Sample records for light source tls
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The Use of Terrestrial Laser Scanning for Determining the Driver’s Field of Vision
Zemánek, Tomáš; Cibulka, Miloš; Skoupil, Jaromír
2017-01-01
Terrestrial laser scanning (TLS) is currently one of the most progressively developed methods in obtaining information about objects and phenomena. This paper assesses the TLS possibilities in determining the driver’s field of vision in operating agricultural and forest machines with movable and immovable components in comparison to the method of using two light point sources for the creation of shade images according to ISO (International Organization for Standardization) 5721-1. Using the TLS method represents a minimum time saving of 55% or more, according to the project complexity. The values of shading ascertained by using the shadow cast method by the point light sources are generally overestimated and more distorted for small cabin structural components. The disadvantage of the TLS method is the scanner’s sensitivity to a soiled or scratched cabin windscreen and to the glass transparency impaired by heavy tinting. PMID:28902177
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Updating the Synchrotron Radiation Monitor at TLS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Kuo, C. H.; Hsu, S. Y.; Wang, C. J.
2007-01-19
The synchrotron radiation monitor provides useful information to support routine operation and physics experiments using the beam. Precisely knowing the profile of the beam helps to improve machine performance. The synchrotron radiation monitor at the Taiwan Light Source (TLS) was recently upgraded. The optics and modeling were improved to increase the accuracy of measurement in the small beam size. A high-performance IEEE-1394 digital CCD camera was used to improve the quality of images and extend the dynamic range of measurement. The image analysis is also improved. This report summarizes status and results.
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VERTICAL BEAM SIZE CONTROL IN TLS AND TPS.
DOE Office of Scientific and Technical Information (OSTI.GOV)
KUO, C.C.; CHEN, J.R.; CHOU, P.J.
2006-06-26
Vertical beam size control is an important issue in the light source operations. The horizontal-vertical betatron coupling and vertical dispersion were measured and corrected to small values in the TLS 1.5 GeV storage ring. Estimated beam sizes are compared with the measured values. By employing an effective transverse damping system, the vertical beam blow-up due to transverse coherent instabilities, such as the fast-ion beam instability, was suppressed. As a result, the light source is very stable. In NSRRC we are designing an ultra low emittance 3-GeV storage ring and its designed vertical beam size could be as small as amore » few microns. The ground and mechanic vibration effects, and coherent instabilities could spoil the expected photon brightness due to blow-up of the vertical beam size if not well taken care of. The contributions of these effects to vertical beam size increase will be evaluated and the counter measures to minimize them will be proposed and reported in this paper.« less
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NASA Astrophysics Data System (ADS)
Hardiman, B. S.; Atkins, J.; Dahlin, K.; Fahey, R. T.; Gough, C. M.
2016-12-01
Canopy physical structure - leaf quantity and arrangement - strongly affects light interception and distribution. As such, canopy physical structure is a key driver of forest carbon (C) dynamics. Terrestrial lidar systems (TLS) provide spatially explicit, quantitative characterizations of canopy physical structure at scales commensurate with plot-scale C cycling processes. As an example, previous TLS-based studies established that light use efficiency is positively correlated with canopy physical structure, influencing the trajectory of net primary production throughout forest development. Linking TLS measurements of canopy structure to multispectral satellite observations of forest canopies may enable scaling of ecosystem C cycling processes from leaves to continents. We will report on our study relating a suite of canopy structural metrics to well-established remotely sensed measurements (NDVI, EVI, albedo, tasseled cap indices, etc.) which are indicative of important forest characteristics (leaf area, canopy nitrogen, light interception, etc.). We used Landsat data, which provides observations at 30m resolution, a scale comparable to that of TLS. TLS data were acquired during 2009-2016 from forest sites throughout Eastern North America, comprised primarily of NEON and Ameriflux sites. Canopy physical structure data were compared with contemporaneous growing-season Landsat data. Metrics of canopy physical structure are expected to covary with forest composition and dominant PFT, likely influencing interaction strength between TLS and Landsat canopy metrics. More structurally complex canopies (those with more heterogeneous distributions of leaf area) are expected to have lower albedo, suggesting greater canopy light absorption (higher fAPAR) than simpler canopies. We expect that vegetation indices (NDVI, EVI) will increase with TLS metrics of spatial heterogeneity, and not simply quantity, of leaves, supporting our hypothesis that canopy light absorption is dependent on both leaf quantity and arrangement. Relating satellite observations of canopy properties to TLS metrics of canopy physical structure represents an important advance for modelling canopy energy balance and forest C cycling processes at large spatial scales.
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Study of Uneven Fills to Cure the Coupled-Bunch Instability in SRRC
DOE Office of Scientific and Technical Information (OSTI.GOV)
Chao, Alex W.
2002-08-12
The performance of the 1.5-GeV storage ring light source TLS in SRRC has been limited by a longitudinal coupled-bunch beam instability. To improve the performance of the TLS, the beam instability has to be suppressed. One possible way considered for the TLS to suppress its coupled-bunch instability uses uneven filling patterns according to the theory of Prabhakar[1]. By knowing the harmful high-order-modes (HOMs), a special filling pattern can be designed to utilize either mode coupling or Landau damping to cure beam instability. In TLS the HOMs are contributed from the Doris RF cavity installed in the storage ring. The HOMsmore » of a 3-D Doris cavity was numerically analyzed. Filling patterns with equal bunch current according to theory had been calculated to cure the most harmful HOM. A longitudinal particle tracking program was used to simulate the coupled-bunch beam instability with both the uniform filling and the special designed filling. Filling pattern with unequal bunch current was also studied. The results of the simulation were discussed and compared to the theory.« less
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Fu, Qinyi; Martin, Benjamin L.; Matus, David Q.; Gao, Liang
2016-01-01
Despite the progress made in selective plane illumination microscopy, high-resolution 3D live imaging of multicellular specimens remains challenging. Tiling light-sheet selective plane illumination microscopy (TLS-SPIM) with real-time light-sheet optimization was developed to respond to the challenge. It improves the 3D imaging ability of SPIM in resolving complex structures and optimizes SPIM live imaging performance by using a real-time adjustable tiling light sheet and creating a flexible compromise between spatial and temporal resolution. We demonstrate the 3D live imaging ability of TLS-SPIM by imaging cellular and subcellular behaviours in live C. elegans and zebrafish embryos, and show how TLS-SPIM can facilitate cell biology research in multicellular specimens by studying left-right symmetry breaking behaviour of C. elegans embryos. PMID:27004937
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Automatic Registration of TLS-TLS and TLS-MLS Point Clouds Using a Genetic Algorithm
Yan, Li; Xie, Hong; Chen, Changjun
2017-01-01
Registration of point clouds is a fundamental issue in Light Detection and Ranging (LiDAR) remote sensing because point clouds scanned from multiple scan stations or by different platforms need to be transformed to a uniform coordinate reference frame. This paper proposes an efficient registration method based on genetic algorithm (GA) for automatic alignment of two terrestrial LiDAR scanning (TLS) point clouds (TLS-TLS point clouds) and alignment between TLS and mobile LiDAR scanning (MLS) point clouds (TLS-MLS point clouds). The scanning station position acquired by the TLS built-in GPS and the quasi-horizontal orientation of the LiDAR sensor in data acquisition are used as constraints to narrow the search space in GA. A new fitness function to evaluate the solutions for GA, named as Normalized Sum of Matching Scores, is proposed for accurate registration. Our method is divided into five steps: selection of matching points, initialization of population, transformation of matching points, calculation of fitness values, and genetic operation. The method is verified using a TLS-TLS data set and a TLS-MLS data set. The experimental results indicate that the RMSE of registration of TLS-TLS point clouds is 3~5 mm, and that of TLS-MLS point clouds is 2~4 cm. The registration integrating the existing well-known ICP with GA is further proposed to accelerate the optimization and its optimizing time decreases by about 50%. PMID:28850100
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Automatic Registration of TLS-TLS and TLS-MLS Point Clouds Using a Genetic Algorithm.
Yan, Li; Tan, Junxiang; Liu, Hua; Xie, Hong; Chen, Changjun
2017-08-29
Registration of point clouds is a fundamental issue in Light Detection and Ranging (LiDAR) remote sensing because point clouds scanned from multiple scan stations or by different platforms need to be transformed to a uniform coordinate reference frame. This paper proposes an efficient registration method based on genetic algorithm (GA) for automatic alignment of two terrestrial LiDAR scanning (TLS) point clouds (TLS-TLS point clouds) and alignment between TLS and mobile LiDAR scanning (MLS) point clouds (TLS-MLS point clouds). The scanning station position acquired by the TLS built-in GPS and the quasi-horizontal orientation of the LiDAR sensor in data acquisition are used as constraints to narrow the search space in GA. A new fitness function to evaluate the solutions for GA, named as Normalized Sum of Matching Scores, is proposed for accurate registration. Our method is divided into five steps: selection of matching points, initialization of population, transformation of matching points, calculation of fitness values, and genetic operation. The method is verified using a TLS-TLS data set and a TLS-MLS data set. The experimental results indicate that the RMSE of registration of TLS-TLS point clouds is 3~5 mm, and that of TLS-MLS point clouds is 2~4 cm. The registration integrating the existing well-known ICP with GA is further proposed to accelerate the optimization and its optimizing time decreases by about 50%.
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Kovalev, Vadim M; Tse, Wang-Kong
2017-11-22
We develop a microscopic theory for the relaxation dynamics of an optically pumped two-level system (TLS) coupled to a bath of weakly interacting Bose gas. Using Keldysh formalism and diagrammatic perturbation theory, expressions for the relaxation times of the TLS Rabi oscillations are derived when the boson bath is in the normal state and the Bose-Einstein condensate (BEC) state. We apply our general theory to consider an irradiated quantum dot coupled with a boson bath consisting of a two-dimensional dipolar exciton gas. When the bath is in the BEC regime, relaxation of the Rabi oscillations is due to both condensate and non-condensate fractions of the bath bosons for weak TLS-light coupling and pre dominantly due to the non-condensate fraction for strong TLS-light coupling. Our theory also shows that a phase transition of the bath from the normal to the BEC state strongly influences the relaxation rate of the TLS Rabi oscillations. The TLS relaxation rate is approximately independent of the pump field frequency and monotonically dependent on the field strength when the bath is in the low-temperature regime of the normal phase. Phase transition of the dipolar exciton gas leads to a non-monotonic dependence of the TLS relaxation rate on both the pump field frequency and field strength, providing a characteristic signature for the detection of BEC phase transition of the coupled dipolar exciton gas.
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Current Status of the Beam Position Monitoring System at TLS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Kuo, C. H.; Hu, K. H.; Chen, Jenny
2006-11-20
The beam position monitoring system is an important part of a synchrotron light source that supports its routine operation and studies of beam physics. The Taiwan light source is equipped with 59 BPMs. Highly precise closed orbits are measured by multiplexing BPMs. Data are acquired using multi-channel 16-bit ADC modules. Orbit data are sampled every millisecond. Fast orbit data are shared in a reflective memory network to support fast orbit feedback. Averaged data were updated to control database at a rate of 10 Hz. A few new generation digital BPMs were tested to evaluate their performance and functionality. This reportmore » summarizes the system structure, the software environment and the preliminary beam test of the BPM system.« less
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Current Status of the Beam Position Monitoring System at TLS
NASA Astrophysics Data System (ADS)
Kuo, C. H.; Hu, K. H.; Chen, Jenny; Lee, Demi; Wang, C. J.; Hsu, S. Y.; Hsu, K. T.
2006-11-01
The beam position monitoring system is an important part of a synchrotron light source that supports its routine operation and studies of beam physics. The Taiwan light source is equipped with 59 BPMs. Highly precise closed orbits are measured by multiplexing BPMs. Data are acquired using multi-channel 16-bit ADC modules. Orbit data are sampled every millisecond. Fast orbit data are shared in a reflective memory network to support fast orbit feedback. Averaged data were updated to control database at a rate of 10 Hz. A few new generation digital BPMs were tested to evaluate their performance and functionality. This report summarizes the system structure, the software environment and the preliminary beam test of the BPM system.
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SSL/TLS Vulnerability Detection Using Black Box Approach
NASA Astrophysics Data System (ADS)
Gunawan, D.; Sitorus, E. H.; Rahmat, R. F.; Hizriadi, A.
2018-03-01
Socket Secure Layer (SSL) and Transport Layer Security (TLS) are cryptographic protocols that provide data encryption to secure the communication over a network. However, in some cases, there are vulnerability found in the implementation of SSL/TLS because of weak cipher key, certificate validation error or session handling error. One of the most vulnerable SSL/TLS bugs is heartbleed. As the security is essential in data communication, this research aims to build a scanner that detect the SSL/TLS vulnerability by using black box approach. This research will focus on heartbleed case. In addition, this research also gathers information about existing SSL in the server. The black box approach is used to test the output of a system without knowing the process inside the system itself. For testing purpose, this research scanned websites and found that some of the websites still have SSL/TLS vulnerability. Thus, the black box approach can be used to detect the vulnerability without considering the source code and the process inside the application.
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Sail, Vibhavari; Rizzo, Alessandro A; Chatterjee, Nimrat; Dash, Radha C; Ozen, Zuleyha; Walker, Graham C; Korzhnev, Dmitry M; Hadden, M Kyle
2017-07-21
Translesion synthesis (TLS) is an important mechanism through which proliferating cells tolerate DNA damage during replication. The mutagenic Rev1/Polζ-dependent branch of TLS helps cancer cells survive first-line genotoxic chemotherapy and introduces mutations that can contribute to the acquired resistance so often observed with standard anticancer regimens. As such, inhibition of Rev1/Polζ-dependent TLS has recently emerged as a strategy to enhance the efficacy of first-line chemotherapy and reduce the acquisition of chemoresistance by decreasing tumor mutation rate. The TLS DNA polymerase Rev1 serves as an integral scaffolding protein that mediates the assembly of the active multiprotein TLS complexes. Protein-protein interactions (PPIs) between the C-terminal domain of Rev1 (Rev1-CT) and the Rev1-interacting region (RIR) of other TLS DNA polymerases play an essential role in regulating TLS activity. To probe whether disrupting the Rev1-CT/RIR PPI is a valid approach for developing a new class of targeted anticancer agents, we designed a fluorescence polarization-based assay that was utilized in a pilot screen for small molecule inhibitors of this PPI. Two small molecule scaffolds that disrupt this interaction were identified, and secondary validation assays confirmed that compound 5 binds to Rev1-CT at the RIR interface. Finally, survival and mutagenesis assays in mouse embryonic fibroblasts and human fibrosarcoma HT1080 cells treated with cisplatin and ultraviolet light indicate that these compounds inhibit mutagenic Rev1/Polζ-dependent TLS in cells, validating the Rev1-CT/RIR PPI for future anticancer drug discovery and identifying the first small molecule inhibitors of TLS that target Rev1-CT.
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From deep TLS validation to ensembles of atomic models built from elemental motions
Urzhumtsev, Alexandre; Afonine, Pavel V.; Van Benschoten, Andrew H.; ...
2015-07-28
The translation–libration–screw model first introduced by Cruickshank, Schomaker and Trueblood describes the concerted motions of atomic groups. Using TLS models can improve the agreement between calculated and experimental diffraction data. Because the T, L and S matrices describe a combination of atomic vibrations and librations, TLS models can also potentially shed light on molecular mechanisms involving correlated motions. However, this use of TLS models in mechanistic studies is hampered by the difficulties in translating the results of refinement into molecular movement or a structural ensemble. To convert the matrices into a constituent molecular movement, the matrix elements must satisfy severalmore » conditions. Refining the T, L and S matrix elements as independent parameters without taking these conditions into account may result in matrices that do not represent concerted molecular movements. Here, a mathematical framework and the computational tools to analyze TLS matrices, resulting in either explicit decomposition into descriptions of the underlying motions or a report of broken conditions, are described. The description of valid underlying motions can then be output as a structural ensemble. All methods are implemented as part of the PHENIX project.« less
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Livneh, Zvi
2006-09-01
To overcome DNA lesions that block replication the cell employs translesion DNA synthesis (TLS) polymerases, a group of low fidelity DNA polymerases that have the capacity to bypass a wide range of DNA lesions. This TLS process is also termed error-prone repair, due to its inherent mutagenic nature. We have recently shown that the tumor suppressor p53 and the cell cycle inhibitor p21 are global regulators of TLS. When these proteins are missing or nonfunctional, TLS gets out of control: its extent increases to very high levels, and its fidelity decreases, causing an overall increase in mutation load. This may be explained by the loss of selectivity in the bypass of specific DNA lesions by their cognate specialized polymerases, such that lesion bypass continues to a maximum, regardless of the price paid in increased mutations. The p53 and p21 proteins are also required for efficient UV light-induced monoubiquitination of PCNA, which is consistent with a model in which this modification of PCNA is necessary but not sufficient for the normal activity of TLS. This regulation suggests that TLS evolved in mammals as a system that balances gain in survival with a tolerable mutational cost, and that disturbing this balance causes a potentially harmful increase in mutations, which might play a role in carcinogenesis.
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Wit, Niek; Buoninfante, Olimpia Alessandra; van den Berk, Paul C.M.; Jansen, Jacob G.; Hogenbirk, Marc A.; de Wind, Niels; Jacobs, Heinz
2015-01-01
Translesion synthesis (TLS) provides a highly conserved mechanism that enables DNA synthesis on a damaged template. TLS is performed by specialized DNA polymerases of which polymerase (Pol) κ is important for the cellular response to DNA damage induced by benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE), ultraviolet (UV) light and the alkylating agent methyl methanesulfonate (MMS). As TLS polymerases are intrinsically error-prone, tight regulation of their activity is required. One level of control is provided by ubiquitination of the homotrimeric DNA clamp PCNA at lysine residue 164 (PCNA-Ub). We here show that Polκ can function independently of PCNA modification and that Polη can function as a backup during TLS of MMS-induced lesions. Compared to cell lines deficient for PCNA modification (PcnaK164R) or Polκ, double mutant cell lines display hypersensitivity to MMS but not to BPDE or UV-C. Double mutant cells also displayed delayed post-replicative TLS, accumulate higher levels of replication stress and delayed S-phase progression. Furthermore, we show that Polη and Polκ are redundant in the DNA damage bypass of MMS-induced DNA damage. Taken together, we provide evidence for PCNA-Ub-independent activation of Polκ and establish Polη as an important backup polymerase in the absence of Polκ in response to MMS-induced DNA damage. PMID:25505145
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Igl, Wilmar; Kamal-Eldin, Afaf; Johansson, Asa; Liebisch, Gerhard; Gnewuch, Carsten; Schmitz, Gerd; Gyllensten, Ulf
2013-01-01
The high intake of game meat in populations with a subsistence-based diet may affect their blood lipids and health status. To examine the association between diet and circulating levels of blood lipid levels in a northern Swedish population. We compared a group with traditional lifestyle (TLS) based on reindeer herding (TLS group) with those from the same area with a non-traditional lifestyle (NTLS) typical of more industrialized regions of Sweden (NTLS group). The analysis was based on self-reported intake of animal source food (i.e. non-game meat, game meat, fish, dairy products and eggs) and the serum blood level of a number of lipids [total cholesterol (TC), low-density lipoprotein cholesterol (LDL), high-density lipoprotein cholesterol (HDL), triglycerides (TG), glycerophospholipids and sphingolipids]. The TLS group had higher cholesterol, LDL and HDL levels than the reference group. Of the TLS group, 65% had cholesterol levels above the threshold for increased risk of coronary heart disease (≥ 240 mg/dl), as compared to 38% of the NTLS group. Self-reported consumption of game meat was positively associated with TC and LDL. The high game meat consumption of the TLS group is associated with increased cholesterol levels. High intake of animal protein and fat and low fibre is known to increase the risk of cardiovascular disease, but other studies of the TLS in northern Sweden have shown comparable incidences of cardiovascular disease to the reference (NTLS) group from the same geographical area. This indicates that factors other than TC influence disease risk. One such possible factor is dietary phospholipids, which are also found in high amounts specifically in game meat and have been shown to inhibit cholesterol absorption.
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Wit, Niek; Buoninfante, Olimpia Alessandra; van den Berk, Paul C M; Jansen, Jacob G; Hogenbirk, Marc A; de Wind, Niels; Jacobs, Heinz
2015-01-01
Translesion synthesis (TLS) provides a highly conserved mechanism that enables DNA synthesis on a damaged template. TLS is performed by specialized DNA polymerases of which polymerase (Pol) κ is important for the cellular response to DNA damage induced by benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE), ultraviolet (UV) light and the alkylating agent methyl methanesulfonate (MMS). As TLS polymerases are intrinsically error-prone, tight regulation of their activity is required. One level of control is provided by ubiquitination of the homotrimeric DNA clamp PCNA at lysine residue 164 (PCNA-Ub). We here show that Polκ can function independently of PCNA modification and that Polη can function as a backup during TLS of MMS-induced lesions. Compared to cell lines deficient for PCNA modification (Pcna(K164R)) or Polκ, double mutant cell lines display hypersensitivity to MMS but not to BPDE or UV-C. Double mutant cells also displayed delayed post-replicative TLS, accumulate higher levels of replication stress and delayed S-phase progression. Furthermore, we show that Polη and Polκ are redundant in the DNA damage bypass of MMS-induced DNA damage. Taken together, we provide evidence for PCNA-Ub-independent activation of Polκ and establish Polη as an important backup polymerase in the absence of Polκ in response to MMS-induced DNA damage. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.
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Comparing RIEGL RiCOPTER UAV LiDAR Derived Canopy Height and DBH with Terrestrial LiDAR
Bartholomeus, Harm M.; Kooistra, Lammert
2017-01-01
In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX®-1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Models (DTMs), Digital Surface Models (DSMs) and finally Canopy Height Models (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 cm higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 cm. We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB). PMID:29039755
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Comparing RIEGL RiCOPTER UAV LiDAR Derived Canopy Height and DBH with Terrestrial LiDAR.
Brede, Benjamin; Lau, Alvaro; Bartholomeus, Harm M; Kooistra, Lammert
2017-10-17
In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX ® -1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Model (DTMs), Digital Surface Model (DSMs) and finally Canopy Height Model (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 c m higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 c m . We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB).
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NASA Astrophysics Data System (ADS)
Hämmerle, M.; Lukač, N.; Chen, K.-C.; Koma, Zs.; Wang, C.-K.; Anders, K.; Höfle, B.
2017-09-01
Information about the 3D structure of understory vegetation is of high relevance in forestry research and management (e.g., for complete biomass estimations). However, it has been hardly investigated systematically with state-of-the-art methods such as static terrestrial laser scanning (TLS) or laser scanning from unmanned aerial vehicle platforms (ULS). A prominent challenge for scanning forests is posed by occlusion, calling for proper TLS scan position or ULS flight line configurations in order to achieve an accurate representation of understory vegetation. The aim of our study is to examine the effect of TLS or ULS scanning strategies on (1) the height of individual understory trees and (2) understory canopy height raster models. We simulate full-waveform TLS and ULS point clouds of a virtual forest plot captured from various combinations of max. 12 TLS scan positions or 3 ULS flight lines. The accuracy of the respective datasets is evaluated with reference values given by the virtually scanned 3D triangle mesh tree models. TLS tree height underestimations range up to 1.84 m (15.30 % of tree height) for single TLS scan positions, but combining three scan positions reduces the underestimation to maximum 0.31 m (2.41 %). Combining ULS flight lines also results in improved tree height representation, with a maximum underestimation of 0.24 m (2.15 %). The presented simulation approach offers a complementary source of information for efficient planning of field campaigns aiming at understory vegetation modelling.
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Ubiquitin mediates the physical and functional interaction between human DNA polymerases η and ι
McIntyre, Justyna; Vidal, Antonio E.; McLenigan, Mary P.; Bomar, Martha G.; Curti, Elena; McDonald, John P.; Plosky, Brian S.; Ohashi, Eiji; Woodgate, Roger
2013-01-01
Human DNA polymerases η and ι are best characterized for their ability to facilitate translesion DNA synthesis (TLS). Both polymerases (pols) co-localize in ‘replication factories’ in vivo after cells are exposed to ultraviolet light and this co-localization is mediated through a physical interaction between the two TLS pols. We have mapped the polη-ι interacting region to their respective ubiquitin-binding domains (UBZ in polη and UBM1 and UBM2 in polι), and demonstrate that ubiquitination of either TLS polymerase is a prerequisite for their physical and functional interaction. Importantly, while monoubiquitination of polη precludes its ability to interact with proliferating cell nuclear antigen (PCNA), it enhances its interaction with polι. Furthermore, a polι-ubiquitin chimera interacts avidly with both polη and PCNA. Thus, the ubiquitination status of polη, or polι plays a key regulatory function in controlling the protein partners with which each polymerase interacts, and in doing so, determines the efficiency of targeting the respective polymerase to stalled replication forks where they facilitate TLS. PMID:23248005
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Fast ground filtering for TLS data via Scanline Density Analysis
NASA Astrophysics Data System (ADS)
Che, Erzhuo; Olsen, Michael J.
2017-07-01
Terrestrial Laser Scanning (TLS) efficiently collects 3D information based on lidar (light detection and ranging) technology. TLS has been widely used in topographic mapping, engineering surveying, forestry, industrial facilities, cultural heritage, and so on. Ground filtering is a common procedure in lidar data processing, which separates the point cloud data into ground points and non-ground points. Effective ground filtering is helpful for subsequent procedures such as segmentation, classification, and modeling. Numerous ground filtering algorithms have been developed for Airborne Laser Scanning (ALS) data. However, many of these are error prone in application to TLS data because of its different angle of view and highly variable resolution. Further, many ground filtering techniques are limited in application within challenging topography and experience difficulty coping with some objects such as short vegetation, steep slopes, and so forth. Lastly, due to the large size of point cloud data, operations such as data traversing, multiple iterations, and neighbor searching significantly affect the computation efficiency. In order to overcome these challenges, we present an efficient ground filtering method for TLS data via a Scanline Density Analysis, which is very fast because it exploits the grid structure storing TLS data. The process first separates the ground candidates, density features, and unidentified points based on an analysis of point density within each scanline. Second, a region growth using the scan pattern is performed to cluster the ground candidates and further refine the ground points (clusters). In the experiment, the effectiveness, parameter robustness, and efficiency of the proposed method is demonstrated with datasets collected from an urban scene and a natural scene, respectively.
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NASA Astrophysics Data System (ADS)
Eltner, A.; Schneider, D.; Maas, H.-G.
2016-06-01
Soil erosion is a decisive earth surface process strongly influencing the fertility of arable land. Several options exist to detect soil erosion at the scale of large field plots (here 600 m²), which comprise different advantages and disadvantages depending on the applied method. In this study, the benefits of unmanned aerial vehicle (UAV) photogrammetry and terrestrial laser scanning (TLS) are exploited to quantify soil surface changes. Beforehand data combination, TLS data is co-registered to the DEMs generated with UAV photogrammetry. TLS data is used to detect global as well as local errors in the DEMs calculated from UAV images. Additionally, TLS data is considered for vegetation filtering. Complimentary, DEMs from UAV photogrammetry are utilised to detect systematic TLS errors and to further filter TLS point clouds in regard to unfavourable scan geometry (i.e. incidence angle and footprint) on gentle hillslopes. In addition, surface roughness is integrated as an important parameter to evaluate TLS point reliability because of the increasing footprints and thus area of signal reflection with increasing distance to the scanning device. The developed fusion tool allows for the estimation of reliable data points from each data source, considering the data acquisition geometry and surface properties, to finally merge both data sets into a single soil surface model. Data fusion is performed for three different field campaigns at a Mediterranean field plot. Successive DEM evaluation reveals continuous decrease of soil surface roughness, reappearance of former wheel tracks and local soil particle relocation patterns.
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Small catchments DEM creation using Unmanned Aerial Vehicles
NASA Astrophysics Data System (ADS)
Gafurov, A. M.
2018-01-01
Digital elevation models (DEM) are an important source of information on the terrain, allowing researchers to evaluate various exogenous processes. The higher the accuracy of DEM the better the level of the work possible. An important source of data for the construction of DEMs are point clouds obtained with terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAV). In this paper, we present the results of constructing a DEM on small catchments using UAVs. Estimation of the UAV DEM showed comparable accuracy with the TLS if real time kinematic Global Positioning System (RTK-GPS) ground control points (GCPs) and check points (CPs) were used. In this case, the main source of errors in the construction of DEMs are the errors in the referencing of survey results.
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Archaeal replicative primases can perform translesion DNA synthesis.
Jozwiakowski, Stanislaw K; Borazjani Gholami, Farimah; Doherty, Aidan J
2015-02-17
DNA replicases routinely stall at lesions encountered on the template strand, and translesion DNA synthesis (TLS) is used to rescue progression of stalled replisomes. This process requires specialized polymerases that perform translesion DNA synthesis. Although prokaryotes and eukaryotes possess canonical TLS polymerases (Y-family Pols) capable of traversing blocking DNA lesions, most archaea lack these enzymes. Here, we report that archaeal replicative primases (Pri S, primase small subunit) can also perform TLS. Archaeal Pri S can bypass common oxidative DNA lesions, such as 8-Oxo-2'-deoxyguanosines and UV light-induced DNA damage, faithfully bypassing cyclobutane pyrimidine dimers. Although it is well documented that archaeal replicases specifically arrest at deoxyuracils (dUs) due to recognition and binding to the lesions, a replication restart mechanism has not been identified. Here, we report that Pri S efficiently replicates past dUs, even in the presence of stalled replicase complexes, thus providing a mechanism for maintaining replication bypass of these DNA lesions. Together, these findings establish that some replicative primases, previously considered to be solely involved in priming replication, are also TLS proficient and therefore may play important roles in damage tolerance at replication forks.
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Quantifying Vegetation Structure with Lightweight, Rapid-Scanning Terrestrial Lidar
NASA Astrophysics Data System (ADS)
Paynter, I.; Genest, D.; Saenz, E. J.; Strahler, A. H.; Li, Z.; Peri, F.; Schaaf, C.
2016-12-01
Light Detection and Ranging (lidar) is proving a competent technology for observing vegetation structure. Terrestrial laser scanners (TLS) are ground-based instruments which utilize hundreds of thousands to millions of lidar observations to provide detailed structural and reflective information of their surroundings. TLS has enjoyed initial success as a validation tool for satellite and airborne estimates of vegetation structure, and are producing independent estimates with increasing accuracy. Reconstruction techniques for TLS observations of vegetation have also improved rapidly, especially for trees. However, uncertainties and challenges still remain in TLS modelling of vegetation structure, especially in geometrically complex ecosystems such as tropical forests (where observation extent and density is hampered by occlusion) and highly temporally dynamic coastal ecosystems (such as saltmarshes and mangroves), where observations may be restricted to narrow microstates. Some of these uncertainties can be mitigated, and challenges met, through the use of lidar instruments optimized for favorable deployment logistics through low weight, rapid scanning, and improved durability. We have conducted studies of vegetation structure in temperate and tropical forests, saltmarshes and mangroves, utilizing a highly portable TLS with considerable deployment flexibility, the Compact Biomass Lidar (CBL). We show results from studies in the temperate Long Term Ecological Research site of Harvard Forest (MA, USA); the tropical forested long-term Carbono sites of La Selva Biological Station (Sarapiqui, Costa Rica); and the saltmarsh LTER of Plum Island (MA, USA). These results demonstrate the improvements to observations in these ecosystems which are facilitated by the specifications of the CBL (and similar TLS) which are optimized for favorable deployment logistics and flexibility. We show the benefits of increased numbers of scanning positions, and specialized deployment platforms to meet ecosystem challenges.
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Modeling the interaction of a heavily beam loaded SRF cavity with its low-level RF feedback loops
NASA Astrophysics Data System (ADS)
Liu, Zong-Kai; Wang, Chaoen; Chang, Lung-Hai; Yeh, Meng-Shu; Chang, Fu-Yu; Chang, Mei-Hsia; Chang, Shian-Wen; Chen, Ling-Jhen; Chung, Fu-Tsai; Lin, Ming-Chyuan; Lo, Chih-Hung; Yu, Tsung-Chi
2018-06-01
A superconducting radio frequency (SRF) cavity provides superior stability to power high intensity light sources and can suppress coupled-bunch instabilities due to its smaller impedance for higher order modes. Because of these features, SRF cavities are commonly used for modern light sources, such as the TLS, CLS, DLS, SSRF, PLS-II, TPS, and NSLS-II, with an aggressive approach to operate the light sources at high beam currents. However, operating a SRF cavity at high beam currents may result with unacceptable stability problems of the low level RF (LLRF) system, due to drifts of the cavity resonant frequency caused by unexpected perturbations from the environment. As the feedback loop gets out of control, the cavity voltage may start to oscillate with a current-dependent characteristic frequency. Such situations can cause beam abort due to the activation of the interlock protection system, i.e. false alarm of quench detection. This malfunction of the light source reduces the reliability of SRF operation. Understanding this unstable mechanism to prevent its appearance becomes a primary task in the pursuit of highly reliable SRF operation. In this paper, a Pedersen model, including the response of the LLRF system, was used to simulate the beam-cavity interaction of a SRF cavity under heavy beam loading. Causes for the onset of instability at high beam current will be discussed as well as remedies to assure the design of a stable LLRF system.
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Combined loss of three DNA damage response pathways renders C. elegans intolerant to light.
van Bostelen, Ivo; Tijsterman, Marcel
2017-06-01
Infliction of DNA damage initiates a complex cellular reaction - the DNA damage response - that involves both signaling and DNA repair networks with many redundancies and parallel pathways. Here, we reveal the three strategies that the simple multicellular eukaryote, C. elegans, uses to deal with DNA damage induced by light. Separately inactivating repair or replicative bypass of photo-lesions results in cellular hypersensitivity towards UV-light, but impeding repair of replication associated DNA breaks does not. Yet, we observe an unprecedented synergistic relationship when these pathways are inactivated in combination. C. elegans mutants that lack nucleotide excision repair (NER), translesion synthesis (TLS) and alternative end joining (altEJ) grow undisturbed in the dark, but become sterile when grown in light. Even exposure to very low levels of normal daylight impedes animal growth. We show that NER and TLS operate to suppress the formation of lethal DNA breaks that require polymerase theta-mediated end joining (TMEJ) for their repair. Our data testifies to the enormous genotoxicity of light and to the demand of multiple layers of protection against an environmental threat that is so common. Copyright © 2017 Elsevier B.V. All rights reserved.
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Strata-based forest fuel classification for wild fire hazard assessment using terrestrial LiDAR
NASA Astrophysics Data System (ADS)
Chen, Yang; Zhu, Xuan; Yebra, Marta; Harris, Sarah; Tapper, Nigel
2016-10-01
Fuel structural characteristics affect fire behavior including fire intensity, spread rate, flame structure, and duration, therefore, quantifying forest fuel structure has significance in understanding fire behavior as well as providing information for fire management activities (e.g., planned burns, suppression, fuel hazard assessment, and fuel treatment). This paper presents a method of forest fuel strata classification with an integration between terrestrial light detection and ranging (LiDAR) data and geographic information system for automatically assessing forest fuel structural characteristics (e.g., fuel horizontal continuity and vertical arrangement). The accuracy of fuel description derived from terrestrial LiDAR scanning (TLS) data was assessed by field measured surface fuel depth and fuel percentage covers at distinct vertical layers. The comparison of TLS-derived depth and percentage cover at surface fuel layer with the field measurements produced root mean square error values of 1.1 cm and 5.4%, respectively. TLS-derived percentage cover explained 92% of the variation in percentage cover at all fuel layers of the entire dataset. The outcome indicated TLS-derived fuel characteristics are strongly consistent with field measured values. TLS can be used to efficiently and consistently classify forest vertical layers to provide more precise information for forest fuel hazard assessment and surface fuel load estimation in order to assist forest fuels management and fire-related operational activities. It can also be beneficial for mapping forest habitat, wildlife conservation, and ecosystem management.
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The role of optoelectronic feedback on Franz-Keldysh voltage modulation of transistor lasers
NASA Astrophysics Data System (ADS)
Chang, Chi-Hsiang; Chang, Shu-Wei; Wu, Chao-Hsin
2016-03-01
Possessing both the high-speed characteristics of heterojunction bipolar transistors (HBTs) and enhanced radiative recombination of quantum wells (QWs), the light-emitting transistor (LET) which operates in the regime of spontaneous emissions has achieved up to 4.3 GHz modulation bandwidth. A 40 Gbit/s transmission rate can be even achieved using transistor laser (TL). The transistor laser provides not only the current modulation but also direct voltage-controlled modulation scheme of optical signals via Franz-Keldysh (FK) photon-assisted tunneling effect. In this work, the effect of FK absorption on the voltage modulation of TLs is investigated. In order to analyze the dynamics and optical responses of voltage modulation in TLs, the conventional rate equations relevant to diode lasers (DLs) are first modified to include the FK effect intuitively. The theoretical results of direct-current (DC) and small-signal alternating-current (AC) characteristics of optical responses are both investigated. While the DC characteristics look physical, the intrinsic optical response of TLs under the FK voltage modulation shows an AC enhancement with a 20 dB peak, which however is not observed in experiment. A complete model composed of the intrinsic optical transfer function and an electrical transfer function fed back by optical responses is proposed to explain the behaviors of voltage modulation in TLs. The abnormal AC peak disappears through this optoelectronic feedback. With the electrical response along with FK-included photon-carrier rate equations taken into account, the complete voltage-controlled optical modulation response of TLs is demonstrated.
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Eppink, Berina; Tafel, Agnieszka A; Hanada, Katsuhiro; van Drunen, Ellen; Hickson, Ian D; Essers, Jeroen; Kanaar, Roland
2011-11-10
Ultraviolet (UV) radiation-induced DNA lesions can be efficiently repaired by nucleotide excision repair (NER). However, NER is less effective during replication of UV-damaged chromosomes. In contrast, translesion DNA synthesis (TLS) and homologous recombination (HR) are capable of dealing with lesions in replicating DNA. The core HR protein in mammalian cells is the strand exchange protein RAD51, which is aided by numerous proteins, including RAD54. We used RAD54 as a cellular marker for HR to study the response of mammalian embryonic stem (ES) cells to UV irradiation. In contrast to yeast, ES cells lacking RAD54 are not UV sensitive. Here we show that the requirement for mammalian RAD54 is masked by active NER. By genetically inactivating NER and HR through disruption of the Xpa and Rad54 genes, respectively, we demonstrate the contribution of HR to chromosomal integrity upon UV irradiation. We demonstrate using chromosome fiber analysis at the individual replication fork level, that HR activity is important for the restart of DNA replication after induction of DNA damage by UV-light in NER-deficient cells. Furthermore, our data reveal RAD54-dependent and -independent contributions of HR to the cellular sensitivity to UV-light, and they uncover that RAD54 can compensate for the loss of TLS polymerase η with regard to UV-light sensitivity. In conclusion, we show that HR is important for the progression of UV-stalled replication forks in ES cells, and that protection of the fork is an interplay between HR and TLS. Copyright © 2011 Elsevier B.V. All rights reserved.
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Time-lapse systems for embryo incubation and assessment in assisted reproduction.
Armstrong, Sarah; Bhide, Priya; Jordan, Vanessa; Pacey, Allan; Farquhar, Cindy
2018-05-25
Embryo incubation and assessment is a vital step in assisted reproductive technology (ART). Traditionally, embryo assessment has been achieved by removing embryos from a conventional incubator daily for quality assessment by an embryologist, under a light microscope. Over recent years time-lapse systems have been developed which can take digital images of embryos at frequent time intervals. This allows embryologists, with or without the assistance of embryo selection software, to assess the quality of the embryos without physically removing them from the incubator.The potential advantages of a time-lapse system (TLS) include the ability to maintain a stable culture environment, therefore limiting the exposure of embryos to changes in gas composition, temperature and movement. A TLS has the potential advantage of improving embryo selection for ART treatment by utilising additional information gained through continuously monitoring embryo development. Use of a TLS often adds significant extra cost onto an in vitro fertilisation (IVF) cycle. To determine the effect of a TLS compared to conventional embryo incubation and assessment on clinical outcomes in couples undergoing ART. We used standard methodology recommended by Cochrane. We searched the Cochrane Gynaecology and Fertility (CGF) Group trials register, CENTRAL, MEDLINE, Embase, CINAHL and two trials registers on 2 August 2017. We included randomised controlled trials (RCTs) in the following comparisons: comparing a TLS, with or without embryo selection software, versus conventional incubation with morphological assessment; and TLS with embryo selection software versus TLS without embryo selection software among couples undergoing ART. We used standard methodological procedures recommended by Cochrane. The primary review outcomes were live birth, miscarriage and stillbirth. Secondary outcomes were clinical pregnancy and cumulative clinical pregnancy. We reported quality of the evidence for important outcomes using GRADE methodology. We made the following comparisons.TLS with conventional morphological assessment of still TLS images versus conventional incubation and assessmentTLS utilising embryo selection software versus TLS with conventional morphological assessment of still TLS images TLS utilising embryo selection software versus conventional incubation and assessment MAIN RESULTS: We included eight RCTs (N = 2303 women). The quality of the evidence ranged from very low to moderate. The main limitations were imprecision and risk of bias associated with lack of blinding of participants and researchers, and indirectness secondary to significant heterogeneity between interventions in some studies. There were no data on cumulative clinical pregnancy.TLS with conventional morphological assessment of still TLS images versus conventional incubation and assessmentThere is no evidence of a difference between the interventions in terms of live birth rates (odds ratio (OR) 0.73, 95% CI 0.47 to 1.13, 2 RCTs, N = 440, I 2 = 11% , moderate-quality evidence) and may also be no evidence of difference in miscarriage rates (OR 2.25, 95% CI 0.84 to 6.02, 2 RCTs, N = 440, I 2 = 44%, low-quality evidence). The evidence suggests that if the live birth rate associated with conventional incubation and assessment is 33%, the rate with use of TLS with conventional morphological assessment of still TLS images is between 19% and 36%; and that if the miscarriage rate with conventional incubation is 3%, the rate associated with conventional morphological assessment of still TLS images would be between 3% and 18%. There is no evidence of a difference between the interventions in the stillbirth rate (OR 1.00, 95% CI 0.13 to 7.49, 1 RCT, N = 76, low-quality evidence). There is no evidence of a difference between the interventions in clinical pregnancy rates (OR 0.88, 95% CI 0.58 to 1.33, 3 RCTs, N = 489, I 2 = 0%, moderate-quality evidence).TLS utilising embryo selection software versus TLS with conventional morphological assessment of still TLS imagesNo data were available on live birth or stillbirth. We are uncertain whether TLS utilising embryo selection software influences miscarriage rates (OR 1.39, 95% CI 0.64 to 3.01, 2 RCTs, N = 463, I 2 = 0%, very low-quality evidence) and there may be no difference in clinical pregnancy rates (OR 0.97, 95% CI 0.67 to 1.42, 2 RCTs, N = 463, I 2 = 0%, low-quality evidence). The evidence suggests that if the miscarriage rate associated with assessment of still TLS images is 5%, the rate with embryo selection software would be between 3% and 14%.TLS utilising embryo selection software versus conventional incubation and assessmentThere is no evidence of a difference between TLS utilising embryo selection software and conventional incubation improving live birth rates (OR 1.21, 95% CI 0.96 to 1.54, 2 RCTs, N = 1017, I 2 = 0%, very low-quality evidence). We are uncertain whether TLS influences miscarriage rates (OR 0.73, 95% CI 0.49 to 1.08, 3 RCTs, N = 1351, I 2 = 0%, very low-quality evidence). The evidence suggests that if the live birth rate associated with no TLS is 38%, the rate with use of conventional incubation would be between 36% and 58%, and that if miscarriage rate with conventional incubation is 9%, the rate associated with TLS would be between 4% and 10%. No data on stillbirths were available. It was uncertain whether the intervention influenced clinical pregnancy rates (OR 1.17, 95% CI 0.94 to 1.45, 3 RCTs, N = 1351, I 2 = 42%, very low-quality evidence). There is insufficient evidence of differences in live birth, miscarriage, stillbirth or clinical pregnancy to choose between TLS, with or without embryo selection software, and conventional incubation. The studies were at high risk of bias for randomisation and allocation concealment, the result should be interpreted with extreme caution.
