via the egg surface causing toxicity during the sensitive embryonic developmental stage. In the current study, we utilized an oil droplet dispersion generator to generate defined oil droplets sizes/concentrations and exposed Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) to investigate if the potential for dispersed oil droplets to adhere onto the surface of eggs was species-dependent. The influence of a commercial chemical dispersant on the adhesion process was also studied. A key finding was that the adhesion of oil droplets was significantly higher for haddock than cod, highlighting key differences and exposure risks between the two species. Scanning electron microscopy indicates that the differences in oil droplet adhesion may be driven by the surface morphology of the eggs. Another important finding was that the adhesion capacity of oil droplets to fish eggs is significantly reduced (cod 37.3%, haddock 41.7%) in the presence of the chemical dispersant. Copyright © 2018 Elsevier B.V. All rights reserved.

iss055e023770

NASA Image and Video Library

2018-04-14

iss055e023770 (April 14, 2018) --- The southeast geography of the state of Massachusetts including Cape Cod Bay, Martha's Vineyard, Nantucket and the arm-shaped peninsula is clearly seen from the International Space Station as it orbited over the Atlantic coast of the United States.

Genetically distinct populations of northern shrimp, Pandalus borealis, in the North Atlantic: adaptation to different temperatures as an isolation factor.

PubMed

Jorde, Per Erik; Søvik, Guldborg; Westgaard, Jon-Ivar; Albretsen, Jon; André, Carl; Hvingel, Carsten; Johansen, Torild; Sandvik, Anne Dagrun; Kingsley, Michael; Jørstad, Knut Eirik

2015-04-01

The large-scale population genetic structure of northern shrimp, Pandalus borealis, was investigated over the species' range in the North Atlantic, identifying multiple genetically distinct groups. Genetic divergence among sample localities varied among 10 microsatellite loci (range: FST = -0.0002 to 0.0475) with a highly significant average (FST = 0.0149; P < 0.0001). In contrast, little or no genetic differences were observed among temporal replicates from the same localities (FST = 0.0004; P = 0.33). Spatial genetic patterns were compared to geographic distances, patterns of larval drift obtained through oceanographic modelling, and temperature differences, within a multiple linear regression framework. The best-fit model included all three factors and explained approximately 29% of all spatial genetic divergence. However, geographic distance and larval drift alone had only minor effects (2.5-4.7%) on large-scale genetic differentiation patterns, whereas bottom temperature differences explained most (26%). Larval drift was found to promote genetic homogeneity in parts of the study area with strong currents, but appeared ineffective across large temperature gradients. These findings highlight the breakdown of gene flow in a species with a long pelagic larval phase (up to 3 months) and indicate a role for local adaptation to temperature conditions in promoting evolutionary diversification and speciation in the marine environment. © 2015 John Wiley & Sons Ltd.

Potential impact of climate change on the Intra-Americas Sea: Part 2. Implications for Atlantic bluefin tuna and skipjack tuna adult and larval habitats

NASA Astrophysics Data System (ADS)

Muhling, Barbara A.; Liu, Yanyun; Lee, Sang-Ki; Lamkin, John T.; Roffer, Mitchell A.; Muller-Karger, Frank; Walter, John F., III

2015-08-01

Increasing water temperatures due to climate change will likely have significant impacts on distributions and life histories of Atlantic tunas. In this study, we combined predictive habitat models with a downscaled climate model to examine potential impacts on adults and larvae of Atlantic bluefin tuna (Thunnus thynnus) and skipjack tuna (Katsuwonus pelamis) in the Intra-Americas Sea (IAS). An additional downscaled model covering the 20th century was used to compare habitat fluctuations from natural variability to predicted future changes under two climate change scenarios: Representative Concentration Pathway (RCP) 4.5 (medium-low) and RCP 8.5 (high). Results showed marked temperature-induced habitat losses for both adult and larval bluefin tuna on their northern Gulf of Mexico spawning grounds. In contrast, habitat suitability for skipjack tuna increased as temperatures warmed. Model error was highest for the two skipjack tuna models, particularly at higher temperatures. This work suggests that influences of climate change on highly migratory Atlantic tuna species are likely to be substantial, but strongly species-specific. While impacts on fish populations remain uncertain, these changes in habitat suitability will likely alter the spatial and temporal availability of species to fishing fleets, and challenge equilibrium assumptions of environmental stability, upon which fisheries management benchmarks are based.

Egg buoyancy variability in local populations of Atlantic cod (Gadus morhua).

PubMed

Jung, Kyung-Mi; Folkvord, Arild; Kjesbu, Olav Sigurd; Agnalt, Ann Lisbeth; Thorsen, Anders; Sundby, Svein

2012-01-01

Previous studies have found strong evidences for Atlantic cod ( Gadus morhua ) egg retention in fjords, which are caused by the combination of vertical salinity structure, estuarine circulation, and egg specific gravity, supporting small-scaled geographical differentiations of local populations. Here, we assess the variability in egg specific gravity for selected local populations of this species, that is, two fjord-spawning populations and one coastal-spawning population from Northern Norway (66-71°N/10-25°E). Eggs were naturally spawned by raised broodstocks (March to April 2009), and egg specific gravity was measured by a density-gradient column. The phenotype of egg specific gravity was similar among the three local populations. However, the associated variability was greater at the individual level than at the population level. The noted gradual decrease in specific gravity from gastrulation to hatching with an increase just before hatching could be a generic pattern in pelagic marine fish eggs. This study provides needed input to adequately understand and model fish egg dispersal.

Spatial ecology of coastal Atlantic cod Gadus morhua associated with parasite load.

PubMed

Aalvik, I M; Moland, E; Olsen, E M; Stenseth, N C

2015-08-01

Acoustic tags and receivers were used to investigate the spatial ecology of coastal Atlantic cod Gadus morhua (n = 32, mean fork length: 50 cm, range: 33-80 cm) on the Norwegian Skagerrak coast in 2012. Monthly home ranges (HR), swimming activity and depth use varied considerably among individuals and through the months of June, July and August. HR sizes for the period ranged from 0.25 to 5.20 km2 (mean = 2.30 km2. Two thirds of the tagged G. morhua were infected with black spot disease Cryptocotyle lingua parasites; these fish had larger HRs and occupied deeper water compared with non-infected fish. The infected fish also tended to be more active in terms of horizontal swimming. From an ecological and evolutionary perspective, any environmental change that modifies G. morhua behaviour may therefore also alter the parasite load of the population, and its conservation and fishery status. © 2015 The Fisheries Society of the British Isles.

The removal of As(III) and As(V) from aqueous solutions by waste materials.

PubMed

Rahaman, M S; Basu, A; Islam, M R

2008-05-01

The use of different waste materials such as Atlantic Cod fish scale, chicken fat, coconut fibre and charcoal in removing arsenic [As(III) and As(V)] from aqueous solutions was investigated. Initial experimental runs, conducted for both As(III) and As(V) with the aforementioned materials, demonstrated the potential of using Atlantic Cod fish scale in removing both species of arsenic from aqueous streams. Therefore, the biosorbent fish scale was selected for further investigations and various parameters such as residence time, adsorbent dose, initial concentration of adsorbate, grain size of the adsorbent and pH of the bulk phase were studied to establish optimum conditions. The maximum adsorption capacity was observed at pH value 4.0. The equilibrium adsorption data were interpreted by using both Freundlich and Langmuir models. Rapid small-scale column tests (RSSCT) were also performed to determine the breakthrough characteristics of the arsenic species with respect to packed biosorbent columns.

Climate and population density drive changes in cod body size throughout a century on the Norwegian coast

PubMed Central

Rogers, Lauren A.; Stige, Leif C.; Olsen, Esben M.; Knutsen, Halvor; Chan, Kung-Sik; Stenseth, Nils Chr.

2011-01-01

Understanding how populations respond to changes in climate requires long-term, high-quality datasets, which are rare for marine systems. We estimated the effects of climate warming on cod lengths and length variability using a unique 91-y time series of more than 100,000 individual juvenile cod lengths from surveys that began in 1919 along the Norwegian Skagerrak coast. Using linear mixed-effects models, we accounted for spatial population structure and the nested structure of the survey data to reveal opposite effects of spring and summer warming on juvenile cod lengths. Warm summer temperatures in the coastal Skagerrak have limited juvenile growth. In contrast, warmer springs have resulted in larger juvenile cod, with less variation in lengths within a cohort, possibly because of a temperature-driven contraction in the spring spawning period. A density-dependent reduction in length was evident only at the highest population densities in the time series, which have rarely been observed in the last decade. If temperatures rise because of global warming, nonlinearities in the opposing temperature effects suggest that negative effects of warmer summers will increasingly outweigh positive effects of warmer springs, and the coastal Skagerrak will become ill-suited for Atlantic cod. PMID:21245301

New England Cod Collapse and the Climate.

PubMed

Meng, Kyle C; Oremus, Kimberly L; Gaines, Steven D

2016-01-01

To improve fishery management, there is an increasing need to understand the long-term consequences of natural and anthropogenic climate variability for ecological systems. New England's iconic cod populations have been in decline for several decades and have recently reached unprecedented lows. We find that 17% of the overall decline in Gulf of Maine cod biomass since 1980 can be attributed to positive phases of the North Atlantic Oscillation (NAO). This is a consequence of three results: i) a 1-unit increase in the NAO winter index is associated with a 17% decrease in the spring biomass of age-1 cod the following year; ii) this NAO-driven decrease persists as the affected cohort matures; iii) fishing practices appear to exacerbate NAO's direct biological effect such that, since 1913, a 1-unit increase in the NAO index lowers subsequent cod catch for up to 19 years. The Georges Bank cod stock displays similar patterns. Because we statistically detect a delay between the NAO and subsequent declines in adult biomass, our findings imply that observed current NAO conditions can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fish populations strongly affected by natural and anthropogenic climatic variation.

New England Cod Collapse and the Climate

PubMed Central

Meng, Kyle C.; Oremus, Kimberly L.; Gaines, Steven D.

2016-01-01

To improve fishery management, there is an increasing need to understand the long-term consequences of natural and anthropogenic climate variability for ecological systems. New England’s iconic cod populations have been in decline for several decades and have recently reached unprecedented lows. We find that 17% of the overall decline in Gulf of Maine cod biomass since 1980 can be attributed to positive phases of the North Atlantic Oscillation (NAO). This is a consequence of three results: i) a 1-unit increase in the NAO winter index is associated with a 17% decrease in the spring biomass of age-1 cod the following year; ii) this NAO-driven decrease persists as the affected cohort matures; iii) fishing practices appear to exacerbate NAO’s direct biological effect such that, since 1913, a 1-unit increase in the NAO index lowers subsequent cod catch for up to 19 years. The Georges Bank cod stock displays similar patterns. Because we statistically detect a delay between the NAO and subsequent declines in adult biomass, our findings imply that observed current NAO conditions can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fish populations strongly affected by natural and anthropogenic climatic variation. PMID:27463967

Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species

PubMed Central

Árnason, Einar

2015-01-01

Natural selection, the most important force in evolution, comes in three forms. Negative purifying selection removes deleterious variation and maintains adaptations. Positive directional selection fixes beneficial variants, producing new adaptations. Balancing selection maintains variation in a population. Important mechanisms of balancing selection include heterozygote advantage, frequency-dependent advantage of rarity, and local and fluctuating episodic selection. A rare pathogen gains an advantage because host defenses are predominantly effective against prevalent types. Similarly, a rare immune variant gives its host an advantage because the prevalent pathogens cannot escape the host’s apostatic defense. Due to the stochastic nature of evolution, neutral variation may accumulate on genealogical branches, but trans-species polymorphisms are rare under neutrality and are strong evidence for balancing selection. Balanced polymorphism maintains diversity at the major histocompatibility complex (MHC) in vertebrates. The Atlantic cod is missing genes for both MHC-II and CD4, vital parts of the adaptive immune system. Nevertheless, cod are healthy in their ecological niche, maintaining large populations that support major commercial fisheries. Innate immunity is of interest from an evolutionary perspective, particularly in taxa lacking adaptive immunity. Here, we analyze extensive amino acid and nucleotide polymorphisms of the cathelicidin gene family in Atlantic cod and closely related taxa. There are three major clusters, Cath1, Cath2, and Cath3, that we consider to be paralogous genes. There is extensive nucleotide and amino acid allelic variation between and within clusters. The major feature of the results is that the variation clusters by alleles and not by species in phylogenetic trees and discriminant analysis of principal components. Variation within the three groups shows trans-species polymorphism that is older than speciation and that is suggestive of balancing selection maintaining the variation. Using Bayesian and likelihood methods positive and negative selection is evident at sites in the conserved part of the genes and, to a larger extent, in the active part which also shows episodic diversifying selection, further supporting the argument for balancing selection. PMID:26038731

Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). Spot

DTIC Science & Technology

1989-02-01

lateral line scales, 72-77; Norfolk spot, golden croaker (during gill rakers short, 8 to 12 on the spawning season ), croaker, goody, upper limb and 20 to... pteropods , larval Sinc lage-cal motaltie of pelecypods, and cyclopoid copepods juveniles are not observed in the elecypodst and cyc)opo copepodsnursry...and R.S. Birdsong. 1985. Beaufort, N.C. Seasonal occurrence of larval and juvenile fishes in a Virginia Engle, D.W., and R.M. Thuotte. 1976

78 FR 42653 - Taking of Marine Mammals Incidental to Commercial Fishing Operations; Atlantic Large Whale Take...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-16

... through on their way to their Cape Cod Bay feeding ground. Recent passive acoustic studies analyzing right.... (Southern Point, Great Duck Island) 43[deg]59.36' N. lat., 68[deg]37.95' W. long. (R ``2'' Bell, Roaring...

Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic). Atlantic silverside

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fay, C.W.; Neves, R.J.; Pardue, G.B.

1983-10-01

Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. They are prepared to assist in environmental impact assessment. The Atlantic silverside (Menidia menidia) is an important link in estuarine food webs as an opportunistic omnivore and as forage for large piscivores such as striped bass (Morone saxatilis) and bluefish (Pomatomus saltatrix). Many times the Atlantic silverside is the most abundant fish species encountered in estuaries and tributaries. They mature at age 1 and spawn in the intertidal zone of estuaries from March to June in the mid-Atlantic region. Few 2-year-oldmore » fish are ever encountered, so the Atlantic silverside is basically a short-lived species. Most spawning occurs at high tide during new or full moon phases. Eggs are adhesive and are found attached to submerged vegetation. Larvae, juveniles, and adults generally inhabit similar areas. Sex is determined in larval development 32 to 46 days after hatching, and is a function of parental genotype and water temperature regime during the critical period. Fisheries for this species are not documented. Eggs can tolerate water temperatures between 15/sup 0/ and 30/sup 0/C, and larvae need temperatures above 15/sup 0/C for survival. Larvae tolerate relatively acute temperature increases. Upper lethal temperatures for juveniles and adults range from 30.5/sup 0/ to 33.8/sup 0/C, depending on acclimation temperature. Salinities of 20 ppt or lower significantly delay hatching and affect larval survival. Juveniles and adults tolerate the full range of naturally occurring salinities (i.e., freshwater to at least 37.8 ppt). 57 references, 2 figures.« less

Climate variability and the Icelandic marine ecosystem

NASA Astrophysics Data System (ADS)

Astthorsson, Olafur S.; Gislason, Astthor; Jonsson, Steingrimur

2007-11-01

This paper describes the main features of the Icelandic marine ecosystem and its response to climate variations during the 20th century. The physical oceanographic character and faunal composition in the southern and western parts of the Icelandic marine ecosystem are different from those in the northern and the eastern areas. The former areas are more or less continuously bathed by warm and saline Atlantic water while the latter are more variable and influenced by Atlantic, Arctic and even Polar water masses to different degrees. Mean annual primary production is higher in the Atlantic water than in the more variable waters north and east of Iceland, and higher closer to land than farther offshore. Similarly, zooplankton production is generally higher in the Atlantic water than in the waters north and east of Iceland. The main spawning grounds of most of the exploited fish stocks are in the Atlantic water south of the country while nursery grounds are off the north coast. In the recent years the total catch of fish and invertebrates has been in the range of 1.6-2.4 million ton. Capelin ( Mallotus villosus) is the most important pelagic stock and cod ( Gadus morhua) is by far the most important demersal fish stock. Whales are an important component of the Icelandic marine ecosystem, and Icelandic waters are an important habitat for some of the largest seabird populations in the Northeast Atlantic. In the waters to the north and east of Iceland, available information suggests the existence of a simple bottom-up controlled food chain from phytoplankton through Calanus, capelin and to cod. Less is known about the structure of the more complex southern part of the ecosystem. The Icelandic marine ecosystem is highly sensitive to climate variations as demonstrated by abundance and distribution changes of many species during the warm period in the 1930s, the cold period in the late 1960s and warming observed during the recent years. Some of these are highlighted in the paper.

Comparison of the Northeast Arctic cod year class strength (at the age of 3+) with the SST anomalies in main spawning ground (the Norwegian Shelf Waters) by results of analysis satellite monitoring data during last years.

NASA Astrophysics Data System (ADS)

Vanyushin, George

2015-04-01

Continuous long-term database (1998-2014) on the sea surface temperature (SST) comprising results of regional satellite monitoring (the Norwegian and the Barents seas) is used to resolve several applied problems. Authors have analyzed indirect influence the SST (the NOAA satellite data) on modern cod total stock biomass (abundance of the Northeast Arctic cod at age 3+). In this study, we went on the consideration of the relationship between the SST anomalies for March-April in the main spawning ground of the cod off the Lofoten islands in the Norwegian Shelf Waters and forecasting assessment of future cod generation success and its future abundance of 3 year old. Mean monthly SST and SST anomalies are computed for the selected area on the basis of the weekly SST maps which made by using the NOAA satellites data for the period 1998-2014. Comparison of the SST anomalies in the main spawning ground with abundance of the cod year class at age 3+ shows that survival of the cod generations was inhibited on the whole as negative (below -0,1C) well as positive SST anomalies (above +1,3C) during March and April. Finally, the results indicate that poor and low middle generations of cod at age 3+ (2002, 2004, 2010) occurred in years with negative or extremely high positive the SST anomalies in the spawning area. The SST anomalies in years which were close to normal significances provide conditions for appearance middle or strong generations of cod (2001-2003, 2005-2009, 2011-2013). So, the SST and SST anomalies (by the NOAA satellite data) characterize of increase in input of warm Atlantic waters which form numerous eddies along the main stream thus creating favorable conditions for spawning and development of the cod larvae and fry and provide them with food stock, finally direct influence on forming total stock biomass of cod and helping its population forecast. Key words: satellite monitoring of SST, the Northeast Arctic cod, spawning ground, forecast of the cod year class strength at age 3+.

An assessment of juvenile Atlantic cod Gadus morhua distribution and growth using diver operated stereo-video surveys.

PubMed

Elliott, S A M; Ahti, P A; Heath, M R; Turrell, W R; Bailey, D M

2016-08-01

Stereo-video scuba transects were conducted during daylight hours from June to September 2013 within a proposed marine protected area (MPA) in the Firth of Clyde, west of Scotland. More juvenile Atlantic cod Gadus morhua of fork length (LF ) range 6-11 cm were observed in substrata containing mixed gravel, including maerl, than in boulder-cobble substrata with high algal cover, or sand with low density seagrass. Community composition was significantly different between substratum types. A decrease in G. morhua abundance was observed over the period of data collection. Over time, mean and variance in G. morhua LF increased, indicating multiple recruitment events. Protecting mixed gravel substrata could be a beneficial management measure to support the survival and recruitment of juvenile G. morhua; other substrata might be important at night given their diel migratory behaviour. Stereo-video cameras provide a useful non-destructive fisheries-independent method to monitor species abundance and length measurements. © 2016 The Authors. Journal of Fish Biology published by John Wiley & Sons Ltd on behalf of The Fisheries Society of the British Isles.

Trace elements in organisms of different trophic groups in the White Sea

NASA Astrophysics Data System (ADS)

Budko, D. F.; Demina, L. L.; Martynova, D. M.; Gorshkova, O. M.

2015-09-01

Concentrations of trace elements (Fe, Mn, Cu, Pb, Ni, Cr, Cd, As, Co, and Se) have been studied in different trophic groups of organisms: primary producers (seston, presented mostly by phytoplankton), primary consumers (mesozooplankton, macrozooplankton, and bivalves), secondary consumers (predatory macrozooplankton and starfish), and consumers of higher trophic levels (fish species), inhabiting the coastal zone of Kandalaksha Bay and the White Sea (Cape Kartesh). The concentrations of elements differ significantly for the size groups of Sagitta elegans (zooplankton) and blue mussel Mytilus edulis, as well as for the bone and muscle tissues of studied fish species, Atlantic cod Gadus morhua marisalbi and Atlantic wolffish Anarhichas lupus. The concentrations of all the studied elements were lower among the primary consumers and producers, but increased again at higher trophic levels, from secondary consumers to tertiary consumers ("mesozooplankton → macrozooplankton Sagitta elegans" and "mussels → starfish"). Ni and Pb tended to decline through the food chains seston→…→cod and mesozooplankton→…→stickleback. Only the concentrations of Fe increased in all the trophic chains along with the increase of the trophic level.

Interannual variability of physical oceanographic characteristics of Gilbert Bay: A marine protected area in Labrador, Canada

NASA Astrophysics Data System (ADS)

Best, Sara; Lundrigan, Sarah; Demirov, Entcho; Wroblewski, Joe

2011-10-01

Gilbert Bay on the southeast coast of Labrador is the site of the first Marine Protected Area (MPA) established in the subarctic coastal zone of eastern Canada. The MPA was created to conserve a genetically distinctive population of Atlantic cod, Gadus morhua. This article presents results from a study of the interannual variability in atmospheric and physical oceanographic characteristics of Gilbert Bay over the period 1949-2006. We describe seasonal and interannual variability of the atmospheric parameters at the sea surface in the bay. The interannual variability of the atmosphere in the Gilbert Bay region is related to the North Atlantic Oscillation (NAO) and a recent warming trend in the local climate of coastal Labrador. The related changes in seawater temperature, salinity and sea-ice thickness in winter are simulated with a one-dimensional water column model, the General Ocean Turbulence Model (GOTM). A warming Gilbert Bay ecosystem would be favorable for cod growth, but reduced sea-ice formation during the winter months increases the danger of traveling across the bay by snowmobile.

Ontogenetic loops in habitat use highlight the importance of littoral habitats for early life-stages of oceanic fishes in temperate waters

NASA Astrophysics Data System (ADS)

Polte, Patrick; Kotterba, Paul; Moll, Dorothee; von Nordheim, Lena

2017-02-01

General concepts of larval fish ecology in temperate oceans predominantly associate dispersal and survival to exogenous mechanisms such as passive drift along ocean currents. However, for tropical reef fish larvae and species in inland freshwater systems behavioural aspects of habitat selection are evidently important components of dispersal. This study is focused on larval Atlantic herring (Clupea harengus) distribution in a Baltic Sea retention area, free of lunar tides and directed current regimes, considered as a natural mesocosm. A Lorenz curve originally applied in socio-economics to describe demographic income distribution was adapted to a 20 year time-series of weekly larval herring distribution, revealing size-dependent spatial homogeneity. Additional quantitative sampling of distinct larval development stages across pelagic and littoral areas uncovered a loop in habitat use during larval ontogeny, revealing a key role of shallow littoral waters. With increasing rates of coastal change, our findings emphasize the importance of the littoral zone when considering reproduction of pelagic, ocean-going fish species; highlighting a need for more sensitive management of regional coastal zones.

Ontogenetic loops in habitat use highlight the importance of littoral habitats for early life-stages of oceanic fishes in temperate waters

PubMed Central

Polte, Patrick; Kotterba, Paul; Moll, Dorothee; von Nordheim, Lena

2017-01-01

General concepts of larval fish ecology in temperate oceans predominantly associate dispersal and survival to exogenous mechanisms such as passive drift along ocean currents. However, for tropical reef fish larvae and species in inland freshwater systems behavioural aspects of habitat selection are evidently important components of dispersal. This study is focused on larval Atlantic herring (Clupea harengus) distribution in a Baltic Sea retention area, free of lunar tides and directed current regimes, considered as a natural mesocosm. A Lorenz curve originally applied in socio-economics to describe demographic income distribution was adapted to a 20 year time-series of weekly larval herring distribution, revealing size-dependent spatial homogeneity. Additional quantitative sampling of distinct larval development stages across pelagic and littoral areas uncovered a loop in habitat use during larval ontogeny, revealing a key role of shallow littoral waters. With increasing rates of coastal change, our findings emphasize the importance of the littoral zone when considering reproduction of pelagic, ocean-going fish species; highlighting a need for more sensitive management of regional coastal zones. PMID:28205543

Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil.

PubMed

Bagi, Andrea; Riiser, Even Sannes; Molland, Hilde Steine; Star, Bastiaan; Haverkamp, Thomas H A; Sydnes, Magne Olav; Pampanin, Daniela Maria

2018-04-02

The expansion of offshore oil exploration increases the risk of marine species being exposed to oil pollution in currently pristine areas. The adverse effects of oil exposure through toxic properties of polycyclic aromatic hydrocarbons (PAHs) have been well studied in Atlantic cod (Gadus morhua). Nevertheless, the fate of conjugated metabolites in the intestinal tract and their effect on the diversity of intestinal microbial community in fish is less understood. Here, we investigated the intestinal microbial community composition of Atlantic cod after 28 days of exposure to crude oil (concentration range 0.0-0.1 mg/L). Analysis of PAH metabolites in bile samples confirmed that uptake and biotransformation of oil compounds occurred as a result of the exposure. Various evidence for altered microbial communities was found in fish exposed to high (0.1 mg/L) and medium (0.05 mg/L) concentrations of oil when compared to fish exposed to low oil concentration (0.01 mg/L) or no oil (control). First, altered banding patterns were observed on denaturing gradient gel electrophoresis for samples pooled from each treatment group. Secondly, based on 16S rRNA sequences, higher levels of oil exposure were associated with a loss of overall diversity of the gut microbial communities. Furthermore, 8 operational taxonomic units (OTUs) were found to have significantly different relative abundances in samples from fishes exposed to high and medium oil concentrations when compared to samples from the control group and low oil concentration. Among these, only one OTU, a Deferribacterales, had increased relative abundance in samples from fish exposed to high oil concentration. The results presented herein contribute to a better understanding of the effects of oil contamination on the gut microbial community changes in fish and highlight the importance of further studies into the area. Our findings suggest that increased relative abundance of bacteria belonging to the order Deferribacterales may be indicative of exposure to oil at concentrations higher than 0.05 mg/L.

Larval Transport on the Atlantic Continental Shelf of North America: a Review

NASA Astrophysics Data System (ADS)

Epifanio, C. E.; Garvine, R. W.

2001-01-01

This review considers transport of larval fish and crustaceans on the continental shelf. Previous reviews have contained only limited treatments of the physical processes involved. The present paper provides a physical background that is considerably more comprehensive. It includes a discussion of three principal forcing agents: (1) wind stress; (2) tides propagating from the deep ocean; and (3) differences in density associated with the buoyant outflow of estuaries, surface heat flux, or the interaction of coastal and oceanic water masses at the seaward margin of the shelf. The authors discuss the effects of these forcing agents on transport of larvae in the Middle Atlantic and South Atlantic Bights along the east coast of North America. The discussion concentrates on three species (blue crab, menhaden, bluefish) that have been the subject of a very recent multi-disciplinary study. Taken as a whole, the reproductive activities of these three species span the entire year and utilize the entire shelf, from the most seaward margin to the estuarine nursery. The blue crab is representative of species affected by physical processes occurring during summer and early autumn on the inner and mid-shelf. Menhaden are impacted by processes occurring in winter on the outer and mid-shelf. Bluefish are influenced primarily by processes occurring during early spring at the outer shelf margin near the western boundary current. The authors conclude that alongshore wind stress and density differences, i.e. buoyancy-driven flow, are the primary agents of larval transport in the region. Circulation associated with the western boundary current is only important at the shelf margin and tidally driven processes are generally inconsequential.

Dispersal of Udonella australis (Monogenea: Udonellidae) between caligid copepods Caligus rogercresseyi and Lepeophtheirus mugiloidis on Chilean rock cod.

PubMed

Marin, Sandra L; Carvajal, Juan; George-Nascimento, Mario

2007-04-01

Udonella australis is a platyhelminth that lives on the surface of the ectoparasite copepods Caligus rogercresseyi and Lepeophtheirus mugiloidis, which coexist on the Chilean rock cod Eleginops maclovinus. The absence of a planktonic oncomiracidium stage in the life cycle of udonellids may limit their dispersal ability. However, the high prevalence and intensity of U. australis on C. rogercresseyi suggest they have developed dispersal strategies to compensate for the lack of a free-living larval stage. The goals of this study were to determine the main dispersal mechanisms of U. australis in 1 copepod species and to compare the dispersal ability of U. australis between 2 different copepod species. Chilean rock cods were infected with female (without udonellids) and male (with and without udonellids) C. rogercresseyi. Other fishes were also infected with this copepod (with U. australis) and with L. mugiloidis (without U. australis). The dispersal of udonellids among copepods occurs through both intraspecific and interspecific processes. The main dispersal mechanism appears to be copepod mating; contact between same-sex individuals is less important. Intraspecific dispersal seems to be more dependent on the number of udonellids per fish than on copepod abundance, as observed for interspecific dispersal.

The influence of larval migration and dispersal depth on potential larval trajectories of a deep-sea bivalve

NASA Astrophysics Data System (ADS)

McVeigh, Doreen M.; Eggleston, David B.; Todd, Austin C.; Young, Craig M.; He, Ruoying

2017-09-01

Many fundamental questions in marine ecology require an understanding of larval dispersal and connectivity, yet direct observations of larval trajectories are difficult or impossible to obtain. Although biophysical models provide an alternative approach, in the deep sea, essential biological parameters for these models have seldom been measured empirically. In this study, we used a biophysical model to explore the role of behaviorally mediated migration from two methane seep sites in the Gulf of Mexico on potential larval dispersal patterns and population connectivity of the deep-sea mussel ;Bathymodiolus; childressi, a species for which some biological information is available. Three possible larval dispersal strategies were evaluated for larvae with a Planktonic Larval Duration (PLD) of 395 days: (1) demersal drift, (2) dispersal near the surface early in larval life followed by an extended demersal period before settlement, and (3) dispersal near the surface until just before settlement. Upward swimming speeds varied in the model based on the best data available. Average dispersal distances for simulated larvae varied between 16 km and 1488 km. Dispersal in the upper water column resulted in the greatest dispersal distance (1173 km ± 2.00), followed by mixed dispersal depth (921 km ± 2.00). Larvae originating in the Gulf of Mexico can potentially seed most known seep metapopulations on the Atlantic continental margin, whereas larvae drifting demersally cannot (237 km ± 1.43). Depth of dispersal is therefore shown to be a critical parameter for models of deep-sea connectivity.

Trait-based Modeling of Larval Dispersal in the Gulf of Maine

NASA Astrophysics Data System (ADS)

Jones, B.; Richardson, D.; Follows, M. J.; Hill, C. N.; Solow, A.; Ji, R.

2016-02-01

Population connectivity of marine species is the inter-generational movement of individuals among geographically separated subpopulations and is a crucial determinant of population dynamics, community structure, and optimal management strategies. For many marine species, population connectivity is largely determined by the dispersal patterns that emerge from a pelagic larval phase. These dispersal patterns are a result of interactions between the physical environment, adult spawning strategy, and larval ecology. Using a generalized trait-based model that represents the adult spawning strategy as a distribution of larval releases in time and space and the larval trait space with the pelagic larval duration, vertical swimming behavior, and settlement habitat preferences, we simulate dispersal patterns in the Gulf of Maine and surrounding regions. We implement this model as an individual-based simulation that tracks Lagrangian particles on a graphics processing unit as they move through hourly archived output from the Finite-Volume Community Ocean Model. The particles are released between the Hudson Canyon and Nova Scotia and the release distributions are determined using a novel method that minimizes the number of simulations required to achieve a predetermined level of precision for the connectivity matrices. The simulated larvae have a variable pelagic larval duration and exhibit multiple forms of dynamic depth-keeping behavior. We describe how these traits influence the dispersal trajectories and connectivity patterns among regions in the northwest Atlantic. Our description includes the probability of successful recruitment, patchiness of larval distributions, and the variability of these properties in time and space under a variety of larval dispersal strategies.

Climate warming causes life-history evolution in a model for Atlantic cod (Gadus morhua).

PubMed

Holt, Rebecca E; Jørgensen, Christian

2014-01-01

Climate change influences the marine environment, with ocean warming being the foremost driving factor governing changes in the physiology and ecology of fish. At the individual level, increasing temperature influences bioenergetics and numerous physiological and life-history processes, which have consequences for the population level and beyond. We provide a state-dependent energy allocation model that predicts temperature-induced adaptations for life histories and behaviour for the North-East Arctic stock (NEA) of Atlantic cod (Gadus morhua) in response to climate warming. The key constraint is temperature-dependent respiratory physiology, and the model includes a number of trade-offs that reflect key physiological and ecological processes. Dynamic programming is used to find an evolutionarily optimal strategy of foraging and energy allocation that maximizes expected lifetime reproductive output given constraints from physiology and ecology. The optimal strategy is then simulated in a population, where survival, foraging behaviour, growth, maturation and reproduction emerge. Using current forcing, the model reproduces patterns of growth, size-at-age, maturation, gonad production and natural mortality for NEA cod. The predicted climate responses are positive for this stock; under a 2°C warming, the model predicted increased growth rates and a larger asymptotic size. Maturation age was unaffected, but gonad weight was predicted to more than double. Predictions for a wider range of temperatures, from 2 to 7°C, show that temperature responses were gradual; fish were predicted to grow faster and increase reproductive investment at higher temperatures. An emergent pattern of higher risk acceptance and increased foraging behaviour was also predicted. Our results provide important insight into the effects of climate warming on NEA cod by revealing the underlying mechanisms and drivers of change. We show how temperature-induced adaptations of behaviour and several life-history traits are not only mediated by physiology but also by trade-offs with survival, which has consequences for conservation physiology.

Climate warming causes life-history evolution in a model for Atlantic cod (Gadus morhua)

PubMed Central

Holt, Rebecca E.; Jørgensen, Christian

2014-01-01

Climate change influences the marine environment, with ocean warming being the foremost driving factor governing changes in the physiology and ecology of fish. At the individual level, increasing temperature influences bioenergetics and numerous physiological and life-history processes, which have consequences for the population level and beyond. We provide a state-dependent energy allocation model that predicts temperature-induced adaptations for life histories and behaviour for the North-East Arctic stock (NEA) of Atlantic cod (Gadus morhua) in response to climate warming. The key constraint is temperature-dependent respiratory physiology, and the model includes a number of trade-offs that reflect key physiological and ecological processes. Dynamic programming is used to find an evolutionarily optimal strategy of foraging and energy allocation that maximizes expected lifetime reproductive output given constraints from physiology and ecology. The optimal strategy is then simulated in a population, where survival, foraging behaviour, growth, maturation and reproduction emerge. Using current forcing, the model reproduces patterns of growth, size-at-age, maturation, gonad production and natural mortality for NEA cod. The predicted climate responses are positive for this stock; under a 2°C warming, the model predicted increased growth rates and a larger asymptotic size. Maturation age was unaffected, but gonad weight was predicted to more than double. Predictions for a wider range of temperatures, from 2 to 7°C, show that temperature responses were gradual; fish were predicted to grow faster and increase reproductive investment at higher temperatures. An emergent pattern of higher risk acceptance and increased foraging behaviour was also predicted. Our results provide important insight into the effects of climate warming on NEA cod by revealing the underlying mechanisms and drivers of change. We show how temperature-induced adaptations of behaviour and several life-history traits are not only mediated by physiology but also by trade-offs with survival, which has consequences for conservation physiology. PMID:27293671

The role of extracellular matrix components in pin bone attachments during storage-a comparison between farmed Atlantic salmon (Salmo salar) and cod (Gadus morhua L.).

PubMed

Rønning, Sissel B; Østbye, Tone-Kari; Krasnov, Aleksei; Vuong, Tram T; Veiseth-Kent, Eva; Kolset, Svein O; Pedersen, Mona E

2017-04-01

Pin bones represent a major problem for processing and quality of fish products. Development of methods of removal requires better knowledge of the pin bones' attachment to the muscle and structures involved in the breakdown during loosening. In this study, pin bones from cod and salmon were dissected from fish fillets after slaughter or storage on ice for 5 days, and thereafter analysed with molecular methods, which revealed major differences between these species before and after storage. The connective tissue (CT) attaches the pin bone to the muscle in cod, while the pin bones in salmon are embedded in adipose tissue. Collagens, elastin, lectin-binding proteins and glycosaminoglycans (GAGs) are all components of the attachment site, and this differ between salmon and cod, resulting in a CT in cod that is more resistant to enzymatic degradation compared to the CT in salmon. Structural differences are reflected in the composition of transcriptome. Microarray analysis comparing the attachment sites of the pin bones with a reference muscle sample showed limited differences in salmon. In cod, on the other hand, the variances were substantial, and the gene expression profiles suggested difference in myofibre structure, metabolism and cell processes between the pin bone attachment site and the reference muscle. Degradation of the connective tissue occurs closest to the pin bones and not in the neighbouring tissue, which was shown using light microscopy. This study shows that the attachment of the pin bones in cod and salmon is different; therefore, the development of methods for removal should be tailored to each individual species.

Environmental genotoxicity and cytotoxicity in flounder (Platichthys flesus), herring (Clupea harengus) and Atlantic cod (Gadus morhua) from chemical munitions dumping zones in the southern Baltic Sea.

PubMed

Baršienė, Janina; Butrimavičienė, Laura; Grygiel, Wlodzimierz; Lang, Thomas; Michailovas, Aleksandras; Jackūnas, Tomas

2014-05-01

The data on environmental genotoxicity and cytotoxicity levels as well as on genotoxicity risk in flounder (Platichthys flesus), herring (Clupea harengus) and cod (Gadus morhua) collected in 2010-2012 at 42 stations located in chemical munitions dumping areas of the southern Baltic Sea are presented. The frequency of micronuclei, nuclear buds and nucleoplasmic bridges in erythrocytes was used as genotoxicity endpoint and the induction of fragmented-apoptotic, bi-nucleated and 8-shaped erythrocytes as cytotoxicity endpoint. The most significantly increased geno-cytotoxicity levels were determined in fish collected near known chemical munitions dumpsites. Extremely high genotoxicity risk for flounder were identified at 21 out of 24 stations, for herring at 29 out of 31 and for cod at 5 out of 10 stations studied. The reference level of genotoxicity was not recorded at any of the stations revealing that in the sampling area fish were affected generally. Copyright © 2013 Elsevier Ltd. All rights reserved.

Autumn larval fish assemblages in the northwest African Atlantic coastal zone

NASA Astrophysics Data System (ADS)

Abdelouahab, Hinde; Berraho, Amina; Baibai, Tarik; Agouzouk, Aziz; Makaoui, Ahmed; Errhif, Ahmed

2017-05-01

A study on the assemblage composition and vertical distribution of larval fish was conducted in the southern area of the Moroccan Atlantic coast in Autumn 2011. A total of 1 680 fish larvae taxa were identified from 21 families. The majority of the larvae were present in the upper layers. Clupeids were the most abundant larvae taxa followed by Myctophidae, Gadidae and Sparidae, hence the larval fish assemblages (LFA) were variable in diff erent depth layers. Total fish larvae showed a preference for surface layers, and were mainly found above 75 m depth, with some exceptions. The maximum concentration of fish larvae was concentrated up to 25 m essentially above the thermocline, where chlorophyll a and mesozooplankton were abundant. Spatially, neritic families were located near the coast and at some off shore stations especially in the northern part, while oceanic families were more distributed towards off shore along the study area. Cluster analysis showed a segregation of two groups of larvae. However, a clear separation between neritic families and oceanic families was not found. Multivariate analysis highlighted the relationship between the distribution of larvae of diff erent families and environmental parameters. Temperature and salinity seem to have been the factors that acted on associations of fish larvae. Day/night vertical distributions suggest there was not a very significant vertical migration, probably due to adequate light levels for feeding.

Pathological and behavioral manifestations of the “Cayuga syndrome,” a thiamine deficiency in larval landlocked Atlantic salmon

USGS Publications Warehouse

Fisher, Jeffrey P.; Spitsbergen, Jan M.; Iamonte, Tina; Little, Edward E.; DeLonay, Aaron

1995-01-01

The “Cayuga syndrome” is a maternally transmitted, naturally occurring thiamine deficiency that causes 100% mortality of larval landlocked Atlantic salmon Salmo salar in several of New York's Finger Lakes, Results of multiyear studies to qualify and quantify the neurobehavioral and gross pathological signs of this condition are described, Affected sac fry became weak and ataxic and responded atypically to stimuli 1–2 weeks before death. Quantitative assays of stimulus-provoked swimming revealed a significant neuropathy whereby the sac fry exhibited abnormal thigmotactic and phototactic behaviors. Gross lesions observed in Cayuga sac fry included yolk-sac opacities, subcutaneous edema, vitelline hemorrhage or congestion, pericardial edema, retrobulbar edema, branchial congestion, foreshortened maxillae, hydrocephalus, and occasional caudal fin deformities, Lesion frequency in progeny differed significantly between dam source. Yolk conversion efficiency was decreased at least 1 week before death, suggesting that the bioenergetics of the fish was compromised and thereby supporting the thiamine residue and treatment data reported elsewhere, Comparisons with coagulated-yolk, blue-sac and swim-up syndromes are presented, The pathological signs of the Cayuga syndrome represent a unique departure from the lesions induced by toxicants or pathogens in other piscine models, and for the first time profile the profound effects of thiamine deficiency on cardiovascular and neurological systems of larval fish.

The use of CPR data in fisheries research [review article

NASA Astrophysics Data System (ADS)

Corten, A.; Lindley, J. A.

2003-08-01

The Continuous Plankton Recorder (CPR) survey was initiated partly to contribute to our understanding of the variability of fish stocks and as a potential method for predicting fish distributions from the abundance and composition of the plankton. The latter objective has been superseded by technological developments in fish detection, but the former has been the subject of continuing, and in recent years expanding use of the CPR data. Examples are presented of application of the data to studies on North Sea herring, cod, mackerel, blue whiting and redfish as well as more general plankton studies relevant to fisheries research. Variations in the migration patterns of herring as well as recruitment have been related to abundances and species composition of the plankton in the CPR survey. Extensive use has been made of the CPR data in relation to cod, particularly in the development and testing of the ‘match-mismatch’ hypothesis. Advection of sufficient numbers of Calanus from the core oceanic areas of its distribution into the areas where the cod stocks occur may partly determine the success of those stocks. The analysis of the distribution and abundances of mackerel larvae in the CPR survey have shown contrasting variations between the North Sea and Celtic Sea. The expansion of the horse mackerel fishery in the north-eastern North Sea since 1987 has been related to physical events and a ‘regime shift’ in the plankton, described from CPR data. The oceanic spawning areas of the blue whiting and redfish were highlighted by the expansion of the CPR survey into the north-eastern and north-western Atlantic respectively. These results helped to focus the attention of fisheries scientists on stocks that have subsequently become the targets for commercial exploitation. The results of the CPR survey, particularly those on Calanusfinmarchicus, the phytoplankton standing stock as measured by the CPR colour index, the overall patterns of trends in plankton abundance and distributions of indicator species have been used by fisheries scientists to interpret variations in fish stocks. Generally the CPR data can be used to determine whether changes in the distributions and growth rates of fish have resulted from changes in planktonic food, changes in strength of ocean currents and distribution of water masses and to identify trends in larval abundances. With the tightening regulation of fisheries to reduce overfishing, global climate change and changing anthropogenic inputs into the sea, the unique source of information on unexploited populations in the long-term time series of the CPR survey will be of increasing value to fisheries scientists in the study of natural variability.

77 FR 66585 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; General Provisions for Domestic...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-11-06

... 11 commercial fishing vessels from the following Federal American lobster regulations: (1) Gear... patterns of larval dispersal and settlement in the offshore Lobster Management Area 3 (Area 3), 11 federally permitted vessels would utilize a maximum combined total of 50 modified lobster traps to target...

76 FR 41764 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; General Provisions for Domestic...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-15

... scientists and the fishing industry, to help them understand the settlement and location of larval lobsters... vessels from the following Federal American lobster regulation: Mutilation requirement within American lobster management Area 3. The researchers propose to collect a pleopod (small swimmerettes located on the...

Biophysical and Population Genetic Models Predict the Presence of "Phantom" Stepping Stones Connecting Mid-Atlantic Ridge Vent Ecosystems.

PubMed

Breusing, Corinna; Biastoch, Arne; Drews, Annika; Metaxas, Anna; Jollivet, Didier; Vrijenhoek, Robert C; Bayer, Till; Melzner, Frank; Sayavedra, Lizbeth; Petersen, Jillian M; Dubilier, Nicole; Schilhabel, Markus B; Rosenstiel, Philip; Reusch, Thorsten B H

2016-09-12

Deep-sea hydrothermal vents are patchily distributed ecosystems inhabited by specialized animal populations that are textbook meta-populations. Many vent-associated species have free-swimming, dispersive larvae that can establish connections between remote populations. However, connectivity patterns among hydrothermal vents are still poorly understood because the deep sea is undersampled, the molecular tools used to date are of limited resolution, and larval dispersal is difficult to measure directly. A better knowledge of connectivity is urgently needed to develop sound environmental management plans for deep-sea mining. Here, we investigated larval dispersal and contemporary connectivity of ecologically important vent mussels (Bathymodiolus spp.) from the Mid-Atlantic Ridge by using high-resolution ocean modeling and population genetic methods. Even when assuming a long pelagic larval duration, our physical model of larval drift suggested that arrival at localities more than 150 km from the source site is unlikely and that dispersal between populations requires intermediate habitats ("phantom" stepping stones). Dispersal patterns showed strong spatiotemporal variability, making predictions of population connectivity challenging. The assumption that mussel populations are only connected via additional stepping stones was supported by contemporary migration rates based on neutral genetic markers. Analyses of population structure confirmed the presence of two southern and two hybridizing northern mussel lineages that exhibited a substantial, though incomplete, genetic differentiation. Our study provides insights into how vent animals can disperse between widely separated vent habitats and shows that recolonization of perturbed vent sites will be subject to chance events, unless connectivity is explicitly considered in the selection of conservation areas. Copyright © 2016 Elsevier Ltd. All rights reserved.

Geologic history of Cape Cod, Massachusetts

USGS Publications Warehouse

,

1976-01-01

Cape Cod, a sandy peninsula built mostly during the Ice Age, juts into the Atlantic Ocean like a crooked arm. Because of its exposed location, Cape Cod was visited by many early explorers. Although clear-cut evidence is lacking, the Vikings may have sighted this land about 1,000 years ago. It was visited by Samuel de Champlain in 1605, and his detailed descriptions and charts have helped present-day scientists to determine the rate of growth of Nauset Beach marsh and Nauset spit. Bartholomew Gosnold, a lesser known explorer, settled for a short time on the Elizabeth Islands to the southwest and gave Cape Cod its name in 1602. The Pilgrims first landed in America on the tip of Lower Cape Cod after they were turned back from their more southerly destination by shoals between Cape Cod and Nantucket Island. On Cape Cod they found potable water and food and had their first fight with the natives. The Pilgrims, however, decided that this land was too isolated, too exposed, and too sandy to support them, and they sailed across Cape Cod Bay to establish Plymouth. These features remain today. Small villages are separated by large areas of forest, dune, beach, and marsh. This unspoiled natural beauty makes Cape Cod one of the most favored vacation areas for the people living in the thickly settled Northeastern States. Cape Cod is of particular interest to geologists because it was formed by glaciers very recently in terms of geologic time. During the Great Ice Age, (the Pleistocene Epoch which began 2 to 3 million years ago), glaciers advanced from the north into the temperate regions of the Earth. Glacial ice covered the land at least four times. Each advance was accompanied by a worldwide lowering of sea level because the source of the ice was water from the seas. When the glaciers melted, the climate and sea level were probably much like they are today. In fact, some scientists believe that the Earth is presently between glacial episodes and that ice once again will advance across the land.

Single and mixture effects of aquatic micropollutants studied in precision-cut liver slices of Atlantic cod (Gadus morhua).

PubMed

Bizarro, Cristina; Eide, Marta; Hitchcock, Daniel J; Goksøyr, Anders; Ortiz-Zarragoitia, Maren

2016-08-01

The low concentrations of most contaminants in the aquatic environment individually may not affect the normal function of the organisms on their own. However, when combined, complex mixtures may provoke unexpected effects even at low amounts. Selected aquatic micropollutants such as chlorpyrifos, bis-(2-ethylhexyl)-phthalate (DEHP), perfluorooctanoic acid (PFOA) and 17α-ethinylestradiol (EE2) were tested singly and in mixtures at nM to μM concentrations using precision-cut liver slices (PCLS) of Atlantic cod (Gadus morhua). Fish liver is a target organ for contaminants due to its crucial role in detoxification processes. In order to understand the effects on distinct key liver metabolic pathways, transcription levels of various genes were measured, including cyp1a1 and cyp3a, involved in the metabolism of organic compounds, including toxic ones, and the catabolism of bile acids and steroid hormones; cyp7a1, fabp and hmg-CoA, involved in lipid and cholesterol homeostasis; cyp24a1, involved in vitamin D metabolism; and vtg, a key gene in xenoestrogenic response. Only EE2 had significant effects on gene expression in cod liver slices when exposed singly at the concentrations tested. However, when exposed in combinations, effects not detected in single exposure conditions arose, suggesting complex interactions between studied pollutants that could not be predicted from the results of individual exposure scenarios. Thus, the present work highlights the importance of assessing mixtures when describing the toxic effects of micropollutants to fish liver metabolism. Copyright © 2016 Elsevier B.V. All rights reserved.

The role of a dominant predator in shaping biodiversity over space and time in a marine ecosystem.

PubMed

Ellingsen, Kari E; Anderson, Marti J; Shackell, Nancy L; Tveraa, Torkild; Yoccoz, Nigel G; Frank, Kenneth T

2015-09-01

1. Exploitation of living marine resources has resulted in major changes to populations of targeted species and functional groups of large-bodied species in the ocean. However, the effects of overfishing and collapse of large top predators on the broad-scale biodiversity of oceanic ecosystems remain largely unexplored. 2. Populations of the Atlantic cod (Gadus morhua) were overfished and several collapsed in the early 1990s across Atlantic Canada, providing a unique opportunity to study potential ecosystem-level effects of the reduction of a dominant predator on fish biodiversity, and to identify how such effects might interact with other environmental factors, such as changes in climate, over time. 3. We combined causal modelling with model selection and multimodel inference to analyse 41 years of fishery-independent survey data (1970-2010) and quantify ecosystem-level effects of overfishing and climate variation on the biodiversity of fishes across a broad area (172 000 km(2) ) of the Scotian Shelf. 4. We found that alpha and beta diversity increased with decreases in cod occurrence; fish communities were less homogeneous and more variable in systems where cod no longer dominated. These effects were most pronounced in the colder north-eastern parts of the Scotian Shelf. 5. Our results provide strong evidence that intensive harvesting (and collapse) of marine apex predators can have large impacts on biodiversity, with far-reaching consequences for ecological stability across an entire ecosystem. © 2015 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.

Are genes faster than crabs? Mitochondrial introgression exceeds larval dispersal during population expansion of the invasive crab Carcinus maenas.

PubMed

Darling, John A; Tsai, Yi-Hsin Erica; Blakeslee, April M H; Roman, Joe

2014-10-01

Biological invasions offer unique opportunities to investigate evolutionary dynamics at the peripheries of expanding populations. Here, we examine genetic patterns associated with admixture between two distinct invasive lineages of the European green crab, Carcinus maenas L., independently introduced to the northwest Atlantic. Previous investigations based on mitochondrial DNA sequences demonstrated that larval dispersal driven by advective currents could explain observed southward displacement of an admixture zone between the two invasions. Comparison of published mitochondrial results with new nuclear data from nine microsatellite loci, however, reveals striking discordance in their introgression patterns. Specifically, introgression of mitochondrial genomes relative to nuclear background suggests that demographic processes such as sex-biased reproductive dynamics and population size imbalances-and not solely larval dispersal-play an important role in driving the evolution of the genetic cline. In particular, the unpredicted introgression of mitochondrial alleles against the direction of mean larval dispersal in the region is consistent with recent models invoking similar demographic processes to explain movements of genes into invading populations. These observations have important implications for understanding historical shifts in C. maenas range limits, and more generally for inferences of larval dispersal based on genetic data.

Are genes faster than crabs? Mitochondrial introgression exceeds larval dispersal during population expansion of the invasive crab Carcinus maenas

PubMed Central

Darling, John A.; Tsai, Yi-Hsin Erica; Blakeslee, April M. H.; Roman, Joe

2014-01-01

Biological invasions offer unique opportunities to investigate evolutionary dynamics at the peripheries of expanding populations. Here, we examine genetic patterns associated with admixture between two distinct invasive lineages of the European green crab, Carcinus maenas L., independently introduced to the northwest Atlantic. Previous investigations based on mitochondrial DNA sequences demonstrated that larval dispersal driven by advective currents could explain observed southward displacement of an admixture zone between the two invasions. Comparison of published mitochondrial results with new nuclear data from nine microsatellite loci, however, reveals striking discordance in their introgression patterns. Specifically, introgression of mitochondrial genomes relative to nuclear background suggests that demographic processes such as sex-biased reproductive dynamics and population size imbalances—and not solely larval dispersal—play an important role in driving the evolution of the genetic cline. In particular, the unpredicted introgression of mitochondrial alleles against the direction of mean larval dispersal in the region is consistent with recent models invoking similar demographic processes to explain movements of genes into invading populations. These observations have important implications for understanding historical shifts in C. maenas range limits, and more generally for inferences of larval dispersal based on genetic data. PMID:26064543

The parasitic copepod Lernaeocera branchialis negatively affects cardiorespiratory function in Gadus morhua.

PubMed

Behrens, J W; Seth, H; Axelsson, M; Buchmann, K

2014-05-01

The parasitic copepod Lernaeocera branchialis had a negative effect on cardiorespiratory function in Atlantic cod Gadus morhua such that it caused pronounced cardiac dysfunction with irregular rhythm and reduced stroke amplitude compared with uninfected fish. In addition, parasite infection depressed the postprandial cardiac output and oxygen consumption. © 2014 The Fisheries Society of the British Isles.

Underwater sound from vessel traffic reduces the effective communication range in Atlantic cod and haddock.

PubMed

Stanley, Jenni A; Van Parijs, Sofie M; Hatch, Leila T

2017-11-07

Stellwagen Bank National Marine Sanctuary is located in Massachusetts Bay off the densely populated northeast coast of the United States; subsequently, the marine inhabitants of the area are exposed to elevated levels of anthropogenic underwater sound, particularly due to commercial shipping. The current study investigated the alteration of estimated effective communication spaces at three spawning locations for populations of the commercially and ecologically important fishes, Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus). Both the ambient sound pressure levels and the estimated effective vocalization radii, estimated through spherical spreading models, fluctuated dramatically during the three-month recording periods. Increases in sound pressure level appeared to be largely driven by large vessel activity, and accordingly exhibited a significant positive correlation with the number of Automatic Identification System tracked vessels at the two of the three sites. The near constant high levels of low frequency sound and consequential reduction in the communication space observed at these recording sites during times of high vocalization activity raises significant concerns that communication between conspecifics may be compromised during critical biological periods. This study takes the first steps in evaluating these animals' communication spaces and alteration of these spaces due to anthropogenic underwater sound.

Parasites as biological tags of marine, freshwater and anadromous fishes in North America from the Tropics to the Arctic.

PubMed

Marcogliese, David J; Jacobson, Kym C

2015-01-01

Parasites have been considered as natural biological tags of marine fish populations in North America for almost 75 years. In the Northwest Atlantic, the most studied species include Atlantic cod (Gadus morhua), Atlantic herring (Clupea harengus) and the redfishes (Sebastes spp.). In the North Pacific, research has centred primarily on salmonids (Oncorhynchus spp.). However, parasites have been applied as tags for numerous other pelagic and demersal species on both the Atlantic and Pacific coasts. Relatively few studies have been undertaken in the Arctic, and these were designed to discriminate anadromous and resident salmonids (Salvelinus spp.). Although rarely applied in fresh waters, parasites have been used to delineate certain fish stocks within the Great Lakes-St Lawrence River basin. Anisakid nematodes and the copepod Sphyrion lumpi frequently prove useful indicators in the Northwest Atlantic, while myxozoan parasites prove very effective on the coast and open seas of the Pacific Ocean. Relative differences in the ability of parasites to discriminate between fish stocks on the Pacific and Atlantic coasts may be due to oceanographic and bathymetric differences between regions. Molecular techniques used to differentiate populations and species of parasites show promise in future applications in the field.

Climate variability and marine ecosystem impacts: a North Atlantic perspective

NASA Astrophysics Data System (ADS)

Parsons, L. S.; Lear, W. H.

In recent decades it has been recognized that in the North Atlantic climatic variability has been largely driven by atmospheric forcing related to the North Atlantic Oscillation (NAO). The NAO index began a pronounced decline around 1950 to a low in the 1960s. From 1970 onward the NAO index increased to its most extreme and persistent positive phase during the late 1980s and early 1990s. Changes in the pattern of the NAO have differential impacts on the opposite sides of the North Atlantic and differential impacts in the north and south. The changes in climate resulting from changes in the NAO appear to have had substantial impacts on marine ecosystems, in particular, on fish productivity, with the effects varying from region to region. An examination of several species and stocks, e.g. gadoids, herring and plankton in the Northeast Atlantic and cod and shellfish in the Northwest Atlantic, indicates that there is a link between long-term trends in the NAO and the productivity of various components of the marine ecosystem. While broad trends are evident, the mechanisms are poorly understood. Further research is needed to improve our understanding of how this climate variability affects the productivity of various components of the North Atlantic marine ecosystem.

Molecular identification and transmission studies of X-cell parasites from Atlantic cod Gadus morhua (Gadiformes: Gadidae) and the northern black flounder Pseudopleuronectes obscurus (Pleuronectiformes: Pleuronectidae)

PubMed Central

2011-01-01

Background Epidermal pseudotumours from Hippoglossoides dubius and Acanthogobius flavimanus in Japan and gill lesions in Limanda limanda from the UK have been shown to be caused by phylogenetically related protozoan parasites, known collectively as X-cells. However, the phylogenetic position of the X-cell group is not well supported within any of the existing protozoan phyla and they are currently thought to be members of the Alveolata. Ultrastructural features of X-cells in fish pseudotumours are somewhat limited and no typical environmental stages, such as spores or flagellated cells, have been observed. The life cycles for these parasites have not been demonstrated and it remains unknown how transmission to a new host occurs. In the present study, pseudobranchial pseudotumours from Atlantic cod, Gadus morhua, in Iceland and epidermal pseudotumours from the northern black flounder, Pseudopleuronectes obscurus, in Japan were used in experimental transmission studies to establish whether direct transmission of the parasite is achievable. In addition, X-cells from Atlantic cod were sequenced to confirm whether they are phylogenetically related to other X-cells and epidermal pseudotumours from the northern black flounder were analysed to establish whether the same parasite is responsible for infecting different flatfish species in Japan. Results Phylogenetic analyses of small subunit ribosomal DNA (SSU rDNA) sequence data from Atlantic cod X-cells show that they are a related parasite that occupies a basal position to the clade containing other X-cell parasites. The X-cell parasite causing epidermal pseudotumours in P. obscurus is the same parasite that causes pseudotumours in H. dubius. Direct, fish to fish, transmission of the X-cell parasites used in this study, via oral feeding or injection, was not achieved. Non-amoeboid X-cells are contained within discrete sac-like structures that are loosely attached to epidermal pseudotumours in flatfish; these X-cells are able to tolerate exposure to seawater. A sensitive nested PCR assay was developed for the sub clinical detection of both parasites and to assist in future life cycle studies. PCR revealed that the parasite in P. obscurus was detectable in non-pseudotumourous areas of fish that had pseudotumours present in other areas of the body. Conclusions The inability to successfully transmit both parasites in this study suggests that either host detachment combined with a period of independent development or an alternate host is required to complete the life cycle for X-cell parasites. Phylogenetic analyses of SSU rDNA confirm a monophyletic grouping for all sequenced X-cell parasites, but do not robustly support their placement within any established protist phylum. Analysis of SSU rDNA from X-cells in Japanese flatfish reveals that the same parasite can infect more than one species of fish. PMID:21299903

A moderate increase in ambient temperature modulates the Atlantic cod (Gadus morhua) spleen transcriptome response to intraperitoneal viral mimic injection

PubMed Central

2012-01-01

Background Atlantic cod (Gadus morhua) reared in sea-cages can experience large variations in temperature, and these have been shown to affect their immune function. We used the new 20K Atlantic cod microarray to investigate how a water temperature change which, simulates that seen in Newfoundland during the spring-summer (i.e. from 10°C to 16°C, 1°C increase every 5 days) impacted the cod spleen transcriptome response to the intraperitoneal injection of a viral mimic (polyriboinosinic polyribocytidylic acid, pIC). Results The temperature regime alone did not cause any significant increases in plasma cortisol levels and only minor changes in spleen gene transcription. However, it had a considerable impact on the fish spleen transcriptome response to pIC [290 and 339 significantly differentially expressed genes between 16°C and 10°C at 6 and 24 hours post-injection (HPI), respectively]. Seventeen microarray-identified transcripts were selected for QPCR validation based on immune-relevant functional annotations. Fifteen of these transcripts (i.e. 88%), including DHX58, STAT1, IRF7, ISG15, RSAD2 and IκBα, were shown by QPCR to be significantly induced by pIC. Conclusions The temperature increase appeared to accelerate the spleen immune transcriptome response to pIC. We found 41 and 999 genes differentially expressed between fish injected with PBS vs. pIC at 10°C and sampled at 6HPI and 24HPI, respectively. In contrast, there were 656 and 246 genes differentially expressed between fish injected with PBS vs. pIC at 16°C and sampled at 6HPI and 24HPI, respectively. Our results indicate that the modulation of mRNA expression of genes belonging to the NF-κB and type I interferon signal transduction pathways may play a role in controlling temperature-induced changes in the spleen’s transcript expression response to pIC. Moreover, interferon effector genes such as ISG15 and RSAD2 were differentially expressed between fish injected with pIC at 10°C vs. 16°C at 6HPI. These results substantially increase our understanding of the genes and molecular pathways involved in the negative impacts of elevated ambient temperature on fish health, and may also be valuable to our understanding of how accelerated global climate change could impact cold-water marine finfish species. PMID:22928584

A moderate increase in ambient temperature modulates the Atlantic cod (Gadus morhua) spleen transcriptome response to intraperitoneal viral mimic injection.