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Status of the Superconducting Insertion Device Control at TLS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Hu, K. H.; Wang, C. J.; Lee, Demi
2007-01-19
Superconducting insertion devices are installed at Taiwan Light Source to meet the rapidly growing demand of X-ray users. A control system supports the operation of all these superconducting insertion devices. Control system coordinates the operation of the main power supply and the trimming power supply to charge/discharge the magnet and provide essential interlock protection for the coils and vacuum ducts. Quench protection and various cryogenic interlocks are designed to prevent damage to the magnet. A friendly user interface supports routine operation. Various applications are also developed to aid the operation of these insertion devices. Design consideration and details of themore » implementation will be summarized in this report.« less
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Cui, Wei; Yoneda, Ryoma; Ueda, Naomi; Kurokawa, Riki
2018-05-21
Translocated in liposarcoma (TLS) is an RNA-binding protein and a transcription-regulatory sensor of DNA damage. TLS binds promoter-associated noncoding RNA (pncRNA) and inhibits histone acetyltransferase (HAT) activity of CREB-binding protein (CBP)/E1A-binding protein P300 (p300) on the cyclin D1 (CCND1) gene. Although post-translational modifications of TLS, such as arginine methylation, are known to regulate TLS's nucleocytoplasmic shuttling and assembly in stress granules, its interactions with RNAs remain poorly characterized. Herein, using various biochemical assays, we confirmed the earlier observations that TLS is methylated by protein arginine methyltransferase 1 (PRMT1) in vitro. The arginine methylation of TLS disrupted binding to pncRNA and also prevented binding of TLS to and inhibition of CBP/p300. This result indicated that arginine methylation of TLS abrogates both binding to pncRNA and TLS-mediated inhibition of CBP/p300 HAT activities. We also report that an arginine residue within the Arg-Gly-Gly domain of TLS, Arg-476, serves as the major determinant for binding to pncRNA. Either methylation or mutation of Arg-476 of TLS significantly decreased pncRNA binding and thereby prevented a pncRNA-induced allosteric alteration in TLS that is required for its interaction with CBP/p300. Moreover, unlike wildtype TLS, an R476A TLS mutant did not inhibit CCND1 promoter activity in luciferase reporter assays. Taken together, we propose the hypothesis that arginine methylation of TLS regulates both TLS-nucleic acid and TLS-protein interactions and thereby participates in transcriptional regulation. Published under license by The American Society for Biochemistry and Molecular Biology, Inc.
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NASA Astrophysics Data System (ADS)
Zhou, X.; Wang, G.; Yan, B.; Kearns, T.
2016-12-01
Terrestrial laser scanning (TLS) techniques have been proven to be efficient tools to collect three-dimensional high-density and high-accuracy point clouds for coastal research and resource management. However, the processing and presenting of massive TLS data is always a challenge for research when targeting a large area with high-resolution. This article introduces a workflow using shell-scripting techniques to chain together tools from the Generic Mapping Tools (GMT), Geographic Resources Analysis Support System (GRASS), and other command-based open-source utilities for automating TLS data processing. TLS point clouds acquired in the beach and dune area near Freeport, Texas in May 2015 were used for the case study. Shell scripts for rotating the coordinate system, removing anomalous points, assessing data quality, generating high-accuracy bare-earth DEMs, and quantifying beach and sand dune features (shoreline, cross-dune section, dune ridge, toe, and volume) are presented in this article. According to this investigation, the accuracy of the laser measurements (distance from the scanner to the targets) is within a couple of centimeters. However, the positional accuracy of TLS points with respect to a global coordinate system is about 5 cm, which is dominated by the accuracy of GPS solutions for obtaining the positions of the scanner and reflector. The accuracy of TLS-derived bare-earth DEM is primarily determined by the size of grid cells and roughness of the terrain surface for the case study. A DEM with grid cells of 4m x 1m (shoreline by cross-shore) provides a suitable spatial resolution and accuracy for deriving major beach and dune features.
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FUS/TLS acts as an aggregation-dependent modifier of polyglutamine disease model mice.
Kino, Yoshihiro; Washizu, Chika; Kurosawa, Masaru; Yamada, Mizuki; Doi, Hiroshi; Takumi, Toru; Adachi, Hiroaki; Katsuno, Masahisa; Sobue, Gen; Hicks, Geoffrey G; Hattori, Nobutaka; Shimogori, Tomomi; Nukina, Nobuyuki
2016-10-14
FUS/TLS is an RNA/DNA-binding protein associated with neurodegenerative diseases including amyotrophic lateral sclerosis and frontotemporal lobar degeneration. Previously, we found that a prion-like domain in the N-terminus of FUS/TLS mediates co-aggregation between FUS/TLS and mutant huntingtin, the gene product of Huntington's disease (HD). Here, we show that heterozygous knockout of FUS/TLS worsened the phenotypes of model mice of (HD, but not spinal and bulbar muscular atrophy (SBMA). This difference was correlated with the degree of pathological association between disease proteins and FUS/TLS. Co-aggregation between FUS/TLS and mutant huntingtin resulted in the depletion of free FUS/TLS protein in HD mice that was detected as a monomer in SDS-PAGE analysis. Recently, we found that FUS/TLS paralogs, TAF15 and EWS, were up-regulated in homozygous FUS/TLS knockout mice. These two proteins were up-regulated in both HD and FUS/TLS heterozygote mice, and were further elevated in HD-TLS +/- double mutant mice, consistent with the functional impairment of FUS/TLS. These results suggest that FUS/TLS sequestration by co-aggregation is a rate-limiting factor of disease phenotypes of HD and that inclusions may have an adverse aspect, rather than being simply benign or protective. In addition, our results highlight inclusions as repositories of potential modifiers of neurodegeneration.
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NASA Astrophysics Data System (ADS)
Xiong, L.; Wang, G.; Wessel, P.
2017-12-01
Terrestrial laser scanning (TLS), also known as ground-based Light Detection and Ranging (LiDAR), has been frequently applied to build bare-earth digital elevation models (DEMs) for high-accuracy geomorphology studies. The point clouds acquired from TLS often achieve a spatial resolution at fingerprint (e.g., 3cm×3cm) to handprint (e.g., 10cm×10cm) level. A downsampling process has to be applied to decimate the massive point clouds and obtain portable DEMs. It is well known that downsampling can result in aliasing that causes different signal components to become indistinguishable when the signal is reconstructed from the datasets with a lower sampling rate. Conventional DEMs are mainly the results of upsampling of sparse elevation measurements from land surveying, satellite remote sensing, and aerial photography. As a consequence, the effects of aliasing have not been fully investigated in the open literature of DEMs. This study aims to investigate the spatial aliasing problem and implement an anti-aliasing procedure of regridding dense TLS data. The TLS data collected in the beach and dune area near Freeport, Texas in the summer of 2015 are used for this study. The core idea of the anti-aliasing procedure is to apply a low-pass spatial filter prior to conducting downsampling. This article describes the successful use of a fourth-order Butterworth low-pass spatial filter employed in the Generic Mapping Tools (GMT) software package as anti-aliasing filters. The filter can be applied as an isotropic filter with a single cutoff wavelength or as an anisotropic filter with different cutoff wavelengths in the X and Y directions. The cutoff wavelength for the isotropic filter is recommended to be three times the grid size of the target DEM.
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NASA Astrophysics Data System (ADS)
Xiong, Lin.; Wang, Guoquan; Wessel, Paul
2017-03-01
Terrestrial laser scanning (TLS), also known as ground-based Light Detection and Ranging (LiDAR), has been frequently applied to build bare-earth digital elevation models (DEMs) for high-accuracy geomorphology studies. The point clouds acquired from TLS often achieve a spatial resolution at fingerprint (e.g., 3 cm×3 cm) to handprint (e.g., 10 cm×10 cm) level. A downsampling process has to be applied to decimate the massive point clouds and obtain manageable DEMs. It is well known that downsampling can result in aliasing that causes different signal components to become indistinguishable when the signal is reconstructed from the datasets with a lower sampling rate. Conventional DEMs are mainly the results of upsampling of sparse elevation measurements from land surveying, satellite remote sensing, and aerial photography. As a consequence, the effects of aliasing caused by downsampling have not been fully investigated in the open literature of DEMs. This study aims to investigate the spatial aliasing problem of regridding dense TLS data. The TLS data collected from the beach and dune area near Freeport, Texas in the summer of 2015 are used for this study. The core idea of the anti-aliasing procedure is to apply a low-pass spatial filter prior to conducting downsampling. This article describes the successful use of a fourth-order Butterworth low-pass spatial filter employed in the Generic Mapping Tools (GMT) software package as an anti-aliasing filter. The filter can be applied as an isotropic filter with a single cutoff wavelength or as an anisotropic filter with two different cutoff wavelengths in the X and Y directions. The cutoff wavelength for the isotropic filter is recommended to be three times the grid size of the target DEM.
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NASA Astrophysics Data System (ADS)
Steiner, A. K.; Kirchengast, G.; Borsche, M.; Foelsche, U.; Schoengassner, T.
2007-11-01
Long-term upper air temperature records have been established by different groups with considerable effort from radiosonde data and from satellite based (Advanced) Microwave Sounding Unit (MSU/AMSU) measurements, the latter providing information on layer-average stratospheric and tropospheric brightness temperatures. Comparisons of the temperature series show discrepancies not only with respect to radiosonde data but also between MSU data sets stemming from different retrievals. In this context the Global Navigation Satellite System radio occultation (RO) technique offers new possibilities by providing high quality observations of the atmosphere in an active limb sounding mode. RO temperature climatologies have been constructed at the WegCenter/UniGraz based on RO observations of the CHAllenging Minisatellite Payload for geoscientific research (CHAMP) satellite since September 2001, and based on a few months of RO data from other satellite missions (SAC-C, GRACE, COSMIC). Focusing on the MSU lower stratosphere channel (TLS), synthetic TLS temperatures were calculated by applying global weighting functions to zonal-mean monthly mean RO temperature climatology profiles for September 2001-December 2006. These synthetic CHAMP TLS temperatures were compared to recent MSU TLS records from the University of Alabama in Huntsville (UAH, USA) and from Remote Sensing Systems (RSS, USA), as well as to synthetic TLS temperatures from HadAT2 radiosonde data (Hadley Centre/MetOffice, UK) and ECMWF (European Centre for Medium-Range Weather Forecasts) analyses. In terms of TLS temperature anomalies, overall very good agreement of CHAMP temperature anomalies with UAH, RSS, and ECMWF anomalies was found for intra-annual variability (RMS difference of de-trended data <0.1 K globally, 0.1 K in the tropics, <0.25 K in the extratropics), while HadAT2 anomalies show larger differences (factor of two globally and more in the extratropics). Regarding 2001-2006 trends, UAH and RSS exhibit a statistically significant cooling trend difference to CHAMP globally (-0.30 to -0.36 K/5 yrs), stemming mainly from the tropics (-0.40 to -0.42 K/5 yrs), while in the extratropics the cooling trend differences are not significant. The contribution of known error sources regarding the RO data and the related synthetic-MSU computation procedure is about an order of magnitude smaller than these trend differences. Resolution of the trend discrepancy thus requires either additional, so far overlooked, sources of error in the RO TLS record or the presence of currently unresolved biases in the MSU records. SAC-C, GRACE, and COSMIC TLS temperatures closely match CHAMP temperatures, indicating the consistency and homogeneity of the RO data series. The results underpin the benefit of having multiple independent estimates of the same variable from different instruments for detecting residual weaknesses in otherwise high-quality climate records. Continued inter-comparison, and exploiting the traceability of the RO data to the universal time standard (UTC), then enables us to further reduce the uncertainty in the climate records in absolute terms.
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Anderson, Kyle E.; Glenn, Nancy F.; Spaete, Lucas P.; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.
2018-01-01
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature vegetation across large plots. We collected high-definition TLS scans of 26 1-ha plots in desert grasslands and big sagebrush shrublands in southwest Idaho, USA. We used the Random Forests machine learning algorithm to develop decision tree models predicting the biomass and canopy cover of several vegetation classes from statistical descriptors of the aboveground heights of TLS points. Manual measurements of vegetation characteristics collected within each plot served as training and validation data. Models based on five or fewer TLS descriptors of vegetation heights were developed to predict the canopy cover fraction of shrubs (R2 = 0.77, RMSE = 7%), annual grasses (R2 = 0.70, RMSE = 21%), perennial grasses (R2 = 0.36, RMSE = 12%), forbs (R2 = 0.52, RMSE = 6%), bare earth or litter (R2 = 0.49, RMSE = 19%), and the biomass of shrubs (R2 = 0.71, RMSE = 175 g) and herbaceous vegetation (R2 = 0.61, RMSE = 99 g) (all values reported are out-of-bag). Our models explained much of the variability between predictions and manual measurements, and yet we expect that future applications could produce even better results by reducing some of the methodological sources of error that we encountered. Our work demonstrates how TLS can be used efficiently to extend manual measurement of vegetation characteristics from small to large plots in grasslands and shrublands, with potential application to other similarly structured ecosystems. Our method shows that vegetation structural characteristics can be modeled without classifying and delineating individual plants, a challenging and time-consuming step common in previous methods applying TLS to vegetation inventory. Improving application of TLS to studies of shrub-steppe ecosystems will serve immediate management needs by enhancing vegetation inventories, environmental modeling studies, and the ability to train broader datasets collected from air and space.
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NASA Astrophysics Data System (ADS)
Savinainen, Antti; Mäkynen, Asko; Nieminen, Pasi; Viiri, Jouni
2017-02-01
This paper presents a research-based teaching-learning sequence (TLS) that focuses on the notion of interaction in teaching Newton's third law (N3 law) which is, as earlier studies have shown, a challenging topic for students to learn. The TLS made systematic use of a visual representation tool—an interaction diagram (ID)—highlighting interactions between objects and addressing the learning demand related to N3 law. This approach had been successful in enhancing students' understanding of N3 law in pilot studies conducted by teacher-researchers. However, it was unclear whether teachers, who have neither been involved with the research nor received intensive tutoring, could replicate the positive results in ordinary school settings. To address this question, we present an empirical study conducted in 10 Finnish upper secondary schools with students ( n = 261, aged 16) taking their mandatory physics course. The study design involved three groups: the heavy ID group (the TLS with seven to eight exercises on IDs), the light ID group (two to three exercises on IDs) and the no ID group (no exercises on IDs). The heavy and light ID groups answered eight ID questions, and all the students answered four questions on N3 law after teaching the force concept. The findings clearly suggest that systematic use of the IDs in teaching the force concept significantly fostered students' understanding of N3 law even with teachers who have no intensive tutoring or research background.
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Yasu, Takeo; Kobayashi, Shunsuke; Horii, Mai; Kurokawa, Yosuke
2016-12-01
Tumor lysis syndrome (TLS) is a life-threatening oncologic emergency. The control of serum uric acid level (UA) is important for prevention of TLS. Febuxostat has demonstrated its superiority over allopurinol in decreasing UA level. We retrospectively evaluated the efficacy of febuxostat 10 mg in prevention of hyperuricemia associated with TLS (HU-TLS) in 12 patients with non-Hodgkin's lymphoma (NHL). Mean UA levels were found to significantly decrease (p = 0.003). HU-TLS was prevented in all patients. Thus, febuxostat 10 mg is effective in prevention of HU-TLS. Future study is need to determine whether the incidence of HU-TLS change with dosage of febuxostat. .
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[Clinical feature of ALS with communication disturbance; the possibility to communicate in TLS].
Nagao, Masahiro
2013-01-01
In the subsets of amyotrohic lateral sclerosis (ALS), totally-locked in state (TLS) is shown as the result of marked progression of motor neuron degeneration. In TLS, patients are impossible to move any voluntary muscles. As the result, patients with TLS cannot communicate with any augmentative and alternative communication devices(AACD) at present. To find the AACD that enables for TLS to communicate, we examined the clinical character, brain MRI, SPECT and evoked potentials in TLS. Brain MRI showed marked brain atrophy including the brainstem, but the occipital lobe was spared. SPECT and visual evoked potentials (VEP) showed preserved physiological function of the occipital lobe in TLS. The results suggest that neuronal degeneration in TLS is not restricted to motor system, but that the visual pathways are spared. Patients with TLS may be possible to use AACD that utilize the visual pathway.
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The Status of the Taiwan Photon Source
DOE Office of Scientific and Technical Information (OSTI.GOV)
Kuo, C. C.; Wang, J. P.; Chen, J. R.
2010-06-23
NSRRC has been operating a 1.5 GeV synchrotron light source, the Taiwan Light Source (TLS), for over 15 years and has established a large user community. For the future development of synchrotron radiation research in Taiwan, a feasibility study report to construct a 3.0 GeV low-emittance storage ring, the Taiwan Photon Source (TPS), was issued in July 2005. The government approval of the TPS project was obtained in December 2007 and the machine will be built at current site of NSRRC. The project has progressed steadily since and reached several major milestones now: the architect firm has finished the sitemore » plan and civil design, the accelerator design has been fixed, and purchase of long-lead items begins its course. The TPS storage ring has a circumference of 518.4 meters with a concentric booster of 496.8 meters. The storage ring adopted a 24-cell double-bend structure with a 1.6 nm-rad natural emittance. There are six 12-m and eighteen 7-m ID straights. For user research, five new beamlines have been selected for the Phase I operations: the micro protein crystallography, the materials sub-micron diffraction, the inelastic soft x-ray scattering, the coherent x-ray scattering, and the nano probe beamlines. The civil construction is getting ready to start. The commissioning of the TPS storage ring is targeted for 2013.« less
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Characterizing Sorghum Panicles using 3D Point Clouds
NASA Astrophysics Data System (ADS)
Lonesome, M.; Popescu, S. C.; Horne, D. W.; Pugh, N. A.; Rooney, W.
2017-12-01
To address demands of population growth and impacts of global climate change, plant breeders must increase crop yield through genetic improvement. However, plant phenotyping, the characterization of a plant's physical attributes, remains a primary bottleneck in modern crop improvement programs. 3D point clouds generated from terrestrial laser scanning (TLS) and unmanned aerial systems (UAS) based structure from motion (SfM) are a promising data source to increase the efficiency of screening plant material in breeding programs. This study develops and evaluates methods for characterizing sorghum (Sorghum bicolor) panicles (heads) in field plots from both TLS and UAS-based SfM point clouds. The TLS point cloud over experimental sorghum field at Texas A&M farm in Burleston County TX were collected using a FARO Focus X330 3D laser scanner. SfM point cloud was generated from UAS imagery captured using a Phantom 3 Professional UAS at 10m altitude and 85% image overlap. The panicle detection method applies point cloud reflectance, height and point density attributes characteristic of sorghum panicles to detect them and estimate their dimensions (panicle length and width) through image classification and clustering procedures. We compare the derived panicle counts and panicle sizes with field-based and manually digitized measurements in selected plots and study the strengths and limitations of each data source for sorghum panicle characterization.
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NASA Astrophysics Data System (ADS)
McKenna, Mark Joseph
Amorphous materials have different low temperature, T <=q 10K, properties than their crystalline counterparts. The "Two level Tunneling System", (TLS), model has been very successful in explaining many of these differences, for example: a specific heat term linearly dependent on temperature, a sound velocity which increases as lnT at low temperatures, and an amplitude dependent ultrasonic attenuation. We have studied several systems in this context with emphasis on the determination of the density of states of the TLS through measurements of sound velocity changes for 0.27 K < T < 5K in the 5-30 MHz frequency range. In conjunction with x-ray diffraction and differential scanning calorimetry, (DSC), measurements, we used this TLS density of states to measure solid state amorphization in the mechanical alloying process, where elemental crystalline powders are alloyed and amorphized by repeated deformation, fragmenting and cold welding. We find the low temperature ultrasonic characteristics of amorphous Pd_ {0.775}Si_{0.165} Cu_{0.060}, produced by mechanical alloying in an inert atmosphere, are comparable with those for the amorphous alloys prepared by rapid solidification. If the milling takes place in air, rather than in argon, we find that following amorphization in the early stages of mechanical alloying, recrystallization occurs in the amorphous powders with extended milling. We have used these three methods: ultrasonic velocity changes, DSC measurements, x-ray measurements, to study the crystallization of mechanically alloyed PdSiCu and have compared the results with those for rapidly solidified PdSiCu. We find the ultrasonic properties of the amorphous alloys produced by grinding the recrystallized PdSiCu alloy are similar to those of both the mechanically alloyed and the rapidly solidified metallic glass. We have discussed our results with regard to the various models for the amorphization mechanism. Ultrasonic velocity measurements were used to study the interactions of TLS with phonons and with electrons in the high T_{rm c} superconductor, YBa_2Cu _3O_{7-delta} , and in a niobium compact, a conventional BCS superconductor, at temperatures below 1K, i.e. for T << T_{rm c}. The high T_{rm c} superconductors exhibit TLS relaxation typically found in normal metallic glasses, whereas the TLS in the niobium compact relax through interactions with phonons. We also have studied the dependence of the density of states of the TLS on the oxygen content. We find an interesting dependence of the density of states with transition temperature and with oxygen content: a decreasing density of states of the TLS with decreasing transition temperature. We interpret these results in light of recent electron diffraction measurements on the increasing ordering of oxygen vacancies with decreasing oxygen content, increasing delta..
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Suzuki, Naoki; Kato, Shinsuke; Kato, Masako; Warita, Hitoshi; Mizuno, Hideki; Kato, Masaaki; Shimakura, Naoko; Akiyama, Haruhiko; Kobayashi, Zen; Konno, Hidehiko; Aoki, Masashi
2012-09-01
Basophilic inclusions (BIs) are pathological features of a subset of frontotemporal lobar degeneration disorders, including sporadic amyotrophic lateral sclerosis (ALS) and familial ALS (FALS). Mutations in the fused in sarcoma/translocated in liposarcoma (FUS/TLS) gene have recently been identified as a cause of FALS. The FUS/TLS-immunoreactive inclusions are consistently found in cases of frontotemporal lobar degeneration with BIs; however, the association between ALS cases with BIs and FUS/TLS accumulation is not well understood. We used immunohistochemistry to analyze 3 autopsy cases of FALS with the FUS/TLS mutation and with BIs using anti-FUS/TLS antibodies. The disease durations were 1, 3, and 9 years. As the disease duration becomes longer, there were broader distributions of neuronal and glial FUS/TLS-immunoreactive inclusions. As early as 1 year after the onset, BIs, neuronal cytoplasmic inclusions and glial cytoplasmic inclusions were found in the substantia nigra in addition to the anterior horn of the spinal cord. Glial cytoplasmic inclusions are found earlier and in a wider distribution than neuronal cytoplasmic inclusions. The distribution of FUS/TLS-immunoreactive inclusions in FUS/TLS-mutated FALS with BIs was broader than that of BIs alone, suggesting that the pathogenetic mechanism may have originated from the FUS/TLS proteinopathy.
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Zacher, Denise; Liu, Jianing; Huber, Klaus; Fischer, Roland A
2009-03-07
The formation of [Cu(3)(btc)(2)] (HKUST-1; btc = 1,3,5-benzenetricarboxylate) nanocrystals from a super-saturated mother solution at room temperature was monitored by time-resolved light scattering (TLS); the system is characterized by a rapid growth up to a size limit of 200 nm within a few minutes, and the size and shape of the crystallites were also determined by scanning electron microscopy (SEM).
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A Proposal of TLS Implementation for Cross Certification Model
NASA Astrophysics Data System (ADS)
Kaji, Tadashi; Fujishiro, Takahiro; Tezuka, Satoru
Today, TLS is widely used for achieving a secure communication system. And TLS is used PKI for server authentication and/or client authentication. However, its PKI environment, which is called as “multiple trust anchors environment,” causes the problem that the verifier has to maintain huge number of CA certificates in the ubiquitous network because the increase of terminals connected to the network brings the increase of CAs. However, most of terminals in the ubiquitous network will not have enough memory to hold such huge number of CA certificates. Therefore, another PKI environment, “cross certification environment”, is useful for the ubiquitous network. But, because current TLS is designed for the multiple trust anchors model, TLS cannot work efficiently on the cross-certification model. This paper proposes a TLS implementation method to support the cross certification model efficiently. Our proposal reduces the size of exchanged messages between the TLS client and the TLS server during the handshake process. Therefore, our proposal is suitable for implementing TLS in the terminals that do not have enough computing power and memory in ubiquitous network.
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Fast Edge Detection and Segmentation of Terrestrial Laser Scans Through Normal Variation Analysis
NASA Astrophysics Data System (ADS)
Che, E.; Olsen, M. J.
2017-09-01
Terrestrial Laser Scanning (TLS) utilizes light detection and ranging (lidar) to effectively and efficiently acquire point cloud data for a wide variety of applications. Segmentation is a common procedure of post-processing to group the point cloud into a number of clusters to simplify the data for the sequential modelling and analysis needed for most applications. This paper presents a novel method to rapidly segment TLS data based on edge detection and region growing. First, by computing the projected incidence angles and performing the normal variation analysis, the silhouette edges and intersection edges are separated from the smooth surfaces. Then a modified region growing algorithm groups the points lying on the same smooth surface. The proposed method efficiently exploits the gridded scan pattern utilized during acquisition of TLS data from most sensors and takes advantage of parallel programming to process approximately 1 million points per second. Moreover, the proposed segmentation does not require estimation of the normal at each point, which limits the errors in normal estimation propagating to segmentation. Both an indoor and outdoor scene are used for an experiment to demonstrate and discuss the effectiveness and robustness of the proposed segmentation method.
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Application of terrestrial laser scanner on tidal flat morphology at a typhoon event timescale
NASA Astrophysics Data System (ADS)
Xie, Weiming; He, Qing; Zhang, Keqi; Guo, Leicheng; Wang, Xianye; Shen, Jian; Cui, Zheng
2017-09-01
Quantification of tidal flat morphological changes at varying timescales is critical from a management point of view. High-resolution tidal flat morphology data, including those for mudflats and salt-marshes, are rare due to monitoring difficulty by traditional methods. Recent advances in Terrestrial Laser Scanner (TLS) technology allow rapid acquisition of high-resolution and large-scale morphological data, but it remains problematic for its application on salt-marshes due to the presence of dense vegetation. In this study, we applied a TLS system to retrieve high-accuracy digital elevation models in a tidal flat of the Yangtze Estuary by using a robust and accurate Progressive Morphological filter (PM) to separate ground and non-ground points. Validations against GPS-supported RTK measurements suggested remarkable performance. In this case the average estimation error was about 0.3 cm, while the Root Mean Square Error (RMSE) was 2.0 cm. We conducted three TLS surveys on the same field including salt-marshes and mudflats at the time points 5 days before, 3 days after, and 45 days after a typhoon event. The retrieved data showed that the mudflats suffered from profound erosion while the salt-marshes slightly accreted during the typhoon period. The average elevation change of the total area was about - 4 cm (- 0.28 cm per day). However, both the mudflats and salt-marshes deposited in the post-typhoon period and the accretion over salt-marshes occurred at a higher rate than that during the typhoon. The elevation of the total area increased by 15.9 cm (0.37 cm per day), suggesting fast recovery under calm conditions. Quantification of the erosion and deposition rates was aided by the high quality TLS data. This study shows the effectiveness of TLS in quantifying morphological changes of tidal flats at an event (and post-event) timescale. The data and analysis also provide sound evidence on vegetation impact in stimulating salt-marsh development and restoration, shedding lights on bio-morphological interactions.
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a Comparison of Uav and Tls Data for Soil Roughness Assessment
NASA Astrophysics Data System (ADS)
Milenković, M.; Karel, W.; Ressl, C.; Pfeifer, N.
2016-06-01
Soil roughness represents fine-scale surface geometry which figures in many geophysical models. While static photogrammetric techniques (terrestrial images and laser scanning) have been recently proposed as a new source for deriving roughness heights, there is still need to overcome acquisition scale and viewing geometry issues. By contrast to the static techniques, images taken from unmanned aerial vehicles (UAV) can maintain near-nadir looking geometry over scales of several agricultural fields. This paper presents a pilot study on high-resolution, soil roughness reconstruction and assessment from UAV images over an agricultural plot. As a reference method, terrestrial laser scanning (TLS) was applied on a 10 m x 1.5 m subplot. The UAV images were self-calibrated and oriented within a bundle adjustment, and processed further up to a dense-matched digital surface model (DSM). The analysis of the UAV- and TLS-DSMs were performed in the spatial domain based on the surface autocorrelation function and the correlation length, and in the frequency domain based on the roughness spectrum and the surface fractal dimension (spectral slope). The TLS- and UAV-DSM differences were found to be under ±1 cm, while the UAV DSM showed a systematic pattern below this scale, which was explained by weakly tied sub-blocks of the bundle block. The results also confirmed that the existing TLS methods leads to roughness assessment up to 5 mm resolution. However, for our UAV data, this was not possible to achieve, though it was shown that for spatial scales of 12 cm and larger, both methods appear to be usable. Additionally, this paper suggests a method to propagate measurement errors to the correlation length.
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Newman, M; Newman, R; Hughes, T; Vadher, K; Barker, K L
2018-04-01
Timed loaded standing (TLS) is a suggested measure of back muscle endurance for people with vertebral osteoporosis. Surface electromyography revealed back muscles work harder and fatigue during TLS. The test end-point and total time were associated with back fatigue. The findings help demonstrate the concurrent validity of the TLS test. The TLS test is suggested as a measure of back muscle endurance for patients with vertebral osteoporosis. However, to date, no study has demonstrated that TLS does measure back extensor or erector spinae (ES) muscle endurance. We used surface electromyography (sEMG) to investigate the performance of the thoracic ES muscles during TLS. Thirty-six people with vertebral osteoporosis with a mean age of 71.6 (range 45-86) years participated. sEMG recordings were made of the ES at T3 and T12 bilaterally during quiet standing (QS) and TLS. The relative (%) change in sEMG amplitude between conditions was compared. Fatigue was evaluated by analysing the change in median frequency (MF) of the sEMG signal during TLS, and the correlation between maximal TLS time and rate of MF decline was examined. Activity in the ES increased significantly during TLS at all electrode locations. During TLS, the MF declined at a mean rate of -24.2% per minute (95% C.I. -26.5 to -21.9%). The MF slope and test time were strongly correlated (r 2 = 0.71), and at test end, the final MF dropped to an average 89% (95% C.I. 85 to 93%) of initial MF. Twenty-eight participants (78%) reported fatigue was the main reason for stopping, and for eight (22%), it was pain. This study demonstrates that TLS challenges the ES muscles in the thoracic region and results in ES fatigue. Endurance time and the point at which the TLS test ends are strongly related to ES fatigue.
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Afonine, Pavel V.; Adams, Paul D.; Urzhumtsev, Alexandre
2018-06-08
TLS modelling was developed by Schomaker and Trueblood to describe atomic displacement parameters through concerted (rigid-body) harmonic motions of an atomic group [Schomaker & Trueblood (1968), Acta Cryst. B 24 , 63–76]. The results of a TLS refinement are T , L and S matrices that provide individual anisotropic atomic displacement parameters (ADPs) for all atoms belonging to the group. These ADPs can be calculated analytically using a formula that relates the elements of the TLS matrices to atomic parameters. Alternatively, ADPs can be obtained numerically from the parameters of concerted atomic motions corresponding to the TLS matrices. Both proceduresmore » are expected to produce the same ADP values and therefore can be used to assess the results of TLS refinement. Here, the implementation of this approach in PHENIX is described and several illustrations, including the use of all models from the PDB that have been subjected to TLS refinement, are provided.« less
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Afonine, Pavel V.; Adams, Paul D.; Urzhumtsev, Alexandre
TLS modelling was developed by Schomaker and Trueblood to describe atomic displacement parameters through concerted (rigid-body) harmonic motions of an atomic group [Schomaker & Trueblood (1968), Acta Cryst. B 24 , 63–76]. The results of a TLS refinement are T , L and S matrices that provide individual anisotropic atomic displacement parameters (ADPs) for all atoms belonging to the group. These ADPs can be calculated analytically using a formula that relates the elements of the TLS matrices to atomic parameters. Alternatively, ADPs can be obtained numerically from the parameters of concerted atomic motions corresponding to the TLS matrices. Both proceduresmore » are expected to produce the same ADP values and therefore can be used to assess the results of TLS refinement. Here, the implementation of this approach in PHENIX is described and several illustrations, including the use of all models from the PDB that have been subjected to TLS refinement, are provided.« less
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NASA Astrophysics Data System (ADS)
Burnett, J.; Faoro, L.; Lindström, T.
2016-04-01
1/f noise caused by microscopic two-level systems (TLS) is known to be very detrimental to the performance of superconducting quantum devices but the nature of these TLS is still poorly understood. Recent experiments with superconducting resonators indicates that interaction between TLS in the oxide at the film-substrate interface is not negligible. Here we present data on the loss and 1/f frequency noise from two different Nb resonators with and without Pt capping and discuss what conclusions can be drawn regarding the properties of TLS in amorphous oxides. We also estimate the concentration and dipole moment of the TLS.
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Liu, Xia; Tsang, Julia Y S; Hlaing, Thazin; Hu, Jintao; Ni, Yun-Bi; Chan, Siu Ki; Cheung, Sai Yin; Tse, Gary M
2017-11-01
The presence of tumor infiltrating lymphocytes (TIL) is associated with favorable prognosis. Recent evidence suggested that not only their density, but also the spatial organization as tertiary lymphoid structures (TLS), play a key role in determining patient survival. In a cohort of 248 breast cancers, the clinicopathologic association and prognostic role of TLS was examined. Tertiary lymphoid structures were associated with higher tumor grade, apocrine phenotype, necrosis, extensive in situ component, lymphovascular invasion (LVI), and high TIL. For biomarkers, TLS were associated with hormone receptors negativity, HER2 positivity, and c-kit expression. Tertiary lymphoid structures were significantly related to better disease-free survival (DFS) in HER2 positive (HER2+) breast cancers (log-rank = 4.054), which was not dependent on high TIL status. The combined TLS and TIL status was an independent favorable factor associated with DFS in those cases. Interestingly, tumor cell infiltration into the TLS was found in 41.9% of TLS positive cases. It was associated with LVI in HER2 negative (HER2-) TLS positive (particularly estrogen receptor positive [ER+] HER2-) cases. In the ER+ HER2- cases, tumor cell infiltration into TLS was also associated with increased pathologic nodal stage (pN) stage and nodal involvement. Tertiary lymphoid structures showed a similar relationship with clinicopathologic features and biomarkers as TIL. The presence of TLS, irrespective of TIL level, could be an important favorable prognostic indicator in HER2+ breast cancer patients. Given the significance of TLS in promoting effective antitumor immunity, further understanding of its organization and induction may provide new opportunities to improve the current immunotherapy strategies. Despite recent interest on the clinical value of tumor infiltrating lymphocyte (TIL), little was known on the clinical significance on their spatial organization as tertiary lymphoid structures (TLS). Although TLS showed similar relationships with clinicopathologic features and biomarkers as TIL, the prognostic value of TLS, particularly in HER2 positive cancers, was independent of TIL. Moreover, tumor infiltration could be present in TLS which appears to be related to tumor invasion in HER2 negative cancers. Overall, the results demonstrated the additional value for TLS in HER2 cancer subtypes. Further investigations and its standardized evaluation will enhance its use as standard practice. © AlphaMed Press 2017.
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tassel-less1 encodes a boron channel protein required for inflorescence development in maize.
Leonard, April; Holloway, Beth; Guo, Mei; Rupe, Mary; Yu, GongXin; Beatty, Mary; Zastrow-Hayes, Gina; Meeley, Robert; Llaca, Victor; Butler, Karlene; Stefani, Tony; Jaqueth, Jennifer; Li, Bailin
2014-06-01
tassel-less1 (tls1) is a classical maize (Zea mays) inflorescence mutant. Homozygous mutant plants have no tassels or very small tassels, and ear development is also impaired. Using a positional cloning approach, ZmNIP3;1 (a NOD26-like intrinsic protein) was identified as the candidate gene for tls1. The ZmNIP3;1 gene is completely deleted in the tls1 mutant genome. Two Mutator-insertional TUSC alleles of ZmNIP3;1 exhibited tls1-like phenotypes, and allelism tests confirmed that the tls1 gene encodes ZmNIP3;1. Transgenic plants with an RNA interference (RNAi) construct to down-regulate ZmNIP3;1 also showed tls1-like phenotypes, further demonstrating that TLS1 is ZmNIP3;1. Sequence analysis suggests that ZmNIP3;1 is a boron channel protein. Foliar application of boron could rescue the tls1 phenotypes and restore the normal tassel and ear development. Gene expression analysis indicated that in comparison with that of the wild type or tls1 plants treated with boron, the transition from the vegetative to reproductive phase or the development of the floral meristem is impaired in the shoot apical meristem of the tls1 mutant plants. It is concluded that the tls1 mutant phenotypes are caused by impaired boron transport, and boron is essential for inflorescence development in maize. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.
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A Yeast Model of FUS/TLS-Dependent Cytotoxicity
Ju, Shulin; Tardiff, Daniel F.; Han, Haesun; Divya, Kanneganti; Zhong, Quan; Maquat, Lynne E.; Bosco, Daryl A.; Hayward, Lawrence J.; Brown, Robert H.; Lindquist, Susan; Ringe, Dagmar; Petsko, Gregory A.
2011-01-01
FUS/TLS is a nucleic acid binding protein that, when mutated, can cause a subset of familial amyotrophic lateral sclerosis (fALS). Although FUS/TLS is normally located predominantly in the nucleus, the pathogenic mutant forms of FUS/TLS traffic to, and form inclusions in, the cytoplasm of affected spinal motor neurons or glia. Here we report a yeast model of human FUS/TLS expression that recapitulates multiple salient features of the pathology of the disease-causing mutant proteins, including nuclear to cytoplasmic translocation, inclusion formation, and cytotoxicity. Protein domain analysis indicates that the carboxyl-terminus of FUS/TLS, where most of the ALS-associated mutations are clustered, is required but not sufficient for the toxicity of the protein. A genome-wide genetic screen using a yeast over-expression library identified five yeast DNA/RNA binding proteins, encoded by the yeast genes ECM32, NAM8, SBP1, SKO1, and VHR1, that rescue the toxicity of human FUS/TLS without changing its expression level, cytoplasmic translocation, or inclusion formation. Furthermore, hUPF1, a human homologue of ECM32, also rescues the toxicity of FUS/TLS in this model, validating the yeast model and implicating a possible insufficiency in RNA processing or the RNA quality control machinery in the mechanism of FUS/TLS mediated toxicity. Examination of the effect of FUS/TLS expression on the decay of selected mRNAs in yeast indicates that the nonsense-mediated decay pathway is probably not the major determinant of either toxicity or suppression. PMID:21541368
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TLS from fundamentals to practice
Urzhumtsev, Alexandre; Afonine, Pavel V.; Adams, Paul D.
2014-01-01
The Translation-Libration-Screw-rotation (TLS) model of rigid-body harmonic displacements introduced in crystallography by Schomaker & Trueblood (1968) is now a routine tool in macromolecular studies and is a feature of most modern crystallographic structure refinement packages. In this review we consider a number of simple examples that illustrate important features of the TLS model. Based on these examples simplified formulae are given for several special cases that may occur in structure modeling and refinement. The derivation of general TLS formulae from basic principles is also provided. This manuscript describes the principles of TLS modeling, as well as some select algorithmic details for practical application. An extensive list of applications references as examples of TLS in macromolecular crystallography refinement is provided. PMID:25249713
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Time-lapse systems for embryo incubation and assessment in assisted reproduction.
Armstrong, Sarah; Arroll, Nicola; Cree, Lynsey M; Jordan, Vanessa; Farquhar, Cindy
2015-02-27
Embryo incubation and assessment is a vital step in assisted reproductive technology (ART). Traditionally, embryo assessment has been achieved by removing embryos from a conventional incubator daily for assessment of quality by an embryologist, under a light microscope. Over recent years time-lapse systems (TLSs) have been developed which can take digital images of embryos at frequent time intervals. This allows embryologists, with or without the assistance of computer algorithms, to assess the quality of the embryos without physically removing them from the incubator.The potential advantages of a TLS include the ability to maintain a stable culture environment, therefore limiting the exposure of embryos to changes in gas composition, temperature and movement. Additionally a TLS has the potential advantage of improving embryo selection for ART treatment by utilising additional information gained through monitoring embryo development. To determine the effect of a TLS compared to conventional embryo incubation and assessment on clinical outcomes in couples undergoing ART. A comprehensive search of all the major electronic databases, including grey literature, was undertaken in co-ordination with the Trials Search Co-ordinator of the Cochrane Menstrual Disorders and Subfertility Group in July 2014 and repeated in November 2014 to confirm that the review is up to date. Two authors (SA and NA) independently scanned the titles and abstracts of the articles retrieved by the search. Full texts of potentially eligible randomised controlled trials (RCTs) were obtained and examined independently by the authors for their suitability according to the review inclusion criteria. In the case of doubt between the two authors, a third author (LC) was consulted to gain consensus. The selection process is documented with a Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) flow chart. Data were obtained and extracted by two authors. Disagreement was resolved by consensus. Trial authors were contacted by e-mail to obtain further study information and data. All extracted data were dichotomous outcomes and odds ratios (OR) were calculated on an intention-to-treat basis. Where enough data were available, meta-analysis was undertaken. Three studies involving 994 women were found for inclusion. Data from all three studies were used to address comparison one, TLS with or without cell-tracking algorithms versus conventional incubation. No studies were found to address comparison two, TLS utilising cell-tracking algorithms versus TLS not utilising cell-tracking algorithms.There was only one study which reported live birth (n = 76). The results demonstrated no conclusive evidence of a difference in live birth rate per couple randomly assigned to the TLS and conventional incubation arms of the study (OR 1.1, 95% CI 0.45 to 2.73, 1 RCT, n = 76, moderate quality evidence).All three studies reported miscarriage (n = 994). There was no conclusive evidence of a difference in miscarriage rates per couple randomly assigned to the TLS and conventional incubation arms (OR 0.70, 95% CI 0.47 to 1.04, 3 RCTs, n = 994, I(2) = 0%, low quality evidence).Only one study reported stillbirth rates (n = 76). There were equal numbers of stillbirths in both the TLS and conventional incubation arms of the study. Therefore, there was no evidence of a difference in the stillbirth rate per couple randomly assigned to TLS and conventional incubation (OR 1.0, 95% CI 0.13 to 7.49, 1 RCT, moderate quality evidence).All three studies reported clinical pregnancy rates (n = 994). There was no conclusive evidence of a difference in clinical pregnancy rate per couple randomly assigned to the TLS and conventional incubation arms (OR 1.23, 95% CI 0.96 to 1.59, 3 RCTs, n = 994, I(2) = 0%, low quality evidence). None of the included studies reported cumulative clinical pregnancy rates. There is insufficient evidence of differences in live birth, miscarriage, stillbirth or clinical pregnancy to choose between TLS and conventional incubation. Further data explicitly comparing the incubation environment, the algorithm for embryo selection, or both, are required before recommendations for a change of routine practice can be justified.