PubMed

Hori, Tiago S; Gamperl, A Kurt; Booman, Marije; Nash, Gordon W; Rise, Matthew L

2012-08-28

Atlantic cod (Gadus morhua) reared in sea-cages can experience large variations in temperature, and these have been shown to affect their immune function. We used the new 20K Atlantic cod microarray to investigate how a water temperature change which, simulates that seen in Newfoundland during the spring-summer (i.e. from 10°C to 16°C, 1°C increase every 5 days) impacted the cod spleen transcriptome response to the intraperitoneal injection of a viral mimic (polyriboinosinic polyribocytidylic acid, pIC). The temperature regime alone did not cause any significant increases in plasma cortisol levels and only minor changes in spleen gene transcription. However, it had a considerable impact on the fish spleen transcriptome response to pIC [290 and 339 significantly differentially expressed genes between 16°C and 10°C at 6 and 24 hours post-injection (HPI), respectively]. Seventeen microarray-identified transcripts were selected for QPCR validation based on immune-relevant functional annotations. Fifteen of these transcripts (i.e. 88%), including DHX58, STAT1, IRF7, ISG15, RSAD2 and IκBα, were shown by QPCR to be significantly induced by pIC. The temperature increase appeared to accelerate the spleen immune transcriptome response to pIC. We found 41 and 999 genes differentially expressed between fish injected with PBS vs. pIC at 10°C and sampled at 6HPI and 24HPI, respectively. In contrast, there were 656 and 246 genes differentially expressed between fish injected with PBS vs. pIC at 16°C and sampled at 6HPI and 24HPI, respectively. Our results indicate that the modulation of mRNA expression of genes belonging to the NF-κB and type I interferon signal transduction pathways may play a role in controlling temperature-induced changes in the spleen's transcript expression response to pIC. Moreover, interferon effector genes such as ISG15 and RSAD2 were differentially expressed between fish injected with pIC at 10°C vs. 16°C at 6HPI. These results substantially increase our understanding of the genes and molecular pathways involved in the negative impacts of elevated ambient temperature on fish health, and may also be valuable to our understanding of how accelerated global climate change could impact cold-water marine finfish species.

The winter pack-ice zone provides a sheltered but food-poor habitat for larval Antarctic krill.

PubMed

Meyer, Bettina; Freier, Ulrich; Grimm, Volker; Groeneveld, Jürgen; Hunt, Brian P V; Kerwath, Sven; King, Rob; Klaas, Christine; Pakhomov, Evgeny; Meiners, Klaus M; Melbourne-Thomas, Jessica; Murphy, Eugene J; Thorpe, Sally E; Stammerjohn, Sharon; Wolf-Gladrow, Dieter; Auerswald, Lutz; Götz, Albrecht; Halbach, Laura; Jarman, Simon; Kawaguchi, So; Krumpen, Thomas; Nehrke, Gernot; Ricker, Robert; Sumner, Michael; Teschke, Mathias; Trebilco, Rowan; Yilmaz, Noyan I

2017-12-01

A dominant Antarctic ecological paradigm suggests that winter sea ice is generally the main feeding ground for krill larvae. Observations from our winter cruise to the southwest Atlantic sector of the Southern Ocean contradict this view and present the first evidence that the pack-ice zone is a food-poor habitat for larval development. In contrast, the more open marginal ice zone provides a more favourable food environment for high larval krill growth rates. We found that complex under-ice habitats are, however, vital for larval krill when water column productivity is limited by light, by providing structures that offer protection from predators and to collect organic material released from the ice. The larvae feed on this sparse ice-associated food during the day. After sunset, they migrate into the water below the ice (upper 20 m) and drift away from the ice areas where they have previously fed. Model analyses indicate that this behaviour increases both food uptake in a patchy food environment and the likelihood of overwinter transport to areas where feeding conditions are more favourable in spring.

50 CFR 622.208 - Minimum mesh size applicable to rock shrimp off Georgia and Florida.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 50 Wildlife and Fisheries 12 2013-10-01 2013-10-01 false Minimum mesh size applicable to rock... mesh size applicable to rock shrimp off Georgia and Florida. (a) The minimum mesh size for the cod end of a rock shrimp trawl net in the South Atlantic EEZ off Georgia and Florida is 17/8 inches (4.8 cm...

50 CFR 622.208 - Minimum mesh size applicable to rock shrimp off Georgia and Florida.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 50 Wildlife and Fisheries 12 2014-10-01 2014-10-01 false Minimum mesh size applicable to rock... mesh size applicable to rock shrimp off Georgia and Florida. (a) The minimum mesh size for the cod end of a rock shrimp trawl net in the South Atlantic EEZ off Georgia and Florida is 17/8 inches (4.8 cm...

Food webs and carbon flux in the Barents Sea

NASA Astrophysics Data System (ADS)

Wassmann, Paul; Reigstad, Marit; Haug, Tore; Rudels, Bert; Carroll, Michael L.; Hop, Haakon; Gabrielsen, Geir Wing; Falk-Petersen, Stig; Denisenko, Stanislav G.; Arashkevich, Elena; Slagstad, Dag; Pavlova, Olga

2006-10-01

Within the framework of the physical forcing, we describe and quantify the key ecosystem components and basic food web structure of the Barents Sea. Emphasis is given to the energy flow through the ecosystem from an end-to-end perspective, i.e. from bacteria, through phytoplankton and zooplankton to fish, mammals and birds. Primary production in the Barents is on average 93 g C m -2 y -1, but interannually highly variable (±19%), responding to climate variability and change (e.g. variations in Atlantic Water inflow, the position of the ice edge and low-pressure pathways). The traditional focus upon large phytoplankton cells in polar regions seems less adequate in the Barents, as the cell carbon in the pelagic is most often dominated by small cells that are entangled in an efficient microbial loop that appears to be well coupled to the grazing food web. Primary production in the ice-covered waters of the Barents is clearly dominated by planktonic algae and the supply of ice biota by local production or advection is small. The pelagic-benthic coupling is strong, in particular in the marginal ice zone. In total 80% of the harvestable production is channelled through the deep-water communities and benthos. 19% of the harvestable production is grazed by the dominating copepods Calanus finmarchicus and C. glacialis in Atlantic or Arctic Water, respectively. These two species, in addition to capelin ( Mallotus villosus) and herring ( Clupea harengus), are the keystone organisms in the Barents that create the basis for the rich assemblage of higher trophic level organisms, facilitating one of the worlds largest fisheries (capelin, cod, shrimps, seals and whales). Less than 1% of the harvestable production is channelled through the most dominating higher trophic levels such as cod, harp seals, minke whales and sea birds. Atlantic cod, seals, whales, birds and man compete for harvestable energy with similar shares. Climate variability and change, differences in recruitment, variable resource availability, harvesting restrictions and management schemes will influence the resource exploitation between these competitors, that basically depend upon the efficient energy transfer from primary production to highly successful, lipid-rich zooplankton and pelagic fishes.

The origins of intensive marine fishing in medieval Europe: the English evidence.

PubMed

Barrett, James H; Locker, Alison M; Roberts, Callum M

2004-12-07

The catastrophic impact of fishing pressure on species such as cod and herring is well documented. However, the antiquity of their intensive exploitation has not been established. Systematic catch statistics are only available for ca.100 years, but large-scale fishing industries existed in medieval Europe and the expansion of cod fishing from the fourteenth century (first in Iceland, then in Newfoundland) played an important role in the European colonization of the Northwest Atlantic. History has demonstrated the scale of these late medieval and post-medieval fisheries, but only archaeology can illuminate earlier practices. Zooarchaeological evidence shows that the clearest changes in marine fishing in England between AD 600 and 1600 occurred rapidly around AD 1000 and involved large increases in catches of herring and cod. Surprisingly, this revolution predated the documented post-medieval expansion of England's sea fisheries and coincided with the Medieval Warm Period--when natural herring and cod productivity was probably low in the North Sea. This counterintuitive discovery can be explained by the concurrent rise of urbanism and human impacts on freshwater ecosystems. The search for 'pristine' baselines regarding marine ecosystems will thus need to employ medieval palaeoecological proxies in addition to recent fisheries data and early modern historical records.

The origins of intensive marine fishing in medieval Europe: the English evidence.

PubMed Central

Barrett, James H.; Locker, Alison M.; Roberts, Callum M.

2004-01-01

The catastrophic impact of fishing pressure on species such as cod and herring is well documented. However, the antiquity of their intensive exploitation has not been established. Systematic catch statistics are only available for ca.100 years, but large-scale fishing industries existed in medieval Europe and the expansion of cod fishing from the fourteenth century (first in Iceland, then in Newfoundland) played an important role in the European colonization of the Northwest Atlantic. History has demonstrated the scale of these late medieval and post-medieval fisheries, but only archaeology can illuminate earlier practices. Zooarchaeological evidence shows that the clearest changes in marine fishing in England between AD 600 and 1600 occurred rapidly around AD 1000 and involved large increases in catches of herring and cod. Surprisingly, this revolution predated the documented post-medieval expansion of England's sea fisheries and coincided with the Medieval Warm Period--when natural herring and cod productivity was probably low in the North Sea. This counterintuitive discovery can be explained by the concurrent rise of urbanism and human impacts on freshwater ecosystems. The search for 'pristine' baselines regarding marine ecosystems will thus need to employ medieval palaeoecological proxies in addition to recent fisheries data and early modern historical records. PMID:15590590

Random repeated cross sectional study on breeding site characterization of Anopheles sinensis larvae in distinct villages of Yongcheng City, People's Republic of China

PubMed Central

2012-01-01

Background Characterizing the breeding site of Anopheles sinensis is of major importance for the transition from malaria control to elimination in China. However, little information is available especially regarding the characteristics and influencing factors of breeding sites of An. sinensis in Yongcheng City, a representative region of unstable malaria transmission in the Huang-Huai River region of central China. The aims of this study were to determine the breeding site characteristics of An. sinensis and related environmental and physicochemical parameters, to find out which breeding site characteristics could best explain the presence of An. sinensis larvae, and to determine whether the breeding habit of An. sinensis has changed or not. Methods Random repeated cross sectional study was undertaken in six villages of the Yongcheng city characterized by different levels of the historical incidence of P. vivax malaria. The potential breeding sites of An. sinensis larvae in each village were examined twice per month both in the household courtyards and the village surroundings. The larval sampling was done by the standard dipping method. Some important breeding site characterizations were recorded and characterized. The anopheline mosquito larvae and emerged adults were identified to the species level morphologically and to sub-species by the ribosomal DNA PCR technique. Chi-square analysis and logistic regression analysis were applied to determine the importance of factors for explaining the presence or absence of An. sinensis larvae. Results According to the ribosomal DNA PCR assay, all sampled anopheline mosquito larvae and emerged adults belonged to An. sinensis. Only 3 containers that were sampled from the household courtyards were found to contain An. sinensis larvae. There were no differences in the species composition of mosquito larvae among containers that contained water in the household courtyards (P > 0.05). An. sinensis larvae were shown to be present in a total of 60 breeding sites in the village surroundings, this included 8 (13.3%) river fringes, 26 (43.3%) ponds, 23 (38.3%) puddles, and 3 (5.0%) irrigation/drainage ditches. Logistic regression analysis revealed that the breeding site type, water depth, chemical oxygen demand (COD), ammonia nitrogen, and sulphate were found to be the key factors determining the presence of An. sinensis larvae. Approximately 94.9% of An. sinensis larvae inhabited relatively large and medium-sized water bodies, with depths between 0.5 m and 1.0 m (73.3%), COD lower than 2 mg/L (75%), ammonia nitrogen lower than 0.4 mg/L (86.7%), and sulphate lower than 150 mg/L (58.3%), respectively. Conclusion These results indicate that the majority of An. sinensis larval breeding sites were relatively large and medium-sized water bodies with depths between 0.5 m and 1.0 m, and containing low levels of COD, ammonia nitrogen, and sulphate, respectively. For effective An. sinensis larval control, the type of breeding site, water depth, COD, ammonia nitrogen, and sulphate should be given higher priority over other factors in areas where it is the primary vector. PMID:22444032

Daytime variations of absorbing aerosols above clouds in the southeast Atlantic

NASA Astrophysics Data System (ADS)

Chang, Y. Y.; Christopher, S. A.

2016-12-01

The daytime variation of aerosol optical depth (AOD) above maritime stratocumulus clouds in the southeast Atlantic is investigated by merging geostationary data from the Spinning Enhanced Visible and Infrared Imager (SEVIRI) with NASA A-Train data sets. SEVIRI's 15-minute above cloud AOD and below aerosol cloud optical depth (COD) retrieval provides the opportunity to assess their direct radiative forcing using actual cloud and aerosol properties instead of using fixed values from polar-orbiting measurements. The impact of overlying aerosols above clouds on the cloud mask products are compared with active spaceborne lidar to examine the performance of the product. Uncertainty analyses of aerosol properties on the estimation of optical properties and radiative forcing are addressed.

Archived DNA reveals fisheries and climate induced collapse of a major fishery.

PubMed

Bonanomi, Sara; Pellissier, Loïc; Therkildsen, Nina Overgaard; Hedeholm, Rasmus Berg; Retzel, Anja; Meldrup, Dorte; Olsen, Steffen Malskær; Nielsen, Anders; Pampoulie, Christophe; Hemmer-Hansen, Jakob; Wisz, Mary Susanne; Grønkjær, Peter; Nielsen, Einar Eg

2015-10-22

Fishing and climate change impact the demography of marine fishes, but it is generally ignored that many species are made up of genetically distinct locally adapted populations that may show idiosyncratic responses to environmental and anthropogenic pressures. Here, we track 80 years of Atlantic cod (Gadus morhua) population dynamics in West Greenland using DNA from archived otoliths in combination with fish population and niche based modeling. We document how the interacting effects of climate change and high fishing pressure lead to dramatic spatiotemporal changes in the proportions and abundance of different genetic populations, and eventually drove the cod fishery to a collapse in the early 1970s. Our results highlight the relevance of fisheries management at the level of genetic populations under future scenarios of climate change.

Archived DNA reveals fisheries and climate induced collapse of a major fishery

PubMed Central

Bonanomi, Sara; Pellissier, Loïc; Therkildsen, Nina Overgaard; Hedeholm, Rasmus Berg; Retzel, Anja; Meldrup, Dorte; Olsen, Steffen Malskær; Nielsen, Anders; Pampoulie, Christophe; Hemmer-Hansen, Jakob; Wisz, Mary Susanne; Grønkjær, Peter; Nielsen, Einar Eg

2015-01-01

Fishing and climate change impact the demography of marine fishes, but it is generally ignored that many species are made up of genetically distinct locally adapted populations that may show idiosyncratic responses to environmental and anthropogenic pressures. Here, we track 80 years of Atlantic cod (Gadus morhua) population dynamics in West Greenland using DNA from archived otoliths in combination with fish population and niche based modeling. We document how the interacting effects of climate change and high fishing pressure lead to dramatic spatiotemporal changes in the proportions and abundance of different genetic populations, and eventually drove the cod fishery to a collapse in the early 1970s. Our results highlight the relevance of fisheries management at the level of genetic populations under future scenarios of climate change. PMID:26489934

Archived DNA reveals fisheries and climate induced collapse of a major fishery

NASA Astrophysics Data System (ADS)

Bonanomi, Sara; Pellissier, Loïc; Therkildsen, Nina Overgaard; Hedeholm, Rasmus Berg; Retzel, Anja; Meldrup, Dorte; Olsen, Steffen Malskær; Nielsen, Anders; Pampoulie, Christophe; Hemmer-Hansen, Jakob; Wisz, Mary Susanne; Grønkjær, Peter; Nielsen, Einar Eg

2015-10-01

Fishing and climate change impact the demography of marine fishes, but it is generally ignored that many species are made up of genetically distinct locally adapted populations that may show idiosyncratic responses to environmental and anthropogenic pressures. Here, we track 80 years of Atlantic cod (Gadus morhua) population dynamics in West Greenland using DNA from archived otoliths in combination with fish population and niche based modeling. We document how the interacting effects of climate change and high fishing pressure lead to dramatic spatiotemporal changes in the proportions and abundance of different genetic populations, and eventually drove the cod fishery to a collapse in the early 1970s. Our results highlight the relevance of fisheries management at the level of genetic populations under future scenarios of climate change.

Earth Observation

NASA Image and Video Library

2011-06-27

ISS028-E-009979 (27 June 2011) --- The Massachusetts coastline is featured in this image photographed by an Expedition 28 crew member on the International Space Station. The Crew Earth Observations team at NASA Johnson Space Center sends specific ground targets for photography up to the station crew on a daily basis, but sometimes the crew takes imagery on their own of striking displays visible from orbit. One such display, often visible to the ISS crew due to their ability to look outwards at angles between 0 and 90 degrees, is sunglint on the waters of Earth. Sunglint is caused by sunlight reflecting off of a water surface?much as light reflects from a mirror?directly towards the observer. Roughness variations of the water surface scatter the light, blurring the reflection and producing the typical silvery sheen of the sunglint area. The point of maximum sunglint is centered within Cape Cod Bay, the body of water partially enclosed by the ?hook? of Cape Cod in Massachusetts (bottom). Cape Cod was formally designated a National Seashore in 1966. Sunglint off the water provides sharp contrast with the coastline and the nearby islands of Martha?s Vineyard and Nantucket (lower left), both popular destinations for tourists and summer residents. To the north, rocky Cape Ann extends out into the Atlantic Ocean; the border with New Hampshire is located approximately 30 kilometers up the coast. Further to the west, the eastern half of Long Island, New York is visible emerging from extensive cloud cover over the mid-Atlantic and Midwestern States. Persistent storm tracks had been contributing to record flooding along rivers in the Midwest at the time this image was taken in late June 2011. Thin blue layers of the atmosphere, contrasted against the darkness of space, are visible extending along the Earth?s curvature at top.

Ocean warming and acidification modulate energy budget and gill ion regulatory mechanisms in Atlantic cod (Gadus morhua).

PubMed

Kreiss, C M; Michael, K; Lucassen, M; Jutfelt, F; Motyka, R; Dupont, S; Pörtner, H-O

2015-10-01

Ocean warming and acidification are threatening marine ecosystems. In marine animals, acidification is thought to enhance ion regulatory costs and thereby baseline energy demand, while elevated temperature also increases baseline metabolic rate. Here we investigated standard metabolic rates (SMR) and plasma parameters of Atlantic cod (Gadus morhua) after 3-4 weeks of exposure to ambient and future PCO2 levels (550, 1200 and 2200 µatm) and at two temperatures (10, 18 °C). In vivo branchial ion regulatory costs were studied in isolated, perfused gill preparations. Animals reared at 18 °C responded to increasing CO2 by elevating SMR, in contrast to specimens at 10 °C. Isolated gills at 10 °C and elevated PCO2 (≥1200 µatm) displayed increased soft tissue mass, in parallel to increased gill oxygen demand, indicating an increased fraction of gill in whole animal energy budget. Altered gill size was not found at 18 °C, where a shift in the use of ion regulation mechanisms occurred towards enhanced Na(+)/H(+)-exchange and HCO3 (-) transport at high PCO2 (2200 µatm), paralleled by higher Na(+)/K(+)-ATPase activities. This shift did not affect total gill energy consumption leaving whole animal energy budget unaffected. Higher Na(+)/K(+)-ATPase activities in the warmth might have compensated for enhanced branchial permeability and led to reduced plasma Na(+) and/or Cl(-) concentrations and slightly lowered osmolalities seen at 18 °C and 550 or 2200 µatm PCO2 in vivo. Overall, the gill as a key ion regulation organ seems to be highly effective in supporting the resilience of cod to effects of ocean warming and acidification.

Larval dispersion of the estuarine crab Neohelice granulata in coastal marine waters of the Southwest Atlantic

NASA Astrophysics Data System (ADS)

Bas, Claudia; Luppi, Tomás; Spivak, Eduardo; Schejter, Laura

2009-08-01

The estuarine brachyuran crab Neohelice granulata export their larvae from the parental intertidal population of the Mar Chiquita coastal lagoon, and probably other populations, to marine waters. The degree of larval dispersion or self-recruitment of populations is unknown. We evaluated the presence of all larval stages of N. granulata in coastal waters of Argentina between 37.9° and 35.8° S, at two different spatial scales: a broad scale of tens to hundreds of kilometers from the Río de la Plata estuary in the north, to Mar Chiquita lagoon in the south, and a small scale of hundreds of meters to some kilometers around the mouth of Mar Chiquita, during spring and summer. Additionally, we registered the larval composition and density at San Clemente creek population, in Samborombon Bay (Río de la Plata estuary), every 3 h along a 30-hour period. Evidence indicates that larval release of N. granulata is temporally synchronized with nocturnal ebb tides and all development from Zoea I to Zoea IV occur in areas close to the parental population, even with very different oceanographic characteristics. A possible mechanism based on salinity selection and wind-driven transport is proposed for such behavior, and some considerations related to the connectivity of present populations are made.

The conserved Phe GH5 of importance for hemoglobin intersubunit contact is mutated in gadoid fish

PubMed Central

2014-01-01

Background Functionality of the tetrameric hemoglobin molecule seems to be determined by a few amino acids located in key positions. Oxygen binding encompasses structural changes at the interfaces between the α1β2 and α2β1 dimers, but also subunit interactions are important for the oxygen binding affinity and stability. The latter packing contacts include the conserved Arg B12 interacting with Phe GH5, which is replaced by Leu and Tyr in the αA and αD chains, respectively, of birds and reptiles. Results Searching all known hemoglobins from a variety of gnathostome species (jawed vertebrates) revealed the almost invariant Arg B12 coded by the AGG triplet positioned at an exon-intron boundary. Rare substitutions of Arg B12 in the gnathostome β globins were found in pig, tree shrew and scaled reptiles. Phe GH5 is also highly conserved in the β globins, except for the Leu replacement in the β1 globin of five marine gadoid species, gilthead seabream and the Comoran coelacanth, while Cys and Ile were found in burbot and yellow croaker, respectively. Atlantic cod β1 globin showed a Leu/Met polymorphism at position GH5 dominated by the Met variant in northwest-Atlantic populations that was rarely found in northeast-Atlantic cod. Site-specific analyses identified six consensus codons under positive selection, including 122β(GH5), indicating that the amino acid changes identified at this position may offer an adaptive advantage. In fact, computational mutation analysis showed that the replacement of Phe GH5 with Leu or Cys decreased the number of van der Waals contacts essentially in the deoxy form that probably causes a slight increase in the oxygen binding affinity. Conclusions The almost invariant Arg B12 and the AGG codon seem to be important for the packing contacts and pre-mRNA processing, respectively, but the rare mutations identified might be beneficial. The Leu122β1(GH5)Met and Met55β1(D6)Val polymorphisms in Atlantic cod hemoglobin modify the intradimer contacts B12-GH5 and H2-D6, while amino acid replacements at these positions in avian hemoglobin seem to be evolutionary adaptive in air-breathing vertebrates. The results support the theory that adaptive changes in hemoglobin functions are caused by a few substitutions at key positions. PMID:24655798

Flesh quality and biochemistry of light-manipulated Atlantic cod (Gadus morhua) and the significance of collagen cross-links on fillet firmness and gaping.

PubMed

Hagen, Ørjan; Johnsen, Chris André

2016-01-01

The aim of our study was to investigate whether light-manipulation, causing accelerated or delayed maturation, could be used as a tool to improve fillet gaping score and texture of farmed cod (Gadus morhua L.) harvested during summer. Control and accelerated groups had completed spawning by the time of harvest, and expressed sexual dimorphism in various biometric and flesh quality parameters. Pyridinoline cross-links, a key biochemical parameter investigated, were positively correlated with texture (r(2) = 0.4), as also were cathepsin B&L and sex. Gaping was also impacted by pyridinoline cross-links, together with body mass and maturation. Interestingly, the level of gaping was significantly reduced with a pyridinoline cross-link concentration of >2500 pmols g(-1) dry mass. In conclusion, light-manipulation can be used as a tool to improve flesh texture of farmed cod with a low gaping score, but with compromise of increased dress out percentage for the accelerated group. Copyright © 2015 Elsevier Ltd. All rights reserved.

Seasonal distribution and abundance of fishes and decapod crustaceans in a Cape Cod estuary

USGS Publications Warehouse

Able, K.W.; Fahay, M.P.; Heck, K.L.; Roman, C.T.; Lazzari, M.A.; Kaiser, S.C.

2002-01-01

Sampling in several habitat types (sand/mud, eelgrass, sand, gravel, macroalgae/mud) during all seasons with a variety of gears in Nauset Marsh, Massachusetts during 1985-1987 found a fauna consisting of 35 fish and 10 decapod crustacean species. Although most of the abundant species were found in several habitat types, species richness and habitat use appeared to be highest for vegetated habitats (eelgrass, macroalgae). The fishes and decapods were numerically dominated by cold-water taxa; however, numerous fish species, represented by rare individuals of predominantly southern forms, enriched the fauna. Species composition of Nauset Marsh could be distinguished from estuaries south of Cape Cod and even from the south shore of the cape. Both fishes and decapods were most abundant during the summer, apparently due to the contributions from spring and summer spawning in the estuary and the adjacent Atlantic Ocean. The location of Nauset Marsh and other estuaries on Cape Cod provide a unique opportunity to evaluate the importance of this region as a faunal boundary to estuarine species.

Evaluating the impact of above-cloud aerosols on cloud optical depth retrievals from MODIS

NASA Astrophysics Data System (ADS)

Alfaro, Ricardo

Using two different operational Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical depth (COD) retrievals (visible and shortwave infrared), the impacts of above-cloud absorbing aerosols on the standard COD retrievals are evaluated. For fine-mode aerosol particles, aerosol optical depth (AOD) values diminish sharply from the visible to the shortwave infrared channels. Thus, a suppressed above-cloud particle radiance aliasing effect occurs for COD retrievals using shortwave infrared channels. Aerosol Index (AI) from the spatially and temporally collocated Ozone Monitoring Instrument (OMI) are used to identify above-cloud aerosol particle loading over the southern Atlantic Ocean, including both smoke and dust from the African sub-continent. MODIS and OMI Collocated Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO) data are used to constrain cloud phase and provide contextual above-cloud AOD values. The frequency of occurrence of above-cloud aerosols is depicted on a global scale for the spring and summer seasons from OMI and CALIOP, thus indicating the significance of the problem. Seasonal frequencies for smoke-over-cloud off the southwestern Africa coastline reach 20--50% in boreal summer. We find a corresponding low COD bias of 10--20% for standard MODIS COD retrievals when averaged OMI AI are larger than 1.0. No such bias is found over the Saharan dust outflow region off northern Africa, since both MODIS visible and shortwave in channels are vulnerable to dust particle aliasing, and thus a COD impact cannot be isolated with this method. A similar result is found for a smaller domain, in the Gulf of Tonkin region, from smoke advection over marine stratocumulus clouds and outflow into the northern South China Sea in spring. This study shows the necessity of accounting for the above-cloud aerosol events for future studies using standard MODIS cloud products in biomass burning outflow regions, through the use of collocated OMI AI and supplementary MODIS shortwave infrared COD products.

Historical Arctic Logbooks Provide Insights into Past Diets and Climatic Responses of Cod

PubMed Central

Townhill, Bryony L.; Maxwell, David; Engelhard, Georg H.; Simpson, Stephen D.; Pinnegar, John K.

2015-01-01

Gadus morhua (Atlantic cod) stocks in the Barents Sea are currently at levels not seen since the 1950s. Causes for the population increase last century, and understanding of whether such large numbers will be maintained in the future, are unclear. To explore this, we digitised and interrogated historical cod catch and diet datasets from the Barents Sea. Seventeen years of catch data and 12 years of prey data spanning 1930–1959 cover unexplored spatial and temporal ranges, and importantly capture the end of a previous warm period, when temperatures were similar to those currently being experienced. This study aimed to evaluate cod catch per unit effort and prey frequency in relation to spatial, temporal and environmental variables. There was substantial spatio-temporal heterogeneity in catches through the time series. The highest catches were generally in the 1930s and 1940s, although at some localities more cod were recorded late in the 1950s. Generalized Additive Models showed that environmental, spatial and temporal variables are all valuable descriptors of cod catches, with the highest occurring from 15–45°E longitude and 73–77°N latitude, at bottom temperatures between 2 and 4°C and at depths between 150 and 250 m. Cod diets were highly variable during the study period, with frequent changes in the relative frequencies of different prey species, particularly Mallotus villosus (capelin). Environmental variables were particularly good at describing the importance of capelin and Clupea harengus (herring) in the diet. These new analyses support existing knowledge about how the ecology of the region is controlled by climatic variability. When viewed in combination with more recent data, these historical relationships will be valuable in forecasting the future of Barents Sea fisheries, and in understanding how environments and ecosystems may respond. PMID:26331271

Space Radar Image of Cape Cod, Massachusetts

NASA Technical Reports Server (NTRS)

1994-01-01

This spaceborne radar image shows the famous 'hook' of Cape Cod, Massachusetts. The Cape, which juts out into the Atlantic Ocean about 100 kilometers (62 miles) southeast of Boston, actually consists of sandy debris left behind by the great continental ice sheets when they last retreated from southern New England about 20,000 years ago. Today's landscape consists of sandy forests, fields of scrub oak and other bushes and grasses, salt marshes, freshwater ponds, as well as the famous beaches and sand dunes. In this image, thickly forested areas appear green, marshes are dark blue, ponds and sandy areas are black, and developed areas are mostly pink. The dark L-shape in the lower center is the airport runways in Hyannis, the Cape's largest town. The dark X-shape left of the center is Otis Air Force Base. The Cape Cod Canal, above and left of center, connects Buzzards Bay on the left with Cape Cod Bay on the right. The northern tip of the island of Martha's Vineyard is seen in the lower left. The tip of the Cape, in the upper right, includes the community of Provincetown, which appears pink, and the protected National Seashore areas of sand dunes that parallel the Atlantic coast east of Provincetown. Scientists are using radar images like this one to study delicate coastal environments and the effects of human activities on the ecosystem and landscape. This image was acquired by Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SIR-C/X-SAR) onboard the space shuttle Endeavour on April 15, 1994. The image is 81.7 kilometers by 43.1 kilometers (50.7 miles by 26.7 miles) and is centered at 41.8 degrees north latitude, 70.3 degrees west longitude. North is toward the upper right. The colors are assigned to different radar frequencies and polarizations of the radar as follows: red is L-band, horizontally transmitted and received; green is C-band, horizontally transmitted, vertically received; and blue is C-band, horizontally transmitted and received. SIR-C/X-SAR, a joint mission of the German, Italian and United States space agencies, is part of NASA's Mission to Planet Earth program.

Black-legged kittiwakes as messengers of Atlantification in the Arctic.

PubMed

Vihtakari, Mikko; Welcker, Jorg; Moe, Børge; Chastel, Olivier; Tartu, Sabrina; Hop, Haakon; Bech, Claus; Descamps, Sébastien; Gabrielsen, Geir Wing

2018-01-19

Climate warming is rapidly altering marine ecosystems towards a more temperate state on the European side of the Arctic. However, this "Atlantification" has rarely been confirmed, as long-term datasets on Arctic marine organisms are scarce. We present a 19-year time series (1982-2016) of diet samples from black-legged kittiwakes as an indicator of the changes in a high Arctic marine ecosystem (Kongsfjorden, Svalbard). Our results highlight a shift from Arctic prey dominance until 2006 to a more mixed diet with high contribution of Atlantic fishes. Capelin, an Atlantic species, dominated the diet composition in 2007, marking a shift in the food web. The occurrence of polar cod, a key Arctic fish species, positively correlated with sea ice index, whereas Atlantic species demonstrated the opposite correlation indicating that the diet shift was likely connected with recent climate warming. Kittiwakes, which gather available fish and zooplankton near the sea surface to feed their chicks, can act as messengers of ecosystem change. Changes in their diet reveal that the Kongsfjord system has drifted in an Atlantic direction over the last decade.

Embryogenesis and Larval Biology of the Cold-Water Coral Lophelia pertusa

PubMed Central

Strömberg, Susanna M.; Dahl, Mikael P.; Lundälv, Tomas; Brooke, Sandra

2014-01-01

Cold-water coral reefs form spectacular and highly diverse ecosystems in the deep sea but little is known about reproduction, and virtually nothing about the larval biology in these corals. This study is based on data from two locations of the North East Atlantic and documents the first observations of embryogenesis and larval development in Lophelia pertusa, the most common framework-building cold-water scleractinian. Embryos developed in a more or less organized radial cleavage pattern from ∼160 µm large neutral or negatively buoyant eggs, to 120–270 µm long ciliated planulae. Embryogenesis was slow with cleavage occurring at intervals of 6–8 hours up to the 64-cell stage. Genetically characterized larvae were sexually derived, with maternal and paternal alleles present. Larvae were active swimmers (0.5 mm s−1) initially residing in the upper part of the water column, with bottom probing behavior starting 3–5 weeks after fertilization. Nematocysts had developed by day 30, coinciding with peak bottom-probing behavior, and possibly an indication that larvae are fully competent to settle at this time. Planulae survived for eight weeks under laboratory conditions, and preliminary results indicate that these planulae are planktotrophic. The late onset of competency and larval longevity suggests a high dispersal potential. Understanding larval biology and behavior is of paramount importance for biophysical modeling of larval dispersal, which forms the basis for predictions of connectivity among populations. PMID:25028936

Fathers in hot water: rising sea temperatures and a Northeastern Atlantic pipefish baby boom

PubMed Central

Kirby, Richard R; Johns, David G; Lindley, John A

2006-01-01

We report unprecedented numbers of juvenile snake pipefish, Entelurus aequoreus, in continuous plankton records of the Northeastern Atlantic since 2002. Increased sea surface temperatures (SSTs) in the Northern Hemisphere, linked to global warming, are a likely cause. Analysis of a long-term time-series of SST data in the Northeastern Atlantic shows a rise in winter, spring and summer sea temperatures (January–September), when the eggs of E. aqueoreus, which are brooded by the male, are developing and the larvae are growing in plankton. From what is known of the reproductive biology of closely related species, we suggest that the increased abundance of larval and juvenile E. aequoreus in the plankton as far west as the Mid-Atlantic Ridge may reflect the impact of temperature on abundance, through its effects on the operational sex ratio and potential reproductive rate, the onset of the breeding season and juvenile survival in this sex role reversed fish. PMID:17148298

Use of existing hydrographic infrastructure to forecast the environmental spawning conditions for Eastern Baltic cod.

PubMed

von Dewitz, Burkhard; Tamm, Susanne; Höflich, Katharina; Voss, Rüdiger; Hinrichsen, Hans-Harald

2018-01-01

The semi-enclosed nature and estuarine characteristics, together with its strongly alternating bathymetry, make the Baltic Sea prone to much stronger interannual variations in the abiotic environment, than other spawning habitats of Atlantic cod (Gadus morhua). Processes determining salinity and oxygen conditions in the basins are influenced both by long term gradual climate change, e.g. global warming, but also by short-term meteorological variations and events. Specifically one main factor influencing cod spawning conditions, the advection of highly saline and well-oxygenated water masses from the North Sea, is observed in irregular frequencies and causes strong interannual variations in stock productivity. This study investigates the possibility to use the available hydrographic process knowledge to predict the annual spawning conditions for Eastern Baltic cod in its most important spawning ground, the Bornholm Basin, only by salinity measurements from a specific location in the western Baltic. Such a prediction could serve as an environmental early warning indicator to inform stock assessment and management. Here we used a hydrodynamic model to hindcast hydrographic property fields for the last 40+ years. High and significant correlations were found for months early in the year between the 33m salinity level in the Arkona Basin and the oxygen-dependent cod spawning environment in the Bornholm Basin. Direct prediction of the Eastern Baltic cod egg survival in the Bornholm Basin based on salinity values in the Arkona Basin at the 33 m depth level is shown to be possible for eggs spawned by mid-age and young females, which currently predominate the stock structure. We recommend to routinely perform short-term predictions of the Eastern Baltic cod spawning environment, in order to generate environmental information highly relevant for stock dynamics. Our statistical approach offers the opportunity to make best use of permanently existing infrastructure in the western Baltic to timely provide scientific knowledge on the spawning conditions of Eastern Baltic cod. Furthermore it could be a tool to assist ecosystem-based fisheries management with a cost-effective implementation by including the short term predictions as a simple indicator in the annual assessments.

Use of existing hydrographic infrastructure to forecast the environmental spawning conditions for Eastern Baltic cod

PubMed Central

Tamm, Susanne; Höflich, Katharina; Voss, Rüdiger; Hinrichsen, Hans-Harald

2018-01-01

The semi-enclosed nature and estuarine characteristics, together with its strongly alternating bathymetry, make the Baltic Sea prone to much stronger interannual variations in the abiotic environment, than other spawning habitats of Atlantic cod (Gadus morhua). Processes determining salinity and oxygen conditions in the basins are influenced both by long term gradual climate change, e.g. global warming, but also by short-term meteorological variations and events. Specifically one main factor influencing cod spawning conditions, the advection of highly saline and well-oxygenated water masses from the North Sea, is observed in irregular frequencies and causes strong interannual variations in stock productivity. This study investigates the possibility to use the available hydrographic process knowledge to predict the annual spawning conditions for Eastern Baltic cod in its most important spawning ground, the Bornholm Basin, only by salinity measurements from a specific location in the western Baltic. Such a prediction could serve as an environmental early warning indicator to inform stock assessment and management. Here we used a hydrodynamic model to hindcast hydrographic property fields for the last 40+ years. High and significant correlations were found for months early in the year between the 33m salinity level in the Arkona Basin and the oxygen-dependent cod spawning environment in the Bornholm Basin. Direct prediction of the Eastern Baltic cod egg survival in the Bornholm Basin based on salinity values in the Arkona Basin at the 33 m depth level is shown to be possible for eggs spawned by mid-age and young females, which currently predominate the stock structure. We recommend to routinely perform short-term predictions of the Eastern Baltic cod spawning environment, in order to generate environmental information highly relevant for stock dynamics. Our statistical approach offers the opportunity to make best use of permanently existing infrastructure in the western Baltic to timely provide scientific knowledge on the spawning conditions of Eastern Baltic cod. Furthermore it could be a tool to assist ecosystem-based fisheries management with a cost-effective implementation by including the short term predictions as a simple indicator in the annual assessments. PMID:29768443

Satellite monitoring temperature conditions spawning area of the Northeast Arctic cod in the Norwegian Sea and assessment its abundance

NASA Astrophysics Data System (ADS)

Vanyushin, George; Bulatova, Tatiana; Klochkov, Dmitriy; Troshkov, Anatoliy; Kruzhalov, Michail

2013-04-01

In this study, the attempt to consider the relationship between sea surface anomalies of temperature (SST anomalies °C) in spawning area of the Norwegian Arctic cod off the Lofoten islands in coastal zone of the Norwegian Sea and modern cod total stock biomass including forecasting assessment of future cod generation success. Continuous long-term database of the sea surface temperature (SST) was created on the NOAA satellites data. Mean monthly SST and SST anomalies are computed for the selected area on the basis of the weekly SST maps for the period of 1998-2012. These maps were plotted with the satellite SST data, as well as information of vessels, byoies and coastal stations. All data were classified by spawning seasons (March-April) and years. The results indicate that poor and low middle generations of cod (2001, 2006, 2007) occurred in years with negative or extremely high positive anomalies in the spawning area. The SST anomalies in years which were close to normal or some more normal significances provide conditions for appearance strong or very strong generations of cod (1998, 2000, 2002, 2004, 2005, 2006, 2008, 2009). Temperature conditions in concrete years influence on different indexes of cod directly. So, the mean temperature in spawning seasons in years 1999-2005 was ≈5,0°C and SST anomaly - +0,35°C, by the way average year significances indexes of cod were: total stock biomass - 1425,0 th.t., total spawning biomass - 460,0 th.t., recruitment (age 3+) - 535,0 mln. units and landings - 530,0 th.t. In spawning seasons 2006-2012 years the average data were following: mean SST ≈6,0°C, SST anomaly - +1,29°C, total stock biomass - 2185,0 th.t., total spawning biomass - 1211,0 th.t., recruitment (age 3+) - 821,0 mln. units and landings - 600,0 th.t. The SST and SST anomalies (the NOAA satellite data) characterize increase of decrease in input of warm Atlantic waters which form numerous eddies along the flows of the main warm currents thus creating favorable conditions for development of the cod larvae and fry and provide them with food stock, finally, direct influence on forming total stock biomass of cod and helping its population forecast. Key words: satellite monitoring of SST, Northeast Arctic cod, spawning area, maps of SST, prognosis.

The acute phase response of cod (Gadus morhua L.): expression of immune response genes.

PubMed

Audunsdottir, Sigridur S; Magnadottir, Bergljot; Gisladottir, Berglind; Jonsson, Zophonias O; Bragason, Birkir Th

2012-02-01

An acute phase response (APR) was experimentally induced in Atlantic cod (Gadus morhua L.) by intramuscular injection of turpentine oil. The change in the expression of immune related genes was monitored in the anterior kidney and the spleen over a period of 7 days. The genes examined were two types of pentraxins, apolipoprotein A1 (ApoA-I), the complement component C3, interleukin-1β (IL-1β), transferrin, cathelicidin, and hepcidin. All genes were constitutively expressed in both organs and their expression amplified by the turpentine injection. A pattern of response was observed both with respect to the organ preference and to the timing of a maximum response. The increased gene expression of the pentraxins, ApoA-I and C3 was restricted to the anterior kidney, the gene expression of IL-1β, cathelicidin, and transferrin increased in both organs, while hepcidin gene expression was only significantly increased in the spleen. The pentraxins and ApoA-I appear to be early mediators of APR in cod, possibly stimulating C3 and IL-1β response, while the antimicrobial peptides may play a minor role. The increase in transferrin gene expression in both organs, and apparent indifference to cortisol release associated with the turpentine injection, suggests that this could be a typical acute phase protein in cod. Copyright © 2011 Elsevier Ltd. All rights reserved.

Creatine kinase and mitochondrial respiration in hearts of trout, cod and freshwater turtle.

PubMed

Birkedal, R; Gesser, H

2003-08-01

The importance of the creatine kinase system in the cardiac muscle of ectothermic vertebrates is unclear. Mammalian cardiac muscle seems to be structurally organized in a manner that compartmentalizes the intracellular environment as evidenced by the substantially higher mitochondrial apparent Km for ADP in skinned fibres compared to isolated mitochondria. A mitochondrial fraction of creatine kinase is functionally coupled to the mitochondrial respiration, and the transport of phosphocreatine and creatine as energy equivalents of ATP and ADP, respectively, increases the mitochondrial apparent ADP affinity, i.e. lowers the Km. This function of creatine kinase seems to be absent in hearts of frog species. To find out whether this applies to hearts of ectothermic vertebrate species in general, we investigated the effect of creatine on the mitochondrial respiration of saponin-skinned fibres from the ventricle of rainbow trout, Atlantic cod and freshwater turtle. For all three species, the apparent Km for ADP appeared to be substantially higher than for isolated mitochondria. Creatine lowered this Km in trout and turtle, thus indicating a functional coupling between mitochondrial creatine kinase and respiration. However, creatine had no effect on Km in cod ventricle. In conclusion, the creatine kinase-system in trout and turtle hearts seems to fulfil the same functions as in the mammalian heart, i.e. facilitating energy transport and communication between cellular compartments. In cod heart, however, this does not seem to be the case.

Morphology of First Zoeal Stage of Four Genera of Alvinocaridid Shrimps from Hydrothermal Vents and Cold Seeps: Implications for Ecology, Larval Biology and Phylogeny

PubMed Central

Hernández-Ávila, Iván; Cambon-Bonavita, Marie-Anne; Pradillon, Florence

2015-01-01

Alvinocaridid shrimps are endemic species inhabiting hydrothermal vents and/or cold seeps. Although indirect evidences (genetic and lipid markers) suggest that their larval stages disperse widely and support large scale connectivity, larval life and mechanisms underlying dispersal are unknown in alvinocaridids. Here we provide for the first time detailed descriptions of the first larval stage (zoea I) of four alvinocaridid species: Rimicaris exoculata and Mirocaris fortunata from the Mid-Atlantic Ridge, Alvinocaris muricola from the Congo Basin and Nautilocaris saintlaurentae from the Western Pacific. The larvae were obtained from onboard hatching of brooding females (either at atmospheric pressure or at habitat pressure in hyperbaric chambers) and from the water column near adult habitats, sampled with plankton pumps or sediment traps. Major characteristics of the alvinocaridid larvae include undeveloped mandible and almost complete absence of setation in the inner margin of the mouth parts and maxillipeds. Although the larvae are very similar between the four species studied, some morphological features could be used for species identification. In addition, undeveloped mouthparts and the large amount of lipid reserves strongly support the occurrence of primary lecithotrophy in the early stage of alvinocaridids. Although lecithotrophy in decapod crustaceans is usually associated with abbreviated larval development, as a mechanism of larval retention, morphological and physiological evidences suggest the occurrence of an extended and lecithotrophic larval stage in the Alvinocarididae. These traits permit the colonization of widely dispersed and fragmented environments of hydrothermal vents and cold seeps. Distribution of larval traits along the phylogenetic reconstruction of the Alvinocarididae and related families suggest that lecithotrophy/planktotrophy and extended/abbreviated development have evolved independently along related families in all potential combinations. However, the Alvinocarididae is the only taxa with a combination of lecithotrophy and extended larval development. PMID:26710075

Faunal Biogeography Community Structure and Genetic Connectivity of North Atlantic Seamounts

DTIC Science & Technology

2008-09-01

found the soft sediment infauna dominated by polychaetes, peracarid crustaceans, aplacophoran, bivalve and gastropod molluscs, sipunculans, nemerteans...seamount found that there was a higher proportion of species with short or no larval duration suggesting adaptation for local retention of larvae...Munida zebra, the two chirostylid crab Eumunida species and one plaktotrophic gastropod Sassia remensa, but significant structure for the non

Lower New England, USA

NASA Technical Reports Server (NTRS)

1973-01-01

This view of lower New England, (41.5N, 72.0W) shows a rare cloud-free area stretching from northern Long Island across the states of Connecticut, Rhode Island and Massachusetts. The total area covered by this photo is more than 25,000 square miles and includes all of Rhode Island, most of Massachusetts and Connecticut, part of New York and the coastal waters of the Atlantic Ocean. Cape Cod, Boston and the offshore islands are distinctive features.

Spatial variations in mortality in pelagic early life stages of a marine fish (Gadus morhua)

NASA Astrophysics Data System (ADS)

Langangen, Øystein; Stige, Leif C.; Yaragina, Natalia A.; Ottersen, Geir; Vikebø, Frode B.; Stenseth, Nils Chr.

2014-09-01

Mortality of pelagic eggs and larvae of marine fish is often assumed to be constant both in space and time due to lacking information. This may, however, be a gross oversimplification, as early life stages are likely to experience large variations in mortality both in time and space. In this paper we develop a method for estimating the spatial variability in mortality of eggs and larvae. The method relies on survey data and physical-biological particle-drift models to predict the drift of ichthyoplankton. Furthermore, the method was used to estimate the spatially resolved mortality field in the egg and larval stages of Barents Sea cod (Gadus morhua). We analyzed data from the Barents Sea for the period between 1959 and 1993 when there are two surveys available: a spring and a summer survey. An individual-based physical-biological particle-drift model, tailored to the egg and larval stages of Barents Sea cod, was used to predict the drift trajectories from the observed stage-specific distributions in spring to the time of observation in the summer, a drift time of approximately 45 days. We interpreted the spatial patterns in the differences between the predicted and observed abundance distributions in summer as reflecting the spatial patterns in mortality over the drift period. Using the estimated mortality fields, we show that the spatial variations in mortality might have a significant impact on survival to later life stages and we suggest that there may be trade-offs between increased early survival in off shore regions and reduced probability of ending up in the favorable nursing grounds in the Barents Sea. In addition, we show that accounting for the estimated mortality field, improves the correlation between a simulated recruitment index and observation-based indices of juvenile abundance.

Climate induced temperature effects on growth performance, fecundity and recruitment in marine fish: developing a hypothesis for cause and effect relationships in Atlantic cod ( Gadus morhua) and common eelpout ( Zoarces viviparus)

NASA Astrophysics Data System (ADS)

Pörtner, H. O.; Berdal, B.; Blust, R.; Brix, O.; Colosimo, A.; De Wachter, B.; Giuliani, A.; Johansen, T.; Fischer, T.; Knust, R.; Lannig, G.; Naevdal, G.; Nedenes, A.; Nyhammer, G.; Sartoris, F. J.; Serendero, I.; Sirabella, P.; Thorkildsen, S.; Zakhartsev, M.

2001-12-01

Effects of global warming on animal distribution and performance become visible in many marine ecosystems. The present study was designed to develop a concept for a cause and effect understanding with respect to temperature changes and to explain ecological findings based on physiological processes. The concept is based on a wide comparison of invertebrate and fish species with a special focus on recent data obtained in two model species of fish. These fish species are both characterized by northern and southern distribution limits in the North Atlantic: eelpout ( Zoarces viviparus), as a typical non-migrating inhabitant of the coastal zone and the cod ( Gadus morhua), as a typical inhabitant of the continental shelf with a high importance for fisheries. Mathematical modelling demonstrates a clear significant correlation between climate induced temperature fluctuations and the recruitment of cod stocks. Growth performance in cod is optimal at temperatures close to 10°C, regardless of the population investigated in a latitudinal cline. However, temperature specific growth rates decrease at higher latitudes. Also, fecundity is less in White Sea than in North and Baltic Sea cod or eelpout populations. These findings suggest that a cold-induced shift in energy budget occurs which is unfavorable for growth performance and fecundity. Thermal tolerance limits shift depending on latitude and are characterized by oxygen limitation at both low or high temperatures. Oxygen supply to tissues is optimized at low temperature by a shift in hemoglobin isoforms and oxygen binding properties to lower affinities and higher unloading potential. Protective stimulation of heat shock protein synthesis was not observed. According to a recent model of thermal tolerance the downward shift of tolerance limits during cold adaptation is associated with rising mitochondrial densities and, thus, aerobic capacity and performance in the cold, especially in eurythermal species. At the same time the costs of mitochondrial maintenance reflected by mitochondrial proton leakage should rise leaving a lower energy fraction for growth and reproduction. The preliminary conclusion can be drawn that warming will cause a northern shift of distribution limits for both species with a rise in growth performance and fecundity larger than expected from the Q 10 effect in the north and lower growth or even extinction of the species in the south. Such a shift may heavily affect fishing activities in the North Sea.

Marine biodiversity, ecosystem functioning, and carbon cycles.

PubMed

Beaugrand, Grégory; Edwards, Martin; Legendre, Louis

2010-06-01

Although recent studies suggest that climate change may substantially accelerate the rate of species loss in the biosphere, only a few studies have focused on the potential consequences of a spatial reorganization of biodiversity with global warming. Here, we show a pronounced latitudinal increase in phytoplanktonic and zooplanktonic biodiversity in the extratropical North Atlantic Ocean in recent decades. We also show that this rise in biodiversity paralleled a decrease in the mean size of zooplanktonic copepods and that the reorganization of the planktonic ecosystem toward dominance by smaller organisms may influence the networks in which carbon flows, with negative effects on the downward biological carbon pump and demersal Atlantic cod (Gadus morhua). Our study suggests that, contrary to the usual interpretation of increasing biodiversity being a positive emergent property promoting the stability/resilience of ecosystems, the parallel decrease in sizes of planktonic organisms could be viewed in the North Atlantic as reducing some of the services provided by marine ecosystems to humans.

Large scale, synchronous variability of marine fish populations driven by commercial exploitation.

PubMed

Frank, Kenneth T; Petrie, Brian; Leggett, William C; Boyce, Daniel G

2016-07-19

Synchronous variations in the abundance of geographically distinct marine fish populations are known to occur across spatial scales on the order of 1,000 km and greater. The prevailing assumption is that this large-scale coherent variability is a response to coupled atmosphere-ocean dynamics, commonly represented by climate indexes, such as the Atlantic Multidecadal Oscillation and North Atlantic Oscillation. On the other hand, it has been suggested that exploitation might contribute to this coherent variability. This possibility has been generally ignored or dismissed on the grounds that exploitation is unlikely to operate synchronously at such large spatial scales. Our analysis of adult fishing mortality and spawning stock biomass of 22 North Atlantic cod (Gadus morhua) stocks revealed that both the temporal and spatial scales in fishing mortality and spawning stock biomass were equivalent to those of the climate drivers. From these results, we conclude that greater consideration must be given to the potential of exploitation as a driving force behind broad, coherent variability of heavily exploited fish species.

Recruitment success of different fish stocks in the North Sea in relation to climate variability

NASA Astrophysics Data System (ADS)

Dippner, Joachim W.

1997-09-01

Long-term data of year class strengths of different commercially harvested fish stocks based on a virtual population analysis (VPA) are available from ICES. The anomalies of these long-term data sets of year class strength are analyzed using Empirical Orthogonal Functions (EOFs) and are related to climate variability: the anomalies of the sea surface temperature (SST) in the northern North Sea and the North Atlantic Oscillation (NAO) index. A Canonical Correlation Analysis (CCA) between the leading eigenmodes is performed. The results suggest that the variability in the fish recruitment of western mackerel and three gadoids, namely North Sea cod, North Sea saithe, and North Sea whiting is highly correlated to the variability of the North Sea SST which is directly influenced by the NAO. For North Sea haddock and herring no meaningful correlation exists to North Sea SST and NAO. The results allow the conclusion that is seems possible to predict long-term changes in the fish recruitment from climate change scenarios for North Sea cod, North Sea saithe and western mackerel. Furthermore, the results indicate the possibility of recruitment failure for North Sea cod, North Sea whiting, and western mackerel in the case of global warming.

A molecular method for the detection of sally lightfoot crab larvae (Grapsus grapsus, Brachyura, Grapsidae) in plankton samples

PubMed Central

Ströher, Patrícia R.; Firkowski, Carina R.; Freire, Andrea S.; Pie, Marcio R.

2011-01-01

The decapod Grapsus grapsus is commonly found on oceanic islands of the Pacific and Atlantic coasts of the Americas. In this study, a simple, quick and reliable method for detecting its larvae in plankton samples is described, which makes it ideal for large-scale studies of larval dispersal patterns in the species. PMID:21931530

Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (South Atlantic): Bluefish

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oliver, J.D.; Van Den Avyle, M.J.; Bozeman, E.L. Jr.

1989-04-01

Species profiles are literature summaries of the life history, distribution, and environmental requirements of coastal fishes and invertebrates. Profiles are prepared to assist with environmental impact assessment. The bluefish (Pomatomus saltatrix) is a valuable recreational and commercial fish on the Atlantic coast. In the South Atlantic Region the recreational catch exceeds the commercial catch. The bluefish is a migratory pelagic fish that generally travels northward in spring and summer and southward in fall and winter along the Atlantic seaboard. In the South Atlantic Region, spawning occurs primarily during spring waters just shoreward of the Gulf Stream form southern North Carolinamore » to Florida. Most larvae are carried northward by the Gulf Stream and are dispersed over the continental slope of the Middle Atlantic Region. Adult bluefish inhabit nearshore areas in the South Atlantic Region during their southerly migration in fall and winter. Larval bluefish eat mostly copepods, cladocerans, and invertebrate eggs; juveniles eat larger invertebrates and fishes. Adult bluefish eat fishes and seem to prefer schooling coastal species. Bluefish have been reported to avoid areas of low dissolved oxygen. Water turbidity may affect feeding because bluefish rely on vision to locate prey. Environmental disturbances which affect the dissolved oxygen concentration or turbidity of estuarine and nearshore waters may, therefore, affect bluefish distribution and feeding. 40 refs., 4 figs., 2 tabs.« less

Evaluating the impact of aerosol particles above cloud on cloud optical depth retrievals from MODIS

NASA Astrophysics Data System (ADS)

Alfaro-Contreras, Ricardo; Zhang, Jianglong; Campbell, James R.; Holz, Robert E.; Reid, Jeffrey S.

2014-05-01

Using two different operational Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical depth (COD) retrievals (0.86 versus 1.6 µm), we evaluate the impact of above-cloud smoke aerosol particles on near-IR (0.86 µm) COD retrievals. Aerosol Index (AI) from the collocated Ozone Monitoring Instrument (OMI) are used to identify above-cloud aerosol particle loading over the southern Atlantic Ocean, including both smoke and dust from the African subcontinent. Collocated Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation data constrain cloud phase and provide contextual above-cloud aerosol optical depth. The frequency of occurrence of above-cloud aerosol events is depicted on a global scale for the spring and summer seasons from OMI and Cloud Aerosol Lidar with Orthogonal Polarization. Seasonal frequencies for smoke-over-cloud off the southwestern Africa coastline reach 20-50% in boreal summer. We find a corresponding low COD bias of 10-20% for standard MODIS COD retrievals when averaged OMI AI are larger than 1. No such bias is found over the Saharan dust outflow region off northern Africa, since both MODIS 0.86 and 1.6 µm channels are vulnerable to radiance attenuation due to dust particles. A similar result is found for a smaller domain, in the Gulf of Tonkin region, from smoke advection over marine stratocumulus clouds and outflow into the northern South China Sea in spring. This study shows the necessity of accounting for the above-cloud aerosol events for future studies using standard MODIS cloud products in biomass burning outflow regions, through the use of collocated OMI AI and supplementary MODIS 1.6 µm COD products.

Increased natural mortality at low abundance can generate an Allee effect in a marine fish.

PubMed

Kuparinen, Anna; Hutchings, Jeffrey A

2014-10-01

Negative density-dependent regulation of population dynamics promotes population growth at low abundance and is therefore vital for recovery following depletion. Inversely, any process that reduces the compensatory density-dependence of population growth can negatively affect recovery. Here, we show that increased adult mortality at low abundance can reverse compensatory population dynamics into its opposite-a demographic Allee effect. Northwest Atlantic cod (Gadus morhua) stocks collapsed dramatically in the early 1990s and have since shown little sign of recovery. Many experienced dramatic increases in natural mortality, ostensibly attributable in some populations to increased predation by seals. Our findings show that increased natural mortality of a magnitude observed for overfished cod stocks has been more than sufficient to fundamentally alter the dynamics of density-dependent population regulation. The demographic Allee effect generated by these changes can slow down or even impede the recovery of depleted populations even in the absence of fishing.

Variation and temporal patterns in the composition of the surface ichthyoplankton in the southern Bay of Biscay (W. Atlantic)

NASA Astrophysics Data System (ADS)

d'Elbée, Jean; Castège, Iker; Hémery, Georges; Lalanne, Yann; Mouchès, Claude; Pautrizel, Françoise; D'Amico, Frank

2009-05-01

From September 2000 to December 2006, surface plankton samples were collected on a monthly basis, from a station located in the southern Bay of Biscay (43°37N; 1°43W France), near the deep Capbreton canyon. In this paper, the results for the ichthyoplankton assemblage are presented. Among the 62 taxa recorded, only 35 were present in the larval stage whilst only 10 were represented by their eggs. Taxa represented by both stages (eggs+larvae; N=17) had the highest abundance. The presence in the surface plankton assemblage of species, at either or both stage, is interpreted within the context of the bathymetric distribution of species. The maxima in abundance and diversity occurred in February-March, for eggs, and May-June, for larvae. This 3-month time-lag between the stages is proposed to be related to the timing of egg spawning and larval recruitment to the pelagic environment. Mean egg abundances (82.4±29.8 eggs/10 m 2) were 10-fold higher than the larval abundances (7.1±1.8 larvae/10 m 2). Despite pronounced monthly variability, no statistically significant decrease in either egg or larvae abundance was observed during this 6-year study period. Compared with previous published studies, this study shows that the peak in ichthyoplankton diversity occurred two months earlier. In addition, the spawning period occurred over the whole year, even during autumn and winter. Using ordination techniques, the annual sequence appearance of taxa are described at the study site: Gadiforms, Ammodytidae and Pleuronectiforms were present during the winter whilst Sparidae, Blennidae, Labridae and Gobiidae, formed the summer group. Only three species, European anchovy Engraulis encrasicolus, European pilchard Sardina pilchardus and Atlantic horse mackerel Trachurus trachurus were recorded throughout the year.

Patterns in larval fish assemblages under the influence of the Brazil current

NASA Astrophysics Data System (ADS)

Katsuragawa, M.; Dias, J. F.; Harari, J.; Namiki, C.; Zani-Teixeira, M. L.

2014-10-01

The present work investigates the composition of larval fish assemblages in the area under the influence of the Brazil Current (BC) off the Southeastern Brazilian Bight. Ichthyoplankton was sampled during two oceanographic cruises (November-December/1997 - spring; May/2001 - autumn) with bongo nets oblique tows. Seasonal variation and a coastal-ocean pattern in the distribution of larval fish was observed and was influenced by the dynamics of the water masses, Coastal Water (CW), Tropical Water (TW) and South Atlantic Central Water (SACW), the last two of which were transported by the BC. During spring, the shelf assemblage was dominated by larvae of small pelagic fishes, such as Sardinella brasiliensis, Engraulis anchoita and Trachurus lathami, and was associated with the enrichment of shallow water by the SACW upwelling. In autumn, the abundance of coastal species larvae was reduced, and the shelf assemblage was dominated by Bregmaceros cantori. A transitional assemblage occurred during the spring, and comprised mesopelagic and coastal species. In both seasons, the oceanic assemblage was dominated by the mesopelagic families, Myctophidae, Sternopthychidae and Phosichthyidae. The oceanographic conditions also demonstrated clear differences between the northern and southern subareas, particularly in the shelf zone. This was especially the case during autumn when a latitudinal gradient in larval fish assemblages became more pronounced.

Transcriptional responses in juvenile Atlantic cod (Gadus morhua) after exposure to mercury-contaminated sediments obtained near the wreck of the German WW2 submarine U-864, and from Bergen Harbor, Western Norway.

PubMed

Olsvik, Pål A; Brattås, Marianne; Lie, Kai K; Goksøyr, Anders

2011-04-01

The main aim of the present work was to investigate the effects of mercury (Hg)-enriched sediments on fish. Sediments near the sunken German WW2 submarine U-864, which according to historical documents included 67 tons of metallic Hg in its cargo, are enriched of Hg leaking from the wreckage. Juvenile Atlantic cod (Gadus morhua) were exposed to two field-collected polluted sediments (U-864: inorganic Hg and Bergen Harbor (Vågen): inorganic Hg, PCB and PAH) or two comparable reference sediments for 5 weeks in the laboratory, and transcriptional responses evaluated in gills and liver. Gills of fish exposed to the Hg-enriched sunken WW2 submarine U-864 sediment contained four fold higher Hg levels compared to the control fish. An increase in Hg content in liver in the U-864 fish was also observed. The transcriptional results showed that calreticulin, HSP70 and heme oxygenase mRNA were significantly up-regulated in gills in fish exposed to the Hg-enriched sediments, whereas calreticulin, heme oxygenase, transferrin and WAP65 were significantly up-regulated and glutathione peroxidase 4B and zona pellucida 3 were significantly down-regulated in liver tissue. In gills and liver of cod exposed to the mixed-contaminated Vågen sediment, CYP1A showed the highest induction. In conclusion, the experiment shows that sediment-bound Hg is available to the fish and affects the transcription of oxidative stress responsive enzymes, suggesting that the Hg-enriched sediments may negatively affect the local wildlife. Furthermore, the mixed contaminated sediments of Vågen affected similar responses in addition to Ah-receptor mediated responses reflecting exposure to PAHs and PCBs. Copyright © 2010 Elsevier Ltd. All rights reserved.

Adjustments of molecular key components of branchial ion and pH regulation in Atlantic cod (Gadus morhua) in response to ocean acidification and warming.

PubMed

Michael, Katharina; Kreiss, Cornelia M; Hu, Marian Y; Koschnick, Nils; Bickmeyer, Ulf; Dupont, Sam; Pörtner, Hans-O; Lucassen, Magnus

2016-03-01

Marine teleost fish sustain compensation of extracellular pH after exposure to hypercapnia by means of efficient ion and acid-base regulation. Elevated rates of ion and acid-base regulation under hypercapnia may be stimulated further by elevated temperature. Here, we characterized the regulation of transepithelial ion transporters (NKCC1, NBC1, SLC26A6, NHE1 and 2) and ATPases (Na(+)/K(+) ATPase and V-type H(+) ATPase) in gills of Atlantic cod (Gadus morhua) after 4 weeks of exposure to ambient and future PCO2 levels (550 μatm, 1200 μatm, 2200 μatm) at optimum (10 °C) and summer maximum temperature (18 °C), respectively. Gene expression of most branchial ion transporters revealed temperature- and dose-dependent responses to elevated PCO2. Transcriptional regulation resulted in stable protein expression at 10 °C, whereas expression of most transport proteins increased at medium PCO2 and 18 °C. mRNA and protein expression of distinct ion transport proteins were closely co-regulated, substantiating cellular functional relationships. Na(+)/K(+) ATPase capacities were PCO2 independent, but increased with acclimation temperature, whereas H(+) ATPase capacities were thermally compensated but decreased at medium PCO2 and 10 °C. When functional capacities of branchial ATPases were compared with mitochondrial F1Fo ATP-synthase strong correlations of F1Fo ATP-synthase and ATPase capacities generally indicate close coordination of branchial aerobic ATP demand and supply. Our data indicate physiological plasticity in the gills of cod to adjust to a warming, acidifying ocean within limits. In light of the interacting and non-linear, dose-dependent effects of both climate factors the role of these mechanisms in shaping resilience under climate change remains to be explored. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Influences of large- and regional-scale climate on fish recruitment in the Skagerrak-Kattegat over the last century

NASA Astrophysics Data System (ADS)

Linderholm, Hans W.; Cardinale, Massimiliano; Bartolino, Valerio; Chen, Deliang; Ou, Tinghai; Svedäng, Henrik

2014-06-01

Dynamics of commercial fish stocks are generally associated with fishing pressure and climate variability. Due to short time series, past studies of the relationships between fish stock dynamics and climate have mainly been restricted to the last few decades. Here we analyzed a century-long time series of plaice, cod and haddock from the Skagerrak-Kattegat, to assess the long-term influence of climate on recruitment. Recruitment success (RS) was compared against sea-surface temperature (SST) and atmospheric circulation indices on large (North Atlantic) and regional (Skagerrak-Kattegat) scales. Our results show that the influence of climate on RS was more pronounced on longer, than on shorter timescales. Over the century-long period, a shift from low to high climate sensitivity was seen from the early to the late part for plaice and cod, while the opposite was found for haddock. This shift suggests that the increasing fishing pressure and the climate change in the Skagerrak-Kattegat have resulted in an increased sensitivity of RS to climate for plaice and cod. The diminishing of climate sensitivity in haddock RS, on the other hand, may be linked to the early twentieth century collapse of the stock in the region. While no long-term relationship between RS and the Atlantic Multidecadal Oscillation (AMO) could be found, large RS fluctuations during the positive phase of the AMO (1935-1960), relative to the cold phases, suggests a changed pattern in recruitment during warm periods. On the other hand, this could be due to the increased fishing pressure in the area. Thus, reported correlations between climate and fish may be caused by strong trends in climate in the late-twentieth century, and coincident reduction in fish stocks caused by intense fishing, rather than a stable relationship between climate and fish recruitment per se.

Are Atlantic cod in Store Lungegårdsvann, a seawater recipient in Bergen, affected by environmental contaminants? A qRT-PCR survey.

PubMed

Olsvik, Pål A; Lie, Kai K; Goksøyr, Anders; Midtun, Torbjørn; Frantzen, Sylvia; Maage, Amund

2009-01-01

The aim of this study was to examine the transcriptional levels of selected genes in liver and head kidney of Atlantic cod Gadus morhua sampled in Store Lungegårdsvann, a seawater recipient situated in the middle of the city of Bergen, Norway, for effects of contaminants released from municipal sewage effluents and former dump sites. Five males and six females were caught with fish traps in Store Lungegårdsvann in 2006. Cod from a location near Jondal in the Hardanger Fjord were used as controls (five males and four females). The following 12 genes were picked as potential markers of contaminant exposure: cytochrome P-450 1A (CYP1A), cytochrome P-450 2C33-like (CYP2C33-like), cytochrome P-450 3C (CYP3C), glutathione S-transcriptase pi (GST) (detoxification and biotransformation), Mn superoxide dismutase (Mn SOD), glutathione reductase (GR), heat-shock protein 70 (HSP70) (oxidative stress), vitellogenin A (VtgA), vitellogenin B (VtgB), zona pellucida 2 (ZP2) (effects of estrogen disruptors), B-cell lymphoma 2 (Bcl-2), and cyclin-dependent kinase inhibitor 1A (CDKN1A) (radiation). The results showed that two males caught in Store Lungegårdsvann possessed high transcriptional levels of VtgA, VtgB, and ZP2 mRNA in the liver. In addition, CYP1A was 4.9-fold higher expressed in males from Store Lungegårdsvann compared to males from the reference population. CYP2C33-like mRNA expression was significantly higher (1.8-fold) in females from Store Lungegårdsvann than in females from the reference population. CYP1A was significantly lower (4.7-fold) expressed in head kidney of females from Store Lungegårdsvann than in females from Hardanger Fjord. In a follow-up examination with sexually mature cod sampled in Store Lungegårdsvann in 2007, the livers were shown to contain high levels of polychlorinated biphenyls (PCB) and dioxin-like PCB. In conclusion, fish inhabiting Store Lungegårdsvann are exposed not only to endocrine disruptors but also to other contaminants that affect the transcription of phase I biotransformation genes.

Effect of a fish stock's demographic structure on offspring survival and sensitivity to climate.

PubMed

Stige, Leif Christian; Yaragina, Natalia A; Langangen, Øystein; Bogstad, Bjarte; Stenseth, Nils Chr; Ottersen, Geir

2017-02-07

Commercial fishing generally removes large and old individuals from fish stocks, reducing mean age and age diversity among spawners. It is feared that these demographic changes lead to lower and more variable recruitment to the stocks. A key proposed pathway is that juvenation and reduced size distribution causes reduced ranges in spawning period, spawning location, and egg buoyancy; this is proposed to lead to reduced spatial distribution of fish eggs and larvae, more homogeneous ambient environmental conditions within each year-class, and reduced buffering against negative environmental influences. However, few, if any, studies have confirmed a causal link from spawning stock demographic structure through egg and larval distribution to year class strength at recruitment. We here show that high mean age and size in the spawning stock of Barents Sea cod (Gadus morhua) is positively associated with high abundance and wide spatiotemporal distribution of cod eggs. We find, however, no support for the hypothesis that a wide egg distribution leads to higher recruitment or a weaker recruitment-temperature correlation. These results are based on statistical analyses of a spatially resolved data set on cod eggs covering a period (1959-1993) with large changes in biomass and demographic structure of spawners. The analyses also account for significant effects of spawning stock biomass and a liver condition index on egg abundance and distribution. Our results suggest that the buffering effect of a geographically wide distribution of eggs and larvae on fish recruitment may be insignificant compared with other impacts.

Early life history pelagic exposure profiles of selected commercially important fish species in the Gulf of Alaska

NASA Astrophysics Data System (ADS)

Doyle, Miriam J.; Mier, Kathryn L.

2016-10-01

A synthesis of nearly four decades of ichthyoplankton survey data from the Gulf of Alaska was undertaken to provide the most comprehensive information available on the early life history ecology of five focal species: Pacific Cod (Gadus macrocephalus), Walleye Pollock (Gadus chalcogrammus), Pacific Ocean Perch (Sebastes alutus), Sablefish (Anoplopoma fimbria), and Arrowtooth Flounder (Atheresthes stomias). This analysis of historical data, along with information from published studies, is presented here in the form of ecological reviews of the species during their planktonic phase. The reviews include descriptions of temporal and spatial patterns of exposure to the environment, and interpretation regarding associated sensitivities to environmental forcing. On a temporal scale, patterns in abundance of eggs and larvae are synthesized that characterize seasonal exposure to the pelagic environment, and interannual variation that is presumed to incorporate responses to long-term environmental forcing. Spatial patterns are synthesized to identify horizontal and vertical extent of egg and larval distributions, delineate areas of primary larval habitat, and illuminate egg and larval drift pathways. The observed patterns are discussed with respect to characterizing species early life history strategies, identifying long-term adaptations to the Gulf of Alaska environment, and associated resilience and vulnerability factors that may modulate early life responses to environmental forcing in this region. For each species, gaps in knowledge are identified and are concerned primarily with the period of transition between the larval and juvenile stage, and feeding habits and ecology across seasons, habitats and sub-intervals of early ontogeny. These early life history reviews advance our ecological understanding of the pelagic phase, and fine-tune our focus for the investigation of potential response mechanisms to environmental forcing at appropriate, species-specific temporal and spatial scales.

Sequential protein extraction as an efficient method for improved proteome coverage in larvae of Atlantic salmon (Salmo salar).

PubMed

Nuez-Ortín, Waldo G; Carter, Chris G; Nichols, Peter D; Wilson, Richard

2016-07-01

Understanding diet- and environmentally induced physiological changes in fish larvae is a major goal for the aquaculture industry. Proteomic analysis of whole fish larvae comprising multiple tissues offers considerable potential but is challenging due to the very large dynamic range of protein abundance. To extend the coverage of the larval phase of the Atlantic salmon (Salmo salar) proteome, we applied a two-step sequential extraction (SE) method, based on differential protein solubility, using a nondenaturing buffer containing 150 mM NaCl followed by a denaturing buffer containing 7 M urea and 2 M thiourea. Extracts prepared using SE and one-step direct extraction were characterized via label-free shotgun proteomics using nanoLC-MS/MS (LTQ-Orbitrap). SE partitioned the proteins into two fractions of approximately equal amounts, but with very distinct protein composition, leading to identification of ∼40% more proteins than direct extraction. This fractionation strategy enabled the most detailed characterization of the salmon larval proteome to date and provides a platform for greater understanding of physiological changes in whole fish larvae. The MS data are available via the ProteomeXchange Consortium PRIDE partner repository, dataset PXD003366. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Dispersal Routes and Habitat Utilization of Juvenile Atlantic Bluefin Tuna, Thunnus thynnus, Tracked with Mini PSAT and Archival Tags

PubMed Central

Galuardi, Benjamin; Lutcavage, Molly

2012-01-01

Between 2005 and 2009, we deployed 58 miniature pop-up satellite archival tags (PSAT) and 132 implanted archival tags on juvenile Atlantic bluefin tuna (age 2–5) in the northwest Atlantic Ocean. Data returned from these efforts (n = 26 PSATs, 1 archival tag) revealed their dispersal routes, horizontal and vertical movements and habitat utilization. All of the tagged bluefin tuna remained in the northwest Atlantic for the duration observed, and in summer months exhibited core-use of coastal seas extending from Maryland to Cape Cod, MA, (USA) out to the shelf break. Their winter distributions were more spatially disaggregated, ranging south to the South Atlantic Bight, northern Bahamas and Gulf Stream. Vertical habitat patterns showed that juvenile bluefin tuna mainly occupied shallow depths (mean  = 5–12 m, sd  = 15–23.7 m) and relatively warm water masses in summer (mean  = 17.9–20.9°C, sd  = 4.2–2.6°C) and had deeper and more variable depth patterns in winter (mean  = 41–58 m, sd  = 48.9–62.2 m). Our tagging results reveal annual dispersal patterns, behavior and oceanographic associations of juvenile Atlantic bluefin tuna that were only surmised in earlier studies. Fishery independent profiling from electronic tagging also provide spatially and temporally explicit information for evaluating dispersals rates, population structure and fisheries catch patterns. PMID:22629461

Growth performance and survival of larval Atlantic herring, under the combined effects of elevated temperatures and CO2

PubMed Central

Stiasny, Martina H.; Jutfelt, Fredrik; Riebesell, Ulf; Clemmesen, Catriona

2018-01-01

In the coming decades, environmental change like warming and acidification will affect life in the ocean. While data on single stressor effects on fish are accumulating rapidly, we still know relatively little about interactive effects of multiple drivers. Of particular concern in this context are the early life stages of fish, for which direct effects of increased CO2 on growth and development have been observed. Whether these effects are further modified by elevated temperature was investigated here for the larvae of Atlantic herring (Clupea harengus), a commercially important fish species. Over a period of 32 days, larval survival, growth in size and weight, and instantaneous growth rate were assessed in a crossed experimental design of two temperatures (10°C and 12°C) with two CO2 levels (400 μatm and 900 μatm CO2) at food levels mimicking natural levels using natural prey. Elevated temperature alone led to increased swimming activity, as well as decreased survival and instantaneous growth rate (Gi). The comparatively high sensitivity to elevated temperature in this study may have been influenced by low food levels offered to the larvae. Larval size, Gi and swimming activity were not affected by CO2, indicating tolerance of this species to projected "end of the century" CO2 levels. A synergistic effect of elevated temperature and CO2 was found for larval weight, where no effect of elevated CO2 concentrations was detected in the 12°C treatment, but a negative CO2 effect was found in the 10°C treatment. Contrasting CO2 effects were found for survival between the two temperatures. Under ambient CO2 conditions survival was increased at 12°C compared to 10°C. In general, CO2 effects were minor and considered negligible compared to the effect of temperature under these mimicked natural food conditions. These findings emphasize the need to include biotic factors such as energy supply via prey availability in future studies on interactive effects of multiple stressors. PMID:29370273

Not so sluggish: the success of the Felimare picta complex (Gastropoda, Nudibranchia) crossing Atlantic biogeographic barriers

PubMed Central

Levy, André

2016-01-01

The molecular phylogeny of the Atlanto-Mediterranean species of the genus Felimare, particularly those attributed to the species F. picta, was inferred using two mitochondrial markers (16S and COI). A recent revision of the Chromodorididae clarified the taxonomic relationships at the family level redefining the genus Felimare. However, conflicting taxonomic classifications have been proposed for a restrict group of taxa with overlapping morphological characteristics and geographical distributions designated here as the Felimare picta complex. Three major groups were identified: one Mediterranean and amphi-Atlantic group; a western Atlantic group and a tropical eastern Atlantic group. F. picta forms a paraphyletic group since some subspecies are more closely related with taxa traditionaly classified as independent species (e.g. F. zebra) than with other subspecies with allopatric distributions (e.g. F. picta picta and F. picta tema). Usually, nudibranchs have adhesive demersal eggs, short planktonic larval phases and low mobility as adults unless rafting on floating materials occurs. Surprisingly however, the phylogeny of the F. picta complex suggests that they successfully cross main Atlantic biogeographic barriers including the mid-Atlantic barrier. This ability to cross different biogeographic barriers may be related to F. picta’s distinct life history and ecological traits. Compared to other Chromodorididae F. picta has larger eggs and planktotrophic larvae which could be related to a longer planktonic phase. PMID:26823995

Larval connectivity studies in the Western Iberian Peninsula

NASA Astrophysics Data System (ADS)

Dubert, Jesus; Nolasco, Rita; Queiroga, Henrique

2010-05-01

The study of the connectivity between populations is one of the 'hot' applications of numerical models of the ocean circulation. An IBM (Individual Based model) was developed, using Carcinus manenas larvae crab as a model. A set of particles was used as a representation of larvae, in order to study their larval life cycle, including the larval growth, larval mortality (both depending on temperature and salinity), larval dispersal by currents, diel vertical migration, and larval recruitment. The life cycle of every larvae in the ocean, was modeled from zoeae 1 stage to megalopae stage, during typical periods of 30-50 days. Larvae were initialized in 14 estuarine systems of the Atlantic Western Iberian Peninsula, from January to July. In every period, a number of 225 larvae are initialized in everyone of the 14 considered estuaries, with fortynighly periodicity. The larvae evolves during the (variable, depending mainly on temperature) period of growth in the ocean, and when a larvae reach the age for recruit, if it is located in the neighborhood of the considered estuarine systems, the larvae is accounted as a recruited larvae in that place. With this methodology, a connectivity matrix can be computed, acconting for the 225 larvae emitted in every estuary, the number of larvae that reaches the every place. The connectivity matrix depends strongly on the current regime along the Atlantic coast of Iberian Peninsula, and has been calculated for the present circulation, for the period 2001 to 2009, for runs with realistic forcing with NCEP2 and Quikscat (for winds) forcing. The connectivity matrix, have also been calculated for climatological runs. For the present climatological conditions, it is observed the prevalence of southward transport for the period January-July, because the prevalence of Northerly winds along the west coast of IP in the COADS present time climatology. Strong dispersal is observed at the Northern estuaries, during winter with strong loss of larvae. The most important exchange from January to April exists between estuaries 4 and 5 (Muros and Vigo, Galicia, Spain) with the region of central Porgugal (Figueira da Foz). During summer, due to the prevalence of strong Northerly winds the mortality for dispersion of the larvae increases, which is reflected by the low values of connectivity observed in the climatological runs. For the case of realistic circulation for the period 2001 to 2009, the connectivity matrix is strongly linked to the ocean coastal circulation, characterized by predominant poleward/equatorward flow with frequent inversions of the flow, with strong interannual variability, which are accounted in the model configurations. The patters of connectivity respond to the atmospheric variability, and the connectivity is strongly variable. The variability in the connectivity, in terms of mean and its anomalies, will be discussed .

Orchestrating change: The thyroid hormones and GI-tract development in flatfish metamorphosis.

PubMed

Gomes, A S; Alves, R N; Rønnestad, I; Power, D M

2015-09-01

Metamorphosis in flatfish (Pleuronectiformes) is a late post-embryonic developmental event that prepares the organism for the larval-to-juvenile transition. Thyroid hormones (THs) play a central role in flatfish metamorphosis and the basic elements that constitute the thyroid axis in vertebrates are all present at this stage. The advantage of using flatfish to study the larval-to-juvenile transition is the profound change in external morphology that accompanies metamorphosis making it easy to track progression to climax. This important lifecycle transition is underpinned by molecular, cellular, structural and functional modifications of organs and tissues that prepare larvae for a successful transition to the adult habitat and lifestyle. Understanding the role of THs in the maturation of organs and tissues with diverse functions during metamorphosis is a major challenge. The change in diet that accompanies the transition from a pelagic larvae to a benthic juvenile in flatfish is associated with structural and functional modifications in the gastrointestinal tract (GI-tract). The present review will focus on the maturation of the GI-tract during metamorphosis giving particular attention to organogenesis of the stomach a TH triggered event. Gene transcripts and biological processes that are associated with GI-tract maturation during Atlantic halibut metamorphosis are identified. Gene ontology analysis reveals core biological functions and putative TH-responsive genes that underpin TH-driven metamorphosis of the GI-tract in Atlantic halibut. Deciphering the specific role remains a challenge. Recent advances in characterizing the molecular, structural and functional modifications that accompany the appearance of a functional stomach in Atlantic halibut are considered and future research challenges identified. Copyright © 2014 Elsevier Inc. All rights reserved.

Effect of small-scale turbulence on feeding rates of larval cod and haddock in stratified water on Georges Bank

NASA Astrophysics Data System (ADS)

Gregory Lough, R.; Mountain, David G.

A set of vertically stratified MOCNESS tows made on the southern flank of Georges Bank in spring 1981 and 1983 was analyzed to examine the relationship between larval cod and haddock feeding success and turbulent dissipation in a stratified water column. Observed feeding ratios (mean no. prey larval gut -1) for three size classes of larvae were compared with estimated ingestion rates using the Rothschild and Osborn ( Journal of Plankton Research, 10, 1988, 465-474) predator-prey encounter rate model. Simulation of contact rates requires parameter estimates of larval fish and their prey cruising speeds, density of prey, and turbulent velocity of the water column. Turbulent dissipation was estimated from a formulation by James ( Estuarine and Coastal Marine Science, 5, 1977, 339-353) incorporating both a wind a tidal component. Larval ingestion rates were based on swallowing probabilities derived from calm-water laboratory observations. Model-predicted turbulence profiles generally showed that dissipation rates were low to moderate (10 -11-10 -7 W kg -1). Turbulence was minimal at or below the pycnocline (≈ 25 m) with higher values(1-2 orders of magnitude) near the surface due to wind mixing and at depth due to shear in the tidal current near bottom. In a stratified water column during the day, first-feeding larvae (5-6 mm) were located mostly within or above the pycnocline coincident with their copepod prey (nauplii and copepodites). The 7-8 mm larvae were most abundant within the pycnocline, whereas the 9-10 mm larvae were found within and below the pycnocline. Feeding ratios were relatively low in early morning following darkness when the wind speed was low, but increased by a factor of 2-13 by noon and evening when the wind speed doubled. Comparison of depth-specific feeding ratios with estimated ingestion rates, derived from turbulence-affected contact rates, generally were reasonable after allowing for an average gut evacuation time (4 h), and in many cases the observed and estimated values had similar profiles. However, differences in vertical profiles may be attributed to differential digestion time, pursuit behavior affected by high turbulence, vertical migration of the larger larvae, an optimum light level for feeding, smaller-scale prey patchiness, and the gross estimates of turbulence. Response-surface estimation of averaged feeding ratios as a function of averaged prey density (0-50 m) with a minimum water-column turbulence value predicted that 5-6 mm larvae have a maximum feeding response at the highest prey densities (> 30 prey 1 -1) and lower turbulence estimates (<10 -10 W kg -1). The 7-8 mm and 9-10 mm larvae also have a maximum feeding response at high prey densities and low turbulence, but it extends to lower prey densities (> 10 prey 1 -1) as turbulence increases to intermidiate levels, clearly showing an interaction effect. In general, maximum feeding ratios occur at low to intermediate levels of turbulence where average prey density is greater than 10-20 prey 1 -1.

Productivity responses of a widespread marine piscivore, Gadus morhua, to oceanic thermal extremes and trends.

PubMed

Mantzouni, Irene; MacKenzie, Brian R

2010-06-22

Climate change will have major consequences for population dynamics and life histories of marine biota as it progresses in the twenty-first century. These impacts will differ in magnitude and direction for populations within individual marine species whose geographical ranges span large gradients in latitude and temperature. Here we use meta-analytical methods to investigate how recruitment (i.e. the number of new fish produced by spawners in a given year which subsequently grow and survive to become vulnerable to fishing gear) has reacted to temperature fluctuations, and in particular to extremes of temperature, in cod populations throughout the north Atlantic. Temperature has geographically explicit effects on cod recruitment. Impacts differ depending on whether populations are located in the upper (negative effects) or in the lower (positive effects) thermal range. The probabilities of successful year-classes in populations living in warm areas is on average 34 per cent higher in cold compared with warm seasons, whereas opposite patterns exist for populations living in cold areas. These results have implications for cod dynamics, distributions and phenologies under the influence of ocean warming, particularly related to not only changes in the mean temperature, but also its variability (e.g. frequency of exceptionally cold or warm seasons).

Local overfishing may be avoided by examining parameters of a spatio-temporal model

PubMed Central

Shackell, Nancy; Mills Flemming, Joanna

2017-01-01

Spatial erosion of stock structure through local overfishing can lead to stock collapse because fish often prefer certain locations, and fisheries tend to focus on those locations. Fishery managers are challenged to maintain the integrity of the entire stock and require scientific approaches that provide them with sound advice. Here we propose a Bayesian hierarchical spatio-temporal modelling framework for fish abundance data to estimate key parameters that define spatial stock structure: persistence (similarity of spatial structure over time), connectivity (coherence of temporal pattern over space), and spatial variance (variation across the seascape). The consideration of these spatial parameters in the stock assessment process can help identify the erosion of structure and assist in preventing local overfishing. We use Atlantic cod (Gadus morhua) in eastern Canada as a case study an examine the behaviour of these parameters from the height of the fishery through its collapse. We identify clear signals in parameter behaviour under circumstances of destructive stock erosion as well as for recovery of spatial structure even when combined with a non-recovery in abundance. Further, our model reveals the spatial pattern of areas of high and low density persists over the 41 years of available data and identifies the remnant patches. Models of this sort are crucial to recovery plans if we are to identify and protect remaining sources of recolonization for Atlantic cod. Our method is immediately applicable to other exploited species. PMID:28886179

Local overfishing may be avoided by examining parameters of a spatio-temporal model.

PubMed

Carson, Stuart; Shackell, Nancy; Mills Flemming, Joanna

2017-01-01

Spatial erosion of stock structure through local overfishing can lead to stock collapse because fish often prefer certain locations, and fisheries tend to focus on those locations. Fishery managers are challenged to maintain the integrity of the entire stock and require scientific approaches that provide them with sound advice. Here we propose a Bayesian hierarchical spatio-temporal modelling framework for fish abundance data to estimate key parameters that define spatial stock structure: persistence (similarity of spatial structure over time), connectivity (coherence of temporal pattern over space), and spatial variance (variation across the seascape). The consideration of these spatial parameters in the stock assessment process can help identify the erosion of structure and assist in preventing local overfishing. We use Atlantic cod (Gadus morhua) in eastern Canada as a case study an examine the behaviour of these parameters from the height of the fishery through its collapse. We identify clear signals in parameter behaviour under circumstances of destructive stock erosion as well as for recovery of spatial structure even when combined with a non-recovery in abundance. Further, our model reveals the spatial pattern of areas of high and low density persists over the 41 years of available data and identifies the remnant patches. Models of this sort are crucial to recovery plans if we are to identify and protect remaining sources of recolonization for Atlantic cod. Our method is immediately applicable to other exploited species.

Testing spatial heterogeneity with stock assessment models

PubMed Central

Eero, Margit; Silva, Alexandra; Ulrich, Clara; Pawlowski, Lionel; Holmes, Steven J.; Ibaibarriaga, Leire; De Oliveira, José A. A.; Riveiro, Isabel; Alzorriz, Nekane; Citores, Leire; Scott, Finlay; Uriarte, Andres; Carrera, Pablo; Duhamel, Erwan; Mosqueira, Iago

2018-01-01

This paper describes a methodology that combines meta-population theory and stock assessment models to gain insights about spatial heterogeneity of the meta-population in an operational time frame. The methodology was tested with stochastic simulations for different degrees of connectivity between sub-populations and applied to two case studies, North Sea cod (Gadus morua) and Northeast Atlantic sardine (Sardina pilchardus). Considering that the biological components of a population can be partitioned into discrete spatial units, we extended this idea into a property of additivity of sub-population abundances. If the additivity results hold true for putative sub-populations, then assessment results based on sub-populations will provide information to develop and monitor the implementation of finer scale/local management. The simulation study confirmed that when sub-populations are independent and not too heterogeneous with regards to productivity, the sum of stock assessment model estimates of sub-populations’ SSB is similar to the SSB estimates of the meta-population. It also showed that a strong diffusion process can be detected and that the stronger the connection between SSB and recruitment, the better the diffusion process will be detected. On the other hand it showed that weak to moderate diffusion processes are not easy to identify and large differences between sub-populations productivities may be confounded with weak diffusion processes. The application to North Sea cod and Atlantic sardine exemplified how much insight can be gained. In both cases the results obtained were sufficiently robust to support the regional analysis. PMID:29364901

Distribution of hydrothermal Alvinocaridid shrimps: effect of geomorphology and specialization to extreme biotopes.

PubMed

Lunina, Anastasia A; Vereshchaka, Alexandr L

2014-01-01

The aim of this study is to review of our knowledge about distribution of recently known species of vent shrimps and to analyze factors influencing distribution patterns. Analyses are based upon (1) original material taken during eight cruises in the Atlantic Ocean (a total of 5861 individuals) and (2) available literature data from the Atlantic, Pacific, and Indian Oceans. Vent shrimps have two patterns of the species ranges: local (single vent site) and regional (three--six vent sites). Pacific species ranges are mainly of the local type and the Atlantic species ranges are of the regional type. The regional type of species ranges may be associated with channels providing easy larval dispersal (rift valleys, trenches), while the local type is characteristic for other areas. Specialization of a shrimp genus to extreme vent habitats leads to two effects: (1) an increase in the number of vent fields inhabited by the genus and (2) a decrease of species number within the genus.

First Record of the Larval Endoparasitoid Tachinaephagus zealandicus (Hymenoptera: Encyrtidae) From Fly Hosts Developing on Burnt Remains and in Pennsylvania.

PubMed

Rivers, David B

2016-05-01

Adults of the gregarious larval endoparasitoid Tachinaephagus zealandicus Ashmead (Hymenoptera: Encyrtidae) were collected from two species of carrion-inhabiting flies, Phormia regina Meigen (Diptera: Calliphoridae) and Hydrotaea aenescens Wiedemann (Muscidae), associated with the burnt remains of a domesticated pig, Sus scrofa L. (Artiodactyla: Suidae), during late summer in south central Pennsylvania. This represents the first reported occurrence of the wasp in the state and only the second in the mid-Atlantic region. Collection from P. regina is a new host record for T. zealandicus and also the first for this parasitoid being attracted to flies on burnt remains. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Long-distance transport of a West Atlantic stony coral on a plastic raft.

PubMed

Hoeksema, Bert W; Pedoja, Kevin; Poprawski, Yohann

2018-05-30

The occurrence of wide-spread coral species around isolated reefs and over long stretches of deep ocean cannot be explained by larval dispersal alone; their larval stage is too short for that, especially in brooding species (Nunes et al. 2011, de Souza et al. 2017). Rafting on natural substrates, such as volcanic pumice fragments, wooden logs and coconut shells has been recognized as an alternative means for transport in reef corals (Fielden 1893, Crossland 1952, Jokiel 1984). Fouling on ship hulls and oil platforms is a relatively new, anthropogenic way for coral migration and because it is fast, it escalates the risk of alien species introductions (Creed et al. 2017). This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Synergies between climate and management for Atlantic cod fisheries at high latitudes

PubMed Central

Kjesbu, Olav Sigurd; Bogstad, Bjarte; Devine, Jennifer A.; Gjøsæter, Harald; Howell, Daniel; Ingvaldsen, Randi B.; Nash, Richard D. M.; Skjæraasen, Jon Egil

2014-01-01

The widespread depletion of commercially exploited marine living resources is often seen as a general failure of management and results in criticism of contemporary management procedures. When populations show dramatic and positive changes in population size, this invariably leads to questions about whether favorable climatic conditions or good management (or both) were responsible. The Barents Sea cod (Gadus morhua) stock has recently increased markedly and the spawning stock biomass is now at an unprecedented high. We identify the crucial social and environmental factors that made this unique growth possible. The relationship between vital rates of Barents Sea cod stock productivity (recruitment, growth, and mortality) and environment is investigated, followed by simulations of population size under different management scenarios. We show that the recent sustained reduction in fishing mortality, facilitated by the implementation of a “harvest control rule,” was essential to the increase in population size. Simulations show that a drastic reduction in fishing mortality has resulted in a doubling of the total population biomass compared with that expected under the former management regime. However, management alone was not solely responsible. We document that prevailing climate, operating through several mechanistic links, positively reinforced management actions. Heightened temperature resulted in an increase in the extent of the suitable feeding area for Barents Sea cod, likely offering a release from density-dependent effects (for example, food competition and cannibalism) through prolonged overlap with prey and improved adult stock productivity. Management and climate may thus interact to give a positive outlook for exploited high-latitude marine resources. PMID:24550465

Synergies between climate and management for Atlantic cod fisheries at high latitudes.

PubMed

Kjesbu, Olav Sigurd; Bogstad, Bjarte; Devine, Jennifer A; Gjøsæter, Harald; Howell, Daniel; Ingvaldsen, Randi B; Nash, Richard D M; Skjæraasen, Jon Egil

2014-03-04

The widespread depletion of commercially exploited marine living resources is often seen as a general failure of management and results in criticism of contemporary management procedures. When populations show dramatic and positive changes in population size, this invariably leads to questions about whether favorable climatic conditions or good management (or both) were responsible. The Barents Sea cod (Gadus morhua) stock has recently increased markedly and the spawning stock biomass is now at an unprecedented high. We identify the crucial social and environmental factors that made this unique growth possible. The relationship between vital rates of Barents Sea cod stock productivity (recruitment, growth, and mortality) and environment is investigated, followed by simulations of population size under different management scenarios. We show that the recent sustained reduction in fishing mortality, facilitated by the implementation of a "harvest control rule," was essential to the increase in population size. Simulations show that a drastic reduction in fishing mortality has resulted in a doubling of the total population biomass compared with that expected under the former management regime. However, management alone was not solely responsible. We document that prevailing climate, operating through several mechanistic links, positively reinforced management actions. Heightened temperature resulted in an increase in the extent of the suitable feeding area for Barents Sea cod, likely offering a release from density-dependent effects (for example, food competition and cannibalism) through prolonged overlap with prey and improved adult stock productivity. Management and climate may thus interact to give a positive outlook for exploited high-latitude marine resources.

Genetic comparison of viral hemorrhagic septicemia virus isolates from North America and Europe

USGS Publications Warehouse

Oshima, K.H.; Higman, K.H.; Arakawa, C.K.; de Kinkelin, P.; Jorgensen, P.E.V.; Meyers, T.R.; Winton, J.R.

1993-01-01

Viral hemorrhagic septicemia virus (VHSV) is the cdusative agent of a serious rhabdoviral d~sease of rainbow trout Oncorhynchus myklss in Europe The first isolation of the vlrus in North Amenca occurred In the fall of 1988 when it was recovered from adult chinook 0 tshawytscha and coho 0 klsutch salmon returning to 2 hatcher~es in the state of Washington, USA The following year, VHSV was isolated from adult coho salmon at 2 other hatcher~es in northwestern Washington In 1990 and 1991, VHSV was recovered from Pacific cod Gadus macrocephalus caught in Pnnce Willlam Sound, Alaska Genetic vanation among the 4 isolates from salmon and the 1990 ~solate from Pacific cod was determ~ned uslng T1 nbonuclease finqerprlnt~ng In addition, 4 d~verse isolates from Europe were lncluded for companson The North Amencan isolates of VHSV formed a slngle fingerprint group In which the 4 isolates from salmonids were h~ghly similar to each other and the isolate from Pacific cod was related but less s~milar The 4 European ~solates which included an isolate from Atlantic cod G morhua, formed a second fingerpnnt group The genetic d~vers~ty among the isolates within each fingerpnnt group was estimated to be less than 5 % whlle the North Amencan and European strains of the virus were judged to differ by more than 5% The results indicate that the North Amerlcan isolates of VHSV are not of European ongln and that the virus may be enzootic wlthin the manne environment.

Effects of gill-net fishing on marine birds in a biological hotspot in the northwest Atlantic.

PubMed

Davoren, Gail K

2007-08-01

Marine biological hotspots, or areas where high abundances of species overlap in space and time, are ecologically important areas because energy flow through marine food webs, a key ecosystem process, is maximized in these areas. I investigated whether top predators aggregated at persistent spawning sites of a key forage fish species, capelin (Mallotus villosus), on the NE coast of Newfoundland during July and August 2000-2003. By examining the distributional patterns of top predators through ship-based surveys at multiple spatial and temporal scales, I found that the biomasses of birds-dominated by Common Murres (Uria aalge)-and mammals-dominated by whale species-were concentrated along the coast, with a biological hotspot forming near two persistent spawning sites of capelin in all years. The formation of this hotspot was well defined in space and time from middle of July to middle of August, likely coinciding with the spawning chronology of capelin. Within this hotspot, there was a high spatial and temporal overlap of Common Murres and gill nets set to capture Atlantic cod (Gadus morhua). This resulted in breeding murres becoming entangled in gill nets while feeding on spawning capelin. Despite an acknowledged uncertainty of bycatch mortality, estimates for the larger regional-scale area (1936-4973 murres/year; 0.2-0.6% of the breeding population) underestimated mortality relative to estimates within the hotspot (3053-14054 murres/year; 0.4-1.7%). Although fishing effort for Atlantic cod has declined substantially since the groundfish moratorium in 1992, chronic, unnatural, and additive mortality through bycatch continues in coastal Newfoundland. Restricted use of gill nets within this and other biological hotspots during the capelin spawning period appears to be a straightforward application of the "ecological and biologically significant area" management framework in Canada's Oceans Act. This protection would minimize murre bycatch and maintain ecosystem integrity.

Random forests, a novel approach for discrimination of fish populations using parasites as biological tags.

PubMed

Perdiguero-Alonso, Diana; Montero, Francisco E; Kostadinova, Aneta; Raga, Juan Antonio; Barrett, John

2008-10-01

Due to the complexity of host-parasite relationships, discrimination between fish populations using parasites as biological tags is difficult. This study introduces, to our knowledge for the first time, random forests (RF) as a new modelling technique in the application of parasite community data as biological markers for population assignment of fish. This novel approach is applied to a dataset with a complex structure comprising 763 parasite infracommunities in population samples of Atlantic cod, Gadus morhua, from the spawning/feeding areas in five regions in the North East Atlantic (Baltic, Celtic, Irish and North seas and Icelandic waters). The learning behaviour of RF is evaluated in comparison with two other algorithms applied to class assignment problems, the linear discriminant function analysis (LDA) and artificial neural networks (ANN). The three algorithms are used to develop predictive models applying three cross-validation procedures in a series of experiments (252 models in total). The comparative approach to RF, LDA and ANN algorithms applied to the same datasets demonstrates the competitive potential of RF for developing predictive models since RF exhibited better accuracy of prediction and outperformed LDA and ANN in the assignment of fish to their regions of sampling using parasite community data. The comparative analyses and the validation experiment with a 'blind' sample confirmed that RF models performed more effectively with a large and diverse training set and a large number of variables. The discrimination results obtained for a migratory fish species with largely overlapping parasite communities reflects the high potential of RF for developing predictive models using data that are both complex and noisy, and indicates that it is a promising tool for parasite tag studies. Our results suggest that parasite community data can be used successfully to discriminate individual cod from the five different regions of the North East Atlantic studied using RF.

Waste feed from coastal fish farms: A trophic subsidy with compositional side-effects for wild gadoids

NASA Astrophysics Data System (ADS)

Fernandez-Jover, Damian; Martinez-Rubio, Laura; Sanchez-Jerez, Pablo; Bayle-Sempere, Just T.; Lopez Jimenez, Jose Angel; Martínez Lopez, Francisco Javier; Bjørn, Pål-Arne; Uglem, Ingebrigt; Dempster, Tim

2011-03-01

Aquaculture of carnivorous fish species in sea-cages typically uses artificial feeds, with a proportion of these feeds lost to the surrounding environment. This lost resource may provide a trophic subsidy to wild fish in the vicinity of fish farms, yet the physiological consequences of the consumption of waste feed by wild fish remain unclear. In two regions in Norway with intensive aquaculture, we tested whether wild saithe ( Pollachius virens) and Atlantic cod ( Gadus morhua) associated with fish farms (F assoc), where waste feed is readily available, had modified diets, condition and fatty acid (FA) compositions in their muscle and liver tissues compared to fish unassociated (UA) with farms. Stomach content analyses revealed that both cod and saithe consumed waste feed in the vicinity of farms (6-96% of their diet was composed of food pellets). This translated into elevated body and liver condition compared to fish caught distant from farms for cod at both locations and elevated body condition for saithe at one of the locations. As a consequence of a modified diet, we detected significantly increased concentrations of terrestrial-derived fatty acids (FAs) such as linoleic (18:2ω6) and oleic (18:1ω9) acids and decreased concentrations of DHA (22:6ω3) in the muscle and/or liver of F assoc cod and saithe when compared with UA fish. In addition, the ω3:ω6 ratio clearly differed between F assoc and UA fish. Linear discriminant analysis (LDA) correctly classified 97% of fish into F assoc or UA origin for both cod and saithe based on the FA composition of liver tissues, and 89% of cod and 86% of saithe into F assoc or UA origin based on the FA composition of muscle. Thus, LDA appears a useful tool for detecting the influence of fish farms on the FA composition of wild fish. Ready availability of waste feed with high protein and fat content provides a clear trophic subsidy to wild fish in coastal waters, yet whether the accompanying side-effect of altered fatty acid compositions affects physiological performance or reproductive potential requires further research.

Helminth parasites of the oceanic horse mackerel Trachurus picturatus Bowdich 1825 (Pisces: Carangidae) from Madeira Island, Atlantic Ocean, Portugal.

PubMed

Costa, G; Melo-Moreira, E; Pinheiro de Carvalho, M A A

2012-09-01

The helminth parasite fauna of the oceanic horse mackerel Trachurus picturatus Bowdich 1825, caught off the Madeira Islands was composed of six different taxa. Prevalence and abundance of larval Anisakis sp. (Nematoda: Anisakidae) and Nybelinia lingualis (Trypanorhyncha: Tentaculariidae), the most common parasite taxa, were 24.3%, 0.9 and 37.9%, 0.7, respectively. Bolbosoma vasculosum (Acanthocephala: Polymorphidae) and the monogeneans Heteraxinoides atlanticus (Monogenea: Heteraxinidae) and Pseudaxine trachuri (Monogenea: Gastrocotylidae) were comparatively rare. The depauperate helminth fauna of the oceanic horse mackerel at Madeira compared to other geographical regions of the north-eastern Atlantic, namely the Azores banks and the West African coast, may be attributed to the paucity of nutrients off oceanic islands and to a low density of the fish population.

DNA barcoding coupled to HRM analysis as a new and simple tool for the authentication of Gadidae fish species.

PubMed

Fernandes, Telmo J R; Costa, Joana; Oliveira, M Beatriz P P; Mafra, Isabel

2017-09-01

This work aimed to exploit the use of DNA mini-barcodes combined with high resolution melting (HRM) for the authentication of gadoid species: Atlantic cod (Gadus morhua), Pacific cod (Gadus macrocephalus), Alaska pollock (Theragra chalcogramma) and saithe (Pollachius virens). Two DNA barcode regions, namely cytochrome c oxidase subunit I (COI) and cytochrome b (cytb), were analysed in silico to identify genetic variability among the four species and used, subsequently, to develop a real-time PCR method coupled with HRM analysis. The cytb mini-barcode enabled best discrimination of the target species with a high level of confidence (99.3%). The approach was applied successfully to identify gadoid species in 30 fish-containing foods, 30% of which were not as declared on the label. Herein, a novel approach for rapid, simple and cost-effective discrimination/clustering, as a tool to authenticate Gadidae fish species, according to their genetic relationship, is proposed. Copyright © 2017 Elsevier Ltd. All rights reserved.

Combined effects of fishing and oil spills on marine fish: Role of stock demographic structure for offspring overlap with oil.

PubMed

Stige, Leif Chr; Ottersen, Geir; Yaragina, Natalia A; Vikebø, Frode B; Stenseth, Nils Chr; Langangen, Øystein

2018-04-01

It has been proposed that the multiple pressures of fishing and petroleum activities impact fish stocks in synergy, as fishing-induced demographic changes in a stock may lead to increased sensitivity to detrimental effects of acute oil spills. High fishing pressure may erode the demographic structure of fish stocks, lead to less diverse spawning strategies, and more concentrated distributions of offspring in space and time. Hence an oil spill may potentially hit a larger fraction of a year-class of offspring. Such a link between demographic structure and egg distribution was recently demonstrated for the Northeast Arctic stock of Atlantic cod for years 1959-1993. We here estimate that this variation translates into a two-fold variation in the maximal proportion of cod eggs potentially exposed to a large oil spill. With this information it is possible to quantitatively account for demographic structure in prospective studies of population effects of possible oil spills. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effect of a fish stock's demographic structure on offspring survival and sensitivity to climate

PubMed Central

Stige, Leif Christian; Yaragina, Natalia A.; Langangen, Øystein; Bogstad, Bjarte; Stenseth, Nils Chr.; Ottersen, Geir

2017-01-01

Commercial fishing generally removes large and old individuals from fish stocks, reducing mean age and age diversity among spawners. It is feared that these demographic changes lead to lower and more variable recruitment to the stocks. A key proposed pathway is that juvenation and reduced size distribution causes reduced ranges in spawning period, spawning location, and egg buoyancy; this is proposed to lead to reduced spatial distribution of fish eggs and larvae, more homogeneous ambient environmental conditions within each year-class, and reduced buffering against negative environmental influences. However, few, if any, studies have confirmed a causal link from spawning stock demographic structure through egg and larval distribution to year class strength at recruitment. We here show that high mean age and size in the spawning stock of Barents Sea cod (Gadus morhua) is positively associated with high abundance and wide spatiotemporal distribution of cod eggs. We find, however, no support for the hypothesis that a wide egg distribution leads to higher recruitment or a weaker recruitment–temperature correlation. These results are based on statistical analyses of a spatially resolved data set on cod eggs covering a period (1959−1993) with large changes in biomass and demographic structure of spawners. The analyses also account for significant effects of spawning stock biomass and a liver condition index on egg abundance and distribution. Our results suggest that the buffering effect of a geographically wide distribution of eggs and larvae on fish recruitment may be insignificant compared with other impacts. PMID:28115694

Water masses and mesoscale control on latitudinal and cross-shelf variations in larval fish assemblages off NW Africa

NASA Astrophysics Data System (ADS)

Olivar, M. Pilar; Sabatés, Ana; Pastor, Maria V.; Pelegrí, Josep L.

2016-11-01

We explore the associations between larval fish assemblages and oceanographic conditions in the upper ocean (top 200 m) along the African slope, from tropical (15°N) to subtropical (35°N) latitudes, during a period of intense upwelling. In this extensive region, the northward Mauritanian Current and Poleward Undercurrent carry South Atlantic Central Waters (SACW) while the southward Canary Upwelling Current transports North Atlantic Central Waters (NACW). South of Cape Blanc we only find SACW, and north of Cape Blanc there is NACW far offshore and a combination of NACW and SACW nearshore, separated by the Canary Upwelling Front (CUF). The larvae of different myctophid species serve as indicators of the water masses, e.g. S. veranyi and M. punctatum were found in some coastal stations that were dominated by NACW, while the tropical mesopelagic B. argyrogaster, H. macrochir, M. affine and S. kreffti were associated to the SACW. The along-slope offshore convergence of NACW and SACW takes place at the Cape Verde Frontal Zone (CVFZ), representing a region of extensive offshore export for larvae of coastal species, S. pilchardus and E. encrasicolus, far from their nearshore spawning area. The large-scale frontal systems (CVFZ and CUF) and mesoscale eddies contribute to retain larvae within productive waters, influencing both coastal and oceanic species.

Larval digenean preferences in two sympatric snail species at differing tidal levels off the Atlantic coast of Patagonia.

PubMed

Di Giorgio, G; Gilardoni, C; Bagnato, E; Cremonte, F; Ituarte, C

2017-11-01

Larval stages of the trematodes Maritrema madrynense and Hemiuroidea fam. gen. et sp. differentially parasitized Siphonaria lessonii and S. lateralis, two sympatric pulmonate snail species on the rocky intertidal shore at Puerto Deseado, south-western Atlantic coast of Patagonia, Argentina. Snail specimens were collected at two sampling sites with contrasting physical-chemical characteristics. One site, in the upper intertidal, was exposed to sewage from fish-processing plants, greater hydrodynamic forcing and desiccation, a wider temperature range, longer exposure to ultraviolet radiation and higher abundance of birds. The second site, in the lower intertidal, was generally characterized by less stressful environmental conditions. At both sites, S. lateralis showed a markedly higher density than S. lessonii (55.13 vs. 5.87 snails/m2, respectively). Despite this, the prevalence of both digeneans was higher in S. lessonii (17.37% and 3.52% for M. madrynense and Hemiuroidea, respectively) than in S. lateralis (0.09% and 0% for M. madrynense and Hemiuroidea, respectively). This study demonstrates high parasite specificity for the host. Low densities of S. lessonii are attributed to castration of parasitized hosts and reduction of their physiological condition. The prevalence and intensity of infection of both digenean parasites were higher at the more stressful, upper intertidal site, thus suggesting that a higher abundance of birds and exposure to sewage pollution may promote the transmission of trematodes.

Linking North Atlantic Teleconnections to Latitudinal Variability of Wave Climate Along the North American Atlantic Coast

NASA Astrophysics Data System (ADS)

Provancha, C.; Adams, P. N.; Hegermiller, C.; Storlazzi, C. D.

2015-12-01

Shoreline change via coastal erosion and accretion is largely influenced by variations in ocean wave climate. Identifying the sources of these variations is challenging because the timing of wave energy delivery varies over multiple timescales within ocean basins. We present the results of an investigation of USACE Wave Information Studies hindcast hourly wave heights, periods, and directions along the North American Atlantic coast from 1980-2012, designed to explore links between wave climate and teleconnection patterns. Trends in median and extreme significant wave heights (SWHs) demonstrate that mean monthly SWHs increased from 1 to 5 cm/yr along the roughly 3000 km reach of study area, with changes in hurricane season waves appearing to be most influential in producing the overall trends. Distributions of SWHs categorized by North Atlantic Oscillation (NAO) phase, show that positive-period NAO SWHs are greater than negative-period NAO SWHs along the entire eastern seaboard (25°N to 45°N). The most prominent wave direction off Cape Cod, MA during positive-period NAO is approximately 105°, as compared to approximately 75° during negative-period NAO. Prominent wave directions between Cape Canaveral, FL, and Savannah, GA exhibit a similar shift but during opposite phases of the NAO. The results of this analysis suggest that the atmosphere-ocean interactions associated with contrasting NAO phases can significantly change the wave climate observed offshore along the North American Atlantic coast, altering alongshore wave energy fluxes and sediment transport patterns along the coast.

Nitrogen isotopic analysis of carbonate-bound organic matter in modern and fossil fish otoliths

NASA Astrophysics Data System (ADS)

Lueders-Dumont, Jessica A.; Wang, Xingchen T.; Jensen, Olaf P.; Sigman, Daniel M.; Ward, Bess B.

2018-03-01

The nitrogen isotopic composition (δ15N) of otolith-bound organic matter (OM) is a potential source of information on dietary history of bony fishes. In contrast to the δ15N of white muscle tissue, the most commonly used tissue for ecological studies, the δ15N of otolith-bound OM (δ15Noto) provides a record of whole life history. More importantly, δ15Noto can be measured in contexts where tissue is not available, for example, in otolith archives and sedimentary deposits. The utility and robustness of otolith δ15N analysis was heretofore limited by the low N content of otoliths, which precluded the routine measurement of individual otoliths as well as the thorough cleaning of otolith material prior to analysis. Here, we introduce a new method based on oxidation to nitrate followed by bacterial conversion to N2O. The method requires 200-fold less N compared to traditional combustion approaches, allowing for thorough pre-cleaning and replicated analysis of individual otoliths of nearly any size. Long term precision of δ15Noto is 0.3‰. Using an internal standard of Atlantic cod (Gadus morhua) otoliths, we examine the parameters of the oxidative cleaning step with regard to oxidant (potassium persulfate and sodium hypochlorite), temperature, and time. We also report initial results that verify the usefulness of δ15Noto for ecological studies. For three salmonid species, left and right otoliths from the same fish are indistinguishable. We find that the δ15Noto of pink salmon (Oncorhynchus gorbuscha) is related to the size of the fish for this species. We find that intra-cohort δ15Noto standard deviation for wild pink salmon, farmed brown trout (Salmo trutta), and farmed rainbow trout (Oncorhynchus mykiss) are all 0.4‰ or less, suggesting that δ15Noto will be valuable for population-level studies. Lastly, our protocol yields reproducible data for both δ15Noto and otolith N content in 17th century Atlantic cod otoliths. We find that 17th century cod are approximately 2 ‰ higher than modern cod, arguably consistent with either the larger size of the otoliths (and thus inferred for the fish) or with changes in baseline (primary producer) δ15N in the modern coastal ocean compared to the past. All told, the results of this study bode well for the utility of otolith-bound δ15N for investigating the environment and ecology of modern and past fish.

Human exposure to lead, cadmium and mercury through fish and seafood product consumption in Italy: a pilot evaluation.

PubMed

Pastorelli, A A; Baldini, M; Stacchini, P; Baldini, G; Morelli, S; Sagratella, E; Zaza, S; Ciardullo, S

2012-01-01

The presence of selected toxic heavy metals, such as cadmium (Cd), lead (Pb) and mercury (Hg), was investigated in fish and seafood products, namely, blue mussel, carpet shell clam, European squid, veined squid, deep-water rose shrimp, red mullet, European seabass, gilthead seabream, Atlantic cod, European hake, Atlantic bluefin tuna and swordfish so as to assess their human exposure through diet. Metals were detected by quadrupole inductively coupled plasma mass spectrometry (Q-ICP-MS) and hydride generation atomic absorption spectrometry (Hg-AAS). Measurements of Cd, Pb and Hg were performed by means of analytical methods validated in compliance with UNI CEI EN ISO/IEC 17025 [2005. General requirements for the competence of testing and calibration laboratories. Milano (Italy): UNI Ente Nazionale Italiano di Unificazione]. The exposure assessment was undertaken matching the levels of Cd, Pb and total Hg with consumption data related to fish and seafood products selected for this purpose. In order to establish human health implications, the estimated weekly intakes (EWIs) for Cd, Pb and Hg were compared with the standard tolerable weekly intakes (TWI) for Cd and provisional tolerable weekly intakes (PTWIs) for Pb and Hg stipulated by the European Food Safety Authority (EFSA) and the Food and Agriculture Organization/World Health Organization (FAO/WHO) Joint Expert Committee on Food Additives (JECFA). The found metal concentrations were largely below the maximum levels (MLs) established at the European Union level with the exception of Cd. This metal exceeded the MLs in squid, red mullet, European hake and Atlantic cod. Squid and blue mussel showed the highest Pb concentrations which accounted for 60% and 10% of the MLs, respectively. Highest Hg levels were found in predatory fish. The concentrations of Hg in swordfish, Atlantic bluefin tuna and red mullet accounted for 50%, 30% and 30% of the MLs, respectively. The EWIs for Cd, Pb and Hg related to the consumption of fish and seafood products by the median of the Italian total population accounted for 20%, 1.5% and 10% of the standard TWI for Cd as well as PTWIs for Pb and Hg, respectively. Furthermore, the EWIs estimated using consumption data concerning Italian consumers did not exceed the standard TWI and PTWIs, except for Cd at 95th percentile.

Deformation of the notochord by pressure from the swim bladder may cause malformation of the vertebral column in cultured Atlantic cod Gadus morhua larvae: a case study.

PubMed

Grotmol, Sindre; Kryvi, Harald; Totland, Geir K

2005-06-01

This study describes a malformation that frequently occurs in Atlantic cod Gadus morhua in intensive culture systems. The malformation is characterised by a slight upward tilt of the head and an indented dorsal body contour at the transition between the head and the trunk, and is first evident to the fish farmer when the cod reach the juvenile stage. These abnormalities are associated with malformations of the neurocranium, the cranial region of the vertebral column and the cranial part of the epaxial lateral muscles. The pathogenesis involves deformation of the notochord, which can be observed in larvae about 7 d post-hatch (dph) and onwards. The deformation consists of an increase in dorsal curvature of the notochord in the region above the swim bladder. In the same region, the notochord has an abnormal cross-sectional outline, characterised by a groove-shaped, longitudinal impression along the ventral surface of the sheath. In most cases, the swim bladder fills the impression, and in severely affected larvae it forms a hernia-like lesion in the notochord. The deformation of the notochord seems to be conveyed to the vertebral body anlagen (chordacentra), which in teleosts are formed by mineralisation within the notochordal sheath. The vertebral bodies adopt an abnormal wedge shape, with a ventral concavity, and the neural arches are most often S-shaped. A continuous range of degrees of the malformation can be observed. All these pathomorphological characteristics are compatible with the notion that the notochord has been subjected to an upward mechanical force, probably generated by a persistent increase in pressure between the swim bladder and the notochord during the period of development of the vertebral anlagen. Our results thus indicate that the critical time window with regard to development of the malformation is from 18 to 36 dph, when the initial formation of the vertebrae takes place. Chronic overinflation of the swim bladder or pathological dilatation of the digestive tract may cause the lesions, and aetiology may be related to factors that influence the function of these organs.

Episodic Eolian Sand Deposition in the Past 4000 Years in Cape COD National Seashore, Massachusetts, USA in Response to Possible Hurricane/storm and Anthropogenic Disturbances

NASA Astrophysics Data System (ADS)

Forman, Steven

2015-02-01

The eolian sand depositional record for a dune field within Cape Cod National Seashore, Massachusetts is posit as a sensitive indicator of environmental disturbances in the late Holocene from a combination of factors such as hurricane/storm and forest fire occurrence, and anthropogenic activity. Stratigraphic and sedimentologic observations, particularly the burial of spodosol-like soils, and associated 14C and OSL ages that are concordant indicate at least six eolian depositional events at ca. 3750, 2500, 1800, 960, 430 and <250 years ago. The two oldest events are documented at just one locality and thus, the pervasiveness of this eolian activity is unknown. However, the four younger events are identified in three or more sites and show evidence for dune migration and sand sheet accretion. The timing of eolian deposition, particularly the initiation age, corresponds to documented periods of increased storminess/hurricane activity in the North Atlantic Ocean at ca. 2.0 to 1.6, and 1.0 ka and also a wetter coastal climate, which suppressed the occurrence of forest fire. Thus, local droughts are not associated with periods of dune movement in this mesic environment. Latest eolian activity on outer Cape Cod commenced in the past 300 to 500 years and may reflect multiple factors including broad-scale landscape disturbance with European colonization, an increased incidence of forest fires and heightened storminess. Eolian systems of Cape Cod appear to be sensitive to landscape disturbance and prior to European settlement may reflect predominantly hurricane/storm disturbance, despite generally mesic conditions in past 4 ka.

Early development and molecular plasticity in the Mediterranean sea urchin Paracentrotus lividus exposed to CO2-driven acidification.

PubMed

Martin, Sophie; Richier, Sophie; Pedrotti, Maria-Luiza; Dupont, Sam; Castejon, Charlotte; Gerakis, Yannis; Kerros, Marie-Emmanuelle; Oberhänsli, François; Teyssié, Jean-Louis; Jeffree, Ross; Gattuso, Jean-Pierre

2011-04-15

Ocean acidification is predicted to have significant effects on benthic calcifying invertebrates, in particular on their early developmental stages. Echinoderm larvae could be particularly vulnerable to decreased pH, with major consequences for adult populations. The objective of this study was to understand how ocean acidification would affect the initial life stages of the sea urchin Paracentrotus lividus, a common species that is widely distributed in the Mediterranean Sea and the NE Atlantic. The effects of decreased pH (elevated P(CO(2))) were investigated through physiological and molecular analyses on both embryonic and larval stages. Eggs and larvae were reared in Mediterranean seawater at six pH levels, i.e. pH(T) 8.1, 7.9, 7.7, 7.5, 7.25 and 7.0. Fertilization success, survival, growth and calcification rates were monitored over a 3 day period. The expression of genes coding for key proteins involved in development and biomineralization was also monitored. Paracentrotus lividus appears to be extremely resistant to low pH, with no effect on fertilization success or larval survival. Larval growth was slowed when exposed to low pH but with no direct impact on relative larval morphology or calcification down to pH(T) 7.25. Consequently, at a given time, larvae exposed to low pH were present at a normal but delayed larval stage. More surprisingly, candidate genes involved in development and biomineralization were upregulated by factors of up to 26 at low pH. Our results revealed plasticity at the gene expression level that allows a normal, but delayed, development under low pH conditions.

Multidimensionality of behavioural phenotypes in Atlantic cod, Gadus morhua.

PubMed

Meager, Justin J; Fernö, Anders; Skjæraasen, Jon Egil; Järvi, Torbjörn; Rodewald, Petra; Sverdrup, Gisle; Winberg, Svante; Mayer, Ian

2012-06-25

Much of the inter-individual variation observed in animal behaviour is now attributed to the existence of behavioural phenotypes or animal personalities. Such phenotypes may be fundamental to fisheries and aquaculture, yet there have been few detailed studies of this phenomenon in exploited marine animals. We investigated the behavioural and neuroendocrine responses of Atlantic cod (Gadus morhua L.), to situations reflecting critical ecological challenges: predator attacks and territorial challenges. Both hatchery-reared and wild fish were tested and behavioural profiles were compared with baseline conditions. We then used an objective, multivariate approach, rather than assigning individuals along one-dimensional behavioural axes, to examine whether distinct behavioural phenotypes were present. Our results indicate that two distinct behavioural phenotypes were evident in fish from each background. In hatchery-reared fish, phenotypes displayed divergent locomotor activity, sheltering, brain monoamine concentrations and responses to competitive challenges. In wild fish, phenotypes were distinguished primarily by locomotor activity, sheltering and responsiveness to predator stimuli. Hatcheries presumably represent a more stressful social environment, and social behaviour and neuroendocrine responses were important in discerning behavioural phenotypes in hatchery fish, whereas antipredator responses were important in discerning phenotypes in wild fish that have previously encountered predators. In both fish types, behavioural and physiological traits that classified individuals into phenotypes were not the same as those that were correlated across situations. These results highlight the multidimensionality of animal personalities, and that the processes that regulate one suite of behavioural traits may be very different to the processes that regulate other behaviours. Copyright © 2012 Elsevier Inc. All rights reserved.

A survey of dioxin-like contaminants in fish from recreational fishing.

PubMed

Heimstad, Eldbjørg Sofie; Grønstøl, Gaute; Hetland, Karl Torstein; Alarcon, Javier Martinez; Rylander, Charlotta; Mariussen, Espen

2015-08-01

The dioxin and dioxin-like compounds are regarded as one of the most toxic group of environmental contaminants. Food for the commercial market is regularly monitored for their dioxin levels and the concentration allowed in food is strictly regulated. Less is known about locally caught fish from recreational fishing, which is often brought home for consumption. This can be fish caught from nearby lakes or streams or fish with marine origin close to industrial areas or harbours that are not regularly monitored for their dioxin levels. In this study, we established collaboration with schools in 13 countries. We received 203 samples of 29 different fish species of which Atlantic cod was the most abundant followed by brown trout and pollock. In general, the majority of samples from the participating countries had low concentrations (between 0.1 and 0.2 pg/g chemical-activated luciferase gene expression toxic equivalency wet weight (CALUX TEQ w.w.)) of dioxins and dioxin-like PCBs. Only 18 samples had concentrations above 1 pg/g CALUX TEQ w.w., and only 2 dab samples had concentration above maximum levels set by the European Commission. The Atlantic cod samples showed a significant reduction in the concentrations of dioxins with increasing latitude indicating less contamination of dioxin and dioxin-like compounds in the north of Norway. The results indicate that a moderate consumption of self-caught fish at presumed non-contaminated sites does not represent a major risk for exposure to dioxins or dioxin-like compounds at concentrations associated with adverse health effects. Recreational fishermen should, however, obtain knowledge about local fish consumption advice.

Effects of temperature on specific dynamic action in Atlantic cod Gadus morhua.