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A defect in homologous recombination leads to increased translesion synthesis in E. coli
Naiman, Karel; Pagès, Vincent; Fuchs, Robert P.
2016-01-01
DNA damage tolerance pathways allow cells to duplicate their genomes despite the presence of replication blocking lesions. Cells possess two major tolerance strategies, namely translesion synthesis (TLS) and homology directed gap repair (HDGR). TLS pathways involve specialized DNA polymerases that are able to synthesize past DNA lesions with an intrinsic risk of causing point mutations. In contrast, HDGR pathways are essentially error-free as they rely on the recovery of missing information from the sister chromatid by RecA-mediated homologous recombination. We have investigated the genetic control of pathway choice between TLS and HDGR in vivo in Escherichia coli. In a strain with wild type RecA activity, the extent of TLS across replication blocking lesions is generally low while HDGR is used extensively. Interestingly, recA alleles that are partially impaired in D-loop formation confer a decrease in HDGR and a concomitant increase in TLS. Thus, partial defect of RecA's capacity to invade the homologous sister chromatid increases the lifetime of the ssDNA.RecA filament, i.e. the ‘SOS signal’. This increase favors TLS by increasing both the TLS polymerase concentration and the lifetime of the TLS substrate, before it becomes sequestered by homologous recombination. In conclusion, the pathway choice between error-prone TLS and error-free HDGR is controlled by the efficiency of homologous recombination. PMID:27257075
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Durbak, Amanda R.; Phillips, Kimberly A.; Pike, Sharon; O’Neill, Malcolm A.; Mares, Jonathan; Gallavotti, Andrea; Malcomber, Simon T.; Gassmann, Walter; McSteen, Paula
2014-01-01
The element boron (B) is an essential plant micronutrient, and B deficiency results in significant crop losses worldwide. The maize (Zea mays) tassel-less1 (tls1) mutant has defects in vegetative and inflorescence development, comparable to the effects of B deficiency. Positional cloning revealed that tls1 encodes a protein in the aquaporin family co-orthologous to known B channel proteins in other species. Transport assays show that the TLS1 protein facilitates the movement of B and water into Xenopus laevis oocytes. B content is reduced in tls1 mutants, and application of B rescues the mutant phenotype, indicating that the TLS1 protein facilitates the movement of B in planta. B is required to cross-link the pectic polysaccharide rhamnogalacturonan II (RG-II) in the cell wall, and the percentage of RG-II dimers is reduced in tls1 inflorescences, indicating that the defects may result from altered cell wall properties. Plants heterozygous for both tls1 and rotten ear (rte), the proposed B efflux transporter, exhibit a dosage-dependent defect in inflorescence development under B-limited conditions, indicating that both TLS1 and RTE function in the same biological processes. Together, our data provide evidence that TLS1 is a B transport facilitator in maize, highlighting the importance of B homeostasis in meristem function. PMID:25035406
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Accuracy assessment of building point clouds automatically generated from iphone images
NASA Astrophysics Data System (ADS)
Sirmacek, B.; Lindenbergh, R.
2014-06-01
Low-cost sensor generated 3D models can be useful for quick 3D urban model updating, yet the quality of the models is questionable. In this article, we evaluate the reliability of an automatic point cloud generation method using multi-view iPhone images or an iPhone video file as an input. We register such automatically generated point cloud on a TLS point cloud of the same object to discuss accuracy, advantages and limitations of the iPhone generated point clouds. For the chosen example showcase, we have classified 1.23% of the iPhone point cloud points as outliers, and calculated the mean of the point to point distances to the TLS point cloud as 0.11 m. Since a TLS point cloud might also include measurement errors and noise, we computed local noise values for the point clouds from both sources. Mean (μ) and standard deviation (σ) of roughness histograms are calculated as (μ1 = 0.44 m., σ1 = 0.071 m.) and (μ2 = 0.025 m., σ2 = 0.037 m.) for the iPhone and TLS point clouds respectively. Our experimental results indicate possible usage of the proposed automatic 3D model generation framework for 3D urban map updating, fusion and detail enhancing, quick and real-time change detection purposes. However, further insights should be obtained first on the circumstances that are needed to guarantee a successful point cloud generation from smartphone images.
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NASA Astrophysics Data System (ADS)
Duarte, João; Gonçalves, Gil; Duarte, Diogo; Figueiredo, Fernando; Mira, Maria
2015-04-01
Photogrammetric Unmanned Aerial Vehicles (UAVs) and Terrestrial Laser Scanners (TLS) are two emerging technologies that allows the production of dense 3D point clouds of the sensed topographic surfaces. Although image-based stereo-photogrammetric point clouds could not, in general, compete on geometric quality over TLS point clouds, fully automated mapping solutions based on ultra-light UAVs (or drones) have recently become commercially available at very reasonable accuracy and cost for engineering and geological applications. The purpose of this paper is to compare the two point clouds generated by these two technologies, in order to automatize the manual process tasks commonly used to detect and represent the attitude of discontinuities (Stereographic projection: Schmidt net - Equal area). To avoid the difficulties of access and guarantee the data survey security conditions, this fundamental step in all geological/geotechnical studies, applied to the extractive industry and engineering works, has to be replaced by a more expeditious and reliable methodology. This methodology will allow, in a more actuated clear way, give answers to the needs of evaluation of rock masses, by mapping the structures present, which will reduce considerably the associated risks (investment, structures dimensioning, security, etc.). A case study of a dolerite outcrop locate in the center of Portugal (the dolerite outcrop is situated in the volcanic complex of Serra de Todo-o-Mundo, Casais Gaiola, intruded in Jurassic sandstones) will be used to assess this methodology. The results obtained show that the 3D point cloud produced by the Photogrammetric UAV platform has the appropriate geometric quality for extracting the parameters that define the discontinuities of the dolerite outcrops. Although, they are comparable to the manual extracted parameters, their quality is inferior to parameters extracted from the TLS point cloud.
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Tumor Lysis Syndrome in Chronic Lymphocytic Leukemia with Novel Targeted Agents.
Cheson, Bruce D; Heitner Enschede, Sari; Cerri, Elisa; Desai, Monali; Potluri, Jalaja; Lamanna, Nicole; Tam, Constantine
2017-11-01
Tumor lysis syndrome (TLS) is an uncommon but potentially life-threatening complication associated with the treatment of some cancers. If left untreated, TLS may result in acute renal failure, cardiac dysrhythmia, neurologic complications, seizures, or death. Tumor lysis syndrome is most commonly observed in patients with hematologic malignancies with a high proliferation rate undergoing treatment with very effective therapies. In chronic lymphocytic leukemia (CLL), historically, TLS has been observed less often, owing to a low proliferation rate and slow response to chemotherapy. New targeted therapies have recently been approved in the treatment of CLL, including the oral kinase inhibitors, idelalisib and ibrutinib, and the B-cell lymphoma-2 protein inhibitor, venetoclax. Several others are also under development, and combination strategies of these agents are being explored. This review examines the diagnosis, prevention, and management of TLS and summarizes the TLS experience in CLL clinical trials with newer targeted agents. Overall, the risk of TLS is small, but the consequences may be fatal; therefore, patients should be monitored carefully. Therapies capable of eliciting rapid response and combination regimens are increasingly being evaluated for treatment of CLL, which may pose a higher risk of TLS. For optimal management, patients at risk for TLS require prophylaxis and close monitoring with appropriate tests and appropriate management to correct laboratory abnormalities, which allows for safe and effective disease control. Tumor lysis syndrome (TLS) is a potentially fatal condition observed with hematologic malignancies, caused by release of cellular components in the bloodstream from rapidly dying tumor cells. The frequency and severity of TLS is partly dependent upon the biology of the disease and type of therapy administered. Novel targeted agents highly effective at inducing rapid cell death in chronic lymphocytic leukemia (CLL) may pose a risk for TLS in patients with tumors characterized by rapid growth, high tumor burden, and/or high sensitivity to treatment. In this review, prevention strategies and management of patients with CLL who develop TLS are described. © 2017 The Authors The Oncologist published by Wiley Periodicals, Inc. on behalf of AlphaMed Press.
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Brubaker, Chad; Jana, Suman; Ray, Baishakhi; Khurshid, Sarfraz; Shmatikov, Vitaly
2014-01-01
Modern network security rests on the Secure Sockets Layer (SSL) and Transport Layer Security (TLS) protocols. Distributed systems, mobile and desktop applications, embedded devices, and all of secure Web rely on SSL/TLS for protection against network attacks. This protection critically depends on whether SSL/TLS clients correctly validate X.509 certificates presented by servers during the SSL/TLS handshake protocol. We design, implement, and apply the first methodology for large-scale testing of certificate validation logic in SSL/TLS implementations. Our first ingredient is "frankencerts," synthetic certificates that are randomly mutated from parts of real certificates and thus include unusual combinations of extensions and constraints. Our second ingredient is differential testing: if one SSL/TLS implementation accepts a certificate while another rejects the same certificate, we use the discrepancy as an oracle for finding flaws in individual implementations. Differential testing with frankencerts uncovered 208 discrepancies between popular SSL/TLS implementations such as OpenSSL, NSS, CyaSSL, GnuTLS, PolarSSL, MatrixSSL, etc. Many of them are caused by serious security vulnerabilities. For example, any server with a valid X.509 version 1 certificate can act as a rogue certificate authority and issue fake certificates for any domain, enabling man-in-the-middle attacks against MatrixSSL and GnuTLS. Several implementations also accept certificate authorities created by unauthorized issuers, as well as certificates not intended for server authentication. We also found serious vulnerabilities in how users are warned about certificate validation errors. When presented with an expired, self-signed certificate, NSS, Safari, and Chrome (on Linux) report that the certificate has expired-a low-risk, often ignored error-but not that the connection is insecure against a man-in-the-middle attack. These results demonstrate that automated adversarial testing with frankencerts is a powerful methodology for discovering security flaws in SSL/TLS implementations.
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Brubaker, Chad; Jana, Suman; Ray, Baishakhi; Khurshid, Sarfraz; Shmatikov, Vitaly
2014-01-01
Modern network security rests on the Secure Sockets Layer (SSL) and Transport Layer Security (TLS) protocols. Distributed systems, mobile and desktop applications, embedded devices, and all of secure Web rely on SSL/TLS for protection against network attacks. This protection critically depends on whether SSL/TLS clients correctly validate X.509 certificates presented by servers during the SSL/TLS handshake protocol. We design, implement, and apply the first methodology for large-scale testing of certificate validation logic in SSL/TLS implementations. Our first ingredient is “frankencerts,” synthetic certificates that are randomly mutated from parts of real certificates and thus include unusual combinations of extensions and constraints. Our second ingredient is differential testing: if one SSL/TLS implementation accepts a certificate while another rejects the same certificate, we use the discrepancy as an oracle for finding flaws in individual implementations. Differential testing with frankencerts uncovered 208 discrepancies between popular SSL/TLS implementations such as OpenSSL, NSS, CyaSSL, GnuTLS, PolarSSL, MatrixSSL, etc. Many of them are caused by serious security vulnerabilities. For example, any server with a valid X.509 version 1 certificate can act as a rogue certificate authority and issue fake certificates for any domain, enabling man-in-the-middle attacks against MatrixSSL and GnuTLS. Several implementations also accept certificate authorities created by unauthorized issuers, as well as certificates not intended for server authentication. We also found serious vulnerabilities in how users are warned about certificate validation errors. When presented with an expired, self-signed certificate, NSS, Safari, and Chrome (on Linux) report that the certificate has expired—a low-risk, often ignored error—but not that the connection is insecure against a man-in-the-middle attack. These results demonstrate that automated adversarial testing with frankencerts is a powerful methodology for discovering security flaws in SSL/TLS implementations. PMID:25404868
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High current gain transistor laser
Liang, Song; Qiao, Lijun; Zhu, Hongliang; Wang, Wei
2016-01-01
A transistor laser (TL), having the structure of a transistor with multi-quantum wells near its base region, bridges the functionality gap between lasers and transistors. However, light emission is produced at the expense of current gain for all the TLs reported up to now, leading to a very low current gain. We propose a novel design of TLs, which have an n-doped InP layer inserted in the emitter ridge. Numerical studies show that a current flow aperture for only holes can be formed in the center of the emitter ridge. As a result, the common emitter current gain can be as large as 143.3, which is over 15 times larger than that of a TL without the aperture. Besides, the effects of nonradiative recombination defects can be reduced greatly because the flow of holes is confined in the center region of the emitter ridge. PMID:27282466
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The p21 and PCNA partnership: a new twist for an old plot.
Prives, Carol; Gottifredi, Vanesa
2008-12-15
The contribution of error-prone DNA polymerases to the DNA damage response has been a subject of great interest in the last decade. Error-prone polymerases are required for translesion DNA synthesis (TLS), a process that involves synthesis past a DNA lesion. Under certain circumstances, TLS polymerases can achieve bypass with good efficiency and fidelity. However, they can also in some cases be mutagenic, and so negative regulators of TLS polymerases would have the important function of inhibiting their recruitment to undamaged DNA templates. Recent work from Livneh's and our groups have provided evidence regarding the role of the cyclin kinase inhibitor p21 as a negative regulator of TLS. Interestingly, both the cyclin dependent kinase (CDK) and proliferating cell nuclear antigen (PCNA) binding domains of p21 are involved in different aspects of the modulation of TLS, affecting both the interaction between PCNA and the TLS-specific pol eta as well as PCNA ubiquitination status. In line with this, p21 was shown to reduce the efficiency but increase the accuracy of TLS. Hence, in absence of DNA damage p21 may work to impede accidental loading of pol eta to undamaged DNA and avoid consequential mutagenesis. After UV irradiation, when TLS plays a decisive role, p21 is progressively degraded. This might allow gradual release of replication fork blockage by TLS polymerases. For these reasons, in higher eukaryotes p21 might represent a key regulator of the equilibrium between mutagenesis and cell survival.
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Forest structure analysis combining laser scanning with digital airborne photogrammetry
NASA Astrophysics Data System (ADS)
Lissak, Candide; Onda, Yuichi; Kato, Hiroaki
2017-04-01
The interest of Light Detection and Ranging (LiDAR) for vegetation structure analysis has been demonstrated in several research context. Indeed, airborne or ground Lidar surveys can provide detailed three-dimensional data of the forest structure from understorey forest to the canopy. To characterize at different timescale the vegetation components in dense cedar forests we can combine several sources point clouds from Lidar survey and photogrammetry data. For our study, Terrestrial Laser Scanning (TLS-Leica ScanStation C10 processed with Cyclone software) have been lead in three forest areas (≈ 200m2 each zone) mainly composed of japanese cedar (Japonica cryptomeria), in the region of Fukushima (Japan). The study areas are characterized by various vegetation densities. For the 3 areas, Terrestrial laser scanning has been performed from several location points and several heights. Various floors shootings (ground, 4m, 6m and 18m high) were able with the use of a several meters high tower implanted to study the canopy evolution following the Fukushima Daiishi nuclear power plant accident. The combination of all scanners provides a very dense 3D point cloud of ground and canopy structure (average 300 000 000 points). For the Tochigi forest area, a first test of a low-cost Unmanned Aerial Vehicle (UAV) photogrammetry has been lead and calibrated by ground GPS measurements to determine the coordinates of points. TLS combined to UAV photogrammetry make it possible to obtain information on vertical and horizontal structure of the Tochigi forest. This combination of technologies will allow the forest structure mapping, morphometry analysis and the assessment of biomass volume evolution from multi-temporal point clouds. In our research, we used a low-cost UAV 3 Advanced (200 m2 cover, 1300 pictures...). Data processing were performed using PotoScan Pro software to obtain a very dense point clouds to combine to TLS data set. This low-cost UAV photogrammetry data has been successfully used to derive information on the canopy cover. The purpose of this poster is to present the usability of combined remote sensing methods for forest structure analysis and 3D model reconstitution for a trend analysis of the forest changes.
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Authentication Binding between SSL/TLS and HTTP
NASA Astrophysics Data System (ADS)
Saito, Takamichi; Sekiguchi, Kiyomi; Hatsugai, Ryosuke
While the Secure Socket Layer or Transport Layer Security (SSL/TLS) is assumed to provide secure communications over the Internet, many web applications utilize basic or digest authentication of Hyper Text Transport Protocol (HTTP) over SSL/TLS. Namely, in the scheme, there are two different authentication schemes in a session. Since they are separated by a layer, these are not convenient for a web application. Moreover, the scheme may also cause problems in establishing secure communication. Then we provide a scheme of authentication binding between SSL/TLS and HTTP without modifying SSL/TLS protocols and its implementation, and we show the effectiveness of our proposed scheme.
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A Description for Rock Joint Roughness Based on Terrestrial Laser Scanner and Image Analysis
Ge, Yunfeng; Tang, Huiming; Eldin, M. A. M Ez; Chen, Pengyu; Wang, Liangqing; Wang, Jinge
2015-01-01
Shear behavior of rock mass greatly depends upon the rock joint roughness which is generally characterized by anisotropy, scale effect and interval effect. A new index enabling to capture all the three features, namely brightness area percentage (BAP), is presented to express the roughness based on synthetic illumination of a digital terrain model derived from terrestrial laser scanner (TLS). Since only tiny planes facing opposite to shear direction make contribution to resistance during shear failure, therefore these planes are recognized through the image processing technique by taking advantage of the fact that they appear brighter than other ones under the same light source. Comparison with existing roughness indexes and two case studies were illustrated to test the performance of BAP description. The results reveal that the rock joint roughness estimated by the presented description has a good match with existing roughness methods and displays a wider applicability. PMID:26585247
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Characterization of human translesion DNA synthesis across a UV-induced DNA lesion
Hedglin, Mark; Pandey, Binod; Benkovic, Stephen J
2016-01-01
Translesion DNA synthesis (TLS) during S-phase uses specialized TLS DNA polymerases to replicate a DNA lesion, allowing stringent DNA synthesis to resume beyond the offending damage. Human TLS involves the conjugation of ubiquitin to PCNA clamps encircling damaged DNA and the role of this post-translational modification is under scrutiny. A widely-accepted model purports that ubiquitinated PCNA recruits TLS polymerases such as pol η to sites of DNA damage where they may also displace a blocked replicative polymerase. We provide extensive quantitative evidence that the binding of pol η to PCNA and the ensuing TLS are both independent of PCNA ubiquitination. Rather, the unique properties of pols η and δ are attuned to promote an efficient and passive exchange of polymerases during TLS on the lagging strand. DOI: http://dx.doi.org/10.7554/eLife.19788.001 PMID:27770570
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Rock face stability analysis and potential rockfall source detection in Yosemite Valley
NASA Astrophysics Data System (ADS)
Matasci, B.; Stock, G. M.; Jaboyedoff, M.; Oppikofer, T.; Pedrazzini, A.; Carrea, D.
2012-04-01
Rockfall hazard in Yosemite Valley is especially high owing to the great cliff heights (~1 km), the fracturing of the steep granitic cliffs, and the widespread occurrence of surface parallel sheeting or exfoliation joints. Between 1857 and 2011, 890 documented rockfalls and other slope movements caused 15 fatalities and at least 82 injuries. The first part of this study focused on realizing a structural study for Yosemite Valley at both regional (valley-wide) and local (rockfall source area) scales. The dominant joint sets were completely characterized by their orientation, persistence, spacing, roughness and opening. Spacing and trace length for each joint set were accurately measured on terrestrial laser scanning (TLS) point clouds with the software PolyWorks (InnovMetric). Based on this fundamental information the second part of the study aimed to detect the most important failure mechanisms leading to rockfalls. With the software Matterocking and the 1m cell size DEM, we calculated the number of possible failure mechanisms (wedge sliding, planar sliding, toppling) per cell, for several cliffs of the valley. Orientation, spacing and persistence measurements directly issued from field and TLS data were inserted in the Matterocking calculations. TLS point clouds are much more accurate than the 1m DEM and show the overhangs of the cliffs. Accordingly, with the software Coltop 3D we developed a methodology similar to the one used with Matterocking to identify on the TLS point clouds the areas of a cliff with the highest number of failure mechanisms. Exfoliation joints are included in this stability analysis in the same way as the other joint sets, with the only difference that their orientation is parallel to the local cliff orientation and thus variable. This means that, in two separate areas of a cliff, the exfoliation joint set is taken into account with different dip direction and dip, but its effect on the stability assessment is the same. Areas with a high density of possible failure mechanisms are shown to be more susceptible to rockfalls, demonstrating a link between high fracture density and rockfall susceptibility. This approach enables locating the most probable future rockfall sources and provides key elements needed to evaluate the potential volume and run-out distance of rockfall blocks. This information is used to improve rockfall hazard assessment in Yosemite Valley and elsewhere.
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Ji, Jia; Mould, Diane R.; Blum, Kristie A.; Ruppert, Amy S.; Poi, Ming; Zhao, Yuan; Johnson, Amy J.; Byrd, John C.; Grever, Michael R.; Phelps, Mitch A.
2013-01-01
Purpose Flavopiridol, the first clinically evaluated cyclin dependent kinase inhibitor, demonstrates activity in patients with refractory chronic lymphocytic leukemia, but prevalent and unpredictable tumor lysis syndrome (TLS) presents a major barrier to its broad clinical use. The purpose of this study was to investigate the relationships between pretreatment risk factors, drug pharmacokinetics, and TLS. Experimental Design A population pharmacokinetic/pharmacodynamic model linking drug exposure and TLS was developed. Plasma data of flavopiridol and its glucuronide metabolite (flavo-G) were obtained from 111 patients treated in early phase trials with frequent sampling following initial and/or escalated doses. TLS grading was modeled with logistic regression as a pharmacodynamic endpoint. Demographics, baseline disease status, and blood chemistry variables were evaluated as covariates. Results Gender was the most significant pharmacokinetic covariate, with females displaying higher flavo-G exposure than males. Glucuronide metabolite exposure was predictive of TLS occurrence, and bulky lymphadenopathy was identified as a significant covariate on TLS probability. The estimated probability of TLS occurrence in patients with baseline bulky lymphadenopathy < 10 cm or > 10 cm during the first two treatments was 0.111 (SE% 13.0%) and 0.265, (SE% 17.9%) respectively, when flavo-G area under the plasma concentration vs. time curve was at its median value in whole patient group. Conclusions This is the first population pharmacokinetic/pharmacodynamic model of TLS. Further work is needed to explore potential mechanisms and to determine if the associations between TLS, gender and glucuronide metabolites are relevant in CLL patients treated with other cyclin dependent kinase inhibitors. PMID:23300276
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NASA Astrophysics Data System (ADS)
Ding, J.; Wang, G.; Xiong, L.; Zhou, X.; England, E.
2017-12-01
Coastal regions are naturally vulnerable to impact from long-term coastal erosion and episodic coastal hazards caused by extreme weather events. Major geomorphic changes can occur within a few hours during storms. Prediction of storm impact, costal planning and resilience observation after natural events all require accurate and up-to-date topographic maps of coastal morphology. Thus, the ability to conduct rapid and high-resolution-high-accuracy topographic mapping is of critical importance for long-term coastal management and rapid response after natural hazard events. Terrestrial laser scanning (TLS) techniques have been frequently applied to beach and dune erosion studies and post hazard responses. However, TLS surveying is relatively slow and costly for rapid surveying. Furthermore, TLS surveying unavoidably retains gray areas that cannot be reached by laser pulses, particularly in wetland areas where lack of direct access in most cases. Aerial mapping using photogrammetry from images taken by unmanned aerial vehicles (UAV) has become a new technique for rapid topographic mapping. UAV photogrammetry mapping techniques provide the ability to map coastal features quickly, safely, inexpensively, on short notice and with minimal impact. The primary products from photogrammetry are point clouds similar to the LiDAR point clouds. However, a large number of ground control points (ground truth) are essential for obtaining high-accuracy UAV maps. The ground control points are often obtained by GPS survey simultaneously with the TLS survey in the field. The GPS survey could be a slow and arduous process in the field. This study aims to develop methods for acquiring a huge number of ground control points from TLS survey and validating point clouds obtained from photogrammetry with the TLS point clouds. A Rigel VZ-2000 TLS scanner was used for developing laser point clouds and a DJI Phantom 4 Pro UAV was used for acquiring images. The aerial images were processed with the Photogrammetry mapping software Agisoft PhotoScan. A workflow for conducting rapid TLS and UAV survey in the field and integrating point clouds obtained from TLS and UAV surveying will be introduced. Key words: UAV photogrammetry, ground control points, TLS, coastal morphology, topographic mapping
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NASA Astrophysics Data System (ADS)
Muhammad, F. D.; Zulkifli, M. Z.; Harun, S. W.; Ahmad, H.
2013-05-01
In this paper, we propose a fiber Bragg grating (FBG) interrogation system for high resolution sensor application based on radio frequency (RF) generation technique by beating a single longitudinal mode (SLM) fiber ring laser with an external tunable laser source (TLS). The external TLS provides a constant wavelength (CW), functioning as the reference signal for the frequency beating technique. The TLS used has a constant output power and wavelength over time. The sensor signal is provided by the reflected wavelength of a typical fiber Bragg grating (FBG) in the SLM fiber ring laser, which consists of a 1 m long highly doped Erbium doped fiber as the gain medium. The key to ensure the SLM laser oscillation is the role of graphene as saturable absorber which is opposed to the commonly used unpumped erbiumdoped fiber and this consequently contributes to the simple and short cavity design of our proposed system. The signal from the SLM fiber ring laser, which is generated by the FBG in response to external changes, such as temperature, strain, air humidity and air movement, is heterodyned with the CW signal from the TLS at a 6 GHz photodetector using a 3-dB fused coupler to generate the frequency beating. This proposed system is experimentally demonstrated as a temperature sensor and the results shows that the frequency response of the system towards the changes in temperature is about 1.3 GHz/°C, taking into account the resolution bandwidth of 3 MHz of the radio frequency spectrum analyzer (RFSA).
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NASA Astrophysics Data System (ADS)
Gleason, M. J.; Pitlick, J.; Buttenfield, B. P.
2011-12-01
Terrestrial laser scanning (TLS) represents a new and particularly effective remote sensing technique for investigating geomorphologic processes. Unfortunately, TLS data are commonly characterized by extremely large volume, heterogeneous point distribution, and erroneous measurements, raising challenges for applied researchers. To facilitate efficient and accurate use of TLS in geomorphology, and to improve accessibility for TLS processing in commercial software environments, we are developing a filtering method for raw TLS data to: eliminate data redundancy; produce a more uniformly spaced dataset; remove erroneous measurements; and maintain the ability of the TLS dataset to accurately model terrain. Our method conducts local aggregation of raw TLS data using a 3-D search algorithm based on the geometrical expression of expected random errors in the data. This approach accounts for the estimated accuracy and precision limitations of the instruments and procedures used in data collection, thereby allowing for identification and removal of potential erroneous measurements prior to data aggregation. Initial tests of the proposed technique on a sample TLS point cloud required a modest processing time of approximately 100 minutes to reduce dataset volume over 90 percent (from 12,380,074 to 1,145,705 points). Preliminary analysis of the filtered point cloud revealed substantial improvement in homogeneity of point distribution and minimal degradation of derived terrain models. We will test the method on two independent TLS datasets collected in consecutive years along a non-vegetated reach of the North Fork Toutle River in Washington. We will evaluate the tool using various quantitative, qualitative, and statistical methods. The crux of this evaluation will include a bootstrapping analysis to test the ability of the filtered datasets to model the terrain at roughly the same accuracy as the raw datasets.
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Regulation of error-prone translesion synthesis by Spartan/C1orf124
Kim, Myoung Shin; Machida, Yuka; Vashisht, Ajay A.; Wohlschlegel, James A.; Pang, Yuan-Ping; Machida, Yuichi J.
2013-01-01
Translesion synthesis (TLS) employs low fidelity polymerases to replicate past damaged DNA in a potentially error-prone process. Regulatory mechanisms that prevent TLS-associated mutagenesis are unknown; however, our recent studies suggest that the PCNA-binding protein Spartan plays a role in suppression of damage-induced mutagenesis. Here, we show that Spartan negatively regulates error-prone TLS that is dependent on POLD3, the accessory subunit of the replicative DNA polymerase Pol δ. We demonstrate that the putative zinc metalloprotease domain SprT in Spartan directly interacts with POLD3 and contributes to suppression of damage-induced mutagenesis. Depletion of Spartan induces complex formation of POLD3 with Rev1 and the error-prone TLS polymerase Pol ζ, and elevates mutagenesis that relies on POLD3, Rev1 and Pol ζ. These results suggest that Spartan negatively regulates POLD3 function in Rev1/Pol ζ-dependent TLS, revealing a previously unrecognized regulatory step in error-prone TLS. PMID:23254330
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NASA Astrophysics Data System (ADS)
Lin, Yi; Jiang, Miao
2017-01-01
Tree species information is essential for forest research and management purposes, which in turn require approaches for accurate and precise classification of tree species. One such remote sensing technology, terrestrial laser scanning (TLS), has proved to be capable of characterizing detailed tree structures, such as tree stem geometry. Can TLS further differentiate between broad- and needle-leaves? If the answer is positive, TLS data can be used for classification of taxonomic tree groups by directly examining their differences in leaf morphology. An analysis was proposed to assess TLS-represented broad- and needle-leaf structures, followed by a Bayes classifier to perform the classification. Tests indicated that the proposed method can basically implement the task, with an overall accuracy of 77.78%. This study indicates a way of implementing the classification of the two major broad- and needle-leaf taxonomies measured by TLS in accordance to their literal definitions, and manifests the potential of extending TLS applications in forestry.
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Application of terrestrial laser scanning to the development and updating of the base map
NASA Astrophysics Data System (ADS)
Klapa, Przemysław; Mitka, Bartosz
2017-06-01
The base map provides basic information about land to individuals, companies, developers, design engineers, organizations, and government agencies. Its contents include spatial location data for control network points, buildings, land lots, infrastructure facilities, and topographic features. As the primary map of the country, it must be developed in accordance with specific laws and regulations and be continuously updated. The base map is a data source used for the development and updating of derivative maps and other large scale cartographic materials such as thematic or topographic maps. Thanks to the advancement of science and technology, the quality of land surveys carried out by means of terrestrial laser scanning (TLS) matches that of traditional surveying methods in many respects. This paper discusses the potential application of output data from laser scanners (point clouds) to the development and updating of cartographic materials, taking Poland's base map as an example. A few research sites were chosen to present the method and the process of conducting a TLS land survey: a fragment of a residential area, a street, the surroundings of buildings, and an undeveloped area. The entire map that was drawn as a result of the survey was checked by comparing it to a map obtained from PODGiK (pol. Powiatowy Ośrodek Dokumentacji Geodezyjnej i Kartograficznej - Regional Centre for Geodetic and Cartographic Records) and by conducting a field inspection. An accuracy and quality analysis of the conducted fieldwork and deskwork yielded very good results, which provide solid grounds for predicating that cartographic materials based on a TLS point cloud are a reliable source of information about land. The contents of the map that had been created with the use of the obtained point cloud were very accurately located in space (x, y, z). The conducted accuracy analysis and the inspection of the performed works showed that high quality is characteristic of TLS surveys. The accuracy of determining the location of the various map contents has been estimated at 0.02-0.03 m. The map was developed in conformity with the applicable laws and regulations as well as with best practice requirements.
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Secure Channel Establishment in Disadvantaged Networks: TLS Optimization Using Intercepting Proxies
2009-08-18
50 4.1.2 Link Emulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51 4.1.3 Openssl ...59 5 5.3 Acquired Skills . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 60 5.3.1 Openssl ...an openssl library [4], which is designed to work with differing certificate formats. 1.2.3.4 TLS Handshakes A TLS connection begins with a handshake
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Stenz, Ulrich; Hartmann, Jens; Paffenholz, Jens-André; Neumann, Ingo
2017-08-16
Terrestrial laser scanning (TLS) is an efficient solution to collect large-scale data. The efficiency can be increased by combining TLS with additional sensors in a TLS-based multi-sensor-system (MSS). The uncertainty of scanned points is not homogenous and depends on many different influencing factors. These include the sensor properties, referencing, scan geometry (e.g., distance and angle of incidence), environmental conditions (e.g., atmospheric conditions) and the scanned object (e.g., material, color and reflectance, etc.). The paper presents methods, infrastructure and results for the validation of the suitability of TLS and TLS-based MSS. Main aspects are the backward modelling of the uncertainty on the basis of reference data (e.g., point clouds) with superordinate accuracy and the appropriation of a suitable environment/infrastructure (e.g., the calibration process of the targets for the registration of laser scanner and laser tracker data in a common coordinate system with high accuracy) In this context superordinate accuracy means that the accuracy of the acquired reference data is better by a factor of 10 than the data of the validated TLS and TLS-based MSS. These aspects play an important role in engineering geodesy, where the aimed accuracy lies in a range of a few mm or less.
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NASA Astrophysics Data System (ADS)
Hodge, R.; Brasington, J.; Richards, K.
2009-04-01
The ability to collect 3D elevation data at mm-resolution from in-situ natural surfaces, such as fluvial and coastal sediments, rock surfaces, soils and dunes, is beneficial for a range of geomorphological and geological research. From these data the properties of the surface can be measured, and Digital Terrain Models (DTM) can be constructed. Terrestrial Laser Scanning (TLS) can collect quickly such 3D data with mm-precision and mm-spacing. This paper presents a methodology for the collection and processing of such TLS data, and considers how the errors in this TLS data can be quantified. TLS has been used to collect elevation data from fluvial gravel surfaces. Data were collected from areas of approximately 1 m2, with median grain sizes ranging from 18 to 63 mm. Errors are inherent in such data as a result of the precision of the TLS, and the interaction of factors including laser footprint, surface topography, surface reflectivity and scanning geometry. The methodology for the collection and processing of TLS data from complex surfaces like these fluvial sediments aims to minimise the occurrence of, and remove, such errors. The methodology incorporates taking scans from multiple scanner locations, averaging repeat scans, and applying a series of filters to remove erroneous points. Analysis of 2.5D DTMs interpolated from the processed data has identified geomorphic properties of the gravel surfaces, including the distribution of surface elevations, preferential grain orientation and grain imbrication. However, validation of the data and interpolated DTMs is limited by the availability of techniques capable of collecting independent elevation data of comparable quality. Instead, two alternative approaches to data validation are presented. The first consists of careful internal validation to optimise filter parameter values during data processing combined with a series of laboratory experiments. In the experiments, TLS data were collected from a sphere and planes with different reflectivities to measure the accuracy and precision of TLS data of these geometrically simple objects. Whilst this first approach allows the maximum precision of TLS data from complex surfaces to be estimated, it cannot quantify the distribution of errors within the TLS data and across the interpolated DTMs. The second approach enables this by simulating the collection of TLS data from complex surfaces of a known geometry. This simulated scanning has been verified through systematic comparison with laboratory TLS data. Two types of surface geometry have been investigated: simulated regular arrays of uniform spheres used to analyse the effect of sphere size; and irregular beds of spheres with the same grain size distribution as the fluvial gravels, which provide a comparable complex geometry to the field sediment surfaces. A series of simulated scans of these surfaces has enabled the magnitude and spatial distribution of errors in the interpolated DTMs to be quantified, as well as demonstrating the utility of the different processing stages in removing errors from TLS data. As well as demonstrating the application of simulated scanning as a technique to quantify errors, these results can be used to estimate errors in comparable TLS data.
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Virtual Reconstruction of Lost Architectures: from the Tls Survey to AR Visualization
NASA Astrophysics Data System (ADS)
Quattrini, R.; Pierdicca, R.; Frontoni, E.; Barcaglioni, R.
2016-06-01
The exploitation of high quality 3D models for dissemination of archaeological heritage is currently an investigated topic, although Mobile Augmented Reality platforms for historical architecture are not available, allowing to develop low-cost pipelines for effective contents. The paper presents a virtual anastylosis, starting from historical sources and from 3D model based on TLS survey. Several efforts and outputs in augmented or immersive environments, exploiting this reconstruction, are discussed. The work demonstrates the feasibility of a 3D reconstruction approach for complex architectural shapes starting from point clouds and its AR/VR exploitation, allowing the superimposition with archaeological evidences. Major contributions consist in the presentation and the discussion of a pipeline starting from the virtual model, to its simplification showing several outcomes, comparing also the supported data qualities and advantages/disadvantages due to MAR and VR limitations.
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DICOM image secure communications with Internet protocols IPv6 and IPv4.
Zhang, Jianguo; Yu, Fenghai; Sun, Jianyong; Yang, Yuanyuan; Liang, Chenwen
2007-01-01
Image-data transmission from one site to another through public network is usually characterized in term of privacy, authenticity, and integrity. In this paper, we first describe a general scenario about how image is delivered from one site to another through a wide-area network (WAN) with security features of data privacy, integrity, and authenticity. Second, we give the common implementation method of the digital imaging and communication in medicine (DICOM) image communication software library with IPv6/IPv4 for high-speed broadband Internet by using open-source software. Third, we discuss two major security-transmission methods, the IP security (IPSec) and the secure-socket layer (SSL) or transport-layer security (TLS), being used currently in medical-image-data communication with privacy support. Fourth, we describe a test schema of multiple-modality DICOM-image communications through TCP/IPv4 and TCP/IPv6 with different security methods, different security algorithms, and operating systems, and evaluate the test results. We found that there are tradeoff factors between choosing the IPsec and the SSL/TLS-based security implementation of IPv6/IPv4 protocols. If the WAN networks only use IPv6 such as in high-speed broadband Internet, the choice is IPsec-based security. If the networks are IPv4 or the combination of IPv6 and IPv4, it is better to use SSL/TLS security. The Linux platform has more security algorithms implemented than the Windows (XP) platform, and can achieve better performance in most experiments of IPv6 and IPv4-based DICOM-image communications. In teleradiology or enterprise-PACS applications, the Linux operating system may be the better choice as peer security gateways for both the IPsec and the SSL/TLS-based secure DICOM communications cross public networks.
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Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis.
Livneh, Zvi; Ziv, Omer; Shachar, Sigal
2010-02-15
The encounter of replication forks with DNA lesions may lead to fork arrest and/or the formation of single-stranded gaps. A major strategy to cope with these replication irregularities is translesion DNA synthesis (TLS), in which specialized error-prone DNA polymerases bypass the blocking lesions. Recent studies suggest that TLS across a particular DNA lesion may involve as many as four different TLS polymerases, acting in two-polymerase reactions in which insertion by a particular polymerase is followed by extension by another polymerase. Insertion determines the accuracy and mutagenic specificity of the TLS reaction, and is carried out by one of several polymerases such as poleta, polkappa or poliota. In contrast, extension is carried out primarily by polzeta. In cells from XPV patients, which are deficient in TLS across cyclobutane pyrimidine dimers (CPD) due to a deficiency in poleta, TLS is carried out by at least two backup reactions each involving two polymerases: One reaction involves polkappa and polzeta, and the other poliota and polzeta. These mechanisms may also assist poleta in normal cells under an excessive amount of UV lesions.
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Forest Resource Measurements by Combination of Terrestrial Laser Scanning and Drone Use
NASA Astrophysics Data System (ADS)
Cheung, K.; Katoh, M.; Horisawa, M.
2017-10-01
Using terrestrial laser scanning (TLS), forest attributes such as diameter at breast height (DBH) and tree location can be measured accurately. However, due to low penetration of laser pulses to tree tops, tree height measurements are typically underestimated. In this study, data acquired by TLS and drones were combined; DBH and tree locations were determined by TLS, and tree heights were measured by drone use. The average tree height error and root mean square error (RMSE) of tree height were 0.8 and 1.2 m, respectively, for the combined method, and -0.4 and 1.7 m using TLS alone. The tree height difference was compared using airborne laser scanning (ALS). Furthermore, a method to acquire 100 % tree detection rate based on TLS data is suggested in this study.
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Tertiary lymphoid structures in cancer and beyond.
Dieu-Nosjean, Marie-Caroline; Goc, Jérémy; Giraldo, Nicolas A; Sautès-Fridman, Catherine; Fridman, Wolf Herman
2014-11-01
Tertiary lymphoid structures (TLS) are ectopic lymphoid formations found in inflamed, infected, or tumoral tissues. They exhibit all the characteristics of structures in the lymph nodes (LN) associated with the generation of an adaptive immune response, including a T cell zone with mature dendritic cells (DC), a germinal center with follicular dendritic cells (FDC) and proliferating B cells, and high endothelial venules (HEV). In this review, we discuss evidence for the roles of TLS in chronic infection, autoimmunity, and cancer, and address the question of whether TLS present beneficial or deleterious effects in these contexts. We examine the relationship between TLS in tumors and patient prognosis, and discuss the potential role of TLS in building and/or maintaining local immune responses and how this understanding may guide therapeutic interventions. Copyright © 2014 Elsevier Ltd. All rights reserved.
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NASA Astrophysics Data System (ADS)
Thoeni, K.; Giacomini, A.; Murtagh, R.; Kniest, E.