PubMed

Tirsgaard, Bjørn; Svendsen, Jon Christian; Steffensen, John Fleng

2015-02-01

Growth requires that energy is directed towards ingestion, digestion, absorption and assimilation of a meal; energy expenditures are often expressed as the specific dynamic action (SDA). While SDA is an important part of fish energy budgets and strongly affected by water temperature, temperature effects are not known across a wide temperature range in Atlantic cod Gadus morhua. The objective of this study was to examine effects of temperature (2, 5, 10, 15 or 20 °C) on the energetic cost and time used for SDA in juvenile G. morhua by intermittent flow respirometry. At each temperature, G. morhua were fed a meal of herring (Clupea harengus) corresponding to 5 % of the body mass. Standard metabolic rates measured pre-feeding and post-feeding metabolic rates were measured to determine SDA. The study showed that SDA coefficients (%, SDA energy divided by meal energy) were significantly lower at 2 and 10 °C (5.4-6.3 %) compared to 5, 15 and 20 °C (10.4-12.4 %), while SDA duration increased significantly from 80 h at 10 °C to 130-160 h at 2, 15 and 20 °C and reached a maximum of 250 h at 5 °C. The significant decrease in SDA duration at 10 °C combined with a low SDA coefficient suggests that water temperatures close to 10 °C may represent the optimum temperatures for SDA in this population of G. morhua. Our results suggest that SDA is not a simple function of temperature, but may vary with temperature in a more complex fashion.

Earth Observations taken by Expedition 34 crewmember

NASA Image and Video Library

2013-02-14

ISS034-E-48455 (14 Feb. 2013) --- Looking out at Earth?s surface from the International Space Station (ISS), astronauts and cosmonauts frequently observe sunglint highlighting both ocean and inland water surfaces. The Atlantic Ocean, including Cape Cod Bay and Buzzards Bay, along the coastlines of Massachusetts and Rhode Island, has a burnished, mirror-like appearance in this image. This is due to sunlight reflected off the water surface back towards the station crew member who took the photo. The peak reflection point is towards the right side of the image, lending the waters of Long Island Sound and the upper Massachusetts coastline an even brighter appearance. Sunglint also illuminates the surface waters of Chesapeake Bay, located over 400 kilometers (250 miles) to the southwest of the tip of Long Island. This suggests that the Sun was low on the horizon due to the observed extent of the sunglint effect. The time of image acquisition, approximately 4:26 p.m. Eastern Standard Time, was about one hour before local sunset. There is little in this image to indicate that the region was still recovering from a major winter storm that dropped almost one meter (three feet) of snow over much of the northeastern USA less than a week earlier. The high viewing angle from the space station also allows Earth?s curvature, or limb, to be seen; blue atmospheric layers gradually fade into the darkness of space across the top part of the image. Low clouds near Cape Cod, Long Island, and further down the Atlantic coastline cast shadows over the water surfaces, reducing the sunglint in some areas.

Different key roles of mesoscale oceanographic structures and ocean bathymetry in shaping larval fish distribution pattern: A case study in Sicilian waters in summer 2009

NASA Astrophysics Data System (ADS)

Cuttitta, Angela; Quinci, Enza Maria; Patti, Bernardo; Bonomo, Sergio; Bonanno, Angelo; Musco, Marianna; Torri, Marco; Placenti, Francesco; Basilone, Gualtiero; Genovese, Simona; Armeri, Grazia Maria; Spanò, Antonina; Arculeo, Marco; Mazzola, Antonio; Mazzola, Salvatore

2016-09-01

Fish larvae data collected in year 2009 were used to examine the effects of particular environmental conditions on the structure of larval assemblages in two oligotrophic Mediterranean areas (the Southern Tyrrhenian Sea and the Strait of Sicily). For this purpose, relationships with environmental variables (temperature, salinity and fluorescence), zooplankton biomass, water circulation and bathymetry are discussed. Hydrodynamic conditions resulted very differently between two study areas. The Southern Tyrrhenian Sea was characterized by moderate shallow circulation compared to the Strait of Sicily. In this framework, distribution pattern of larval density in the Tyrrhenian Sea was mainly driven by bathymetry, due to spawning behavior of adult fish. There, results defined four assemblages: two coastal assemblages dominated by pelagic and demersal families and two oceanic assemblages dominated by mesopelagic species more abundant in western offshore and less abundant in eastern offshore. The assemblage variations in the western side was related to the presence of an anti-cyclonic gyre in the northern side of the Gulf of Palermo, while in the eastern side the effect of circulation was not very strong and the environmental conditions rather than the dispersal of species determined the larval fish communities structure. Otherwise in the Strait of Sicily the currents were the main factor governing the concentration and the assemblage structure. In fact, the distribution of larvae was largely consistent with the branch of the Atlantic Ionian Stream (AIS). Moreover, very complex oceanographic structures (two cyclonic circulations in the western part of the study area and one anti-cyclonic circulation in the eastern part) caused the formation of uncommon spatial distribution of larval fish assemblages, only partially linked to bathymetry of the study area. Typically coastal larvae (pelagic families: Engraulidae and Clupeidae) were mostly concentrated in the offshore areas and off Capo Passero, where the presence of a thermo-haline front maintained their position in an area with favourable conditions for larval fish feeding and growth.

A Marriage Of Larval Modeling And Empirical Data: Linking Adult, Larval And Juvenile Scallops In An Estuary

NASA Astrophysics Data System (ADS)

Bayer, S.; Wahle, R.; Brooks, D. A.; Brady, D. C.

2016-02-01

The giant sea scallop, Placopecten magellanicus, is a commercially valuable sedentary broadcast spawner that occupies offshore banks and coastal bays and estuaries in the Northwest Atlantic. Although area closures have helped repopulate depleted scallop populations, little is known about whether populations at densities that yield larvae supply local or distant populations. Surveying scallop populations in the Damariscotta River estuary in Maine during the 2013 and 2014 spawning seasons, and settling out spat bags to collect settling larvae along the gradient of the estuary, we were able to compare adult densities to newly settled juvenile (`spat') abundance. Using the location where we found a high density of adults, we incorporated previously published behavior, pelagic larval duration, wind and current data into a particle dispersal model within the estuary to determine likely sinks for larvae from the 2013 and 2014 spawning seasons. Preliminary model simulations demonstrate where in the estuary swimming is effective in affecting water column position for larvae, and that most larvae are retained much closer to the mouth of the estuary than previously expected. Combining larval dispersal modeling with empirical data on adult densities and spat settlement on the scale of an embayment or estuary may be helpful in determining sources, sinks and areas that are both sources and sinks for shellfish species that are endangered or economically critical. This may aid in determining small area closures or Marine Protected Areas along coastal regions in the Gulf of Maine and beyond.

Dangerous dining: surface foraging of North Atlantic right whales increases risk of vessel collisions.

PubMed

Parks, Susan E; Warren, Joseph D; Stamieszkin, Karen; Mayo, Charles A; Wiley, David

2012-02-23

North Atlantic right whales are critically endangered and, despite international protection from whaling, significant numbers die from collisions with ships. Large groups of right whales migrate to the coastal waters of New England during the late winter and early spring to feed in an area with large numbers of vessels. North Atlantic right whales have the largest per capita record of vessel strikes of any large whale population in the world. Right whale feeding behaviour in Cape Cod Bay (CCB) probably contributes to risk of collisions with ships. In this study, feeding right whales tagged with archival suction cup tags spent the majority of their time just below the water's surface where they cannot be seen but are shallow enough to be vulnerable to ship strike. Habitat surveys show that large patches of right whale prey are common in the upper 5 m of the water column in CCB during spring. These results indicate that the typical spring-time foraging ecology of right whales may contribute to their high level of mortality from vessel collisions. The results of this study suggest that remote acoustic detection of prey aggregations may be a useful supplement to the management and conservation of right whales.

Parasites as biological tags in marine fisheries research: European Atlantic waters.

PubMed

Mackenzie, K; Hemmingsen, W

2015-01-01

Studies of the use of parasites as biological tags for stock identification and to follow migrations of marine fish, mammals and invertebrates in European Atlantic waters are critically reviewed and evaluated. The region covered includes the North, Baltic, Barents and White Seas plus Icelandic waters, but excludes the Mediterranean and Black Seas. Each fish species or ecological group of species is treated separately. More parasite tag studies have been carried out on Atlantic herring Clupea harengus than on any other species, while cod Gadus morhua have also been the subject of many studies. Other species that have been the subjects of more than one study are: blue whiting Micromesistius poutassou, whiting Merlangius merlangus, haddock Melanogrammus aeglefinus, Norway pout Trisopterus esmarkii, horse mackerel Trachurus trachurus and mackerel Scomber scombrus. Other species are dealt with under the general headings redfishes, flatfish, tunas, anadromous fish, elasmobranchs, marine mammals and invertebrates. A final section highlights how parasites can be, and have been, misused as biological tags, and how this can be avoided. It also reviews recent developments in methodology and parasite genetics, considers the potential effects of climate change on the distributions of both hosts and parasites, and suggests host-parasite systems that should reward further research.

North Atlantic summers have warmed more than winters since 1353, and the response of marine zooplankton.

PubMed

Kamenos, Nicholas A

2010-12-28

Modeling and measurements show that Atlantic marine temperatures are rising; however, the low temporal resolution of models and restricted spatial resolution of measurements (i) mask regional details critical for determining the rate and extent of climate variability, and (ii) prevent robust determination of climatic impacts on marine ecosystems. To address both issues for the North East Atlantic, a fortnightly resolution marine climate record from 1353-2006 was constructed for shallow inshore waters and compared to changes in marine zooplankton abundance. For the first time summer marine temperatures are shown to have increased nearly twice as much as winter temperatures since 1353. Additional climatic instability began in 1700 characterized by ∼5-65 year climate oscillations that appear to be a recent phenomenon. Enhanced summer-specific warming reduced the abundance of the copepod Calanus finmarchicus, a key food item of cod, and led to significantly lower projected abundances by 2040 than at present. The faster increase of summer marine temperatures has implications for climate projections and affects abundance, and thus biomass, near the base of the marine food web with potentially significant feedback effects for marine food security.

Rising seas and sinking coastal marshes: Implications to Atlantic waterbirds

USGS Publications Warehouse

Erwin, R.M.; Prosser, D.J.; Sanders, G.

2000-01-01

Along the mid-Atlantic U.S. coast, relative sea level rise (RSLR) is higher than the global average of 1.5-2.0 mm/yr, ranging from about 2.5 in parts of Virginia and Delaware to about 4.0 in New Jersey (Atlantic City and Sandy Hook) and near the mouth of Chesapeake Bay, Virginia. Very few data exist on marsh elevation changes, but information from some areas in Virginia, New Jersey and New York suggest that marsh islands are not 'keeping pace' with this RSLR. We began a study in 1999 that addresses changes in sea level and marsh elevation at sites from Cape Cod to s. Virginia known to be important areas for migratory waterbirds, including waterfowl, shorebirds, wading birds, and seabirds. Marsh monitoring sites have been established and data on microhabitat use by birds during all 4 seasons is being collected at these sites. Species expected to be most vulnerable to RSLR in these marshes are breeding species such as Laughing Gulls, Common, Gull-billed and Forster's terns, Clapper Rails, and American Black Ducks. Most of these species are of special concern at state, regional, or national levels. We show how important this region to these species from a flyway perspective, with> 70% of all Atlantic coast Laughing Gulls and Forster's Terns nesting from New Jersey to Virginia.

A novel function for the pineal organ in the control of swim depth in the Atlantic halibut larva

NASA Astrophysics Data System (ADS)

Novales Flamarique, Iñigo

2002-02-01

The pineal organ of vertebrates is a photo-sensitive structure that conveys photoperiod information to the brain. This information influences circadian rhythm and related metabolic processes such as thermoregulation, hatching time, body growth, and the timing of reproduction. This study demonstrates extra-ocular light responses that control swim depth in the larva of the Atlantic halibut, Hyppoglosus hyppoglosus. Young larvae without a functional eye (<29 days) swim upwards after an average delay of 5 s following the onset of a downwelling light stimulus, but sink downwards a few seconds later. Older larvae (>=29 days), which possess a functional eye, swim immediately downwards (microsecond delay) following the onset of the light stimulus, but proceed to swim upwards several seconds later. These two response patterns are thus opposite in polarity and have different time kinetics. Because the pineal organ of the Atlantic halibut develops during the embryonic stage, and because it is the only centre in the brain that expresses functional visual pigments (opsins) at early larval stages, it is the only photosensory organ capable of generating the extra-ocular responses observed.

The little shrimp that could: phylogeography of the circumtropical Stenopus hispidus (Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages

PubMed Central

Iacchei, Matthew; Coleman, Richard R.; Gaither, Michelle R.; Browne, William E.; Bowen, Brian W.; Toonen, Robert J.

2018-01-01

The banded coral shrimp, Stenopus hispidus (Crustacea: Decapoda: Stenopodidea) is a popular marine ornamental species with a circumtropical distribution. The planktonic larval stage lasts ∼120–253 days, indicating considerable dispersal potential, but few studies have investigated genetic connectivity on a global scale in marine invertebrates. To resolve patterns of divergence and phylogeography of S. hispidus, we surveyed 525 bp of mitochondrial cytochrome c oxidase subunit I (COI) from 198 individuals sampled at 10 locations across ∼27,000 km of the species range. Phylogenetic analyses reveal that S. hispidus has a Western Atlantic lineage and a widely distributed Indo-Pacific lineage, separated by sequence divergence of 2.1%. Genetic diversity is much higher in the Western Atlantic (h = 0.929; π = 0.004) relative to the Indo-Pacific (h = 0.105; π < 0.001), and coalescent analyses indicate that the Indo-Pacific population expanded more recently (95% HPD (highest posterior density) = 60,000–400,000 yr) than the Western Atlantic population (95% HPD = 300,000–760,000 yr). Divergence of the Western Atlantic and Pacific lineages is estimated at 710,000–1.8 million years ago, which does not readily align with commonly implicated colonization events between the ocean basins. The estimated age of populations contradicts the prevailing dispersal route for tropical marine biodiversity (Indo-Pacific to Atlantic) with the oldest and most diverse population in the Atlantic, and a recent population expansion with a single common haplotype shared throughout the vast Indian and Pacific oceans. In contrast to the circumtropical fishes, this diminutive reef shrimp challenges our understanding of conventional dispersal capabilities of marine species. PMID:29527409

Influence of Development and Dietary Phospholipid Content and Composition on Intestinal Transcriptome of Atlantic Salmon (Salmo salar)

PubMed Central

De Santis, Christian; Taylor, John F.; Martinez-Rubio, Laura; Boltana, Sebastian; Tocher, Douglas R.

2015-01-01

The inclusion of intact phospholipids in the diet is essential during larval development and can improve culture performance of many fish species. The effects of supplementation of dietary phospholipid from marine (krill) or plant (soy lecithin) sources were investigated in Atlantic salmon, Salmo salar. First feeding fry were fed diets containing either krill oil or soybean lecithin supplying phospholipid at 2.6%, 3.2%, 3.6% and 4.2% of diet. Fish were sampled at ~ 2.5 g (~1,990°day post fertilization, dpf) and ~10 g (2,850°dpf). By comparison of the intestinal transcriptome in specifically chosen contrasts, it was determined that by 2,850°dpf fish possessed a profile that resembled that of mature and differentiated intestinal cell types with a number of changes specific to glycerophospholipid metabolism. It was previously shown that intact phospholipids and particularly phosphatidylcholine are essential during larval development and that this requirement is associated with the inability of enterocytes in young fry to endogenously synthesize sufficient phospholipid for the efficient export of dietary lipid. In the immature phase (~1,990°dpf), the dietary phospholipid content as well as its class composition impacted on several biochemical and morphological parameters including growth, but these differences were not associated with differences in intestinal transcriptomes. The results of this study have made an important contribution to our understanding of the mechanisms associated with lipid transport and phospholipid biosynthesis in early life stages of fish. PMID:26488165

Chasing a changing climate: Reproductive and dispersal traits predict how sessile species respond to global warming

USGS Publications Warehouse

Archambault, Jennifer M.; Cope, W. Gregory; Kwak, Thomas J.

2018-01-01

AimStudies of species' range shifts have become increasingly relevant for understanding ecology and biogeography in the face of accelerated global change. The combination of limited mobility and imperilled status places some species at a potentially greater risk of range loss, extirpation or extinction due to climate change. To assess the ability of organisms with limited movement and dispersal capabilities to track shifts associated with climate change, we evaluated reproductive and dispersal traits of freshwater mussels (Unionida), sessile invertebrates that require species‐specific fish for larval dispersal.LocationNorth American Atlantic Slope rivers.MethodsTo understand how unionid mussels may cope with and adapt to current and future warming trends, we identified mechanisms that facilitated their colonization of the northern Atlantic Slope river basins in North America after the Last Glacial Maximum. We compiled species occurrence and life history trait information for each of 55 species, and then selected life history traits for which ample data were available (larval brooding duration, host fish specificity, host infection strategy, and body size) and analysed whether the trait state for each was related to mussel distribution in Atlantic Slope rivers.ResultsBrooding duration (p < .01) and host fish specificity (p = .02) were significantly related to mussel species distribution. Long‐term brooders were more likely than short‐term brooders to colonize formerly glaciated rivers, as were host generalists compared to specialists. Body size and host infection strategy were not predictive of movement into formerly glaciated rivers (p > .10).Main conclusionsOur results are potentially applicable to many species for which life history traits have not been well‐documented, because reproductive and dispersal traits in unionid mussels typically follow phylogenetic relationships. These findings may help resource managers prioritize species according to climate change vulnerability and predict which species might become further imperilled with climate warming. Finally, we suggest that similar trait‐based decision support frameworks may be applicable for other movement limited taxa.

Comparative sequence analysis of the complete set of 40S ribosomal proteins in the Senegalese sole (Solea senegalensis Kaup) and Atlantic halibut (Hippoglossus hippoglossus L.) (Teleostei: Pleuronectiformes): phylogeny and tissue- and development-specific expression.

PubMed

Manchado, Manuel; Infante, Carlos; Asensio, Esther; Cañavate, Jose Pedro; Douglas, Susan E

2007-07-03

Ribosomal proteins (RPs) are key components of ribosomes, the cellular organelle responsible for protein biosynthesis in cells. Their levels can vary as a function of organism growth and development; however, some RPs have been associated with other cellular processes or extraribosomal functions. Their high representation in cDNA libraries has resulted in the increase of RP sequences available from different organisms and their proposal as appropriate molecular markers for phylogenetic analysis. The development of large-scale genomics of Senegalese sole (Solea senegalensis) and Atlantic halibut (Hippoglossus hippoglossus), two commercially important flatfish species, has made possible the identification and systematic analysis of the complete set of RP sequences for the small (40S) ribosome subunit. Amino acid sequence comparisons showed a high similarity both between these two flatfish species and with respect to other fish and human. EST analysis revealed the existence of two and four RPS27 genes in Senegalese sole and Atlantic halibut, respectively. Phylogenetic analysis clustered RPS27 in two separate clades with their fish and mammalian counterparts. Steady-state transcript levels for eight RPs (RPS2, RPS3a, RPS15, RPS27-1, RPS27-2, RPS27a, RPS28, and RPS29) in sole were quantitated during larval development and in tissues, using a real-time PCR approach. All eight RPs exhibited different expression patterns in tissues with the lowest levels in brain. On the contrary, RP transcripts increased co-ordinately after first larval feeding reducing progressively during the metamorphic process. The genomic resources and knowledge developed in this survey will provide new insights into the evolution of Pleuronectiformes. Expression data will contribute to a better understanding of RP functions in fish, especially the mechanisms that govern growth and development in larvae, with implications in aquaculture.

Gender specific reproductive strategies of an arctic key species (Boreogadus saida) and implications of climate change.

PubMed

Nahrgang, Jasmine; Varpe, Oystein; Korshunova, Ekaterina; Murzina, Svetlana; Hallanger, Ingeborg G; Vieweg, Ireen; Berge, Jørgen

2014-01-01

The Arctic climate is changing at an unprecedented rate. What consequences this may have on the Arctic marine ecosystem depends to a large degree on how its species will respond both directly to elevated temperatures and more indirectly through ecological interactions. But despite an alarming recent warming of the Arctic with accompanying sea ice loss, reports evaluating ecological impacts of climate change in the Arctic remain sparse. Here, based upon a large-scale field study, we present basic new knowledge regarding the life history traits for one of the most important species in the entire Arctic, the polar cod (Boreogadus saida). Furthermore, by comparing regions of contrasting climatic influence (domains), we present evidence as to how its growth and reproductive success is impaired in the warmer of the two domains. As the future Arctic is predicted to resemble today's Atlantic domains, we forecast changes in growth and life history characteristics of polar cod that will lead to alteration of its role as an Arctic keystone species. This will in turn affect community dynamics and energy transfer in the entire Arctic food chain.

Movements of Atlantic Sturgeon of the Gulf of Maine inside and outside the geographically defined Distinct Population Segment

USGS Publications Warehouse

Wippelhauser, Gail S.; Sulikowski, James; Zydlewski, Gayle B.; Altenritter, Megan; Kieffer, Micah; Kinnison, Michael T.

2017-01-01

Identification of potential critical habitat, seasonal distributions, and movements within and between river systems is important for protecting the Gulf of Maine (GOM) Distinct Population Segment of Atlantic Sturgeon. To accomplish these objectives, we captured Atlantic Sturgeon in four GOM rivers (Penobscot, Kennebec system, Saco, and Merrimack), and tagged 144 (83.3–217.4 cm TL) internally with uniquely coded acoustic transmitters. Tagged fish were detected between 2006 to 2014 by primary receiver arrays deployed in the four GOM rivers or opportunistically on a secondary group of receivers deployed within the GOM and along the continental shelf. Atlantic Sturgeon tagged in the four rivers were documented at three spawning areas in the Kennebec system in June and July, including one that became accessible in 1999 when the Edwards Dam was removed. After being tagged, the majority (74%) of Atlantic sturgeon were detected in the estuaries of the four GOM rivers, primarily from May through October. Tagged fish spent most of their time in saline water in the Saco River and Merrimack River, moved into brackish water in the Penobscot River, and were found in saline, brackish, and fresh water in the Kennebec system. Approximately 70% of the tagged fish were detected in GOM coastal waters, and aggregated in the Bay of Fundy (May–January), offshore of the Penobscot River (September-February and May), offshore of the Kennebec River (September–February), in Saco Bay and the Scarborough River (July–November), and along the eastern Massachusetts coast between Cape Ann and Cape Cod (April–February). Nine tagged Atlantic sturgeon (7%) left the GOM, three of which moved as far north as Halifax in Canada and six moved as far south as the James River in Virginia. Information from this study will be used to make recommendations to avoid, reduce or mitigate the impacts of in-water projects and on Atlantic sturgeon.

Extreme mitochondrial variation in the Atlantic gall crab Opecarcinus hypostegus (Decapoda: Cryptochiridae) reveals adaptive genetic divergence over Agaricia coral hosts

PubMed Central

van Tienderen, Kaj M.; van der Meij, Sancia E. T.

2017-01-01

The effectiveness of migration in marine species exhibiting a pelagic larval stage is determined by various factors, such as ocean currents, pelagic larval stage duration and active habitat selection. Direct measurement of larval movements is difficult and, consequently, factors determining the gene flow patterns remain poorly understood for many species. Patterns of gene flow play a key role in maintaining genetic homogeneity in a species by dampening the effects of local adaptation. Coral-dwelling gall crabs (Cryptochiridae) are obligate symbionts of stony corals (Scleractinia). Preliminary data showed high genetic diversity on the COI gene for 19 Opecarcinus hypostegus specimens collected off Curaçao. In this study, an additional 176 specimens were sequenced and used to characterize the population structure along the leeward side of Curaçao. Extremely high COI genetic variation was observed, with 146 polymorphic sites and 187 unique haplotypes. To determine the cause of this high genetic diversity, various gene flow scenarios (geographical distance along the coast, genetic partitioning over depth, and genetic differentiation by coral host) were examined. Adaptive genetic divergence across Agariciidae host species is suggested to be the main cause for the observed high intra-specific variance, hypothesised as early signs of speciation in O. hypostegus. PMID:28079106

The size, mass, and composition of plastic debris in the western North Atlantic Ocean.

PubMed

Morét-Ferguson, Skye; Law, Kara Lavender; Proskurowski, Giora; Murphy, Ellen K; Peacock, Emily E; Reddy, Christopher M

2010-10-01

This study reports the first inventory of physical properties of individual plastic debris in the North Atlantic. We analyzed 748 samples for size, mass, and material composition collected from surface net tows on 11 expeditions from Cape Cod, Massachusetts to the Caribbean Sea between 1991 and 2007. Particles were mostly fragments less than 10mm in size with nearly all lighter than 0.05 g. Material densities ranged from 0.808 to 1.24 g ml(-1), with about half between 0.97 and 1.04 g ml(-1), a range not typically found in virgin plastics. Elemental analysis suggests that samples in this density range are consistent with polypropylene and polyethylene whose densities have increased, likely due to biofouling. Pelagic densities varied considerably from that of beach plastic debris, suggesting that plastic particles are modified during their residence at sea. These analyses provide clues in understanding particle fate and potential debris sources, and address ecological implications of pelagic plastic debris. Copyright © 2010 Elsevier Ltd. All rights reserved.

Monitoring Ground-Water Quality in Coastal Ecosystems

USGS Publications Warehouse

Colman, John A.; Masterson, John P.

2007-01-01

INTRODUCTION The Cape Cod National Seashore (CACO) extends along more than 70 km of Atlantic Ocean open-beach coastline and includes three large saltwater bays - Wellfleet Harbor, Nauset Marsh, and Pleasant Bay (fig. 1). CACO encompasses about 18,000 ha of uplands, lakes, wetlands, and tidal lands (Godfrey and others, 1999) including most habitats typical of the sandy coast in National seashores and parks extending southward from Massachusetts to Florida. In 1995, CACO was selected by the National Park Service (NPS) as a prototype park typifying the Atlantic and Gulf Coast biogeographic region for long-term coastal ecosystem monitoring. The U.S. Geological Survey (USGS) is currently (2007) assisting the NPS in the development of protocols for a Long-Term Coastal Ecosystem Monitoring Program at the CACO in Massachusetts. The overall purpose of the monitoring program is to characterize both natural and human-induced change in the biological resources of the CACO, over a time scale of decades, in the context of a changing global ecosystem.

Measurement-based estimates of direct radiative effects of absorbing aerosols above clouds

NASA Astrophysics Data System (ADS)

Feng, Nan; Christopher, Sundar A.

2015-07-01

The elevated layers of absorbing smoke aerosols from western African (e.g., Gabon and Congo) biomass burning activities have been frequently observed above low-level stratocumulus clouds off the African coast, which presents an excellent natural laboratory for studying the effects of aerosols above clouds (AAC) on regional energy balance in tropical and subtropical environments. Using spatially and temporally collocated Moderate Resolution Imaging Spectroradiometer, Ozone Monitoring Instrument (OMI), and Clouds and the Earth's Radiant Energy System data sets, the top-of-atmosphere shortwave aerosol direct shortwave radiative effects (ARE) of absorbing aerosols above low-level water clouds in the southeast Atlantic Ocean was examined in this study. The regional averaged instantaneous ARE has been estimated to be 36.7 ± 20.5 Wm-2 (regional mean ± standard deviation) along with a mean positive OMI Aerosol Index at 1.3 in August 2006 based on multisensors measurements. The highest magnitude of instantaneous ARE can even reach 138.2 Wm-2. We assess that the 660 nm cloud optical depth (COD) values of 8-12 is the critical value above (below) which aerosol absorption (scattering) effect dominates and further produces positive (negative) ARE values. The results further show that ARE values are more sensitive to aerosols above lower COD values than cases for higher COD values. This is among the first studies to provide quantitative estimates of shortwave ARE due to AAC events from an observational perspective.

Long-term observation of aerosol-cloud relationships in the Mid-Atlantic of the United States

NASA Astrophysics Data System (ADS)

Li, S.; Joseph, E.; Min, Q.; Yin, B.

2014-07-01

Long-term ground-based observations (2006 to 2010) of aerosol and cloud properties derived from passive radiometric sensors deployed at an atmospheric measurement field station in the Baltimore-Washington corridor operated by Howard University were used to examine aerosol indirect effect on cloud optical depth (COD), liquid water path (LWP), cloud droplets effective radius (Re) and cloud droplets number concentration (Nd). A higher frequency of clouds with large COD (> 20) and small Re (< 7 m) was found during summer of 2006 and 2007 along with higher frequency of abundant aerosol loading. The five-year data are screened for summer months only and are separated into clean and polluted cases based on aerosol particulate matter with aerodynamic diameter ≤ 2.5 m (PM2.5) value. Evidence of aerosol indirect effect is found where for polluted cases the mean and median values of COD and Nd distributions were elevated while the mean and median values of Re were decreased. Further reinforcing this conclusion is the result that the mean and median values of LWP distributions did not show prominent difference between clean and polluted cases, this implies that differences between the two cases of influential factors on cloud properties were relatively controlled. Moreover aerosol indirect effects were found insignificant when LWP was small but significant when LWP was large through the analysis of sensitivity of Nd to LWP under different aerosol loading and the measurements of aerosol size distribution.

Long-term change in a behavioural trait: truncated spawning distribution and demography in Northeast Arctic cod

PubMed Central

Opdal, Anders Frugård; Jørgensen, Christian

2015-01-01

Harvesting may be a potent driver of demographic change and contemporary evolution, which both may have great impacts on animal populations. Research has focused on changes in phenotypic traits that are easily quantifiable and for which time series exist, such as size, age, sex, or gonad size, whereas potential changes in behavioural traits have been under-studied. Here, we analyse potential drivers of long-term changes in a behavioural trait for the Northeast Arctic stock of Atlantic cod Gadus morhua, namely choice of spawning location. For 104 years (1866–1969), commercial catches were recorded annually and reported by county along the Norwegian coast. During this time period, spawning ground distribution has fluctuated with a trend towards more northerly spawning. Spawning location is analysed against a suite of explanatory factors including climate, fishing pressure, density dependence, and demography. We find that demography (age or age at maturation) had the highest explanatory power for variation in spawning location, while climate had a limited effect below statistical significance. As to potential mechanisms, some effects of climate may act through demography, and explanatory variables for demography may also have absorbed direct evolutionary change in migration distance for which proxies were unavailable. Despite these caveats, we argue that fishing mortality, either through demographic or evolutionary change, has served as an effective driver for changing spawning locations in cod, and that additional explanatory factors related to climate add no significant information. PMID:25336028

Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod.

PubMed

Spies, Ingrid; Hauser, Lorenz; Jorde, Per Erik; Knutsen, Halvor; Punt, André E; Rogers, Lauren A; Stenseth, Nils Chr

2018-05-08

Genetic data are commonly used to estimate connectivity between putative populations, but translating them to demographic dispersal rates is complicated. Theoretical equations that infer a migration rate based on the genetic estimator F ST , such as Wright's equation, F ST ≈ 1/(4 N e m + 1), make assumptions that do not apply to most real populations. How complexities inherent to real populations affect migration was exemplified by Atlantic cod in the North Sea and Skagerrak and was examined within an age-structured model that incorporated genetic markers. Migration was determined under various scenarios by varying the number of simulated migrants until the mean simulated level of genetic differentiation matched a fixed level of genetic differentiation equal to empirical estimates. Parameters that decreased the N e / N t ratio (where N e is the effective and N t is the total population size), such as high fishing mortality and high fishing gear selectivity, increased the number of migrants required to achieve empirical levels of genetic differentiation. Higher maturity-at-age and lower selectivity increased N e / N t and decreased migration when genetic differentiation was fixed. Changes in natural mortality, fishing gear selectivity, and maturity-at-age within expected limits had a moderate effect on migration when genetic differentiation was held constant. Changes in population size had the greatest effect on the number of migrants to achieve fixed levels of F ST , particularly when genetic differentiation was low, F ST ≈ 10 -3 Highly variable migration patterns, compared with constant migration, resulted in higher variance in genetic differentiation and higher extreme values. Results are compared with and provide insight into the use of theoretical equations to estimate migration among real populations. Copyright © 2018 the Author(s). Published by PNAS.

Temperature Modulates the Effects of Ocean Acidification on Intestinal Ion Transport in Atlantic Cod, Gadus morhua

PubMed Central

Hu, Marian Y.; Michael, Katharina; Kreiss, Cornelia M.; Stumpp, Meike; Dupont, Sam; Tseng, Yung-Che; Lucassen, Magnus

2016-01-01

CO2-driven seawater acidification has been demonstrated to enhance intestinal bicarbonate secretion rates in teleosts, leading to an increased release of CaCO3 under simulated ocean acidification scenarios. In this study, we investigated if increasing CO2 levels stimulate the intestinal acid–base regulatory machinery of Atlantic cod (Gadus morhua) and whether temperatures at the upper limit of thermal tolerance stimulate or counteract ion regulatory capacities. Juvenile G. morhua were acclimated for 4 weeks to three CO2 levels (550, 1200, and 2200 μatm) covering present and near-future natural variability, at optimum (10°C) and summer maximum temperature (18°C), respectively. Immunohistochemical analyses revealed the subcellular localization of ion transporters, including Na+/K+-ATPase (NKA), Na+/H+-exchanger 3 (NHE3), Na+/HCO3− cotransporter (NBC1), pendrin-like Cl−/HCO3− exchanger (SLC26a6), V-type H+-ATPase subunit a (VHA), and Cl− channel 3 (CLC3) in epithelial cells of the anterior intestine. At 10°C, proteins and mRNA were generally up-regulated for most transporters in the intestinal epithelium after acclimation to higher CO2 levels. This supports recent findings demonstrating increased intestinal HCO3− secretion rates in response to CO2 induced seawater acidification. At 18°C, mRNA expression and protein concentrations of most ion transporters remained unchanged or were even decreased, suggesting thermal compensation. This response may be energetically favorable to retain blood HCO3− levels to stabilize pHe, but may negatively affect intestinal salt and water resorption of marine teleosts in future oceans. PMID:27313538

Temperature Modulates the Effects of Ocean Acidification on Intestinal Ion Transport in Atlantic Cod, Gadus morhua.

PubMed

Hu, Marian Y; Michael, Katharina; Kreiss, Cornelia M; Stumpp, Meike; Dupont, Sam; Tseng, Yung-Che; Lucassen, Magnus

2016-01-01

CO2-driven seawater acidification has been demonstrated to enhance intestinal bicarbonate secretion rates in teleosts, leading to an increased release of CaCO3 under simulated ocean acidification scenarios. In this study, we investigated if increasing CO2 levels stimulate the intestinal acid-base regulatory machinery of Atlantic cod (Gadus morhua) and whether temperatures at the upper limit of thermal tolerance stimulate or counteract ion regulatory capacities. Juvenile G. morhua were acclimated for 4 weeks to three CO2 levels (550, 1200, and 2200 μatm) covering present and near-future natural variability, at optimum (10°C) and summer maximum temperature (18°C), respectively. Immunohistochemical analyses revealed the subcellular localization of ion transporters, including Na(+)/K(+)-ATPase (NKA), Na(+)/H(+)-exchanger 3 (NHE3), Na(+)/[Formula: see text] cotransporter (NBC1), pendrin-like Cl(-)/[Formula: see text] exchanger (SLC26a6), V-type H(+)-ATPase subunit a (VHA), and Cl(-) channel 3 (CLC3) in epithelial cells of the anterior intestine. At 10°C, proteins and mRNA were generally up-regulated for most transporters in the intestinal epithelium after acclimation to higher CO2 levels. This supports recent findings demonstrating increased intestinal [Formula: see text] secretion rates in response to CO2 induced seawater acidification. At 18°C, mRNA expression and protein concentrations of most ion transporters remained unchanged or were even decreased, suggesting thermal compensation. This response may be energetically favorable to retain blood [Formula: see text] levels to stabilize pHe, but may negatively affect intestinal salt and water resorption of marine teleosts in future oceans.

It is the economy, stupid! Projecting the fate of fish populations using ecological-economic modeling.

PubMed

Quaas, Martin F; Reusch, Thorsten B H; Schmidt, Jörn O; Tahvonen, Olli; Voss, Rudi

2016-01-01

Four marine fish species are among the most important on the world market: cod, salmon, tuna, and sea bass. While the supply of North American and European markets for two of these species - Atlantic salmon and European sea bass - mainly comes from fish farming, Atlantic cod and tunas are mainly caught from wild stocks. We address the question what will be the status of these wild stocks in the midterm future, in the year 2048, to be specific. Whereas the effects of climate change and ecological driving forces on fish stocks have already gained much attention, our prime interest is in studying the effects of changing economic drivers, as well as the impact of variable management effectiveness. Using a process-based ecological-economic multispecies optimization model, we assess the future stock status under different scenarios of change. We simulate (i) technological progress in fishing, (ii) increasing demand for fish, and (iii) increasing supply of farmed fish, as well as the interplay of these driving forces under different scenarios of (limited) fishery management effectiveness. We find that economic change has a substantial effect on fish populations. Increasing aquaculture production can dampen the fishing pressure on wild stocks, but this effect is likely to be overwhelmed by increasing demand and technological progress, both increasing fishing pressure. The only solution to avoid collapse of the majority of stocks is institutional change to improve management effectiveness significantly above the current state. We conclude that full recognition of economic drivers of change will be needed to successfully develop an integrated ecosystem management and to sustain the wild fish stocks until 2048 and beyond. © 2015 John Wiley & Sons Ltd.

Optimized conditions for primary culture of pituitary cells from the Atlantic cod (Gadus morhua). The importance of osmolality, pCO₂, and pH.

PubMed

Hodne, Kjetil; von Krogh, Kristine; Weltzien, Finn-Arne; Sand, Olav; Haug, Trude M

2012-09-01

Protocols for primary cultures of teleost cells are commonly only moderately adjusted from similar protocols for mammalian cells, the main adjustment often being of temperature. Because aquatic habitats are in general colder than mammalian body temperatures and teleosts have gills in direct contact with water, pH and buffer capacity of blood and extracellular fluid are different in fish and mammals. Plasma osmolality is generally higher in marine teleosts than in mammals. Using Atlantic cod (Gadus morhua) as a model, we have optimized these physiological parameters to maintain primary pituitary cells in culture for an extended period without loosing key properties. L-15 medium with adjusted osmolality, adapted to low pCO(2) (3.8mm Hg) and temperature (12°C), and with pH 7.85, maintained the cells in a physiologically sounder state than traditional culture medium, significantly improving cell viability compared to the initial protocol. In the optimized culture medium, resting membrane potential and response to releasing hormone were stable for at least two weeks, and the proportion of cells firing action potentials during spawning season was about seven times higher than in the original culture medium. The cells were moderately more viable when the modified medium was supplemented with newborn calf serum or artificial serum substitute. Compared to serum-free L-15 medium, expression of key genes (lhb, fshb, and gnrhr2a) was better maintained in medium containing SSR, whereas NCS tended to decrease the expression level. Although serum-free medium is adequate for many applications, serum supplement may be preferable for experiments dependent on membrane integrity. Copyright © 2012 Elsevier Inc. All rights reserved.

Description of Cyclocephala distincta Burmeister (Coleoptera: Scarabaeidae: Dynastinae: Cyclocephalini) immatures and identification key for third instars of some Cyclocephala species.

PubMed

Souza, Thamyrys Bezerra De; Maia, Artur Campos Dália; Albuquerque, Cleide Maria Ribeiro De; Iannuzzi, Luciana

2014-10-08

The larval instars and pupa of Cyclocephala distincta Burmeister (Coleoptera: Scarabaeidae: Dynastinae: Cyclocephalini) are described and compared to those of other known congenerics. Adult C. distincta, specialized flower visitors of Neotropical palms (Arecaceae), were collected in an area of native Atlantic Forest cover in the northeastern coast of Brazil and reared in captivity. The larvae of C. distincta diff---er from those of the other congenerics because of a distinctive pattern and arrangement of the setae on the raster.

Behavioral and physiological responses to prey match-mismatch in larval herring

NASA Astrophysics Data System (ADS)

Illing, Björn; Moyano, Marta; Berg, Julia; Hufnagl, Marc; Peck, Myron A.

2018-02-01

The year-class success of Atlantic herring (Clupea harengus) spawning in the autumn/winter in the North Sea (NSAS stock) and in the spring in the western Baltic Sea (WBSS) appears driven by prey match-mismatch dynamics affecting the survival of larvae during the first weeks of life. To better understand and model the consequences of prey match-mismatch from an individual-based perspective, we measured aspects of the physiology and behavior of NSAS and WBSS herring larvae foraging in markedly different prey concentrations. When matched with prey (ad libitum concentrations of the copepod Acartia tonsa) larval growth, swimming activity, nutritional condition and metabolic rates were relatively high. When prey was absent (mismatch), swimming and feeding behavior rapidly declined within 2 and 4 days, for WBSS and NSAS larvae, respectively, concomitant with reductions in nutritional (RNA-DNA ratio) and somatic (weight-at-length) condition. After several days without prey, respiration measurements made on WBSS larvae suggested metabolic down-regulation (8-34%). An individual-based model depicting the time course of these Behavioral and physiological responses suggested that 25-mm larvae experiencing a mismatch would survive 25-33% (10, 7 °C) longer than 12-mm larvae. Warmer temperatures exacerbate starvation-induced decrements in performance. Without Behavioral and metabolic adjustments, survival of 25-mm larvae would be reduced from 8 to 6 days at 7 °C. Our findings highlight how adaptive Behavioral and physiological responses are tightly linked to prey match-mismatch dynamics in larval herring and how these responses can be included in models to better explore how bottom-up processes regulate larval fish growth and survival.

An inexpensive intervention for the control of larval Aedes aegypti assessed by an improved method of surveillance and analysis.

PubMed

Romero-Vivas, Claudia M E; Wheeler, Jeremy G; Falconar, Andrew K I

2002-03-01

A sampling method coupled with statistical calibration factors was developed to accurately assess the numbers of larvae and pupae of Aedes aegypti in large water-storage containers of variable capacities and water levels. Aedes aegypti productivity in different types of breeding sites found in an urban study area in central Colombia was assessed and compared. In this study, water-storage tanks and drums were found to comprise 79% of the containers positive for larval Ae. aegypti, which contributed to 93 and 92% of the total production of populations of 4th-stage larvae and pupae, respectively. These main breeding sites of Ae. aegypti were found at an indoor to outdoor ratio of 2.4:1 and no correlation was found between temporal fluctuation of populations of larval Ae. aegypti and monthly rainfall. Netted lids that used inexpensive local materials were designed to prevent oviposition by Ae. aegypti. During a 6-month trial period, 56% of inspected containers had netted lids correctly in place. Of these, 78% had no mosquito larvae. Because only 37% of uncovered containers were free of mosquito larvae, a significant difference was demonstrated when these inexpensive mechanical barriers were used (chi2 = 138.7; P < 0.001). These netted lids and the improved methods described to assess the productivity of larval and pupal Ae. aegypti in this study are now being used in combination with other strategies to assess and control these populations of dengue virus vectors in the main port city on the Atlantic Coast of Colombia.

Fish kairomones induce spine elongation and reduce predation in marine crab larvae.

PubMed

Charpentier, Corie L; Wright, Alexander J; Cohen, Jonathan H

2017-08-01

Specialized defense strategies are induced in zooplankton upon detection of predator chemical cues or kairomones. These defenses are well-described for freshwater zooplankters, with morphological defenses being particularly striking, but few studies have reported kairomone-induced morphological defenses in marine zooplankton. Here, we compare morphological responses to kairomones in the larvae of two marine crab species, estuarine mud crabs (Rhithropanopeus harrisii) and Asian shore crabs (Hemigrapsus sanguineus). When reared in the presence of fish kairomones, spine length increased by 2-3% in larval R. harrisii, while no morphological changes were identified in H. sanguineus. In subsequent feeding assays with a co-occurring fish predator (Atlantic silversides, Menidia menidia), consumption of R. harrisii was lower on larvae that had been reared with kairomones. In addition, we found that broods with smaller larvae are more likely to exhibit increases in spine length after kairomone exposure. Hence, the observed morphological response is likely influenced by larval size. © 2017 by the Ecological Society of America.

Anisakid nematodes in beaked redfish (Sebastes mentella) from three fishing grounds in the North Atlantic, with special notes on distribution in the fish musculature.

PubMed

Klapper, Regina; Kuhn, Thomas; Münster, Julian; Levsen, Arne; Karl, Horst; Klimpel, Sven

2015-01-15

Parasitic anisakid nematodes commonly occur in the musculature and visceral organs of many fish species from the North Atlantic. In this respect, the presence of the third stage larvae of Anisakis spp. in the fish musculature may pose a potential consumer hazard due to the parasite's ability to cause anisakidosis. Thus, knowledge on the occurrence and distribution of these potentially zoonotic parasites in the commercially important North Atlantic fish species is crucial in order to evaluate and consequently prevent human infections. In the present study, 300 Sebastes mentella from three North Atlantic fishing grounds (Northern North Sea: Tampen; Barents Sea: off Bear Island; Irminger Sea: off SE Greenland) were examined for anisakid nematodes, with emphasis on occurrence and distribution in the musculature. Overall larval prevalence and mean intensity were significantly higher in redfish from Tampen (94%; 13.5±20.0) and Bear Island (94%; 14.5±19.4) than in fish from SE Greenland (75%; 6.0±5.8; p<0.01). The same trend was observed for larval infection in the musculature showing prevalence and mean intensities of 79%, 73%, and 55%, and 5.9±6.6, 5.8±6.5, and 3.2±2.4, in the musculature of redfish from Tampen, Bear Island, and Greenland, respectively. Conventional microscopy and rDNA ITS-gene sequencing of various subsamples of muscle-dwelling nematode larvae of redfish from every catching locality revealed the presence of two anisakid species; Anisakis simplex sensu stricto and the non-zoonotic Hysterothylacium aduncum. Since the larvae of H. aduncum typically occur in or on the viscera of fish, our findings of two specimens in the belly flaps of redfish were unusual. Additionally, more than 92% of the muscle-dwelling larvae occurred in the belly flaps, i.e. the hypaxial part of the musculature surrounding the visceral organs on either fish side. Thus, trimming the fillets of beaked redfish by removal of most of the belly flaps would significantly reduce the probability of anisakid nematode larvae to be present in the final product. Copyright © 2014 Elsevier B.V. All rights reserved.

Variability of sea-surface temperature in the South Atlantic bight as observed from satellite: Implications for offshore-spawning fish

NASA Astrophysics Data System (ADS)

Stegmann, P. M.; Yoder, J. A.

1996-06-01

We examined full-resolution (1 × 1 km) satellite images of sea-surface temperature (SST) over five consecutive years (1981-1986) covering the Atlantic menhaden ( Brevoortia tyrannus) recruitment period (November-April) in the SABRE (South Atlantic Bight recruitment experiment) study site. The results of our image time series indicated two processes which could be possible mechanisms for the onshore transport of fish larvae into coastal regions. One is the influx of warm Gulf Stream water that oscillates in and out of the Carolina Bays. These oscillations occurred throughout the study period over distances of 20-40 km and on time-scales as short as two days. The other is a tongue of relatively cold water located adjacent to the Virginia coast that moved southward and penetrated into Onslow Bay between January and March. Previous studies showed that Atlantic menhaden preferentially spawn in 18-22°C waters on the outer shelf. On the assumption that the 18°C isotherm (18DI) indicates where high larval abundance may occur, we used AVHRR-SST imagery to track the onshore-offshore movement of the 18DI along a transect extending onshore-offshore in Onslow Bay. Owing to seasonal warming and cooling, this isotherm was always found closest to the coast in early November, reached maximum offshore displacement by January/March, and then moved onshore again in April/May. Our results also showed that the position of this isotherm can move offshore or onshore in a matter of a few days. An important influence and possibly the major cause of the higher frequency displacements of the 18DI are Gulf Stream meanders or filaments moving through Onslow Bay. Our estimates of onshore isotherm speeds as determined from satellite SST ranged from 2 to 25 cm s -1 and are within the same order as those calculated by physical models or larval age determinations. If the onshore pulses of warm Gulf Stream water are indeed a mode by which menhaden larvae are transported cross-shelf, then the use of satellite-based observations to determine their frequency and onshore extent, as done in the present study, is a useful tool to study variations in fish recruitment.

Determination of volatile bases in seafood using the ammonia ion selective electrode: collaborative study.

PubMed

Ellis, P C; Pivarnik, L F; Thiam, M; Ellis, P C; Pivarnik, L F; Thiam, M

2000-01-01

Nine collaborating laboratories tested a combination of 23 seafood samples for volatile bases using an ammonia ion selective electrode. Results were reported as mg NH3/100 g fish, but the method reflected levels of both ammonia and trimethylamine, which permeated the ammonia membrane. The 23 samples were broken down into 8 blind duplicate pairs, 2 Youden matched pairs, and 3 single samples covering fresh to spoiled product ranging from 8 to 82 mg NH3/100 g. Seven species were evaluated: Atlantic cod, squid, Atlantic halibut, gray sole, monkfish, dogfish, and Atlantic mackerel. The ammonia electrode assay was performed on an aqueous homogenate consisting of 95 mL distilled water and 5.0 g sample tissue. Alkaline ion strength adjusting solution (2 mL) was added to the homogenate to liberate ammonia that was sensed by the ion specific electrode and measured on a precalibrated portable meter. Repeatability standard deviations (RSDr) ranged from 4.2 to 17%; reproducibility standard deviations (RSDR) ranged from 8.8 to 21%. A standard ammonium chloride solution was provided to all laboratories to spike 3 different samples at 10 mg NH3/100 g. Recoveries of added ammonia as ammonium chloride for fresh, borderline, and spoiled samples were 88.6, 107, and 128%, respectively.

Unravelling the Gordian knot! Key processes impacting overwintering larval survival and growth: A North Sea herring case study

NASA Astrophysics Data System (ADS)

Hufnagl, Marc; Peck, Myron A.; Nash, Richard D. M.; Dickey-Collas, Mark

2015-11-01

Unraveling the key processes affecting marine fish recruitment will ultimately require a combination of field, laboratory and modelling studies. We combined analyzes of long-term (30-year) field data on larval fish abundance, distribution and length, and biophysical model simulations of different levels of complexity to identify processes impacting the survival and growth of autumn- and winter-spawned Atlantic herring (Clupea harengus) larvae. Field survey data revealed interannual changes in intensity of utilization of the five major spawning grounds (Orkney/Shetland, Buchan, Banks north, Banks south, and Downs) as well as spatio-temporal variability in the length and abundance of overwintered larvae. The mean length of larvae captured in post-winter surveys was negatively correlated to the proportion of larvae from the southern-most (Downs) winter-spawning component. Furthermore, the mean length of larvae originating from all spawning components has decreased since 1990 suggesting ecosystem-wide changes impacting larval growth potential, most likely due to changes in prey fields. A simple biophysical model assuming temperature-dependent growth and constant mortality underestimated larval growth rates suggesting that larval mortality rates steeply declined with increasing size and/or age during winter as no match with field data could be obtained. In contrast better agreement was found between observed and modelled post-winter abundance for larvae originating from four spawning components when a more complex, physiological-based foraging and growth model was employed using a suite of potential prey field and size-based mortality scenarios. Nonetheless, agreement between field and model-derived estimates was poor for larvae originating from the winter-spawned Downs component. In North Sea herring, the dominant processes impacting larval growth and survival appear to have shifted in time and space highlighting how environmental forcing, ecosystem state and other factors can form a Gordian knot of marine fish recruitment processes. We highlight gaps in process knowledge and recommend specific field, laboratory and modelling studies which, in our opinion, are most likely to unravel the dominant processes and advance predictive capacity of the environmental regulation of recruitment in autumn and winter-spawned fishes in temperate areas such as herring in the North Sea.

Hunter-Gatherer Responses to the 8.2 Ka Cold Event in the Fennoscandian Arctic

NASA Astrophysics Data System (ADS)

Manninen, M. A.

2014-12-01

Because of a marked influence of warm Atlantic water to primary productivity in the Barents Sea, the marine ecosystem in northernmost Fennoscandia is sensitive to disturbances in the North Atlantic oceanographic system. The 8.2 ka climate event, according to current knowledge, was triggered by a disturbance in the North Atlantic Thermohaline circulation. This suggests concurrent and strong climatic and marine cooling in the area covering the northernmost parts of Finland, Norway, and Sweden during the climate event. In this area ecosystem response to the 8.2 ka event can therefore be expected to have been prominent, which in turn should be reflected in the contemporary human socio-economic systems. A study that employs lithic technological, statistical, and spatial analyses of Late Mesolithic (ca. 8450-6850 cal BP) lithic technology and settlement configuration in the area indicates that lithic technology and settlement patterns were reorganised following the climatic and marine cooling. The studied groups changed their lithic technology as a result of developments that led to increased use of terrestrial resources and an accompanying long-distance coast/inland residential mobility pattern. Besides lithic technological changes and long-distance mobility on land, decreased marine productivity probably also explains the disappearance of semi-subterranean houses from the coast at ca. 8200 cal BP, while their reappearance after ca. 7500 cal BP can be linked to a increased influx of warm salty water into the Barents Sea. The results suggest that in the past a long period of decreased influx of Atlantic water into the Barents Sea has had disastrous consequences for the marine ecosystem. At present the Barents Sea fisheries have notable economic importance and produce, for example, over 90% of the Norwegian Atlantic cod (Gadus morhua) catch.

Environmental and biological characteristics of Atlantic bluefin tuna and albacore spawning habitats based on their egg distributions

NASA Astrophysics Data System (ADS)

Reglero, Patricia; Santos, Maria; Balbín, Rosa; Laíz-Carrión, Raul; Alvarez-Berastegui, Diego; Ciannelli, Lorenzo; Jiménez, Elisa; Alemany, Francisco

2017-06-01

Tuna spawning habitats are traditionally characterized using data sets of larvae or gonads from mature adults and concurrent environmental variables. Data on egg distributions have never previously been used since molecular analyses are mandatory to identify tuna eggs to species level. However, in this study we use molecularly derived egg distribution data, in addition to larval data, to characterize hydrographic and biological drivers of the spatial distribution of eggs and larvae of bluefin Thunnus thynnus and albacore tuna Thunnus alalunga in the Balearic Sea, a main spawning area of these species in the Mediterranean. The effects of the hydrography, characterized by salinity, temperature and geostrophic velocity, on the spatial distributions of the eggs and larvae are investigated. Three biological variables are used to describe the productivity in the area: chlorophyll a in the mixed layer, chlorophyll a in the deep chlorophyll maximum and mesozooplankton biomass in the mixed layer. Our results point to the importance of salinity fronts and temperatures above a minimum threshold in shaping the egg and larval distribution of both species. The spatial distribution of the biotic variables was very scattered, and they did not emerge as significant variables in the presence-absence models. However, they became significant when modeling egg and larval abundances. The lack of correlation between the three biotic variables challenges the use of chlorophyll a to describe trophic scenarios for the larvae and suggests that the spatial distribution of resources is not persistent in time. The different patterns in relation to biotic variables across species and stages found in this and other studies indicate a still elusive understanding of the link between trophic levels involving tuna early larval stages. Our ability to improve short-term forecasting and long-term predictions of climate effects on the egg and larval distributions is discussed based on the consistency of the environmentally driven spatial patterns for the two species.

Discovery of a spawning ground reveals diverse migration strategies in Atlantic bluefin tuna (Thunnus thynnus).

PubMed

Richardson, David E; Marancik, Katrin E; Guyon, Jeffrey R; Lutcavage, Molly E; Galuardi, Benjamin; Lam, Chi Hin; Walsh, Harvey J; Wildes, Sharon; Yates, Douglas A; Hare, Jonathan A

2016-03-22

Atlantic bluefin tuna are a symbol of both the conflict between preservationist and utilitarian views of top ocean predators, and the struggle to reach international consensus on the management of migratory species. Currently, Atlantic bluefin tuna are managed as an early-maturing eastern stock, which spawns in the Mediterranean Sea, and a late-maturing western stock, which spawns in the Gulf of Mexico. However, electronic tagging studies show that many bluefin tuna, assumed to be of a mature size, do not visit either spawning ground during the spawning season. Whether these fish are spawning in an alternate location, skip-spawning, or not spawning until an older age affects how vulnerable this species is to anthropogenic stressors including exploitation. We use larval collections to demonstrate a bluefin tuna spawning ground in the Slope Sea, between the Gulf Stream and northeast United States continental shelf. We contend that western Atlantic bluefin tuna have a differential spawning migration, with larger individuals spawning in the Gulf of Mexico, and smaller individuals spawning in the Slope Sea. The current life history model, which assumes only Gulf of Mexico spawning, overestimates age at maturity for the western stock. Furthermore, individual tuna occupy both the Slope Sea and Mediterranean Sea in separate years, contrary to the prevailing view that individuals exhibit complete spawning-site fidelity. Overall, this complexity of spawning migrations questions whether there is complete independence in the dynamics of eastern and western Atlantic bluefin tuna and leads to lower estimates of the vulnerability of this species to exploitation and other anthropogenic stressors.

Discovery of a spawning ground reveals diverse migration strategies in Atlantic bluefin tuna (Thunnus thynnus)

PubMed Central

Richardson, David E.; Marancik, Katrin E.; Guyon, Jeffrey R.; Lutcavage, Molly E.; Galuardi, Benjamin; Lam, Chi Hin; Walsh, Harvey J.; Wildes, Sharon; Yates, Douglas A.; Hare, Jonathan A.

2016-01-01

Atlantic bluefin tuna are a symbol of both the conflict between preservationist and utilitarian views of top ocean predators, and the struggle to reach international consensus on the management of migratory species. Currently, Atlantic bluefin tuna are managed as an early-maturing eastern stock, which spawns in the Mediterranean Sea, and a late-maturing western stock, which spawns in the Gulf of Mexico. However, electronic tagging studies show that many bluefin tuna, assumed to be of a mature size, do not visit either spawning ground during the spawning season. Whether these fish are spawning in an alternate location, skip-spawning, or not spawning until an older age affects how vulnerable this species is to anthropogenic stressors including exploitation. We use larval collections to demonstrate a bluefin tuna spawning ground in the Slope Sea, between the Gulf Stream and northeast United States continental shelf. We contend that western Atlantic bluefin tuna have a differential spawning migration, with larger individuals spawning in the Gulf of Mexico, and smaller individuals spawning in the Slope Sea. The current life history model, which assumes only Gulf of Mexico spawning, overestimates age at maturity for the western stock. Furthermore, individual tuna occupy both the Slope Sea and Mediterranean Sea in separate years, contrary to the prevailing view that individuals exhibit complete spawning-site fidelity. Overall, this complexity of spawning migrations questions whether there is complete independence in the dynamics of eastern and western Atlantic bluefin tuna and leads to lower estimates of the vulnerability of this species to exploitation and other anthropogenic stressors. PMID:26951668

Structural and biophysical analysis of interactions between cod and human uracil-DNA N-glycosylase (UNG) and UNG inhibitor (Ugi)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Assefa, Netsanet Gizaw; Niiranen, Laila; University of Turku, FIN-20014 Turku

2014-08-01

A structural and biophysical study of the interactions between cod and human uracil-DNA N-glycosylase (UNG) and their inhibitor Ugi is presented. The stronger interaction between cod UNG and Ugi can be explained by a greater positive electrostatic surface potential. Uracil-DNA N-glycosylase from Atlantic cod (cUNG) shows cold-adapted features such as high catalytic efficiency, a low temperature optimum for activity and reduced thermal stability compared with its mesophilic homologue human UNG (hUNG). In order to understand the role of the enzyme–substrate interaction related to the cold-adapted properties, the structure of cUNG in complex with a bacteriophage encoded natural UNG inhibitor (Ugi)more » has been determined. The interaction has also been analyzed by isothermal titration calorimetry (ITC). The crystal structure of cUNG–Ugi was determined to a resolution of 1.9 Å with eight complexes in the asymmetric unit related through noncrystallographic symmetry. A comparison of the cUNG–Ugi complex with previously determined structures of UNG–Ugi shows that they are very similar, and confirmed the nucleotide-mimicking properties of Ugi. Biophysically, the interaction between cUNG and Ugi is very strong and shows a binding constant (K{sub b}) which is one order of magnitude larger than that for hUNG–Ugi. The binding of both cUNG and hUNG to Ugi was shown to be favoured by both enthalpic and entropic forces; however, the binding of cUNG to Ugi is mainly dominated by enthalpy, while the entropic term is dominant for hUNG. The observed differences in the binding properties may be explained by an overall greater positive electrostatic surface potential in the protein–Ugi interface of cUNG and the slightly more hydrophobic surface of hUNG.« less

The Two-Column Aerosol Project: Phase I - Overview and Impact of Elevated Aerosol Layers on Aerosol Optical Depth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berg, Larry K.; Fast, Jerome D.; Barnard, James C.

2016-01-08

The Two-Column Aerosol Project (TCAP), which was conducted from June 2012 through June 2013, was a unique field study that was designed to provide a comprehensive data set that can be used to investigate a number of important climate science questions, including those related to aerosol mixing state and aerosol radiative forcing. The study was designed to sample the atmosphere at a number of altitudes, from near the surface to as high as 8 km, within two atmospheric columns; one located near the coast of North America (over Cape Cod, MA) and a second over the Atlantic Ocean several hundredmore » kilometers from the coast. TCAP included the yearlong deployment of the U.S. Department of Energy’s (DOE) Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) that was located at the base of the Cape Cod column, as well as summer and winter aircraft intensive observation periods of the ARM Aerial Facility. One important finding from TCAP is the relatively common occurrence (on four of six nearly cloud-free flights) of elevated aerosol layers in both the Cape Cod and maritime columns that were detected using the nadir pointing second-generation NASA high-spectral resolution lidar (HSRL-2). These layers contributed up to 60% of the total aerosol optical depth (AOD) observed in the column. Many of these layers were also intercepted by the aircraft configured for in situ sampling, and the aerosol in the layers was found to have increased amounts of biomass burning aerosol and nitrate compared to the aerosol found near the surface.« less

A comparative study of quality and safety of Atlantic cod (Gadus morhua) fillets during cold storage, as affected by different thawing methods of pre‐rigor frozen headed and gutted fish

PubMed Central

Jónsson, Ásbjörn; Backi, Christoph Josef; Lunestad, Bjørn Tore; Karlsdóttir, Magnea G

2017-01-01

Abstract BACKGROUND The catch of marine whitefish is typically seasonal, whereas the land‐based processing industry has a need for all‐year stable supply of raw materials. This challenge can be met by applying fish frozen at sea. When using frozen fish, the methods employed for thawing may influence the safety and quality of the final product. This study aimed to investigate the applicability of novel thawing strategies in order to provide an all‐year supply of high‐quality and safe cod products. RESULTS Comparative investigations of quality and safety factors after thawing in water, with and without air circulation, and contact thawing were performed. The parameters included water‐holding capacity, thawing loss, drip loss, cooking yield, sensory evaluation and microbiological analyses (including total volatile bases nitrogen). Water thawing with air circulation provided faster thawing than water thawing without air circulation and contact thawing. For all three methods, the quality of the thawed fish was acceptable and the shelf life of the fillets during chilled storage was between 10 and 14 days post‐filleting. CONCLUSION The results show that controlled freezing of cod, followed by appropriate thawing, may provide the processing industry with an all‐year delivery of raw materials, without compromising quality and safety of the final product. © 2017 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. PMID:28862323

Chemical quality of ground water on Cape Cod, Massachusetts

USGS Publications Warehouse

Frimpter, M.H.; Gay, F.B.

1979-01-01

Cape Cod is a 440 square mile hook-shaped peninsula which extends 40 miles into the Atlantic. Freshwater in Pleistocene sand and gravel deposits is the source of supply for nearly 100 municipal and thousands of private domestic wells. Most ground water on Cape Cod is of good chemical quality for drinking and other uses. It is characteristically low in dissolved solids and is soft. In 90 percent of the samples analyzed, dissolved solids were less than 100 mg/l (milligrams per liter) and pH was less than 7.0. Highway deicing salt, sea-water flooding due to storms , and saltwater intrusion due to ground-water withdrawal are sources of sodium chloride contamination. Chloride concentrations have increased from 20 to 140 mg/l, owing to saltwater intrusion at Provincetown 's wells in Truro. In Yarmouth, contaminated ground water near a salt-storage area contained as much as 1,800 mg/l chloride. Heavy metals, insecticides, and herbicides were not found at concentrations above the U.S. Environmental Protection Agency 's recommended limits for public drinking-water supplies, but iron and manganese in some samples exceeded those limits. Ninety percent of 84 samples analyzed for nitrate reported as nitrogen contained less than 1.3 mg/l and 80 percent contained 0.5 mg/l or less of nitrate as nitrogen. Water containing nitrogen in excess of 0.5 mg/l has probably been affected by municipal or domestic sewage or fertilizer, and water with less than this amount may have been affected by them. (Woodard-USGS)

Long-term change in a behavioural trait: truncated spawning distribution and demography in Northeast Arctic cod.

PubMed

Opdal, Anders Frugård; Jørgensen, Christian

2015-04-01

Harvesting may be a potent driver of demographic change and contemporary evolution, which both may have great impacts on animal populations. Research has focused on changes in phenotypic traits that are easily quantifiable and for which time series exist, such as size, age, sex, or gonad size, whereas potential changes in behavioural traits have been under-studied. Here, we analyse potential drivers of long-term changes in a behavioural trait for the Northeast Arctic stock of Atlantic cod Gadus morhua, namely choice of spawning location. For 104 years (1866-1969), commercial catches were recorded annually and reported by county along the Norwegian coast. During this time period, spawning ground distribution has fluctuated with a trend towards more northerly spawning. Spawning location is analysed against a suite of explanatory factors including climate, fishing pressure, density dependence, and demography. We find that demography (age or age at maturation) had the highest explanatory power for variation in spawning location, while climate had a limited effect below statistical significance. As to potential mechanisms, some effects of climate may act through demography, and explanatory variables for demography may also have absorbed direct evolutionary change in migration distance for which proxies were unavailable. Despite these caveats, we argue that fishing mortality, either through demographic or evolutionary change, has served as an effective driver for changing spawning locations in cod, and that additional explanatory factors related to climate add no significant information. © 2014 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

The Two-Column Aerosol Project: Phase I - Overview and Impact of Elevated Aerosol Layers on Aerosol Optical Depth

NASA Technical Reports Server (NTRS)

Berg, Larry K.; Fast, Jerome D.; Barnard, James C.; Burton, Sharon P.; Cairns, Brian; Chand, Duli; Comstock, Jennifer M.; Dunagan, Stephen; Ferrare, Richard A.; Flynn, Connor J.;

The Two-Column Aerosol Project: Phase I—Overview and impact of elevated aerosol layers on aerosol optical depth

NASA Astrophysics Data System (ADS)

Berg, Larry K.; Fast, Jerome D.; Barnard, James C.; Burton, Sharon P.; Cairns, Brian; Chand, Duli; Comstock, Jennifer M.; Dunagan, Stephen; Ferrare, Richard A.; Flynn, Connor J.; Hair, Johnathan W.; Hostetler, Chris A.; Hubbe, John; Jefferson, Anne; Johnson, Roy; Kassianov, Evgueni I.; Kluzek, Celine D.; Kollias, Pavlos; Lamer, Katia; Lantz, Kathleen; Mei, Fan; Miller, Mark A.; Michalsky, Joseph; Ortega, Ivan; Pekour, Mikhail; Rogers, Ray R.; Russell, Philip B.; Redemann, Jens; Sedlacek, Arthur J.; Segal-Rosenheimer, Michal; Schmid, Beat; Shilling, John E.; Shinozuka, Yohei; Springston, Stephen R.; Tomlinson, Jason M.; Tyrrell, Megan; Wilson, Jacqueline M.; Volkamer, Rainer; Zelenyuk, Alla; Berkowitz, Carl M.

2016-01-01

The Two-Column Aerosol Project (TCAP), conducted from June 2012 through June 2013, was a unique study designed to provide a comprehensive data set that can be used to investigate a number of important climate science questions, including those related to aerosol mixing state and aerosol radiative forcing. The study was designed to sample the atmosphere between and within two atmospheric columns; one fixed near the coast of North America (over Cape Cod, MA) and a second moveable column over the Atlantic Ocean several hundred kilometers from the coast. The U.S. Department of Energy's (DOE) Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) was deployed at the base of the Cape Cod column, and the ARM Aerial Facility was utilized for the summer and winter intensive observation periods. One important finding from TCAP is that four of six nearly cloud-free flight days had aerosol layers aloft in both the Cape Cod and maritime columns that were detected using the nadir pointing second-generation NASA high-spectral resolution lidar (HSRL-2). These layers contributed up to 60% of the total observed aerosol optical depth (AOD). Many of these layers were also intercepted by the aircraft configured for in situ sampling, and the aerosol in the layers was found to have increased amounts of biomass burning material and nitrate compared to aerosol found near the surface. In addition, while there was a great deal of spatial and day-to-day variability in the aerosol chemical composition and optical properties, no systematic differences between the two columns were observed.

Gender Specific Reproductive Strategies of an Arctic Key Species (Boreogadus saida) and Implications of Climate Change

PubMed Central

Nahrgang, Jasmine; Varpe, Øystein; Korshunova, Ekaterina; Murzina, Svetlana; Hallanger, Ingeborg G.; Vieweg, Ireen; Berge, Jørgen

2014-01-01

The Arctic climate is changing at an unprecedented rate. What consequences this may have on the Arctic marine ecosystem depends to a large degree on how its species will respond both directly to elevated temperatures and more indirectly through ecological interactions. But despite an alarming recent warming of the Arctic with accompanying sea ice loss, reports evaluating ecological impacts of climate change in the Arctic remain sparse. Here, based upon a large-scale field study, we present basic new knowledge regarding the life history traits for one of the most important species in the entire Arctic, the polar cod (Boreogadus saida). Furthermore, by comparing regions of contrasting climatic influence (domains), we present evidence as to how its growth and reproductive success is impaired in the warmer of the two domains. As the future Arctic is predicted to resemble today's Atlantic domains, we forecast changes in growth and life history characteristics of polar cod that will lead to alteration of its role as an Arctic keystone species. This will in turn affect community dynamics and energy transfer in the entire Arctic food chain. PMID:24871481

Potential fitness benefits from mate selection in the Atlantic cod (Gadus morhua).

PubMed

Rudolfsen, G; Figenschou, L; Folstad, I; Nordeide, J T; Søreng, E

2005-01-01

Little evidence of benefits from female mate choice has been found when males provide no parental care or resources. Yet, good genes models of sexual selection suggest that elaborated male sexual characters are reliable signals of mate quality and that the offspring of males with elaborate sexual ornaments will perform better than those of males with less elaborate ornaments. We used cod (Gadus morhua L.), an externally fertilizing species where males provide nothing but sperm, to examine the potential of optimal mate selection with respect to offspring survival. By applying in vitro fertilizations, we crossed eight females with nine males in all possible combinations and reared each of the 72 sib groups. We found that offspring survival was dependent on which female was mated with which male and that optimal mate selection has the potential to increase mean offspring survival from 31.9 to 55.6% (a 74% increase). However, the size of the male sexual ornaments and sperm quality (i.e. sperm velocity and sperm density) could not predict offspring survival. Thus, even if there may be large fitness benefits of mate selection, we might not yet have identified the male characteristics generating high offspring survival.

Signatures of the collapse and incipient recovery of an overexploited marine ecosystem

PubMed Central

Thompson, Patrick L.; Ball, R. Aaron; Fortin, Marie-Josée; Gouhier, Tarik C.; Link, Heike; Moritz, Charlotte; Nenzen, Hedvig; Stanley, Ryan R. E.; Taranu, Zofia E.; Gonzalez, Andrew; Guichard, Frédéric; Pepin, Pierre

2017-01-01

The Northwest Atlantic cod stocks collapsed in the early 1990s and have yet to recover, despite the subsequent establishment of a continuing fishing moratorium. Efforts to understand the collapse and lack of recovery have so far focused mainly on the dynamics of commercially harvested species. Here, we use data from a 33-year scientific trawl survey to determine to which degree the signatures of the collapse and recovery of the cod are apparent in the spatial and temporal dynamics of the broader groundfish community. Over this 33-year period, the groundfish community experienced four phases of change: (i) a period of rapid, synchronous biomass collapse in most species, (ii) followed by a regime shift in community composition with a concomitant loss of functional diversity, (iii) followed in turn by periods of slow compositional recovery, and (iv) slow biomass growth. Our results demonstrate how a community-wide perspective can reveal new aspects of the dynamics of collapse and recovery unavailable from the analysis of individual species or a combination of a small number of species. Overall, we found evidence that such community-level signals should be useful for designing more effective management strategies to ensure the persistence of exploited marine ecosystems. PMID:28791149

The First Bromeligenous Species of Dendropsophus (Anura: Hylidae) from Brazil's Atlantic Forest.

PubMed

Ferreira, Rodrigo B; Faivovich, Julián; Beard, Karen H; Pombal, José P

2015-01-01

We describe a new treefrog species of Dendropsophus collected on rocky outcrops in the Brazilian Atlantic Forest. Ecologically, the new species can be distinguished from all known congeners by having a larval phase associated with rainwater accumulated in bromeliad phytotelms instead of temporary or lentic water bodies. Phylogenetic analysis based on molecular data confirms that the new species is a member of Dendropsophus; our analysis does not assign it to any recognized species group in the genus. Morphologically, based on comparison with the 96 known congeners, the new species is diagnosed by its small size, framed dorsal color pattern, and short webbing between toes IV-V. The advertisement call is composed of a moderate-pitched two-note call (~5 kHz). The territorial call contains more notes and pulses than the advertisement call. Field observations suggest that this new bromeligenous species uses a variety of bromeliad species to breed in, and may be both territorial and exhibit male parental care.

The First Bromeligenous Species of Dendropsophus (Anura: Hylidae) from Brazil's Atlantic Forest

PubMed Central

Ferreira, Rodrigo B.; Faivovich, Julián; Beard, Karen H.; Pombal, José P.

2015-01-01

We describe a new treefrog species of Dendropsophus collected on rocky outcrops in the Brazilian Atlantic Forest. Ecologically, the new species can be distinguished from all known congeners by having a larval phase associated with rainwater accumulated in bromeliad phytotelms instead of temporary or lentic water bodies. Phylogenetic analysis based on molecular data confirms that the new species is a member of Dendropsophus; our analysis does not assign it to any recognized species group in the genus. Morphologically, based on comparison with the 96 known congeners, the new species is diagnosed by its small size, framed dorsal color pattern, and short webbing between toes IV-V. The advertisement call is composed of a moderate-pitched two-note call (~5 kHz). The territorial call contains more notes and pulses than the advertisement call. Field observations suggest that this new bromeligenous species uses a variety of bromeliad species to breed in, and may be both territorial and exhibit male parental care. PMID:26650515

Biometric studies on premetamorphic eel larvae of Anguilla anguilla (Anguilliformes: Anguillidae) in comparison with younger developmental stages of the species

NASA Astrophysics Data System (ADS)

Strehlow, B.

1996-09-01

387 premetamorphic leptocephali of the family Anguillidae caught off the west coast of Europe were examined taxonomically and compared with the youngest developmental stages of larvae of Anguilla anguilla caught in the Sargasso Sea 1979 (Schoth, 1982). The total number of myomeres and the number of myomeres up to the third, opistonephritic blood vessel present features of this species which are significantly different from those of the larvae of Anguilla rostrata and do not change during the whole larval phase. A combination of these two biometric features enables an infallible species identification of the Atlantic Anguilla larvae at all developmental stages. The number of predorsal and preanal myomeres, the preanal length and features of the head cannot be used for a distinction of Anguilla larvae. One larva, 68.7 mm long, with 107 myomeres, and 44 myomeres to the opistonephritic blood vessel represents the hitherto southernmost record of an A. rostrata larva in the eastern North Atlantic.

Real-time ichthyoplankton drift in Northeast Arctic cod and Norwegian spring-spawning herring.

PubMed

Vikebø, Frode B; Ådlandsvik, Bjørn; Albretsen, Jon; Sundby, Svein; Stenevik, Erling Kåre; Huse, Geir; Svendsen, Einar; Kristiansen, Trond; Eriksen, Elena

2011-01-01

Individual-based biophysical larval models, initialized and parameterized by observations, enable numerical investigations of various factors regulating survival of young fish until they recruit into the adult population. Exponentially decreasing numbers in Northeast Arctic cod and Norwegian Spring Spawning herring early changes emphasizes the importance of early life history, when ichthyoplankton exhibit pelagic free drift. However, while most studies are concerned with past recruitment variability it is also important to establish real-time predictions of ichthyoplankton distributions due to the increasing human activity in fish habitats and the need for distribution predictions that could potentially improve field coverage of ichthyoplankton. A system has been developed for operational simulation of ichthyoplankton distributions. We have coupled a two-day ocean forecasts from the Norwegian Meteorological Institute with an individual-based ichthyoplankton model for Northeast Arctic cod and Norwegian Spring Spawning herring producing daily updated maps of ichthyoplankton distributions. Recent years observed spawning distribution and intensity have been used as input to the model system. The system has been running in an operational mode since 2008. Surveys are expensive and distributions of early stages are therefore only covered once or twice a year. Comparison between model and observations are therefore limited in time. However, the observed and simulated distributions of juvenile fish tend to agree well during early fall. Area-overlap between modeled and observed juveniles September 1(st) range from 61 to 73%, and 61 to 71% when weighted by concentrations. The model system may be used to evaluate the design of ongoing surveys, to quantify the overlap with harmful substances in the ocean after accidental spills, as well as management planning of particular risky operations at sea. The modeled distributions are already utilized during research surveys to estimate coverage success of sampled biota and immediately after spills from ships at sea.

Real-Time Ichthyoplankton Drift in Northeast Arctic Cod and Norwegian Spring-Spawning Herring

PubMed Central

Vikebø, Frode B.; Ådlandsvik, Bjørn; Albretsen, Jon; Sundby, Svein; Stenevik, Erling Kåre; Huse, Geir; Svendsen, Einar; Kristiansen, Trond; Eriksen, Elena

2011-01-01

Background Individual-based biophysical larval models, initialized and parameterized by observations, enable numerical investigations of various factors regulating survival of young fish until they recruit into the adult population. Exponentially decreasing numbers in Northeast Arctic cod and Norwegian Spring Spawning herring early changes emphasizes the importance of early life history, when ichthyoplankton exhibit pelagic free drift. However, while most studies are concerned with past recruitment variability it is also important to establish real-time predictions of ichthyoplankton distributions due to the increasing human activity in fish habitats and the need for distribution predictions that could potentially improve field coverage of ichthyoplankton. Methodology/Principal Findings A system has been developed for operational simulation of ichthyoplankton distributions. We have coupled a two-day ocean forecasts from the Norwegian Meteorological Institute with an individual-based ichthyoplankton model for Northeast Arctic cod and Norwegian Spring Spawning herring producing daily updated maps of ichthyoplankton distributions. Recent years observed spawning distribution and intensity have been used as input to the model system. The system has been running in an operational mode since 2008. Surveys are expensive and distributions of early stages are therefore only covered once or twice a year. Comparison between model and observations are therefore limited in time. However, the observed and simulated distributions of juvenile fish tend to agree well during early fall. Area-overlap between modeled and observed juveniles September 1st range from 61 to 73%, and 61 to 71% when weighted by concentrations. Conclusions/Significance The model system may be used to evaluate the design of ongoing surveys, to quantify the overlap with harmful substances in the ocean after accidental spills, as well as management planning of particular risky operations at sea. The modeled distributions are already utilized during research surveys to estimate coverage success of sampled biota and immediately after spills from ships at sea. PMID:22110633

Cloning and characterization of transferrin cDNA and rapid detection of transferrin gene polymorphism in rainbow trout (Oncorhynchus mykiss).

PubMed

Tange, N; Jong-Young, L; Mikawa, N; Hirono, I; Aoki, T

1997-12-01

A cDNA clone of rainbow trout (Oncorhynchus mykiss) transferrin was obtained from a liver cDNA library. The 2537-bp cDNA sequence contained an open reading frame encoding 691 amino acids and the 5' and 3' noncoding regions. The amino acid sequences at the iron-binding sites and the two N-linked glycosylation sites, and the cysteine residues were consistent with known, conserved vertebrate transferrin cDNA sequences. Single N-linked glycosylation sites existed on the N- and C-lobe. The deduced amino acid sequence of the rainbow trout transferrin cDNA had 92.9% identities with transferrin of coho salmon (Oncorhynchus kisutch); 85%, Atlantic salmon (Salmo salar); 67.3%, medaka (Oryzias latipes); 61.3% Atlantic cod (Gadus morhua); and 59.7%, Japanese flounder (Paralichthys olivaceus). The long and accurate polymerase chain reaction (LA-PCR) was used to amplify approximately 6.5 kb of the transferrin gene from rainbow trout genomic DNA. Restriction fragment length polymorphisms (RFLPs) of the LA-PCR products revealed three digestion patterns in 22 samples.

Diversity of macrofaunal Mollusca of the abyssal Vema Fracture Zone and hadal Puerto Rico Trench, Tropical North Atlantic

NASA Astrophysics Data System (ADS)

Linse, Katrin; Schwabe, Enrico

2018-02-01

While biodiversity patterns of Atlantic deep-sea bivalves and gastropods have served as model taxa for setting global latitudinal and bathymetric hypotheses, less is known on abyssal, amphi-Atlantic molluscan assemblage compositions. The Vema-TRANSIT expedition sampled 17 stations in the Vema Fracture Zone (VFZ) and the Puerto Rico Trench (PRT) by epibenthic sledge. These samples comprised a total of 1333 specimens and 64 morphospecies of the classes Caudofoveata (7 species), Solenogastres (7 spp.), Bivalvia (22 spp.), Gastropoda (24 spp.), and Scaphopoda (4 spp.) while Cephalopoda, Monoplacophora and Polyplacophora were absent. The majority of species was rare with 21 uniques (32.8% of all species) and 10 duplicates (15.6% of all species) and of these 15 (48% of rare/23.4% of all species) morphospecies were singletons and 8 (25.8% of rare/12.5% of all species) morphospecies were doubletons. Overall bivalves (686 specimens) were most abundant, followed by scaphopods (314 spec.), while solenogastres (180 spec.), caudofoveates (86 spec.) and gastropods (67 spec.) were less abundant. The abyssal macro-molluscan species composition did not vary significantly between the eastern and western Atlantic sides of the VFZ while abundances standardized to 1000 m2 trawled area were higher on the eastern side. The abyssal PRT stations resembled the VFZ ones in species composition and abundances, in the latter the eastern VFZ. The hadal PRT differed in species composition from the abyssal VFZ and PRT and abundances were similarly low like the western VFZ. The Mid-Atlantic Ridge appeared not to be a barrier for the dispersal of the mostly lecitotrophic or plankotrophic larval stages of the reported molluscan species in this study.

Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic). Striped Bass

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fay, C.W.; Neves, R.J.; Pardue, G.B.

1983-10-01

Species profiles are literature summaries on the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. The striped bass (Morone saxatilis) is a highly valued recreational and commercial fish species and is surpassed in total recreational catch (weight) only by bluefish and Atlantic mackerel on the Atlantic coast. Males mature at age 2 or 3, and females at age 4 or 5. Striped bass are anadromous, spawning in fresh or nearly fresh water, from April through June in the Mid-Atlantic region. Upper Chesapeake Bay, its major tributaries, and the Chesapeake-Delaware Canal are the most important spawning groundsmore » on the Atlantic coast. Eggs are semibuoyant, and require a minimum current velocity of 30.5 cm/s during development to keep them from settling and smothering on the bottom. Environmental conditions during the larval stage are considered most crucial in terms of future year class strength. Juveniles remain in or near areas of origin for 2 or 3 years, at which time a portion of the juveniles may join coastal migratory stocks, moving north in spring and summer and south in fall and winter. Temperature, salinity, current velocity, and turbidity are important environmental factors for striped bass. Eggs require water temperatures between 14/sup 0/C and 23/sup 0/C, salinities between 0 and 10 ppt, water currents of at least 30.5 cm/s, and turbidities less than 1000 mg/l for successful development and hatching. Larvae require temperatures between 10/sup 0/C and 25/sup 0/C, salinities between 0 and 15 ppt, and turbidities less than 500 mg/1 for survival. Juvenile and adult tolerances are generally wider. 171 references, 4 figures, 9 tables.« less

Temperature effects on egg development and larval condition in the lesser sandeel, Ammodytes marinus

NASA Astrophysics Data System (ADS)

Régnier, Thomas; Gibb, Fiona M.; Wright, Peter J.

2018-04-01

Understanding the influence of temperature on egg development and larval condition in planktonic fish is a prerequisite to understanding the phenological impacts of climate change on marine food-webs. The lesser sandeel, Ammodytes marinus (Raitt 1934), is a key trophic link between zooplankton and many piscivorous fish, sea birds and mammals in the northeast Atlantic. Temperature-egg development relationships were determined for batches of lesser sandeel eggs. Hatching began as early as 19 days post fertilisation at 11 °C and as late as 36 days post fertilisation at 6 °C, which is faster than egg development rates reported for closely related species at the lower end of the tested temperature range. The average size of newly hatched larvae decreased with increasing incubation temperatures in early hatching larvae, but this effect was lost by the middle of the hatching period. While the study revealed important temperature effects on egg development rate, predicted variability based on the range of temperatures eggs experience in the field, suggests it is only a minor contributor to the observed inter-annual variation in hatch date.

The role of sea surface circulation and hydrographic processes in anchovy spawning and larvae distribution in the Strait of Sicily (Central Mediterranean).

NASA Astrophysics Data System (ADS)

Falcini, Federico; Palatella, Luigi; Cuttitta, Angela; Bignami, Francesco; Patti, Bernardo; Santoleri, Rosalia; Fiorentino, Fabio

2014-05-01

The European Anchovy (Engraulis encrasicolus, Linnaeus, 1758) is one of the most important resources of the Mediterranean Sea. Despite its abundance and relevance, the anchovy population off the Mediterranean coasts exhibits a patchy distribution. Moreover, its biology and the influence of environment on its variability is poorly known. We here use data from ichthyoplankton-surveys carried out during the peak spawning season in order to analyze abundance and age of anchovy larvae in the Strait of Sicily, with respect to sea surface dynamic and hydrographic parameter patterns. The Strait of Sicily dynamics is characterized by upwelling regions, fronts, vortices, and filaments, with a consequent complexity in the spatial distribution of oceanographic parameters and anchovy larvae. To investigate the role of mesoscale features and oceanographic environment on the latter, anchovy larvae observations were paired to remote sensing data (such as sea surface temperature, chlorophyll, primary production, surface wind speed as well as light attenuation, absorption, and particle backscattering coefficients) and Lagrangian and Eulerian numerical simulations results for ocean currents and larval transport. The subsequent analysis shows and quantifies how the Atlantic Ionian Stream (AIS, a meandering current of Atlantic origin) path and variability, as well as the upwelling-induced south Sicilian coastal current, have consequences for anchovy spawning and larvae distribution. These currents transport anchovy larvae towards the Sicilian coast's south-eastern tip, where larvae are then retained in a frontal structure. However, significant cross-shore transport events due to relatively cold filament-like baroclinic instabilities generated by wind-induced coastal upwelling were also observed. Finally, the larval age distribution qualitatively agrees well with this transport pattern.

The Distribution of Dissolved Barium from US GEOTRACES cruises in the North Atlantic and Eastern Tropical South Pacific

NASA Astrophysics Data System (ADS)

Shiller, A. M.; Grissom, K.

2014-12-01

Interest in the oceanic geochemistry of barium (Ba) stems from a variety of reasons including its use as a paleo-productivity indicator, its chemical similarity to Ra, and its utility as a water source tracer. To better constrain these uses of Ba, we have obtained trace element clean samples from both the North Atlantic and Eastern Pacific US GEOTRACES cruises. Analytical work on the Pacific samples is proceeding while work on the Atlantic samples is complete. For the Pacific, 36 stations were occupied from Peru to Tahiti. For the Atlantic, dissolved Ba was determined at 32 stations across the North Atlantic during US cruises GT10 and GT11 along the meridional transect from Lisbon to the Cape Verde Islands and the zonal transect from Cape Cod to the Mauritanian coast. In the Atlantic, the general distribution of dissolved Ba exhibits a vertical bifurcation at approximately 500 m into shallow versus deep water. The greatest variation is found on the eastern side of the basin with concentrations ranging from 35 nmol/kg at the near surface (100 m) to over 83 nmol/kg at depth. A reduction of Ba in excess of 20% compared to the average of mesopelagic depths less than 500 m is observed within the Canary Current upwelling zone east of the Cape Verde Islands and accompanied to some extent by a subsequent regeneration at depth. Below 500 m, dissolved Ba correlates well with dissolved Si, whereas the correlation with alkalinity is poor at depth and shows a decoupling above 500 m. There is evidence of hydrothermal Ba input at the TAG vent system of the Mid-Atlantic Ridge along transect GT11 as indicated by the rapid increase in the dissolved Ba below 2500 m in conjunction with increases in Fe and Mn. In addition to the hydrothermal source, a near surface (~40 m) maximum of 51 nmol/kg is found along the continental slope of North America in correspondence with a minimum surface salinity (34.75) and increased dissolved manganese indicating either fluvial or sediment input; however, a similar input is not evident along the North African continental margin. We will contrast the Atlantic distribution with the Pacific as data become available.

Multiple SNP Markers Reveal Fine-Scale Population and Deep Phylogeographic Structure in European Anchovy (Engraulis encrasicolus L.)

PubMed Central

Zarraonaindia, Iratxe; Iriondo, Mikel; Albaina, Aitor; Pardo, Miguel Angel; Manzano, Carmen; Grant, W. Stewart; Irigoien, Xabier; Estonba, Andone

2012-01-01

Geographic surveys of allozymes, microsatellites, nuclear DNA (nDNA) and mitochondrial DNA (mtDNA) have detected several genetic subdivisions among European anchovy populations. However, these studies have been limited in their power to detect some aspects of population structure by the use of a single or a few molecular markers, or by limited geographic sampling. We use a multi-marker approach, 47 nDNA and 15 mtDNA single nucleotide polymorphisms (SNPs), to analyze 626 European anchovies from the whole range of the species to resolve shallow and deep levels of population structure. Nuclear SNPs define 10 genetic entities within two larger genetically distinctive groups associated with oceanic variables and different life-history traits. MtDNA SNPs define two deep phylogroups that reflect ancient dispersals and colonizations. These markers define two ecological groups. One major group of Iberian-Atlantic populations is associated with upwelling areas on narrow continental shelves and includes populations spawning and overwintering in coastal areas. A second major group includes northern populations in the North East (NE) Atlantic (including the Bay of Biscay) and the Mediterranean and is associated with wide continental shelves with local larval retention currents. This group tends to spawn and overwinter in oceanic areas. These two groups encompass ten populations that differ from previously defined management stocks in the Alboran Sea, Iberian-Atlantic and Bay of Biscay regions. In addition, a new North Sea-English Channel stock is defined. SNPs indicate that some populations in the Bay of Biscay are genetically closer to North Western (NW) Mediterranean populations than to other populations in the NE Atlantic, likely due to colonizations of the Bay of Biscay and NW Mediterranean by migrants from a common ancestral population. Northern NE Atlantic populations were subsequently established by migrants from the Bay of Biscay. Populations along the Iberian-Atlantic coast appear to have been founded by secondary waves of migrants from a southern refuge. PMID:22860082

Spatial scale of similarity as an indicator of metacommunity stability in exploited marine systems.

PubMed

Shackell, Nancy L; Fisher, Jonathan A D; Frank, Kenneth T; Lawton, Peter

2012-01-01

The spatial scale of similarity among fish communities is characteristically large in temperate marine systems: connectivity is enhanced by high rates of dispersal during the larval/juvenile stages and the increased mobility of large-bodied fish. A larger spatial scale of similarity (low beta diversity) is advantageous in heavily exploited systems because locally depleted populations are more likely to be "rescued" by neighboring areas. We explored whether the spatial scale of similarity changed from 1970 to 2006 due to overfishing of dominant, large-bodied groundfish across a 300 000-km2 region of the Northwest Atlantic. Annually, similarities among communities decayed slowly with increasing geographic distance in this open system, but through time the decorrelation distance declined by 33%, concomitant with widespread reductions in biomass, body size, and community evenness. The decline in connectivity stemmed from an erosion of community similarity among local subregions separated by distances as small as 100 km. Larger fish, of the same species, contribute proportionally more viable offspring, so observed body size reductions will have affected maternal output. The cumulative effect of nonlinear maternal influences on egg/larval quality may have compromised the spatial scale of effective larval dispersal, which may account for the delayed recovery of certain member species. Our study adds strong support for using the spatial scale of similarity as an indicator of metacommunity stability both to understand the spatial impacts of exploitation and to refine how spatial structure is used in management plans.

Predation on larval Atlantic herring (Clupea harengus) in inshore waters of the Baltic Sea

NASA Astrophysics Data System (ADS)

Kotterba, Paul; Moll, Dorothee; von Nordheim, Lena; Peck, Myron A.; Oesterwind, Daniel; Polte, Patrick

2017-11-01

In fishery science, early life-stage survival and development are regarded as major factors driving the population dynamics of marine fishes. During the last century, the main research focus has been on the spatio-temporal match of larval fish and appropriate food (bottom-up processes). However, these field studies are often criticised for their limited capability to disentangle their results from mortality caused by predation since these top-down mechanisms are rarely studied. We examined the predation on herring (Clupea harengus) larvae in a Baltic inshore lagoon by investigating the spatio-temporal overlap of larval herring and their potential predators such as the dominant threespine stickleback (Gasterosteus aculeatus) in distinct habitats (sublittoral and littoral areas) using a set of different gears and sampling techniques. Despite significant spatial and temporal predator-prey overlap, stomach analyses suggested that very few larvae were consumed by sticklebacks, even if projected to the entire study area and season. Other well-known predators of clupeid larvae such as gelatinous plankton occur later in the year after young herring have migrated out of the system. The observed predation on herring larvae was much less than expected and appears being a minor factor in determining herring reproduction success in our study area, particularly if compared to other causes of mortality such as egg predation. Providing a relatively good shelter from predation might be a key element making transitional waters valuable nursery grounds for the offspring of migrating marine fish species.

Impact of long-term moderate hypercapnia and elevated temperature on the energy budget of isolated gills of Atlantic cod (Gadus morhua).

PubMed

Kreiss, Cornelia M; Michael, Katharina; Bock, Christian; Lucassen, Magnus; Pörtner, Hans-O

2015-04-01

Effects of severe hypercapnia have been extensively studied in marine fishes, while knowledge on the impacts of moderately elevated CO2 levels and their combination with warming is scarce. Here we investigate ion regulation mechanisms and energy budget in gills from Atlantic cod acclimated long-term to elevated PCO2 levels (2500 μatm) and temperature (18°C). Isolated perfused gill preparations were established to determine gill thermal plasticity during acute exposures (10-22°C) and in vivo costs of Na(+)/K(+)-ATPase activity, protein and RNA synthesis. Maximum enzyme capacities of F1Fo-ATPase, H(+)-ATPase and Na(+)/K(+)-ATPase were measured in vitro in crude gill homogenates. After whole animal acclimation to elevated PCO2 and/or warming, branchial oxygen consumption responded more strongly to acute temperature change. The fractions of gill respiration allocated to protein and RNA synthesis remained unchanged. In gills of fish CO2-exposed at both temperatures, energy turnover associated with Na(+)/K(+)-ATPase activity was reduced by 30% below rates of control fish. This contrasted in vitro capacities of Na(+)/K(+)-ATPase, which remained unchanged under elevated CO2 at 10°C, and earlier studies which had found a strong upregulation under severe hypercapnia. F1Fo-ATPase capacities increased in hypercapnic gills at both temperatures, whereas Na(+)/K(+)ATPase and H(+)-ATPase capacities only increased in response to elevated CO2 and warming indicating the absence of thermal compensation under CO2. We conclude that in vivo ion regulatory energy demand is lowered under moderately elevated CO2 levels despite the stronger thermal response of total gill respiration and the upregulation of F1Fo-ATPase. This effect is maintained at elevated temperature. Copyright © 2014 Elsevier Inc. All rights reserved.

Don't bet against the natal homing abilities of marine fishes.

PubMed

Bentzen, Paul; Bradbury, Ian R

2016-06-01

Whether marine fishes are capable of homing to their natal areas has long been something of an enigma. For some estuarine species or sharks (which have extended nondispersal juvenile stages or are born as relatively large, fully formed juveniles), the answer is clearly 'yes' (Thorrold et al. ; Feldheim et al. ), but for most marine fishes, the issue is much more mysterious. Many species have free-floating eggs, and most have pelagic, passively dispersing larvae. It is challenging to imagine how adult fish might navigate to a region of the ocean they experienced only as eggs or larvae, and easier to assume that such dispersal leads inexorably to high gene flow, and even panmixia. One way to resolve the conundrum would be to track fish from hatching to reproduction, but for marine fishes with tiny eggs and drifting larvae, this is notoriously difficult to do (Bradbury & Laurel ). In this issue of Molecular Ecology, Bonanomi et al. () use a creative approach to solve this challenge for Atlantic cod (Gadus morhua) populations that mingle in the vicinity of Greenland. They show that cod that disperse more than a 1000 km away from Iceland as eggs and larvae, then spend years growing on the far side of Greenland, while mixing with two local populations, return as adults to spawning areas near Iceland - and further, that this behaviour has remained stable over more than six decades. They manage this feat with a clever use of historical cod tracking data, modern genomic data and genetic analysis of decades-old DNA obtained from archived materials. Their results have important implications for our view of the biocomplexity of marine fish populations, and how we should manage them. © 2016 John Wiley & Sons Ltd.

The Two-Column Aerosol Project: Phase I-Overview and impact of elevated aerosol layers on aerosol optical depth

DOE PAGES

Berg, Larry K.; Fast, Jerome D.; Barnard, James C.; ...

2016-01-08

The Two-Column Aerosol Project (TCAP), conducted from June 2012 through June 2013, was a unique study designed to provide a comprehensive data set that can be used to investigate a number of important climate science questions, including those related to aerosol mixing state and aerosol radiative forcing. The study was designed to sample the atmosphere between and within two atmospheric columns; one fixed near the coast of North America (over Cape Cod, MA) and a second moveable column over the Atlantic Ocean several hundred kilometers from the coast. The U.S. Department of Energy's (DOE) Atmospheric Radiation Measurement (ARM) Mobile Facilitymore » (AMF) was deployed at the base of the Cape Cod column, and the ARM Aerial Facility was utilized for the summer and winter intensive observation periods. One important finding from TCAP is that four of six nearly cloud-free flight days had aerosol layers aloft in both the Cape Cod and maritime columns that were detected using the nadir pointing second-generation NASA high-spectral resolution lidar (HSRL-2). In addition, these layers contributed up to 60% of the total observed aerosol optical depth (AOD). Many of these layers were also intercepted by the aircraft configured for in situ sampling, and the aerosol in the layers was found to have increased amounts of biomass burning material and nitrate compared to aerosol found near the surface. Lastly, while there was a great deal of spatial and day-to-day variability in the aerosol chemical composition and optical properties, no systematic differences between the two columns were observed.« less

Column and Near-surface Aerosol Properties during TCAP: Temporal Changes in a Coastal Region

NASA Astrophysics Data System (ADS)

Kassianov, E.; Barnard, J.; Pekour, M. S.; Berg, L. K.; Shilling, J. E.; Fast, J. D.; Michalsky, J. J.; Lantz, K. O.; Hodges, G.

2013-12-01

An important problem facing climate-related studies is to separate the impacts of naturally occurring and anthropogenic aerosol. This problem is even more challenging in coastal regions located downwind of large metropolitan areas. Cape Cod situated on the easternmost portion of Massachusetts (along the east coast of the United States) is an example of one of these regions. The Two-Column Aerosol Project (TCAP; http://campaign.arm.gov/tcap/) was designed to study the evolution of optical, microphysical and chemical properties of both marine aerosol and aerosol transported from North America to the Atlantic as well as their impact on the radiation energy budget. The TCAP has been recently conducted (2012-2013) on Cape Cod with support from the U.S. Department of Energy's (DOE's) Atmospheric Radiation Measurement (ARM) Program (http://www.arm.gov/). During the TCAP, the ground-based ARM Mobile Facility (AMF) was deployed on Cape Cod. The AMF site (at 41.87°N; 70.28°W) was equipped with numerous instruments for sampling aerosol, cloud and radiative properties, including a Multi-Filter Rotating Shadowband Radiometer (MFRSR), a Scanning Mobility Particle Sizer (SMPS), an Aerodynamic Particle Sizer (APS), a three-wavelength nephelometer, and suite of instruments to measure the aerosol chemical composition. In this study we present an analysis of diurnal and day-to-day variability of the column and near-surface aerosol properties obtained from remote sensing (MFRSR data) and in situ measurements (SMPS, APS, nephelometer, chemical composition), respectively. The importance of this variability to direct aerosol radiative forcing at different time scales and its relation to the long-range transport will be discussed. Some regional model results will also be presented.

Field-level validation of a CLIMEX model for Cactoblastis cactorum (Lepidoptera: Pyralidae) using estimated larval growth rates.

PubMed

Legaspi, Benjamin C; Legaspi, Jesusa Crisostomo

2010-04-01

Invasive pests, such as the cactus moth, Cactoblastis cactorum (Berg) (Lepidoptera: Pyralidae), have not reached equilibrium distributions and present unique opportunities to validate models by comparing predicted distributions with eventual realized geographic ranges. A CLIMEX model was developed for C. cactorum. Model validation was attempted at the global scale by comparing worldwide distribution against known occurrence records and at the field scale by comparing CLIMEX "growth indices" against field measurements of larval growth. Globally, CLIMEX predicted limited potential distribution in North America (from the Caribbean Islands to Florida, Texas, and Mexico), Africa (South Africa and parts of the eastern coast), southern India, parts of Southeast Asia, and the northeastern coast of Australia. Actual records indicate the moth has been found in the Caribbean (Antigua, Barbuda, Montserrat Saint Kitts and Nevis, Cayman Islands, and U.S. Virgin Islands), Cuba, Bahamas, Puerto Rico, southern Africa, Kenya, Mexico, and Australia. However, the model did not predict that distribution would extend from India to the west into Pakistan. In the United States, comparison of the predicted and actual distribution patterns suggests that the moth may be close to its predicted northern range along the Atlantic coast. Parts of Texas and most of Mexico may be vulnerable to geographic range expansion of C. cactorum. Larval growth rates in the field were estimated by measuring differences in head capsules and body lengths of larval cohorts at weekly intervals. Growth indices plotted against measures of larval growth rates compared poorly when CLIMEX was run using the default historical weather data. CLIMEX predicted a single period conducive to insect development, in contrast to the three generations observed in the field. Only time and more complete records will tell whether C. cactorum will extend its geographical distribution to regions predicted by the CLIMEX model. In terms of small scale temporal predictions, this study suggests that CLIMEX indices may agree with field-specific population dynamics, provided an adequate metric for insect growth rate is used and weather data are location and time specific.

RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.

PubMed

Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd André

2018-06-07

Polycyclic aromatic hydrocarbons such as benzo[a]pyrene (BaP) that activate the aryl hydrocarbon receptor (Ahr) pathway, and endocrine disruptors acting through the estrogen receptor pathway are among environmental pollutants of major concern. In this work, we exposed Atlantic cod (Gadus morhua) precision-cut liver slices (PCLS) to BaP (10 nM and 1000 nM), ethynylestradiol (EE2) (10 nM and 1000 nM), and equimolar mixtures of BaP and EE2 (10 nM and 1000 nM) for 48 h, and performed RNA-Seq based transcriptome mapping followed by systematic bioinformatics analyses. Our gene expression analysis showed that several genes were differentially expressed in response to BaP and EE2 treatments in PCLS. Strong up-regulation of genes coding for the cytochrome P450 1a (Cyp1a) enzyme and the Ahr repressor (Ahrrb) was observed in BaP treated PCLS. EE2 treatment of liver slices strongly up-regulated genes coding for precursors of vitellogenin (Vtg) and eggshell zona pellucida (Zp) proteins. As expected, pathway enrichment and network analysis showed that the Ahr and estrogen receptor pathways are among the top affected by BaP and EE2 treatments, respectively. Interestingly, two genes coding for fibroblast growth factor 3 (Fgf3) and fibroblast growth factor 4 (Fgf4) were up-regulated by EE2 in this study. To our knowledge, the fgf3 and fgf4 genes have not previously been described in relation to estrogen signaling in fish liver, and these results suggest the modulation of the FGF signaling pathway by estrogens in fish. The signature expression profiles of top differentially expressed genes in response to the single compound (BaP or EE2) treatment were generally maintained in the expression responses to the equimolar binary mixtures. However, in the mixture-treated groups, BaP appeared to have anti-estrogenic effects as observed by lower number of differentially expressed putative EE2 responsive genes. Our in-depth quantitative analysis of changes in liver transcriptome in response to BaP and EE2, using PCLS tissue culture provides further mechanistic insights into effects of the compounds. Moreover, the analyses demonstrate the usefulness of PCLS in cod for omics experiments. Copyright © 2018 Elsevier B.V. All rights reserved.

Net-mortality of Common Murres and Atlantic Puffins in Newfoundland, 1951-81

USGS Publications Warehouse

Piatt, John F.; Nettleship, David N.; Threlfall, William; Nettleship, David N.; Sanger, Gerald A.; Springer, Paul F.

1982-01-01

Band recoveries (N = 315) over 26 years (1951-77) and three surveys of seabird bycatch in inshore fishing nets (1972, 1980-81) indicate that there has been a substantial net-mortality of Atlantic Puffins (Fratercula arctica) and Common Murres (Uria aalge) in Newfoundland coastal waters for the past 2 decades. Offshore (e.g. Grand Banks) gill-netting is limited, but some data suggest that murre net-mortality also occurs offshore at murre wintering areas. The vast majority of inshore net-mortality incidents occur over a 2-week period during the annual inshore spawning migration of capelin (Mallotus villosus), the major prey item for alcids in eastern Canada. Most murres (83%) were drowned in bottom-set (30-185 m) cod (Gadus morhua) gill nets, whereas more puffins were drowned in surface-set salmon (Salmo salar) gill nets or cod traps (55%) than in cod gillnets (45%). Murre band recoveries, colony censuses, and fishing-effort data suggest that at the second largest Common Murre colony in Newfoundland (Witless Bay Seabird Sanctuary, 77,000 breeding pairs) net-mortality was relatively low in the 1950s and early 1960s, but increased during the 1960s as the murre population grew in size and gill-net fishing effort increased in the colony area. By 1971, net-mortality accounted for 70% of murre band recoveries and calculations show that almost 30,000 breeding adults, or about 20% of the local breeding population, were drowned in that year. More reliable estimates of alcid bycatch in the Witless Bay area have been made on the basis of actual bycatch surveys. In 1972 about 20,000 adult murres, or 13% of the breeding stock, were killed in gill-nets. Net-mortality of murres apparently diminished through the 1970s as capelin stocks declined and fewer birds foraged in heavily netted inshore areas. Bycatch surveys in the Witless Bay area in 1980-81 revealed that, relative to previous years, murre net-mortality was greatly reduced and resulted in the loss of only 3-4% of the breeding stock. Even these low mortality rates, however, are cause for concern as adult murre mortality from all sources (including hunting, oil, and natural mortality) should not exceed 6-12% per annum to maintain a stable breeding population. Little is known about the magnitude of net-mortality at other major Newfoundland murre colonies though it is known to be a problem in all colony areas. The bycatch of adult Atlantic Puffins in the Witless Bay area was low compared to murre bycatch and in 3 years of study never exceeded 1.6% of the breeding population. During the 1970s, fishing effort increased five-fold in colony areas and we predict that if capelin spawning stocks return to early 1970s size, then net-mortality of puffins and murres in Newfoundland coastal regions will increase dramatically. Indeed, preliminary examination of 1982 capelin spawning and seabird bycatch data suggests that capelin were much more abundant inshore and murre bycatch increased two- to three-fold over 1981.

Type of carbohydrate in feed affects the expression of small leucine-rich proteoglycans (SLRPs), glycosaminoglycans (GAGs) and interleukins in skeletal muscle of Atlantic cod (Gadus morhua L.).

PubMed

Tingbø, M G; Pedersen, M E; Grøndahl, F; Kolset, S O; Veiseth-Kent, E; Enersen, G; Hannesson, K O

2012-09-01

Aquaculture requires feed that ensures rapid growth and healthy fish. Higher inclusion of plant ingredients is desirable, as marine resources are limited. In this study we investigated the effects of higher starch inclusion in feed on muscular extracellular matrix and interleukin expression in farmed cod. Starch was replaced by complex fibers in the low-starch diet to keep total carbohydrate inclusion similar. Blood glucose and fructosamine levels were elevated in the high-starch group. The group fed a high-starch diet showed up-regulation on mRNA level of proteoglycans biglycan and decorin. ELISA confirmed the real-time PCR results on protein level for biglycan and also showed increase of lumican. For decorin the protein levels were decreased in the high-starch group, in contrast to real-time PCR results. Disaccharide analyses using HPLC showed reduction of glycosaminoglycans. Further, there was up-regulation of interleukin-1β and -10 on mRNA level in muscle. This study shows that the muscular extracellular matrix composition is affected by diet, and that a high-starch diet results in increased expression of pro-inflammatory genes similar to diabetes in humans. Copyright © 2012 Elsevier Ltd. All rights reserved.

Cod Gadus morhua and climate change: processes, productivity and prediction.

PubMed

Brander, K M

2010-11-01

Environmental factors act on individual fishes directly and indirectly. The direct effects on rates and behaviour can be studied experimentally and in the field, particularly with the advent of ever smarter tags for tracking fishes and their environment. Indirect effects due to changes in food, predators, parasites and diseases are much more difficult to estimate and predict. Climate can affect all life-history stages through direct and indirect processes and although the consequences in terms of growth, survival and reproductive output can be monitored, it is often difficult to determine the causes. Investigation of cod Gadus morhua populations across the whole North Atlantic Ocean has shown large-scale patterns of change in productivity due to lower individual growth and condition, caused by large-scale climate forcing. If a population is being heavily exploited then a drop in productivity can push it into decline unless the level of fishing is reduced: the idea of a stable carrying capacity is a dangerous myth. Overexploitation can be avoided by keeping fishing mortality low and by monitoring and responding rapidly to changes in productivity. There are signs that this lesson has been learned and that G. morhua will continue to be a mainstay of the human diet. © 2010 The Author. Journal of Fish Biology © 2010 The Fisheries Society of the British Isles.

What was natural in the coastal oceans?

PubMed Central

Jackson, Jeremy B. C.

2001-01-01

Humans transformed Western Atlantic coastal marine ecosystems before modern ecological investigations began. Paleoecological, archeological, and historical reconstructions demonstrate incredible losses of large vertebrates and oysters from the entire Atlantic coast. Untold millions of large fishes, sharks, sea turtles, and manatees were removed from the Caribbean in the 17th to 19th centuries. Recent collapses of reef corals and seagrasses are due ultimately to losses of these large consumers as much as to more recent changes in climate, eutrophication, or outbreaks of disease. Overfishing in the 19th century reduced vast beds of oysters in Chesapeake Bay and other estuaries to a few percent of pristine abundances and promoted eutrophication. Mechanized harvesting of bottom fishes like cod set off a series of trophic cascades that eliminated kelp forests and then brought them back again as fishers fished their way down food webs to small invertebrates. Lastly, but most pervasively, mechanized harvesting of the entire continental shelf decimated large, long-lived fishes and destroyed three-dimensional habitats built up by sessile corals, bryozoans, and sponges. The universal pattern of losses demonstrates that no coastal ecosystem is pristine and few wild fisheries are sustainable along the entire Western Atlantic coast. Reconstructions of ecosystems lost only a century or two ago demonstrate attainable goals of establishing large and effective marine reserves if society is willing to pay the costs. Historical reconstructions provide a new scientific framework for manipulative experiments at the ecosystem scale to explore the feasibility and benefits of protection of our living coastal resources. PMID:11344287

Long-term decline in krill stock and increase in salps within the Southern Ocean.

PubMed

Atkinson, Angus; Siegel, Volker; Pakhomov, Evgeny; Rothery, Peter

2004-11-04

Antarctic krill (Euphausia superba) and salps (mainly Salpa thompsoni) are major grazers in the Southern Ocean, and krill support commercial fisheries. Their density distributions have been described in the period 1926-51, while recent localized studies suggest short-term changes. To examine spatial and temporal changes over larger scales, we have combined all available scientific net sampling data from 1926 to 2003. This database shows that the productive southwest Atlantic sector contains >50% of Southern Ocean krill stocks, but here their density has declined since the 1970s. Spatially, within their habitat, summer krill density correlates positively with chlorophyll concentrations. Temporally, within the southwest Atlantic, summer krill densities correlate positively with sea-ice extent the previous winter. Summer food and the extent of winter sea ice are thus key factors in the high krill densities observed in the southwest Atlantic Ocean. Krill need the summer phytoplankton blooms of this sector, where winters of extensive sea ice mean plentiful winter food from ice algae, promoting larval recruitment and replenishing the stock. Salps, by contrast, occupy the extensive lower-productivity regions of the Southern Ocean and tolerate warmer water than krill. As krill densities decreased last century, salps appear to have increased in the southern part of their range. These changes have had profound effects within the Southern Ocean food web.

Traveling around Cape Horn: Otolith chemistry reveals a mixed stock of Patagonian hoki with separate Atlantic and Pacific spawning grounds

USGS Publications Warehouse

Schuchert, P.C.; Arkhipkin, A.I.; Koenig, A.E.

2010-01-01

Trace element fingerprints of edge and core regions in otoliths from 260 specimens of Patagonian hoki, Macruronus magellanicus L??nnberg, 1907, were analyzed by LA-ICPMS to reveal whether this species forms one or more population units (stocks) in the Southern Oceans. Fish were caught on their spawning grounds in Chile and feeding grounds in Chile and the Falkland Islands. Univariate and multivariate analyses of trace element concentrations in the otolith edges, which relate to the adult life of fish, could not distinguish between Atlantic (Falkland) and Pacific (Chile) hoki. Cluster analyses of element concentrations in the otolith edges produced three different clusters in all sample areas indicating high mixture of the stocks. Cluster analysis of trace element concentrations in the otolith cores, relating to juvenile and larval life stages, produced two separate clusters mainly distinguished by 137Ba concentrations. The results suggest that Patagonian hoki is a highly mixed fish stock with at least two spawning grounds around South America. ?? 2009 Elsevier B.V.

Physiological-based modelling of marine fish early life stages provides process knowledge on climate impacts

NASA Astrophysics Data System (ADS)

Peck, M. A.

2016-02-01

Gaining a cause-and-effect understanding of climate-driven changes in marine fish populations at appropriate spatial scales is important for providing robust advice for ecosystem-based fisheries management. Coupling long-term, retrospective analyses and 3-d biophysical, individual-based models (IBMs) shows great potential to reveal mechanism underlying historical changes and to project future changes in marine fishes. IBMs created for marine fish early life stages integrate organismal-level physiological responses and climate-driven changes in marine habitats (from ocean physics to lower trophic level productivity) to test and reveal processes affecting marine fish recruitment. Case studies are provided for hindcasts and future (A1 and B2 projection) simulations performed on some of the most ecologically- and commercially-important pelagic and demersal fishes in the North Sea including European anchovy, Atlantic herring, European sprat and Atlantic cod. We discuss the utility of coupling biophysical IBMs to size-spectrum models to better project indirect (trophodynamic) pathways of climate influence on the early life stages of these and other fishes. Opportunities and challenges are discussed regarding the ability of these physiological-based tools to capture climate-driven changes in living marine resources and food web dynamics of shelf seas.

Genetic variation and geographic differentiation in the marine triclad Bdelloura candida (Platyhelminthes, Tricladida, Maricola), ectocommensal on the American horseshoe crab Limulus polyphemus.

PubMed

Riesgo, Ana; Burke, Emily A; Laumer, Christopher; Giribet, Gonzalo

2017-01-01

Bdelloura candida (Platyhelminthes, Tricladida, Maricola) is an ectocommensal symbiont on the American horseshoe crab Limulus polyphemus , living on the book gills and appendages, where it spends its entire life. Given its limited dispersal capabilities and its inability to live outside of the host, we hypothesized a genetic structure that parallels that of its host. We obtained 84 planarian individuals from 19 horseshoe crabs collected from 10 sites from Massachusetts to Florida. We amplified the mitochondrial 16S rRNA and the nuclear internal transcribed spacer 2 and conducted phylogeographic and population genetic analyses, which show a clear and strong genetic break between the populations in the Atlantic and the Gulf coasts. Among the Atlantic populations, two additional, weaker barriers located along Cape Hatteras and Cape Cod restrict gene flow. Even though previous studies have suggested that the populations of the host may be in decline, those of B. candida remain stable, and some even shows signatures of expansion. Our results indicate that the phylogeography of these marine ectocommensal triclads closely mirrors that of its Limulus host, and highlight the challenges to both host and symbiont to genetically connect populations across their distribution.

Seeing double: visual physiology of double-retina eye ontogeny in stomatopod crustaceans.

PubMed

Feller, Kathryn D; Cohen, Jonathan H; Cronin, Thomas W

2015-03-01

Stomatopod eye development is unusual among crustaceans. Just prior to metamorphosis, an adult retina and associated neuro-processing structures emerge adjacent to the existing material in the larval compound eye. Depending on the species, the duration of this double-retina eye can range from a few hours to several days. Although this developmental process occurs in all stomatopod species observed to date, the retinal physiology and extent to which each retina contributes to the animal's visual sensitivity during this transition phase is unknown. We investigated the visual physiology of stomatopod double retinas using microspectrophotometry and electroretinogram recordings from different developmental stages of the Western Atlantic species Squilla empusa. Though microspectrophotometry data were inconclusive, we found robust ERG responses in both larval and adult retinas at all sampled time points indicating that the adult retina responds to light from the very onset of its emergence. We also found evidence of an increase in the response dynamics with ontogeny as well as an increase in sensitivity of retinal tissue during the double-retina phase relative to single retinas. These data provide an initial investigation into the ontogeny of vision during stomatopod double-retina eye development.

The Story of a Hitchhiker: Population Genetic Patterns in the Invasive Barnacle Balanus(Amphibalanus) improvisus Darwin 1854

PubMed Central

Wrange, Anna-Lisa; Charrier, Gregory; Thonig, Anne; Alm Rosenblad, Magnus; Blomberg, Anders; Havenhand, Jonathan N.; Jonsson, Per R.; André, Carl

2016-01-01

Understanding the ecological and evolutionary forces that determine the genetic structure and spread of invasive species is a key component of invasion biology. The bay barnacle, Balanus improvisus (= Amphibalanus improvisus), is one of the most successful aquatic invaders worldwide, and is characterised by broad environmental tolerance. Although the species can spread through natural larval dispersal, human-mediated transport through (primarily) shipping has almost certainly contributed to the current global distribution of this species. Despite its worldwide distribution, little is known about the phylogeography of this species. Here, we characterize the population genetic structure and model dispersal dynamics of the barnacle B. improvisus, and describe how human-mediated spreading via shipping as well as natural larval dispersal may have contributed to observed genetic variation. We used both mitochondrial DNA (cytochrome c oxidase subunit I: COI) and nuclear microsatellites to characterize the genetic structure in 14 populations of B. improvisus on a global and regional scale (Baltic Sea). Genetic diversity was high in most populations, and many haplotypes were shared among populations on a global scale, indicating that long-distance dispersal (presumably through shipping and other anthropogenic activities) has played an important role in shaping the population genetic structure of this cosmopolitan species. We could not clearly confirm prior claims that B. improvisus originates from the western margins of the Atlantic coasts; although there were indications that Argentina could be part of a native region. In addition to dispersal via shipping, we show that natural larval dispersal may play an important role for further colonisation following initial introduction. PMID:26821161

Contribution to the Biodiversity Assessment of Mosquitoes (Diptera: Culicidae) in the Atlantic Forest in Santa Catarina, Brazil.

PubMed

Ferreira-de-Freitas, Vinícios; França, Rodrigo Massabki; Bartholomay, Lyric C; Marcondes, Carlos Brisola

2017-03-01

The mosquito fauna of a coastal area of Santa Catarina state, Brazil (Baixada do Maciambu), was assessed, and possible mosquito larval habitats were mapped. Five new species records for the state are presented, two of which also are new genera records. From the 24 recognized species present in the area, 28% were from the subfamily Anophelinae and 72% from the Culicinae. The community structure throughout a year, the relevance of the new findings, and the medical importance of some species are discussed. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Surface elevation dynamics in vegetated Spartina marshes versus unvegetated tidal ponds along the mid-Atlantic coast, USA, with implications to waterbirds

USGS Publications Warehouse

Erwin, R. Michael; Cahoon, Donald R.; Prosser, Diann J.; Sanders, Geoffrey; Hensel, Philippe

2006-01-01

Mid Atlantic coastal salt marshes contain a matrix of vegetation diversified by tidal pools, pannes, and creeks, providing habitats of varying importance to many species of breeding, migrating, and wintering waterbirds. We hypothesized that changes in marsh elevation were not sufficient to keep pace with those of sea level in both vegetated and unvegetated Spartina alterniflora sites at a number of mid lagoon marsh areas along the Atlantic coast. We also predicted that northern areas would suffer less of a deficit than would southern sites. Beginning in August 1998, we installed surface elevation tables at study sites on Cape Cod, Massachusetts, southern New Jersey, and two locations along Virginia's eastern shore. We compared these elevation changes over the 4-4.5 yr record with the long-term (> 50 yr) tidal records for each locale. We also collected data on waterbird use of these sites during all seasons of the year, based on ground surveys and replicated surveys from observation platforms. Three patterns of marsh elevation change were found. At Nauset Marsh, Cape Cod, the Spartina marsh surface tracked the pond surface, both keeping pace with regional sea-level rise rates. In New Jersey, the ponds are becoming deeper while marsh surface elevation remains unchanged from the initial reading. This may result in a submergence of the marsh in the future, assuming sea-level rise continues at current rates. Ponds at both Virginia sites are filling in, while marsh surface elevation rates do not seem to be keeping pace with local sea-level rise. An additional finding at all sites was that subsidence in the vegetated marsh surfaces was less than in unvegetated areas, reflecting the importance of the root mat in stabilizing sediments. The implications to migratory waterbirds are significant. Submergence of much of the lagoonal marsh area in Virginia and New Jersey over the next century could have major negative (i.e., flooding) effects on nesting populations of marsh-dependent seaside sparrows Ammodramus maritimus, saltmarsh sharp-tailed sparrows A. caudacutus, black rails Laterallus jamaicensis, clapper rails Rallus longirostris, Forster's terns Sterna forsteri, common terns Sterna hirundo, and gull-billed terns Sterna nilotica. Although short-term inundation of many lagoonal marshes may benefit some open-water feeding ducks, geese, and swans during winter, the long-term ecosystem effects may be detrimental, as wildlife resources will be lost or displaced. With the reduction in area of emergent marsh, estuarine secondary productivity and biotic diversity will also be reduced.

Dispersal and population connectivity in the deep North Atlantic estimated from physical transport processes

NASA Astrophysics Data System (ADS)

Etter, Ron J.; Bower, Amy S.

2015-10-01

Little is known about how larvae disperse in deep ocean currents despite how critical estimates of population connectivity are for ecology, evolution and conservation. Estimates of connectivity can provide important insights about the mechanisms that shape patterns of genetic variation. Strong population genetic divergence above and below about 3000 m has been documented for multiple protobranch bivalves in the western North Atlantic. One possible explanation for this congruent divergence is that the Deep Western Boundary Current (DWBC), which flows southwestward along the slope in this region, entrains larvae and impedes dispersal between the upper/middle slope and the lower slope or abyss. We used Lagrangian particle trajectories based on an eddy-resolving ocean general circulation model (specifically FLAME - Family of Linked Atlantic Model Experiments) to estimate the nature and scale of dispersal of passive larvae released near the sea floor at 4 depths across the continental slope (1500, 2000, 2500 and 3200 m) in the western North Atlantic and to test the potential role of the DWBC in explaining patterns of genetic variation on the continental margin. Passive particles released into the model DWBC followed highly complex trajectories that led to both onshore and offshore transport. Transport averaged about 1 km d-1 with dispersal kernels skewed strongly right indicating that some larvae dispersed much greater distances. Offshore transport was more likely than onshore and, despite a prevailing southwestward flow, some particles drifted north and east. Dispersal trajectories and estimates of population connectivity suggested that the DWBC is unlikely to prevent dispersal among depths, in part because of strong cross-slope forces induced by interactions between the DWBC and the deeper flows of the Gulf Stream. The strong genetic divergence we find in this region of the Northwest Atlantic is therefore likely driven by larval behaviors and/or mortality that limit dispersal, or local selective processes (both pre and post-settlement) that limit recruitment of immigrants from some depths.

Some quantitative indicators of postovulatory aging and its effect on larval and juvenile development of Atlantic salmon (Salmo salar).

PubMed

Mommens, Maren; Storset, Arne; Babiak, Igor

2015-07-01

Modern out-of-season egg production in Atlantic salmon (Salmo salar) increases the risk of postovulatory aging (POA) of oocytes. Postovulatory aging is known to influence oocyte quality in salmonids, but reliable tests for POA are lacking in Atlantic salmon egg production. To address this problem, we have collected oocytes from the same 20 Atlantic salmon females sequentially in approximately 1-week intervals, from the start of ovulation until 28 days postovulation (dpo), to determine the effect of natural retention of matured oocytes in body coelomic cavity on further performance of embryos and juveniles produced from those oocytes. Also, we investigated oocyte water hardening and several coelomic fluid parameters as potential quantitative indicators of POA. Oocyte quality decreased significantly from 22 dpo onward, as inferred from decrease in fertilization success and survival of embryos, alevins, and juveniles and increase in alevin and juvenile deformity rates. The occurrence of head deformities was significantly related to postovulatory age of oocytes. Coelomic fluid pH decreased significantly at 28 dpo and correlated positively with fertilization rates (r = 0.45), normal eyed embryo rates (r = 0.67), and alevin relative survival rates (r = 0.63) and negatively correlated with total alevin deformity rates (r = -0.59). Oocyte weight gain at 60 minutes decreased significantly at 28 dpo and correlated negatively with total alevin deformities and the occurrence of cranial nodules (r = -0.99). Generally, quality of ovulated oocytes remained stable for the first 2 weeks after ovulation. Later on, POA negatively influenced Atlantic salmon embryo, alevin, and juvenile performance. For the first time, we show a long-term effect of POA on salmonid juvenile performance. Standardized pH measurements of coelomic fluid could potentially improve embryo and juvenile production by identifying low-quality oocytes at an early stage during the production. Copyright © 2015 Elsevier Inc. All rights reserved.