2014-06-01
This work presents a comparative study between multi-view 3D reconstruction using various digital cameras and a terrestrial laser scanner (TLS). Five different digital cameras were used in order to estimate the limits related to the camera type and to establish the minimum camera requirements to obtain comparable results to the ones of the TLS. The cameras used for this study range from commercial grade to professional grade and included a GoPro Hero 1080 (5 Mp), iPhone 4S (8 Mp), Panasonic Lumix LX5 (9.5 Mp), Panasonic Lumix ZS20 (14.1 Mp) and Canon EOS 7D (18 Mp). The TLS used for this work was a FARO Focus 3D laser scanner with a range accuracy of ±2 mm. The study area is a small rock wall of about 6 m height and 20 m length. The wall is partly smooth with some evident geological features, such as non-persistent joints and sharp edges. Eight control points were placed on the wall and their coordinates were measured by using a total station. These coordinates were then used to georeference all models. A similar number of images was acquired from a distance of between approximately 5 to 10 m, depending on field of view of each camera. The commercial software package PhotoScan was used to process the images, georeference and scale the models, and to generate the dense point clouds. Finally, the open-source package CloudCompare was used to assess the accuracy of the multi-view results. Each point cloud obtained from a specific camera was compared to the point cloud obtained with the TLS. The latter is taken as ground truth. The result is a coloured point cloud for each camera showing the deviation in relation to the TLS data. The main goal of this study is to quantify the quality of the multi-view 3D reconstruction results obtained with various cameras as objectively as possible and to evaluate its applicability to geotechnical problems.
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Stenz, Ulrich; Neumann, Ingo
2017-01-01
Terrestrial laser scanning (TLS) is an efficient solution to collect large-scale data. The efficiency can be increased by combining TLS with additional sensors in a TLS-based multi-sensor-system (MSS). The uncertainty of scanned points is not homogenous and depends on many different influencing factors. These include the sensor properties, referencing, scan geometry (e.g., distance and angle of incidence), environmental conditions (e.g., atmospheric conditions) and the scanned object (e.g., material, color and reflectance, etc.). The paper presents methods, infrastructure and results for the validation of the suitability of TLS and TLS-based MSS. Main aspects are the backward modelling of the uncertainty on the basis of reference data (e.g., point clouds) with superordinate accuracy and the appropriation of a suitable environment/infrastructure (e.g., the calibration process of the targets for the registration of laser scanner and laser tracker data in a common coordinate system with high accuracy) In this context superordinate accuracy means that the accuracy of the acquired reference data is better by a factor of 10 than the data of the validated TLS and TLS-based MSS. These aspects play an important role in engineering geodesy, where the aimed accuracy lies in a range of a few mm or less. PMID:28812998
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Impacts of the School Social Unit on Teacher Authority during Work Redesign.
ERIC Educational Resources Information Center
Hart, Ann Weaver
1990-01-01
Work redesign to facilitate teacher empowerment was studied in a year-long comparative case study in two junior-high schools implementing a career-ladder program. Journals of 6 teacher leaders (TLs), 23 teachers, and 3 teacher-specialists; TLs' and novice teachers' midyear surveys; and 61 classroom observations by TLs and principals were analyzed.…
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Seismic monitoring of small alpine rockfalls - validity, precision and limitations
NASA Astrophysics Data System (ADS)
Dietze, Michael; Mohadjer, Solmaz; Turowski, Jens M.; Ehlers, Todd A.; Hovius, Niels
2017-10-01
Rockfall in deglaciated mountain valleys is perhaps the most important post-glacial geomorphic process for determining the rates and patterns of valley wall erosion. Furthermore, rockfall poses a significant hazard to inhabitants and motivates monitoring efforts in populated areas. Traditional rockfall detection methods, such as aerial photography and terrestrial laser scanning (TLS) data evaluation, provide constraints on the location and released volume of rock but have limitations due to significant time lags or integration times between surveys, and deliver limited information on rockfall triggering mechanisms and the dynamics of individual events. Environmental seismology, the study of seismic signals emitted by processes at the Earth's surface, provides a complementary solution to these shortcomings. However, this approach is predominantly limited by the strength of the signals emitted by a source and their transformation and attenuation towards receivers. To test the ability of seismic methods to identify and locate small rockfalls, and to characterise their dynamics, we surveyed a 2.16 km2 large, near-vertical cliff section of the Lauterbrunnen Valley in the Swiss Alps with a TLS device and six broadband seismometers. During 37 days in autumn 2014, 10 TLS-detected rockfalls with volumes ranging from 0.053 ± 0.004 to 2.338 ± 0.085 m3 were independently detected and located by the seismic approach, with a deviation of 81-29+59 m (about 7 % of the average inter-station distance of the seismometer network). Further potential rockfalls were detected outside the TLS-surveyed cliff area. The onset of individual events can be determined within a few milliseconds, and their dynamics can be resolved into distinct phases, such as detachment, free fall, intermittent impact, fragmentation, arrival at the talus slope and subsequent slope activity. The small rockfall volumes in this area require significant supervision during data processing: 2175 initially picked potential events reduced to 511 potential events after applying automatic rejection criteria. The 511 events needed to be inspected manually to reveal 19 short earthquakes and 37 potential rockfalls, including the 10 TLS-detected events. Rockfall volume does not show a relationship with released seismic energy or peak amplitude at this spatial scale due to the dominance of other, process-inherent factors, such as fall height, degree of fragmentation, and subsequent talus slope activity. The combination of TLS and environmental seismology provides, despite the significant amount of manual data processing, a detailed validation of seismic detection of small volume rockfalls, and revealed unprecedented temporal, spatial and geometric details about rockfalls in steep mountainous terrain.
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Li, Jingcheng; Waynert, Joseph A.; Whisner, Bruce G.
2015-01-01
A medium frequency (MF) communication system operating in an underground coal mine couples its signals to a long conductor, which acts as an MF transmission line (TL) in a tunnel to permit communications among transceivers along the line. The TL is generally the longest signal path for the system, and its propagation characteristics will have a major impact on the performance of the MF communication system. In this study, the propagation characteristics of three types of MF TLs in two layouts—on the roof and on the floor of a coal mine tunnel—were obtained in an effort to understand the propagation characteristics of different TLs in different locations. The study confirmed a low MF signal loss on all of these TLs. The study also found that the TLs in different layouts had substantially different propagation characteristics. The propagation characteristics of these different TLs in different layouts are presented in the paper. PMID:26203349
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Yang, Hao; Xu, Xiangyang; Neumann, Ingo
2014-11-19
Terrestrial laser scanning technology (TLS) is a new technique for quickly getting three-dimensional information. In this paper we research the health assessment of concrete structures with a Finite Element Method (FEM) model based on TLS. The goal focuses on the benefits of 3D TLS in the generation and calibration of FEM models, in order to build a convenient, efficient and intelligent model which can be widely used for the detection and assessment of bridges, buildings, subways and other objects. After comparing the finite element simulation with surface-based measurement data from TLS, the FEM model is determined to be acceptable with an error of less than 5%. The benefit of TLS lies mainly in the possibility of a surface-based validation of results predicted by the FEM model.
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Hot Spots on the Web for Teacher Librarians: A Selection of Recommended Web Sites for TLs To Visit.
ERIC Educational Resources Information Center
1996
Six papers review and recommend sites on the Web as resources for teacher librarians include: "Just Do It: A Guide to Getting Out There and Doing It Yourself" (Catherine Ryan); "A Selection of Recommended Web Sites for TLs To Visit" (Karen Bonanno); "A Selection of Recommended Web Sites for TLs To Visit" (Sandra…
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Incidence of chemotherapy-related tumour lysis syndrome at Kenyatta National Hospital, Nairobi.
Busakhala, W; Joshi, M D; Abinya, N O; Amayo, A; Abwao, H O
2007-03-01
To estimate the magnitude of laboratory defined Tumour Lysis Syndrome (TLS) at Kenyatta National Hospital (KNH), identify its pattern of presentation, resolution, and determine the biochemical outcome of affected patients. Prospective patient-treatment cohort study. Kenyatta National Referral and Teaching Hospital, between November 2004 and April 2005. One hundred and forty two patients receiving first course chemotherapy. Laboratory defined Tumour Lysis Syndrome (TLS). One hundred and eleven patients completed the study protocol. Forty two patients (37.8%) developed TLS. The incidence in haematological malignancies was 75.5% while in non-haematological malignancies was 3.6%. Hyperphosphataemia and hyperkalaemia were the most consistent diagnostic parameters while hyperuricaemia occurred in only one patient. No patient developed hypocalcaemia. Ninety five percent of patients developed TLS within the first three days of receiving chemotherapy while 55% resolved in the first week. Two TLS case mortalities occurred. The incidence of TLS in this cohort study was 38%, and was highest among haematological malignancies. No cases occurred in breast cancer patients. Majority of the cases were diagnosed on the basis of increase in serum phosphate and potassium; uric acid did not rise predominantly due to prophylactic uricosuric therapy. A majority (95%) developed within three days of commencing chemotherapy.
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TLS for generating multi-LOD of 3D building model
NASA Astrophysics Data System (ADS)
Akmalia, R.; Setan, H.; Majid, Z.; Suwardhi, D.; Chong, A.
2014-02-01
The popularity of Terrestrial Laser Scanners (TLS) to capture three dimensional (3D) objects has been used widely for various applications. Development in 3D models has also led people to visualize the environment in 3D. Visualization of objects in a city environment in 3D can be useful for many applications. However, different applications require different kind of 3D models. Since a building is an important object, CityGML has defined a standard for 3D building models at four different levels of detail (LOD). In this research, the advantages of TLS for capturing buildings and the modelling process of the point cloud can be explored. TLS will be used to capture all the building details to generate multi-LOD. This task, in previous works, involves usually the integration of several sensors. However, in this research, point cloud from TLS will be processed to generate the LOD3 model. LOD2 and LOD1 will then be generalized from the resulting LOD3 model. Result from this research is a guiding process to generate the multi-LOD of 3D building starting from LOD3 using TLS. Lastly, the visualization for multi-LOD model will also be shown.
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In vivo evidence for translesion synthesis by the replicative DNA polymerase δ
Hirota, Kouji; Tsuda, Masataka; Mohiuddin; Tsurimoto, Toshiki; Cohen, Isadora S.; Livneh, Zvi; Kobayashi, Kaori; Narita, Takeo; Nishihara, Kana; Murai, Junko; Iwai, Shigenori; Guilbaud, Guillaume; Sale, Julian E.; Takeda, Shunichi
2016-01-01
The intolerance of DNA polymerase δ (Polδ) to incorrect base pairing contributes to its extremely high accuracy during replication, but is believed to inhibit translesion synthesis (TLS). However, chicken DT40 cells lacking the POLD3 subunit of Polδ are deficient in TLS. Previous genetic and biochemical analysis showed that POLD3 may promote lesion bypass by Polδ itself independently of the translesion polymerase Polζ of which POLD3 is also a subunit. To test this hypothesis, we have inactivated Polδ proofreading in pold3 cells. This significantly restored TLS in pold3 mutants, enhancing dA incorporation opposite abasic sites. Purified proofreading-deficient human Polδ holoenzyme performs TLS of abasic sites in vitro much more efficiently than the wild type enzyme, with over 90% of TLS events resulting in dA incorporation. Furthermore, proofreading deficiency enhances the capability of Polδ to continue DNA synthesis over UV lesions both in vivo and in vitro. These data support Polδ contributing to TLS in vivo and suggest that the mutagenesis resulting from loss of Polδ proofreading activity may in part be explained by enhanced lesion bypass. PMID:27185888
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Weighing trees with lasers: advances, challenges and opportunities
Boni Vicari, M.; Burt, A.; Calders, K.; Lewis, S. L.; Raumonen, P.; Wilkes, P.
2018-01-01
Terrestrial laser scanning (TLS) is providing exciting new ways to quantify tree and forest structure, particularly above-ground biomass (AGB). We show how TLS can address some of the key uncertainties and limitations of current approaches to estimating AGB based on empirical allometric scaling equations (ASEs) that underpin all large-scale estimates of AGB. TLS provides extremely detailed non-destructive measurements of tree form independent of tree size and shape. We show examples of three-dimensional (3D) TLS measurements from various tropical and temperate forests and describe how the resulting TLS point clouds can be used to produce quantitative 3D models of branch and trunk size, shape and distribution. These models can drastically improve estimates of AGB, provide new, improved large-scale ASEs, and deliver insights into a range of fundamental tree properties related to structure. Large quantities of detailed measurements of individual 3D tree structure also have the potential to open new and exciting avenues of research in areas where difficulties of measurement have until now prevented statistical approaches to detecting and understanding underlying patterns of scaling, form and function. We discuss these opportunities and some of the challenges that remain to be overcome to enable wider adoption of TLS methods. PMID:29503726
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Next-Generation Terrestrial Laser Scanning to Measure Forest Canopy Structure
NASA Astrophysics Data System (ADS)
Danson, M.
2015-12-01
Terrestrial laser scanners (TLS) are now capable of semi-automatic reconstruction of the structure of complete trees or forest stands and have the potential to provide detailed information on tree architecture and foliage biophysical properties. The trends for the next generation of TLS are towards higher resolution, faster scanning and full-waveform data recording, with mobile, multispectral laser devices. The convergence of these technological advances in the next generation of TLS will allow the production of information for forest and woodland mapping and monitoring that is far more detailed, more accurate, and more comprehensive than any available today. This paper describes recent scientific advances in the application of TLS for characterising forest and woodland areas, drawing on the authors' development of the Salford Advanced Laser Canopy Analyser (SALCA), the activities of the Terrestrial Laser Scanner International Interest Group (TLSIIG), and recent advances in laser scanner technology around the world. The key findings illustrated in the paper are that (i) a complete understanding of system measurement characteristics is required for quantitative analysis of TLS data, (ii) full-waveform data recording is required for extraction of forest biophysical variables and, (iii) multi-wavelength systems provide additional spectral information that is essential for classifying different vegetation components. The paper uses a range of recent experimental TLS measurements to support these findings, and sets out a vision for new research to develop an information-rich future-forest information system, populated by mobile autonomous multispectral TLS devices.
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Jansen, Jacob G.; Temviriyanukul, Piya; Wit, Niek; Delbos, Frédéric; Reynaud, Claude-Agnès; Jacobs, Heinz; de Wind, Niels
2014-01-01
Short-wave ultraviolet light induces both mildly helix-distorting cyclobutane pyrimidine dimers (CPDs) and severely distorting (6–4) pyrimidine pyrimidone photoproducts ((6–4)PPs). The only DNA polymerase (Pol) that is known to replicate efficiently across CPDs is Polη, a member of the Y family of translesion synthesis (TLS) DNA polymerases. Phenotypes of Polη deficiency are transient, suggesting redundancy with other DNA damage tolerance pathways. Here we performed a comprehensive analysis of the temporal requirements of Y-family Pols ι and κ as backups for Polη in (i) bypassing genomic CPD and (6–4)PP lesions in vivo, (ii) suppressing DNA damage signaling, (iii) maintaining cell cycle progression and (iv) promoting cell survival, by using mouse embryonic fibroblast lines with single and combined disruptions in these Pols. The contribution of Polι is restricted to TLS at a subset of the photolesions. Polκ plays a dominant role in rescuing stalled replication forks in Polη-deficient mouse embryonic fibroblasts, both at CPDs and (6–4)PPs. This dampens DNA damage signaling and cell cycle arrest, and results in increased survival. The role of relatively error-prone Pols ι and κ as backups for Polη contributes to the understanding of the mutator phenotype of xeroderma pigmentosum variant, a syndrome caused by Polη defects. PMID:25170086
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Spina, M; Nagy, Z; Ribera, J M; Federico, M; Aurer, I; Jordan, K; Borsaru, G; Pristupa, A S; Bosi, A; Grosicki, S; Glushko, N L; Ristic, D; Jakucs, J; Montesinos, P; Mayer, J; Rego, E M; Baldini, S; Scartoni, S; Capriati, A; Maggi, C A; Simonelli, C
2015-10-01
Serum uric acid (sUA) control is of key relevance in tumor lysis syndrome (TLS) prevention as it correlates with both TLS and renal event risk. We sought to determine whether febuxostat fixed dose achieves a better sUA control than allopurinol while preserving renal function in TLS prevention. Patients with hematologic malignancies at intermediate to high TLS risk grade were randomized to receive febuxostat or allopurinol, starting 2 days before induction chemotherapy, for 7-9 days. Study treatment was blinded, whereas daily dose (low/standard/high containing allopurinol 200/300/600 mg, respectively, or fixed febuxostat 120 mg) depended on the investigator's choice. The co-primary end points, sUA area under curve (AUC sUA1-8) and serum creatinine change, were assessed from baseline to day 8 and analyzed through analysis of covariance with two-sided overall significance level of 5%. Secondary end points included treatment responder rate, laboratory and clinical TLS incidence and safety. A total of 346 patients (82.1% intermediate TLS risk; 82.7% assigned to standard dose) were randomized. Mean AUC sUA1-8 was 514.0 ± 225.71 versus 708.0 ± 234.42 mgxh/dl (P < 0.0001) in favor of febuxostat. Mean serum creatinine change was -0.83 ± 26.98% and -4.92 ± 16.70% for febuxostat and allopurinol, respectively (P = 0.0903). No differences among secondary efficacy end points were detected. Drug-related adverse events occurred in 6.4% of patients in both arms. In the largest adult trial carried out in TLS prevention, febuxostat achieved a significant superior sUA control with one fixed dose in comparison to allopurinol with comparable renal function preservation and safety profile. NCT01724528. © The Author 2015. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: journals.permissions@oup.com.
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2014-07-01
voluminous threat environment. Today we regularly construct seamless encrypted communications between machines through SSL or other TLS . These do not...return to the web application and the user, As a prerequisite to end-to-end communication an SSL , or other suitable TLS is set up between each of the...an TLS connection is established between the requestor and the service provider, within which a WS-Security package will be sent to the service
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Diamant, Noam; Hendel, Ayal; Vered, Ilan; Carell, Thomas; Reißner, Thomas; de Wind, Niels; Geacinov, Nicholas; Livneh, Zvi
2012-01-01
Translesion DNA synthesis (TLS) employs low-fidelity DNA polymerases to bypass replication-blocking lesions, and being associated with chromosomal replication was presumed to occur in the S phase of the cell cycle. Using immunostaining with anti-replication protein A antibodies, we show that in UV-irradiated mammalian cells, chromosomal single-stranded gaps formed in S phase during replication persist into the G2 phase of the cell cycle, where their repair is completed depending on DNA polymerase ζ and Rev1. Analysis of TLS using a high-resolution gapped-plasmid assay system in cell populations enriched by centrifugal elutriation for specific cell cycle phases showed that TLS operates both in S and G2. Moreover, the mutagenic specificity of TLS in G2 was different from S, and in some cases overall mutation frequency was higher. These results suggest that TLS repair of single-stranded gaps caused by DNA lesions can lag behind chromosomal replication, is separable from it, and occurs both in the S and G2 phases of the cell cycle. Such a mechanism may function to maintain efficient replication, which can progress despite the presence of DNA lesions, with TLS lagging behind and patching regions of discontinuity. PMID:21908406
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Scotland, Michelle K; Heltzel, Justin M H; Kath, James E; Choi, Jung-Suk; Berdis, Anthony J; Loparo, Joseph J; Sutton, Mark D
2015-09-01
Translesion DNA synthesis (TLS) by specialized DNA polymerases (Pols) is a conserved mechanism for tolerating replication blocking DNA lesions. The actions of TLS Pols are managed in part by ring-shaped sliding clamp proteins. In addition to catalyzing TLS, altered expression of TLS Pols impedes cellular growth. The goal of this study was to define the relationship between the physiological function of Escherichia coli Pol IV in TLS and its ability to impede growth when overproduced. To this end, 13 novel Pol IV mutants were identified that failed to impede growth. Subsequent analysis of these mutants suggest that overproduced levels of Pol IV inhibit E. coli growth by gaining inappropriate access to the replication fork via a Pol III-Pol IV switch that is mechanistically similar to that used under physiological conditions to coordinate Pol IV-catalyzed TLS with Pol III-catalyzed replication. Detailed analysis of one mutant, Pol IV-T120P, and two previously described Pol IV mutants impaired for interaction with either the rim (Pol IVR) or the cleft (Pol IVC) of the β sliding clamp revealed novel insights into the mechanism of the Pol III-Pol IV switch. Specifically, Pol IV-T120P retained complete catalytic activity in vitro but, like Pol IVR and Pol IVC, failed to support Pol IV TLS function in vivo. Notably, the T120P mutation abrogated a biochemical interaction of Pol IV with Pol III that was required for Pol III-Pol IV switching. Taken together, these results support a model in which Pol III-Pol IV switching involves interaction of Pol IV with Pol III, as well as the β clamp rim and cleft. Moreover, they provide strong support for the view that Pol III-Pol IV switching represents a vitally important mechanism for regulating TLS in vivo by managing access of Pol IV to the DNA.
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Bartholomeus, Harm
2018-01-01
Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11–0.63 m for tree height, and 0.14–3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21–1.21 m for trees, and 1.02–2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed. PMID:29503719
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Roşca, Sabina; Suomalainen, Juha; Bartholomeus, Harm; Herold, Martin
2018-04-06
Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11-0.63 m for tree height, and 0.14-3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21-1.21 m for trees, and 1.02-2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed.
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Papiz, Miroslav Z; Prince, Steve M; Howard, Tina; Cogdell, Richard J; Isaacs, Neil W
2003-03-07
The structure at 100K of integral membrane light-harvesting complex II (LH2) from Rhodopseudomonas acidophila strain 10050 has been refined to 2.0A resolution. The electron density has been significantly improved, compared to the 2.5A resolution map, by high resolution data, cryo-cooling and translation, libration, screw (TLS) refinement. The electron density reveals a second carotenoid molecule, the last five C-terminal residues of the alpha-chain and a carboxy modified alpha-Met1 which forms the ligand of the B800 bacteriochlorophyll. TLS refinement has enabled the characterisation of displacements between molecules in the complex. B850 bacteriochlorophyll molecules are arranged in a ring of 18 pigments composed of nine approximate dimers. These pigments are strongly coupled and at their equilibrium positions the excited state dipole interaction energies, within and between dimers, are approximately 370cm(-1) and 280cm(-1), respectively. This difference in coupling energy is similar in magnitude to changes in interaction energies arising from the pigment displacements described by TLS tensors. The displacements appear to be non-random in nature and appear to be designed to optimise the modulation of pigment energy interactions. This is the first time that LH2 pigment displacements have been quantified experimentally. The calculated energy changes indicate that there may be significant contributions to inter-pigment energy interactions from molecular displacements and these may be of importance to photosynthetic energy transfer.
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On the nullspace of TLS multi-station adjustment
NASA Astrophysics Data System (ADS)
Sterle, Oskar; Kogoj, Dušan; Stopar, Bojan; Kregar, Klemen
2018-07-01
In the article we present an analytic aspect of TLS multi-station least-squares adjustment with the main focus on the datum problem. The datum problem is, compared to previously published researches, theoretically analyzed and solved, where the solution is based on nullspace derivation of the mathematical model. The importance of datum problem solution is seen in a complete description of TLS multi-station adjustment solutions from a set of all minimally constrained least-squares solutions. On a basis of known nullspace, estimable parameters are described and the geometric interpretation of all minimally constrained least squares solutions is presented. At the end a simulated example is used to analyze the results of TLS multi-station minimally constrained and inner constrained least-squares adjustment solutions.
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Balduzzi, Mathilde A.F.; Van der Zande, Dimitry; Stuckens, Jan; Verstraeten, Willem W.; Coppin, Pol
2011-01-01
Light Detection and Ranging (LiDAR) technology can be a valuable tool for describing and quantifying vegetation structure. However, because of their size, extraction of leaf geometries remains complicated. In this study, the intensity data produced by the Terrestrial Laser System (TLS) FARO LS880 is corrected for the distance effect and its relationship with the angle of incidence between the laser beam and the surface of the leaf of a Conference Pear tree (Pyrus Commmunis) is established. The results demonstrate that with only intensity, this relationship has a potential for determining the angle of incidence with the leaves surface with a precision of ±5° for an angle of incidence smaller than 60°, whereas it is more variable for an angle of incidence larger than 60°. It appears that TLS beam footprint, leaf curvatures and leaf wrinkles have an impact on the relationship between intensity and angle of incidence, though, this analysis shows that the intensity of scanned leaves has a potential to eliminate ghost points and to improve their meshing. PMID:22319374
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NASA Astrophysics Data System (ADS)
Bechet, J.; Duc, J.; Loye, A.; Jaboyedoff, M.; Mathys, N.; Malet, J.-P.; Klotz, S.; Le Bouteiller, C.; Rudaz, B.; Travelletti, J.
2015-12-01
The Roubine catchment located in the experimental research station of Draix-Bléone (south French Alps) is situated in Callovo-Oxfordian black marls, a lithology particularly prone to weathering processes. Since 30 years, this small watershed (0.13 ha) has been monitored for analysing hillslope erosion processes at the scale of elementary gullies. Since 2007, a monitoring of surface changes has been performed by comparing of high-resolution digital elevation models (HR-DEMs) produced from Terrestrial Laser Scanner (TLS). The objectives are (1) to detect and (2) to quantify the sediment production and the evolution of the gully morphology in terms of sediment availability/transport capacity vs. rainfall and runoff generation. Time series of TLS observations have been acquired periodically based on the seasonal runoff activity with a very high point cloud density ensuring a resolution of the DEM at the centimetre scale. The topographic changes over a time span of 4 years are analysed. Quantitative analyses of the seasonal erosion activity and of the sediment fluxes contributing to the recharge of tributary gullies and rills are presented. According to the transport capacity generated by runoff, loose regolith soil sources are eroded at different periods of the year. These are forming transient deposits in the main reach when routed downstream, evolving from a transport-limited to a supply-limited regime through the year. The monitoring allows a better understanding of the seasonal pattern of erosion processes for black marls badland-type slopes and illustrates the mode of sediment production and the temporal storage/entrainment in similar slopes. The observed surface changes caused by erosion (ablation/deposition) are quantified for the complete TLS time-series, and sediment budget maps are presented for each season. Comparisons of the TLS sediment budget map with the in situ sediment monitoring (limnigraph and sedigraph) in the stream are discussed. Intense and long duration rainfall events are the triggering factor of the major erosive events.
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Suzuki, Tetsuya; Grúz, Petr; Honma, Masamitsu; Adachi, Noritaka; Nohmi, Takehiko
2016-09-01
Translesion DNA polymerases (TLS pols) play critical roles in defense mechanisms against genotoxic agents. The defects or mutations of TLS pols are predicted to result in hypersensitivity of cells to environmental mutagens. In this study, human cells expressing DNA polymerase ζ (Pol ζ) variants with low fidelity or weak catalytic activity have been established with Nalm-6-MSH+ cells and their sensitivity to mutagenicity and cytotoxicity of benzo[a]pyrene diol epoxide (BPDE) and ultraviolet-C light (UV-C) was examined. The low-fidelity mutants were engineered by knocking-in DNA sequences that direct changes of leucine 2618 to either phenylalanine (L2618F) or methionine (L2618M) of Pol ζ. The weak-catalytic-activity mutants were generated by knocking-in DNA sequences that direct changes of either tyrosine 2779 to phenylalanine (Y2779F) or aspartate 2781 to asparagine (D2781N). In addition, a +1 frameshift mutation, i.e., CCC to CCCC, was introduced in the coding region of the TK1 gene to measure the mutant frequencies. Doubling time and spontaneous TK mutant frequencies of the established cell lines were similar to those of the wild-type cells. The low-fidelity mutants displayed, however, higher sensitivity to the mutagenicity of BPDE and UV-C than the wild-type cells although their cytotoxic sensitivity was not changed. In contrast, the weak-catalytic-activity mutants were more sensitive to the cytotoxicity of BPDE and UV-C than the wild-type cells, and displayed much higher sensitivity to the clastogenicity of BPDE than the wild-type cells in an in vitro micronucleus assay. These results indicate that human Pol ζ is involved in TLS across DNA lesions induced by BPDE and UV-C and also that the TLS plays important roles in induction of mutations, clastogenicity and in cellular survival of the damaged human cells. Similarities and differences in in vivo roles of yeast and human Pol ζ in genome integrity are discussed. Copyright © 2016 Elsevier B.V. All rights reserved.
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Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice
DOE Office of Scientific and Technical Information (OSTI.GOV)
Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong
NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/- Nucks1+/- mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/- mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/- Nucks1+/- mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy inmore » vivo. Trp53+/- Nucks1+/- mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/- Nucks1+/- mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/- Nucks1+/- mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response.« less
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Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice
Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong; ...
2016-08-16
NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/- Nucks1+/- mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/- mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/- Nucks1+/- mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy inmore » vivo. Trp53+/- Nucks1+/- mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/- Nucks1+/- mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/- Nucks1+/- mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response.« less
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Cai, Hui-hua; Liu, Mu-biao; He, Yuan-li
2016-01-01
Abstract To compare the outcomes of transumbilical laparoendoscopic single-site surgery (TU-LESS) versus traditional laparoscopic surgery (TLS) for early stage endometrial cancer (EC). We retrospectively reviewed the medical records of patients with early stage EC who were surgically treated by TU-LESS or TLS between 2011 and 2014 in a tertiary care teaching hospital. We identified 18 EC patients who underwent TU-LESS. Propensity score matching was used to match this group with 18 EC patients who underwent TLS. All patients underwent laparoscopic-assisted vaginal hysterectomy, bilateral salpingo-oophorectomy, and systematic pelvic lymphadenectomy by TU-LESS or TLS without conversion to laparoscopy or laparotomy. Number of pelvic lymph nodes retrieved, operative time and estimated blood loss were comparable between 2 groups. Satisfaction values of the cosmetic outcome evaluated by the patient at day 30 after surgery were significantly higher in TU-LESS group than that in TLS group (9.6 ± 0.8 vs 7.5 ± 0.7, P < 0.001), while there was no statistical difference in postoperative complications within 30 days after surgery, postoperative hospital stay, and hospital cost. For the surgical management of early stage EC, TU-LESS may be a feasible alternative approach to TLS, with comparable short-term surgical outcomes and superior cosmetic outcome. Future large-scale prospective studies are needed to identify these benefits. PMID:27057851
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Hypercalcemia in tumor lysis syndrome.
Shah, Binay Kumar
2014-09-01
Tumor lysis syndrome (TLS) is characterized by hyperkalemia, hyperuricemia, hypocalcemia and hyperphosphatemia. This report describes a case of hypercalcemia in TLS in a patient with diffuse large B cell lymphoma.
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ERIC Educational Resources Information Center
Besson, Ugo; Borghi, Lidia; De Ambrosis, Anna; Mascheretti, Paolo
2010-01-01
We have developed a teaching-learning sequence (TLS) on friction based on a preliminary study involving three dimensions: an analysis of didactic research on the topic, an overview of usual approaches, and a critical analysis of the subject, considered also in its historical development. We found that mostly the usual presentations do not take…
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Ziv, Omer; Geacintov, Nicholas; Nakajima, Satoshi; Yasui, Akira; Livneh, Zvi
2009-01-01
Human cells tolerate UV-induced cyclobutane pyrimidine dimers (CPD) by translesion DNA synthesis (TLS), carried out by DNA polymerase η, the POLH gene product. A deficiency in DNA polymerase η due to germ-line mutations in POLH causes the hereditary disease xeroderma pigmentosum variant (XPV), which is characterized by sunlight sensitivity and extreme predisposition to sunlight-induced skin cancer. XPV cells are UV hypermutable due to the activity of mutagenic TLS across CPD, which explains the cancer predisposition of the patients. However, the identity of the backup polymerase that carries out this mutagenic TLS was unclear. Here, we show that DNA polymerase ζ cooperates with DNA polymerases κ and ι to carry out error-prone TLS across a TT CPD. Moreover, DNA polymerases ζ and κ, but not ι, protect XPV cells against UV cytotoxicity, independently of nucleotide excision repair. This presents an extreme example of benefit-risk balance in the activity of TLS polymerases, which provide protection against UV cytotoxicity at the cost of increased mutagenic load. PMID:19564618
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Ziv, Omer; Geacintov, Nicholas; Nakajima, Satoshi; Yasui, Akira; Livneh, Zvi
2009-07-14
Human cells tolerate UV-induced cyclobutane pyrimidine dimers (CPD) by translesion DNA synthesis (TLS), carried out by DNA polymerase eta, the POLH gene product. A deficiency in DNA polymerase eta due to germ-line mutations in POLH causes the hereditary disease xeroderma pigmentosum variant (XPV), which is characterized by sunlight sensitivity and extreme predisposition to sunlight-induced skin cancer. XPV cells are UV hypermutable due to the activity of mutagenic TLS across CPD, which explains the cancer predisposition of the patients. However, the identity of the backup polymerase that carries out this mutagenic TLS was unclear. Here, we show that DNA polymerase zeta cooperates with DNA polymerases kappa and iota to carry out error-prone TLS across a TT CPD. Moreover, DNA polymerases zeta and kappa, but not iota, protect XPV cells against UV cytotoxicity, independently of nucleotide excision repair. This presents an extreme example of benefit-risk balance in the activity of TLS polymerases, which provide protection against UV cytotoxicity at the cost of increased mutagenic load.
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Characterisation of Intensity Values on Terrestrial Laser Scanning for Recording Enhancement
NASA Astrophysics Data System (ADS)
Balaguer-Puig, M.; Molada-Tebar, A.; Marqués-Mateu, A.; Lerma, J. L.
2017-08-01
Mapping surveys based on terrestrial laser scanning (TLS) are common nowadays for different purposes such as documentation of cultural heritage assets. The chance to extract relevant information from TLS surveys depends not only on the fast acquisition of XYZ coordinates, but also on the meaningful intensity values of the fired objects. TLS behaviour depends on several known factors such as distance, texture, roughness, colour and albedo. This paper seeks to find out the mathematical relationship between the TLS intensity values and the colorimetric data using a colour chart. In order to do so, objective colour specification based on well-known colour spaces is needed. The approach used here started with scanning a colour chart containing a number of colour patches with known chromatic and reflection characteristics. After several transformations, the results allowed us to characterise the intensity behaviour of a time-of-flight laser scanner. The characterisation of the intensity values are tested indoor on the colour chart and outdoor on an archaeological shelter. Promising results are obtained to enhance the behaviour of the intensity values coming from the TLS.
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Oikawa, Kosuke; Ishida, Tsuyoshi; Imamura, Tetsuo; Yoshida, Keiichi; Takanashi, Masakatsu; Hattori, Hiroyuki; Ishikawa, Akio; Fujita, Koji; Yamamoto, Kengo; Matsubayashi, Jun; Kuroda, Masahiko; Mukai, Kiyoshi
2006-03-01
The fusion oncoproteins, TLS-CHOP and EWS-CHOP, are characteristic markers for myxoid and round cell liposarcomas (MLS/RCLS). Especially, the peptide sequence of 26 amino acids corresponding to the normally untranslated CHOP exon 2 and parts of exon 3 (5'-UTR) is a unique structure for these chimeric proteins. In this report, we have generated monoclonal antibodies against the unique peptide sequence of TLS/EWS-CHOP oncoproteins. These antibodies reacted with TLS-CHOP fusion protein, but not reacted with normal TLS and CHOP proteins by Western blot analysis. In addition, one of the antibodies also recognized the chimeric oncoprotein in archival paraffin-embedded tissue samples of MLS/RCLS. The oncoprotein was detectable by the antibody even in the paraffin-embedded tissue samples whose mRNAs were too degraded to be detected by a nested reverse transcription-polymerase chain reaction-based assay. Thus, the molecular assay using the novel antibody is expected to be one of the most sensitive diagnostic assays for MLS/RCLS.
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Low frequency critical current noise and two level system defects in Josephson junctions
NASA Astrophysics Data System (ADS)
Nugroho, Christopher Daniel
The critical current in a Josephson junction is known to exhibit a 1/falpha low frequency noise. Implemented as a superconducting qubit, this low frequency noise can lead to decoherence. While the 1/f noise has been known to arise from an ensemble of two level systems connected to the tunnel barrier, the precise microscopic nature of these TLSs remain a mystery. In this thesis we will present measurements of the 1/f alpha low frequency noise in the critical current and tunneling resistance of Al-AlOx-Al Josephson junctions. Measurements in a wide range of resistively shunted and unshunted junctions confirm the equality of critical current and tunneling resistance noise. That is the critical current fluctuation corresponds to fluctuations of the tunneling resistance. In not too small Al-AlOx-Al junctions we have found that the fractional power spectral density scales linearly with temperature. We confirmed that the 1/falpha power spectrum is the result of a large number of two level systems modulating the tunneling resistance. At small junction areas and low temperatures, the number of thermally active TLSs is insufficient to integrate out a featureless 1/ f spectral shape. By analyzing the spectral variance in small junction areas, we have been able to deduce the TLS defect density, n ≈ 2.53 per micrometer squared per Kelvin spread in the TLS energy per factor e in the TLS lifetimes. This density is consistent with the density of tunneling TLSs found in glassy insulators, as well as the density deduced from coherent TLSs interacting at qubit frequencies. The deduced TLS density combined with the magnitude of the 1/f power spectral density in large area junctions, gives an average TLS effective area, A ˜ 0.3 nanometer squared. In ultra small tunnel junctions, we have studied the time-domain dynamics of isolated TLSs. We have found a TLS whose dynamics is described by the quantum tunneling between the two localized wells, and a one-phonon absorption/emission switching rate. From the quantum limiting rate and the WKB approximation, we estimated that the TLS has a mass and tunneling distance product consistent with an atomic mass tunneling through crystal lattice distances. At higher temperatures TLSs have been found that obey a simple thermal activation dynamics. By analyzing the TLS response to an external electric field, we have deduced that the TLS electric dipole is in the order of, P ˜ 1 electron-Angstrom, consistent with the TLS having the charge of one electron tunneling through a disorder potential of distances, d ˜ 1 Angstrom.
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NASA Astrophysics Data System (ADS)
Christofori, E.; Bierwagen, J.
2013-07-01
Recording Cultural Heritage objects using terrestrial laserscanning becomes more and more popular over the last years. Since terrestrial Laserscanning System (TLS) Manufacturers have strongly increased the amount and speed of data captured with a single scan at each system upgrade and cutting down system costs the use of TLS Systems for recording cultural heritage is an option for recording worth to think about beside traditional methods like Photogrammetric. TLS Systems can be a great tool for capturing complex cultural heritage object within a short amount of time beside the traditional methods but can be a nightmare to handle for further process if not used right while capturing. Furthermore TLS Systems still have to be recognized as survey equipment, even though some of the manufactures promote them as everyday tool. They have to be used in an intelligent way having in mind the clients and the individual cultural objects needs. Thus the efficient way to use TLS Systems for data recording becomes a relevant topic to deal with the huge Amount of data the Systems collect while recording. Already small projects can turn into huge Pointcloud Datasets that End user, like Architects or Archaeologist neither can't deal with as their technical equipment doesn't fit the requirements of the Dataset nor do they have the software tools to use the Data as the current software tools still are high prized. Even the necessary interpretation of the Dataset can be a tough task if the people who have to work on with the Pointcloud aren't educated right in order to understand TLS and the results it creates. The use of TLS Systems has to have in mind the project requirements of the individual Heritage Object, like the required accuracy, standards for Levels of Details (e.g. "Empfehlungen für die Baudokumentation, Günther Eckstein, Germany"), the required kind of Deliverables (Visualization, 2D Drawings, True Deformation Drawings, 3D Models, BIM or 4D - Animations) as well as the Projects budget, restrictions and special conditions of the object. And if it's used in the right way TLS will fulfil all request and furthermore create additional recording, deliverable and financial benefit. Christofori und Partner is working with TLS Systems on cultural heritage Objects since 2005 trying to optimize the use of these systems (even in combining different systems like TLS, photogrammetric or new techniques) as well as creating useable deliverables for the Clients (Owner, Conservator, Designers and the Public) they can work on with.
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NASA Astrophysics Data System (ADS)
Goodwin, Nicholas R.; Armston, John D.; Muir, Jasmine; Stiller, Issac
2017-04-01
Airborne laser scanning (ALS) and terrestrial laser scanning (TLS) technologies capture spatially detailed estimates of surface topography and when collected multi-temporally can be used to assess geomorphic change. The sensitivity and repeatability of ALS measurements to characterise geomorphic change in topographically complex environments such as gullies; however, remains an area lacking quantitative research. In this study, we captured coincident ALS and TLS datasets to assess their ability and synergies to detect geomorphic change for a gully located in Aratula, southeast Queensland, Australia. We initially used the higher spatial density and ranging accuracy of TLS to provide an assessment of the Digital Elevation Models (DEM) derived from ALS within a gully environment. Results indicated mean residual errors of 0.13 and 0.09 m along with standard deviation (SD) of residual errors of 0.20 and 0.16 m using pixel sizes of 0.5 and 1.0 m, respectively. The positive mean residual errors confirm that TLS data consistently detected deeper sections of the gully than ALS. We also compared the repeatability of ALS and TLS for characterising gully morphology. This indicated that the sensitivity to detect change using ALS is substantially lower than TLS, as expected, and that the ALS survey characteristics influence the ability to detect change. Notably, we found that using one ALS transect (mean density of 5 points / m2) as opposed to three transects increased the SD of residual error by approximately 30%. The supplied classification of ALS ground points was also demonstrated to misclassify gully features as non-ground, with minimum elevation filtering found to provide a more accurate DEM of the gully. The number and placement of terrestrial laser scans were also found to influence the derived DEMs. Furthermore, we applied change detection using two ALS data captures over a four year period and four TLS field surveys over an eight month period. This demonstrated that ALS can detect large scale erosional changes with head cutting of gully branches migrating approximately 10 m upslope. In comparison, TLS captured smaller scale intra-annual erosional patterns largely undetectable by the ALS dataset with a large rainfall event coinciding with the highest volumetric change (net change > 46 m3). Overall, these findings reaffirm the importance of quantifying DEM errors and demonstrate that ALS is unlikely to detect subtle geomorphic changes (< 0.45 m) potentially missing significant sediment change. TLS was able to detect more subtle intra-annual changes but was limited in its spatial coverage. This suggests TLS and ALS surveys are complementary technologies and when used together can provide a more detailed understanding of gully processes at different temporal and spatial scales, provided the inherent errors are taken into account.