Marine ecoregion and Deepwater Horizon oil spill affect recruitment and population structure of a salt marsh snail

USGS Publications Warehouse

Pennings, Steven C.; Zengel, Scott; Oehrig, Jacob; Alber, Merryl; Bishop, T. Dale; Deis, Donald R.; Devlin, Donna; Hughes, A. Randall; Hutchens, John J.; Kiehn, Whitney M.; McFarlin, Caroline R.; Montague, Clay L.; Powers, Sean P.; Proffitt, C. Edward; Rutherford, Nicolle; Stagg, Camille L.; Walters, Keith

2016-01-01

Marine species with planktonic larvae often have high spatial and temporal variation in recruitment that leads to subsequent variation in the ecology of benthic adults. Using a combination of published and unpublished data, we compared the population structure of the salt marsh snail, Littoraria irrorata, between the South Atlantic Bight and the Gulf Coast of the United States to infer geographic differences in recruitment and to test the hypothesis that the Deepwater Horizon oil spill led to widespread recruitment failure of L. irrorata in Louisiana in 2010. Size-frequency distributions in both ecoregions were bimodal, with troughs in the distributions consistent with a transition from sub-adults to adults at ~13 mm in shell length as reported in the literature; however, adult snails reached larger sizes in the Gulf Coast. The ratio of sub-adults to adults was 1.5–2 times greater in the South Atlantic Bight than the Gulf Coast, consistent with higher recruitment rates in the South Atlantic Bight. Higher recruitment rates in the South Atlantic Bight could contribute to higher snail densities and reduced adult growth in this region. The ratio of sub-adults to adults in Louisiana was lower in 2011 than in previous years, and began to recover in 2012–2014, consistent with widespread recruitment failure in 2010, when large expanses of spilled oil were present in coastal waters. Our results reveal an important difference in the ecology of a key salt marsh invertebrate between the two ecoregions, and also suggest that the Deepwater Horizon oil spill may have caused widespread recruitment failure in this species and perhaps others with similar planktonic larval stages.

Effects of 17alpha-methyltestosterone exposure on steroidogenesis and cyclin-B mRNA expression in previtellogenic oocytes of Atlantic cod (Gadus morhua).

PubMed

Kortner, Trond M; Arukwe, Augustine

2007-11-01

Steroid hormone (estrogens and androgens) synthesis and regulation involve a large number of enzymes and potential biochemical pathways. In the context of these biochemical pathways, it is believed that the true rate-limiting step in acute steroid production is the movement of cholesterol across the mitochondrial membrane by the steroidogenic acute regulatory (StAR) protein and the subsequent conversion to pregnenolone by cytochrome P450-mediated side-chain cleavage (P450scc) enzyme. Oocyte development is a complex process that is triggered by the maturation-promoting factor (MPF) involving cyclin-B as a regulatory factor. In the present study, we evaluated the endocrine effects of 17alpha-methyltestosterone (MT) on steroidogenic pathways of Atlantic cod (Gadus morhua), using an in vitro previtellogenic oocyte culture technique that is based on an agarose floating method. Tissue was cultured in a humidified incubator at 10 degrees C for 1, 5, 10 and 20 days with different concentrations of the synthetic androgen MT (0 (control), 1, 10, 100 and 1000 microM) dissolved in ethanol (0.3%). Gene expressions for StAR, P450scc, aromatase-alpha (P450aromA) and cyclin-B were detected using validated real-time PCR with specific primer pairs. Cellular localization of the StAR protein and P450scc were performed using the immunohistochemical technique with antisera prepared against synthetic peptide for both proteins. Steroid hormones (estradiol-17beta: E2 and testosterone: T) levels were estimated using enzyme immunoassay. Our data showed significant concentration-specific increase (at day 1 and 5) and decrease (at day 10 and 20) of the StAR mRNA expression after exposure to MT. P450scc expression showed a MT concentration-specific decrease during the exposure periods and cyclin-B mRNA expression was decreased in MT concentration-dependent manner at days 10 and 20 (reaching almost total inhibition after exposure to 1000 microM MT). MT exposure produced variable effects on the P450aromA mRNA expression that can be described as concentration-specific increase (day 1) and decrease (days 5 and 10). Cellular localization of the StAR protein and P450scc demonstrated their expression mainly in ovarian follicular cells. MT produced an apparent concentration-and time-dependent increase of E2 and T levels. Thus, the present study reveals some novel effects of pharmaceutical endocrine disruptor on the development of previtellogenic oocytes in cod. The impaired steroidogenesis and hormonal imbalance reported in the present study may have potential consequences for the vitellogenic process and overt fecundity in teleosts.

Understanding climate impacts on recruitment and spatial dynamics of Atlantic cod in the Gulf of Maine: Integration of observations and modeling

NASA Astrophysics Data System (ADS)

Runge, Jeffrey A.; Kovach, Adrienne I.; Churchill, James H.; Kerr, Lisa A.; Morrison, John R.; Beardsley, Robert C.; Berlinsky, David L.; Chen, Changsheng; Cadrin, Steven X.; Davis, Cabell S.; Ford, Kathryn H.; Grabowski, Jonathan H.; Howell, W. Huntting; Ji, Rubao; Jones, Rebecca J.; Pershing, Andrew J.; Record, Nicholas R.; Thomas, Andrew C.; Sherwood, Graham D.; Tallack, Shelly M. L.; Townsend, David W.

2010-10-01

We put forward a combined observing and modeling strategy for evaluating effects of environmental forcing on the dynamics of spatially structured cod populations spawning in the western Gulf of Maine. Recent work indicates at least two genetically differentiated complexes in this region: a late spring spawning, coastal population centered in Ipswich Bay, and a population that spawns in winter inshore and on nearshore banks in the Gulf of Maine and off southern New England. The two populations likely differ in trophic interactions and in physiological and behavioral responses to different winter and spring environments. Coupled physical-biological modeling has advanced to the point where within-decade forecasting of environmental conditions for recruitment to each of the two populations is feasible. However, the modeling needs to be supported by hydrographic, primary production and zooplankton data collected by buoys, and by data from remote sensing and fixed station sampling. Forecasts of environmentally driven dispersal and growth of planktonic early life stages, combined with an understanding of possible population-specific predator fields, usage of coastal habitat by juveniles and adult resident and migratory patterns, can be used to develop scenarios for spatially explicit population responses to multiple forcings, including climate change, anthropogenic impacts on nearshore juvenile habitat, connectivity among populations and management interventions such as regional fisheries closures.

Molecular modeling study of CodX reveals importance of N-terminal and C-terminal domain in the CodWX complex structure of Bacillus subtilis.

PubMed

Krishnamoorthy, Navaneethakrishnan; Gajendrarao, Poornima; Eom, Soo Hyun; Kwon, Yong Jung; Cheong, Gang-Won; Lee, Keun Woo

2008-08-01

In Bacillus subtilis, CodW peptidase and CodX ATPase function together as a distinctive ATP-dependent protease called CodWX, which participates in protein degradation and regulates cell division. The molecular structure of CodX and the assembly structure of CodW-CodX have not yet been resolved. Here we present the first three-dimensional structure of CodX N-terminal (N) and C-terminal (C) domain including possible structure of intermediate (I) domain based on the crystal structure of homologous Escherichia coli HslU ATPase. Moreover, the biologically relevant CodWX (W(6)W(6)X(6)) octadecamer complex structure was constructed using the recently identified CodW-HslU hybrid crystal structure. Molecular dynamics (MD) simulation shows a reasonably stable structure of modeled CodWX and explicit behavior of key segments in CodX N and C domain: nucleotide binding residues, GYVG pore motif and CodW-CodX interface. Predicted structure of the possible I domain is flexible in nature with highly coiled hydrophobic region (M153-M206) that could favor substrate binding and entry. Electrostatic surface potential observation unveiled charge complementarity based CodW-CodX interaction pattern could be a possible native interaction pattern in the interface of CodWX. CodX GYVG pore motif structural features, flexible nature of glycine (G92 and G95) residues and aromatic ring conformation preserved Y93 indicated that it may follow the similar mode during the proteolysis mechanism as in the HslU closed state. This molecular modeling study uncovers the significance of CodX N and C domain in CodWX complex and provides possible explanations which would be helpful to understand the CodWX-dependent proteolysis mechanism of B. subtilis.

Impact of the North Atlantic Oscillation on the trans-Atlantic migrations of the European eel (Anguilla anguilla)

NASA Astrophysics Data System (ADS)

Kettle, A. James; Bakker, Dorothee C. E.; Haines, Keith

2008-09-01

Glass eel catches and FAO (Food and Agricultural Organization) landings of the European freshwater eel (Anguilla anguilla) show a decrease over the past 20 years. The long-term trends in the time series mask an interannual fluctuation, which becomes apparent on the application of a high-pass filter and autocorrelation analysis. Both the FAO landings and the glass eel catches show interannual fluctuations with a repeat period of 6-8 years, similar to the period of the North Atlantic Oscillation (NAO). Most glass eel catch monitoring stations are in phase. The glass eel catches show a significant negative correlation with the NAO lagged by 0-2 years, consistent with the hypothesis that the positive NAO phase has an adverse impact on the larval survival in and migration from the Sargasso Sea spawning location, one year prior to the arrival of the glass eels in Europe and North Africa. The FAO landings can be divided into two groups of different phase that have an approximate correspondence to the NAO dipole in winter rainfall in Europe and North Africa. One group (P) comprises Denmark, Ireland, Morocco, Netherlands, Norway, Sweden, Tunisia, and the United Kingdom, and the other group (N) comprises France, Germany, Italy, Poland, Portugal, Spain, and Turkey. At least for the interannual fluctuations, the success of the glass eel fishery (and eel recruitment) may be coupled with the number of migrating silver eels from the N group of countries and uncoupled with the P group of countries.

Warming shelf seas drive the subtropicalization of European pelagic fish communities.

PubMed

Montero-Serra, Ignasi; Edwards, Martin; Genner, Martin J

2015-01-01

Pelagic fishes are among the most ecologically and economically important fish species in European seas. In principle, these pelagic fishes have potential to demonstrate rapid abundance and distribution shifts in response to climatic variability due to their high adult motility, planktonic larval stages, and low dependence on benthic habitat for food or shelter during their life histories. Here, we provide evidence of substantial climate-driven changes to the structure of pelagic fish communities in European shelf seas. We investigated the patterns of species-level change using catch records from 57,870 fisheries-independent survey trawls from across European continental shelf region between 1965 and 2012. We analysed changes in the distribution and rate of occurrence of the six most common species, and observed a strong subtropicalization of the North Sea and Baltic Sea assemblages. These areas have shifted away from cold-water assemblages typically characterized by Atlantic herring and European sprat from the 1960s to 1980s, to warmer-water assemblages including Atlantic mackerel, Atlantic horse mackerel, European pilchard and European anchovy from the 1990s onwards. We next investigated if warming sea temperatures have forced these changes using temporally comprehensive data from the North Sea region. Our models indicated the primary driver of change in these species has been sea surface temperatures in all cases. Together, these analyses highlight how individual species responses have combined to result in a dramatic subtropicalization of the pelagic fish assemblage of the European continental shelf. © 2014 John Wiley & Sons Ltd.

Fine-scale population dynamics in a marine fish species inferred from dynamic state-space models.

PubMed

Rogers, Lauren A; Storvik, Geir O; Knutsen, Halvor; Olsen, Esben M; Stenseth, Nils C

2017-07-01

Identifying the spatial scale of population structuring is critical for the conservation of natural populations and for drawing accurate ecological inferences. However, population studies often use spatially aggregated data to draw inferences about population trends and drivers, potentially masking ecologically relevant population sub-structure and dynamics. The goals of this study were to investigate how population dynamics models with and without spatial structure affect inferences on population trends and the identification of intrinsic drivers of population dynamics (e.g. density dependence). Specifically, we developed dynamic, age-structured, state-space models to test different hypotheses regarding the spatial structure of a population complex of coastal Atlantic cod (Gadus morhua). Data were from a 93-year survey of juvenile (age 0 and 1) cod sampled along >200 km of the Norwegian Skagerrak coast. We compared two models: one which assumes all sampled cod belong to one larger population, and a second which assumes that each fjord contains a unique population with locally determined dynamics. Using the best supported model, we then reconstructed the historical spatial and temporal dynamics of Skagerrak coastal cod. Cross-validation showed that the spatially structured model with local dynamics had better predictive ability. Furthermore, posterior predictive checks showed that a model which assumes one homogeneous population failed to capture the spatial correlation pattern present in the survey data. The spatially structured model indicated that population trends differed markedly among fjords, as did estimates of population parameters including density-dependent survival. Recent biomass was estimated to be at a near-record low all along the coast, but the finer scale model indicated that the decline occurred at different times in different regions. Warm temperatures were associated with poor recruitment, but local changes in habitat and fishing pressure may have played a role in driving local dynamics. More generally, we demonstrated how state-space models can be used to test evidence for population spatial structure based on survey time-series data. Our study shows the importance of considering spatially structured dynamics, as the inferences from such an approach can lead to a different ecological understanding of the drivers of population declines, and fundamentally different management actions to restore populations. © 2017 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.

Regional changes in vertebra morphology during ontogeny reflect the life history of Atlantic cod (Gadus morhua L.)

PubMed Central

Fjelldal, Per G; Totland, Geir K; Hansen, Tom; Kryvi, Harald; Wang, Xiyuan; Søndergaard, Jens L; Grotmol, Sindre

2013-01-01

This study examined vertebra formation, morphology, regional characters, and bending properties of the vertebral column of Atlantic cod throughout its life cycle (0–6 years). The first structure to form was the foremost neural arch, 21 days post hatching (dph), and the first vertebra centrum to form – as a chordacentrum – was the 3rd centrum at 28 dph. Thereafter, the notochord centra developed in a regular sequence towards the head and caudal fin. All vertebrae were formed within 50 dph. The vertebral column consisted of 52 (± 2) vertebrae (V) and could be divided into four distinct regions: (i) the cervical region (neck) (V1 and V2), characterized by short vertebra centra, prominent neural spines and absence of articulations with ribs; (ii) the abdominal region (trunk) (V3–V19), characterized by vertebrae with wing-shaped transverse processes (parapophyses) that all articulate with a rib; (iii) the caudal region (tail) (V20–V40), where the vertebra centra have haemal arches with prominent haemal spines; (iv) the ural region (V41 to the last vertebra), characterized by broad neural and haemal spines, providing sites of origin for muscles inserting on the fin rays – lepidotrichs – of the tail fin. The number of vertebrae in the cervical, abdominal and caudal regions was found to be constant, whereas in the ural region, numbers varied from 12 to 15. Geometric modelling based on combination of vertebra lengths, diameters and intervertebral distances showed an even flexibility throughout the column, except in the ural region, where flexibility increased. Throughout ontogeny, the vertebra centra of the different regions followed distinct patterns of growth; the relative length of the vertebrae increased in the cervical and abdominal regions, and decreased in the caudal and ural regions with increasing age. This may reflect changes in swimming mode with age, and/or that the production of large volumes of gametes during sexual maturation requires a significant increase in abdominal cavity volume. PMID:23587057

Metabolic Depression in Cunner (Tautogolabrus adspersus) Is Influenced by Ontogeny, and Enhances Thermal Tolerance

PubMed Central

Nash, Gordon W.; Gamperl, A. Kurt

2014-01-01

To examine the effect of ontogeny on metabolic depression in the cunner (Tautogolabrus adspersus), and to understand how ontogeny and the ability to metabolically depress influence this species' upper thermal tolerance: 1) the metabolic rate of 9°C-acclimated cunner of three size classes [0.2–0.5 g, young of the year (YOY); 3–6 g, small; and 80–120 g, large (adult)] was measured during a 2°C per day decrease in temperature; and 2) the metabolic response of the same three size classes of cunner to an acute thermal challenge [2°C h−1 from 10°C until Critical Thermal Maximum, CTMax] was examined, and compared to that of the Atlantic cod (Gadus morhua). The onset-temperature for metabolic depression in cunner increased with body size, i.e. from 5°C in YOY cunner to 7°C in adults. In contrast, the extent of metabolic depression was ∼80% (Q10 = ∼15) for YOY fish, ∼65% (Q10 = ∼8) for small fish and ∼55% (Q10 = ∼5) for adults, and this resulted in the metabolic scaling exponent (b) gradually increasing from 0.84 to 0.92 between 9°C to 1°C. All size classes of cunner had significantly (approximately 60%) lower routine metabolic rates at 10°C than Atlantic cod. However, there was no species' difference in the temperature-induced maximum metabolic rate, and this resulted in factorial metabolic scope values that were more than two-fold greater for cunner, and CTMax values that were 6–9°C higher (∼21 vs. 28°C). These results: 1) show that ontogeny influences the temperature of initiation and the extent of metabolic depression in cunner, but not O2 consumption when in a hypometabolic state; and 2) suggest that the evolution of cold-induced metabolic depression in this northern wrasse species has not resulted in a trade-off with upper thermal tolerance, but instead, an enhancement of this species' metabolic plasticity. PMID:25514755

Metabolic depression in cunner (Tautogolabrus adspersus) is influenced by ontogeny, and enhances thermal tolerance.

PubMed

Kelly, Nick I; Alzaid, Abdullah; Nash, Gordon W; Gamperl, A Kurt

2014-01-01

To examine the effect of ontogeny on metabolic depression in the cunner (Tautogolabrus adspersus), and to understand how ontogeny and the ability to metabolically depress influence this species' upper thermal tolerance: 1) the metabolic rate of 9°C-acclimated cunner of three size classes [0.2-0.5 g, young of the year (YOY); 3-6 g, small; and 80-120 g, large (adult)] was measured during a 2°C per day decrease in temperature; and 2) the metabolic response of the same three size classes of cunner to an acute thermal challenge [2°C h(-1) from 10°C until Critical Thermal Maximum, CTMax] was examined, and compared to that of the Atlantic cod (Gadus morhua). The onset-temperature for metabolic depression in cunner increased with body size, i.e. from 5°C in YOY cunner to 7°C in adults. In contrast, the extent of metabolic depression was ∼80% (Q10 = ∼15) for YOY fish, ∼65% (Q10 = ∼8) for small fish and ∼55% (Q10 = ∼5) for adults, and this resulted in the metabolic scaling exponent (b) gradually increasing from 0.84 to 0.92 between 9°C to 1°C. All size classes of cunner had significantly (approximately 60%) lower routine metabolic rates at 10°C than Atlantic cod. However, there was no species' difference in the temperature-induced maximum metabolic rate, and this resulted in factorial metabolic scope values that were more than two-fold greater for cunner, and CTMax values that were 6-9°C higher (∼21 vs. 28°C). These results: 1) show that ontogeny influences the temperature of initiation and the extent of metabolic depression in cunner, but not O2 consumption when in a hypometabolic state; and 2) suggest that the evolution of cold-induced metabolic depression in this northern wrasse species has not resulted in a trade-off with upper thermal tolerance, but instead, an enhancement of this species' metabolic plasticity.

Spatial and temporal changes in the Barents Sea pelagic compartment during the recent warming

NASA Astrophysics Data System (ADS)

Eriksen, Elena; Skjoldal, Hein Rune; Gjøsæter, Harald; Primicerio, Raul

2017-02-01

The Barents Sea has experienced substantial warming over the last few decades with expansion of relatively warm Atlantic water and reduction in sea ice. Based on a review of relevant literature and additional analyses, we report changes in the pelagic compartment associated with this warming using data from autumn surveys (acoustic capelin, 0-group fish, and ecosystem surveys). We estimated biomass for 25 components of the pelagic community, including macroplankton, 0-group fish, and juvenile and adult pelagic fish, were examined for spatial and temporal variation over the period 1993-2013. The estimated total biomass of the investigated pelagic compartment, not including mesozooplankton, ranged between about 6 and 30 million tonnes wet weight with an average of 17 million tonnes over the 21-years period. Krill was the dominant biomass component (63%), whereas pelagic fish (capelin, polar cod and herring) made up 26% and 0-group fish 11% of the biomass on average. The spatial distribution of biomass showed a broad-scale pattern reflecting differences in distribution of the main pelagic fishes (capelin in the north, polar cod in the east, and herring in the south) and transport of krill and 0-group fish with the Atlantic water flowing into the southern Barents Sea. Dividing the Barents Sea into six regions, the highest average biomass values were found in the Southwestern and South-Central subareas (about 4 million tonnes in each), with krill as the main component. Biomass was also high in the North-Central subarea (about 3 million tonnes) where capelin was the major contributor. The total estimated biomass of the pelagic compartment remained relatively stable during each of two main periods (before and after 2004), but increased by a factor of two from around 11 million tonnes in the first to around 23 million tonnes in the last period. The pronounced increase reflected the warming between the relatively cold 1990s and the warmer 2000s and was driven mainly by an increase in krill due presumably to increased advection. Variable recruitment of fish had a strong influence on the variation in pelagic biomass, first as 0-group fish (including demersal species such as cod and haddock) and subsequently over the next years manifested as strong or weak year classes of dominant pelagic species. Associated with the warming there was also a northern or eastern extension of the distribution of several components although the broad-scale geographical pattern of biomass distribution remained similar between the first and the last parts of the investigated period. The capelin stock, a dominant species with a substantial contribution to total biomass, experienced two collapses followed by recoveries in the 1990s and 2000s. The apparent stability in total biomass in each of the two periods (before and after 2004) reflected compensating and dampening mechanisms. In the first period, krill showed an inverse relationship with capelin, increasing when the capelin stock was low. In the second period, other fishes including juvenile herring, polar cod and blue whiting increased to fill the 'void' of the low capelin stock. The syntheses reported here provides a basis for modelling some of the key players and dominating processes and drivers of change in the ecosystem.

Estimating optically-thin cirrus cloud induced cold bias on infrared radiometric satellite sea surface temperature retrieval in the tropics

NASA Astrophysics Data System (ADS)

Marquis, Jared Wayne

Passive longwave infrared radiometric satellite-based retrievals of sea surface temperature (SST) at instrument nadir are investigated for cold bias caused by unscreened optically-thin cirrus (OTC) clouds (cloud optical depth ≤ 0.3; COD). Level 2 split-window SST retrievals over tropical oceans (30° S - 30° N) from Moderate Resolution Imaging Spectroradiometer (MODIS) radiances collected aboard the NASA Aqua satellite (Aqua-MODIS) are collocated with cloud profiles from the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) instrument, mounted on the independent NASA CALIPSO satellite. OTC are present in approximately 25% of tropical quality-assured (QA) Aqua-MODIS Level-2 data, representing over 99% of all contaminating cirrus found. This results in cold-biased SST retrievals using either split- (MODIS, AVHRR and VIIRS) or triple-window (AVHRR and VIIRS only) retrieval methods. SST retrievals are modeled based on operational algorithms using radiative transfer model simulations conducted with a hypothetical 1.5 km thick OTC cloud placed incrementally from 10.0 - 18.0 km above mean sea level for cloud optical depths (COD) between 0.0 - 0.3. Corresponding cold bias estimates for each sensor are estimated using relative Aqua-MODIS cloud contamination frequencies as a function of cloud top height and COD (assuming them consistent across each platform) integrated within each corresponding modeled cold bias matrix. Split-window relative OTC cold biases, for any single observation, range from 0.40° - 0.49° C for the three sensors, with an absolute (bulk mean) bias between 0.10° - 0.13° C. Triple-window retrievals are more resilient, ranging from 0.03° - 0.04° C relative and 0.11° - 0.16° C absolute. Cold biases are constant across the Pacific and Indian Ocean domains. Absolute bias is smaller over the Atlantic, but relative bias is larger due to different cloud properties indicating that this issue persists globally.

Acoustically detected year-round presence of right whales in an urbanized migration corridor.

PubMed

Morano, Janelle L; Rice, Aaron N; Tielens, Jamey T; Estabrook, Bobbi J; Murray, Anita; Roberts, Bethany L; Clark, Christopher W

2012-08-01

Species' conservation relies on understanding their seasonal habitats and migration routes. North Atlantic right whales (Eubalaena glacialis), listed as endangered under the U.S. Endangered Species Act, migrate from the southeastern U.S. coast to Cape Cod Bay, Massachusetts, a federally designated critical habitat, from February through May to feed. The whales then continue north across the Gulf of Maine to northern waters (e.g., Bay of Fundy). To enter Cape Cod Bay, right whales must traverse an area of dense shipping and fishing activity in Massachusetts Bay, where there are no mandatory regulations for the protection of right whales or management of their habitat. We used passive acoustic recordings of right whales collected in Massachusetts Bay from May 2007 through October 2010 to determine the annual spatial and temporal distribution of the whales and their calling activity. We detected right whales in the bay throughout the year, in contrast to results from visual surveys. Right whales were detected on at least 24% of days in each month, with the exception of June 2007, in which there were no detections. Averaged over all years, right whale calls were most abundant from February through May. During this period, calls were most frequent between 17:00 and 20:00 local time; no diel pattern was apparent in other months. The spatial distribution of the approximate locations of calling whales suggests they may use Massachusetts Bay as a conduit to Cape Cod Bay in the spring and as they move between the Gulf of Maine and waters to the south in September through December. Although it is unclear how dependent right whales are on the bay, the discovery of their widespread presence in Massachusetts Bay throughout the year suggests this region may need to be managed to reduce the probability of collisions with ships and entanglement in fishing gear. ©2012 Society for Conservation Biology.

Climate influence on Baltic cod, sprat, and herring stock-recruitment relationships

NASA Astrophysics Data System (ADS)

Margonski, Piotr; Hansson, Sture; Tomczak, Maciej T.; Grzebielec, Ryszard

2010-10-01

A wide range of possible recruitment drivers were tested for key exploited fish species in the Baltic Sea Regional Advisory Council (RAC) area: Eastern Baltic Cod, Central Baltic Herring, Gulf of Riga Herring, and sprat. For each of the stocks, two hypotheses were tested: (i) recruitment is significantly related to spawning stock biomass, climatic forcing, and feeding conditions and (ii) by acknowledging these drivers, management decisions can be improved. Climate impact expressed by climatic indices or changes in water temperature was included in all the final models. Recruitment of the herring stock appeared to be influenced by different factors: the spawning stock biomass, winter Baltic Sea Index prior to spawning, and potentially the November-December sea surface temperature during the winter after spawning were important to Gulf of Riga Herring, while the final models for Central Baltic Herring included spawning stock biomass and August sea surface temperature. Recruitment of sprat appeared to be influenced by July-August temperature, but was independent of the spawning biomass when SSB > 200,000 tons. Recruitment of Eastern Baltic Cod was significantly related to spawning stock biomass, the winter North Atlantic Oscillation index, and the reproductive volume in the Gotland Basin in May. All the models including extrinsic factors significantly improved prediction ability as compared to traditional models, which account for impacts of the spawning stock biomass alone. Based on the final models the minimum spawning stock biomass to derive the associated minimum recruitment under average environmental conditions was calculated for each stock. Using uncertainty analyses, the spawning stock biomass required to produce associated minimum recruitment was presented with different probabilities considering the influence of the extrinsic drivers. This tool allows for recruitment to be predicted with a required probability, that is, higher than the average 50% estimated from the models. Further, this approach considers unfavorable environmental conditions which mean that a higher spawning stock biomass is needed to maintain recruitment at a required level.

Molecular architecture of the ATP-dependent CodWX protease having an N-terminal serine active site

PubMed Central

Kang, Min Suk; Kim, Soon Rae; Kwack, Pyeongsu; Lim, Byung Kook; Ahn, Sung Won; Rho, Young Min; Seong, Ihn Sik; Park, Seong-Chul; Eom, Soo Hyun; Cheong, Gang-Won; Chung, Chin Ha

2003-01-01

CodWX in Bacillus subtilis is an ATP-dependent, N-terminal serine protease, consisting of CodW peptidase and CodX ATPase. Here we show that CodWX is an alkaline protease and has a distinct molecular architecture. ATP hydrolysis is required for the formation of the CodWX complex and thus for its proteolytic function. Remarkably, CodX has a ‘spool-like’ structure that is formed by interaction of the intermediate domains of two hexameric or heptameric rings. In the CodWX complex, CodW consisting of two stacked hexameric rings (WW) binds to either or both ends of a CodX double ring (XX), forming asymmetric (WWXX) or symmetric cylindrical particles (WWXXWW). CodWX can also form an elongated particle, in which an additional CodX double ring is bound to the symmetric particle (WWXXWWXX). In addition, CodWX is capable of degrading EzrA, an inhibitor of FtsZ ring formation, implicating it in the regulation of cell division. Thus, CodWX appears to constitute a new type of protease that is distinct from other ATP-dependent proteases in its structure and proteolytic mechanism. PMID:12805205

Variability in ambient noise levels and call parameters of North Atlantic right whales in three habitat areas.

PubMed

Parks, Susan E; Urazghildiiev, Ildar; Clark, Christopher W

2009-02-01

The North Atlantic right whale inhabits the coastal waters off the east coasts of the United States and Canada, areas characterized by high levels of shipping and fishing activities. Acoustic communication plays an important role in the social behavior of these whales and increases in low-frequency noise may be leading to changes in their calling behavior. This study characterizes the ambient noise levels, including both natural and anthropogenic sources, and right whale upcall parameters in three right whale habitat areas. Continuous recordings were made seasonally using autonomous bottom-mounted recorders in the Bay of Fundy, Canada (2004, 2005), Cape Cod Bay, (2005, 2006), and off the coast of Georgia (2004-2005, 2006-2007). Consistent interannual trends in noise parameters were found for each habitat area, with both the band level and spectrum level measurements higher in the Bay of Fundy than in the other areas. Measured call parameters varied between habitats and between years within the same habitat area, indicating that habitat area and noise levels alone are not sufficient to predict variability in call parameters. These results suggest that right whales may be responding to the peak frequency of noise, rather than the absolute noise level in their environment.

Status and future perspectives of vaccines for industrialised fin-fish farming.

PubMed

Brudeseth, Bjørn Erik; Wiulsrød, Rune; Fredriksen, Børge Nilsen; Lindmo, Karine; Løkling, Knut-Egil; Bordevik, Marianne; Steine, Nils; Klevan, Are; Gravningen, Kjersti

2013-12-01

Fin fish farming is developing from extensive to intensive high industrial scale production. Production of fish in high-density growth conditions requires effective vaccines in order to control persistent and emerging diseases. Vaccines can also have significant positive impact on the reduced usage of antibiotics. This was demonstrated when vaccines were introduced in Norway for Atlantic salmon (Salmo salar) in the late eighties and early nineties, resulting in a rapid decline of antibiotics consumption. The present review will focus on current vaccine applications for farmed industrialized fish species such as Atlantic salmon, coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), ayu (Plecoglossus altivelis), cod (Gadus morhua), sea bass (Dicentrarchus labrax), gilt-head sea bream (Sparus aurata), yellowtail (Seriola quinqueradiata), great amberjack (Seriola dumerili), barramundi (Lates calcarifer), japanese flounder (Paralichythys olivaceus), turbot (Scophthalmus maximus), red sea bream (Pagrus major), rock bream (Oplegnathus fasciatus), seven band grouper (Epinephelus septemfasciatus), striped catfish (Pangasianodon hypophthalmus), channel catfish (Ictalurus punctatus) and tilapia (Oreochromis niloticus). This paper will review the current use of licensed vaccines in fin fish farming and describe vaccine administration regimes including immersion, oral and injection vaccination. Future trends for inactivated-, live attenuated - and DNA - vaccines will also be discussed. Copyright © 2013 Elsevier Ltd. All rights reserved.

Ichthyoplankton spatial pattern in the inner shelf off Bahía Blanca Estuary, SW Atlantic Ocean

NASA Astrophysics Data System (ADS)

Hoffmeyer, Mónica Susana; Clara, Menéndez María; Florencia, Biancalana; Mabel, Nizovoy Alicia; Ramón, Torres Eduardo

2009-09-01

This study focuses on the composition, abundance and distribution of ichthyoplankton in the inner shelf area off Bahía Blanca Estuary on the SW Atlantic Ocean during late spring. Eggs and larvae of Brevoortia aurea, Engraulis anchoita, Parona signata, Sciaenidae spp. - such as Cynoscion guatucupa and Micropogonias furnieri -, and Odontesthes argentinensis were found. Species richness was low probably as a result of season and shallow depths. Ichthyoplankton abundance reached values close to 10 000 per 10 m -3 (eggs) and 4000 per 10 m -3 (larvae) and displayed a spatial distribution pattern with maximum abundance values restricted to a band parallel to the coast. Differences between egg and larval patterns, probably derived from a different displacement and hydrodynamic behavior, were observed. Egg and larvae distribution patterns were found related with spawning areas and to directly depend on salinity and mesozooplankton. The larvae distribution pattern, in particular, was found to inversely depend on particulate organic carbon. In addition, the geographic location of egg and larvae maxima strongly coincided with a saline front reported for this area in springtime, thus suggesting a direct relationship with it.

Helminth communities of Leptodactylus latrans (Anura: Leptodactylidae) from the Atlantic rainforest, south-eastern Brazil.

PubMed

Toledo, G M; Morais, D H; Silva, R J; Anjos, L A

2015-03-01

The helminth fauna associated with Leptodactylus latrans, a large frog living in a disturbed environment of Atlantic rainforest in south-eastern Brazil, was evaluated. We found eight helminth taxa, including five nematode species, Falcaustra mascula, Oswaldocruzia subauricularis, Physaloptera sp., Rhabdias sp. and an unidentified cosmocercid, two trematodes, Gorgoderina parvicava and Haematoloechus fuelleborni, and one larval cestode. The overall prevalence of infection was 63.2% with a mean intensity of 11.3 ± 3.8. The cosmocercid nematode and O. subauricularis showed the highest prevalences, although the trematode G. parvicava was the most abundant and dominant parasite species. Host size positively influenced both the intensity of infection and parasite species richness. Our data suggest that the juvenile individuals of L. latrans are more susceptible to parasitic infection than the adults. The comparison of the similarity of this community component with that found in other studies in South America shows that, as well as the characteristics of the host, the sampling area also influences the parasitic fauna. Therefore, the results of this study agree that the helminth communities of frogs have relatively low species richness and dominance of generalist species.

Genetic homogeneity in the deep-sea grenadier Macrourus berglax across the North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Coscia, Ilaria; Castilho, Rita; Massa-Gallucci, Alexia; Sacchi, Carlotta; Cunha, Regina L.; Stefanni, Sergio; Helyar, Sarah J.; Knutsen, Halvor; Mariani, Stefano

2018-02-01

Paucity of data on population structure and connectivity in deep sea species remains a major obstacle to their sustainable management and conservation in the face of ever increasing fisheries pressure and other forms of impacts on deep sea ecosystems. The roughhead grenadier Macrourus berglax presents all the classical characteristics of a deep sea species, such as slow growth and low fecundity, which make them particularly vulnerable to anthropogenic impact, due to their low resilience to change. In this study, the population structure of the roughhead grenadier is investigated throughout its geographic distribution using two sets of molecular markers: a partial sequence of the Control Region of mitochondrial DNA and species-specific microsatellites. No evidence of significant structure was found throughout the North Atlantic, with both sets of molecular markers yielding the same results of overall homogeneity. We posit two non-mutually exclusive scenarios that can explain such outcome: i) substantial high gene flow among locations, possibly maintained by larval stages, ii) very large effective size of post-glacially expanded populations. The results can inform management strategies in this by-caught species, and contribute to the broader issue of biological connectivity in the deep ocean.

Larval and juvenile Pacific herring Clupea pallasii are not susceptible to infectious hematopoietic necrosis under laboratory conditions

USGS Publications Warehouse

Hart, L.M.; Traxler, G.S.; Garver, K.A.; Richard, J.; Gregg, J.L.; Grady, C.A.; Kurath, G.; Hershberger, P.K.

2011-01-01

Infectious hematopoietic necrosis (IHN) leads to periodic epidemics among certain wild and farmed fish species of the Northeast (NE) Pacific. The source of the IHN virus (IHNV) that initiates these outbreaks remains unknown; however, a leading hypothesis involves viral persistence in marine host species such as Pacific herring Clupea pallasii. Under laboratory conditions we exposed specific pathogen-free (SPF) larval and juvenile Pacific herring to 103 to 104 plaque-forming units (pfu) of IHNV ml–1 by waterborne immersion. Cumulative mortalities among exposed groups were not significantly different from those of negative control groups. After waterborne exposure, IHNV was transiently recovered from the tissues of larvae but absent in tissues of juveniles. Additionally, no evidence of viral shedding was detected in the tank water containing exposed juveniles. After intraperitoneal (IP) injection of IHNV in juvenile herring with 103 pfu, IHNV was recovered from the tissues of sub-sampled individuals for only the first 5 d post-exposure. The lack of susceptibility to overt disease and transient levels of IHNV in the tissues of exposed fish indicate that Pacific herring do not likely serve a major epizootiological role in perpetuation of IHNV among free-ranging sockeye salmon Oncorhynchus nerka and farmed Atlantic salmon Salmo salar in the NE Pacific.

Effect of influent COD/SO4(2-) ratios on UASB treatment of a synthetic sulfate-containing wastewater.

PubMed

Hu, Yong; Jing, Zhaoqian; Sudo, Yuta; Niu, Qigui; Du, Jingru; Wu, Jiang; Li, Yu-You

2015-07-01

The effect of the chemical oxygen demand/sulfate (COD/SO4(2-)) ratio on the anaerobic treatment of synthetic chemical wastewater containing acetate, ethanol, and sulfate, was investigated using a UASB reactor. The experimental results show that at a COD/SO4(2-) ratio of 20 and a COD loading rate of 25.2gCODL(-1)d(-1), a COD removal of as high as 87.8% was maintained. At a COD/SO4(2-) ratio of 0.5 (sulfate concentration 6000mgL(-1)), however, the COD removal was 79.2% and the methane yield was 0.20LCH4gCOD(-1). The conversion of influent COD to methane dropped from 80.5% to 54.4% as the COD/SO4(2-) ratio decreased from 20 to 0.5. At all the COD/SO4(2-) ratios applied, over 79.4% of the total electron flow was utilized by methane-producing archaea (MPA), indicating that methane fermentation was the predominant reaction. The majority of the methane was produced by acetoclastic MPA at high COD/SO4(2-) ratios and both acetoclastic and hydrogenthrophic MPA at low COD/SO4(2-) ratios. Only at low COD/SO4(2-) ratios were SRB species such as Desulfovibrio found to play a key role in ethanol degradation, whereas all the SRB species were found to be incomplete oxidizers at both high and low COD/SO4(2-) ratios. Copyright © 2015 Elsevier Ltd. All rights reserved.

Improved COD Measurements for Organic Content in Flowback Water with High Chloride Concentrations.

PubMed

Cardona, Isabel; Park, Ho Il; Lin, Lian-Shin

2016-03-01

An improved method was used to determine chemical oxygen demand (COD) as a measure of organic content in water samples containing high chloride content. A contour plot of COD percent error in the Cl(-)-Cl(-):COD domain showed that COD errors increased with Cl(-):COD. Substantial errors (>10%) could occur in low Cl(-):COD regions (<300) for samples with low (<10 g/L) and high chloride concentrations (>25 g/L). Applying the method to flowback water samples resulted in COD concentrations ranging in 130 to 1060 mg/L, which were substantially lower than the previously reported values for flowback water samples from Marcellus Shale (228 to 21 900 mg/L). It is likely that overestimations of COD in the previous studies occurred as result of chloride interferences. Pretreatment with mercuric sulfate, and use of a low-strength digestion solution, and the contour plot to correct COD measurements are feasible steps to significantly improve the accuracy of COD measurements.

A modified method for COD determination of solid waste, using a commercial COD kit and an adapted disposable weighing support.

PubMed

André, L; Pauss, A; Ribeiro, T

2017-03-01

The chemical oxygen demand (COD) is an essential parameter in waste management, particularly when monitoring wet anaerobic digestion processes. An adapted method to determine COD was developed for solid waste (total solids >15%). This method used commercial COD tubes and did not require sample dilution. A homemade plastic weighing support was used to transfer the solid sample into COD tubes. Potassium hydrogen phthalate and glucose used as standards showed an excellent repeatability. A small underestimation of the theoretical COD value (standard values around 5% lower than theoretical values) was also observed, mainly due to the intrinsic COD of the weighing support and to measurement uncertainties. The adapted COD method was tested using various solid wastes in the range of 1-8 mg COD , determining the COD of dried and ground cellulose, cattle manure, straw and a mixed-substrate sample. This new adapted method could be used to monitor and design dry anaerobic digestion processes.

Comparison of laboratory-scale thermophilic biofilm and activated sludge processes integrated with a mesophilic activated sludge process.

PubMed

Suvilampi, J; Lehtomäki, A; Rintala, J

2003-07-01

A combined thermophilic-mesophilic wastewater treatment was studied using a laboratory-scale thermophilic activated sludge process (ASP) followed by mesophilic ASP or a thermophilic suspended carrier biofilm process (SCBP) followed by mesophilic ASP, both systems treating diluted molasses (dilution factor 1:500 corresponding GF/A-filtered COD (COD(filt)) of 1900+/-190 mgl(-1)). With hydraulic retention times (HRTs) of 12-18 h the thermophilic ASP and thermophilic SCBP removed 60+/-13% and 62+/-7% of COD(filt), respectively, with HRT of 8 h the removals were 48+/-1% and 69+/-4%. The sludge volume index (SVI) was notably lower in the thermophilic SCBP (measured from suspended sludge) than in the thermophilic ASP. Under the lowest HRT the mesophilic ASP gave better performance (as SVI, COD(filt), and COD(tot) removals) after the thermophilic SCBP than after the thermophilic ASP. Measured sludge yields were low (less than 0.1 kg suspended solids (SS) kg COD(filt removed)(-1)) in all processes. Both thermophilic treatments removed 80-85% of soluble COD (COD(sol)) whereas suspended COD (COD(susp)) and colloidal COD (COD(col)) were increased. Both mesophilic post-treatments removed all COD(col) and most of the COD(susp) from the thermophilic effluents. In conclusion, combined thermophilic-mesophilic treatment appeared to be easily operable and produced high effluent quality.

78 FR 26117 - Magnuson-Stevens Fishery Conservation and Management Act Provisions; Fisheries of the...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-03

...Through this interim final rule, NMFS announces that it partially approves Framework Adjustment 48 to the NE Multispecies Fishery Management Plan (FMP) and implements the approved measures in the regulations. Framework 48 is the first of two parallel and related actions developed by the New England Fishery Management Council (Council) to respond to updated stock status information and to adjust other management measures in the NE multispecies (groundfish) fishery beginning in fishing year (FY) 2013. This action implements new status determination criteria for Gulf of Maine (GOM) cod, Georges Bank (GB) cod, Southern New England/Mid-Atlantic (SNE/MA) yellowtail flounder, and white hake based on new benchmark assessments completed for these stocks in 2012 and 2013. NMFS is approving and implementing updated status determination criteria for white hake through this interim final rule and accepting further comment on this measure since it was not available for comment in the Framework 48 proposed rule. NMFS will publish a subsequent final rule to respond to any comments received, if necessary. Through this action, NMFS has also approved and is implementing the following Framework 48 measures: Elimination of dockside monitoring requirements for the groundfish fishery; lower minimum fish sizes for several groundfish stocks; clarified goals and performance standard for groundfish monitoring programs; revisions to the allocation of GB yellowtail flounder to the scallop fishery; and establishment of sub-annual catch limits (ACLs) of GB yellowtail flounder and SNE/MA windowpane flounder for the scallop and other non- groundfish fisheries. NMFS also approved revisions to recreational and commercial accountability measures (AMs), including amendments to existing AMs for windowpane flounder, ocean pout, and Atlantic halibut, and new ``reactive'' AMs for Atlantic wolffish and SNE/MA winter flounder, to address a remand by the U.S. District Court of Appeals. NMFS disapproved some measures in Framework 48: A provision for cost- sharing of monitoring costs between the industry and NMFS; a provision to delay industry-funded monitoring to FY 2014; finer scale discard rate strata for GB yellowtail flounder; and a provision to remove requirements for groundfish trawlers to stow their gear when transiting closed areas. Through this interim final rule, NMFS also withdraws a proposed correction to the regulations specific to monitoring of the Eastern U.S./Canada quotas, and will be accepting additional public comment on this issue. These measures are necessary to meet the requirements of the FMP and the Magnuson-Stevens Act, most notably preventing overfishing, ensuring that management measures are based on the best available science, and mitigating, to the extent practicable, potential negative economic impacts from reductions in catch limits anticipated for fishing year FY 2013.

Hindcasting and forecasting of climatology for Gilbert Bay, Labrador: A marine protected area

NASA Astrophysics Data System (ADS)

Best, Sara J.

Gilbert Bay is a marine protected area (MPA) on the southeastern coast of Labrador, Canada. The MPA was created to conserve a genetically distinctive population of Atlantic cod, Gadus morhua. Future climate change in the region is expected to have an impact on the coastal marine environment and local communities in the future. This thesis presents results from a hindcast and forecasts study of physical oceanographic conditions for Gilbert Bay. The first section of this thesis examines the interannual variability in atmospheric and physical oceanographic characteristics of Gilbert Bay over the period 1949-2006. The seasonal and interannual variability of the near surface atmospheric parameters are described. Seawater temperature, salinity and sea-ice thickness in winter are simulated with a physical ocean model, the General Ocean Turbulence Model (GOTM). The results of the hindcast model suggest that the atmospheric interannual variability of the Gilbert Bay region is linked to the North Atlantic Oscillation (NAO). A warming trend observed in the subpolar North Atlantic was influenced by the local climate of coastal Labrador during the recent decade of 1995-2005. The second section of this thesis presents a model forecast of the impact of climate change on the physical conditions within Gilbert Bay over the next century. Climate scenarios from the Intergovernmental Panel on Climate Change (IPCC) Fourth Assessment and the US Climate Change Science Program Project (US CCSP), specifically the Special Report on Emission Scenarios (SRES), were used. Atmospheric parameters and related changes in seawater temperature, salinity and sea-ice thickness in winter for three SRES are simulated with the GOTM, and are then compared to the hindcast study results. The results suggest that the water column during future winters will become warmer in the second half of the 21st century. In the summer the atmosphere will be warmer and more humid. Cloudiness and precipitation are expected to increase. This will have an impact on the vertical stratification of the water column. The surface mixed layer is expected to become warmer, fresher and much shallower than seen in the past. The stratification below the seasonal thermocline will weaken and vertical mixing will intensify. A significant change in surface sea-ice coverage is also suggested by the forecast. Continuing reduction in sea-ice formation during the winter months as highlighted by the hindcast study is expected to affect living conditions of the neighbouring coastal communities around the bay, specifically by increasing the danger of travelling across the bay. A warming Gilbert Bay ecosystem may be favourable for cod growth, but reduced sea-ice formation during the winter months increases the danger of travelling across the bay by snowmobile.

Elucidating the Holocene Relative Sea-Level History of the US Atlantic Coast

NASA Astrophysics Data System (ADS)

Engelhart, S. E.; Anderson, C.; Hill, D.; Horton, B. P.; Peltier, W. R.; van de Plassche, O.; Shennan, I.; Thieler, E. R.; Tornqvist, T. E.

2007-12-01

There is an urgent need for a re-assessment of the quality of Holocene relative sea-level (RSL) observations from the Atlantic and Gulf coasts of the United States. Holocene RSL data provide an essential benchmark to compare against other records of RSL change in the last 100-150 years. Only high quality sea-level data reveal spatial and temporal variations in crustal movements since the Last Glacial Maximum and provide a vital constraint upon dynamical models of the Glacial Isostatic Adjustment (GIA) process. We require an accurate model of the GIA process to inform the global data set currently being produced on the time dependence of the gravitational field of the planet by the Gravity Recovery and Climate Experiment (GRACE). We have compiled database of 1400 possible sea-level index points for the Atlantic coast of the United States. These unvalidated data contain much scatter due to concepts inherent in their original interpretation. They rarely allow for other factors such as sediment compaction and tidal range variation. Following validation, results from Delaware and North Carolina show a rapid rise in RSL from the early to mid Holocene, with no evidence of sea- level above present. They also differ somewhat from GIA model predictions. Rates of RSL change during the late Holocene divide into three broad zones: (1) Maine to Boston, MA ~ RSL rise of less than 1 mm yr-1; (2) Cape Cod, MA to Maryland ~ RSL rise between 1 and 3 mm yr-1; and (3) North Carolina to South Carolina ~ RSL rise less than 1 mm yr-1. Comparison with tide-gauge records demonstrate an increase of at least 1 mm yr-1 at all sites since AD 1900.

Patterns of Diversity of the Rissoidae (Mollusca: Gastropoda) in the Atlantic and the Mediterranean Region

PubMed Central

Ávila, Sérgio P.; Goud, Jeroen; de Frias Martins, António M.

2012-01-01

The geographical distribution of the Rissoidae in the Atlantic Ocean and Mediterranean Sea was compiled and is up-to-date until July 2011. All species were classified according to their mode of larval development (planktotrophic and nonplanktotrophic), and bathymetrical zonation (shallow species—those living between the intertidal and 50 m depth, and deep species—those usually living below 50 m depth). 542 species of Rissoidae are presently reported to the Atlantic Ocean and the Mediterranean Sea, belonging to 33 genera. The Mediterranean Sea is the most diverse site, followed by Canary Islands, Caribbean, Portugal, and Cape Verde. The Mediterranean and Cape Verde Islands are the sites with higher numbers of endemic species, with predominance of Alvania spp. in the first site, and of Alvania and Schwartziella at Cape Verde. In spite of the large number of rissoids at Madeira archipelago, a large number of species are shared with Canaries, Selvagens, and the Azores, thus only about 8% are endemic to the Madeira archipelago. Most of the 542-rissoid species that live in the Atlantic and in the Mediterranean are shallow species (323), 110 are considered as deep species, and 23 species are reported in both shallow and deep waters. There is a predominance of nonplanktotrophs in islands, seamounts, and at high and medium latitudes. This pattern is particularly evident in the genera Crisilla, Manzonia, Onoba, Porosalvania, Schwartziella, and Setia. Planktotrophic species are more abundant in the eastern Atlantic and in the Mediterranean Sea. The results of the analysis of the probable directions of faunal flows support the patterns found by both the Parsimony Analysis of Endemicity and the geographical distribution. Four main source areas for rissoids emerge: Mediterranean, Caribbean, Canaries/Madeira archipelagos, and the Cape Verde archipelago. We must stress the high percentage of endemics that occurs in the isolated islands of Saint Helena, Tristan da Cunha, Cape Verde archipelago and also the Azores, thus reinforcing the legislative protective actions that the local governments have implemented in these islands during the recent years. PMID:22693430

Infant motivation in dental health: attitude without constant reinforcement.

PubMed

Teixeira Alves, Fabiana Bucholdz; Kuhn, Eunice; Bordin, Danielle; Kozlowski, Vitoldo Antonio; Raggio, Daniela Procida; Fadel, Cristina Berger

2014-01-01

Social factors determine the child's behavior and motivation is an important task in the teaching-learning process. This longitudinal and cross-sectional study aimed to analyze the effectiveness of a motivational activity program for oral hygiene habits formation after motivation and without constant reinforcement. The sample was constituted of 26 children (mean 6 years old) from a Public Kindergarten School in Ponta Grossa, PR, Brazil. Data were collected applying a test-chart, with figures reporting the process of dental health/illness. Some figures were considered positive to dental health (dentist/Cod 1, toothbrush/Cod 3, dentifrice/dental floss/Cod 6, fruits/vegetables/Cod 7 and tooth without caries lesion/Cod 8) and negative on dental health (sweets/Cod 2, bacteria/Cod 4, tooth with caries lesion/Cod 5). The figures presentation occurred in three different stages: First stage - figures were presented to children without previous knowledge; second stage - following the motivational presentation, and third stage - 30 days after the first contact. On the first stage, most children select good for the figures considered harmful to their teeth (Cod 2-88%; Cod 4-77% and Cod 5-65%). On the second stage, there was a lower percentage: 23% (P < 0.0001), 8% (P < 0.0001), and 23% (P = 0.0068) related to the Cod 2, 4, and 5. On the third stage, the results showed again an association with the good choice to these figures considered harmful (Cod 2-85%, Cod 4-65% and Cod 5-54%) similar the results obtained on the first stage. The motivational programs performed without constant reinforcement does not have a positive influence in changing the child's behavior related to a better dental care.

Effect of White Charcoal on COD Reduction in Wastewater Treatment

NASA Astrophysics Data System (ADS)

Pijarn, Nuchanaporn; Butsee, Manipa; Buakul, Kanokwan; Seng, Hasan; Sribuarai, Tinnphat; Phonprasert, Pongtep; Taneeto, Kla; Atthameth, Prasertsil

2017-06-01

The objective of this study is to compare the COD reduction in wastewater between using coconut shell and coconut spathe white charcoal from Khlong Wat NongPra-Ong, Krathumbaen, SamutSakhon province, Thailand. The waste water samples were collected using composite sampling method. The experimental section can be divided into 2 parts. The first part was study the optimum of COD adsorption time using both white charcoals. The second part was study the optimum amount of white charcoal for chemical oxygen demand (COD) reduction. The pre-treatment of wastewater was examined in parameters include temperature, alkalinity (pH), conductivity, turbidity, suspended solid (SS), total dissolved solid (TDS), and COD. The results show that both white charcoals can reduce COD of wastewater. The pH of pre-treatment wastewater had pH 9 but post-treatment wastewaters using both white charcoals have pH 8. The COD of pre-treatment wastewater had COD as 258 mg/L but post-treatment wastewater using coconut shell white charcoal had COD steady at 40 mg/L in 30 min and the amount of white charcoals 4 g. The COD of post-treatment wastewater using coconut spathe white charcoal had COD steady at 71 mg/L in 30 min and the amount of white charcoals 4 g. Therefore comparison of COD reduction between coconut shell white charcoal versus coconut spathe white charcoal found that the coconut shell white charcoal had efficiency for COD reduction better than coconut spathe white charcoal.

Biological consequences of interaction of the climatic and event scales of variability in the Eastern Tropical Pacific. [Variations in fish populations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walsh, J.J.

1976-01-01

Temporal changes of the Plymouth herring, Atlanto-Scandian herring, Norweigian cod, New York menhaden, Maine lobster, California sardine, anchovy, and red crab, and Japanese herring and sardine are considered in relation to oscillations of Peruvian anchovy and guano bird populations in response to variations of wind strength, of atmospheric and sea surface temperature anomalies, and of current speed for the Eastern Tropical Pacific. It is suggested that marine communities, either off Peru or throughout the ocean, respond in a similar manner to global oscillations at the climatic and El Nino scales by geographical relocation of their centers of abundance. It ismore » further suggested that these two longer scales of variability are minor perturbations of marine ecosystems in comparison with an interaction of overfishing and natural oscillations at the event scale of variability, i.e., that the failure of most of the world's clupeid fisheries may be linked to imposition of this additional stress and the local perturbations of the larval drift of an organism on a time scale of days to weeks.« less

Performance and Metabolic Demand of a New Repeated-Sprint Ability Test in Basketball Players: Does the Number of Changes of Direction Matter?

PubMed

Zagatto, Alessandro M; Ardigò, Luca P; Barbieri, Fabio A; Milioni, Fabio; Dello Iacono, Antonio; Camargo, Bruno H F; Padulo, Johnny

2017-09-01

Zagatto, AM, Ardigò, LP, Barbieri, FA, Milioni, F, Dello Iacono, A, Camargo, BHF, and Padulo, J. Performance and metabolic demand of a new repeated-sprint ability test in basketball players: does the number of changes of direction matter? J Strength Cond Res 31(9): 2438-2446, 2017-This study compared 2 repeated-sprint ability (RSA) tests in basketball players. Both tests included 10 × 30-m sprints, with the difference that the previously validated test (RSA2COD) featured 2 changes of direction (COD) per sprint, whereas the experimental test (RSA5COD) featured 5 CODs per sprint. Test performances and metabolic demands were specifically assessed in 20 basketball players. First, RSA5COD test-retest reliability was investigated. Then, RSA2COD, RSA5COD sprint times, peak speeds, oxygen uptake (V[Combining Dot Above]O2) and posttest blood lactate concentration [La] were measured. The RSA5COD results showed to be reliable. RSA2COD performance resulted better than the RSA5COD version (p < 0.01), with shorter sprint times and higher peak speeds. Over sprints, the tests did not differ from each other in terms of V[Combining Dot Above]O2 (p > 0.05). Over whole bout, the RSA2COD was more demanding than the RSA5COD, considering overall metabolic power requirement (i.e., VO2-driven + [La]-driven components). Given that RSA5COD (a) mimics real game-play as sprint distance and action change frequency/direction and (b) has the same metabolic expenditure per task completion as metabolic cost, RSA5COD is a valuable option for players and coaches for training basketball-specific agility and assessing bioenergetic demands.

The CodY regulator is essential for virulence in Streptococcus suis serotype 2

PubMed Central

Feng, Liping; Zhu, Jiawen; Chang, Haitao; Gao, Xiaoping; Gao, Cheng; Wei, Xiaofeng; Yuan, Fangyan; Bei, Weicheng

2016-01-01

The main role of CodY, a global regulatory protein in most low G + C gram-positive bacteria, is in transcriptional repression. To study the functions of CodY in Streptococcus suis serotype 2 (S. suis 2), a mutant codY clone named ∆codY was constructed to explore the phenotypic variation between ∆codY and the wild-type strain. The result showed that the codY mutation significantly inhibited cell growth, adherence and invasion ability of S. suis 2 to HEp-2 cells. The codY mutation led to decreased binding of the pathogen to the host cells, easier clearance by RAW264.7 macrophages and decreased growth ability in fresh blood of Cavia porcellus. The codY mutation also attenuated the virulence of S. suis 2 in BALB/c mice. Morphological analysis revealed that the codY mutation decreased the thickness of the capsule of S. suis 2 and changed the surface structures analylized by SDS-PAGE. Finally, the codY mutation altered the expressions of many virulence related genes, including sialic acid synthesis genes, leading to a decreased sialic acid content in capsule. Overall, mutation of codY modulated bacterial virulence by affecting the growth and colonization of S. suis 2, and at least via regulating sialic acid synthesis and capsule thickness. PMID:26883762

77 FR 22611 - Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-16

... DEPARTMENT OF THE INTERIOR National Park Service [1730-SZM] Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA AGENCY: National Park Service, Interior. ACTION... Cod National Seashore, 99 Marconi Site Road, Wellfleet, MA 02667. Dated: April 9, 2012. George E...

Anaerobic treatment of landfill leachate by sulfate reduction.

PubMed

Henry, J G; Prasad, D

2000-01-01

The present study was conducted to investigate the effectiveness of the sulphate-reduction pathway in the anaerobic treatment of landfill leachate. The effects of several COD/SO4 ratios (keeping COD constant) and loadings on anaerobic filter performance were studied and compared with the results from anaerobic filters which followed the methanogenic pathway. Results indicated that the treatability of leachate by sulphate reducing bacteria (SRB) was dependent upon the leachate strength. With high strength leachate (COD = 15,000 mg/L) from the Keele Valley Landfill, it was found that at lower COD/SO4 ratios (< or = 1.6) toxic conditions developed in the system that were more inhibitory to the SRB than to the methane producing bacteria (MPB). As the COD/SO4 ratio increased, methanogenesis predominated. No predominance of SRB occurred at any COD/SO4 ratio with high strength leachate. The highest COD removal achieved was about 70% of which 20% was accomplished by the SRB at a COD/SO4 ratio of 1.6 and an organic loading rate (OLR) of 4 kg COD/m3.d. With low strength leachate (COD = 1500-3300 mg/L) from the Brock West Landfill, and a COD/SO4 ratio < or = 1, SRB became predominant. In these anaerobic filters in which SRB were predominant, the SRB reduced the COD as well as the MPB could. Sulphide inhibition did not take place at any loading in units treating low strength leachate. Consequently, both SRB and MPB should function at COD/SO4 ratios between 1 and 3. About 60% COD removal was achieved at a loading of 2.8 kg COD/m3.d and a COD/SO4 ratio of 1.0. However at a loading of 6 kg COD/m3.d only 27% COD removal was achieved, all of it through the sulphate-reduction pathway. These OLR values are comparable to those applied in systems where methanogenesis was dominant. It was also observed that once the methanogens were established in the units, it was not possible to displace them completely. However, where methanogenesis had not been previously established, it was found that sulphate-reduction could be the sole pathway for COD removal. From this study, it can be concluded that there is no advantage to the sulphate-reduction pathway in the anaerobic treatment of landfill leachate. The other options for increasing the loadings, i.e. the use of high surface/volume filter media (to achieve higher biomass concentrations) or high rate systems are likely to be more successful.

The ups and downs of trophic control in continental shelf ecosystems.

PubMed

Frank, Kenneth T; Petrie, Brian; Shackell, Nancy L

2007-05-01

Traditionally, marine ecosystem structure was thought to be determined by phytoplankton dynamics. However, an integrated view on the relative roles of top-down (consumer-driven) and bottom-up (resource-driven) forcing in large-scale, exploited marine ecosystems is emerging. Long time series of scientific survey data, underpinning the management of commercially exploited species such as cod, are being used to diagnose mechanisms that could affect the composition and relative abundance of species in marine food webs. By assembling published data from studies in exploited North Atlantic ecosystems, we found pronounced geographical variation in top-down and bottom-up trophic forcing. The data suggest that ecosystem susceptibility to top-down control and their resiliency to exploitation are related to species richness and oceanic temperature conditions. Such knowledge could be used to produce ecosystem guidelines to regulate and manage fisheries in a sustainable fashion.

COD::CIF::Parser: an error-correcting CIF parser for the Perl language.

PubMed

Merkys, Andrius; Vaitkus, Antanas; Butkus, Justas; Okulič-Kazarinas, Mykolas; Kairys, Visvaldas; Gražulis, Saulius

2016-02-01

A syntax-correcting CIF parser, COD::CIF::Parser , is presented that can parse CIF 1.1 files and accurately report the position and the nature of the discovered syntactic problems. In addition, the parser is able to automatically fix the most common and the most obvious syntactic deficiencies of the input files. Bindings for Perl, C and Python programming environments are available. Based on COD::CIF::Parser , the cod-tools package for manipulating the CIFs in the Crystallography Open Database (COD) has been developed. The cod-tools package has been successfully used for continuous updates of the data in the automated COD data deposition pipeline, and to check the validity of COD data against the IUCr data validation guidelines. The performance, capabilities and applications of different parsers are compared.

CodY-Dependent Regulation of Sporulation in Clostridium difficile.

PubMed

Nawrocki, Kathryn L; Edwards, Adrianne N; Daou, Nadine; Bouillaut, Laurent; McBride, Shonna M

2016-08-01

Clostridium difficile must form a spore to survive outside the gastrointestinal tract. The factors that trigger sporulation in C. difficile remain poorly understood. Previous studies have suggested that a link exists between nutritional status and sporulation initiation in C. difficile In this study, we investigated the impact of the global nutritional regulator CodY on sporulation in C. difficile strains from the historical 012 ribotype and the current epidemic 027 ribotype. Sporulation frequencies were increased in both backgrounds, demonstrating that CodY represses sporulation in C. difficile The 027 codY mutant exhibited a greater increase in spore formation than the 012 codY mutant. To determine the role of CodY in the observed sporulation phenotypes, we examined several factors that are known to influence sporulation in C. difficile Using transcriptional reporter fusions and quantitative reverse transcription-PCR (qRT-PCR) analysis, we found that two loci associated with the initiation of sporulation, opp and sinR, are regulated by CodY. The data demonstrate that CodY is a repressor of sporulation in C. difficile and that the impact of CodY on sporulation and expression of specific genes is significantly influenced by the strain background. These results suggest that the variability of CodY-dependent regulation is an important contributor to virulence and sporulation in current epidemic isolates. This report provides further evidence that nutritional state, virulence, and sporulation are linked in C. difficile This study sought to examine the relationship between nutrition and sporulation in C. difficile by examining the global nutritional regulator CodY. CodY is a known virulence and nutritional regulator of C. difficile, but its role in sporulation was unknown. Here, we demonstrate that CodY is a negative regulator of sporulation in two different ribotypes of C. difficile We also demonstrate that CodY regulates known effectors of sporulation, Opp and SinR. These results support the idea that nutrient limitation is a trigger for sporulation in C. difficile and that the response to nutrient limitation is coordinated by CodY. Additionally, we demonstrate that CodY has an altered role in sporulation regulation for some strains. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

CodY-Dependent Regulation of Sporulation in Clostridium difficile

PubMed Central

Nawrocki, Kathryn L.; Edwards, Adrianne N.; Daou, Nadine; Bouillaut, Laurent

2016-01-01

ABSTRACT Clostridium difficile must form a spore to survive outside the gastrointestinal tract. The factors that trigger sporulation in C. difficile remain poorly understood. Previous studies have suggested that a link exists between nutritional status and sporulation initiation in C. difficile. In this study, we investigated the impact of the global nutritional regulator CodY on sporulation in C. difficile strains from the historical 012 ribotype and the current epidemic 027 ribotype. Sporulation frequencies were increased in both backgrounds, demonstrating that CodY represses sporulation in C. difficile. The 027 codY mutant exhibited a greater increase in spore formation than the 012 codY mutant. To determine the role of CodY in the observed sporulation phenotypes, we examined several factors that are known to influence sporulation in C. difficile. Using transcriptional reporter fusions and quantitative reverse transcription-PCR (qRT-PCR) analysis, we found that two loci associated with the initiation of sporulation, opp and sinR, are regulated by CodY. The data demonstrate that CodY is a repressor of sporulation in C. difficile and that the impact of CodY on sporulation and expression of specific genes is significantly influenced by the strain background. These results suggest that the variability of CodY-dependent regulation is an important contributor to virulence and sporulation in current epidemic isolates. This report provides further evidence that nutritional state, virulence, and sporulation are linked in C. difficile. IMPORTANCE This study sought to examine the relationship between nutrition and sporulation in C. difficile by examining the global nutritional regulator CodY. CodY is a known virulence and nutritional regulator of C. difficile, but its role in sporulation was unknown. Here, we demonstrate that CodY is a negative regulator of sporulation in two different ribotypes of C. difficile. We also demonstrate that CodY regulates known effectors of sporulation, Opp and SinR. These results support the idea that nutrient limitation is a trigger for sporulation in C. difficile and that the response to nutrient limitation is coordinated by CodY. Additionally, we demonstrate that CodY has an altered role in sporulation regulation for some strains. PMID:27246573

Putting Temperature and Oxygen Thresholds of Marine Animals in Context of Environmental Change: A Regional Perspective for the Scotian Shelf and Gulf of St. Lawrence

PubMed Central

2016-01-01

We conducted a literature review of reported temperature, salinity, pH, depth and oxygen preferences and thresholds of important marine species found in the Gulf of St. Lawrence and Scotian Shelf region. We classified 54 identified fishes and macroinvertebrates as important either because they support a commercial fishery, have threatened or at risk status, or meet one of the following criteria: bycatch, baitfish, invasive, vagrant, important for ecosystem energy transfer, or predators or prey of the above species. The compiled data allow an assessment of species-level impacts including physiological stress and mortality given predictions of future ocean physical and biogeochemical conditions. If an observed, multi-decadal oxygen trend on the central Scotian Shelf continues, a number of species will lose favorable oxygen conditions, experience oxygen-stress, or disappear due to insufficient oxygen in the coming half-century. Projected regional trends and natural variability are both large, and natural variability will act to alternately amplify and dampen anthropogenic changes. When estimates of variability are included with the trend, species encounter unfavourable oxygen conditions decades sooner. Finally, temperature and oxygen thresholds of adult Atlantic wolffish (Anarhichas lupus) and adult Atlantic cod (Gadus morhua) are assessed in the context of a potential future scenario derived from high-resolution ocean models for the central Scotian Shelf. PMID:27997536

Putting Temperature and Oxygen Thresholds of Marine Animals in Context of Environmental Change: A Regional Perspective for the Scotian Shelf and Gulf of St. Lawrence.

PubMed

Brennan, Catherine E; Blanchard, Hannah; Fennel, Katja

2016-01-01

We conducted a literature review of reported temperature, salinity, pH, depth and oxygen preferences and thresholds of important marine species found in the Gulf of St. Lawrence and Scotian Shelf region. We classified 54 identified fishes and macroinvertebrates as important either because they support a commercial fishery, have threatened or at risk status, or meet one of the following criteria: bycatch, baitfish, invasive, vagrant, important for ecosystem energy transfer, or predators or prey of the above species. The compiled data allow an assessment of species-level impacts including physiological stress and mortality given predictions of future ocean physical and biogeochemical conditions. If an observed, multi-decadal oxygen trend on the central Scotian Shelf continues, a number of species will lose favorable oxygen conditions, experience oxygen-stress, or disappear due to insufficient oxygen in the coming half-century. Projected regional trends and natural variability are both large, and natural variability will act to alternately amplify and dampen anthropogenic changes. When estimates of variability are included with the trend, species encounter unfavourable oxygen conditions decades sooner. Finally, temperature and oxygen thresholds of adult Atlantic wolffish (Anarhichas lupus) and adult Atlantic cod (Gadus morhua) are assessed in the context of a potential future scenario derived from high-resolution ocean models for the central Scotian Shelf.

Replacement of chemical oxygen demand (COD) with total organic carbon (TOC) for monitoring wastewater treatment performance to minimize disposal of toxic analytical waste.

PubMed

Dubber, Donata; Gray, Nicholas F

2010-10-01

Chemical oxygen demand (COD) is widely used for wastewater monitoring, design, modeling and plant operational analysis. However this method results in the production of hazardous wastes including mercury and hexavalent chromium. The study examined the replacement of COD with total organic carbon (TOC) for general performance monitoring by comparing their relationship with influent and effluent samples from 11 wastewater treatment plants. Biochemical oxygen demand (BOD5) was also included in the comparison as a control. The results show significant linear relationships between TOC, COD and BOD5 in settled (influent) domestic and municipal wastewaters, but only between COD and TOC in treated effluents. The study concludes that TOC can be reliably used for the generic replacement of both COD (COD=49.2+3.00*TOC) and BOD5 (BOD5=23.7+1.68*TOC) in influent wastewaters but only for COD (COD=7.25+2.99*TOC) in final effluents.

Global ocean conveyor lowers extinction risk in the deep sea

USGS Publications Warehouse

Henry, Lea-Anne; Frank, Norbert; Hebbeln, Dierk; Weinberg, Claudia; Robinson, Laura; van de Flierdt, Tina; Dahl, Mikael; Douarin, Melanie; Morrison, Cheryl L.; Correa, Matthias Lopez; Rogers, Alex D.; Ruckelshausen, Mario; Roberts, J. Murray

2014-01-01

General paradigms of species extinction risk are urgently needed as global habitat loss and rapid climate change threaten Earth with what could be its sixth mass extinction. Using the stony coral Lophelia pertusa as a model organism with the potential for wide larval dispersal, we investigated how the global ocean conveyor drove an unprecedented post-glacial range expansion in Earth׳s largest biome, the deep sea. We compiled a unique ocean-scale dataset of published radiocarbon and uranium-series dates of fossil corals, the sedimentary protactinium–thorium record of Atlantic meridional overturning circulation (AMOC) strength, authigenic neodymium and lead isotopic ratios of circulation pathways, and coral biogeography, and integrated new Bayesian estimates of historic gene flow. Our compilation shows how the export of Southern Ocean and Mediterranean waters after the Younger Dryas 11.6 kyr ago simultaneously triggered two dispersal events in the western and eastern Atlantic respectively. Each pathway injected larvae from refugia into ocean currents powered by a re-invigorated AMOC that led to the fastest postglacial range expansion ever recorded, covering 7500 km in under 400 years. In addition to its role in modulating global climate, our study illuminates how the ocean conveyor creates broad geographic ranges that lower extinction risk in the deep sea.

Global ocean conveyor lowers extinction risk in the deep sea

NASA Astrophysics Data System (ADS)

Henry, Lea-Anne; Frank, Norbert; Hebbeln, Dierk; Wienberg, Claudia; Robinson, Laura; van de Flierdt, Tina; Dahl, Mikael; Douarin, Mélanie; Morrison, Cheryl L.; López Correa, Matthias; Rogers, Alex D.; Ruckelshausen, Mario; Roberts, J. Murray

2014-06-01

General paradigms of species extinction risk are urgently needed as global habitat loss and rapid climate change threaten Earth with what could be its sixth mass extinction. Using the stony coral Lophelia pertusa as a model organism with the potential for wide larval dispersal, we investigated how the global ocean conveyor drove an unprecedented post-glacial range expansion in Earth's largest biome, the deep sea. We compiled a unique ocean-scale dataset of published radiocarbon and uranium-series dates of fossil corals, the sedimentary protactinium-thorium record of Atlantic meridional overturning circulation (AMOC) strength, authigenic neodymium and lead isotopic ratios of circulation pathways, and coral biogeography, and integrated new Bayesian estimates of historic gene flow. Our compilation shows how the export of Southern Ocean and Mediterranean waters after the Younger Dryas 11.6 kyr ago simultaneously triggered two dispersal events in the western and eastern Atlantic respectively. Each pathway injected larvae from refugia into ocean currents powered by a re-invigorated AMOC that led to the fastest postglacial range expansion ever recorded, covering 7500 km in under 400 years. In addition to its role in modulating global climate, our study illuminates how the ocean conveyor creates broad geographic ranges that lower extinction risk in the deep sea.

Marine parasites as biological tags in South American Atlantic waters, current status and perspectives.

PubMed

Cantatore, D M P; Timi, J T

2015-01-01

Many marine fisheries in South American Atlantic coasts (SAAC) are threatened by overfishing and under serious risk of collapsing. The SAAC comprises a diversity of environments, possesses a complex oceanography and harbours a vast biodiversity that provide an enormous potential for using parasites as biological tags for fish stock delineation, a prerequisite for the implementation of control and management plans. Here, their use in the SAAC is reviewed. Main evidence is derived from northern Argentine waters, where fish parasite assemblages are dominated by larval helminth species that share a low specificity, long persistence and trophic transmission, parasitizing almost indiscriminately all available fish species. The advantages and constraints of such a combination of characteristics are analysed and recommendations are given for future research. Shifting the focus from fish/parasite populations to communities allows expanding the concept of biological tags from local to regional scales, providing essential information to delineate ecosystem boundaries for host communities. This new concept arose as a powerful tool to help the implementation of ecosystem-based approaches to fisheries management, the new paradigm for fisheries science. Holistic approaches, including parasites as biological tags for stock delineation will render valuable information to help insure fisheries and marine ecosystems against further depletion and collapse.

Saduria entomon infected with Hysterothylacium aduncum found in situ in the stomach of cod (Gadus morhua) from the Baltic Sea.

PubMed

Pawlak, J; Nadolna-Ałtyn, K; Szostakowska, B; Pachur, M; Podolska, M

2017-10-12

The parasite fauna of cod (Gadus morhus) is well described, but the life cycles of Baltic cod parasites are known only in general terms. Invertebrates commonly found in the stomach of cod are recognized as intermediate hosts in the life cycles of nematodes or acanthocephalans. The aim of this study was to determine the source of infection of Baltic cod with parasites found in situ in invertebrates present in the cod stomach. Our results indicate that Saduria entomon is both a source of infection of Baltic cod with parasites and an intermediate host in the life cycle of Hysterothylacium aduncum in the Baltic Sea.

Application of microbial electrolysis cells to treat spent yeast from an alcoholic fermentation.

PubMed

Sosa-Hernández, Ornella; Popat, Sudeep C; Parameswaran, Prathap; Alemán-Nava, Gibrán Sidney; Torres, César I; Buitrón, Germán; Parra-Saldívar, Roberto

2016-01-01

Spent yeast (SY), a major challenge for the brewing industry, was treated using a microbial electrolysis cell to recover energy. Concentrations of SY from bench alcoholic fermentation and ethanol were tested, ranging from 750 to 1500mgCOD/L and 0 to 2400mgCOD/L respectively. COD removal efficiency (RE), coulombic efficiency (CE), coulombic recovery (CR), hydrogen production and current density were evaluated. The best treatment condition was 750mgCOD/LSY+1200mgCOD/L ethanol giving higher COD RE, CE, CR (90±1%, 90±2% and 81±1% respectively), as compared with 1500mgCOD/LSY (76±2%, 63±7% and 48±4% respectively); ethanol addition was significantly favorable (p value=0.011), possibly due to electron availability and SY autolysis. 1500mgCOD/LSY+1200mgCOD/L ethanol achieved higher current density (222.0±31.3A/m(3)) and hydrogen production (2.18±0.66 [Formula: see text] ) but with lower efficiencies (87±2% COD RE, 71.0±.4% CE). Future work should focus on electron sinks, acclimation and optimizing SY breakdown. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Who’s your mama? Riverine hybridisation of threatened freshwater Trout Cod and Murray Cod

PubMed Central

Unmack, Peter J.; Dyer, Fiona J.; Lintermans, Mark

2016-01-01

Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications; thus, determining whether hybridization is occuring after reintroducing extirpated congeneric species is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including those from the Australian freshwater fish family, Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod, Maccullochella peelii and Trout Cod, Maccullochella macquariensis which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River, Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic single nucleotide polymorphism (SNP) data together with mitochondrial sequences to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. We have confirmed restocked riverine Trout Cod reproducing, but only as inter-specific matings, in the wild. We detected hybrid Trout Cod–Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously, this is the first time fertile F1 have been recorded in a wild riverine population. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs. PMID:27812407

Daily Intake of Protein from Cod Residual Material Lowers Serum Concentrations of Nonesterified Fatty Acids in Overweight Healthy Adults: A Randomized Double-Blind Pilot Study.

PubMed

Vildmyren, Iselin; Cao, Huy John Vu; Haug, Lina Bowitz; Valand, Ida Ulrikke; Eng, Øyvin; Oterhals, Åge; Austgulen, Maren Hoff; Halstensen, Alfred; Mellgren, Gunnar; Gudbrandsen, Oddrun A

2018-06-05

Improved process technologies have allowed fishing vessels to utilize residuals from cod fillet production (head, backbone, skin, cuttings, and entrails) and convert this to high-quality protein powders for human consumption. In this double-blind pilot study, 42 healthy overweight or obese adults were randomized to three experimental groups consuming tablets corresponding to 6 g/day of proteins from cod residuals as presscake meal (Cod-PC), presscake and stickwater meal (Cod-PCW), or placebo tablets (control) for eight weeks. The primary outcome of this study was changes in metabolites related to glucose regulation in overweight or obese healthy adults after intake of proteins from cod residuals. Cod-PC supplementation decreased postprandial serum nonesterified fatty acids (NEFA) concentration and increased gene expressions of diglyceride acyltransferase 1 and 2 in subcutaneous adipose tissue compared with controls. Fasting insulin increased while fasting NEFA and 120-min postprandial glucose decreased within the Cod-PC group, but these changes did not differ from the other groups. In conclusion, supplementation with Cod-PC beneficially affected postprandial serum NEFA concentration compared with the other groups in overweight or obese adults. Supplementation with Cod-PCW, which contains a higher fraction of water-soluble protein compared to Cod-PC, did not affect serum markers of glucose regulation.

[Spatial distribution of COD and the correlations with other parameters in the northern region of Lake Taihu].

PubMed

Zhang, Yun-lin; Yang, Long-yuan; Qin, Bo-qiang; Gao, Guang; Luo, Lian-cong; Zhu, Guang-wei; Liu, Ming-liang

2008-06-01

Spatial variation of chemical oxygen demand (COD) concentration was documented and significant correlations between COD concentration and chromophoric dissolved organic matter (CDOM) absorption, fluorescence, DOC concentration were found based on a cruise sampling in the northern region of Lake Taihu in summer including 42 samplings. The possible source of COD was also discussed using every two cruise samplings in summer and winter, respectively. The COD concentration ranged from 3.77 to 7.96 mg x L(-1) with a mean value of (5.90 +/- 1.54) mg x L(-1). The mean COD concentrations in Meiliang Bay and the central lake basin were (6.93 +/- 0.89) mg x L(-1) and (4.21 +/- 0.49) mg x L(-1) respectively. A significant spatial difference was found between Meiliang Bay and the central lake basin in COD concentration, CDOM absorption coefficient, fluorescence, DOC and phytoplankton pigment concentrations, decreasing from the river mouth to inner bay, outer bay and the central lake basin. Significant correlations between COD concentration and CDOM absorption, fluorescence, DOC concentration, suggested that COD concentration could be estimated and organic pollution could be assessed using CDOM absorption retrieved from remote sensing images. Significant and positive correlation was found between COD concentration and chlorophyll a concentration in summer. However, the correlation was weak or no correlation was found in winter. Furthermore, a significant higher COD concentration was found in summer than in winter (p < 0.001). Our results indicated that degradation of phytoplankton blooms was the main source of COD in summer, except for river terrestrial input.

Cape Cod Transit Task Force : Five-Year Public Transportation Plan

DOT National Transportation Integrated Search

2002-06-30

The U.S. Department of Transportation's Volpe National Transportation Systems : Center has been working in cooperation with the Cape Cod Regional Transit : Authority, the Cape Cod Commission, and other organizations participating on : the Cape Cod Tr...

Life History, Reproductive Biology, and Larval Development of Ontsira mellipes (Hymenoptera: Braconidae), a Newly Associated Parasitoid of the Invasive Asian Longhorned Beetle (Coleoptera: Cerambycidae).

PubMed

Golec, Julian R; Duan, Jian J; Aparicio, Ellen; Hough-Goldstein, Judith

2016-08-01

The invasive Asian longhorned beetle, Anoplophora glabripennis (Motschulsky), is a destructive xylophagous forest pest species originating from Asia. Several endemic North American hymenopteran (Braconidae) species in the mid-Atlantic region were capable of attacking and reproducing on A. glabripennis larvae in laboratory bioassays. Ontsira mellipes Ashmead (Hymenoptera: Braconidae) has been continually reared on A. glabripennis larvae at USDA-ARS BIIRU since 2010, and has been identified as a potential new-association biocontrol agent. Two experiments were conducted to investigate parasitism, paralysis, reproductive biology, larval development, and longevity of adult O. mellipes In the first experiment, pairs of adult parasitoids were given single A. glabripennis larvae every 2 d (along with honey and water) over their lifetimes, while in the second experiment individual parasitoids were observed daily from egg to adult, and adults were subsequently starved. Adults in the first experiment parasitized ∼21% of beetle larvae presented to them throughout their life, and paralysis of larvae occurred 1-2 d after oviposition. More than half of the individual pairs parasitized A. glabripennis larvae, with each female producing around 26 offspring throughout her life. In the second experiment, median development time of O. mellipes from egg to adult was about 3 wk, with five larval instars. Adult O. mellipes that were provided with host larvae, honey, and water lived 9 d longer than host-deprived and starved adults. These findings indicate that mass-rearing procedures for O. mellipes may be developed using the new association host for development of effective biocontrol programs against A. glabripennis. Published by Oxford University Press on behalf of Entomological Society of America 2016. This work is written by US Government employees and is in the public domain in the United States.

Evidence for marine microfossils from amber.

PubMed

Girard, Vincent; Schmidt, Alexander R; Saint Martin, Simona; Struwe, Steffi; Perrichot, Vincent; Saint Martin, Jean-Paul; Grosheny, Danièle; Breton, Gérard; Néraudeau, Didier

2008-11-11

Amber usually contains inclusions of terrestrial and rarely limnetic organisms that were embedded in the places were they lived in the amber forests. Therefore, it has been supposed that amber could not have preserved marine organisms. Here, we report the discovery amber-preserved marine microfossils. Diverse marine diatoms as well as radiolarians, sponge spicules, a foraminifer, and a spine of a larval echinoderm were found in Late Albian and Early Cenomanian amber samples of southwestern France. The highly fossiliferous resin samples solidified approximately 100 million years ago on the floor of coastal mixed forests dominated by conifers. The amber forests of southwestern France grew directly along the coast of the Atlantic Ocean and were influenced by the nearby sea: shells and remnants of marine organisms were probably introduced by wind, spray, or high tide from the beach or the sea onto the resin flows.

Treatment of low-strength soluble wastewater using an anaerobic baffled reactor (ABR).

PubMed

Gopala Krishna, G V T; Kumar, Pramod; Kumar, Pradeep

2009-01-01

Treatment of low-strength soluble wastewater (COD approximately 500 mg/L) was studied using an eight chambered anaerobic baffled reactor (ABR). At pseudo steady-state (PSS), the average total and soluble COD values (COD(T) and COD(S)) at 8h hydraulic retention time (HRT) were found to be around 50 and 40 mg/L, respectively, while at 10h HRT average COD(T) and COD(S) values were of the order of 47 and 37 mg/L, respectively. COD and BOD (3 day, 27 degrees C) removal averaged more than 90%. Effluent conformed to Indian standards laid down for BOD (less than 30 mg/L). Reactor effluent characteristics exhibited very low values of standard deviation indicating excellent reactor stability at PSS in terms of effluent characteristics. Based on mass balance calculations, more than 60% of raw wastewater COD was estimated to be recovered as CH(4) in the gas phase. Compartment-wise profiles indicated that most of the BOD and COD got reduced in the initial compartments only. Sudden drop in pH (7.8-6.7) and formation of volatile fatty acids (VFA) (53-85 mg/L) were observed in the first compartment due to acidogenesis and acetogenesis. The pH increased and VFA concentration decreased longitudinally down the reactor. Residence time distribution (RTD) studies revealed that the flow pattern in the ABR was neither completely plug-flow nor perfectly mixed. Observations from scanning electron micrographs (SEM) suggest that distinct phase separation takes place in an ABR.

Bayesian genome-wide association analysis for body weight in farmed Atlantic salmon (Salmo salar L.).

PubMed

Yoshida, G M; Lhorente, J P; Carvalheiro, R; Yáñez, J M

2017-12-01

We performed a genome-wide association study to detect markers associated with growth traits in Atlantic salmon. The analyzed traits included body weight at tagging (BWT) and body weight at 25 months (BW25M). Genotypes of 4662 animals were imputed from the 50K SNP chip to the 200K SNP chip using fimpute software. The markers were simultaneously modeled using Bayes C to identify genomic regions associated with the traits. We identified windows explaining a maximum of 3.71% and 3.61% of the genetic variance for BWT and BW25M respectively. We found potential candidate genes located within the top ten 1-Mb windows for BWT and BW25M. For instance, the vitronectin (VTN) gene, which has been previously reported to be associated with cell growth, was found within one of the top ten 1-Mb windows for BWT. In addition, the WNT1-inducible-signaling pathway protein 3, melanocortin 2 receptor accessory protein 2, myosin light chain kinase, transforming growth factor beta receptor type 3 and myosin light chain 1 genes, which have been reported to be associated with skeletal growth in humans, growth stimulation during the larval stage in zebrafish, body weight in pigs, feed conversion in chickens and growth rate of sheep skeletal muscle respectively, were found within some of the top ten 1-Mb windows for BW25M. These results indicate that growth traits are most likely controlled by many variants with relatively small effects in Atlantic salmon. The genomic regions associated with the traits studied here may provide further insight into the functional regions underlying growth traits in this species. © 2017 Stichting International Foundation for Animal Genetics.

Avoidance of fisheries-induced evolution: management implications for catch selectivity and limit reference points.

PubMed

Hutchings, Jeffrey A

2009-08-01

I examined how the fitness (r) associated with early- and late-maturing genotypes varies with fishing mortality (F) and age-/size-specific probability of capture. Life-history data on Newfoundland's northern Atlantic cod (Gadus morhua) allowed for the estimation of r for individuals maturing at 4 and 7 year in the absence of fishing. Catch selectivity data associated with four types of fishing gear (trap, gillnet, handline, otter trawl) were then incorporated to examine how r varied with gear type and with F. The resulting fitness functions were then used to estimate the F above which selection would favour early (4 year) rather than delayed (7 year) maturity. This evolutionarily-sensitive threshold, F evol, identifies a limit reference point somewhat similar to those used to define overfishing (e.g., F msy, F 0.1). Over-exploitation of northern cod resulted in fishing mortalities considerably greater than those required to effect evolutionary change. Selection for early maturity is reduced by the dome-shaped selectivities characteristic of fixed gears such as handlines (the greater the leptokurtosis, the lower the probability of a selection response) and enhanced by the knife-edged selectivities of bottom trawls. Strategies to minimize genetic change are consistent with traditional management objectives (e.g., yield maximization, population increase). Compliance with harvest control rules guided by evolutionarily-sensitive limit reference points, which may be achieved by adherence to traditional reference points such as F msy and F 0.1, should be sufficient to minimize the probability of fisheries-induced evolution for commercially exploited species.

Diversity in thermal affinity among key piscivores buffers impacts of ocean warming on predator-prey interactions.

PubMed

Selden, Rebecca L; Batt, Ryan D; Saba, Vincent S; Pinsky, Malin L

2018-01-01

Asymmetries in responses to climate change have the potential to alter important predator-prey interactions, in part by altering the location and size of spatial refugia for prey. We evaluated the effect of ocean warming on interactions between four important piscivores and four of their prey in the U.S. Northeast Shelf by examining species overlap under historical conditions (1968-2014) and with a doubling in CO 2 . Because both predator and prey shift their distributions in response to changing ocean conditions, the net impact of warming or cooling on predator-prey interactions was not determined a priori from the range extent of either predator or prey alone. For Atlantic cod, an historically dominant piscivore in the region, we found that both historical and future warming led to a decline in the proportion of prey species' range it occupied and caused a potential reduction in its ability to exert top-down control on these prey. In contrast, the potential for overlap of spiny dogfish with prey species was enhanced by warming, expanding their importance as predators in this system. In sum, the decline in the ecological role for cod that began with overfishing in this ecosystem will likely be exacerbated by warming, but this loss may be counteracted by the rise in dominance of other piscivores with contrasting thermal preferences. Functional diversity in thermal affinity within the piscivore guild may therefore buffer against the impact of warming on marine ecosystems, suggesting a novel mechanism by which diversity confers resilience. © 2017 John Wiley & Sons Ltd.

Long-term observation of aerosol cloud relationships in the Mid-Atlantic region

NASA Astrophysics Data System (ADS)

Li, S.; Joseph, E.; Min, Q.; Yin, B.

2013-12-01

Long-term ground-based observations of aerosol and cloud properties derived from measurements of Multifilter Rotating Shadow Band Radiometer and microwave radiometer at an atmospheric measurement field station in the Baltimore-Washington corridor operated by Howard University are used to examine the temporal variation of aerosol and cloud properties and moreover aerosol indirect effect on clouds. Through statistical analysis of five years (from 2006 to 2010) of these observations, the proportion of polluted cases is found larger in 2006 and 2007 and the proportion of optically thick clouds cases is also larger in 2006 and 2007 than that in 2008, 2009 and 2010. Both the mean aerosol optical depth (AOD) and cloud optical depth (COD) are observed decreasing from 2006 to 2010 but there is no obvious trend observed on cloud liquid water path (LWP). Because of the limit of AOD retrievals under cloudy conditions surface measurements of fine particle particulate matter 2.5 (PM2.5) were used for assessing aerosol indirect effect. A positive relationship between LWP and cloud droplets effective radius (Re) and a negative relationship between PM2.5 and Re are observed based on a stringent case selection method which is used to reduce the uncertainties from retrieval and meteorological impacts. The total 5 years summer time observations are segregated according to the value of PM2.5. Examination of distributions of COD, cloud condensation nuclei (CCN), cloud droplets effective radius and LWP under polluted and pristine conditions further confirm that the high aerosol loading decreases cloud droplets effective radius and increases cloud optical depth.

Structure of the Branched-chain Amino Acid and GTP-sensing Global Regulator, CodY, from Bacillus subtilis.

PubMed

Levdikov, Vladimir M; Blagova, Elena; Young, Vicki L; Belitsky, Boris R; Lebedev, Andrey; Sonenshein, Abraham L; Wilkinson, Anthony J

2017-02-17

CodY is a branched-chain amino acid (BCAA) and GTP sensor and a global regulator of transcription in low G + C Gram-positive bacteria. It controls the expression of over 100 genes and operons, principally by repressing during growth genes whose products are required for adaptations to nutrient limitation. However, the mechanism by which BCAA binding regulates transcriptional changes is not clear. It is known that CodY consists of a GAF (c G MP-stimulated phosphodiesterases, a denylate cyclases, F hlA) domain that binds BCAAs and a winged helix-turn-helix (wHTH) domain that binds to DNA, but the way in which these domains interact and the structural basis of the BCAA dependence of this interaction are unknown. To gain new insights, we determined the crystal structure of unliganded CodY from Bacillus subtilis revealing a 10-turn α-helix linking otherwise discrete GAF and wHTH domains. The structure of CodY in complex with isoleucine revealed a reorganized GAF domain. In both complexes CodY was tetrameric. Size exclusion chromatography with multiangle laser light scattering (SEC-MALLS) experiments showed that CodY is a dimer at concentrations found in bacterial cells. Comparison of structures of dimers of unliganded CodY and CodY-Ile derived from the tetramers showed a splaying of the wHTH domains when Ile was bound; splaying is likely to account for the increased affinity of Ile-bound CodY for DNA. Electrophoretic mobility shift and SEC-MALLS analyses of CodY binding to 19-36-bp operator fragments are consistent with isoleucine-dependent binding of two CodY dimers per duplex. The implications of these observations for effector control of CodY activity are discussed. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Long term operation of continuous-flow system with enhanced biological phosphorus removal granules at different COD loading.

PubMed

Li, Dong; Lv, Yufeng; Zeng, Huiping; Zhang, Jie

2016-09-01

In this study, a continuous-flow system with enhanced biological phosphorus removal (EBPR) granules was operated at different COD concentrations (200, 300 and 400mgL(-)(1)) to investigate the effect of COD loading on this system. The results showed that when the COD concentration in influent was increased to 400mgL(-)(1), the anaerobic COD removal efficiency and total phosphorus removal efficiency reduced obviously and the settling ability of granules deteriorated due to the proliferation of filamentous bacteria. Moreover, high COD loading inhibited the EPS secretion and destroyed the stability of granules. Results of high-through pyrosequencing indicated that filamentous bacteria had a competitive advantage over polyphosphate-accumulating organisms (PAOs) at high COD loading. The performance of system, settling ability of granules and proportion of PAOs gradually recovered to the initial level after the COD concentration was reduced to 200mgL(-)(1) on day 81. Copyright © 2016 Elsevier Ltd. All rights reserved.

Determination of Microbial Growth by Protein Assay in an Air-Cathode Single Chamber Microbial Fuel Cell.

PubMed

Li, Na; Kakarla, Ramesh; Moon, Jung Mi; Min, Booki

2015-07-01

Microbial fuel cells (MFCs) have gathered attention as a novel bioenergy technology to simultaneously treat wastewater with less sludge production than the conventional activated sludge system. In two different operations of the MFC and aerobic process, microbial growth was determined by the protein assay method and their biomass yields using real wastewater were compared. The biomass yield on the anode electrode of the MFC was 0.02 g-COD-cell/g- COD-substrate and the anolyte planktonic biomass was 0.14 g-COD-cell/g-COD-substrate. An MFC without anode electrode resulted in the biomass yield of 0.07 ± 0.03 g-COD-cell/g-COD-substrate, suggesting that oxygen diffusion from the cathode possibly supported the microbial growth. In a comparative test, the biomass yield under aerobic environment was 0.46 ± 0.07 g-COD-cell/g-COD-substrate, which was about 3 times higher than the total biomass value in the MFC operation.

Co-Inactivation of GlnR and CodY Regulators Impacts Pneumococcal Cell Wall Physiology.

PubMed

Johnston, Calum; Bootsma, Hester J; Aldridge, Christine; Manuse, Sylvie; Gisch, Nicolas; Schwudke, Dominik; Hermans, Peter W M; Grangeasse, Christophe; Polard, Patrice; Vollmer, Waldemar; Claverys, Jean-Pierre

2015-01-01

CodY, a nutritional regulator highly conserved in low G+C Gram-positive bacteria, is essential in Streptococcus pneumoniae (the pneumococcus). A published codY mutant possessed suppressing mutations inactivating the fatC and amiC genes, respectively belonging to iron (Fat/Fec) and oligopeptide (Ami) ABC permease operons, which are directly repressed by CodY. Here we analyzed two additional published codY mutants to further explore the essentiality of CodY. We show that one, in which the regulator of glutamine/glutamate metabolism glnR had been inactivated by design, had only a suppressor in fecE (a gene in the fat/fec operon), while the other possessed both fecE and amiC mutations. Independent isolation of three different fat/fec suppressors thus establishes that reduction of iron import is crucial for survival without CodY. We refer to these as primary suppressors, while inactivation of ami, which is not essential for survival of codY mutants and acquired after initial fat/fec inactivation, can be regarded as a secondary suppressor. The availability of codY- ami+ cells allowed us to establish that CodY activates competence for genetic transformation indirectly, presumably by repressing ami which is known to antagonize competence. The glnR codY fecE mutant was then found to be only partially viable on solid medium and hypersensitive to peptidoglycan (PG) targeting agents such as the antibiotic cefotaxime and the muramidase lysozyme. While analysis of PG and teichoic acid composition uncovered no alteration in the glnR codY fecE mutant compared to wildtype, electron microscopy revealed altered ultrastructure of the cell wall in the mutant, establishing that co-inactivation of GlnR and CodY regulators impacts pneumococcal cell wall physiology. In light of rising levels of resistance to PG-targeting antibiotics of natural pneumococcal isolates, GlnR and CodY constitute potential alternative therapeutic targets to combat this debilitating pathogen, as co-inactivation of these regulators renders pneumococci sensitive to iron and PG-targeting agents.

Host size-dependent anisakid infection in Baltic cod Gadus morhua associated with differential food preferences.

PubMed

Zuo, Shaozhi; Huwer, Bastian; Bahlool, Qusay; Al-Jubury, Azmi; Daugbjerg Christensen, Nanna; Korbut, Rozalia; Kania, Per; Buchmann, Kurt

2016-06-15

A significant increase in the infection level of Baltic cod Gadus morhua with the anisakid nematode larvae Contracaecum osculatum and Pseudoterranova decipiens has been recorded during recent years due to the expanding local population of grey seals Halichoerus grypus, which act as final hosts for these parasites. Here, we report from an investigation of 368 cod (total length [TL] 6-49 cm; caught in ICES Subdivision 25) that the infection level of juvenile cod (TL 6-30 cm) with larvae of C. osculatum and P. decipiens is absent or very low, whereas it increases drastically in larger cod (TL 31-48 cm). A third nematode Hysterothylacium aduncum was rarely found. The study indicates that the prey animals for large cod act as transport hosts for the parasite larvae. Analyses of stomach contents of cod caught in the same area (2007-2014) showed that small benthic organisms (including polychaetes Harmothoë sarsi) are preferred food items by small cod, the isopod Saduria entomon is taken by all size classes, and sprat Sprattus sprattus are common prey items for cod larger than 30 cm. Parasitological investigations (microscopic and molecular analyses) of H. sarsi (100 specimens) and S. entomon (40 specimens) did not reveal infection in these invertebrates, but 11.6% of sprat (265 specimens examined) was shown to be infected with 1-8 C. osculatum third stage larvae per fish. Analyses of sprat stomach contents confirmed that copepods and cladocerans are the main food items of sprat. These observations suggest that the C. osculatum life cycle in the Baltic Sea includes grey seals as final hosts, sprat as the first transport host and cod as second transport host. It may be speculated that sprat obtain infection by feeding on copepods and/or cladocerans, which could serve as the first intermediate hosts. One cannot exclude the possibility that the size-dependent C. osculatum infection of cod may contribute (indirectly or directly) to the differential mortality of larger cod (>38 cm) compared to smaller cod (<30 cm) recently recorded in the Baltic cod population.

UV-catalytic treatment of spent caustic from ethene plant with hydrogen peroxide and ozone oxidation.

PubMed

Yu, Zheng-zhe; Sun, De-zhi; Li, Chang-hai; Shi, Peng-fei; Duan, Xiao-dong; Sun, Guo-rong; Liu, Jun-xin

2004-01-01

The performance of UV/H2O2, UV/O3 and UV/H2O2/O3 oxidation systems for treating spent caustic from an ethylene plant was investigated. In UV/H2O2 system, with the increase of H2O2 dosage, removal efficiencies of COD and the ratio of biochemical oxygen demand (BOD) to chemical oxygen demand (COD) of the effluent were increased and a better performance was obtained than the H2O2 system alone. In UV/H2O2 system, removal efficiency of COD reach 68% under the optimum condition, and BOD/COD ratio was significantly increased from 0.22 to 0.52. In UV/O3 system, with the increase of O3 dosage, removal efficiency of COD and BOD/COD ratio were increased, and a better performance was obtained than the O3 system alone. Under the optimum condition, removal efficiency of COD was 54%, and BOD/COD ratio was significantly increased from 0.22 to 0.48. In UV/H2O2/O3 system, COD removal efficiency was found to be 22.0% higher than UV/O3 system.

Anguilliform larvae collected off North Carolina

USGS Publications Warehouse

Ross, Steve W.; Casazza, T.L.; Quattrini, A.M.; Sulak, K.J.

2007-01-01

The distinctive larval stage of eels (leptocephalus) facilitates dispersal through prolonged life in the open ocean. Leptocephali are abundant and diverse off North Carolina, yet data on distributions and biology are lacking. The water column (from surface to 1,293 m) was sampled in or near the Gulf Stream off Cape Hatteras, Cape Lookout, and Cape Fear, North Carolina during summer through fall of 1999-2005, and leptocephali were collected by neuston net, plankton net, Tucker trawl, and dip net. Additional samples were collected nearly monthly from a transect across southern Onslow Bay, North Carolina (from surface to 91 m) from April 2000 to December 2001 by bongo and neuston nets, Methot frame trawl, and Tucker trawl. Overall, 584 tows were completed, and 224 of these yielded larval eels. The 1,295 eel leptocephali collected (combining all methods and areas) represented at least 63 species (nine families). Thirteen species were not known previously from the area. Dominant families for all areas were Congridae (44% of individuals, 11 species), Ophichthidae (30% of individuals, 27 species), and Muraenidae (22% of individuals, ten species). Nine taxa accounted for 70% of the overall leptocephalus catches (in order of decreasing abundance): Paraconger caudilimbatus (Poey), Gymnothorax ocellatus Agassiz complex, Ariosoma balearicum (Delaroche), Ophichthus gomesii (Castelnau), Callechelys muraena Jordan and Evermann, Letharchus aliculatus McCosker, Rhynchoconger flavus (Goode and Bean), Ophichthus cruentifer (Goode and Bean), Rhynchoconger gracilior (Ginsburg). The top three species represented 52% of the total eel larvae collected. Most leptocephali were collected at night (79%) and at depths > 45 m. Eighty percent of the eels collected in discrete depth Tucker trawls at night ranged from mean depths of 59-353 m. A substantial number (38% of discrete depth sample total) of larval eels were also collected at the surface (neuston net) at night. Daytime leptocephalus distributions were less clear partly due to low catches and lower Tucker trawl sampling effort. While net avoidance may account for some of the low daytime catches, an alternative explanation is that many species of larval eels occur during the day at depths > 350 m. Larvae of 21 taxa of typically shallow water eels were collected at depths > 350 m, but additional discrete depth diel sampling is needed to resolve leptocephalus vertical distributions. The North Carolina adult eel fauna (estuary to at least 2,000 m) consists of 51 species, 41% of which were represented in these collections. Many species of leptocephali collected are not yet known to have juveniles or adults established in the South Atlantic Bight or north of Cape Hatteras. Despite Gulf Stream transport and a prolonged larval stage, many of these eel leptocephali may not contribute to their respective populations. ?? 2006 Springer-Verlag.

Stable Isotope Evidence for Late Medieval (14th–15th C) Origins of the Eastern Baltic Cod (Gadus morhua) Fishery

PubMed Central

Orton, David C.; Makowiecki, Daniel; de Roo, Tessa; Johnstone, Cluny; Harland, Jennifer; Jonsson, Leif; Heinrich, Dirk; Enghoff, Inge Bødker; Lõugas, Lembi; Van Neer, Wim; Ervynck, Anton; Hufthammer, Anne Karin; Amundsen, Colin; Jones, Andrew K. G.; Locker, Alison; Hamilton-Dyer, Sheila; Pope, Peter; MacKenzie, Brian R.; Richards, Michael; O'Connell, Tamsin C.; Barrett, James H.

2011-01-01

Although recent historical ecology studies have extended quantitative knowledge of eastern Baltic cod (Gadus morhua) exploitation back as far as the 16th century, the historical origin of the modern fishery remains obscure. Widespread archaeological evidence for cod consumption around the eastern Baltic littoral emerges around the 13th century, three centuries before systematic documentation, but it is not clear whether this represents (1) development of a substantial eastern Baltic cod fishery, or (2) large-scale importation of preserved cod from elsewhere. To distinguish between these hypotheses we use stable carbon and nitrogen isotope analysis to determine likely catch regions of 74 cod vertebrae and cleithra from 19 Baltic archaeological sites dated from the 8th to the 16th centuries. δ13C and δ15N signatures for six possible catch regions were established using a larger sample of archaeological cod cranial bones (n = 249). The data strongly support the second hypothesis, revealing widespread importation of cod during the 13th to 14th centuries, most of it probably from Arctic Norway. By the 15th century, however, eastern Baltic cod dominate within our sample, indicating the development of a substantial late medieval fishery. Potential human impact on cod stocks in the eastern Baltic must thus be taken into account for at least the last 600 years. PMID:22110675

Cemento-Osseous Dysplasias: Imaging Features Based on Cone Beam Computed Tomography Scans.

PubMed

Cavalcanti, Paulo Henrique Pereira; Nascimento, Eduarda Helena Leandro; Pontual, Maria Luiza Dos Anjos; Pontual, Andréa Dos Anjos; Marcelos, Priscylla Gonçalves Correia Leite de; Perez, Danyel Elias da Cruz; Ramos-Perez, Flávia Maria de Moraes

2018-01-01

Imaging exams have important role in diagnosis of cemento-osseous dysplasia (COD). Cone beam computed tomography (CBCT) stands out for allowing three-dimensional image evaluation. This study aimed to assess the prevalence of cases diagnosed as COD on CBCT scans, as well identify the main imaging features related to these lesions. An analysis was performed in a database containing 22,400 radiological reports, in which all cases showing some type of COD were initially selected. These CBCT exams were reevaluated to confirm the radiographic diagnosis and determine the prevalence and distribution of the types of COD with regard to gender, age and preferred location, while describing its most common imaging aspects. Data were presented using descriptive analyses. There were 82 cases diagnosed as COD in the CBCT images (prevalence of 0.4%). The distribution of patients was 11 (13.4%) male and 71 (86.6%) female, with a mean age of 49.8 years (age-range 17-85 years). There were 47 (57.3%) cases of periapical COD, 23 (28%) of focal COD and 12 (14.6%) of florid COD. The mandible was more affected than the maxilla. In most cases, the lesions were mixed or hyperdense. All COD had well-defined limits and there were no cases of tooth displacement. In conclusion, periapical COD was the most common type and the most affected bone was the mandible. Imaging evaluation is critical for diagnosis and dentists should bear in mind all possible radiographic presentations of COD in order to prevent misleading diagnoses and consequently, inadequate treatments.

76 FR 2084 - North Pacific Fishery Management Council; Public Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-12

... Amendment(T). 6. Aleutian Island (AI) Pacific Cod Issues: Discussion paper on BS&AI Pacific cod Split take action as necessary; Initial review AI Pacific cod processing Sideboards; (postponed). 7. BSAI Crab.... AI Pacific Cod. 4. BSAI Crab Management. 5. Miscellaneous Groundfish. 6. Economic SAFE review. 7...

A Murray Cod Assemblage: Re/Considering Riverscape Pedagogy

ERIC Educational Resources Information Center

Stewart, Alistair James

2018-01-01

This article enacts Deleuze and Guattari's (1987) concept "assemblage" to craft a riverScape pedagogy that is informed by, and responsive to, the Murray Cod, the river, and its circumstances. The Murray Cod, the largest fish species in Australia's Murray-Darling Basin, has diverse cultural meanings. Cod are at once a creation being of…

77 FR 9699 - Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-17

... DEPARTMENT OF THE INTERIOR National Park Service [1730-SZM] Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA AGENCY: National Park Service, Interior. ACTION... National Seashore, 99 Marconi Site Road, Wellfleet, MA 02667. Date: February 7, 2012. George E. Price, Jr...

Grey water biodegradability.

PubMed

Ghunmi, Lina Abu; Zeeman, Grietje; Fayyad, Manar; van Lier, Jules B

2011-02-01

Knowing the biodegradability characteristics of grey water constituents is imperative for a proper design and operation of a biological treatment system of grey water. This study characterizes the different COD fractions of dormitory grey water and investigates the effect of applying different conditions in the biodegradation test. The maximum aerobic and anaerobic biodegradability and conversion rate for the different COD fractions is determined. The results show that, on average, dormitory grey water COD fractions are 28% suspended, 32% colloidal and 40% dissolved. The studied factors incubation time, inoculum addition and temperature are influencing the determined biodegradability. The maximum biodegradability and biodegradation rate differ between different COD fractions, viz. COD(ss), COD(col) and COD(diss). The dissolved COD fraction is characterised by the lowest degradation rate, both for anaerobic and aerobic conditions. The maximum biodegradability for aerobic and anaerobic conditions is 86 and 70% respectively, whereas the first order conversion rate constant, k₂₀, is 0.119 and 0.005 day⁻¹, respectively. The anaerobic and aerobic conversion rates in relation to temperature can be described by the Arrhenius relation, with temperature coefficients of 1.069 and 1.099, respectively.

Thawed cod fillets spoil less rapidly than unfrozen fillets when stored under modified atmosphere at 2 degrees C.

PubMed

Guldager, H S; Bøknaes, N; Osterberg, C; Nielsen, J; Dalgaard, P

1998-09-01

The effect of two months of frozen storage at -20 degrees C on the spoilage characteristics and shelf life of thawed and modified atmosphere packed (MAP) cod fillets stored at 2 degrees C was studied. Thawed MAP cod fillets were compared with fresh cod fillets stored in CO2-containing modified atmospheres with and without added oxygen. The shelf life of 11 to 12 days in the fresh MAP cod was extended to more than 20 days in the thawed MAP cod at 2 degrees C. This shelf life extension was most likely due to the inactivation of the spoilage bacterium Photobacterium phosphoreum during frozen storage as reflected both in chemical analyses and sensory evaluation. In contrast to fresh MAP cod fillets no significant production of trimethylamine occurred and almost no amine odor and taste were detected during 20 days of chill storage of thawed MAP cod fillets. The use of frozen fillets as raw material not only provides a more stable product in MAP but also allows much greater flexibility for production and distribution. However, a slightly increased concentration of dimethylamine, a larger drip loss, and detection of weak frozen storage flavor were observed in the thawed MAP cod fillets.

The Effect of COD Concentration Containing Leaves Litter, Canteen and Composite Waste to the Performance of Solid Phase Microbial Fuel Cell (SMFC)

NASA Astrophysics Data System (ADS)

Samudro, Ganjar; Syafrudin; Nugraha, Winardi Dwi; Sutrisno, Endro; Priyambada, Ika Bagus; Muthi'ah, Hilma; Sinaga, Glory Natalia; Hakiem, Rahmat Tubagus

2018-02-01

This research is conducted to analyze and determine the optimum of COD concentration containing leaves litter, canteen and composite waste to power density and COD removal efficiency as the indicator of SMFC performance. COD as the one of organic matter parameters perform as substrate, nutrient and dominating the whole process of SMFC. Leaves litter and canteen based food waste were obtained from TPST UNDIP in Semarang and treated in SMFC reactor. Its reactor was designed 2 liter volume and equipped by homemade graphene electrodes that were utilized at the surface of organic waste as cathode and in a half of reactor height as anode. COD concentration was initially characterized and became variations of initial COD concentration. Waste volume was maintained 2/3 of volume of reactor. Bacteria sources as the important process factor in SMFC were obtained from river sediment which contain bacteroides and exoelectrogenic bacteria. Temperature and pH were not maintained while power density and COD concentration were periodically observed and measured during 44 days. The results showed that power density up to 4 mW/m2 and COD removal efficiency performance up to 70% were reached by leaves litter, canteen and composite waste at days 11 up to days 44 days. Leaves litter contain 16,567 mg COD/l providing higher COD removal efficiency reached approximately 87.67%, more stable power density reached approximately 4.71 mW/m2, and faster optimum time in the third day than canteen based food waste and composite waste. High COD removal efficiency has not yet resulted in high power density.

Diet of Norwegian coastal cod (Gadus morhua) studied by using citizen science

NASA Astrophysics Data System (ADS)

Enoksen, Siri Elise; Reiss, Henning

2018-04-01

The Norwegian coastal cod (Gadus morhua) is a keystone species in the food web of northern Norwegian fjords. Their relatively stationary populations might specifically depend on local food resources, but the diet of cod has rarely been studied in fjord systems. Using a citizen science approach, where recreational anglers and tourists participated in the sampling, we studied small-scale differences in the diet composition of cod in a fjord system in northern Norway. We compared the cod diet from the MPA Saltstraumen, characterised by strong tidal currents and a highly diverse and abundant fauna, with the inner fjord area of Skjerstadfjord. The diet composition of cod significantly differed between both areas within the fjord. Although fish was the dominant prey in both areas, cod consumed > 40% invertebrates in terms of weight, even in the cod size class of 70-99 cm. The invertebrate prey also caused the observed spatial differences. In Saltstraumen, brittle stars (Ophiuroidea), crabs (Brachyura) and sea cucumbers (Holothuroidea) were important food sources for cod, while sea urchins (Echinoidea), clams (Bivalvia), shrimps (Caridea) and krill (Euphausiacea) dominated the diet in the inner Skjerstadfjord. The high densities of sessile fauna in the dynamic environment of Saltstraumen, was only partly reflected in the diet of cod, with only Holothuroidea found in 17% of the stomachs. High rates of empty stomachs (24%), cannibalism as well as a higher proportion of low-energy prey in the diet of large cod, may indicate a shortage of high quality food in Skjerstadfjord. The samples for this study were collected through a citizen science campaign. This approach might provide opportunities to be used for coastal ecological monitoring with potential applications in local ecosystem management strategies through public involvement.

Elutriated acid fermentation of municipal primary sludge.

PubMed

Ahn, Young Ho; Speece, Richard E

2006-06-01

The performance of a novel fermentation process, adopting a sludge blanket type configuration, for higher hydrolysis/acidogenesis of the municipal primary sludge was investigated under batch and semi-continuous conditions with varying pH and temperature. This acid elutriation slurry reactor provided higher system performance with a short HRT (5d) and higher acidogenic effluent quality under pH 9 and thermophilic (55 degrees C) conditions. The hydrolysis of the sludge was revealed to be significantly dependent on seasonal effects for sludge characteristics but with little impact on acidogenesis. Based on the rainy season at the optimal conditions, VFA production and recovery fraction (VFA(COD)/COD) were 0.18 g VFA(COD)/g VSS(COD) and 63%. As byproducts, nitrogen and phosphorus release were measured at 0.006 g N/g VSS(COD) and 0.003 g P/g VSS(COD), respectively. For the mass balance in a full-scale plant (Q=158,880 m(3)/d) based on the rainy season, the VFA and non-VFA (as COD) production were 3110 kg VFA(COD)/d and 1800 kg COD/d, resulting in an increase of organics of 31 mg COD/L and 20mg VFA(COD)/L and nutrients of 0.7 mg N/L and 0.3 mg P/L in the influent sewage. The economical benefit from this process application was estimated to be about 67 dollars per 1000 m(3) of sewage except for energy requirements and also, better benefits can be expected during the dry season. Moreover, the results revealed that the process has various additional advantages such as pathogen-free stabilized solids production, excellent solids control and economical benefits.

Systems Level Analyses Reveal Multiple Regulatory Activities of CodY Controlling Metabolism, Motility and Virulence in Listeria monocytogenes

PubMed Central

Lobel, Lior; Herskovits, Anat A.

2016-01-01

Bacteria sense and respond to many environmental cues, rewiring their regulatory network to facilitate adaptation to new conditions/niches. Global transcription factors that co-regulate multiple pathways simultaneously are essential to this regulatory rewiring. CodY is one such global regulator, controlling expression of both metabolic and virulence genes in Gram-positive bacteria. Branch chained amino acids (BCAAs) serve as a ligand for CodY and modulate its activity. Classically, CodY was considered to function primarily as a repressor under rich growth conditions. However, our previous studies of the bacterial pathogen Listeria monocytogenes revealed that CodY is active also when the bacteria are starved for BCAAs. Under these conditions, CodY loses the ability to repress genes (e.g., metabolic genes) and functions as a direct activator of the master virulence regulator gene, prfA. This observation raised the possibility that CodY possesses multiple functions that allow it to coordinate gene expression across a wide spectrum of metabolic growth conditions, and thus better adapt bacteria to the mammalian niche. To gain a deeper understanding of CodY’s regulatory repertoire and identify direct target genes, we performed a genome wide analysis of the CodY regulon and DNA binding under both rich and minimal growth conditions, using RNA-Seq and ChIP-Seq techniques. We demonstrate here that CodY is indeed active (i.e., binds DNA) under both conditions, serving as a repressor and activator of different genes. Further, we identified new genes and pathways that are directly regulated by CodY (e.g., sigB, arg, his, actA, glpF, gadG, gdhA, poxB, glnR and fla genes), integrating metabolism, stress responses, motility and virulence in L. monocytogenes. This study establishes CodY as a multifaceted factor regulating L. monocytogenes physiology in a highly versatile manner. PMID:26895237

NanI Sialidase, CcpA, and CodY Work Together To Regulate Epsilon Toxin Production by Clostridium perfringens Type D Strain CN3718.

PubMed

Li, Jihong; Freedman, John C; McClane, Bruce A

2015-10-01

Clostridium perfringens type D strains are usually associated with diseases of livestock, and their virulence requires the production of epsilon toxin (ETX). We previously showed (J. Li, S. Sayeed, S. Robertson, J. Chen, and B. A. McClane, PLoS Pathog 7:e1002429, 2011, http://dx.doi.org/10.1371/journal.ppat.1002429) that BMC202, a nanI null mutant of type D strain CN3718, produces less ETX than wild-type CN3718 does. The current study proved that the lower ETX production by strain BMC202 is due to nanI gene disruption, since both genetic and physical (NanI or sialic acid) complementation increased ETX production by BMC202. Furthermore, a sialidase inhibitor that interfered with NanI activity also reduced ETX production by wild-type CN3718. The NanI effect on ETX production was shown to involve reductions in codY and ccpA gene transcription levels in BMC202 versus wild-type CN3718. Similar to CodY, CcpA was found to positively control ETX production. A double codY ccpA null mutant produced even less ETX than a codY or ccpA single null mutant. CcpA bound directly to sequences upstream of the etx or codY start codon, and bioinformatics identified putative CcpA-binding cre sites immediately upstream of both the codY and etx start codons, suggesting possible direct CcpA regulatory effects. A ccpA mutation also decreased codY transcription, suggesting that CcpA effects on ETX production can be both direct and indirect, including effects on codY transcription. Collectively, these results suggest that NanI, CcpA, and CodY work together to regulate ETX production, with NanI-generated sialic acid from the intestines possibly signaling type D strains to upregulate their ETX production and induce disease. Clostridium perfringens NanI was previously shown to increase ETX binding to, and cytotoxicity for, MDCK host cells. The current study demonstrates that NanI also regulates ETX production via increased transcription of genes encoding the CodY and CcpA global regulators. Results obtained using single ccpA or codY null mutants and a ccpA codY double null mutant showed that codY and ccpA regulate ETX production independently of one another but that ccpA also affects codY transcription. Electrophoretic mobility shift assays and bioinformatic analyses suggest that both CodY and CcpA may directly regulate etx transcription. Collectively, results of this study suggest that sialic acid generated by NanI from intestinal sources signals ETX-producing C. perfringens strains, via CcpA and CodY, to upregulate ETX production and cause disease. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

First report of piscine nodavirus infecting wild winter flounder Pleuronectes americanus in Passamaquoddy Bay, New Brunswick, Canada.

PubMed

Barke, Duane E; MacKinnon, Ann-Margaret; Boston, Linda; Burt, Michael D B; Cone, David K; Speare, David J; Griffiths, Steve; Cook, Marcia; Ritchie, Rachael; Olivier, Gilles

2002-05-10

Piscine nodaviruses (Betanodaviridae) are frequently reported from a variety of cultured and wild finfishes. These non-enveloped, single-stranded RNA virions cause viral encephalopathy and retinopathy (VER), also known as viral nervous necrosis (VNN) or fish encephalitis. Recently, nodavirus infections have posed serious problems for larval and juvenile cultured halibut Hippoglossus hippoglossus in Norway and Scotland. To date, no such viruses have been described from any cultured or wild pleuronectid in Atlantic Canada. Obviously, there exists a need to survey wild populations of pleuronectids to assess the risk of potential transfer of nodavirus from wild to caged fishes. This paper presents the results of monthly surveys (April 2000 to March 2001) of viruses from wild winter flounder Pleuronectes americanus collected from Passamaquoddy Bay, New Brunswick, Canada. Tissue samples from wild flounder were screened initially on commercial cell lines (EPC, SSN-1, SHK and CHSE-214) for any evidence of cytopathic effect (CPE). After confirmation of CPE, nodavirus identification was achieved using reverse transcription polymerase chain reaction (RT-PCR) analysis. We detected nodavirus from only 1 out of 440 flounder (0.23%) examined. This is the first report of piscine nodavirus isolated from wild winter flounder in Atlantic Canada, and although this prevalence may seem low, we discuss the implications of this finding for Canada's emerging halibut aquaculture industry.

Role of egg predation by haddock in the decline of an Atlantic herring population

PubMed Central

Richardson, David E.; Hare, Jonathan A.; Fogarty, Michael J.; Link, Jason S.

2011-01-01

Theoretical studies suggest that the abrupt and substantial changes in the productivity of some fisheries species may be explained by predation-driven alternate stable states in their population levels. With this hypothesis, an increase in fishing or a natural perturbation can drive a population from an upper to a lower stable-equilibrium population level. After fishing is reduced or the perturbation ended, this low population level can persist due to the regulatory effect of the predator. Although established in theoretical studies, there is limited empirical support for predation-driven alternate stable states in exploited marine fish populations. We present evidence that egg predation by haddock (Melanogrammus aeglefinus) can cause alternate stable population levels in Georges Bank Atlantic herring (Clupea harengus). Egg predation by haddock explains a substantial decoupling of herring spawning stock biomass (an index of egg production) from observed larval herring abundance (an index of egg hatching). Estimated egg survival rates ranged from <2–70% from 1971 to 2005. A population model incorporating egg predation and herring fishing explains the major population trends of Georges Bank herring over four decades and predicts that, when the haddock population is high, seemingly conservative levels of fishing can still precipitate a severe decline in the herring population. These findings illustrate how efforts to rebuild fisheries can be undermined by not incorporating ecological interactions into fisheries models and management plans. PMID:21825166

Entomological surveillance, spatial distribution, and diversity of Culicidae (Diptera) immatures in a rural area of the Atlantic Forest biome, State of São Paulo, Brazil.

PubMed

Piovezan, Rafael; Rosa, Stéfany Larissa; Rocha, Matheus Luca; de Azevedo, Thiago Salomão; Von Zuben, Cláudio José

2013-12-01

Because of the high adaptive capacity of mosquitoes, studies that focus on transitional environments become very important, such as those in rural areas, which are considered as bridges between wild diseases and human populations of urban areas. In this study, a survey of the existing species of mosquitoes was performed in an Atlantic Forest area of the city of Santa Bárbara d'Oeste, São Paulo state, Brazil, using traps for immatures and analyzing the frequency and distribution of these insects over the sampling months. Five mosquito species were found: Aedes albopictus (the most frequent species), Aedes aegypti, Aedes fluviatilis, Culex quinquefasciatus, and Toxorhynchites theobaldi. The 4,524 eggs collected in ovitraps showed the presence of the tribe Aedini. Aedes aegypti and Ae. albopictus were identified after larval hatching in the laboratory, with different spatial distributions: the first of which coincides with the area of greatest diversity calculated using the Simpson index, while the second does not. The association of ecological analysis of spatial diversity with simple methods of data collection enables the identification of possible epidemiological risk situations and is a strategy that may be implemented to monitor ecological processes resulting from the interaction among different species of mosquitoes. © 2013 The Society for Vector Ecology.

The fishing area as a possible indicator of the infection by anisakids in anchovies (Engraulis encrasicolus) from southwestern Europe.

PubMed

Rello, Francisco Javier; Adroher, Francisco Javier; Benítez, Rocío; Valero, Adela

2009-02-28

A study was conducted on the parasitization by anisakids of European anchovies (Engraulis encrasicolus) from the Eastern Atlantic (Gulf of Cádiz and Strait of Gibraltar) and Western Mediterranean (Ligurian Sea, Gulf of Lion, Catalonia coast and NW Alborán Sea) throughout 1998 and 1999. The anisakids detected were identified as third larval stages of Anisakis larva type I and Hysterothylacium aduncum. Global prevalence was 9.4% for Anisakis and 24.5% for H. aduncum. Analysis of the origin of the anchovies revealed a higher prevalence of Anisakis than H. aduncum in fish from the Atlantic and vice-versa in fish from the Mediterranean. Analysis of various fishing areas in the Western Mediterranean revealed a prevalence of Anisakis in fish from the Ligurian Sea that was 5-fold or more than in the other three areas, with a significantly greater prevalence of H. aduncum in fish from the NW Mediterranean than from the Spanish Mediterranean coast. The prevalence of infection was found to be significantly related to anchovy length for both Anisakis and H. aduncum. More than 55% of Anisakis larvae were found in the muscle. According to these data, the risk of acquiring anisakiasis/anisakidosis from the consumption of raw or under-cooked anchovies may depend upon the area in which they were caught.