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How Alterations in the Cdt1 Expression Lead to Gene Amplification in Breast Cancer
2011-07-01
absence of extrinsic DNA damage. We measured the TLS activity by measuring the mutation frequency in a supF gene (in a shuttle vector) subjected to UV...induced DNA damage before its introduction into the cells. Error-prone TLS activity will mutate the supF gene , which is scored by a blue-white colony...Figure 4A). Sequencing of the mutant supF genes , revealed a mutation spectrum consistent with error prone TLS (Supplemental Table 1). Significantly
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Mobile Assisted Security in Wireless Sensor Networks
2015-08-03
server from Google’s DNS, Chromecast and the content server does the 3-way TCP Handshake which is followed by Client Hello and Server Hello TLS messages...utilized TLS v1.2, except NTP servers and google’s DNS server. In the TLS v1.2, after handshake, client and server sends Client Hello and Server Hello ...Messages in order. In Client Hello messages, client offers a list of Cipher Suites that it supports. Each Cipher Suite defines the key exchange algorithm
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Sod, Gary A; Riggs, Laura M; Mitchell, Colin F; Hubert, Jeremy D; Martin, George S
2010-01-01
To compare in vitro monotonic biomechanical properties of an axial 3-hole, 4.5 mm narrow dynamic compression plate (DCP) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws inserted in lag fashion (DCP-TLS) with 3 parallel transarticular 5.5 mm cortical screws inserted in lag fashion (3-TLS) for the equine proximal interphalangeal (PIP) joint arthrodesis. Paired in vitro biomechanical testing of 2 methods of stabilizing cadaveric adult equine forelimb PIP joints. Cadaveric adult equine forelimbs (n=15 pairs). For each forelimb pair, 1 PIP joint was stabilized with an axial 3-hole narrow DCP (4.5 mm) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws inserted in lag fashion and 1 with 3 parallel transarticular 5.5 mm cortical screws inserted in lag fashion. Five matching pairs of constructs were tested in single cycle to failure under axial compression, 5 construct pairs were tested for cyclic fatigue under axial compression, and 5 construct pairs were tested in single cycle to failure under torsional loading. Mean values for each fixation method were compared using a paired t-test within each group with statistical significance set at P<.05. Mean yield load, yield stiffness, and failure load under axial compression and torsion, single cycle to failure, of the DCP-TLS fixation were significantly greater than those of the 3-TLS fixation. Mean cycles to failure in axial compression of the DCP-TLS fixation was significantly greater than that of the 3-TLS fixation. The DCP-TLS was superior to the 3-TLS in resisting the static overload forces and in resisting cyclic fatigue. The results of this in vitro study may provide information to aid in the selection of a treatment modality for arthrodesis of the equine PIP joint.
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NASA Astrophysics Data System (ADS)
Rasztovits, S.; Dorninger, P.
2013-07-01
Terrestrial Laser Scanning (TLS) is an established method to reconstruct the geometrical surface of given objects. Current systems allow for fast and efficient determination of 3D models with high accuracy and richness in detail. Alternatively, 3D reconstruction services are using images to reconstruct the surface of an object. While the instrumental expenses for laser scanning systems are high, upcoming free software services as well as open source software packages enable the generation of 3D models using digital consumer cameras. In addition, processing TLS data still requires an experienced user while recent web-services operate completely automatically. An indisputable advantage of image based 3D modeling is its implicit capability for model texturing. However, the achievable accuracy and resolution of the 3D models is lower than those of laser scanning data. Within this contribution, we investigate the results of automated web-services for image based 3D model generation with respect to a TLS reference model. For this, a copper sculpture was acquired using a laser scanner and using image series of different digital cameras. Two different webservices, namely Arc3D and AutoDesk 123D Catch were used to process the image data. The geometric accuracy was compared for the entire model and for some highly structured details. The results are presented and interpreted based on difference models. Finally, an economical comparison of the generation of the models is given considering the interactive and processing time costs.
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Kennedy, LeAnne D; Koontz, Susannah; Rao, Kamakshi
2011-01-01
Tumor lysis syndrome (TLS) is defined as a group of metabolic derangements that result from the massive and abrupt release of cellular components into the bloodstream after rapid lysis of tumor cells. Breakdown of released materials leads to a number of electrolyte abnormalities, including elevated uric acid concentrations in the blood (hyperuricemia), which carries potentially serious consequences. The diagnosis, prevention, and management of TLS is complicated by variability in definitions, differences in risk factors based on patient- and tumor-specific characteristics, and practitioner preferences in terms of pharmaceutical management strategies. The best prevention and management option for a particular patient depends on the patient’s baseline risk for TLS development, the severity of symptoms in the event of TLS development, practical management considerations, and financial implications of treatment. PMID:22287858
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Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse.
Barends, Sharief; Bink, Hugo H J; van den Worm, Sjoerd H E; Pleij, Cornelis W A; Kraal, Barend
2003-01-10
Turnip yellow mosaic virus (TYMV) has a genomic plus-strand RNA with a 5' cap followed by overlapping and different reading frames for the movement protein and polyprotein, while the distal coat protein cistron is translated from a subgenomic RNA. The 3'-untranslated region harbors a tRNA-like structure (TLS) to which a valine moiety can be added and it is indispensable for virus viability. Here, we report about a surprising interaction between TYMV-RNA-programmed ribosomes and 3'-valylated TLS that yields polyprotein with the valine N terminally incorporated by a translation mechanism resistant to regular initiation inhibitors. Disruption of the TLS exclusively abolishes polyprotein synthesis, which can be restored by adding excess TLS in trans. Our observations imply a novel eukaryotic mechanism for internal initiation of mRNA translation.
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Management of pediatric tumor lysis syndrome.
Tazi, Illias; Nafl, Hatim; Elhoudzi, Jamila; Mahmal, Lahoucine; Harif, Mhamed
2011-09-01
Tumor lysis syndrome (TLS) is a serious complication of malignancies and can result in renal failure or death. In tumors with a high proliferative rate with a relatively large mass and a high sensitivity to cytotoxic agents, the initiation of therapy often results in the rapid release of intracellular anions, cations and the metabolic products of proteins and nucleic acids into the bloodstream. The increased concentrations of uric acid, phosphates, potassium and urea can overwhelm the body's homeostatic mechanisms to process and excrete these materials and result in the clinical spectrum associated with TLS. Typical clinical sequelae include gastrointestinal disturbances, neuromuscular effects, cardiovascular complications, acute renal failure and death. Tumor lysis syndrome can also compromise the efficacy or administration of curative therapies. Available evidence suggests that the incidence of clinical TLS is approximately 3-7% for acute leukemias and 4-11% for lymphomas. Pediatric cancers are the leading cause of death by disease in children. The most common pediatric cancers include the leukemias, lymphomas, central nervous system tumors and neuroblastoma. Thus, TLS is a major concern to practitioners caring for pediatric oncology patients. Given the complexity of TLS prevention and treatment, a multidisciplinary approach involving the collaboration of medical oncologists/ hematologists and nephrologists has the greatest potential of ensuring optimal patient outcomes. Rehydration is fundamental in the management of TLS in addition to the current standard therapy for hyperuricemia which include rasburicase and allopurinol. The early recognition and treatment of metabolic abnormalities often prevents the severe and life-threatening complications associated with tumor lysis syndrome.
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Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice
Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong; Huang, Yurong; Grundt, Kirsten; Østvold, Anne-Carine; Jen, Kuang-Yu; Schild, David; Mao, Jian-Hua; Wiese, Claudia
2016-01-01
NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/− Nucks1+/− mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/− mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/− Nucks1+/− mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy in vivo. Trp53+/− Nucks1+/− mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/− Nucks1+/− mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/− Nucks1+/− mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response. PMID:27542204
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NASA Astrophysics Data System (ADS)
Smit, Yvonne; Ruessink, Gerben; Brakenhoff, Laura B.; Donker, Jasper J. A.
2018-04-01
Wind-alone predictions of aeolian sand deposition on the most seaward coastal dune ridge often exceed measured deposition substantially. Surface moisture is a major factor limiting aeolian transport on sandy beaches, but existing measurement techniques cannot adequately characterize the spatial and temporal distribution of surface moisture content. Here, we present a new method for detecting surface moisture at high temporal and spatial resolution using a near-infrared terrestrial laser scanner (TLS), the RIEGL VZ-400. Because this TLS operates at a wavelength (1550 nm) near a water absorption band, TLS reflectance is an accurate parameter to measure surface moisture over its full range. Five days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Gravimetric surface moisture samples were used to calibrate the relation between reflectance and surface moisture. Results reveal a robust negative relation for the full range of possible surface moisture contents (0%-25%), with a correlation-coefficient squared of 0.85 and a root-mean-square error of 2.7%. This relation holds between 20 and 60 m from the TLS. Within this distance the TLS typically produces O (106-107) data points, which we averaged into surface moisture maps with a 1 × 1 m resolution. This grid size largely removes small reflectance disturbances induced by, for example, footprints or tire tracks, while retaining larger scale moisture trends.
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NASA Astrophysics Data System (ADS)
Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron
2016-06-01
Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).
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NASA Astrophysics Data System (ADS)
Kane, Renato R.
Argentina has recently implemented laws to protect glaciers and buried ice in the Andes to improve the sustainability of scarce, long-term water resources. Therefore, all glaciers and buried ice terrains must be located and avoided in any commercial alterations of the landscape. Buried ice in this remote and often dangerous terrain typically is located via the use of remote-sensing techniques. This thesis applies one such technique, Light Detection and Ranging (LiDAR) in the form of Terrestrial Laser Scanning (TLS), to detect rock glacier movement that is indicative of flowing, buried ice not visible in near surface excavations. TLS surveys were completed at two locales, Los Azules and El Altar, in both AD 2013 and AD 2014 on landscapes where buried ice is suspected to have produced the current surface forms. Multiple TLS scans were co-registered with the use of benchmarks, both between scans and between years, which introduced quantifiable positional errors. Digital Elevation Models (DEMs) were derived from the point cloud data by standardizing the spacing of the points in the horizontal direction, creating 0.1 m by 0.1 m cells with elevation as the cell value. The DEMs for each year were subtracted from each other to yield a change in elevation. The surface roughness of the rock glaciers (vertical variability within each cell) was empirically determined and evaluated as a threshold for results. Both sites showed sub-decimeter interannual movements, and the direction of their movement is typical of forms with buried ice. The results of the study were validated using independent GPS data showing annual movement rates. Despite the downslope movement of these rock glaciers, the volume of ice contained within them remains unclear, and further study is required to assess the volume of water contained.
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ERIC Educational Resources Information Center
Olden, Anthony
2005-01-01
The Tanganyika Library Service (TLS) was the national public library service set up in Tanzania, East Africa, in the 1960s. By the end of the decade, it was generally regarded as a model of Western-style public library development in Africa. This is an account of its establishment and early years based on accessible documentary sources in Tanzania…
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Chronology in lesion tolerance gives priority to genetic variability
Naiman, Karel; Philippin, Gaëlle; Fuchs, Robert P.; Pagès, Vincent
2014-01-01
The encounter of a replication fork with a blocking DNA lesion is a common event that cells need to address properly to preserve genome integrity. Cells possess two main strategies to tolerate unrepaired lesions: potentially mutagenic translesion synthesis (TLS) and nonmutagenic damage avoidance (DA). Little is known about the partitioning between these two strategies. Because genes involved in DA mechanisms (i.e., recA) are expressed early and genes involved in TLS (i.e., Pol V) are expressed late during the bacterial SOS response, it has long been thought that TLS was the last recourse to bypass DNA lesions when repair and nonmutagenic DA mechanisms have failed. By using a recently described methodology, we followed the fate of a single replication-blocking lesion introduced in the Escherichia coli genome during acute genotoxic stress. We show that lesion tolerance events (i) only occur when the SOS response is fully induced and (ii) are executed in chronological order, with TLS coming first, followed by DA. Therefore, in response to genotoxic stress, bacterial cells give priority to TLS, a minor pathway able to generate genetic diversity before implementing the major nonmutagenic pathway that ensures survival. PMID:24706928
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Echo spectroscopy of TLS of multiwell adiabatic potential for Pr3+ activator centers in Y2SiO5
NASA Astrophysics Data System (ADS)
Malyukin, Yuri V.; Borysov, R. S.; Zhmurin, P. N.; Lebedenko, A. N.; Grinyov, Boris V.; Znamenskii, N. I.; Manykin, Eduard A.; Orlov, Yu. V.; Petrenko, E. A.; Yukina, T. G.
2002-05-01
Based on the investigation of the temperature dependence of the two-pulse phonon echo amplitude on the 3H4 3Po resonant optical transition of the Pr3+ doped ions in the Y2SiO5 crystal, unusual for crystals, low-temperature mechanisms of Pr3+ spectral line broadening caused by the interaction of doped ions with TLS have been found. The constants characterizing the interaction of the doped Pr3+ ions with phonons and TLS have been determined.
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Using TLS to Improve Models of Volcano Conduit Processes (Invited)
NASA Astrophysics Data System (ADS)
Connor, C.; Connor, L.
2010-12-01
In volcanology, diverse numerical models of conduit flow have been developed to relate the properties of these flows to processes that occur at the surface during eruptions. Conduit models incorporate varying degrees of complexity and account for the transport properties of magmas, steady-state or transient behavior, and conduit geometry (e.g., 1- to 1.5 D, variable width and erodable conduit walls). Improvement of these models is important if we are to work toward deployment of eruption models at active volcanoes, link these models to geophysical observations (seismic, deformation, gravity) and eventually forecast eruption magnitude. One conclusion of a recent comparison of many conduit models is that next generation models need to better account for interaction of the erupting mixture with surrounding wall rocks (accounting for melting, solidification, and erosion) and better account for the effects of conduit shape on flows. We made progress toward accounting for this interaction by using TLS to map basaltic conduits in a deeply eroded volcanic field, the San Rafael volcanic field, Utah. TLS data were collected with UNAVCO support during a field campaign in summer 2010. A region of approximately 1 x 1 km was imaged from 9 TLS stations. TLS data reveal the exact geometries of several exposed conduits, their relationship to sills and dikes, and dramatic change in reflectivity of the Entrada sandstone country rock with alteration. The TLS data are particularly good for (a) quantifying rapid change in conduit shape and area as a function of height, (b) differentiating breccias zones (complex mixing zones along conduit margins) from areas of late stage intrusion, (c) imaging complexity of sill geometry near conduits, illustrating the mechanical and perhaps geochemical interaction between sills and conduits in volcanic fields. Overall, application of TLS in this volcanic field has resulted in substantial improvement in our models of volcanic conduit formation, growth, and interaction with shallow magma storage systems.
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DNA Polymerase ζ is essential for hexavalent chromium-induced mutagenesis
O'Brien, Travis J.; Witcher, Preston; Brooks, Bradford; Patierno, Steven R.
2009-01-01
Translesion synthesis (TLS) is a unique DNA damage tolerance mechanism involved in the replicative bypass of genetic lesions in favor of uninterrupted DNA replication. TLS is critical for the generation of mutations by many different chemical and physical agents, however, there is no information available regarding the role of TLS in carcinogenic metal-induced mutagenesis. Hexavalent chromium (Cr(VI))-containing compounds are highly complex genotoxins possessing both mutagenic and clastogenic activities. The focus of this work was to determine the impact that TLS has on Cr(VI)-induced mutagenesis in S. cerevisiae. Wild-type yeast and strains deficient in TLS polymerases (i.e. Polζ (rev3), Polη (rad30)) were exposed to Cr(VI) and monitored for cell survival and forward mutagenesis at the CAN1 locus. In general, TLS deficiency had little impact on Cr(VI)-induced clonogenic lethality or cell growth. rad30 yeast exhibited higher levels of basal and induced mutagenesis compared to Wt and rev3 yeast. In contrast, rev3 yeast displayed attenuated Cr(VI)-induced mutagenesis. Moreover, deletion of REV3 in rad30 yeast (rad30 rev3) resulted in a significant decrease in basal and Cr(VI) mutagenesis relative to Wt and rad30 single mutants indicating that mutagenesis primarily depended upon Polζ. Interestingly, rev3 yeast were similar to Wt yeast in susceptibility to Cr(VI)-induced frameshift mutations. Mutational analysis of the CAN1 gene revealed that Cr(VI)-induced base substitution mutations accounted for 83.9% and 100.0% of the total mutations in Wt and rev3 yeast, respectively. Insertions and deletions comprised 16.1% of the total mutations in Cr(VI) treated Wt yeast but were not observed rev3 yeast. This work provides novel information regarding the molecular mechanisms of Cr(VI)-induced mutagenesis and is the first report demonstrating a role for TLS in the fixation of mutations induced by a carcinogenic metal. PMID:19428373
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NASA Astrophysics Data System (ADS)
Heathfield, D.; Walker, I. J.; Grilliot, M. J.
2016-12-01
The recent emergence of terrestrial laser scanning (TLS) and unmanned aerial systems (UAS) as mapping platforms in geomorphology research has allowed for expedited acquisition of high spatial and temporal resolution, three-dimensional topographic datasets. TLS provides dense 3D `point cloud' datasets that require careful acquisition strategies and appreciable post-processing to produce accurate digital elevation models (DEMs). UAS provide overlapping nadir and oblique imagery that can be analysed using Structure from Motion (SfM) photogrammetry software to provide accurate, high-resolution orthophoto mosaics and accurate digital surface models (DSMs). Both methods yield centimeter to decimeter scale accuracy, depending on various hardware and field acquisition considerations (e.g., camera resolution, flight height, on-site GNSS control, etc.). Combined, the UAS-SfM workflow provides a comparable and more affordable solution to the more expensive TLS or aerial LiDAR methods. This paper compares and contrasts SfM and TLS survey methodologies and related workflow costs and benefits as used to quantify and examine seasonal beach-dune erosion and recovery processes at a site (Calvert Island) on British Columbia's central coast in western Canada. Seasonal SfM- and TLS-derived DEMs were used to quantify spatial patterns of surface elevation change, geomorphic responses, and related significant sediment volume changes. Cluster maps of positive (depositional) and negative (erosional) change are analysed to detect and interpret the geomorphic and sediment budget responses following an erosive water level event during winter 2016 season (Oct. 2015 - Apr. 2016). Vantage cameras also provided qualitative data on the frequency and magnitude of environmental drivers (e.g., tide, wave, wind forcing) of erosion and deposition events during the observation period. In addition, we evaluate the costs, time expenditures, and accuracy considerations for both SfM and TLS methodologies.
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Pozhidaeva, Alexandra; Pustovalova, Yulia; D'Souza, Sanjay; Bezsonova, Irina; Walker, Graham C.; Korzhnev, Dmitry M.
2013-01-01
Rev1 is a translesion synthesis (TLS) DNA polymerase essential for DNA damage tolerance in eukaryotes. In the process of TLS stalled high-fidelity replicative DNA polymerases are temporarily replaced by specialized TLS enzymes that can bypass sites of DNA damage (lesions), thus allowing replication to continue or postreplicational gaps to be filled. Despite its limited catalytic activity, human Rev1 plays a key role in TLS by serving as a scaffold that provides an access of Y-family TLS polymerases polη, ι, and κ to their cognate DNA lesions and facilitates their subsequent exchange to polζ that extends the distorted DNA primer-template. Rev1 interaction with the other major human TLS polymerases, polη, ι, κ and the regulatory subunit Rev7 of polζ, is mediated by Rev1 C-terminal domain (Rev1-CT). We used NMR spectroscopy to determine the spatial structure of the Rev1-CT domain (residues 1157-1251) and its complex with Rev1 interacting region (RIR) from polη (residues 524-539). The domain forms a four-helix bundle with a well-structured N-terminal β-hairpin docking against helices 1 and 2, creating a binding pocket for the two conserved Phe residues of the RIR motif that upon binding folds into an α-helix. NMR spin-relaxation and NMR relaxation dispersion measurements suggest that free Rev1-CT and Rev1-CT/polη-RIR complex exhibit μs-ms conformational dynamics encompassing the RIR binding site, which might facilitate selection of the molecular configuration optimal for binding. These results offer new insights into the control of TLS in human cells by providing a structural basis for understanding the recognition of the Rev1-CT by Y-family DNA polymerases. PMID:22691049
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Using a terrestrial laser scanner to measure spatiotemporal surface moisture dynamics
NASA Astrophysics Data System (ADS)
Smit, Y.; Donker, J.; Ruessink, G.
2017-12-01
A terrestrial laser scanner (TLS) is an active remote sensing technique that utilizes the round trip time of an emitted laser beam to provide the range between the laser scanner and the backscattering object. It is routinely used for topographic mapping, forest measurements or 3D city models since it derives useful object representations by means of a dense three-dimensional (3D) point cloud. Here, we present a novel application using the returned intensity of the emitted beam to detect surface moisture with the RIEGL VZ-400. Because this TLS operates at a wavelength near a water absorption band (1550 nm), reflectance is an accurate parameter to measure surface moisture over its full range. Five days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Concurrent gravimetric surface moisture samples were collected to calibrate the relation between reflectance and surface moisture. Results reveal the reflectance output is a robust parameter to measure surface moisture from the thin upper layer over its full range from 0% to 25%. The obtained calibration curve of the presented TLS, describing the relationship between reflectance and surface moisture, has a root-mean-square error of 2.7% and a correlation coefficient squared of 0.85. This relation holds to about 60 m from the TLS. Within this distance the TLS typically produces O(10^6-10^7) data points, which we averaged into surface moisture maps with a 1 x 1 m resolution. This grid size largely removes small moisture disturbances induced by, for example, footprints or tire tracks, while retaining larger scale trends. Concluding, TLS (RIEGL-VZ 400) is a highly suited technique to accurately and robustly measure spatiotemporal surface moisture variations on a coastal beach with high spatial ( 1 x 1 m) and temporal ( 15-30min.) resolution.
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Urate oxidase for the prevention and treatment of tumour lysis syndrome in children with cancer.
Cheuk, Daniel K L; Chiang, Alan K S; Chan, Godfrey C F; Ha, Shau Yin
2014-08-14
Tumour lysis syndrome (TLS) is a serious complication of malignancies and can result in renal failure or death. Preliminary reports suggest that urate oxidase is effective in reducing serum uric acid, the build-up of which causes TLS. It is uncertain whether high-quality evidence exists to support its routine use in children with malignancies. To assess the effects and safety of urate oxidase for the prevention and treatment of TLS in children with malignancies. This is an update of the original review. We performed a comprehensive search of the Cochrane Central Register of Controlled Trials (CENTRAL) (in The Cochrane Library issue 1, 2013), MEDLINE (1966 to February 2013), Embase (1980 to February 2013), and CINAHL (1982 to February 2013). In addition, we searched the reference lists of all identified relevant papers. We also explored other internet sources (updated search on 26 February 2013): the NHS' National Research Register, the US National Institutes of Health Ongoing Trials Register, the metaRegister of Controlled Trials, and ProQuest Dissertations & Theses Database. We also screened conference proceedings of the American Society of Clinical Oncology, the European Society for Medical Oncology, and the International Society of Paediatric Oncology meetings from 1993 to 2012. Finally, we contacted experts in the field and the manufacturer of rasburicase, Sanofi-aventis. Randomised controlled trials (RCT) and controlled clinical trials (CCT) of urate oxidase for the prevention or treatment of TLS in children under 18 years with any malignancy. Two review authors independently extracted trial data and assessed individual trial quality. We used risk ratios (RR) for dichotomous data and mean difference (MD) for continuous data. We included seven trials, involving 471 participants in the treatment groups and 603 participants in the control groups. One RCT and five CCTs compared urate oxidase and allopurinol. Three trials tested Uricozyme, and three trials tested rasburicase for the prevention of TLS.The RCT showed no significant difference in mortality (both all-cause mortality and mortality due to TLS), renal failure, and adverse effects between the treatment and the control groups. The frequency of normalisation of uric acid at four hours (Fisher's exact test P < 0.001) and area under curve of uric acid at four days (MD -201.00 mg/dLhr, 95% confidence interval (CI) -258.05 mg/dLhr to -143.95 mg/dLhr; P < 0.00001) were significantly better in the treatment group. The trial did not evaluate the primary outcome (incidence of clinical TLS).Pooled results of three CCTs showed significantly lower mortality due to TLS in the treatment group (RR 0.05, 95% CI 0.00 to 0.89; P = 0.04); all-cause mortality was not significantly different between the groups. Pooled results from five CCTs showed significantly lower incidence of renal failure in the treatment group (RR 0.26, 95% CI 0.08 to 0.89; P = 0.03). Results of CCTs also showed significantly lower uric acid in the treatment group at two days (three CCTs), three days (two CCTs), four days (two CCTs), and seven days (one CCT) after therapy, but not one day (three CCTs), five days (one CCT), and 12 days (one CCT) after therapy. Pooled results from three CCTs showed higher frequency of adverse effects in participants who received urate oxidase (RR 9.10, 95% CI 1.29 to 64.00; P = 0.03). One CCT evaluated the primary outcome; no significant difference was identified.Another included RCT, with 30 participants, compared different doses of rasburicase (0.2 mg/kg versus 0.15 mg/kg), which demonstrated no significant difference in uric acid normalisation and uric acid level at four hours). Common adverse events of urate oxidase included hypersensitivity, haemolysis, and anaemia, but no significant difference between treatment groups was identified. No significant difference in mortality (all-cause mortality and mortality due to TLS) and renal failure was identified. The primary outcome was not evaluated.All included trials were highly susceptible to biases. Although urate oxidase might be effective in reducing serum uric acid, it is unclear whether it reduces clinical tumour lysis syndrome, renal failure, or mortality. Adverse effects might be more common for urate oxidase compared with allopurinol. Clinicians should weigh the potential benefits of reducing uric acid and uncertain benefits of preventing mortality or renal failure from TLS against the potential risk of adverse effects.
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Error-free replicative bypass of (6–4) photoproducts by DNA polymerase ζ in mouse and human cells
Yoon, Jung-Hoon; Prakash, Louise; Prakash, Satya
2010-01-01
The ultraviolet (UV)-induced (6–4) pyrimidine–pyrimidone photoproduct [(6–4) PP] confers a large structural distortion in DNA. Here we examine in human cells the roles of translesion synthesis (TLS) DNA polymerases (Pols) in promoting replication through a (6–4) TT photoproduct carried on a duplex plasmid where bidirectional replication initiates from an origin of replication. We show that TLS contributes to a large fraction of lesion bypass and that it is mostly error-free. We find that, whereas Pol η and Pol ι provide alternate pathways for mutagenic TLS, surprisingly, Pol ζ functions independently of these Pols and in a predominantly error-free manner. We verify and extend these observations in mouse cells and conclude that, in human cells, TLS during replication can be markedly error-free even opposite a highly distorting DNA lesion. PMID:20080950
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Imran, Jonathan B; Madni, Tarik D; Pruitt, Jeffrey H; Cornelius, Canon; Subramanian, Madhu; Clark, Audra T; Mokdad, Ali A; Rizk, Paul; Minei, Joseph P; Cripps, Michael W; Eastman, Alexander L
2018-07-01
The main objective of this study was to compare detection rates of clinically significant thoracolumbar spine (TLS) fracture between computed tomography (CT) imaging of the chest, abdomen, and spine (CT CAP) and CT for the thoracolumbar spine (CT TL). We retrospectively identified patients at our institution with a TLS fracture over a two-year period that had both CT CAP and reformatted CT TL imaging. The sensitivity of CT CAP to identify fracture was calculated for each fracture type. A total of 516 TLS fractures were identified in 125 patients using reformatted CT TL spine imaging. Overall, 69 of 512 fractures (13%) were missed on CT CAP that were identified on CT TL. Of those, there were no clinically significant missed fractures. CT CAP could potentially be used as a screening tool for clinically significant TLS injuries. Copyright © 2017 Elsevier Inc. All rights reserved.
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Rapid, decimeter-resolution fault zone topography mapped with Structure from Motion
NASA Astrophysics Data System (ADS)
Johnson, K. L.; Nissen, E.; Saripalli, S.; Arrowsmith, R.; McGarey, P.; Scharer, K. M.; Williams, P. L.
2013-12-01
Recent advances in the generation of high-resolution topography have revolutionized our ability to detect subtle geomorphic features related to ground-rupturing earthquakes. Currently, the most popular topographic mapping methods are airborne Light Detection And Ranging (LiDAR) and terrestrial laser scanning (TLS). Though powerful, these laser scanning methods have some inherent drawbacks: airborne LiDAR is expensive and can be logistically complicated, while TLS is time consuming even for small field sites and suffers from patchy coverage due to its restricted field-of-view. An alternative mapping technique, called Structure from Motion (SfM), builds upon traditional photogrammetry to reproduce the topography and texture of a scene from photographs taken at varying viewpoints. The improved availability of cheap, unmanned aerial vehicles (UAVs) as camera platforms further expedites data collection by covering large areas efficiently with optimal camera angles. Here, we introduce a simple and affordable UAV- or balloon-based SfM mapping system which can produce dense point clouds and sub-decimeter resolution digital elevation models (DEMs) registered to geospatial coordinates using either the photograph's GPS tags or a few ground control points across the scene. The system is ideally suited for studying ruptures of prehistoric, historic, and modern earthquakes in areas of sparse or low-lying vegetation. We use two sites from southern California faults to illustrate. The first is the ~0.1 km2 Washington Street site, located on the Banning strand of the San Andreas fault near Thousand Palms. A high-resolution DEM with ~700 point/m2 was produced from 230 photos collected on a balloon platform flying at 50 m above the ground. The second site is the Galway Lake Road site, which spans a ~1 km strip of the 1992 Mw 7.3 Landers earthquake on the Emerson Fault. The 100 point/m2 DEM was produced from 267 photos taken with a balloon platform at a height of 60 m above the ground. We compare our SfM results to existing airborne LiDAR or TLS datasets. Each SfM survey required less than 2 hours for setup and data collection, an allotment much lower than that required for TLS data collection, given the size of the sites. Processing time is somewhat slower, but depends on the quality of the DEM desired and is almost fully automated. The SfM point cloud densities we present are comparable to TLS but exceed the density of most airborne LiDAR and the orthophotos (texture maps) from the SfM are valuable complements to the DEMs. The SfM topography illuminates features along the faults that can be used to measure offsets from past ruptures, offering the potential to enhance regional seismic hazard analyses.
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Aryal, Arjun; Brooks, Benjamin A.; Reid, Mark E.; Bawden, Gerald W.; Pawlak, Geno
2012-01-01
Acquiring spatially continuous ground-surface displacement fields from Terrestrial Laser Scanners (TLS) will allow better understanding of the physical processes governing landslide motion at detailed spatial and temporal scales. Problems arise, however, when estimating continuous displacement fields from TLS point-clouds because reflecting points from sequential scans of moving ground are not defined uniquely, thus repeat TLS surveys typically do not track individual reflectors. Here, we implemented the cross-correlation-based Particle Image Velocimetry (PIV) method to derive a surface deformation field using TLS point-cloud data. We estimated associated errors using the shape of the cross-correlation function and tested the method's performance with synthetic displacements applied to a TLS point cloud. We applied the method to the toe of the episodically active Cleveland Corral Landslide in northern California using TLS data acquired in June 2005–January 2007 and January–May 2010. Estimated displacements ranged from decimeters to several meters and they agreed well with independent measurements at better than 9% root mean squared (RMS) error. For each of the time periods, the method provided a smooth, nearly continuous displacement field that coincides with independently mapped boundaries of the slide and permits further kinematic and mechanical inference. For the 2010 data set, for instance, the PIV-derived displacement field identified a diffuse zone of displacement that preceded by over a month the development of a new lateral shear zone. Additionally, the upslope and downslope displacement gradients delineated by the dense PIV field elucidated the non-rigid behavior of the slide.
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NASA Astrophysics Data System (ADS)
Stovall, A. E.; Shugart, H. H., Jr.
2017-12-01
Future NASA and ESA satellite missions plan to better quantify global carbon through detailed observations of forest structure, but ultimately rely on uncertain ground measurement approaches for calibration and validation. A significant amount of the uncertainty in estimating plot-level biomass can be attributed to inadequate and unrepresentative allometric relationships used to convert plot-level tree measurements to estimates of aboveground biomass. These allometric equations are known to have high errors and biases, particularly in carbon rich forests because they were calibrated with small and often biased samples of destructively harvested trees. To overcome this issue, a non-destructive methodology for estimating tree and plot-level biomass has been proposed through the use of Terrestrial Laser Scanning (TLS). We investigated the potential for using TLS as a ground validation approach in LiDAR-based biomass mapping though virtual plot-level tree volume reconstruction and biomass estimation. Plot-level biomass estimates were compared on the Virginia-based Smithsonian Conservation Biology Institute's SIGEO forest with full 3D reconstruction, TLS allometry, and Jenkins et al. (2003) allometry. On average, full 3D reconstruction ultimately provided the lowest uncertainty estimate of plot-level biomass (9.6%), followed by TLS allometry (16.9%) and the national equations (20.2%). TLS offered modest improvements to the airborne LiDAR empirical models, reducing RMSE from 16.2% to 14%. Our findings suggest TLS plot acquisitions and non-destructive allometry can play a vital role for reducing uncertainty in calibration and validation data for biomass mapping in the upcoming NASA and ESA missions.
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Wang, Ling; Muralikrishnan, Bala; Rachakonda, Prem; Sawyer, Daniel
2017-01-01
Terrestrial laser scanners (TLS) are increasingly used in large-scale manufacturing and assembly where required measurement uncertainties are on the order of few tenths of a millimeter or smaller. In order to meet these stringent requirements, systematic errors within a TLS are compensated in-situ through self-calibration. In the Network method of self-calibration, numerous targets distributed in the work-volume are measured from multiple locations with the TLS to determine parameters of the TLS error model. In this paper, we propose two new self-calibration methods, the Two-face method and the Length-consistency method. The Length-consistency method is proposed as a more efficient way of realizing the Network method where the length between any pair of targets from multiple TLS positions are compared to determine TLS model parameters. The Two-face method is a two-step process. In the first step, many model parameters are determined directly from the difference between front-face and back-face measurements of targets distributed in the work volume. In the second step, all remaining model parameters are determined through the Length-consistency method. We compare the Two-face method, the Length-consistency method, and the Network method in terms of the uncertainties in the model parameters, and demonstrate the validity of our techniques using a calibrated scale bar and front-face back-face target measurements. The clear advantage of these self-calibration methods is that a reference instrument or calibrated artifacts are not required, thus significantly lowering the cost involved in the calibration process. PMID:28890607
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Tertiary Lymphoid Structure-Associated B Cells are Key Players in Anti-Tumor Immunity
Germain, Claire; Gnjatic, Sacha; Dieu-Nosjean, Marie-Caroline
2015-01-01
It is now admitted that the immune system plays a major role in tumor control. Besides the existence of tumor-specific T cells and B cells, many studies have demonstrated that high numbers of tumor-infiltrating lymphocytes are associated with good clinical outcome. In addition, not only the density but also the organization of tumor-infiltrating immune cells has been shown to determine patient survival. Indeed, more and more studies describe the development within the tumor microenvironment of tertiary lymphoid structures (TLS), whose presence has a positive impact on tumor prognosis. TLS are transient ectopic lymphoid aggregates displaying the same organization and functionality as canonical secondary lymphoid organs, with T-cell-rich and B-cell-rich areas that are sites for the differentiation of effector and memory T cells and B cells. However, factors favoring the emergence of such structures within tumors still need to be fully characterized. In this review, we survey the state of the art of what is known about the general organization, induction, and functionality of TLS during chronic inflammation, and more especially in cancer, with a particular focus on the B-cell compartment. We detail the role played by TLS B cells in anti-tumor immunity, both as antigen-presenting cells and tumor antigen-specific antibody-secreting cells, and raise the question of the capacity of chemotherapeutic and immunotherapeutic agents to induce the development of TLS within tumors. Finally, we explore how to take advantage of our knowledge on TLS B cells to develop new therapeutic tools. PMID:25755654
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The potential to characterize ecological data with terrestrial laser scanning in Harvard Forest, MA.
Orwig, D A; Boucher, P; Paynter, I; Saenz, E; Li, Z; Schaaf, C
2018-04-06
Contemporary terrestrial laser scanning (TLS) is being used widely in forest ecology applications to examine ecosystem properties at increasing spatial and temporal scales. Harvard Forest (HF) in Petersham, MA, USA, is a long-term ecological research (LTER) site, a National Ecological Observatory Network (NEON) location and contains a 35 ha plot which is part of Smithsonian Institution's Forest Global Earth Observatory (ForestGEO). The combination of long-term field plots, eddy flux towers and the detailed past historical records has made HF very appealing for a variety of remote sensing studies. Terrestrial laser scanners, including three pioneering research instruments: the Echidna Validation Instrument, the Dual-Wavelength Echidna Lidar and the Compact Biomass Lidar, have already been used both independently and in conjunction with airborne laser scanning data and forest census data to characterize forest dynamics. TLS approaches include three-dimensional reconstructions of a plot over time, establishing the impact of ice storm damage on forest canopy structure, and characterizing eastern hemlock ( Tsuga canadensis ) canopy health affected by an invasive insect, the hemlock woolly adelgid ( Adelges tsugae ). Efforts such as those deployed at HF are demonstrating the power of TLS as a tool for monitoring ecological dynamics, identifying emerging forest health issues, measuring forest biomass and capturing ecological data relevant to other disciplines. This paper highlights various aspects of the ForestGEO plot that are important to current TLS work, the potential for exchange between forest ecology and TLS, and emphasizes the strength of combining TLS data with long-term ecological field data to create emerging opportunities for scientific study.
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The potential to characterize ecological data with terrestrial laser scanning in Harvard Forest, MA
Boucher, P.; Saenz, E.; Li, Z.
2018-01-01
Contemporary terrestrial laser scanning (TLS) is being used widely in forest ecology applications to examine ecosystem properties at increasing spatial and temporal scales. Harvard Forest (HF) in Petersham, MA, USA, is a long-term ecological research (LTER) site, a National Ecological Observatory Network (NEON) location and contains a 35 ha plot which is part of Smithsonian Institution's Forest Global Earth Observatory (ForestGEO). The combination of long-term field plots, eddy flux towers and the detailed past historical records has made HF very appealing for a variety of remote sensing studies. Terrestrial laser scanners, including three pioneering research instruments: the Echidna Validation Instrument, the Dual-Wavelength Echidna Lidar and the Compact Biomass Lidar, have already been used both independently and in conjunction with airborne laser scanning data and forest census data to characterize forest dynamics. TLS approaches include three-dimensional reconstructions of a plot over time, establishing the impact of ice storm damage on forest canopy structure, and characterizing eastern hemlock (Tsuga canadensis) canopy health affected by an invasive insect, the hemlock woolly adelgid (Adelges tsugae). Efforts such as those deployed at HF are demonstrating the power of TLS as a tool for monitoring ecological dynamics, identifying emerging forest health issues, measuring forest biomass and capturing ecological data relevant to other disciplines. This paper highlights various aspects of the ForestGEO plot that are important to current TLS work, the potential for exchange between forest ecology and TLS, and emphasizes the strength of combining TLS data with long-term ecological field data to create emerging opportunities for scientific study. PMID:29503723
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A tactile display for international space station (ISS) extravehicular activity (EVA).
Rochlis, J L; Newman, D J
2000-06-01
A tactile display to increase an astronaut's situational awareness during an extravehicular activity (EVA) has been developed and ground tested. The Tactor Locator System (TLS) is a non-intrusive, intuitive display capable of conveying position and velocity information via a vibrotactile stimulus applied to the subject's neck and torso. In the Earth's 1 G environment, perception of position and velocity is determined by the body's individual sensory systems. Under normal sensory conditions, redundant information from these sensory systems provides humans with an accurate sense of their position and motion. However, altered environments, including exposure to weightlessness, can lead to conflicting visual and vestibular cues, resulting in decreased situational awareness. The TLS was designed to provide somatosensory cues to complement the visual system during EVA operations. An EVA task was simulated on a computer graphics workstation with a display of the International Space Station (ISS) and a target astronaut at an unknown location. Subjects were required to move about the ISS and acquire the target astronaut using either an auditory cue at the outset, or the TLS. Subjects used a 6 degree of freedom input device to command translational and rotational motion. The TLS was configured to act as a position aid, providing target direction information to the subject through a localized stimulus. Results show that the TLS decreases reaction time (p = 0.001) and movement time (p = 0.001) for simulated subject (astronaut) motion around the ISS. The TLS is a useful aid in increasing an astronaut's situational awareness, and warrants further testing to explore other uses, tasks and configurations.
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NASA Astrophysics Data System (ADS)
Pepe, M.; Ackermann, S.; Fregonese, L.; Achille, C.
2017-02-01
The paper describes a method for Point Clouds Color management and Integration obtained from Terrestrial Laser Scanner (TLS) and Image Based (IB) survey techniques. Especially in the Cultural Heritage (CH) environment, methods and techniques to improve the color quality of Point Clouds have a key role because a homogenous texture brings to a more accurate reconstruction of the investigated object and to a more pleasant perception of the color object as well. A color management method for point clouds can be useful in case of single data set acquired by TLS or IB technique as well as in case of chromatic heterogeneity resulting by merging different datasets. The latter condition can occur when the scans are acquired in different moments of the same day or when scans of the same object are performed in a period of weeks or months, and consequently with a different environment/lighting condition. In this paper, a procedure to balance the point cloud color in order to uniform the different data sets, to improve the chromatic quality and to highlight further details will be presented and discussed.
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NASA Astrophysics Data System (ADS)
Grussenmeyer, P.; Alby, E.; Landes, T.; Koehl, M.; Guillemin, S.; Hullo, J. F.; Assali, P.; Smigiel, E.
2012-07-01
Different approaches and tools are required in Cultural Heritage Documentation to deal with the complexity of monuments and sites. The documentation process has strongly changed in the last few years, always driven by technology. Accurate documentation is closely relied to advances of technology (imaging sensors, high speed scanning, automation in recording and processing data) for the purposes of conservation works, management, appraisal, assessment of the structural condition, archiving, publication and research (Patias et al., 2008). We want to focus in this paper on the recording aspects of cultural heritage documentation, especially the generation of geometric and photorealistic 3D models for accurate reconstruction and visualization purposes. The selected approaches are based on the combination of photogrammetric dense matching and Terrestrial Laser Scanning (TLS) techniques. Both techniques have pros and cons and recent advances have changed the way of the recording approach. The choice of the best workflow relies on the site configuration, the performances of the sensors, and criteria as geometry, accuracy, resolution, georeferencing, texture, and of course processing time. TLS techniques (time of flight or phase shift systems) are widely used for recording large and complex objects and sites. Point cloud generation from images by dense stereo or multi-view matching can be used as an alternative or as a complementary method to TLS. Compared to TLS, the photogrammetric solution is a low cost one, as the acquisition system is limited to a high-performance digital camera and a few accessories only. Indeed, the stereo or multi-view matching process offers a cheap, flexible and accurate solution to get 3D point clouds. Moreover, the captured images might also be used for models texturing. Several software packages are available, whether web-based, open source or commercial. The main advantage of this photogrammetric or computer vision based technology is to get at the same time a point cloud (the resolution depends on the size of the pixel on the object), and therefore an accurate meshed object with its texture. After matching and processing steps, we can use the resulting data in much the same way as a TLS point cloud, but in addition with radiometric information for textures. The discussion in this paper reviews recording and important processing steps as geo-referencing and data merging, the essential assessment of the results, and examples of deliverables from projects of the Photogrammetry and Geomatics Group (INSA Strasbourg, France).