Transcriptomic Responses of Atlantic Salmon (Salmo salar) to Environmental Enrichment during Juvenile Rearing

PubMed Central

Evans, Melissa L.; Hori, Tiago S.; Rise, Matthew L.; Fleming, Ian A.

2015-01-01

Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adversely affect the performance of juveniles upon their release to the wild. Environmental enrichment has been proposed as a mechanism to improve the efficacy of population restoration efforts from captive-rearing programs; in this study, we examine the influence of environmental enrichment during embryo and yolk-sac larval rearing on the transcriptome of Atlantic salmon (Salmo salar). Full siblings were reared in either a hatchery environment devoid of structure or an environment enriched with gravel substrate. At the end of endogenous feeding by juveniles, we examined patterns of gene transcript abundance in head tissues using the cGRASP-designed Agilent 4×44K microarray. Significance analysis of microarrays (SAM) indicated that 808 genes were differentially transcribed between the rearing environments and a total of 184 gene ontological (GO) terms were over- or under-represented in this gene list, several associated with mitosis/cell cycle and muscle and heart development. There were also pronounced differences among families in the degree of transcriptional response to rearing environment enrichment, suggesting that gene-by-environment effects, possibly related to parental origin, could influence the efficacy of enrichment interventions. PMID:25742646

Transcriptomic responses of Atlantic salmon (Salmo salar) to environmental enrichment during juvenile rearing.

PubMed

Evans, Melissa L; Hori, Tiago S; Rise, Matthew L; Fleming, Ian A

2015-01-01

Captive rearing programs (hatcheries) are often used in conservation and management efforts for at-risk salmonid fish populations. However, hatcheries typically rear juveniles in environments that contrast starkly with natural conditions, which may lead to phenotypic and/or genetic changes that adversely affect the performance of juveniles upon their release to the wild. Environmental enrichment has been proposed as a mechanism to improve the efficacy of population restoration efforts from captive-rearing programs; in this study, we examine the influence of environmental enrichment during embryo and yolk-sac larval rearing on the transcriptome of Atlantic salmon (Salmo salar). Full siblings were reared in either a hatchery environment devoid of structure or an environment enriched with gravel substrate. At the end of endogenous feeding by juveniles, we examined patterns of gene transcript abundance in head tissues using the cGRASP-designed Agilent 4×44K microarray. Significance analysis of microarrays (SAM) indicated that 808 genes were differentially transcribed between the rearing environments and a total of 184 gene ontological (GO) terms were over- or under-represented in this gene list, several associated with mitosis/cell cycle and muscle and heart development. There were also pronounced differences among families in the degree of transcriptional response to rearing environment enrichment, suggesting that gene-by-environment effects, possibly related to parental origin, could influence the efficacy of enrichment interventions.

Molecular diagnosis of Pseudoterranova decipiens s.s in human, France.

PubMed

Brunet, Julie; Pesson, Bernard; Royant, Maude; Lemoine, Jean-Philippe; Pfaff, Alexander W; Abou-Bacar, Ahmed; Yera, Hélène; Fréalle, Emilie; Dupouy-Camet, Jean; Merino-Espinosa, Gema; Gómez-Mateos, Magdalena; Martin-Sanchez, Joaquina; Candolfi, Ermanno

2017-06-06

Anisakis and Pseudoterranova are the main genera involved in human infections caused by nematodes of the Anisakidae family. Species identification is complicated due to the lack of differential morphological characteristics at the larval stage, thus requiring molecular differentiation. Pseudoterranova larvae ingested through raw fish are spontaneously eliminated in most cases, but mechanical removal by means of endoscopy might be required. To date, only very few cases of Pseudoterranova infection have been reported in France. A 19-year-old woman from Northeastern France detected, while brushing her teeth, a larva exiting through her mouth. The patient who presented with headache, diarrhea, and abdominal cramps reported having eaten baked cod. The worm was a fourth-stage larva with a size of 22 × 0.9 mm, and molecular biology identified it as Pseudoterranova decipiens sensu stricto (s. s.). In a second P. decipiens infection case, occurring a few months later, a worm exited through the patient's nose after she had eaten raw sea bream. These two cases demonstrate that Pseudoterranova infection is not uncommon among French patients. Therefore, molecular techniques should be more widely applied for a better characterization of anisakidosis epidemiology in France.

NOAA Ship Okeanos Explorer 2012 Field Season in the Northern Gulf of Mexico and U.S. Atlantic Continental Margin

NASA Astrophysics Data System (ADS)

Skarke, A. D.; Lobecker, E.; Malik, M.; VerPlanck, N.

2012-12-01

The NOAA Ship Okeanos Explorer, jointly operated by the NOAA Office of Ocean Exploration and Research and the NOAA Office of Marine and Aviation Operations, is America's only federally managed ship dedicated solely to ocean exploration. The 2012 field season was spent exploring the northern Gulf of Mexico and the U.S. Atlantic continental shelf break and slope. In the Gulf of Mexico, mapping and remotely operated vehicle operations focused on the salt domes and canyons offshore Mississippi and Louisiana, and characterized several of the hundreds of seeps that were detected in the water column backscatter data collected with the ship's Kongsberg EM 302 multibeam sonar (30 kHz) during the 2011 field season. A team of NOAA and non-NOAA partners identified priority frontier areas along the continental shelf and slope between North Carolina and Cape Cod, mapping numerous canyons selected for focused mapping exploration in partnership with the North East Fisheries Science Center, the Mid-Atlantic Regional Council on the Ocean (a state level partnership between various states including NY, NJ, DE, MD, and VA), Woods Hole Oceanographic Institution (WHOI) and Virginia Sea Grant. The 2012 mapping efforts built on data collected during the 2011 field season. Okeanos Explorer data were leveraged by NOAA Ship Henry B. Bigelow to conduct towed camera operations to ground truth multibeam backscatter data for deepwater coral habitat assessment. The Blake Ridge and Cape Fear Diapirs offshore North Carolina were a third focus of exploration operations. Seven 900 meter high cold seeps were discovered in the diapir province. Exploration incorporated WHOI's Sentry autonomous underwater vehicle and its full suite of mapping and oceanographic sensors were used to characterize six seep sites. All data collected by Okeanos Explorer are available via the NOAA public archives with metadata records within 60 to 90 days of the end of each cruise.

Advective and Mixing Time Scales for Transport of Denmark Strait Overflow Water from the Labrador Sea to the Western Subtropical Atlantic Ocean Determined from 129I, CFC and Hydrographic Time Series Observations

NASA Astrophysics Data System (ADS)

Smethie, W. M., Jr.; Smith, J.; Curry, R. G.; Yashayaev, I.; Azetsu-Scott, K.

2016-02-01

129I released to the North Sea from two nuclear fuel reprocessing plants is transported through the Nordic Seas and the Arctic Ocean and is entering the deep North Atlantic, predominantly in dense Denmark Strait Overflow Water (DSOW). CFCs enter the surface ocean and also become incorporated in DSOW. Measurements of temperature, salinity, CFCs and 129I have been made at least annually along WOCE/CLIVAR line AR7W in the Labrador Sea from the mid 1990s to present, along Line W extending from the continental slope southeast of Cape Cod toward Bermuda from 2003 to 2014, and along a single occupation of a line extending from Bermuda southeast across the Bermuda Rise in 2010. The measurements in the Labrador Sea were used as input to DSOW flowing from there to the subtropical western Atlantic Ocean. We compared the temporal changes along Line W to the temporal changes along the AR7W line and applied the boundary current model of Waugh and Hall (J. Phys. Oceanogr. 35,1538-1552, 2005) to the Line W and Bermuda Rise line observations to determine the transit time of DSOW transported to Line W in the Deep Western Boundary Current (DWBC) and transported to the southeastern flank of Bermuda via interior flow paths. The lateral mixing time scale along these two flow paths was also estimated with this model. CFC-11 and 129I increase monotonically in the DSOW in the Labrador Sea and salinity oscillates on a 5-year cycle. The boundary current model reproduces all of these trends. The transit time and lateral mixing time constant for DSOW transported to Line W are 7 years (mean flow velocity of 2.1 cm/sec) and 3-6 years, respectively, and for DSOW transported to the southeast flank of Bermuda are 6-10 years and 2-5 years.

Geographic variation in host fish use and larval metamorphosis for the endangered dwarf wedgemussel

USGS Publications Warehouse

White, Barbara (St. John); Ferreri, C. Paola; Lellis, William A.; Wicklow, Barry J.; Cole, Jeffrey C.

2017-01-01

Host fishes play a crucial role in survival and dispersal of freshwater mussels (Unionoida), particularly rare unionids at conservation risk. Intraspecific variation in host use is not well understood for many mussels, including the endangered dwarf wedgemussel (Alasmidonta heterodon) in the USA.Host suitability of 33 fish species for dwarf wedgemussel glochidia (larvae) from the Delaware and Connecticut river basins was tested in laboratory experiments over 9 years. Relative suitability of three different populations of a single host fish, the tessellated darter (Etheostoma olmstedi), from locations in the Connecticut, Delaware, and Susquehanna river basins, was also tested.Connecticut River basin A. heterodon metamorphosed into juvenile mussels on tessellated darter, slimy sculpin (Cottus cognatus), and Atlantic salmon (Salmo salar) parr. Delaware River basin mussels metamorphosed using these three species, as well as brown trout (Salmo trutta), banded killifish (Fundulus diaphanus), mottled sculpin (Cottus bairdii), striped bass (Morone saxatilis), and shield darter (Percina peltata). Atlantic salmon, striped bass, and sculpins were highly effective hosts, frequently generating 5+ juveniles per fish (JPF) and metamorphosis success (MS; proportion of attaching larvae that successfully metamorphose) ≥ 0.4, and producing juveniles in repeated trials.In experiments on tessellated darters, mean JPF and MS values decreased as isolation between the mussel source (Connecticut River) and each fish source increased; mean JPF = 10.45, 6.85, 4.14, and mean MS = 0.50, 0.41, and 0.34 in Connecticut, Delaware, and Susquehanna river darters, respectively. Host suitability of individual darters was highly variable (JPF = 2–11; MS = 0.20–1.0).The results show that mussel–host fish compatibility in A. heterodon differs among Atlantic coastal rivers, and suggest that hosts including anadromous Atlantic salmon and striped bass may help sustain A. heterodon in parts of its range. Continued examination of host use variation, migratory host roles, and mussel–fish interactions in the wild is critical in conservation of A. heterodon and other vulnerable mussel species.

Removal of slowly biodegradable COD in combined thermophilic UASB and MBBR systems.

PubMed

Ji, M; Yu, J; Chen, H; Yue, P L

2001-09-01

Starch, cellulose and polyvinyl alcohol (PVA) are common substrates of the slowly biodegradable COD (SBCOD) in industrial wastewaters. Removal of the individual and mixed SbCOD substrates was investigated in a combined system of thermophilic upflow anaerobic sludge blanket (TUASB) reactor (55 degrees C) and aerobic moving bed biofilm reactor (MBBR). The removal mechanisms of the three SBCOD substrates were quite different. Starch-COD was almost equally utilized and removed in the two reactors. Cellulose-COD was completely (97-98%) removed from water in the TUASB reactor by microbial entrapment and sedimentation of the cellulose fibers. PVA alone was hardly biodegraded and removed by the combined reactors. However, PVA-COD could be removed to some extent in a binary solution of starch (77%) plus PVA (23%). The PVA macromolecules in the binary solution actually affected the microbial activity in the TUASB reactor resulting accumulation of volatile fatty acids, which shifted the overall COD removal from the TUASB to the MBBR reactor where SBCOD including PVA-COD was removed. Since the three SBCOD substrates were removed by different mechanisms, the combined reactors showed a better and more stable performance than individual reactors.

Combined thermo-chemo-sonic disintegration of waste activated sludge for biogas production.

PubMed

Kavitha, S; Yukesh Kannah, R; Yeom, Ick Tae; Do, Khac-Uan; Banu, J Rajesh

2015-12-01

In the present study, there was an investigation about the impact of a new combined thermo-chemo-sonic disintegration of waste activated sludge (WAS) on biodegradability. The outcome of sludge disintegration reveals that maximum Suspended Solids (SS) reduction and Chemical Oxygen Demand (COD) solubilization effectuated at a specific energy input of 5290.5kJ/kgTS, and was found to be 20%, 16.4%, 15% and 27%, 22%, and 20%, respectively for the three alkalis (NaOH, KOH, and Ca(OH)2). The conversion coefficient of the Volatile Suspended Solids (VSS) to product Soluble COD (SCOD), calculated by nonlinear regression modeling, was found to be 0.5530gSCOD/gVSS, 0.4587gSCOD/gVSS, and 0.4195gSCOD/gVSS for NaOH, KOH, and Ca(OH)2, respectively. In the biodegradability studies, the parameter evaluation provides an estimate of parameter uncertainty and correlation, and elucidates that there is no significant difference in biodegradability (0.413gCOD/gCOD, 0.367gCOD/gCOD, and 0.342gCOD/gCOD) for three alkalis (NaOH, KOH, and Ca(OH)2). Copyright © 2015 Elsevier Ltd. All rights reserved.

Enhanced energy recovery from cassava ethanol wastewater through sequential dark hydrogen, photo hydrogen and methane fermentation combined with ammonium removal.

PubMed

Lin, Richen; Cheng, Jun; Yang, Zongbo; Ding, Lingkan; Zhang, Jiabei; Zhou, Junhu; Cen, Kefa

2016-08-01

Cassava ethanol wastewater (CEW) was subjected to sequential dark H2, photo H2 and CH4 fermentation to maximize H2 production and energy yield. A relatively low H2 yield of 23.6mL/g soluble chemical oxygen demand (CODs) was obtained in dark fermentation. To eliminate the inhibition of excessive NH4(+) on sequential photo fermentation, zeolite was used to remove NH4(+) in residual dark solution (86.5% removal efficiency). The treated solution from 5gCODs/L of CEW achieved the highest photo H2 yield of 369.7mL/gCODs, while the solution from 20gCODs/L gave the lowest yield of 259.6mL/gCODs. This can be explained that photo H2 yield was correlated to soluble metabolic products (SMPs) yield in dark fermentation, and specific SMPs yield decreased from 38.0 to 18.1mM/g CODs. The total energy yield significantly increased to 8.39kJ/gCODs by combining methanogenesis with a CH4 yield of 117.9mL/gCODs. Copyright © 2016 Elsevier Ltd. All rights reserved.

Effect of hydraulic retention time on the performance of down-flow hanging sponge system treating grey wastewater.

PubMed

Tawfik, Ahmed; Wahab, Rifaat Abdel; Al-Asmer, Azza; Matary, Fatma

2011-08-01

Grey wastewater (GW) treatment via down-flow hanging sponge (DHS) system was the subject of the study. The reactor was operated at different hydraulic retention times (HRTs) of 11.7, 5.8 and 2.9 h, corresponding to organic loading rates (OLRs) of 1.9, 3.6 and 6.8 kgCOD/m3 day, respectively. The results obtained revealed that decreasing the HRT from 11.7 to 2.9 h negatively affected on the performance of the DHS system. COD(total), COD(soluble), COD(particulate) and detergent removal efficiency were reduced from 96 ± 2.4 to 90 ± 2.3%, from 83 ± 10 to 69 ± 8%, from 98 ± 2 to 94 ± 3% and from 96 ± 12 to 88 ± 6.9%, respectively. However, the removal efficiency of the distinguished COD fractions and detergent remained unaffected when decreasing the HRT from 11.7 to 5.8 h. The DHS system provided a removal efficiency of 95 ± 1% for COD(total), 79 ± 8% for COD(soluble), 98 ± 2 for COD(particulate) and 94.7% for detergent at an HRT of 5.8 h. Based on these results, it is recommended to operate such a system at an HRT of 5.8 h and OLR not exceeding 3.6 kgCOD/m3 day for producing an effluent quality complying for reuse in unrestricted irrigation purposes. The removal of TKj-N and nitrification efficiency in the DHS system was significantly affected by increasing the OLR from 1.9 to 3.6 kgCOD/m3 day and from 3.6 to 6.8 kgCOD/m3 day. At an OLR of 1.9 kgCOD/m3 day, the DHS system removed 80 ± 12% of TKj-N and 91 ± 22% of ammonia which is significantly higher than that at an OLR of 3.6 (58.5 ± 13%) and 6.8 kgCOD/m3 day (26.8 ± 16%). Similar results were recorded for the removal of total coliform (TC), viz., the efficiencies dropped for TC from 99.8 ± 0.2 to 99.4 ± 0.8% and from 99.4 ± 0.8 to 90.0 ± 7.6%, respectively. DHS profile results showed that the major part of COD was removed in the upper portion of the system while the nitrification process was taken place in the lower part of the DHS system at OLR of 1.9 kgCOD/m3 day and HRT of 11.7 h.

Total and inorganic arsenic in fish samples from Norwegian waters.

PubMed

Julshamn, Kaare; Nilsen, Bente M; Frantzen, Sylvia; Valdersnes, Stig; Maage, Amund; Nedreaas, Kjell; Sloth, Jens J

2012-01-01

The contents of total arsenic and inorganic arsenic were determined in fillet samples of Northeast Artic cod, herring, mackerel, Greenland halibut, tusk, saithe and Atlantic halibut. In total, 923 individual fish samples were analysed. The fish were mostly caught in the open sea off the coast of Norway, from 40 positions. The determination of total arsenic was carried out by inductively coupled plasma mass spectrometry following microwave-assisted wet digestion. The determination of inorganic arsenic was carried out by high-performance liquid chromatography-ICP-MS following microwave-assisted dissolution of the samples. The concentrations found for total arsenic varied greatly between fish species, and ranged from 0.3 to 110 mg kg(-1) wet weight. For inorganic arsenic, the concentrations found were very low (<0.006 mg kg(-1)) in all cases. The obtained results question the assumptions made by the European Food Safety Authority (EFSA) on the inorganic arsenic level in fish used in the recent EFSA opinion on arsenic in food.

Climate change in fish: effects of respiratory constraints on optimal life history and behaviour.

PubMed

Holt, Rebecca E; Jørgensen, Christian

2015-02-01

The difference between maximum metabolic rate and standard metabolic rate is referred to as aerobic scope, and because it constrains performance it is suggested to constitute a key limiting process prescribing how fish may cope with or adapt to climate warming. We use an evolutionary bioenergetics model for Atlantic cod (Gadus morhua) to predict optimal life histories and behaviours at different temperatures. The model assumes common trade-offs and predicts that optimal temperatures for growth and fitness lie below that for aerobic scope; aerobic scope is thus a poor predictor of fitness at high temperatures. Initially, warming expands aerobic scope, allowing for faster growth and increased reproduction. Beyond the optimal temperature for fitness, increased metabolic requirements intensify foraging and reduce survival; oxygen budgeting conflicts thus constrain successful completion of the life cycle. The model illustrates how physiological adaptations are part of a suite of traits that have coevolved. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

The effects of oil spills on marine fish: Implications of spatial variation in natural mortality.

PubMed

Langangen, Ø; Olsen, E; Stige, L C; Ohlberger, J; Yaragina, N A; Vikebø, F B; Bogstad, B; Stenseth, N C; Hjermann, D Ø

2017-06-15

The effects of oil spills on marine biological systems are of great concern, especially in regions with high biological production of harvested resources such as in the Northeastern Atlantic. The scientific studies of the impact of oil spills on fish stocks tend to ignore that spatial patterns of natural mortality may influence the magnitude of the impact over time. Here, we first illustrate how spatial variation in natural mortality may affect the population impact by considering a thought experiment. Second, we consider an empirically based example of Northeast Arctic cod to extend the concept to a realistic setting. Finally, we present a scenario-based investigation of how the degree of spatial variation in natural mortality affects the impact over a gradient of oil spill sizes. Including the effects of spatial variations in natural mortality tends to widen the impact distribution, hence increasing the probability of both high and low impact events. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Stepwise Construction of Polynuclear Complexes of Rhodium and Iridium Assisted by Benzimidazole-2-thiol. NMR and X-ray Diffraction Studies.

PubMed

Tejel, Cristina; Villarroya, B. Eva; Ciriano, Miguel A.; Oro, Luis A.; Lanfranchi, Maurizio; Tiripicchio, Antonio; Tiripicchio-Camellini, Marisa

1996-07-17

Reactions of [M(2)(&mgr;-Cl)(2)(cod)(2)] (cod = 1,5-cyclooctadiene, M = Rh, Ir) with benzimidazole-2-thiol (H(2)Bzimt) afford the mononuclear complexes [MCl(H(2)Bzimt)(cod)] (M = Rh (1), Ir (2)) for which a S-coordination of the ligand is proposed based on their spectroscopic data. The dinuclear complexes [M(2)(&mgr;-HBzimt)(2)(cod)(2)] (M = Rh (3), Ir (4)) are isolated from the reaction of [M(acac)(cod)] and benzimidazole-2-thiol. They contain the monodeprotonated ligand (HBzimt(-)) bridging the two metals in a &mgr;(2)-(1kappaN,2kappaS) coordination mode and in a relative cis,cis-HT arrangement. Complexes 3 and 4 react with the appropriate species [M(cod)(Me(2)CO)(2)](+) to afford the trinuclear cationic aggregates [M(3)(&mgr;-HBzimt)(2)(cod)(3)](+) (M = Rh (5), Ir (6)) and with the [M'(2)(&mgr;-OMe)(2)(cod)(2)] compounds to give the homo- and heterotetranuclear complexes [MM'(&mgr;-Bzimt)(cod)(2)](2) (M = M' = Rh (7), Ir (8); M = Ir, M' = Rh (9)) containing the dideprotonated ligand (Bzimt(2)(-)). The trinuclear neutral complexes [M(3)(&mgr;-Bzimt)(&mgr;-HBzimt)(cod)(3)] are intermediates detected in the synthesis of the tetranuclear complexes. Protonation of 9 with HBF(4) gives the unsymmetrical complex [Ir(2)Rh(&mgr;-HBzimt)(2)(cod)(3)]BF(4) (10). This reaction involves the protonation of the bridging ligands followed by the removal of one "Rh(cod)" moiety to give a single isomer. The molecular structure of [Rh(2)(&mgr;-Bzimt)(cod)(2)](2) (7) has been determined by X-ray diffraction methods. Crystals are monoclinic, space group P2(1)/n, a = 20.173(5) Å, b = 42.076(8) Å, c = 10.983(3) Å, beta = 93.32(2) degrees, Z = 8, 7145 reflections, R = 0.0622, and R(w) = 0.0779. The complete assignment of the resonances of the (1)H NMR spectra of the complexes 3, 4, and 7-9 was carried out by selective decoupling, NOE, and H,H-COSY experiments. The differences in the chemical shifts of the olefinic protons are discussed on the basis of steric and magnetic anisotropy effects.

Artificial Intelligence versus Statistical Modeling and Optimization of Cholesterol Oxidase Production by using Streptomyces Sp.

PubMed Central

Niwas, Ram; Osama, Khwaja; Khan, Saif; Haque, Shafiul; Tripathi, C. K. M.; Mishra, B. N.

2015-01-01

Cholesterol oxidase (COD) is a bi-functional FAD-containing oxidoreductase which catalyzes the oxidation of cholesterol into 4-cholesten-3-one. The wider biological functions and clinical applications of COD have urged the screening, isolation and characterization of newer microbes from diverse habitats as a source of COD and optimization and over-production of COD for various uses. The practicability of statistical/ artificial intelligence techniques, such as response surface methodology (RSM), artificial neural network (ANN) and genetic algorithm (GA) have been tested to optimize the medium composition for the production of COD from novel strain Streptomyces sp. NCIM 5500. All experiments were performed according to the five factor central composite design (CCD) and the generated data was analysed using RSM and ANN. GA was employed to optimize the models generated by RSM and ANN. Based upon the predicted COD concentration, the model developed with ANN was found to be superior to the model developed with RSM. The RSM-GA approach predicted maximum of 6.283 U/mL COD production, whereas the ANN-GA approach predicted a maximum of 9.93 U/mL COD concentration. The optimum concentrations of the medium variables predicted through ANN-GA approach were: 1.431 g/50 mL soybean, 1.389 g/50 mL maltose, 0.029 g/50 mL MgSO4, 0.45 g/50 mL NaCl and 2.235 ml/50 mL glycerol. The experimental COD concentration was concurrent with the GA predicted yield and led to 9.75 U/mL COD production, which was nearly two times higher than the yield (4.2 U/mL) obtained with the un-optimized medium. This is the very first time we are reporting the statistical versus artificial intelligence based modeling and optimization of COD production by Streptomyces sp. NCIM 5500. PMID:26368924

Artificial Intelligence versus Statistical Modeling and Optimization of Cholesterol Oxidase Production by using Streptomyces Sp.

PubMed

Pathak, Lakshmi; Singh, Vineeta; Niwas, Ram; Osama, Khwaja; Khan, Saif; Haque, Shafiul; Tripathi, C K M; Mishra, B N

2015-01-01

Cholesterol oxidase (COD) is a bi-functional FAD-containing oxidoreductase which catalyzes the oxidation of cholesterol into 4-cholesten-3-one. The wider biological functions and clinical applications of COD have urged the screening, isolation and characterization of newer microbes from diverse habitats as a source of COD and optimization and over-production of COD for various uses. The practicability of statistical/ artificial intelligence techniques, such as response surface methodology (RSM), artificial neural network (ANN) and genetic algorithm (GA) have been tested to optimize the medium composition for the production of COD from novel strain Streptomyces sp. NCIM 5500. All experiments were performed according to the five factor central composite design (CCD) and the generated data was analysed using RSM and ANN. GA was employed to optimize the models generated by RSM and ANN. Based upon the predicted COD concentration, the model developed with ANN was found to be superior to the model developed with RSM. The RSM-GA approach predicted maximum of 6.283 U/mL COD production, whereas the ANN-GA approach predicted a maximum of 9.93 U/mL COD concentration. The optimum concentrations of the medium variables predicted through ANN-GA approach were: 1.431 g/50 mL soybean, 1.389 g/50 mL maltose, 0.029 g/50 mL MgSO4, 0.45 g/50 mL NaCl and 2.235 ml/50 mL glycerol. The experimental COD concentration was concurrent with the GA predicted yield and led to 9.75 U/mL COD production, which was nearly two times higher than the yield (4.2 U/mL) obtained with the un-optimized medium. This is the very first time we are reporting the statistical versus artificial intelligence based modeling and optimization of COD production by Streptomyces sp. NCIM 5500.

Strong linkage of polar cod (Boreogadus saida) to sea ice algae-produced carbon: Evidence from stomach content, fatty acid and stable isotope analyses

NASA Astrophysics Data System (ADS)

Kohlbach, Doreen; Schaafsma, Fokje L.; Graeve, Martin; Lebreton, Benoit; Lange, Benjamin Allen; David, Carmen; Vortkamp, Martina; Flores, Hauke

2017-03-01

The polar cod (Boreogadus saida) is considered an ecological key species, because it reaches high stock biomasses and constitutes an important carbon source for seabirds and marine mammals in high-Arctic ecosystems. Young polar cod (1-2 years) are often associated with the underside of sea ice. To evaluate the impact of changing Arctic sea ice habitats on polar cod, we examined the diet composition and quantified the contribution of ice algae-produced carbon (αIce) to the carbon budget of polar cod. Young polar cod were sampled in the ice-water interface layer in the central Arctic Ocean during late summer 2012. Diets and carbon sources of these fish were examined using 4 approaches: (1) stomach content analysis, (2) fatty acid (FA) analysis, (3) bulk nitrogen and carbon stable isotope analysis (BSIA) and (4) compound-specific stable isotope analysis (CSIA) of FAs. The ice-associated (sympagic) amphipod Apherusa glacialis dominated the stomach contents by mass, indicating a high importance of sympagic fauna in young polar cod diets. The biomass of food measured in stomachs implied constant feeding at daily rates of ∼1.2% body mass per fish, indicating the potential for positive growth. FA profiles of polar cod indicated that diatoms were the primary carbon source, indirectly obtained via amphipods and copepods. The αIce using bulk isotope data from muscle was estimated to be >90%. In comparison, αIce based on CSIA ranged from 34 to 65%, with the highest estimates from muscle and the lowest from liver tissue. Overall, our results indicate a strong dependency of polar cod on ice-algae produced carbon. This suggests that young polar cod may be particularly vulnerable to changes in the distribution and structure of sea ice habitats. Due to the ecological key role of polar cod, changes at the base of the sea ice-associated food web are likely to affect the higher trophic levels of high-Arctic ecosystems.

Effects of Plyometric and Directional Training on Speed and Jump Performance in Elite Youth Soccer Players.

PubMed

Beato, Marco; Bianchi, Mattia; Coratella, Giuseppe; Merlini, Michele; Drust, Barry

2018-02-01

Beato, M, Bianchi, M, Coratella, G, Merlini, M, and Drust, B. Effects of plyometric and directional training on speed and jump performance in elite youth soccer players. J Strength Cond Res 32(2): 289-296, 2018-Soccer players perform approximately 1,350 activities (every 4-6 seconds), such as accelerations/decelerations and changes of direction (CODs) during matches. It is well established that COD and plyometric training have a positive impact on fitness parameters in football players. This study analyzed the effect of a complex COD and plyometric protocol (CODJ-G) compared with an isolated COD protocol (COD-G) training on elite football players. A randomized pre-post parallel group trial was used in this study. Twenty-one youth players were enrolled in this study (mean ± SD; age 17 ± 0.8 years, mass 70.1 ± 6.4 kg, and height 177.4 ± 6.2 cm). Players were randomized into 2 different groups: CODJ-G (n = 11) and COD-G (n = 10), training frequency of 2 times a week more than 6 weeks. Sprint 10, 30, and 40 m, long jump, triple hop jump, and 505 COD test were considered. Exercise-induced within-group changes in performance for both CODJ-G and COD-G: long jump (effect size [ES] = 0.32 and ES = 0.26, respectively) and sprint 10 m (ES = -0.51 and ES = -0.22, respectively), after 6 weeks of training. Moreover, CODJ-G reported substantially better results (between-group changes) in long jump test (ES = 0.32). In conclusion, this study showed that short-term protocols (CODJ-G and COD-G) are important and able to give meaningful improvements on power and speed parameters in a specific soccer population. CODJ-G showed a larger effect in sprint and jump parameters compared with COD-G after the training protocol. This study offers important implications for designing COD and jumps training in elite soccer.

Evidence-based treatment and supervision practices for co-occurring mental and substance use disorders in the criminal justice system.

PubMed

Peters, Roger H; Young, M Scott; Rojas, Elizabeth C; Gorey, Claire M

2017-07-01

Over seven million persons in the United States are supervised by the criminal justice system, including many who have co-occurring mental and substance use disorders (CODs). This population is at high risk for recidivism and presents numerous challenges to those working in the justice system. To provide a contemporary review of the existing research and examine key issues and evidence-based treatment and supervision practices related to CODs in the justice system. We reviewed COD research involving offenders that has been conducted over the past 20 years and provide an analysis of key findings. Several empirically supported frameworks are available to guide services for offenders who have CODs, including Integrated Dual Disorders Treatment (IDDT), the Risk-Need-Responsivity (RNR) model, and Cognitive-Behavioral Therapy (CBT). Evidence-based services include integrated assessment that addresses both sets of disorders and the risk for criminal recidivism. Although several evidence-based COD interventions have been implemented at different points in the justice system, there remains a significant gap in services for offenders who have CODs. Existing program models include Crisis Intervention Teams (CIT), day reporting centers, specialized community supervision teams, pre- and post-booking diversion programs, and treatment-based courts (e.g., drug courts, mental health courts, COD dockets). Jail-based COD treatment programs provide stabilization of acute symptoms, medication consultation, and triage to community services, while longer-term prison COD programs feature Modified Therapeutic Communities (MTCs). Despite the availability of multiple evidence-based interventions that have been implemented across diverse justice system settings, these services are not sufficiently used to address the scope of treatment and supervision needs among offenders with CODs.

Simultaneous Hydrogen and Methane Production Through Multi-Phase Anaerobic Digestion of Paperboard Mill Wastewater Under Different Operating Conditions.

PubMed

Farghaly, Ahmed; Tawfik, Ahmed

2017-01-01

Multi-phase anaerobic reactor for H 2 and CH 4 production from paperboard mill wastewater was studied. The reactor was operated at hydraulic retention times (HRTs) of 12, 18, 24, and 36 h, and organic loading rates (OLRs) of 2.2, 1.5, 1.1, and 0.75 kg chemical oxygen demand (COD)/m 3  day, respectively. HRT of 12 h and OLR of 2.2 kg COD/m 3  day provided maximum hydrogen yield of 42.76 ± 14.5 ml/g COD removed and volumetric substrate uptake rate (-rS) of 16.51 ± 4.43 mg COD/L h. This corresponded to the highest soluble COD/total COD (SCOD/TCOD) ratio of 56.25 ± 3.3 % and the maximum volatile fatty acid (VFA) yield (Y VFA ) of 0.21 ± 0.03 g VFA/g COD, confirming that H 2 was mainly produced through SCOD conversion. The highest methane yield (18.78 ± 3.8 ml/g COD removed ) and -rS of 21.74 ± 1.34 mgCOD/L h were achieved at an HRT of 36 h and OLR of 0.75 kg COD/m 3  day. The maximum hydrogen production rate (HPR) and methane production rate (MPR) were achieved at carbon to nitrogen (C/N) ratio of 47.9 and 14.3, respectively. This implies the important effect of C/N ratio on the distinction between the dominant microorganism bioactivities responsible for H 2 and CH 4 production.

[Pollution load and the first flush effect of BOD5 and COD in urban runoff of Wenzhou City].

PubMed

Wang, Jun; Bi, Chun-juan; Chen, Zhen-lou; Zhou, Dong

2013-05-01

Four typical rainfalls were monitored in two different research areas of Wenzhou Municipality. Concentrations of BOD5 and COD in six different urban runoffs were measured. In addition the event mean concentration (EMC), M (V) curve and BOD5/COD of pollutant were calculated. The results showed that concentrations of BOD5 and COD in different urban runoffs of Wenzhou ranged from ND to 69.21 mg x L(-1) and ND to 636 mg x L(-1). Concentrations of BOD5 and COD in different urban runoffs were decreasing over time, so it is greatly significant to manage the initial runoff for reducing organic pollution. Judged by EMC of BOD5 and COD in these five rainfalls, concentrations of pollutant in some urban runoffs were out of the integrated wastewater discharge standard. If these runoffs flowed into river, it would cause environmental pressure to the next level receiving water bodies. According to the M (V) curve, the first flush effect of COD in most urban runoffs was common; while the first flush effect of BOD5 was same as that of COD. The result also showed that organic pollution was serious at the beginning of runoff. The underlying surface type could affect the concentration of BOD5 and COD in urban runoff. While the results of BOD5/COD also suggested that biodegradation was considered as one of the effective ways to decrease the pollution load of organics in urban runoff, and the best management plans (BMPs) should be selected for various urban runoff types for the treatment of organic pollution.

Temperature-Dependent Lipid Storage of Juvenile Arctic cod (Boreogadus saida) and Co-Occurring North Pacific Gadids

NASA Astrophysics Data System (ADS)

Copeman, L.; Laurel, B.; Spencer, M. L.; Iseri, P.; Sremba, A. L.

2016-02-01

Climate change impacts on Arctic ecosystems will largely be determined by temperature-dependent bioenergetics of resident and invading forage fish species. In this study, we experimentally measured total lipids and lipid class storage in the liver and muscle of juvenile Arctic gadids (Arctic cod, Boreogadus saida and saffron cod, Eleginus gracilis) and two North Pacific gadids (walleye pollock, Gadus chalcogrammus and Pacific cod, Gadus macrocephalus). Experiments were conducted over a 6-wk period across five temperatures (0, 5, 9, 16 and 20 °C) at the Hatfield Marine Science Center in Newport, OR, USA. Results indicated clear physiological differences among species in terms of temperature-dependent growth and lipid storage. Arctic cod exhibited highest growth and lipid storage (27 mg/g WW) at the coldest temperature (0 °C) compared to the other gadids, with near maximum growth at 5 °C and onset of mortality above 9 °C. In contrast, saffron cod growth rates steadily increased at temperatures beyond 16 °C, but lipid storage was low overall with only slightly higher lipid storage at warm temperatures (10 to 17 mg/g WW). Both walleye pollock and Pacific cod showed a domed response with increased lipid storage and growth at intermediate temperatures (9 - 12°C) and reduced growth and lipid storage at cold and warm maxima. We did not observe a trade-off between growth rate and lipid accumulation in any species. These results suggest that saffron cod can thrive in a warming Arctic but will be energetically inferior as a prey item to the more temperature-sensitive Arctic cod. Alternatively, North Pacific gadids can energetically resemble Arctic cod at warmer temperatures and could theoretically be an important prey item if their range extends northward with continued climate change.

High-rate activated sludge system for carbon management--Evaluation of crucial process mechanisms and design parameters.

PubMed

Jimenez, Jose; Miller, Mark; Bott, Charles; Murthy, Sudhir; De Clippeleir, Haydee; Wett, Bernhard

2015-12-15

The high-rate activated sludge (HRAS) process is a technology suitable for the removal and redirection of organics from wastewater to energy generating processes in an efficient manner. A HRAS pilot plant was operated under controlled conditions resulting in concentrating the influent particulate, colloidal, and soluble COD to a waste solids stream with minimal energy input by maximizing sludge production, bacterial storage, and bioflocculation. The impact of important process parameters such as solids retention time (SRT), hydraulic residence time (HRT) and dissolved oxygen (DO) levels on the performance of a HRAS system was demonstrated in a pilot study. The results showed that maximum removal efficiencies of soluble COD were reached at a DO > 0.3 mg O2/L, SRT > 0.5 days and HRT > 15 min which indicates that minimizing the oxidation of the soluble COD in the high-rate activated sludge process is difficult. The study of DO, SRT and HRT exhibited high degree of impact on the colloidal and particulate COD removal. Thus, more attention should be focused on controlling the removal of these COD fractions. Colloidal COD removal plateaued at a DO > 0.7 mg O2/L, SRT > 1.5 days and HRT > 30 min, similar to particulate COD removal. Concurrent increase in extracellular polymers (EPS) production in the reactor and the association of particulate and colloidal material into sludge flocs (bioflocculation) indicated carbon capture by biomass. The SRT impacted the overall mass and energy balance of the high-rate process indicating that at low SRT conditions, lower COD mineralization or loss of COD content occurred. In addition, the lower SRT conditions resulted in higher sludge yields and higher COD content in the WAS. Copyright © 2015 Elsevier Ltd. All rights reserved.

Measuring abnormal movements in free-swimming fish with accelerometers: implications for quantifying tag and parasite load.

PubMed

Broell, Franziska; Burnell, Celene; Taggart, Christopher T

2016-03-01

Animal-borne data loggers allow movement, associated behaviours and energy expenditure in fish to be quantified without direct observations. As with any tagging, tags that are attached externally may adversely affect fish behaviour, swimming efficiency and survival. We report on free-swimming wild Atlantic cod (Gadus morhua) held in a large mesocosm that exhibited distinctly aberrant rotational swimming (scouring) when externally tagged with accelerometer data loggers. To quantify the phenomenon, the cod were tagged with two sizes of loggers (18 and 6 g; <2% body mass) that measured tri-axial acceleration at 50 Hz. An automated algorithm, based on body angular rotation, was designed to extract the scouring movements from the acceleration signal (98% accuracy). The algorithm also identified the frequency pattern and associated energy expenditure of scouring in relation to tag load (% body weight). The average per cent time spent scouring (5%) was independent of tag load. The vector of the dynamic body acceleration (VeDBA), used as a proxy for energy expenditure, increased with tag load (r(2)=0.51), and suggests that fish with large tags spent more energy when scouring than fish with small tags. The information allowed us to determine potential detrimental effects of an external tag on fish behaviour and how these effects may be mitigated by tag size. The algorithm can potentially identify similar rotational movements associated with spawning, courtship, feeding and parasite-load shedding in the wild. The results infer a more careful interpretation of data derived from external tags and the careful consideration of tag type, drag, buoyancy and placement, as well as animal buoyancy and species. © 2016. Published by The Company of Biologists Ltd.

Personalities influence spatial responses to environmental fluctuations in wild fish.

PubMed

Villegas-Ríos, David; Réale, Denis; Freitas, Carla; Moland, Even; Olsen, Esben M

2018-06-11

1.Although growing evidence supports the idea that animal personality can explain plasticity in response to changes in the social environment, it remains to be tested whether it can explain spatial responses of individuals in the face of natural environmental fluctuations. This is a major challenge in ecology and evolution as spatial dynamics link individual- and population-level processes. 2.In this study we investigated the potential of individual personalities to predict differences in fish behaviour in the wild. Specifically, our goal was to answer if individual differences in plasticity of space use to sea surface temperature could be explained by differences in personality along the reactive-proactive axis. 3.To address this question we first conducted repeated standard laboratory assays (i.e. open-field test, novel object test and mirror-stimulation test) to assess the personality type of 76 wild-caught Atlantic cod (Gadus morhua). Next, we released the fish back into the sea and monitored their spatial behaviour over large temporal (16 months) and spatial (a whole fjord) scales, using high-resolution acoustic tracking. 4. We demonstrate that 1) cod personality traits are structured into a proactive-reactive syndrome (proactive fish being more bold, exploratory and aggressive), 2) mean depth use of individuals is mainly driven by sea temperature and 3) personality is a significant predictor of home range changes in the wild, where reactive, but not proactive, individuals reduced their home range as sea temperature increased. 5. These findings expand our understanding of the ecological consequences of animal personality and the mechanisms shaping spatial dynamics of animals in nature. This article is protected by copyright. All rights reserved. © 2018 The Authors Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.

Water column monitoring of the biological effects of produced water from the Ekofisk offshore oil installation from 2006 to 2009.

PubMed

Brooks, Steven J; Harman, Christopher; Grung, Merete; Farmen, Eivind; Ruus, Anders; Vingen, Sjur; Godal, Brit F; Barsiene, Janina; Andreikenaite, Laura; Skarpheðinsdottir, Halldóra; Liewenborg, Birgitta; Sundt, Rolf C

2011-01-01

The Norwegian water column monitoring program investigates the biological effects of offshore oil and gas activities in Norwegian waters. In three separate surveys in 2006, 2008, and 2009, bioaccumulation and biomarker responses were measured in mussels (Mytilus edulis) and Atlantic cod (Gadus morhua) held in cages at known distances from the produced water (PW) discharge at the Ekofisk oil field. Identical monitoring studies performed in all three years have allowed the biological effects and bioaccumulation data to be compared, and in addition, enabled the potential environmental benefits of a PW treatment system (CTour), implemented in 2008, to be evaluated. The results of the 2009 survey showed that caged animals were exposed to low levels of PW components, with highest tissue concentrations in mussels located closest to the PW discharge. Mussels located approximately 1-2 km away demonstrated only background concentrations of target compounds. Concentrations of polycyclic aromatic hydrocarbons (PAH) and alkyl phenol (AP) metabolites in the bile of caged cod were elevated at stations 200-250 m from the discharge. There was also a signal of exposure relative to discharge for the biomarkers CYP1A in fish and micronuclei in mussels. All other fish and mussel biomarkers showed no significant exposure effects in 2009. The mussel bioaccumulation data in 2009 indicated a lower exposure to the PW effluent than seen previously in 2008 and 2006, resulting in an associated general improvement in the health of the caged mussels. This was due to the reduction in overall discharge of PW components (measured as oil in water) into the area in 2009 compared to previous years as a result of the improved PW treatment system.

Biodegradation of COD in Household Wastewater with Aerobic Biofilm Technology by Adding Sediment Drainage Sewerage

NASA Astrophysics Data System (ADS)

Sumiyati, Sri; Purwanto; Sutrisno, Endro; Sudarno; Arthawidya, Jalu; Izzudin, Humam

2018-02-01

Household wastewater contains contaminants that harm the environment. One of the pollutants found COD. If being discharged into the environment directly, COD concentrations exceeding the existing quality standard will disrupt the ecosystem in the receiving water body. One of the technologies that can degrade COD is biofilm technology with honeycomb tube media. This research aims to analyze the decrease of COD concentration present in wastewater household with biofilm technology of honeycomb media. The reactor used in was made of glass with a thickness of 4 mm, a volume of 18 litres and operated continuously. The media used is made of a PVC pipe, cut to 3 cm in size and then glued to one another, forming a honey comb. The results showed that there has been a decrease in COD concentration of household wastewater.

Anaerobic biodegradation of aircraft deicing fluid in UASB reactors.

PubMed

Tham, P T Pham thi; Kennedy, K J Kevin J

2004-05-01

A central composite design was employed to methodically investigate anaerobic treatment of aircraft deicing fluid (ADF) in bench-scale Upflow Anaerobic Sludge Blanket (UASB) reactors. A total of 23 runs at 17 different operating conditions (0.8% 1.6% ADF (6000-12,000mg/L COD), 12-56h HRT, and 18-36gVSS/L) were conducted in continuous mode. The development of four empirical models describing process responses (i.e. COD removal efficiency, biomass-specific acetoclastic activity, methane production rate, and methane production potential) as functions of ADF concentration, hydraulic retention time, and biomass concentration is presented. Model verification indicated that predicted responses (COD removal efficiencies, biomass-specific acetoclastic activity, and methane production rates and potential) were in good agreement with experimental results. Biomass-specific acetoclastic activity was improved two-fold from 0.23gCOD/gVSS/d for inoculum to a maximum of 0.55gCOD/gVSS/d during ADF treatment in UASB reactors. For the design window, COD removal efficiencies were higher than 90%. The predicted methane production potentials were close to theoretical values, and methane production rates increased as the organic loading rate is increased. ADF toxicity effects were evident for 1.6% ADF at medium organic loadings (SOLR above 0.5gCOD/gVSS/d). In contrast, good reactor stability and excellent COD removal efficiencies were achieved at 1.2% ADF for reactor loadings approaching that of highly loaded systems (0.73gCOD/gVSS/d).

Could Seals Prevent Cod Recovery in the Baltic Sea?

PubMed Central

MacKenzie, Brian R.; Eero, Margit; Ojaveer, Henn

2011-01-01

Fish populations are increasingly affected by multiple human and natural impacts including exploitation, eutrophication, habitat alteration and climate change. As a result many collapsed populations may have to recover in ecosystems whose structure and functioning differ from those in which they were formerly productive and supported sustainable fisheries. Here we investigate how a cod (Gadus morhua) population in the Baltic Sea whose biomass was reduced due to a combination of high exploitation and deteriorating environmental conditions might recover and develop in the 21st century in an ecosystem that likely will change due to both the already started recovery of a cod predator, the grey seal Halichoerus grypus, and projected climate impacts. Simulation modelling, assuming increased seal predation, fishing levels consistent with management plan targets and stable salinity, shows that the cod population could reach high levels well above the long-term average. Scenarios with similar seal and fishing levels but with 15% lower salinity suggest that the Baltic will still be able to support a cod population which can sustain a fishery, but biomass and yields will be lower. At present knowledge of cod and seal interactions, seal predation was found to have much lower impact on cod recovery, compared to the effects of exploitation and salinity. These results suggest that dual management objectives (recovery of both seal and cod populations) are realistic but success in achieving these goals will also depend on how climate change affects cod recruitment. PMID:21573062

75 FR 19561 - Fisheries of the Economic Exclusive Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-15

... is opening directed fishing for Pacific cod by catcher vessels less than 60 feet (18.3 meters) length... meters) length overall using hook-and-line or pot gear in the BSAI under Sec. 679.20(d)(1)(iii) on March... 400 metric tons of Pacific cod remain in the 2010 Pacific cod apportionment for catcher vessels less...

[Estimation of urban non-point source pollution loading and its factor analysis in the Pearl River Delta].

PubMed

Liao, Yi-Shan; Zhuo, Mu-Ning; Li, Ding-Qiang; Guo, Tai-Long

2013-08-01

In the Pearl Delta region, urban rivers have been seriously polluted, and the input of non-point source pollution materials, such as chemical oxygen demand (COD), into rivers cannot be neglected. During 2009-2010, the water qualities at eight different catchments in the Fenjiang River of Foshan city were monitored, and the COD loads for eight rivulet sewages were calculated in respect of different rainfall conditions. Interesting results were concluded in our paper. The rainfall and landuse type played important roles in the COD loading, with greater influence of rainfall than landuse type. Consequently, a COD loading formula was constructed that was defined as a function of runoff and landuse type that were derived SCS model and land use map. Loading of COD could be evaluated and predicted with the constructed formula. The mean simulation accuracy for single rainfall event was 75.51%. Long-term simulation accuracy was better than that of single rainfall. In 2009, the estimated COD loading and its loading intensity were 8 053 t and 339 kg x (hm2 x a)(-1), and the industrial land was regarded as the main source of COD pollution area. The severe non-point source pollution such as COD in Fenjiang River must be paid more attention in the future.

Combined anaerobic-aerobic treatment of landfill leachates under mesophilic, submesophilic and psychrophilic conditions.

PubMed

Kalyuzhnyi, S; Gladchenko, M; Epov, A

2003-01-01

As a first step of treatment of landfill leachates (total COD--1,430-3,810 mg/l, total nitrogen 90-162 mg/l), a performance of laboratory UASB reactors has been investigated under mesophilic (30 degrees C), sub-mesophilic (20 degrees C) and psychrophilic (10 degrees C) conditions. Under hydraulic retention times (HRT) of around 7 h, when the average organic loading rates (OLR) were around 5 g COD/l/day, the total COD removal accounted for 81% (on the average) with the effluent concentrations close to anaerobic biodegradability limit (0.25 g COD/l) for mesophilic and sub-mesophilic regimes. The psychrophilic treatment conducted under the average HRT of 8 h and the average OLR of 4.22 g COD/l/day showed a total COD removal of 47% producing the effluents (0.75 g COD/l) more suitable for subsequent biological nitrogen removal. All three anaerobic regimes used for leachate treatment were quite efficient for elimination of heavy metals (Fe, Zn, Cu, Pb, Cd) by concomitant precipitation in the form of insoluble sulphides inside the sludge bed. The application of aerobic/anoxic biofilter as a sole polishing step for psychrophilic anaerobic effluents was acceptable for elimination of biodegradable COD and nitrogen approaching the current standards for direct discharge of treated wastewater.

Windowpane flounder (Scophthalmus aquosus) and winter flounder (Pseudopleuronectes americanus) responses to cold temperature extremes in a Northwest Atlantic estuary

NASA Astrophysics Data System (ADS)

Wilber, Dara H.; Clarke, Douglas G.; Alcoba, Catherine M.; Gallo, Jenine

2016-01-01

The effect of climate variability on flatfish includes not only the effects of warming on sensitive life history stages, but also impacts from more frequent or unseasonal extreme cold temperatures. Cold weather events can affect the overwintering capabilities of flatfish near their low temperature range limits. We examined the responses of two flatfish species, the thin-bodied windowpane (Scophthalmus aquosus) and cold-tolerant winter flounder (Pseudopleuronectes americanus), to variable winter temperatures in a Northwest Atlantic estuary using abundance and size data collected during a monitoring study, the Aquatic Biological Survey, conducted from 2002 to 2010. Winter and spring abundances of small (50 to 120 mm total length) juvenile windowpane were positively correlated with adult densities (spawning stock) and fall temperatures (thermal conditions experienced during post-settlement development for the fall-spawned cohort) of the previous year. Windowpane abundances in the estuary were significantly reduced and the smallest size class was nearly absent after several consecutive years with cold (minimum temperatures < 1 °C) winters. Interannual variation in winter flounder abundances was unrelated to the severity of winter temperatures. A Paulik diagram illustrates strong positive correlations between annual abundances of sequential winter flounder life history stages (egg, larval, Age-1 juvenile, and adult male) within the estuary, reflecting residency within the estuary through their first year of life. Temperature variables representing conditions during winter flounder larval and post-settlement development were not significant factors in multiple regression models exploring factors that affect juvenile abundances. Likewise, densities of predators known to consume winter flounder eggs and/or post-settlement juveniles were not significantly related to interannual variation in winter flounder juvenile abundances. Colder estuarine temperatures through the first year of life were associated with smaller Age-1 winter flounder body size. For example, Age-1 winter flounder developing under conditions that differed by 1.9 °C in mean daily water temperature, averaged 98.7 mm total length (TL) and 123.1 mm TL, for the relatively cold vs. moderate years, respectively. More frequent cold temperature extremes associated with climate variability may negatively impact the overwintering capabilities of some flatfish near their cold temperature range limits, whereas cold-tolerant species may experience reduced growth, which imparts the ecological challenges associated with smaller body size.

[Assessment of production of eggs of Eastern Baltic cod (Gadus morhua callarias L.) on the basis of long-term ichthyoplankton data].

PubMed

Karaseva, E M

2011-01-01

Proceeding from long-term data on the numbers of eggs of cod in ichthyoplankton, the total annual production of cod eggs at four main spawning grounds of the Baltic Sea was calculated. It was shown that the long-term fluctuations of cod egg production were positively related to the dynamics of the volume of waters coming to the Baltic Sea in years of the North Sea advections. It is suggested that this dependence was determined by a set of adaptations providing the extension of cod reproduction upon the improvement of the environment.

Cod Fractions In Mechanical-Biological Wastewater Treatment Plant

NASA Astrophysics Data System (ADS)

Płuciennik-Koropczuk, Ewelina; Jakubaszek, Anita; Myszograj, Sylwia; Uszakiewicz, Sylwia

2017-03-01

The paper presents results of studies concerning the designation of COD fraction in the raw, mechanically treated and biologically treated wastewater. The test object was a wastewater treatment plant with the output of over 20,000 PE. The results were compared with data received in the ASM models. During investigation following fractions of COD were determined: dissolved non-biodegradable SI, dissolved easily biodegradable SS, in organic suspension slowly degradable XS and in organic suspension non-biodegradable XI. Methodology for determining the COD fraction was based on the guidelines ATV-A 131. The real percentage of each fraction in total COD in raw wastewater are different from data received in ASM models.

Zero Liquid Discharge approach in plating industry: treatment of degreasing effluents by electrocoagulation and anodic oxidation.

PubMed

Hermon, S; Grange, D; Pellet, Y; Lloret, G; Oyonarte, S; Bosch, F; Coste, M

2008-01-01

Degreasing waste effluents issued from a surface treatment plant were treated by electrochemical techniques in an attempt to reduce COD so that clean water can be returned to the rinse bath. Electrocoagulation, both with iron and aluminium anodes, and anodic oxidation with boron doped diamond (BDD) anodes were tested. In the electrocoagulation tests, the nature of the anodes did not impact significantly the reduction of COD. Electrocoagulation showed good COD removal rates, superior to 80%, but it was not able to reduce COD down to low levels. Anodic oxidation was able to reduce COD down to discharge limits; the oxidation efficiency was superior to 50%. Economical calculations show that anodic oxidation is best used as a polishing step after electrocoagulation. The bulk of the COD would be reduced by electrocoagulation and, then, anodic oxidation would reduce COD below discharge limits. The maximum treatable flow is somewhat hindered by the small sizes of current BDD installation but it would reach 600 m(3)/year if anodic oxidation is coupled with electrocoagulation, the operational cost being 2.90 Euros /m(3). (c) IWA Publishing 2008.

Unraveling the influence of the COD/sulfate ratio on organic matter removal and methane production from the biodigestion of sugarcane vinasse.

PubMed

Kiyuna, Luma Sayuri Mazine; Fuess, Lucas Tadeu; Zaiat, Marcelo

2017-05-01

Throughout the sugarcane harvest, it is common for sulfate to accumulate in the vinasse of sugar and ethanol plants. However, little is known regarding the influence of sulfate on the anaerobic digestion (AD) of vinasse, which may lead to severe performance losses. This study assessed the influence of various COD/sulfate ratios (12.0, 10.0 and 7.5) on both COD removal and methane (CH 4 ) production from sugarcane vinasse AD. Batch assays were conducted in thermophilic conditions. At a COD/sulfate ratio of 7.5, CH 4 production was 35% lower compared with a ratio of 12.0, considering a diversion of approximately 13.6% of the electron flow to sulfidogenesis. The diversion of electrons to sulfidogenesis was negligible at COD/sulfate ratios higher than 25, considering the exponential increase in CH 4 production. Organic matter degradation was not greatly affected by sulfidogenesis, with COD removal levels higher than 80%, regardless of the initial COD/sulfate ratio. Copyright © 2017 Elsevier Ltd. All rights reserved.

First study to explore the feasibility of applying microbial fuel cells into constructed wetlands for COD monitoring.

PubMed

Xu, Lei; Zhao, Yaqian; Fan, Chuang; Fan, Zhiren; Zhao, Fangchao

2017-11-01

Chemical oxygen demand (COD) is one of the major targets to remove in constructed wetlands (CWs) system. Traditional method for COD measurement is a complex, time-consuming and highly toxic reagents participated procedure. In this study, microbial fuel cell (MFC) was successfully integrated into CW for indicating COD concentration. Results showed that there are two linear correlations between bioelectrical signals (output voltage from MFC) and COD concentration (acetate), which are COD from 0 to 500mg/L (101.99±7.42 to 631.74±7.41mV, R 2 =0.9710) and then from 500 to 1000mg/L (631.74±7.41 to 668.46±0.01mV, R 2 =0.9245). Furthermore, results also revealed the specificity of the system in terms of different types of carbon source. Overall, this work presented the feasibility of using CW-MFC for in-situ sensing COD during the wastewater treatment process, which will be a promising technique for water quality monitoring within CWs. Copyright © 2017 Elsevier Ltd. All rights reserved.

Food web dynamics affect Northeast Arctic cod recruitment.

PubMed

Hjermann, Dag Ø; Bogstad, Bjarte; Eikeset, Anne Maria; Ottersen, Geir; Gjøsaeter, Harald; Stenseth, Nils Chr

2007-03-07

Proper management of ecosystems requires an understanding of both the species interactions as well as the effect of climate variation. However, a common problem is that the available time-series are of different lengths. Here, we present a general approach for studying the dynamic structure of such interactions. Specifically, we analyse the recruitment of the world's largest cod stock, the Northeast Arctic cod. Studies based on data starting in the 1970-1980s indicate that this stock is affected by temperature through a variety of pathways. However, the value of such studies is somewhat limited by the fact that they are based on a quite specific ecological and climatic situation. Recently, this stock has consisted of fairly young fish and the spawning stock has consisted of relatively few age groups. In this study, we develop a model for the effect of capelin (the cod's main prey) and herring on cod recruitment since 1973. Based on this model, we analyse data on cod, herring and temperature going back to 1921 and find that food-web effects explain a significant part of the cod recruitment variation back to around 1950.

Uncertainties in stormwater runoff data collection from a small urban catchment, Southeast China.

PubMed

Huang, Jinliang; Tu, Zhenshun; Du, Pengfei; Lin, Jie; Li, Qingsheng

2010-01-01

Monitoring data are often used to identify stormwater runoff characteristics and in stormwater runoff modelling without consideration of their inherent uncertainties. Integrated with discrete sample analysis and error propagation analysis, this study attempted to quantify the uncertainties of discrete chemical oxygen demand (COD), total suspended solids (TSS) concentration, stormwater flowrate, stormwater event volumes, COD event mean concentration (EMC), and COD event loads in terms of flow measurement, sample collection, storage and laboratory analysis. The results showed that the uncertainties due to sample collection, storage and laboratory analysis of COD from stormwater runoff are 13.99%, 19.48% and 12.28%. Meanwhile, flow measurement uncertainty was 12.82%, and the sample collection uncertainty of TSS from stormwater runoff was 31.63%. Based on the law of propagation of uncertainties, the uncertainties regarding event flow volume, COD EMC and COD event loads were quantified as 7.03%, 10.26% and 18.47%.

Effect of organic matter to nitrogen ratio on membrane bioreactor performance.

PubMed

Hao, L; Liao, B Q

2015-01-01

Effect of chemical oxygen demand (COD) to nitrogen (COD:N) ratio in feed on the performance of aerobic membrane bioreactor (MBR) for treating a synthetic high-strength industrial waste water containing glucose was studied for over 370 days. The widely recommended nutrients ratio (COD:N:P = 100:5:1) is not necessary for aerobic biological industrial waste water treatment. An increased COD:N ratio from 100:5 to 100:2.5 and 100:1.8 had a limited impact on COD removal efficiency and further led to a significant improvement in membrane performance, a reduced sludge yield, and improved effluent quality in terms of residual nutrients. An increased COD:N ratio will benefit the industrial waste water treatment using MBRs by reducing membrane fouling and sludge yield, saving chemical costs, and reducing secondary pollution by nutrients addition. Optimization of nutrients usage should be conducted for specific industrial waste water streams.

Treatment of hospital waste water by ozone technology

NASA Astrophysics Data System (ADS)

Indah Dianawati, Rina; Endah Wahyuningsih, Nur; Nur, Muhammad

2018-05-01

Conventional treatment hospital wastewater need high cost, large area, long time and the final result leaves a new waste known as sludge. Alternative to more efficient and new technologies for treated hospital wastewaters was ozonation. Ozonation is able to oxidized pollutant materials in wastewater. This research is to know the decrease of COD and TDS levels with ozone. Waste water samples used by dr. Adhyatma, MPH Hospitals Semarang. Kruskal-Wallis test for COD and TDS with variation of concentration p-value = 0,029 and 0,001 (p≤0,05) or there is significantly difference between COD and TDS with level of concentration but there were no different between levels of COD, and TDS with reactions time variations p-value = 0,735, and 0,870 (p≥0.05). Ozone efficiently reduction of COD and TDS at a concentration of 100 mg/liter, the lowest mean value at COD 17.47 mg/liter and TDS 409.75 mg/liter.

[Distributions of COD and petroleum hydrocarbons and their relationships with occurrence of red tide in East China Sea].

PubMed

Zhang, Chuansong; Wang, Xiulin; Shi, Xiaoyong; Han, Xiurong; Sun, Xia; Zhu, Chenjian; Lu, Rong

2003-07-01

Based on the data of COD and petroleum hydrocarbons collected in the cruise from April 25 to May 2, 2002 in intensive red tide occurrence areas in East China Sea, the distribution of COD, and petroleum hydrocarbons and the eutrophication index(EI) were analyzed. The results showed that the EI and COD value were both high in coastal water, and decreased gradually away from shore. After the preliminary study on the relationships between correlative factors and occurrence of red tide, it was found that high EI and COD were necessary. There would be great chances for the red tide to break out under conditions that the EI was between 2.5 and 15 and COD concentration was between 0.8 to 1.4 mg.L-1 in seawater, along with the favorable temperature and salinity.