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2009-09-01
boarding team, COTS, WLAN, smart antenna, OpenVPN application, wireless base station, OFDM, latency, point-to-point wireless link. 16. PRICE CODE 17...16 c. SSL/TLS .................................17 2. OpenVPN ......................................17 III. EXPERIMENT METHODOLOGY...network frame at Layer 2 has already been secured by encryption at a higher level. 2. OpenVPN OpenVPN is open source software that provides a VPN
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An Analysis of the Computer Security Ramifications of Weakened Asymmetric Cryptographic Algorithms
2012-06-01
OpenVPN (Yonan). TLS (and by extension SSL) obviously rely on encryption to provide the confidentiality, integrity and authentication services it...Secure Shell (SSH) Transport Layer Protocol.” IETF, Jan. 2006. <tools.ietf.org/html/rfc4253> Yonan, James, and Mattock. " OpenVPN ." SourceForge...11 May 2012. <http://sourceforge.net/projects/ openvpn /> 92 REPORT DOCUMENTATION PAGE Form Approved OMB No. 074-0188 The public reporting
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Three Dimentional Reconstruction of Large Cultural Heritage Objects Based on Uav Video and Tls Data
NASA Astrophysics Data System (ADS)
Xu, Z.; Wu, T. H.; Shen, Y.; Wu, L.
2016-06-01
This paper investigates the synergetic use of unmanned aerial vehicle (UAV) and terrestrial laser scanner (TLS) in 3D reconstruction of cultural heritage objects. Rather than capturing still images, the UAV that equips a consumer digital camera is used to collect dynamic videos to overcome its limited endurance capacity. Then, a set of 3D point-cloud is generated from video image sequences using the automated structure-from-motion (SfM) and patch-based multi-view stereo (PMVS) methods. The TLS is used to collect the information that beyond the reachability of UAV imaging e.g., partial building facades. A coarse to fine method is introduced to integrate the two sets of point clouds UAV image-reconstruction and TLS scanning for completed 3D reconstruction. For increased reliability, a variant of ICP algorithm is introduced using local terrain invariant regions in the combined designation. The experimental study is conducted in the Tulou culture heritage building in Fujian province, China, which is focused on one of the TuLou clusters built several hundred years ago. Results show a digital 3D model of the Tulou cluster with complete coverage and textural information. This paper demonstrates the usability of the proposed method for efficient 3D reconstruction of heritage object based on UAV video and TLS data.
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Zhang, Li; Wu, Wei-Chun; Ma, Hong; Wang, Hao
2016-11-15
Layer-specific strain allows the assessment of the function of every layer of myocardium. To evaluate the changes of non-ST-segment elevation acute coronary syndrome(NSTE-ACS) patients with and without complex coronary artery disease(CAD) by layer-specific strain and determine if myocardial strain can identify complex CAD and assess the severity of coronary lesions as defined by Syntax score (SS). A total of 139 patients undergoing coronary angiography due to suspected NSTE-ACS were prospectively enrolled. Echocardiography was performed 1h before angiography. Global longitudinal strain (GLS), territorial longitudinal strain (TLS), global circumferential strain (GCS) and territorial circumferential strain (TCS) of the three layers of LV wall were assessed by two-dimensional (2D) speckle tracking echocardiography (STE) with layer-specific myocardial deformation quantitative analysis based on the perfusion territories of the three major coronary arteries in an 18-segment model of LV. SS was used for predicting the severity of coronary lesions in patients with complex CAD. 78 had complex CAD, 32 had 1- or 2-vessel disease and 29 had no significant coronary stenosis confirmed by coronary angiography. According to SS value, 78 complex CAD subjects were subdivided into three groups, 24 in group SS 1 (SS≤22), 26 in group SS 2 (SS 23-32) and 28 in group SS 3 (SS≥33). Compared to the other two groups without complex CAD, patients with NSTE-ACS due to complex CAD had worse function in all 3 myocardial layers assessed by GLS, TLS, GCS and TCS. Endocardial GLS and TLS (all, P<0.01) were most affected. The absolute differences between endocardial and epicardial GLS and TLS were lower in magnitude in patients with complex CAD than in those without (all, P<0.001), and the more complex of coronary lesion, the lower magnitude of the parameters(all, P<0.001). Endocardial GLS and TLS were closely correlated with SS value(r=-0.751 and r=-0.753, respectively; P<0.001). By receiver-operating characteristic curve analysis, endocardial GLS and TLS demonstrated the highest area under curve, showing better diagnostic accuracy (endocardial GLS: value<-21.35% had 72% sensitivity, 84% specificity and area under the curve ¼0.846; endocardial TLS: value<-20.15% had 72% sensitivity, 88% specificity and area under the curve ¼0.852) than GCS, TCS, mid-myocardial and epicardial GLS, and TLS(all, P<0.05). Strains, particularly endocardial GLS and TLS measurement by 2DSTE might enable a non-invasive method to identify complex CAD and predict the severity of coronary lesions in patients with NSTE-ACS. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
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Lopes-Kulishev, Carina O; Alves, Ingrid R; Valencia, Estela Y; Pidhirnyj, María I; Fernández-Silva, Frank S; Rodrigues, Ticiane R; Guzzo, Cristiane R; Galhardo, Rodrigo S
2015-09-01
The SOS response is a universal bacterial regulon involved in the cellular response to DNA damage and other forms of stress. In Caulobacter crescentus, previous work has identified a plethora of genes that are part of the SOS regulon, but the biological roles of several of them remain to be determined. In this study, we report that two genes, hereafter named mmcA and mmcB, are involved in the defense against DNA damage caused by mitomycin C (MMC), but not against lesions induced by other common DNA damaging agents, such as UVC light, methyl methanesulfonate (MMS) and hydrogen peroxide. mmcA is a conserved gene that encodes a member of the glyoxalases/dioxygenases protein family, and acts independently of known DNA repair pathways. On the other hand, epistasis analysis showed that mmcB acts in the same pathway as imuC (dnaE2), and is required specifically for MMC-induced mutagenesis, but not for that induced by UV light, suggesting a role for MmcB in translesion synthesis-dependent repair of MMC damage. We show that the lack of MMC-induced mutability in the mmcB strain is not caused by lack of proper SOS induction of the imuABC operon, involved in translesion synthesis (TLS) in C. crescentus. Based on this data and on structural analysis of a close homolog, we propose that MmcB is an endonuclease which creates substrates for ImuABC-mediated TLS patches. Copyright © 2015 Elsevier B.V. All rights reserved.
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NASA Astrophysics Data System (ADS)
Revuelto, Jesús; Jonas, Tobias; López-Moreno, Juan Ignacio
2015-04-01
Snow distribution in mountain areas plays a key role in many processes as runoff dynamics, ecological cycles or erosion rates. Nevertheless, the acquisition of high resolution snow depth data (SD) in space-time is a complex task that needs the application of remote sensing techniques as Terrestrial Laser Scanning (TLS). Such kind of techniques requires intense field work for obtaining high quality snowpack evolution during a specific time period. Combining TLS data with other remote sensing techniques (satellite images, photogrammetry…) and in-situ measurements could represent an improvement of the available information of a variable with rapid topographic changes. The aim of this study is to reconstruct daily SD distribution from lapse-rate images from a webcam and data from two to three TLS acquisitions during the snow melting periods of 2012, 2013 and 2014. This information is obtained at Izas Experimental catchment in Central Spanish Pyrenees; a catchment of 33ha, with an elevation ranging from 2050 to 2350m a.s.l. The lapse-rate images provide the Snow Covered Area (SCA) evolution at the study site, while TLS allows obtaining high resolution information of SD distribution. With ground control points, lapse-rate images are georrectified and their information is rasterized into a 1-meter resolution Digital Elevation Model. Subsequently, for each snow season, the Melt-Out Date (MOD) of each pixel is obtained. The reconstruction increases the estimated SD lose for each time step (day) in a distributed manner; starting the reconstruction for each grid cell at the MOD (note the reverse time evolution). To do so, the reconstruction has been previously adjusted in time and space as follows. Firstly, the degree day factor (SD lose/positive average temperatures) is calculated from the information measured at an automatic weather station (AWS) located in the catchment. Afterwards, comparing the SD lose at the AWS during a specific time period (i.e. between two TLS acquisitions) to that melted on each grid cell, a coefficient is obtained for spatially distributing the SD loses. For 2012 and 2013, three TLS acquisition campaigns were available during each melting period. This way the first acquisitions of both melting periods were reserved for validation while the other two were considered for adjusting the reconstruction. Validation has revealed a very good performance of the reconstructed SD distribution when compared with the TLS data (r2 values between 0.74 and 0.8 respectively). When no calibration with TLS data was applied for distributing melt rates; this is, using the distribution coefficients for reconstructing SD of precedent years, rather similar accuracy was reached. With the spatial calibration of 2012 and 2013, the reconstructions for the two TLS acquisition dates in 2014, obtained r2 values that ranged between 0.73 and 0.76. This shows the usefulness of lapse-rate images to estimate not only SCA but also the spatial distribution of the SD when combined with TLS acquisition and punctual information on temperature and SD. In such a way it is shown the effectiveness of combining two remote sensing techniques for obtaining distributed information on snow depth.
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NASA Astrophysics Data System (ADS)
Phillips, D. A.; Wang, G.; Joyce, J.; Rivera, F. O.; Galan, G.; Meertens, C. M.
2010-12-01
Terrestrial Laser Scanning (TLS) and Global Positioning System (GPS) technologies provide comprehensive information of landslide deformation in the both spatial and temporal domains, which are critical to study the dynamics and kinematics of landslides. TLS allows the generation of a precise 3D model of a landslide surface by deriving spatial deformation from consecutive TLS campaigns. Continuous GPS (CGPS) monitoring allows the generation of the displacement time series of single points. Integrated TLS and CGPS datasets were collected at the base of a 500-600 meter long landslide on a steep mountain slope in the El Yunque National Rainforest in Puerto Rico. Major movements of this landslide in 2004 and 2005 caused the closing of one of three remaining access roads to the national forest. A retaining wall was constructed to restrain the landslide and allow the road reopen. Prior to termination of the wall a significant portion of the northwest end of the wall failed. This portion was repaired but prior to final termination in August 2009 significant soil displacements behind the failed section thwarted final grading efforts. Geologic investigation indicated that the landslide extended much further upslope than indicated and involved bedrock as well as overlying residual soils. Striations along flank escarpments indicated displacement of the entire landslide to the northwest but active displacement could only be certified in the lower most portions behind the retaining wall. The northwest portion of the wall continued to show flexural deformation until it finally burst in July 2010. The size and displacement magnitude of the presently moving mass has become a major focus of investigation. To precisely identify the present boundaries and displacement magnitude of the lower portions of the landslide, we performed two TLS campaigns at the landslide site in May and August 2010. A continuous GPS array consisting of 3 stations was also installed at the site, one of which was located outside of the landslide as a stable reference point. Topcon GB-1000 dual frequency receivers and PG-A1 antennas were used to collect the GPS data. GPS data were processed using Topcon software. A Riegl VZ-400 laser scanner, provided by UNAVCO, was used to collect the TLS data. This scanner provides high resolution, high-speed data acquisition using a narrow infrared laser beam and a fast scanning mechanism. Centimeter-level scans from 12 scan positions were performed during each TLS campaign. TLS data acquisition and global registration were performed using RIEGL RiSCAN-PRO software. The Generic Mapping Tools (GMT, http://gmt.soest.hawaii.edu), a software package widely utilized in the geophysical community, was used for data post processing and map plotting. Our TLS and GPS results have clearly identified the boundaries, the rate and direction of displacement, and the volume change of the lower portions of presently sliding mass. Rainfall data from a local USGS weather station were also integrated to this study. Our results indicate close correlation between landslide movements and rainfall.
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NASA Astrophysics Data System (ADS)
Klapa, Przemyslaw; Mitka, Bartosz; Zygmunt, Mariusz
2017-12-01
The terrestrial laser scanning technology has a wide spectrum of applications, from land surveying, civil engineering and architecture to archaeology. The technology is capable of obtaining, in a short time, accurate coordinates of points which represent the surface of objects. Scanning of buildings is therefore a process which ensures obtaining information on all structural elements a building. The result is a point cloud consisting of millions of elements which are a perfect source of information on the object and its surrounding. The photogrammetric techniques allow documenting an object in high resolution in the form of orthophoto plans, or are a basis to develop 2D documentation or obtain point clouds for objects and 3D modelling. Integration of photogrammetric data and TLS brings a new quality in surveying historic monuments. Historic monuments play an important cultural and historical role. Centuries-old buildings require constant renovation and preservation of their structural and visual invariability while maintaining safety of people who use them. The full process of surveying allows evaluating the actual condition of monuments and planning repairs and renovations. Huge sizes and specific types of historic monuments cause problems in obtaining reliable and full information on them. The TLS technology allows obtaining such information in a short time and is non-invasive. A point cloud is not only a basis for developing architectural and construction documentation or evaluation of actual condition of a building. It also is a real visualization of monuments and their entire environment. The saved image of object surface can be presented at any time and place. A cyclical TLS survey of historic monuments allows detecting structural changes and evaluating damage and changes that cause deformation of monument’s components. The paper presents application of integrated photogrammetric data and TLS illustrated on an example of historic monuments from southern Poland. The cartographic materials are a basis for determining the actual condition of monuments and performing repair works. The materials also supplement the archive of monuments by means of recording the actual image of a monument in a virtual space.
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NASA Astrophysics Data System (ADS)
Lin, Yi; West, Geoff
2016-08-01
As an important canopy structure indicator, leaf area index (LAI) proved to be of considerable implications for forest ecosystem and ecological studies, and efficient techniques for accurate LAI acquisitions have long been highlighted. Airborne light detection and ranging (LiDAR), often termed as airborne laser scanning (ALS), once was extensively investigated for this task but showed limited performance due to its low sampling density. Now, ALS systems exhibit more competing capacities such as high density and multi-return sampling, and hence, people began to ask the questions like-;can ALS now work better on the task of LAI prediction?; As a re-examination, this study investigated the feasibility of LAI retrievals at the individual tree level based on high density and multi-return ALS, by directly considering the vertical distributions of laser points lying within each tree crown instead of by proposing feature variables such as quantiles involving laser point distribution modes at the plot level. The examination was operated in the case of four tree species (i.e. Picea abies, Pinus sylvestris, Populus tremula and Quercus robur) in a mixed forest, with their LAI-related reference data collected by using static terrestrial laser scanning (TLS). In light of the differences between ALS- and TLS-based LAI characterizations, the methods of voxelization of 3D scattered laser points, effective LAI (LAIe) that does not distinguish branches from canopies and unified cumulative LAI (ucLAI) that is often used to characterize the vertical profiles of crown leaf area densities (LADs) was used; then, the relationships between the ALS- and TLS-derived LAIes were determined, and so did ucLAIs. Tests indicated that the tree-level LAIes for the four tree species can be estimated based on the used airborne LiDAR (R2 = 0.07, 0.26, 0.43 and 0.21, respectively) and their ucLAIs can also be derived. Overall, this study has validated the usage of the contemporary high density multi-return airborne LiDARs for LAIe and LAD profile retrievals at the individual tree level, and the contribution are of high potential for advancing forest ecosystem modeling and ecological understanding.
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The association of transequatorial loops in the solar corona with coronal mass ejection onset
NASA Astrophysics Data System (ADS)
Glover, A.; Harra, L. K.; Matthews, S. A.; Foley, C. A.
2003-03-01
It has been shown that transequatorial loops can disappear in association with the onset of a coronal mass ejection (CME) (Khan & Hudson \\cite{khan}). We extend this result by considering a larger sample of transequatorial loop systems (TLS) to investigate their associated flaring and CME activity. We find 10 of a total 18 TLS considered here to be associated with flaring and CME onset originating from a connected active region. A total 33 cases of flaring and associated CME onset are observed from these 10 systems during their lifetime. We observe the influence of this activity on the TLS in each case. In contrast to the Khan & Hudson result, we find evidence that transequatorial loop eruption leading to soft X-ray brightening equivalent in temperature to a B-class flare is equally as common as dimming in the corona. Consequently we conclude that the scenario observed by Khan & Hudson is not universal and that other types of CME-TLS association occur. It was found that for transequatorial loops that were associated with CMEs the asymmetry in longitude was larger than for those that were not associated to a CME by 10o. In addition, the extent in latitude (as a measure of the loop length) was nearly twice as large for those TLS associated with CMEs than those that were not. The asymmetry in latitude was actually on average larger for those TLS not associated with CMEs, than for those that were. This suggests that differential rotation is not a major contributor to the production of CMEs from transequatorial loops. Instead it is more likely for a CME to be produced if the loop is long, and if there is a large asymmetry in longitude. The implications of these results for CME onset prediction are discussed.
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Kobayashi, Kaori; Guilliam, Thomas A; Tsuda, Masataka; Yamamoto, Junpei; Bailey, Laura J; Iwai, Shigenori; Takeda, Shunichi; Doherty, Aidan J; Hirota, Kouji
2016-08-02
PrimPol is a DNA damage tolerance enzyme possessing both translesion synthesis (TLS) and primase activities. To uncover its potential role in TLS-mediated IgVλ hypermutation and define its interplay with other TLS polymerases, PrimPol(-/-) and PrimPol(-/-)/Polη(-/-)/Polζ (-/-) gene knockouts were generated in avian cells. Loss of PrimPol had no significant impact on the rate of hypermutation or the mutation spectrum of IgVλ. However, PrimPol(-/-) cells were sensitive to methylmethane sulfonate, suggesting that it may bypass abasic sites at the IgVλ segment by repriming DNA synthesis downstream of these sites. PrimPol(-/-) cells were also sensitive to cisplatin and hydroxyurea, indicating that it assists in maintaining / restarting replication at a variety of lesions. To accurately measure the relative contribution of the TLS and primase activities, we examined DNA damage sensitivity in PrimPol(-/-) cells complemented with polymerase or primase-deficient PrimPol. Polymerase-defective, but not primase-deficient, PrimPol suppresses the hypersensitivity of PrimPol(-/-) cells. This indicates that its primase, rather than TLS activity, is pivotal for DNA damage tolerance. Loss of TLS polymerases, Polη and Polζ has an additive effect on the sensitivity of PrimPol(-/-) cells. Moreover, we found that PrimPol and Polη-Polζ redundantly prevented cell death and facilitated unperturbed cell cycle progression. PrimPol(-/-) cells also exhibited increased sensitivity to a wide variety of chain-terminating nucleoside analogs (CTNAs). PrimPol could perform close-coupled repriming downstream of CTNAs and oxidative damage in vitro. Together, these results indicate that PrimPol's repriming activity plays a central role in reinitiating replication downstream from CTNAs and other specific DNA lesions.
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Genetic Control of Replication through N1-methyladenine in Human Cells*
Conde, Juan; Yoon, Jung-Hoon; Roy Choudhury, Jayati; Prakash, Louise; Prakash, Satya
2015-01-01
N1-methyl adenine (1-MeA) is formed in DNA by reaction with alkylating agents and naturally occurring methyl halides. The 1-MeA lesion impairs Watson-Crick base pairing and blocks normal DNA replication. Here we identify the translesion synthesis (TLS) DNA polymerases (Pols) required for replicating through 1-MeA in human cells and show that TLS through this lesion is mediated via three different pathways in which Pols ι and θ function in one pathway and Pols η and ζ, respectively, function in the other two pathways. Our biochemical studies indicate that in the Polι/Polθ pathway, Polι would carry out nucleotide insertion opposite 1-MeA from which Polθ would extend synthesis. In the Polη pathway, this Pol alone would function at both the nucleotide insertion and extension steps of TLS, and in the third pathway, Polζ would extend from the nucleotide inserted opposite 1-MeA by an as yet unidentified Pol. Whereas by pushing 1-MeA into the syn conformation and by forming Hoogsteen base pair with the T residue, Polι would carry out TLS opposite 1-MeA, the ability of Polη to replicate through 1-MeA suggests that despite its need for Watson-Crick hydrogen bonding, Polη can stabilize the adduct in its active site. Remarkably, even though Pols η and ι are quite error-prone at inserting nucleotides opposite 1-MeA, TLS opposite this lesion in human cells occurs in a highly error-free fashion. This suggests that the in vivo fidelity of TLS Pols is regulated by factors such as post-translational modifications, protein-protein interactions, and possibly others. PMID:26491020
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Oh, Eun Hye; Ko, Dae-Hyun; Seo, Hyungil; Chang, Kiju; Kim, Gwang-Un; Song, Eun Mi; Seo, Myeongsook; Lee, Ho-Su; Hwang, Sung Wook; Yang, Dong-Hoon; Ye, Byong Duk; Byeon, Jeong-Sik; Myung, Seung-Jae; Yang, Suk-Kyun; Park, Sang Hyoung
2017-01-01
AIM To investigate the clinical implications of infliximab trough levels (IFX-TLs) and antibodies to infliximab (ATI) levels in Crohn’s disease (CD) patients in Asian countries. METHODS IFX-TL and ATI level were measured using prospectively collected samples obtained with informed consent from CD patients being treated at Asan Medical Center, South Korea. We analyzed the correlations between IFX-TLs/ATI levels and the clinical activity of CD (quiescent vs active disease) based on the CD activity index, C-reactive protein level, and physician’s judgment of patients’ clinical status at enrollment. The impact of concomitant immunomodulators was also investigated. RESULTS This study enrolled 138 patients with CD (84 with quiescent and 54 with active disease). In patients with quiescent and active diseases, the median IFX-TLs were 1.423 μg/mL and 0.163 μg/mL, respectively (P < 0.001) and the median ATI levels were 8.064 AU/mL and 11.209 AU/mL, respectively (P < 0.001). In the ATI-negative and -positive groups, the median IFX-TLs were 1.415 μg/mL and 0.141 μg/mL, respectively (P < 0.001). In patients with and without concomitant immunomodulator use, there were no differences in IFX-TLs (0.632 μg/mL and 1.150 μg/mL, respectively; P = 0.274) or ATI levels (8.655 AU/mL and 9.017 AU/mL, respectively; P = 0.083). CONCLUSION IFX-TL/ATI levels were well correlated with the clinical activity in South Korean CD patients. Our findings support the usefulness of IFX-TLs/ATI levels in treating CD patients receiving IFX in clinical practice. PMID:28293096
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Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel
2016-08-06
We investigate the online processing consequences of encountering compound words with transposed letters (TLs), in order to determine if cross-morpheme TLs are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morphemes (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longermore » reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Our findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favour of whole-word access of English compound words during sentence reading.« less
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Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel
2017-01-01
The current study investigates the online processing consequences of encountering compound words with transposed letters (TLs), to determine if TLs that cross morpheme boundaries are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morpheme boundaries (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longer reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favor of whole-word access of English compound words during sentence reading. PMID:28791313
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Measuring Leaf Water Content Using Multispectral Terrestrial Laser Scanning
NASA Astrophysics Data System (ADS)
Junttila, S.; Vastaranta, M.; Linnakoski, R.; Sugano, J.; Kaartinen, H.; Kukko, A.; Holopainen, M.; Hyyppä, H.; Hyyppä, J.
2017-10-01
Climate change is increasing the amount and intensity of disturbance events, i.e. drought, pest insect outbreaks and fungal pathogens, in forests worldwide. Leaf water content (LWC) is an early indicator of tree stress that can be measured remotely using multispectral terrestrial laser scanning (MS-TLS). LWC affects leaf reflectance in the shortwave infrared spectrum which can be used to predict LWC from spatially explicit MS-TLS intensity data. Here, we investigated the relationship between LWC and MS-TLS intensity features at 690 nm, 905 nm and 1550 nm wavelengths with Norway spruce seedlings in greenhouse conditions. We found that a simple ratio of 905 nm and 1550 nm wavelengths was able to explain 84 % of the variation (R2) in LWC with a respective prediction accuracy of 0.0041 g/cm2. Our results showed that MS-TLS can be used to estimate LWC with a reasonable accuracy in environmentally stable conditions.
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Langridge, Alexander; Musgrave, Kathryn; Upadhye, Yogesh
2016-03-09
A 78-year-old man, with a 6-year history of stable chronic myelomonocytic leukaemia (CMML), presented with general deterioration and worsening pancytopenia. Bone marrow biopsy showed that his disease had transformed into acute myeloid leukaemia (AML). He was started on a supportive transfusion regimen and did not receive any chemotherapy or corticosteroids. Several weeks later, he developed acute renal failure and was admitted to a medical admissions ward. Spontaneous tumour lysis syndrome (sTLS, grade 1) was diagnosed, as per the Cairo and Bishop criteria. He was treated with intravenous fluids, rasburicase and allopurinol. His renal function improved and he recovered from the sTLS. The authors believe that this is the first published case of sTLS occurring as a result of CMML transforming into AML; it highlights the importance of recognising sTLS as a cause of renal failure and electrolyte disturbance before cancer treatment begins. 2016 BMJ Publishing Group Ltd.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel
We investigate the online processing consequences of encountering compound words with transposed letters (TLs), in order to determine if cross-morpheme TLs are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morphemes (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longermore » reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Our findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favour of whole-word access of English compound words during sentence reading.« less
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Evaluating and redesigning teaching learning sequences at the introductory physics level
NASA Astrophysics Data System (ADS)
Guisasola, Jenaro; Zuza, Kristina; Ametller, Jaume; Gutierrez-Berraondo, José
2017-12-01
In this paper we put forward a proposal for the design and evaluation of teaching and learning sequences in upper secondary school and university. We will connect our proposal with relevant contributions on the design of teaching sequences, ground it on the design-based research methodology, and discuss how teaching and learning sequences designed according to our proposal relate to learning progressions. An iterative methodology for evaluating and redesigning the teaching and learning sequence (TLS) is presented. The proposed assessment strategy focuses on three aspects: (a) evaluation of the activities of the TLS, (b) evaluation of learning achieved by students in relation to the intended objectives, and (c) a document for gathering the difficulties found when implementing the TLS to serve as a guide to teachers. Discussion of this guide with external teachers provides feedback used for the TLS redesign. The context of our implementation and evaluation is an innovative calculus-based physics course for first-year engineering and science degree students at the University of the Basque Country.
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Pustovalova, Yulia; Magalhães, Mariana T. Q.; D’Souza, Sanjay; Rizzo, Alessandro A.; Korza, George; Walker, Graham C.; Korzhnev, Dmitry M.
2016-01-01
Translesion synthesis (TLS) is a mutagenic branch of cellular DNA damage tolerance that enables bypass replication over DNA lesions carried out by specialized low-fidelity DNA polymerases. The replicative bypass of most types of DNA damage is performed in a two-step process of Rev1/Polζ-dependent TLS. In the first step, a Y-family TLS enzyme, typically Polη, Polι or Polκ, inserts a nucleotide across DNA lesion. In the second step, a four-subunit B-family DNA polymerase Polζ (Rev3/Rev7/PolD2/PolD3 complex) extends the distorted DNA primer-template. The coordinated action of error-prone TLS enzymes is regulated through their interactions with the two scaffold proteins, the sliding clamp PCNA and the TLS polymerase Rev1. Rev1 interactions with all other TLS enzymes are mediated by its C-terminal domain (Rev1-CT), which can simultaneously bind the Rev7 subunit of Polζ and Rev1-interacting regions (RIRs) from Polη, Polι or Polκ. In this work, we identified a previously unknown RIR motif in the C-terminal part of PolD3 subunit of Polζ whose interaction with the Rev1-CT is among the tightest mediated by RIR motifs. Three-dimensional structure of the Rev1-CT/PolD3-RIR complex determined by NMR spectroscopy revealed a structural basis for the relatively high affinity of this interaction. The unexpected discovery of PolD3-RIR motif suggests a mechanism of 'inserter' to 'extender' DNA polymerase switch upon Rev1/Polζ-dependent TLS, in which the PolD3-RIR binding to the Rev1-CT (i) helps displace the 'inserter' Polη, Polι or Polκ from its complex with Rev1, and (ii) facilitates assembly of the four-subunit 'extender' Polζ through simultaneous interaction of Rev1-CT with Rev7 and PolD3 subunits. PMID:26982350
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Accurate documentation in cultural heritage by merging TLS and high-resolution photogrammetric data
NASA Astrophysics Data System (ADS)
Grussenmeyer, Pierre; Alby, Emmanuel; Assali, Pierre; Poitevin, Valentin; Hullo, Jean-François; Smigiel, Eddie
2011-07-01
Several recording techniques are used together in Cultural Heritage Documentation projects. The main purpose of the documentation and conservation works is usually to generate geometric and photorealistic 3D models for both accurate reconstruction and visualization purposes. The recording approach discussed in this paper is based on the combination of photogrammetric dense matching and Terrestrial Laser Scanning (TLS) techniques. Both techniques have pros and cons, and criteria as geometry, texture, accuracy, resolution, recording and processing time are often compared. TLS techniques (time of flight or phase shift systems) are often used for the recording of large and complex objects or sites. Point cloud generation from images by dense stereo or multi-image matching can be used as an alternative or a complementary method to TLS. Compared to TLS, the photogrammetric solution is a low cost one as the acquisition system is limited to a digital camera and a few accessories only. Indeed, the stereo matching process offers a cheap, flexible and accurate solution to get 3D point clouds and textured models. The calibration of the camera allows the processing of distortion free images, accurate orientation of the images, and matching at the subpixel level. The main advantage of this photogrammetric methodology is to get at the same time a point cloud (the resolution depends on the size of the pixel on the object), and therefore an accurate meshed object with its texture. After the matching and processing steps, we can use the resulting data in much the same way as a TLS point cloud, but with really better raster information for textures. The paper will address the automation of recording and processing steps, the assessment of the results, and the deliverables (e.g. PDF-3D files). Visualization aspects of the final 3D models are presented. Two case studies with merged photogrammetric and TLS data are finally presented: - The Gallo-roman Theatre of Mandeure, France); - The Medieval Fortress of Châtel-sur-Moselle, France), where a network of underground galleries and vaults has been recorded.
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Akande, Manzilat; Audino, Anthony N; Tobias, Joseph D
2017-01-01
Rasburicase, used in the prevention and treatment of tumor lysis syndrome (TLS), may cause hemolytic anemia and methemoglobinemia in patients with glucose-6-phosphate dehydrogenase (G6PD) deficiency. Although routine screening for G6PD deficiency has been recommended, given the turnaround time for test results and the urgency to treat TLS, such screening may not be feasible. We report a case of rasburicase-induced hemolytic anemia without methemoglobinemia in an adolescent with T-cell lymphoblastic lymphoma, TLS, and previously unrecognized G6PD deficiency. Previous reports of hemolytic anemia with rasburicase are reviewed, mechanisms discussed, and preventative strategies presented.
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Integration of multi-sensor data to measure soil surface changes
NASA Astrophysics Data System (ADS)
Eltner, Anette; Schneider, Danilo
2016-04-01
Digital elevation models (DEM) of high resolution and accuracy covering a suitable sized area of interest can be a promising approach to help understanding the processes of soil erosion. Thereby, the plot under investigation should remain undisturbed. The fragile marl landscape in Andalusia (Spain) is especially prone to soil detachment and transport with unique sediment connectivity characteristics due to the soil properties and climatic conditions. A 600 m² field plot is established and monitored during three field campaigns (Sep. 2013, Nov. 2013 and Feb. 2014). Unmanned aerial vehicle (UAV) photogrammetry and terrestrial laser scanning (TLS) are suitable tools to generate high resolution topography data that describe soil surface changes at large field plots. Thereby, the advantages of both methods are utilised in a synergetic manner. On the one hand, TLS data is assumed to comprise a higher reliability regarding consistent error behaviour than DEMs derived from overlapping UAV images. Therefore, global errors (e.g. dome effect) and local errors (e.g. DEM blunders due to erroneous image matching) within the UAV data are assessed with the DEMs produced by TLS. Furthermore, TLS point clouds allow for fast and reliable filtering of vegetation spots, which is not as straightforward within the UAV data due to known image matching problems in areas displaying plant cover. On the other hand, systematic DEM errors linked to TLS are detected and possibly corrected utilising the DEMs reconstructed from overlapping UAV images. Furthermore, TLS point clouds are filtered corresponding to the degree of point quality, which is estimated from parameters of the scan geometry (i.e. incidence angle and footprint size). This is especially relevant for this study because the area of interest is located at gentle hillslopes that are prone to soil erosion. Thus, the view of the scanning device onto the surface results in an adverse angle, which is solely slightly improved by the usage of a 4 m high tripod. Surface roughness is considered as a further parameter to evaluate the TLS point quality. The filtering tool allows for choosing each data point either from the TLS or UAV data corresponding to the data acquisition geometry and surface properties. The filtered points are merged into one point cloud, which is finally processed to reduce remaining data noise. DEM analysis reveals a continuous decrease of soil surface roughness after tillage, the reappearance of former wheel tracks and local patterns of erosion as well as accumulation.
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THz limb sounder (TLS) for lower thermospheric wind, oxygen density, and temperature
NASA Astrophysics Data System (ADS)
Wu, Dong L.; Yee, Jeng-Hwa; Schlecht, Erich; Mehdi, Imran; Siles, Jose; Drouin, Brian J.
2016-07-01
Neutral winds are one of the most critical measurements in the lower thermosphere and E region ionosphere (LTEI) for understanding complex electrodynamic processes and ion-neutral interactions. We are developing a high-sensitivity, low-power, noncryogenic 2.06 THz Schottky receiver to measure wind profiles at 100-140 km. The new technique, THz limb sounder (TLS), aims to measure LTEI winds by resolving the wind-induced Doppler shift of 2.06 THz atomic oxygen (OI) emissions. As a transition between fine structure levels in the ground electronic state, the OI emission is in local thermodynamic equilibrium (LTE) at altitudes up to 350 km. This LTE property, together with day-and-night capability and small line-of-sight gradient, makes the OI limb sounding a very attractive technique for neutral wind observations. In addition to the wind measurement, TLS can also retrieve [OI] density and neutral temperature in the LTEI region. TLS leverages rapid advances in THz receiver technologies including subharmonically pumped (SHP) mixers and Schottky-diode-based power multipliers. Current SHP Schottky receivers have produced good sensitivity for THz frequencies at ambient environment temperatures (120-150 K), which are achievable through passively cooling in spaceflight. As an emerging technique, TLS can fill the critical data gaps in the LTEI neutral wind observations to enable detailed studies on the coupling and dynamo processes between charged and neutral molecules.
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THz Limb Sounder (TLS) for Lower Thermospheric Wind, Oxygen Density, and Temperature
NASA Technical Reports Server (NTRS)
Wu, Dong L.; Yee, Jeng-Hwa; Schlecht, Erich; Mehdi, Imran; Siles, Jose; Drouin, Brian J.
2016-01-01
Neutral winds are one of the most critical measurements in the lower thermosphere and E region ionosphere (LTEI) for understanding complex electrodynamic processes and ion-neutral interactions. We are developing a high-sensitivity, low-power, noncryogenic 2.06 THz Schottky receiver to measure wind profiles at 100-140 km. The new technique, THz limb sounder (TLS), aims to measure LTEI winds by resolving the wind-induced Doppler shift of 2.06 THz atomic oxygen (OI) emissions. As a transition between fine structure levels in the ground electronic state, the OI emission is in local thermodynamic equilibrium(LTE) at altitudes up to 350km. This LTE property, together with day-and-night capability and small line-of-sight gradient, makes the OI limb sounding a very attractive technique for neutral wind observations. In addition to the wind measurement, TLS can also retrieve [OI] density and neutral temperature in the LTEI region. TLS leverages rapid advances in THz receiver technologies including subharmonically pumped (SHP)mixers and Schottky-diode-based power multipliers. Current SHP Schottky receivers have produced good sensitivity for THz frequencies at ambient environment temperatures (120-150 K), which are achievable through passively cooling in spaceflight. As an emerging technique, TLS can fill the critical data gaps in the LTEI neutral wind observations to enable detailed studies on the coupling and dynamo processes between charged and neutral molecules.
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Teaching/Learning Methods and Students' Classification of Food Items
ERIC Educational Resources Information Center
Hamilton-Ekeke, Joy-Telu; Thomas, Malcolm
2011-01-01
Purpose: This study aims to investigate the effectiveness of a teaching method (TLS (Teaching/Learning Sequence)) based on a social constructivist paradigm on students' conceptualisation of classification of food. Design/methodology/approach: The study compared the TLS model developed by the researcher based on the social constructivist paradigm…
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TES/Aura L2 Atmospheric Temperatures Limb V6 (TL2TLS)
Atmospheric Science Data Center
2018-03-01
TES/Aura L2 Atmospheric Temperatures Limb (TL2TLS) News: TES News ... Level: L2 Platform: TES/Aura L2 Atmospheric Temperatures Spatial Coverage: 27 x 23 km Limb ... OPeNDAP Access: OPeNDAP Parameters: Atmospheric Temperature Temperature Precision Vertical Resolution ...
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Teaching Air Pollution in an Authentic Context
ERIC Educational Resources Information Center
Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine
2017-01-01
This paper describes a teaching-learning sequence (TLS) about air pollution and the findings resulting from its implementation by pre-service elementary teachers (PET) currently undergraduate students of the Department of Primary Education in the National and Kapodistrian University of Athens, Greece. The TLS focused on the relation of air…
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Automated estimation of leaf distribution for individual trees based on TLS point clouds
NASA Astrophysics Data System (ADS)
Koma, Zsófia; Rutzinger, Martin; Bremer, Magnus
2017-04-01
Light Detection and Ranging (LiDAR) especially the ground based LiDAR (Terrestrial Laser Scanning - TLS) is an operational used and widely available measurement tool supporting forest inventory updating and research in forest ecology. High resolution point clouds from TLS already represent single leaves which can be used for a more precise estimation of Leaf Area Index (LAI) and for higher accurate biomass estimation. However, currently the methodology for extracting single leafs from the unclassified point clouds for individual trees is still missing. The aim of this study is to present a novel segmentation approach in order to extract single leaves and derive features related to leaf morphology (such as area, slope, length and width) of each single leaf from TLS point cloud data. For the study two exemplary single trees were scanned in leaf-on condition on the university campus of Innsbruck during calm wind conditions. A northern red oak (Quercus rubra) was scanned by a discrete return recording Optech ILRIS-3D TLS scanner and a tulip tree (Liliodendron tulpifera) with Riegl VZ-6000 scanner. During the scanning campaign a reference dataset was measured parallel to scanning. In this case 230 leaves were randomly collected around the lower branches of the tree and photos were taken. The developed workflow steps were the following: in the first step normal vectors and eigenvalues were calculated based on the user specified neighborhood. Then using the direction of the largest eigenvalue outliers i.e. ghost points were removed. After that region growing segmentation based on the curvature and angles between normal vectors was applied on the filtered point cloud. On each segment a RANSAC plane fitting algorithm was applied in order to extract the segment based normal vectors. Using the related features of the calculated segments the stem and branches were labeled as non-leaf and other segments were classified as leaf. The validation of the different segmentation parameters was evaluated as the following: i) the sum area of the collected leaves and the point cloud, ii) the segmented leaf length-width ratio iii) the distribution of the leaf area for the segmented and the reference-ones were compared and the ideal parameter-set was found. The results show that the leaves can be captured with the developed workflow and the slope can be determined robustly for the segmented leaves. However, area, length and width values are systematically depending on the angle and the distance from the scanner. For correction of the systematic underestimation, more systematic measurement or LiDAR simulation is required for further detailed analysis. The results of leaf segmentation algorithm show high potential in generating more precise tree models with correctly located leaves in order to extract more precise input model for biological modeling of LAI or atmospheric corrections studies. The presented workflow also can be used in monitoring the change of angle of the leaves due to sun irradiation, water balance, and day-night rhythm.
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NASA Astrophysics Data System (ADS)
Rothmund, Sabrina; Niethammer, Uwe; Walter, Marco; Joswig, Manfred
2013-04-01
In recent years, the high-resolution and multi-temporal 3D mapping of the Earth's surface using terrestrial laser scanning (TLS), ground-based optical images and especially low-cost UAV-based aerial images (Unmanned Aerial Vehicle) has grown in importance. This development resulted from the progressive technical improvement of the imaging systems and the freely available multi-view stereo (MVS) software packages. These different methods of data acquisition for the generation of accurate, high-resolution digital surface models (DSMs) were applied as part of an eight-week field campaign at the Super-Sauze landslide (South French Alps). An area of approximately 10,000 m² with long-term average displacement rates greater than 0.01 m/day has been investigated. The TLS-based point clouds were acquired at different viewpoints with an average point spacing between 10 to 40 mm and at different dates. On these days, more than 50 optical images were taken on points along a predefined line on the side part of the landslide by a low-cost digital compact camera. Additionally, aerial images were taken by a radio-controlled mini quad-rotor UAV equipped with another low-cost digital compact camera. The flight altitude ranged between 20 m and 250 m and produced a corresponding ground resolution between 0.6 cm and 7 cm. DGPS measurements were carried out as well in order to geo-reference and validate the point cloud data. To generate unscaled photogrammetric 3D point clouds from a disordered and tilted image set, we use the widespread open-source software package Bundler and PMVS2 (University of Washington). These multi-temporal DSMs are required on the one hand to determine the three-dimensional surface deformations and on the other hand it will be required for differential correction for orthophoto production. Drawing on the example of the acquired data at the Super-Sauze landslide, we demonstrate the potential but also the limitations of the photogrammetric point clouds. To determine the quality of the photogrammetric point cloud, these point clouds are compared with the TLS-based DSMs. The comparison shows that photogrammetric points accuracies are in the range of cm to dm, therefore don't reach the quality of the high-resolution TLS-based DSMs. Further, the validation of the photogrammetric point clouds reveals that some of them have internal curvature effects. The advantage of the photogrammetric 3D data acquisition is the use of low-cost equipment and less time-consuming data collection in the field. While the accuracy of the photogrammetric point clouds is not as high as TLS-based DSMs, the advantages of the former method are seen when applied in areas where dm-range is sufficient.
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Friedman, B A
2001-08-01
Major forces are now reshaping all businesses on a global basis, including the healthcare and clinical laboratory industries. One of the major forces at work is information technology (IT), which now provides the opportunity to create a new economic and business model for the clinical laboratory industry based on the creation of an integrated vertical meta-network, referred to here as the "total laboratory solution" (TLS). Participants at the most basic level of such a network would include a hospital-based laboratory, a reference laboratory, a laboratory information system/application service provider/laboratory portal vendor, an in vitro diagnostic manufacturer, and a pharmaceutical/biotechnology manufacturer. It is suggested that each of these participants would add value to the network primarily in its area of core competency. Subvariants of such a network have evolved over recent years, but a TLS comprising all or most of these participants does not exist at this time. Although the TLS, enabled by IT and closely akin to the various e-businesses that are now taking shape, offers many advantages from a theoretical perspective over the current laboratory business model, its success will depend largely on (a) market forces, (b) how the collaborative networks are organized and managed, and (c) whether the network can offer healthcare organizations higher quality testing services at lower cost. If the concept is successful, new demands will be placed on hospital-based laboratory professionals to shift the range of professional services that they offer toward clinical consulting, integration of laboratory information from multiple sources, and laboratory information management. These information management and integration tasks can only increase in complexity in the future as new genomic and proteomics testing modalities are developed and come on-line in clinical laboratories.
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Song, In Hye; Heo, Sun-Hee; Bang, Won Seon; Park, Hye Seon; Park, In Ah; Kim, Young-Ae; Park, Suk Young; Roh, Jin; Gong, Gyungyub; Lee, Hee Jin
2017-01-01
Purpose The tertiary lymphoid structure (TLS) is an important source of tumor-infiltrating lymphocytes (TILs), which have a strong prognostic and predictive value in triple-negative breast cancer (TNBC). A previous study reported that the levels of CXCL13 mRNA expression were associated with TLSs, but measuring the gene expression is challenging in routine practice. Therefore, this study evaluated the MECA79-positive high endothelial venule (HEV) densities and their association with the histopathologically assessed TLSs in biopsy samples. In addition, the relationship of TLSs with the CXCL13 transcript levels and clinical outcomes were examined. Materials and Methods A total of 108 TNBC patients treated with neoadjuvant chemotherapy (NAC) were studied. The amounts of TILs and TLSs were measured histopathologically using hematoxylin and eosin–stained slides. The HEV densities and TIL subpopulations were measured by immunohistochemistry for MECA79, CD3, CD8, and CD20. CXCL13mRNA expression levels using a NanoString assay (NanoString Technologies). Results The mean number of HEVs in pre-NAC biopsies was 12 (range, 0 to 72). The amounts of TILs and TLSs, HEV density, and CXCL13 expression showed robust correlations with each other. A lower pre-NAC clinical T stage, higher TIL and TLS levels, a higher HEV density, CD20-positive cell density, and CXCL13 expression were significant predictors of a pathologic complete response (pCR). Higher CD8-positive cell density and levels of CXCL13 expression were significantly associated with a better disease-free survival rate. Conclusion MECA79-positive HEV density in pre-NAC biopsies is an objective and quantitative surrogate marker of TLS and might be a valuable tool for predicting pCR of TNBC in routine pathology practice. PMID:27488875
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A Teaching-Learning Sequence about Weather Map Reading
ERIC Educational Resources Information Center
Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine
2017-01-01
In this paper a teaching-learning sequence (TLS) introducing pre-service elementary teachers (PET) to weather map reading, with emphasis on wind assignment, is presented. The TLS includes activities about recognition of wind symbols, assignment of wind direction and wind speed on a weather map and identification of wind characteristics in a…
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77 FR 39677 - Submission for OMB Review; Comment Request
Federal Register 2010, 2011, 2012, 2013, 2014
2012-07-05
... by law to give an Information Sheet to each person from whom they request special census related... of information under the provisions of the Paperwork Reduction Act (44 U.S.C. chapter 35). Agency: U... information for TLs, to schedule interviews for the TLs, to determine the type of TL, and to estimate the...
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Lesion bypass by S. cerevisiae Pol ζ alone
Stone, Jana E.; Kumar, Dinesh; Binz, Sara K.; Inase, Aki; Iwai, Shigenori; Chabes, Andrei; Burgers, Peter M.; Kunkel, Thomas A.
2011-01-01
DNA polymerase zeta (Pol ζ) participates in translesion synthesis (TLS) of DNA adducts that stall replication fork progression. Previous studies have led to the suggestion that the primary role of Pol ζ in TLS is to extend primers created when another DNA polymerase inserts nucleotides opposite lesions. Here we test the non-exclusive possibility that Pol ζ can sometimes perform TLS in the absence of any other polymerase. To do so, we quantified the efficiency with which S. cerevisiae Pol ζ bypasses abasic sites, cis-syn cyclobutane pyrimidine dimers and (6-4) photoproducts. In reactions containing dNTP concentrations that mimic those induced by DNA damage, a Pol ζ derivative with phenylalanine substituted for leucine 979 at the polymerase active site bypasses all three lesions at efficiencies between 27–73%. Wild-type Pol ζ also bypasses these lesions, with efficiencies that are lower and depend on the sequence context in which the lesion resides. The results are consistent with the hypothesis that, in addition to extending aberrant termini created by other DNA polymerases, Pol ζ has the potential to be the sole DNA polymerase involved in TLS. PMID:21622032
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An ethnographic study of differentiated practice in an operating room.
Graff, C; Roberts, K; Thornton, K
1999-01-01
An ethnographic study was conducted to investigate implementation of the clinical nurse III or team leader (TL) role as part of a newly executed nursing differentiated practice model. The six TLs studied were employed in the operating room (OR). Through participant observation, interviews, and document analysis, the TL role--as well as perceptions of the role by the TLs and OR staff--were studied. Problems related to performance of the role and its evolutionary process were delineated. Data analysis involved identifying categories and subcategories of data and developing a coding system to identify themes. Salient themes were related to the culture of the OR. Because of the OR's highly technical environment, the TLs defined their roles in relation to the organizational and technical needs of their surgical service. Refinement of surgeon "preference cards" and "instrument count sheets" was considered the initial priority for the TLs. Various controllable and uncontrollable factors were identified that affected implementation of the new TL role. Findings suggest that introduction of the role requires insight into setting and an emphasis on staging and orientation of employees to the new role.
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NASA Astrophysics Data System (ADS)
Pérez Ramos, A.; Robleda Prieto, G.
2016-06-01
Indoor Gothic apse provides a complex environment for virtualization using imaging techniques due to its light conditions and architecture. Light entering throw large windows in combination with the apse shape makes difficult to find proper conditions to photo capture for reconstruction purposes. Thus, documentation techniques based on images are usually replaced by scanning techniques inside churches. Nevertheless, the need to use Terrestrial Laser Scanning (TLS) for indoor virtualization means a significant increase in the final surveying cost. So, in most cases, scanning techniques are used to generate dense point clouds. However, many Terrestrial Laser Scanner (TLS) internal cameras are not able to provide colour images or cannot reach the image quality that can be obtained using an external camera. Therefore, external quality images are often used to build high resolution textures of these models. This paper aims to solve the problem posted by virtualizing indoor Gothic churches, making that task more affordable using exclusively techniques base on images. It reviews a previous proposed methodology using a DSRL camera with 18-135 lens commonly used for close range photogrammetry and add another one using a HDR 360° camera with four lenses that makes the task easier and faster in comparison with the previous one. Fieldwork and office-work are simplified. The proposed methodology provides photographs in such a good conditions for building point clouds and textured meshes. Furthermore, the same imaging resources can be used to generate more deliverables without extra time consuming in the field, for instance, immersive virtual tours. In order to verify the usefulness of the method, it has been decided to apply it to the apse since it is considered one of the most complex elements of Gothic churches and it could be extended to the whole building.
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Malhi, Yadvinder; Jackson, Tobias; Patrick Bentley, Lisa; Lau, Alvaro; Shenkin, Alexander; Herold, Martin; Calders, Kim; Bartholomeus, Harm; Disney, Mathias I
2018-04-06
Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do.
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Corral-Jara, Karla F.; Gómez-Leyva, Juan F.; Rosenstein, Yvonne; Jose-Abrego, Alexis; Roman, Sonia
2016-01-01
We recently reported an immune-modulatory role of conjugated bilirubin (CB) in hepatitis A virus (HAV) infection. During this infection the immune response relies on CD4+ T lymphocytes (TLs) and it may be affected by the interaction of HAV with its cellular receptor (HAVCR1/TIM-1) on T cell surface. How CB might affect T cell function during HAV infection remains to be elucidated. Herein, in vitro stimulation of CD4+ TLs from healthy donors with CB resulted in a decrease in the degree of intracellular tyrosine phosphorylation and an increase in the activity of T regulatory cells (Tregs) expressing HAVCR1/TIM-1. A comparison between CD4+ TLs from healthy donors and HAV-infected patients revealed changes in the TCR signaling pathway relative to changes in CB levels. The proportion of CD4+CD25+ TLs increased in patients with low CB serum levels and an increase in the percentage of Tregs expressing HAVCR1/TIM-1 was found in HAV-infected patients relative to controls. A low frequency of 157insMTTTVP insertion in the viral receptor gene HAVCR1/TIM-1 was found in patients and controls. Our data revealed that, during HAV infection, CB differentially regulates CD4+ TLs and Tregs functions by modulating intracellular pathways and by inducing changes in the proportion of Tregs expressing HAVCR1/TIM-1. PMID:27578921
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Ma, Emilie; Veaute, Xavier; Coïc, Eric
2017-01-01
Replicative DNA polymerases cannot insert efficiently nucleotides at sites of base lesions. This function is taken over by specialized translesion DNA synthesis (TLS) polymerases to allow DNA replication completion in the presence of DNA damage. In eukaryotes, Rad6- and Rad18-mediated PCNA ubiquitination at lysine 164 promotes recruitment of TLS polymerases, allowing cells to efficiently cope with DNA damage. However, several studies showed that TLS polymerases can be recruited also in the absence of PCNA ubiquitination. We hypothesized that the stability of the interactions between DNA polymerase δ (Pol δ) subunits and/or between Pol δ and PCNA at the primer/template junction is a crucial factor to determine the requirement of PCNA ubiquitination. To test this hypothesis, we used a structural mutant of Pol δ in which the interaction between Pol3 and Pol31 is inhibited. We found that in yeast, rad18Δ-associated UV hypersensitivity is suppressed by pol3-ct, a mutant allele of the POL3 gene that encodes the catalytic subunit of replicative Pol δ. pol3-ct suppressor effect was specifically dependent on the Rev1 and Pol ζ TLS polymerases. This result strongly suggests that TLS polymerases could rely much less on PCNA ubiquitination when Pol δ interaction with PCNA is partially compromised by mutations. In agreement with this model, we found that the pol3-FI allele suppressed rad18Δ-associated UV sensitivity as observed for pol3-ct. This POL3 allele carries mutations within a putative PCNA Interacting Peptide (PIP) motif. We then provided molecular and genetic evidence that this motif could contribute to Pol δ-PCNA interaction indirectly, although it is not a bona fide PIP. Overall, our results suggest that the primary role of PCNA ubiquitination is to allow TLS polymerases to outcompete Pol δ for PCNA access upon DNA damage. PMID:29281621
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Feucht, Matthias J; Grande, Eduardo; Brunhuber, Johannes; Burgkart, Rainer; Imhoff, Andreas B; Braun, Sepp
2013-12-01
A tear of the posterior medial meniscus root (PMMR) is increasingly recognized as a serious knee joint injury. Several suture techniques for arthroscopic transtibial pull-out repair have been described; however, only limited data about the biomechanical properties of these techniques are currently available. There are significant differences between the tested suture techniques, with more complex suture configurations providing superior biomechanical properties. Controlled laboratory study. A total of 40 porcine medial menisci were randomly assigned to 1 of 4 groups (10 specimens each) according to suture technique: two simple stitches (TSS), horizontal mattress suture (HMS), modified Mason-Allen suture (MMA), and two modified loop stitches (TLS). Meniscus-suture constructs were subjected to cyclic loading followed by load-to-failure testing in a servohydraulic material testing machine. During cyclic loading, the HMS and TLS groups showed a significantly higher displacement after 100, 500, and 1000 cycles compared with the TSS and MMA groups. After 1000 cycles, the highest displacement was found for the TLS group, with significant differences compared with all other groups. During load-to-failure testing, the highest maximum load and yield load were observed for the MMA group, with statistically significant differences compared with the TSS and TLS groups. With regard to stiffness, the TSS and MMA groups showed significantly higher values compared with the HMS and TLS groups. The MMA technique provided the best biomechanical properties with regard to cyclic loading and load-to-failure testing. The TSS technique seems to be a valuable alternative. Both the HMS and TLS techniques have the disadvantage of lower stiffness and higher displacement during cyclic loading. Using a MMA technique may improve healing rates and avoid progressive extrusion of the medial meniscus after transtibial pull-out repair of PMMR tears. The TSS technique may be used as an alternative that is easier to perform, but a more careful rehabilitation program is possibly necessary to avoid early failure.
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NASA Astrophysics Data System (ADS)
Smit, Yvonne; Donker, Jasper; Ruessink, Gerben
2016-04-01
Coastal sand dunes provide essential protection against marine flooding. Consequently, dune erosion during severe storms has been studied intensively, resulting in well-developed erosion models for use in scientific and applied projects. Nowadays there is growing awareness that similarly advanced knowledge on dune recovery and growth is needed to predict future dune development. For this reason, aeolian sand transport from the beach into the dunes has to be investigated thoroughly. Surface moisture is a major factor limiting aeolian transport on sandy beaches. By increasing the velocity threshold for sediment entrainment, pick-up rates reduce and the fetch length increases. Conventional measurement techniques cannot adequately characterize the spatial and temporal distribution of surface moisture content required to study the effects on aeolian transport. Here we present a new method for detecting surface moisture at high temporal and spatial resolution using the RIEGL VZ-400 terrestrial laser scanner (TLS). Because this TLS operates at a wavelength near a water absorption band (1550 nm), TLS reflectance is an accurate parameter to measure surface soil moisture over its full range. Three days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Gravimetric soil moisture samples were used to calibrate the relation between reflectance and surface moisture. Results reveal a robust negative relation for the full range of possible surface moisture contents (0% - 25%). This relation holds to about 80 m from the TLS. Within this distance the TLS typically produces O(106-107) data points, which we averaged into soil moisture maps with a 0.25x0.25 m resolution. This grid size largely removes small moisture disturbances induced by, for example, footprints or tire tracks, while retaining larger scale trends. As the next step in our research, we will analyze the obtained maps to determine which processes affect the spatial and temporal surface-moisture variability.
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Estimating small-scale roughness of a rock joint using TLS data
NASA Astrophysics Data System (ADS)
Bitenc, Maja; Kieffer, D. Scott; Khoshelham, Kourosh
2016-04-01
Roughness of a rock joint is an important parameter influencing rock mass stability. Besides the surface amplitude, also the roughness direction- and scale-dependency should be observed (i.e. 3D roughness). Up to now most of roughness measurements and parameters rely on point or profile data obtained on small samples, mostly in a laboratory. State-of-the-art remote sensing technologies supply 3D measurements of an in-situ rock surface and therefore enable a 3D roughness parameterization. Detailed morphology of a remote large-scale vertical structure can be best observed by Terrestrial Laser Scanning (TLS). In a short time and from distances of a few hundred meters, TLS provides relatively dense and precise point cloud. Sturzenegger and Stead [2009] showed that the TLS technology and careful fieldwork allow the extraction of first-order roughness profiles, i.e. the surface irregularities with a wavelength greater than about 10 cm. Our goal is to find the lower limit; this is, to define the smallest discernible detail, and appropriate measuring and processing steps to extract this detail from the TLS data. The smallest observable roughness amplitude depends on the TLS data precision, which is limited mostly by an inherent range error (noise). An influence of the TLS noise on the rock joint roughness was analyzed using highly precise reference data acquired by Advanced TOpometric Sensor (ATOS) on a 20x30 cm rock joint sample. ATOS data were interpolated into 1 mm grid, to which five levels (0.5, 1, 1.5, 2, 2.5 mm) of normally distributed noise were added. The 3D surfaces entered direction-dependent roughness parameter computation after Grasselli [2001]. Average roughness of noisy surfaces logarithmically increase with the noise level and is already doubled for 1 mm noise. Performing Monte Carlo simulation roughness parameter noise sensitivity was investigated. Distribution of roughness differences (roughness of noisy surfaces minus roughness of reference ATOS surface) is approximately normal. Standard deviation of differences on average slightly increases with the noise level, but is strongly dependent on the analysis direction. As proved by different researches within the field of signal, image and also TLS data processing, noise can be, to a certain extent, removed by a post-processing step called denoising. In this research, four denoising methods, namely discrete WT (DWT) and stationary WT (SWT), and classic NLM (NLM) and probabilistic NLM (PNLM), were used on noisy ATOS data. Results were compared based on the (i) height and (ii) roughness differences between denoised surfaces and reference ATOS surface, (iii) the peak signal-to-noise ratio (PSNR) and (iv) the visual check of denoised surface. Increased PSNRs and reduced roughness differences prove the importance of the TLS data denoising procedure. In case of SWT, NLM and PNLM the surface is mostly over smoothed, whereas in case of DWT some noise remains. References: - Grasselli, G. (2001). Shear strength of rock joints based on quantified surface description. École Polytechnique Fédérale de Lausanne. Lausanne, EPFL. - Sturzenegger, M. and D. Stead (2009). "Close-range terrestrial digital photogrammetry and terrestrial laser scanning for discontinuity characterization on rock cuts." Engineering Geology 106(3-4): 163-182.
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ERIC Educational Resources Information Center
Nicholson, Julie; Capitelli, Sarah; Richert, Anna E.; Wilson, Carrie; Bove, Claire
2017-01-01
We examine how teacher leaders (TLs), working in a low-income urban elementary school, supported their colleagues to learn how to collect quality formative data and to discuss it in collaborative conversations in order to make their students' learning visible. The TLs faced challenges reflecting consequences resulting from the district's high…
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Lu, Xiaoqi; Wang, Lei; Zhao, Jianfeng
2012-02-01
With the development of medical information, Picture Archiving and Communications System (PACS), Hospital Information System/Radiology Information System(HIS/RIS) and other medical information management system become popular and developed, and interoperability between these systems becomes more frequent. So, these enclosed systems will be open and regionalized by means of network, and this is inevitable. If the trend becomes true, the security of information transmission may be the first problem to be solved. Based on the need for network security, we investigated the Digital Imaging and Communications in Medicine (DICOM) Standard and Transport Layer Security (TLS) Protocol, and implemented the TLS transmission of the DICOM medical information with OpenSSL toolkit and DCMTK toolkit.
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Optimal state transfer of a single dissipative two-level system
NASA Astrophysics Data System (ADS)
Jirari, Hamza; Wu, Ning
2016-04-01
Optimal state transfer of a single two-level system (TLS) coupled to an Ohmic boson bath via off-diagonal TLS-bath coupling is studied by using optimal control theory. In the weak system-bath coupling regime where the time-dependent Bloch-Redfield formalism is applicable, we obtain the Bloch equation to probe the evolution of the dissipative TLS in the presence of a time-dependent external control field. By using the automatic differentiation technique to compute the gradient for the cost functional, we calculate the optimal transfer integral profile that can achieve an ideal transfer within a dimer system in the Fenna-Matthews-Olson (FMO) model. The robustness of the control profile against temperature variation is also analyzed.
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NASA Astrophysics Data System (ADS)
Rizzo, D.; Hamshaw, S. D.; Dewoolkar, M.; ONeil-Dunne, J.; Frolik, J.; Bryce, T. G.; Waldron, A. Y.
2015-12-01
Streambank erosion is a common non-point source contributing to suspended sediment and nutrient loading of waterways, and recently has been estimated to account for 30-80% of sediment loading into receiving waters. There is interest in developing reliable methods to quantify bank erosion in watersheds, so effective management strategies can be devised. However, current methods can be either cost prohibitive or unreliable. Direct measurement approaches (surveys and erosion pins) are labor intensive and yield site-specific measurements that are limited for extrapolation to larger scales. Similar issues arise with analytical methods such as slope stability analysis, which require material parameters that are resource intensive to determine. Newer approaches such as use of aerial LiDAR data have proved effective for watershed level assessment, but come with long turnaround times and high cost. Terrestrial laser scanning (TLS) is also effective and offers high accuracy, however collection over large areas is impractical and post-processing is labor intensive. New technology in the form of unmanned aerial systems (UAS) has the potential to significantly enhance the ability to monitor channel migration and quantify bank erosion at variable scales. In this study, 20 km of the Mad and Winooski Rivers in Vermont were flown using a senseFly eBee UAS. Flights were made in spring and fall 2015 in leaf-off conditions with selected portions also flown after large storms in the summer. Change in bank profiles between spring and fall flights provide a comprehensive estimate of bank erosion along the study reaches. Six sites with varying bank heights, erosion sensitivity, and vegetation conditions were selected for simultaneous surveying using a TLS. Point cloud data from both the TLS and UAS were compared to assess the accuracy of the UAS for capturing the bank profile. Changes in bank cross-sections and in volumes calculated from 3D digital surface models were used to compare the UAS and TLS methods. Ascertaining the accuracy of UAS in measuring streambank profiles will determine the appropriateness of the technology for long-term monitoring of bank erosion. The ability for rapid deployment, covering large areas, and fast post-processing allow for more comprehensive monitoring of streambank erosion in river systems.
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Low upper limit to methane abundance on Mars.
Webster, Christopher R; Mahaffy, Paul R; Atreya, Sushil K; Flesch, Gregory J; Farley, Kenneth A
2013-10-18
By analogy with Earth, methane in the Martian atmosphere is a potential signature of ongoing or past biological activity. During the past decade, Earth-based telescopic observations reported "plumes" of methane of tens of parts per billion by volume (ppbv), and those from Mars orbit showed localized patches, prompting speculation of sources from subsurface bacteria or nonbiological sources. From in situ measurements made with the Tunable Laser Spectrometer (TLS) on Curiosity using a distinctive spectral pattern specific to methane, we report no detection of atmospheric methane with a measured value of 0.18 ± 0.67 ppbv corresponding to an upper limit of only 1.3 ppbv (95% confidence level), which reduces the probability of current methanogenic microbial activity on Mars and limits the recent contribution from extraplanetary and geologic sources.
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Dissipation of turbulence in the wake of a wind turbine
DOE Office of Scientific and Technical Information (OSTI.GOV)
Lundquist, J. K.; Bariteau, L.
The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-ratemore » turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters D downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Furthermore. comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.« less
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Dissipation of Turbulence in the Wake of a Wind Turbine
NASA Astrophysics Data System (ADS)
Lundquist, J. K.; Bariteau, L.
2015-02-01
The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-rate turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.
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Dissipation of turbulence in the wake of a wind turbine
Lundquist, J. K.; Bariteau, L.
2014-11-06
The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-ratemore » turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters D downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Furthermore. comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.« less
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A warming tropical central Pacific dries the lower stratosphere
NASA Astrophysics Data System (ADS)
Ding, Qinghua; Fu, Qiang
2018-04-01
The amount of water vapor in the tropical lower stratosphere (TLS), which has an important influence on the radiative energy budget of the climate system, is modulated by the temperature variability of the tropical tropopause layer (TTL). The TTL temperature variability is caused by a complex combination of the stratospheric quasi-biennial oscillation (QBO), tropospheric convective processes in the tropics, and the Brewer-Dobson circulation (BDC) driven by mid-latitude and subtropical atmospheric waves. In 2000, the TLS water vapor amount exhibited a stepwise transition to a dry phase, apparently caused by a change in the BDC. In this study, we present observational and modeling evidence that the epochal change of water vapor between the periods of 1992-2000 and 2001-2005 was also partly caused by a concurrent sea surface temperature (SST) warming in the tropical central Pacific. This SST warming cools the TTL above by enhancing the equatorial wave-induced upward motion near the tropopause, which consequently reduces the amount of water vapor entering the stratosphere. The QBO affects the TLS water vapor primarily on inter-annual timescales, whereas a classical El Niño southern oscillation (ENSO) event has small effect on tropical mean TLS water vapor because its responses are longitudinally out of phase. This study suggests that the tropical central Pacific SST is another driver of TLS water vapor variability on inter-decadal timescales and the tropical SST changes could contribute to about 30% of the step-wise drop of the lower stratospheric water vapor from 1992-2000 to 2001-2005.
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Geo-Mechanical Characterization of Carbonate Rock Masses by Means of Laser Scanner Technique
NASA Astrophysics Data System (ADS)
Palma, Biagio; Parise, Mario; Ruocco, Anna
2017-12-01
Knowledge of the geometrical and structural setting of rock masses is crucial to evaluate the stability and to design the most suitable stabilization works. In this work we use the Terrestrial Laser Scanning (TLS) at the site of the Grave of the Castellana Caves, a famous show cave in southern Italy. The Grave is the natural access to the cave system, produced by collapse of the vault, due to upward progression of instabilities in the carbonate rock masses. It is about 55-m high, bell-shaped, with maximum width of 120 m. Aim of the work is the characterization of carbonate rock masses from the structural and geo-mechanical standpoints through the use of innovative survey techniques. TLS survey provides a product consisting of millions of geo-referenced points, to be managed in space, to become a suitable database for the morphological and geological-structural analysis. Studying by means of TLS a rock face, partly inaccessible or located in very complex environments, allows to investigate slopes in their overall areal extent, thus offering advantages both as regards safety of the workers and time needed for the survey. In addition to TLS, the traditional approach was also followed by performing scanlines surveys along the rims of the Grave, following the ISRM recommendations for characterization of discontinuity in rock masses. A quantitative comparison among the data obtained by TLS technique and those deriving from the classical geo-mechanical survey is eventually presented, to discuss potentiality of drawbacks of the different techniques used for surveying the rock masses.
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A Lightweight Protocol for Secure Video Streaming
Morkevicius, Nerijus; Bagdonas, Kazimieras
2018-01-01
The Internet of Things (IoT) introduces many new challenges which cannot be solved using traditional cloud and host computing models. A new architecture known as fog computing is emerging to address these technological and security gaps. Traditional security paradigms focused on providing perimeter-based protections and client/server point to point protocols (e.g., Transport Layer Security (TLS)) are no longer the best choices for addressing new security challenges in fog computing end devices, where energy and computational resources are limited. In this paper, we present a lightweight secure streaming protocol for the fog computing “Fog Node-End Device” layer. This protocol is lightweight, connectionless, supports broadcast and multicast operations, and is able to provide data source authentication, data integrity, and confidentiality. The protocol is based on simple and energy efficient cryptographic methods, such as Hash Message Authentication Codes (HMAC) and symmetrical ciphers, and uses modified User Datagram Protocol (UDP) packets to embed authentication data into streaming data. Data redundancy could be added to improve reliability in lossy networks. The experimental results summarized in this paper confirm that the proposed method efficiently uses energy and computational resources and at the same time provides security properties on par with the Datagram TLS (DTLS) standard. PMID:29757988
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A Lightweight Protocol for Secure Video Streaming.
Venčkauskas, Algimantas; Morkevicius, Nerijus; Bagdonas, Kazimieras; Damaševičius, Robertas; Maskeliūnas, Rytis
2018-05-14
The Internet of Things (IoT) introduces many new challenges which cannot be solved using traditional cloud and host computing models. A new architecture known as fog computing is emerging to address these technological and security gaps. Traditional security paradigms focused on providing perimeter-based protections and client/server point to point protocols (e.g., Transport Layer Security (TLS)) are no longer the best choices for addressing new security challenges in fog computing end devices, where energy and computational resources are limited. In this paper, we present a lightweight secure streaming protocol for the fog computing "Fog Node-End Device" layer. This protocol is lightweight, connectionless, supports broadcast and multicast operations, and is able to provide data source authentication, data integrity, and confidentiality. The protocol is based on simple and energy efficient cryptographic methods, such as Hash Message Authentication Codes (HMAC) and symmetrical ciphers, and uses modified User Datagram Protocol (UDP) packets to embed authentication data into streaming data. Data redundancy could be added to improve reliability in lossy networks. The experimental results summarized in this paper confirm that the proposed method efficiently uses energy and computational resources and at the same time provides security properties on par with the Datagram TLS (DTLS) standard.
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Using History and Philosophy of Science to Promote Students' Argumentation
ERIC Educational Resources Information Center
Archila, Pablo Antonio
2015-01-01
This article describes the effect of a teaching-learning sequence (TLS) based on the discovery of oxygen in promoting students' argumentation. It examines the written and oral arguments produced by 63 high school students (24 females and 39 males, 16-17 years old) in France during a complete TLS supervised by the same teacher. The data used in…
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Federal Register 2010, 2011, 2012, 2013, 2014
2011-02-15
... inspection AD 97-17-04R1, and to allow automatic eddy current inspection per engine manual Section 72-33-31.... That AD currently requires revisions to the engine manufacturer's time limits section (TLS) to include... modifies the TLS of the manufacturer's engine manual and an air carrier's approved continuous airworthiness...
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DNA lesion identity drives choice of damage tolerance pathway in murine cell chromosomes.
Cohen, Isadora S; Bar, Carmit; Paz-Elizur, Tamar; Ainbinder, Elena; Leopold, Karoline; de Wind, Niels; Geacintov, Nicholas; Livneh, Zvi
2015-02-18
DNA-damage tolerance (DDT) via translesion DNA synthesis (TLS) or homology-dependent repair (HDR) functions to bypass DNA lesions encountered during replication, and is critical for maintaining genome stability. Here, we present piggyBlock, a new chromosomal assay that, using piggyBac transposition of DNA containing a known lesion, measures the division of labor between the two DDT pathways. We show that in the absence of DNA damage response, tolerance of the most common sunlight-induced DNA lesion, TT-CPD, is achieved by TLS in mouse embryo fibroblasts. Meanwhile, BP-G, a major smoke-induced DNA lesion, is bypassed primarily by HDR, providing the first evidence for this mechanism being the main tolerance pathway for a biologically important lesion in a mammalian genome. We also show that, far from being a last-resort strategy as it is sometimes portrayed, TLS operates alongside nucleotide excision repair, handling 40% of TT-CPDs in repair-proficient cells. Finally, DDT acts in mouse embryonic stem cells, exhibiting the same pattern—mutagenic TLS included—despite the risk of propagating mutations along all cell lineages. The new method highlights the importance of HDR, and provides an effective tool for studying DDT in mammalian cells.
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DNA lesion identity drives choice of damage tolerance pathway in murine cell chromosomes
Cohen, Isadora S.; Bar, Carmit; Paz-Elizur, Tamar; Ainbinder, Elena; Leopold, Karoline; de Wind, Niels; Geacintov, Nicholas; Livneh, Zvi
2015-01-01
DNA-damage tolerance (DDT) via translesion DNA synthesis (TLS) or homology-dependent repair (HDR) functions to bypass DNA lesions encountered during replication, and is critical for maintaining genome stability. Here, we present piggyBlock, a new chromosomal assay that, using piggyBac transposition of DNA containing a known lesion, measures the division of labor between the two DDT pathways. We show that in the absence of DNA damage response, tolerance of the most common sunlight-induced DNA lesion, TT-CPD, is achieved by TLS in mouse embryo fibroblasts. Meanwhile, BP-G, a major smoke-induced DNA lesion, is bypassed primarily by HDR, providing the first evidence for this mechanism being the main tolerance pathway for a biologically important lesion in a mammalian genome. We also show that, far from being a last-resort strategy as it is sometimes portrayed, TLS operates alongside nucleotide excision repair, handling 40% of TT-CPDs in repair-proficient cells. Finally, DDT acts in mouse embryonic stem cells, exhibiting the same pattern—mutagenic TLS included—despite the risk of propagating mutations along all cell lineages. The new method highlights the importance of HDR, and provides an effective tool for studying DDT in mammalian cells. PMID:25589543
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The effect of short ground vegetation on terrestrial laser scans at a local scale
NASA Astrophysics Data System (ADS)
Fan, Lei; Powrie, William; Smethurst, Joel; Atkinson, Peter M.; Einstein, Herbert
2014-09-01
Terrestrial laser scanning (TLS) can record a large amount of accurate topographical information with a high spatial accuracy over a relatively short period of time. These features suggest it is a useful tool for topographical survey and surface deformation detection. However, the use of TLS to survey a terrain surface is still challenging in the presence of dense ground vegetation. The bare ground surface may not be illuminated due to signal occlusion caused by vegetation. This paper investigates vegetation-induced elevation error in TLS surveys at a local scale and its spatial pattern. An open, relatively flat area vegetated with dense grass was surveyed repeatedly under several scan conditions. A total station was used to establish an accurate representation of the bare ground surface. Local-highest-point and local-lowest-point filters were applied to the point clouds acquired for deriving vegetation height and vegetation-induced elevation error, respectively. The effects of various factors (for example, vegetation height, edge effects, incidence angle, scan resolution and location) on the error caused by vegetation are discussed. The results are of use in the planning and interpretation of TLS surveys of vegetated areas.
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Uncertainty in multispectral lidar signals caused by incidence angle effects
Nevalainen, Olli; Hakala, Teemu; Kaasalainen, Mikko
2018-01-01
Multispectral terrestrial laser scanning (TLS) is an emerging technology. Several manufacturers already offer commercial dual or three wavelength airborne laser scanners, while multispectral TLS is still carried out mainly with research instruments. Many of these research efforts have focused on the study of vegetation. The aim of this paper is to study the uncertainty of the measurement of spectral indices of vegetation with multispectral lidar. Using two spectral indices as examples, we find that the uncertainty is due to systematic errors caused by the wavelength dependency of laser incidence angle effects. This finding is empirical, and the error cannot be removed by modelling or instrument modification. The discovery and study of these effects has been enabled by hyperspectral and multispectral TLS, and it has become a subject of active research within the past few years. We summarize the most recent studies on multi-wavelength incidence angle effects and present new results on the effect of specular reflection from the leaf surface, and the surface structure, which have been suggested to play a key role. We also discuss the consequences to the measurement of spectral indices with multispectral TLS, and a possible correction scheme using a synthetic laser footprint. PMID:29503718
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Pairwise registration of TLS point clouds using covariance descriptors and a non-cooperative game
NASA Astrophysics Data System (ADS)
Zai, Dawei; Li, Jonathan; Guo, Yulan; Cheng, Ming; Huang, Pengdi; Cao, Xiaofei; Wang, Cheng
2017-12-01
It is challenging to automatically register TLS point clouds with noise, outliers and varying overlap. In this paper, we propose a new method for pairwise registration of TLS point clouds. We first generate covariance matrix descriptors with an adaptive neighborhood size from point clouds to find candidate correspondences, we then construct a non-cooperative game to isolate mutual compatible correspondences, which are considered as true positives. The method was tested on three models acquired by two different TLS systems. Experimental results demonstrate that our proposed adaptive covariance (ACOV) descriptor is invariant to rigid transformation and robust to noise and varying resolutions. The average registration errors achieved on three models are 0.46 cm, 0.32 cm and 1.73 cm, respectively. The computational times cost on these models are about 288 s, 184 s and 903 s, respectively. Besides, our registration framework using ACOV descriptors and a game theoretic method is superior to the state-of-the-art methods in terms of both registration error and computational time. The experiment on a large outdoor scene further demonstrates the feasibility and effectiveness of our proposed pairwise registration framework.
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PCNA mono-ubiquitination and activation of translesion DNA polymerases by DNA polymerase {alpha}.
Suzuki, Motoshi; Niimi, Atsuko; Limsirichaikul, Siripan; Tomida, Shuta; Miao Huang, Qin; Izuta, Shunji; Usukura, Jiro; Itoh, Yasutomo; Hishida, Takashi; Akashi, Tomohiro; Nakagawa, Yoshiyuki; Kikuchi, Akihiko; Pavlov, Youri; Murate, Takashi; Takahashi, Takashi
2009-07-01
Translesion DNA synthesis (TLS) involves PCNA mono-ubiquitination and TLS DNA polymerases (pols). Recent evidence has shown that the mono-ubiquitination is induced not only by DNA damage but also by other factors that induce stalling of the DNA replication fork. We studied the effect of spontaneous DNA replication errors on PCNA mono-ubiquitination and TLS induction. In the pol1L868F strain, which expressed an error-prone pol alpha, PCNA was spontaneously mono-ubiquitinated. Pol alpha L868F had a rate-limiting step at the extension from mismatched primer termini. Electron microscopic observation showed the accumulation of a single-stranded region at the DNA replication fork in yeast cells. For pol alpha errors, pol zeta participated in a generation of +1 frameshifts. Furthermore, in the pol1L868F strain, UV-induced mutations were lower than in the wild-type and a pol delta mutant strain (pol3-5DV), and deletion of the RAD30 gene (pol eta) suppressed this defect. These data suggest that nucleotide misincorporation by pol alpha induces exposure of single-stranded DNA, PCNA mono-ubiquitination and activates TLS pols.
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ERIC Educational Resources Information Center
Savinainen, Antti; Mäkynen, Asko; Nieminen, Pasi; Viiri, Jouni
2017-01-01
This paper presents a research-based teaching-learning sequence (TLS) that focuses on the notion of interaction in teaching Newton's third law (N3 law) which is, as earlier studies have shown, a challenging topic for students to learn. The TLS made systematic use of a visual representation tool--an interaction diagram (ID)--highlighting…
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SSO - Single-Sign-On Profile: Authentication Mechanisms Version 2.0
NASA Astrophysics Data System (ADS)
Taffoni, Giuliano; Schaaf, André; Rixon, Guy; Major, Brian; Taffoni, Giuliano
2017-05-01
Approved client-server authentication mechanisms are described for the IVOA single-sign-on profile: No Authentication; HTTP Basic Authentication; TLS with passwords; TLS with client certificates; Cookies; Open Authentication; Security Assertion Markup Language; OpenID. Normative rules are given for the implementation of these mechanisms, mainly by reference to pre-existing standards. The Authorization mechanisms are out of the scope of this document.
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NASA Astrophysics Data System (ADS)
Piermattei, Livia; Carturan, Luca; Calligaro, Simone; Blasone, Giacomo; Guarnieri, Alberto; Tarolli, Paolo; Dalla Fontana, Giancarlo; Vettore, Antonio
2014-05-01
Digital elevation models (DEMs) of glaciated terrain are commonly used to measure changes in geometry and hence infer the mass balance of glaciers. Different tools and methods exist to obtain information about the 3D geometry of terrain. Recent improvements on the quality and performance of digital cameras for close-range photogrammetry, and the development of automatic digital photogrammetric processing makes the 'structure from motion' photogrammetric technique (SfM) competitive for high quality 3D models production, compared to efficient but also expensive and logistically-demanding survey technologies such as airborn and terrestrial laser scanner (TLS). The purpose of this work is to test the SfM approach, using a consumer-grade SLR camera and the low-cost computer vision-based software package Agisoft Photoscan (Agisoft LLC), to monitor the mass balance of Montasio Occidentale glacier, a 0.07km2, low-altitude, debris-covered glacier located in the Eastern Italian Alps. The quality of the 3D models produced by the SfM process has been assessed by comparison with digital terrain models obtained through TLS surveys carried out at the same dates. TLS technique has indeed proved to be very effective in determining the volume change of this glacier in the last years. Our results shows that the photogrammetric approach can produce point cloud densities comparable to those derived from TLS measurements. Furthermore, the horizontal and vertical accuracies are also of the same order of magnitude as for TLS (centimetric to decimetric). The effect of different landscape characteristics (e.g. distance from the camera or terrain gradient) and of different substrata (rock, debris, ice, snow and firn) was also evaluated in terms of SfM reconstruction's accuracy vs. TLS. Given the good results obtained on the Montasio Occidentale glacier, it can be concluded that the terrestrial photogrammetry, with the advantageous features of portability, ease of use and above all low costs, allows to obtain high-resolution DEMs which enable good mass balance estimations on glaciers with similar characteristics.
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NASA Astrophysics Data System (ADS)
Phinn, S. R.; Armston, J.; Scarth, P.; Johansen, K.; Schaefer, M.; Suarez, L.; Soto-Berelov, M.; Muir, J.; Woodgate, W.; Jones, S.; Held, A. A.
2015-12-01
Vegetation structural information is critical for environmental monitoring, management and compliance assessment. In this context we refer to vegetation structural properties as vertical, horizontal and volumetric dimensions, including: canopy height; amount and distribution of vegetation by height; foliage projective cover (FPC); leaf area index (LAI); and above ground biomass. Our aim was to determine if there were significant differences between vegetation structural properties across 11 ecosystem types in Australia as measured by terrestrial laser scanner (TLS) structure metrics. The ecosystems sampled included: mesophyll vineforest, wet-dry tropical savannah, mallee woodland, subtropical eucalypt forest, mulga woodland/grassland, wet eucalypt forest, dry eucalypt forest, tall and wet eucalypt forest, and desert grassland/shrublands. Canopy height, plant area-height profiles and LAI were calculated from consistently processed TLS data using Australia's Terrestrial Ecosystem Research Network's (TERN) Supersites by the TERN AusCover remote sensing field teams from 2012-2015. The Supersites were sampled using standardised field protocols within a core set of 1 ha plots as part of a 5 km x 5 km uniform area using a RIEGL-VZ400 waveform recording TLS. Four to seven scans were completed per plot, with one centre point and then at 25 m away from the centre point along transect lines at 0o, 60o and 240o. Individual foliage profiles were sensitive to spatial variation in the distribution of plant materials. Significant differences were visible between each of the vegetation communities assessed when aggregated to plot and ecosystem type scales. Several of the communities exhibited simple profiles with either grass and shrubs (e.g. desert grassland) or grass and trees (e.g. mallee woodland). Others had multiple vegetation forms at different heights, contributing to the profile (e.g. wet eucalypt forest). The TLS data provide significantly more detail about the relative vertical and horizontal distribution of plant materials. TLS data are providing a step change in satellite image based vegetation mapping, and refining our knowledge of vegetation structure and its phenological variability. Open access plot scale TLS measurements are available through the TERN Auscover data portal.
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Lerner, Leticia K; Francisco, Guilherme; Soltys, Daniela T; Rocha, Clarissa R R; Quinet, Annabel; Vessoni, Alexandre T; Castro, Ligia P; David, Taynah I P; Bustos, Silvina O; Strauss, Bryan E; Gottifredi, Vanesa; Stary, Anne; Sarasin, Alain; Chammas, Roger; Menck, Carlos F M
2017-02-17
Genome lesions trigger biological responses that help cells manage damaged DNA, improving cell survival. Pol eta is a translesion synthesis (TLS) polymerase that bypasses lesions that block replicative polymerases, avoiding continued stalling of replication forks, which could lead to cell death. p53 also plays an important role in preventing cell death after ultraviolet (UV) light exposure. Intriguingly, we show that p53 does so by favoring translesion DNA synthesis by pol eta. In fact, the p53-dependent induction of pol eta in normal and DNA repair-deficient XP-C human cells after UV exposure has a protective effect on cell survival after challenging UV exposures, which was absent in p53- and Pol H-silenced cells. Viability increase was associated with improved elongation of nascent DNA, indicating the protective effect was due to more efficient lesion bypass by pol eta. This protection was observed in cells proficient or deficient in nucleotide excision repair, suggesting that, from a cell survival perspective, proper bypass of DNA damage can be as relevant as removal. These results indicate p53 controls the induction of pol eta in DNA damaged human cells, resulting in improved TLS and enhancing cell tolerance to DNA damage, which parallels SOS responses in bacteria. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.
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Hill, David G.; Yu, Liang; Gao, Hugh; Balic, Jesse J.; West, Alison; Oshima, Hiroko; McLeod, Louise; Oshima, Masanobu; Gallimore, Awen; D'Costa, Kimberley; Bhathal, Prithi S.; Sievert, William; Ferrero, Richard L.
2018-01-01
Tertiary lymphoid structures (TLSs) display phenotypic and functional characteristics of secondary lymphoid organs, and often develop in tissues affected by chronic inflammation, as well as in certain inflammation‐associated cancers where they are prognostic of improved patient survival. However, the mechanisms that govern the development of tumour‐associated TLSs remain ill‐defined. Here, we observed tumour‐associated TLSs in a preclinical mouse model (gp130 F/F) of gastric cancer, where tumourigenesis is dependent on hyperactive STAT3 signalling through the common IL‐6 family signalling receptor, gp130. Gastric tumourigenesis was associated with the development of B and T cell‐rich submucosal lymphoid aggregates, containing CD21+ cellular networks and high endothelial venules. Temporally, TLS formation coincided with the development of gastric adenomas and induction of homeostatic chemokines including Cxcl13, Ccl19 and Ccl21. Reflecting the requirement of gp130‐driven STAT3 signalling for gastric tumourigenesis, submucosal TLS development was also STAT3‐dependent, but independent of the cytokine IL‐17 which has been linked with lymphoid neogenesis in chronic inflammation and autoimmunity. Interestingly, upregulated lymphoid chemokine expression and TLS formation were also observed in a chronic gastritis model induced by Helicobacter felis infection. Tumour‐associated TLSs were also observed in patients with intestinal‐type gastric cancer, and a gene signature linked with TLS development in gp130 F/F mice was associated with advanced clinical disease, but was not prognostic of patient survival. Collectively, our in vivo data reveal that hyperactive gp130‐STAT3 signalling closely links gastric tumourigenesis with lymphoid neogenesis, and while a TLS gene signature was associated with advanced gastric cancer in patients, it did not indicate a favourable prognosis. PMID:29417587
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Quality assessment of the TLS data in conservation of monuments
NASA Astrophysics Data System (ADS)
Markiewicz, Jakub S.; Zawieska, Dorota
2015-06-01
Laser scanning has been recently confirming its high potential in the field of acquiring 3D data for architectural and engineering objects. The objective of this paper is to analyse the quality of the TLS data acquired for different surfaces of monumental objects, with consideration of distances and the scanning angles. Tests concerning the quality of the survey data and shapes of architectural objects, characterised by diversified curvature, structure and the uniformity of the surface, were performed. The obtained results proved that utilisation of terrestrial laser scanning techniques does not allow to achieve expected accuracy for some historical surfaces and it should be substituted by alternative, photogrammetric techniques. Therefore, the typology of constructions of historical objects is important not only for selection of the optimum technique of surveys, but also for its appropriate utilisation. The test objects were architectural details of the Main Hall of the Warsaw University of Technology. Scans were acquired using the 5006h scanner. Diversified geometry of scans was tested, and the relations between the distance and obtained accuracy were specified. In the case of numerous conservational works the precise surface reconstruction is often important, in order to specify damages. Therefore, the repeatability of obtained TLS results for selected surfaces was also tested. Different surfaces were analysed, which are composed of different materials having glittery elements and inhomogeneous structure. The obtained results and performed analyses revealed the high imperfections of the TLS technique applied for measuring surfaces of historical objects. The presented accuracy of measurements of projection of historical surfaces, obtained using the TLS technique may be applied by art conservators, museum professionals, archaeologists and other specialists, to perform wide analyses of historical heritage objects.
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Integration of Point Clouds Dataset from Different Sensors
NASA Astrophysics Data System (ADS)
Abdullah, C. K. A. F. Che Ku; Baharuddin, N. Z. S.; Ariff, M. F. M.; Majid, Z.; Lau, C. L.; Yusoff, A. R.; Idris, K. M.; Aspuri, A.
2017-02-01
Laser Scanner technology become an option in the process of collecting data nowadays. It is composed of Airborne Laser Scanner (ALS) and Terrestrial Laser Scanner (TLS). ALS like Phoenix AL3-32 can provide accurate information from the viewpoint of rooftop while TLS as Leica C10 can provide complete data for building facade. However if both are integrated, it is able to produce more accurate data. The focus of this study is to integrate both types of data acquisition of ALS and TLS and determine the accuracy of the data obtained. The final results acquired will be used to generate models of three-dimensional (3D) buildings. The scope of this study is focusing on data acquisition of UTM Eco-home through laser scanning methods such as ALS which scanning on the roof and the TLS which scanning on building façade. Both device is used to ensure that no part of the building that are not scanned. In data integration process, both are registered by the selected points among the manmade features which are clearly visible in Cyclone 7.3 software. The accuracy of integrated data is determined based on the accuracy assessment which is carried out using man-made registration methods. The result of integration process can achieve below 0.04m. This integrated data then are used to generate a 3D model of UTM Eco-home building using SketchUp software. In conclusion, the combination of the data acquisition integration between ALS and TLS would produce the accurate integrated data and able to use for generate a 3D model of UTM eco-home. For visualization purposes, the 3D building model which generated is prepared in Level of Detail 3 (LOD3) which recommended by City Geographic Mark-Up Language (CityGML).
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Acupuncture sensation during ultrasound guided acupuncture needling
Park, Jongbae J.; Akazawa, Margeaux; Ahn, Jaeki; Beckman-Harned, Selena; Lin, Feng-Chang; Lee, Kwangjae; Fine, Jason; Davis, Robert T; Langevin, Helene
2014-01-01
Background Although acupuncture sensation (also known as de qi) is a cornerstone of traditional acupuncture therapy, most research has accepted the traditional method of defining acupuncture sensation only through subjective patient reports rather than on any quantifiable physiological basis. Purpose To preliminarily investigate the frequency of key sensations experienced while needling to specific, quantifiable tissue levels (TLs) guided by ultrasound (US) imaging. Methods Five participants received needling at two acupuncture points and two control points at four TLs. US scans were used to determine when each TL was reached. Each volunteer completed 32 sets of modified Southampton Needle Sensation Questionnaires. Part one of the study tested sensations experienced at each TL and part two compared the effect of oscillation alone versus oscillation + rotation. Results In all volunteers, the frequency of pricking, sharp sensations was significantly greater in shallower TLs than deeper (p=0.007); the frequency of sensations described as deep, dull and heavy, as spreading, and as electric shocks was significantly greater in deeper TLs than shallower (p=0.002). Sensations experienced did not significantly differ between real and control points within each of three TLs (p>0.05) except TL 4 (p=0.006). The introduction of needle rotation significantly increased deep, dull, heavy sensations, but not pricking and sharp sensations; within each level, the spectrum of sensation experienced during both oscillation + rotation and oscillation alone did not significantly differ between acupuncture and control points. Conclusion The preliminary study indicates a strong connection between acupuncture sensation and both tissue depth and needle rotation. Furthermore, the new methodology has been proven feasible. A further study with an objective measurement is warranted. PMID:21642648
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DOE Office of Scientific and Technical Information (OSTI.GOV)
DiCostanzo, D; Ayan, A; Woollard, J
Purpose: To automate the daily verification of each patient’s treatment by utilizing the trajectory log files (TLs) written by the Varian TrueBeam linear accelerator while reducing the number of false positives including jaw and gantry positioning errors, that are displayed in the Treatment History tab of Varian’s Chart QA module. Methods: Small deviations in treatment parameters are difficult to detect in weekly chart checks, but may be significant in reducing delivery errors, and would be critical if detected daily. Software was developed in house to read TLs. Multiple functions were implemented within the software that allow it to operate viamore » a GUI to analyze TLs, or as a script to run on a regular basis. In order to determine tolerance levels for the scripted analysis, 15,241 TLs from seven TrueBeams were analyzed. The maximum error of each axis for each TL was written to a CSV file and statistically analyzed to determine the tolerance for each axis accessible in the TLs to flag for manual review. The software/scripts developed were tested by varying the tolerance values to ensure veracity. After tolerances were determined, multiple weeks of manual chart checks were performed simultaneously with the automated analysis to ensure validity. Results: The tolerance values for the major axis were determined to be, 0.025 degrees for the collimator, 1.0 degree for the gantry, 0.002cm for the y-jaws, 0.01cm for the x-jaws, and 0.5MU for the MU. The automated verification of treatment parameters has been in clinical use for 4 months. During that time, no errors in machine delivery of the patient treatments were found. Conclusion: The process detailed here is a viable and effective alternative to manually checking treatment parameters during weekly chart checks.« less
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Matsuda, Daiki; Dunoyer, Patrice; Hemmer, Odile; Fritsch, Christiane; Dreher, Theo W.
2000-01-01
The role of valine aminoacylation of the two genomic RNAs of Peanut clump virus (PCV) was studied by comparing the amplification in vivo of RNAs with GAC, GΔC, or CCA anticodons in the tRNA-like structure (TLS) present at the 3′ end of each viral RNA. The PCV RNA1 TLS of isolate PCV2 possesses a GAC anticodon and is capable of highly efficient valylation, whereas the RNA2 TLS has a GΔC anticodon that does not support valylation. The presence in RNA1 of GΔC or CCA anticodons that conferred nonvalylatability resulted in about 2- to 4-fold and a 14- to 24-fold reduction, respectively, in RNA accumulations in tobacco BY-2 protoplasts inoculated with the RNA1 variants together with wild-type RNA2(GΔC). No differences in RNA levels were observed among protoplasts inoculated with the three variant RNA2s in the presence of wild-type RNA1(GAC). All combinations of valylatable and nonvalylatable RNAs 1 and 2 were similarly infectious in Nicotiana benthamiana plants, and viral RNAs accumulated to similar levels; all input TLS sequences were present unchanged in apical leaves. In direct competition experiments in N. benthamiana plants, however, both RNA1 and RNA2 with GAC valylatable anticodons outcompeted the nonvalylatable variants. We conclude that valylation provides a small but significant replicational advantage to both PCV RNAs. Sequence analysis of the TLS from RNA2 of a second PCV isolate, PO2A, revealed the presence of an intact GAC valine anticodon, suggesting that the differential valylation of the genomic RNAs of isolate PCV2 is not a general characteristic of PCV. PMID:10954573
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A hierarchical methodology for urban facade parsing from TLS point clouds
NASA Astrophysics Data System (ADS)
Li, Zhuqiang; Zhang, Liqiang; Mathiopoulos, P. Takis; Liu, Fangyu; Zhang, Liang; Li, Shuaipeng; Liu, Hao
2017-01-01
The effective and automated parsing of building facades from terrestrial laser scanning (TLS) point clouds of urban environments is an important research topic in the GIS and remote sensing fields. It is also challenging because of the complexity and great variety of the available 3D building facade layouts as well as the noise and data missing of the input TLS point clouds. In this paper, we introduce a novel methodology for the accurate and computationally efficient parsing of urban building facades from TLS point clouds. The main novelty of the proposed methodology is that it is a systematic and hierarchical approach that considers, in an adaptive way, the semantic and underlying structures of the urban facades for segmentation and subsequent accurate modeling. Firstly, the available input point cloud is decomposed into depth planes based on a data-driven method; such layer decomposition enables similarity detection in each depth plane layer. Secondly, the labeling of the facade elements is performed using the SVM classifier in combination with our proposed BieS-ScSPM algorithm. The labeling outcome is then augmented with weak architectural knowledge. Thirdly, least-squares fitted normalized gray accumulative curves are applied to detect regular structures, and a binarization dilation extraction algorithm is used to partition facade elements. A dynamic line-by-line division is further applied to extract the boundaries of the elements. The 3D geometrical façade models are then reconstructed by optimizing facade elements across depth plane layers. We have evaluated the performance of the proposed method using several TLS facade datasets. Qualitative and quantitative performance comparisons with several other state-of-the-art methods dealing with the same facade parsing problem have demonstrated its superiority in performance and its effectiveness in improving segmentation accuracy.
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Defense in Depth Added to Malicious Activities Simulation Tools (MAST)
2015-09-01
cipher suites. The TLS Handshake is a combination of three components: handshake, change cipher spec, and alert. 41 (1) The Handshake ( Hello ) The...TLS Handshake, specifically the “ Hello ” portion, is designed to negotiate session parameters (cipher suite). The client informs the server of the...protocols and standards that it supports and then the server selects the highest common protocols and standards. Specifically, the Client Hello message
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Wetland Microtopographic Structure is Revealed with Terrestrial Laser Scanning
NASA Astrophysics Data System (ADS)
Diamond, J.; Stovall, A. E.; Mclaughlin, D. L.; Slesak, R.
2017-12-01
Wetland microtopographic structure and its function has been the subject of research for decades, and several investigations suggest that microtopography is generated by autogenic ecohydrologic processes. But due to the difficulty of capturing the true spatial variability of wetland microtopography, many of the hypotheses for self-organization have remained elusive to test. We employ a novel method of Terrestrial Laser Scanning (TLS) that reveals an unprecedented high-resolution (<0.5 cm) glimpse at the true spatial structure of wetland microtopography in 10 black ash (Fraxinus nigra) stands of northern Minnesota, USA. Here we present the first efforts to synthesize this information and show that TLS provides a good representation of real microtopographic structure, where TLS accurately measured hummock height, but occlusion of low points led to a slight negative bias. We further show that TLS can accurately locate microtopographic high points (hummocks), as well as estimate their height and area. Using these new data, we estimate distributions in both microtopographic elevation and hummock area in each wetland and relate these to monitored hydrologic regime; in doing so, we test hypotheses linking emergent microtopographic patterns to putative hydrologic controls. Finally, we discuss future efforts to enumerate consequent influences of microtopography on wetland systems (soil properties and vegetation composition).
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Soria, Gaston; Speroni, Juliana; Podhajcer, Osvaldo L; Prives, Carol; Gottifredi, Vanesa
2008-10-01
Although p21 upregulation is required to block cell-cycle progression following many types of genotoxic insult, UV irradiation triggers p21 proteolysis. The significance of the increased p21 turnover is unclear and might be associated with DNA repair. While the role of p21 in nucleotide excision repair (NER) remains controversial, recent reports have explored its effect on translesion DNA synthesis (TLS), a process that avoids replication blockage during S phase. Herein, we analyze the effect of p21 on different PCNA-driven processes including DNA replication, NER and TLS. Whereas only the CDK-binding domain of p21 is required for cell-cycle arrest in unstressed cells, neither the CDK-binding nor the PCNA-binding domain of p21 is able to block early and late steps of NER. Intriguingly, through its PCNA-binding domain, p21 inhibits the interaction of the TLS polymerase, pol eta (pol eta), with PCNA and impairs the assembly of pol eta foci after UV. Moreover, this obstruction correlates with accumulation of phosphorylated H2AX and increased apoptosis. By showing that p21 is a negative regulator of PCNA-pol eta interaction, our data unveil a link between efficient TLS and UV-induced degradation of p21.
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NASA Astrophysics Data System (ADS)
Suchocki, Czesław; Katzer, Jacek; Panuś, Arkadiusz
2017-06-01
Terrestrial Laser Scanner (TLS) method which is commonly used for geodetic applications has a great potential to be successfully harnessed for multiple civil engineering applications. One of the most promising uses of TLS in construction industry is remote sensing of saturation of building materials. A research programme was prepared in order to prove that harnessing TLS for such an application is viable. Results presented in the current paper are a part of a much larger research programme focused on harnessing TLS for remote sensing of saturation of building materials. The paper describes results of the tests conducted with an impulse scanner Leica C-10. Tests took place both indoors (in a stable lab conditions) and outdoors (in a real environment). There were scanned specimens of the most popular building materials in Europe. Tested specimens were dried and saturated (including capillary rising moisture). One of the tests was performed over a period of 95 hours. Basically, a concrete specimen was scanned during its setting and hardening. It was proven that absorption of a laser signal is influenced by setting and hardening of concrete. Outdoor tests were based on scanning real buildings with partially saturated facades. The saturation assessment was based on differences of values of intensity. The concept proved to be feasible and technically realistic.
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Modelling Single Tree Structure with Terrestrial Laser Scanner
NASA Astrophysics Data System (ADS)
Yurtseven, H.; Akgül, M.; Gülci, S.
2017-11-01
Recent technological developments, which has reliable accuracy and quality for all engineering works, such as remote sensing tools have wide range use in forestry applications. Last decade, sustainable use and management opportunities of forest resources are favorite topics. Thus, precision of obtained data plays an important role in evaluation of current status of forests' value. The use of aerial and terrestrial laser technology has more reliable and effective models to advance the appropriate natural resource management. This study investigates the use of terrestrial laser scanner (TLS) technology in forestry, and also the methodological data processing stages for tree volume extraction is explained. Z+F Imager 5010C TLS system was used for measure single tree information such as tree height, diameter of breast height, branch volume and canopy closure. In this context more detailed and accurate data can be obtained than conventional inventory sampling in forestry by using TLS systems. However the accuracy of obtained data is up to the experiences of TLS operator in the field. Number of scan stations and its positions are other important factors to reduce noise effect and accurate 3D modelling. The results indicated that the use of point cloud data to extract tree information for forestry applications are promising methodology for precision forestry.
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Random-Defect Laser: Manipulating Lossy Two-Level Systems to Produce a Circuit with Coherent Gain
NASA Astrophysics Data System (ADS)
Rosen, Yaniv
Random two-level system (TLS) defects in dielectrics absorb energy and limit the coherence of superconducting quantum devices including qubits and resonators used in quantum computing applications. So far attempts to reduce this loss have been confined to device design and material optimization. In the present work we demonstrate the ability to control the loss of a dielectric by directly manipulating the population of its TLSs using a uniform swept dc electric field and two AC pump fields. The swept field shifts the TLS energies through a fixed-frequency pump field resulting in an inversion of the TLS population. After the sweep, the TLSs are brought into degeneracy with the resonator where they emit photons. The emission is found to be dependent on individual cavity-TLS interactions, and the narrowing linewidth at increasing photon occupancy indicates stimulated emission. Characterization with a microwave probe shows a transition from ordinary defect loss to negligible microwave absorption, and ultimately to coherent amplification. Thus, instead of absorbing microwave energy, the TLSs can be tuned to reduce loss and even amplify signals. This work was partially supported under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and LLNL LDRD SI 16-004.
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NASA Astrophysics Data System (ADS)
Besson, Ugo; Borghi, Lidia; De Ambrosis, Anna; Mascheretti, Paolo
2010-07-01
We have developed a teaching-learning sequence (TLS) on friction based on a preliminary study involving three dimensions: an analysis of didactic research on the topic, an overview of usual approaches, and a critical analysis of the subject, considered also in its historical development. We found that mostly the usual presentations do not take into account the complexity of friction as it emerges from scientific research, may reinforce some inaccurate students' conceptions, and favour a limited vision of friction phenomena. The TLS we propose begins by considering a wide range of friction phenomena to favour an initial motivation and a broader view of the topic and then develops a path of interrelated observations, experiments, and theoretical aspects. It proposes the use of structural models, involving visual representations and stimulating intuition, aimed at helping students build mental models of friction mechanisms. To facilitate the reproducibility in school contexts, the sequence is designed as an open source structure, with a core of contents, conceptual correlations and methodological choices, and a cloud of elements that can be re-designed by teachers. The sequence has been tested in teacher education and in upper secondary school, and has shown positive results in overcoming student difficulties and stimulating richer reasoning based on the structural models we suggested. The proposed path has modified the teachers' view of the topic, producing a motivation to change their traditional presentations. The open structure of the sequence has facilitated its implementation by teachers in school in coherence with the rationale of the proposal.
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NASA Astrophysics Data System (ADS)
Castagnetti, Cristina; Bertacchini, Eleonora; Capra, Alessandro; Rivola, Riccardo
2013-04-01
The heart of this research is to provide an efficient methodology for a reliable acquisition and interpretation of Terrestrial Laser Scanner (TLS) data in the application field of landslide monitoring. In particular, rockslides, which are characterized by vertical walls of rock and by a complex morphology, are of great concern in the study. In these cases the airborne laser scanning is not able to provide useful and reliable description and the terrestrial laser scanning might be the only possible choice to obtain a good and reliable description of the geomorphology or to identify the changes occurred over time. The last purpose is still a challenging task when long distances are involved because the accurate and punctual identification of displacements is not possible due to the laser beam divergence. The final purpose of the research is a proposal of a methodology which is based on TLS technology for identifying displacements and extracting geomorphological changes. The approach is clearly based on a multi-temporal analysis which is computed on several repetitions of TLS surveys performed on the area of interest. To achieve best results and optimize the processing strategy, different methods about point clouds alignment have been tested together with algorithms both for filtering and post-processing. The case study is the Collagna Landslide that is located in the North Appennines (Reggio Emilia, Italy) on the right flank of Biola torrent. The large scale composite landslide area is made both by a wide rock slide sector and a more limited earth slide sector that, after high precipitation rates, disrupted the National Road 63 in December 2008. An integrated monitoring system is installed since 2009 and comprises both point-based technologies such as extensometers, total station and global positioning system, and also area-based technologies such as airborne laser scanner, long-range TLS and ground-based radar. This choice allows to couple the advantages of both approaches. The research focuses on TLS surveys for trying to detect displacements which might be responsible for instability. Four point clouds acquired in the last two years allow to monitor the spatial displacements of the whole slope, especially focusing on the rockslide sector. It is worth to underline an important aspect which contributes to highlight the significance of the work: the mean scanning distance is about 1.3 km. Few examples exist in literature about the use of very long-range TLS for displacements investigation. By sequentially analyzing TLS surfaces, displacement maps have been obtained for the rockslide area. Confirmation have been achieved by comparing results with movements of reflectors sited on the entire slope and continuously measured by total station. Such validation strengthens the idea that TLS has serious potentialities to be successfully used for analyzing instability. Comparing surfaces is not easy at all, thus a discussion about the encountered problems will be taken into account: any significant detail about potentialities and difficulties of the alignment strategy and the processing procedure will be given together with details about the specific algorithm implemented for filtering displacements by taking into account actual geomorphological conditions.
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Ragas, Aude; Roussel, Lucie; Puzo, Germain; Rivière, Michel
2007-02-23
Tuberculosis is still a major health problem, and understanding the mechanism by which Mycobacterium tuberculosis (Mtb) invades and colonizes its host target cells remains an important issue for the control of infection. The innate immune system C-type lectins (C-TLs), including the human pulmonary surfactant protein A (PSP-A), have been recently identified as determinant players in the early recognition of the invading pathogen and in mounting the host defense response. Although the antigenic lipoglycan mannosylated lipoarabinomannan is currently considered to be the major C-TL target on the mycobacterial surface, the recognition by some C-TLs of the only mycobacterial species composing the "Mtb complex" indicates that mannosylated lipoarabinomannan cannot account alone for this specificity. Thus, we searched for the mycobacterial molecules targeted by human PSP-A, focusing our attention on the Mtb surface glycoproteins. We developed an original functional proteomic approach based on a lectin blot assay using crude human bronchoalveolar lavage fluid as a source of physiological PSP-A. Combined with selective cell-surface protein extraction and mass spectrometry peptide mapping, this strategy allowed us to identify the Apa (alanine- and proline-rich antigenic) glycoprotein as new potential target for PSP-A. This result was supported by direct binding of PSP-A to purified Apa. Moreover, EDTA addition or deglycosylation of purified Apa samples completely abolished the interaction, demonstrating that the interaction is calcium- and mannose-dependent, as expected. Finally, we provide convincing evidence that Apa, formerly considered as mainly secreted, is associated with the cell wall for a sufficiently long time to aid in the attachment of PSP-A. Because, to date, Apa seems to be restricted to the Mtb complex strains, we propose that it may account for the selective recognition of those strains by PSP-A and other immune system C-TLs containing homologous functional domains.
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ERIC Educational Resources Information Center
Bird, Geoffrey; Hood, Terry; White, Brian
This paper offers findings from a case study of western Canada's Tourism Learning System (TLS) initiative. TLS aims to facilitate possible adoption of a national tourism learning system, as well as adaptation of development principles to other industries. The tourism industry now accounts for more than 25% of the world's trade and nearly 10% of…
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Skacel, S. T.; Institut für Mikro- und Nanoelektronische Systeme, Karlsruher Institut für Technologie, Hertzstraße 16, D-76187 Karlsruhe; Kaiser, Ch.
2015-01-12
We have investigated dielectric losses in amorphous silicon oxide (a-SiO) thin films under operating conditions of superconducting qubits (mK temperatures and low microwave powers). For this purpose, we have developed a broadband measurement setup employing multiplexed lumped element resonators using a broadband power combiner and a low-noise amplifier. The measured temperature and power dependences of the dielectric losses are in good agreement with those predicted for atomic two-level tunneling systems (TLS). By measuring the losses at different frequencies, we found that the TLS density of states is energy dependent. This had not been seen previously in loss measurements. These resultsmore » contribute to a better understanding of decoherence effects in superconducting qubits and suggest a possibility to minimize TLS-related decoherence by reducing the qubit operation frequency.« less
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Static terrestrial laser scanning of juvenile understory trees for field phenotyping
NASA Astrophysics Data System (ADS)
Wang, Huanhuan; Lin, Yi
2014-11-01
This study was to attempt the cutting-edge 3D remote sensing technique of static terrestrial laser scanning (TLS) for parametric 3D reconstruction of juvenile understory trees. The data for test was collected with a Leica HDS6100 TLS system in a single-scan way. The geometrical structures of juvenile understory trees are extracted by model fitting. Cones are used to model trunks and branches. Principal component analysis (PCA) is adopted to calculate their major axes. Coordinate transformation and orthogonal projection are used to estimate the parameters of the cones. Then, AutoCAD is utilized to simulate the morphological characteristics of the understory trees, and to add secondary branches and leaves in a random way. Comparison of the reference values and the estimated values gives the regression equation and shows that the proposed algorithm of extracting parameters is credible. The results have basically verified the applicability of TLS for field phenotyping of juvenile understory trees.
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Learned Compact Local Feature Descriptor for Tls-Based Geodetic Monitoring of Natural Outdoor Scenes
NASA Astrophysics Data System (ADS)
Gojcic, Z.; Zhou, C.; Wieser, A.
2018-05-01
The advantages of terrestrial laser scanning (TLS) for geodetic monitoring of man-made and natural objects are not yet fully exploited. Herein we address one of the open challenges by proposing feature-based methods for identification of corresponding points in point clouds of two or more epochs. We propose a learned compact feature descriptor tailored for point clouds of natural outdoor scenes obtained using TLS. We evaluate our method both on a benchmark data set and on a specially acquired outdoor dataset resembling a simplified monitoring scenario where we successfully estimate 3D displacement vectors of a rock that has been displaced between the scans. We show that the proposed descriptor has the capacity to generalize to unseen data and achieves state-of-the-art performance while being time efficient at the matching step due the low dimension.
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Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin.
Cui, Gaofeng; Botuyan, Maria Victoria; Mer, Georges
2018-05-18
REV1 is an evolutionarily conserved translesion synthesis (TLS) DNA polymerase and an assembly factor key for the recruitment of other TLS polymerases to DNA damage sites. REV1-mediated recognition of ubiquitin in the proliferative cell nuclear antigen is thought to be the trigger for TLS activation. Here we report the solution NMR structure of a 108-residue fragment of human REV1 encompassing the two putative ubiquitin-binding motifs UBM1 and UBM2 in complex with ubiquitin. While in mammals UBM1 and UBM2 are both required for optimal association of REV1 with replication factories after DNA damage, we show that only REV1 UBM2 binds ubiquitin. Structure-guided mutagenesis in Saccharomyces cerevisiae further highlights the importance of UBM2 for REV1-mediated mutagenesis and DNA damage tolerance. Copyright © 2018 Elsevier Ltd. All rights reserved.
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Bloch-Siegert shift in an interacting Bose-Einstein condensate
NASA Astrophysics Data System (ADS)
Zhang, Jinyi; Eigen, Christoph; Lopes, Raphael; Garratt, Sam; Rousso, David; Smith, Robert P.; Hadzibabic, Zoran; Navon, Nir
2017-04-01
The Bloch-Siegert shift (BSS) is a paradigmatic frequency shift that arises from the nonlinear response of a two-level system (TLS) subjected to strong driving fields. When a TLS is driven by a linearly polarized field, the co-rotating-wave component leads to the famous Rabi oscillations. By contrast the co-rotating-wave component, whose role is usually neglected in a weak driving, leads to a frequency shift of the TLS resonance frequency. This phenomenon is encountered in various areas, from quantum optics to nuclear magnetic resonance.Here, we investigate the BSS in a box-trapped 87 Rb Bose-Einstein condensate (BEC) driven by a strong oscillating magnetic field gradient. By tuning the chemical potential of the gas, we investigate how the BSS evolves from the ideal shift of the two lowest energy levels of a single particle in a box to the unexplored shift of long-wavelength collective excitations of the interacting BEC.
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Ultratraces of carotenes in tomato purées: HPLC-TLS study
NASA Astrophysics Data System (ADS)
Luterotti, S.; Marković, K.; Franko, M.; Bicanic, D.; Vahčić, N.; Doka, O.
2003-01-01
The present study was designed to provide information about (i) the profile of carotene pigments and (ii) trace quantities of lycopene and β-carotene left in tomato purées. The ultrasensitive method comprising HPLC and thermal lens spectrometric (TLS) detection enabled us to detect as low as 0.3 and 1.1 ng ml-1 lycopene and β-carotene in purée extracts, respectively. Total concentration of β-carotene and lycopene (varying from 3 to 170 ng g-1) in the examined tomato purées may serve as an indicator of the carotene-specific antioxidative capacity of these products. Although conventional spectrophotometry can be used to rapidly assess the quality of products derived from tomatoes, a highly sensitive and selective method such as HPLC-TLS is needed for reliable analyses of samples such as, for example, those subjected to inappropriate storage and/or handling.
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Characterizing Tropical Forest Structure using Field-based Measurements and a Terrestrial Lidar
NASA Astrophysics Data System (ADS)
Palace, M. W.; Sullivan, F.; Ducey, M. J.; Herrick, C.
2015-12-01
Forest structure comprises numerous quantifiable components of forest biometric characteristics, one of which is tree architecture. This structural component is important in the understanding of the past and future trajectories of these biomes. Tropical forests are often considered the most structurally complex and yet least understood of forested ecosystems. New technologies have provided novel avenues for quantifying properties of forested ecosystems, one of which is LIght Detection And Ranging (lidar). This sensor can be deployed on satellite, aircraft, unmanned aerial vehicles, and terrestrial platforms. In this study we examined the efficacy of a terrestrial lidar scanner (TLS) system in a tropical forest to estimate forest structure. Our study was conducted in January 2012 at La Selva, Costa Rica at twenty locations in predominantly undisturbed forest. At these locations we collected field measured biometric attributes using a variable plot design. We also collected TLS data from the center of each plot. Using this data we developed relative vegetation profiles (RVPs) and calculated a series of parameters including entropy, FFT, number of layers and plant area index to develop statistical relationships with field data. We developed statistical models using multiple linear regressions, all of which converged on statistically significant relationships with the strongest relationship being for mean crown depth (r2 = 0.87, p < 0.01, RMSE = 1.1 m). Tree density was found to have the least strong statistical relationship (r2 = 0.45, p < 0.01, RMSE = 160.7 n ha-1). We found significant relationship between basal area and lidar metrics (r2 = 0.76, p < 0.001, RMSE = 3.68 number ha-1). Models developed for biomass 1 had a higher r-squared value and lower RMSE than that of biomass2 (biomass1: r2 = 0.7, p < 0.01, RMSE = 28.94 Mg ha-1; biomass2: r2 = 0.67, p < 0.01, RMSE = 40.62 Mg ha-1). Parameters selected in our models varied, thus indicating the potential relevance of multiple features in canopy profiles and geometry that are related to field-measured structure. Our work indicates that TLS data can provide useful information on tropical forest structure.
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NASA Astrophysics Data System (ADS)
Webster, C. R.; Mahaffy, P. R.; Atreya, S. K.; Flesch, G.
2015-12-01
Over the last several years, Earth-based telescopic and Mars orbit remote sensing instruments have reported significant abundances of methane on Mars ranging to tens of parts-per-billion by volume (ppbv). These observations have reported "plumes" or localized patches of methane with variations on timescales much faster than model predictions, leading to speculation of sources from sub-surface methanogen bacteria, geological water-rock reactions, degassing of infalling comets, or UV degradation of micro-meteorites or interplanetary dust. Using the Tunable Laser Spectrometer (TLS) in the Sample Analysis at Mars (SAM) instrument suite on Curiosity, we report in situ detection of methane at background levels of ~0.7 ppbv and also in an episodic release at ten times this value. We will discuss the mechanisms that are believed contributing to these two regimes, report new measurements made since the publication in Science1, and discuss the evidence and implications for seasonal vs. episodic release. Reference 1. "Mars Methane Detection and Variability at Gale Crater", C. R. Webster et al., Science, 347, 415-417 (2015). The research described here was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (NASA).
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Proteomic differences between native and tissue‐engineered tendon and ligament
Tew, Simon R.; Peffers, Mandy; Canty‐Laird, Elizabeth G.; Comerford, Eithne
2016-01-01
Tendons and ligaments (T/Ls) play key roles in the musculoskeletal system, but they are susceptible to traumatic or age‐related rupture, leading to severe morbidity as well as increased susceptibility to degenerative joint diseases such as osteoarthritis. Tissue engineering represents an attractive therapeutic approach to treating T/L injury but it is hampered by our poor understanding of the defining characteristics of the two tissues. The present study aimed to determine differences in the proteomic profile between native T/Ls and tissue engineered (TE) T/L constructs. The canine long digital extensor tendon and anterior cruciate ligament were analyzed along with 3D TE fibrin‐based constructs created from their cells. Native tendon and ligament differed in their content of key structural proteins, with the ligament being more abundant in fibrocartilaginous proteins. 3D T/L TE constructs contained less extracellular matrix (ECM) proteins and had a greater proportion of cellular‐associated proteins than native tissue, corresponding to their low collagen and high DNA content. Constructs were able to recapitulate native T/L tissue characteristics particularly with regard to ECM proteins. However, 3D T/L TE constructs had similar ECM and cellular protein compositions indicating that cell source may not be an important factor for T/L tissue engineering. PMID:27080496
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NASA Astrophysics Data System (ADS)
Fischer, M.; Huss, M.; Hoelzle, M.
2015-12-01
Measuring glacier mass balance is important as it directly reflects the climatic forcing on the glacier surface. Today, repeated comparison of digital elevation models (DEMs) is a popular and widely used approach to derive surface elevation, volume and mass changes for a large number of glaciers. In high-mountain environments, airborne laser scanning (ALS) techniques currently provide the most accurate and highest resolution DEMs on the catchment scale, allowing the computation of glacier changes on an annual or even semi-annual basis. For monitoring individual glaciers though, terrestrial laser scanning (TLS) is easier and more cost-efficiently applied on the seasonal timescale compared to ALS. Since most recently, the application of the latest generation of ultra-long-range near infrared TLS systems allows the acquisition of surface elevation information over snow and ice of unprecedented quality and over larger zones than with previous near infrared TLS devices. Although very small glaciers represent the majority in number in most mountain ranges on Earth, their response to climatic changes is still not fully understood and field measurements are sparse. Therefore, a programme was set up in 2012 to monitor both the seasonal and annual surface mass balance of six very small glaciers across the Swiss Alps using the direct glaciological method. As often nearly the entire surface is visible from one single location, TLS is a highly promising technique to generate repeated high-resolution DEMs as well as to derive seasonal geodetic mass balances of very small ice masses. In this study, we present seasonal surface elevation, volume and geodetic mass changes for five very small glaciers in Switzerland (Glacier de Prapio, Glacier du Sex Rouge, St. Annafirn, Schwarzbachfirn and Pizolgletscher) derived from the comparison of seasonally repeated high-resolution DEMs acquired since autumn 2013 with the new ultra-long-range TLS device Riegl VZ-6000. We show the different processing steps necessary to derive geodetic glacier changes from the raw data (the TLS point clouds), comment on the accuracy of our results and compare them to very dense in-situ measurements, and thus investigate the potential of our approach to circumvent laborious and time consuming glaciological mass balance measurements of very small glaciers.
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Physiological functions and pathobiology of TDP-43 and FUS/TLS proteins.
Ratti, Antonia; Buratti, Emanuele
2016-08-01
The multiple roles played by RNA binding proteins in neurodegeneration have become apparent following the discovery of TAR DNA binding protein 43 kDa (TDP-43) and fused in sarcoma/translocated in liposarcoma (FUS/TLS) involvement in amyotrophic lateral sclerosis and frontotemporal lobar dementia. In these two diseases, the majority of patients display the presence of aggregated forms of one of these proteins in their brains. The study of their functional properties currently represents a very promising target for developing the effective therapeutic options that are still lacking. This aim, however, must be preceded by an accurate evaluation of TDP-43 and FUS/TLS biological functions, both in physiological and disease conditions. Recent findings have uncovered several aspects of RNA metabolism that can be affected by misregulation of these two proteins. Progress has also been made in starting to understand how the aggregation of these proteins occurs and spreads from cell to cell. The aim of this review will be to provide a general overview of TDP-43 and FUS/TLS proteins and to highlight their physiological functions. At present, the emerging picture is that TDP-43 and FUS/TLS control several aspects of an mRNA's life, but they can also participate in DNA repair processes and in non-coding RNA metabolism. Although their regulatory activities are similar, they regulate mainly distinct RNA targets and show different pathogenetic mechanisms in amyotrophic lateral sclerosis/frontotemporal lobar dementia diseases. The identification of key events in these processes represents today the best chance of finding targetable options for therapeutic approaches that might actually make a difference at the clinical level. The two major RNA Binding Proteins involved in Amyotrophic Lateral Sclerosisi and Frontotemporal Dementia are TDP-43 and FUST/TLS. Both proteins are involved in regulating all aspects of RNA and RNA life cycle within neurons, from transcription, processing, and transport/stability to the formation of cytoplasmic and nuclear stress granules. For this reason, the aberrant aggregation of these factors during disease can impair multiple RNA metabolic pathways and eventually lead to neuronal death/inactivation. The purpose of this review is to provide an up-to-date perspective on what we know about this issue at the molecular level. This article is part of the Frontotemporal Dementia special issue. © 2016 International Society for Neurochemistry.
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NASA Astrophysics Data System (ADS)
Brach, Marcin; Chormański, Jarosław
2014-05-01
The exact determination of water storage capacity in river valley is an important issue for hydrologists, ecologist and flood modellers. In case of natural river valley, the dense and complexity vegetation of the natural ecosystems can influence the proper identification of the water storage. Methods considered to be sufficient in other cases (urbanized, agricultural) may not produce correct results. Sedge communities in natural river valleys form characteristic tussocks, built from the species roots, other organic material and silt or mud. They are formed due to partial flooding during the inundation, so the plants can survive in hard, anaerobic conditions. They can growth even up to 0.5 meters, which is not so visible due to very dense vegetation in the valleys. These tussocks form a microtopography or a river valley. Currently, the most commonly used technology to register the terrain topography is an Airborne Laser Scanning (ALS), but in the case of the tussocks and the dense vegetation it generates high errors on elevation in the areas of the sedges (Carex appropinquata). This study concerns the Upper Biebrza Valley which is located in the northeastern Poland. For purpose of our work we used Terrestrial Laser Scanner (TLS) technology to determine microtopography of selected fields. Before measurements, the green part of the sedge was cut in selected measurements fields. It make possible to register only tussocks shape. Next, step was collection of the airborne ALS data of the valley with density of 8 points/sq m. The experimental field was divided on two sub-fields: one was cut and scanned using TLS before ALS collection, while the second after. Data collected as ALS and the TLS were then compared. The accuracy of the ALS data depends on the land cover of an area, while TLS accuracy is around 2 millimeters (when georeferenced it depends on the accuracy of reference points - in our case it was made using GPS RTK which gave us accuracy of few centimeters). The analysis shown that differences between ALS measurements and TLS on leaf free area is on average of 5 centimeters, while on areas which were not mowed it grows up to 0,5 m. Thanks to this studies we were able to determine water storage possibilities of valley while considering the tussocks shape.
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Monitoring the Thermal Parameters of Different Edible Oils by Using Thermal Lens Spectrometry
NASA Astrophysics Data System (ADS)
Jiménez-Pérez, J. L.; Cruz-Orea, A.; Lomelí Mejia, P.; Gutierrez-Fuentes, R.
2009-08-01
Several vegetable edible oils (sunflower, canola, soya, and corn) were used to study the thermal diffusivity of edible oils. Thermal lens spectrometry (TLS) was applied to measure the thermal properties. The results showed that the obtained thermal diffusivities with this technique have good agreement when compared with literature values. In this technique an Ar+ laser and intensity stabilized He-Ne laser were used as the heating source and probe beam, respectively. These studies may contribute to a better understanding of the physical properties of edible oils and the quality of these important foodstuffs.
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Strong Password-Based Authentication in TLS Using the Three-PartyGroup Diffie-Hellman Protocol
DOE Office of Scientific and Technical Information (OSTI.GOV)
Abdalla, Michel; Bresson, Emmanuel; Chevassut, Olivier
2006-08-26
The Internet has evolved into a very hostile ecosystem where"phishing'' attacks are common practice. This paper shows that thethree-party group Diffie-Hellman key exchange can help protect againstthese attacks. We have developed a suite of password-based cipher suitesfor the Transport Layer Security (TLS) protocol that are not onlyprovably secure but also assumed to be free from patent and licensingrestrictions based on an analysis of relevant patents in thearea.
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NASA Astrophysics Data System (ADS)
Kankare, Ville; Vauhkonen, Jari; Tanhuanpää, Topi; Holopainen, Markus; Vastaranta, Mikko; Joensuu, Marianna; Krooks, Anssi; Hyyppä, Juha; Hyyppä, Hannu; Alho, Petteri; Viitala, Risto
2014-11-01
Detailed information about timber assortments and diameter distributions is required in forest management. Forest owners can make better decisions concerning the timing of timber sales and forest companies can utilize more detailed information to optimize their wood supply chain from forest to factory. The objective here was to compare the accuracies of high-density laser scanning techniques for the estimation of tree-level diameter distribution and timber assortments. We also introduce a method that utilizes a combination of airborne and terrestrial laser scanning in timber assortment estimation. The study was conducted in Evo, Finland. Harvester measurements were used as a reference for 144 trees within a single clear-cut stand. The results showed that accurate tree-level timber assortments and diameter distributions can be obtained, using terrestrial laser scanning (TLS) or a combination of TLS and airborne laser scanning (ALS). Saw log volumes were estimated with higher accuracy than pulpwood volumes. The saw log volumes were estimated with relative root-mean-squared errors of 17.5% and 16.8% with TLS and a combination of TLS and ALS, respectively. The respective accuracies for pulpwood were 60.1% and 59.3%. The differences in the bucking method used also caused some large errors. In addition, tree quality factors highly affected the bucking accuracy, especially with pulpwood volume.
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Gas Leak Detection by Dilution of Atmospheric Oxygen
Lambrecht, Armin; Maier, Eric; Strahl, Thomas; Herbst, Johannes
2017-01-01
Gas leak detection is an important issue in infrastructure monitoring and industrial production. In this context, infrared (IR) absorption spectroscopy is a major measurement method. It can be applied in an extractive or remote detection scheme. Tunable laser spectroscopy (TLS) instruments are able to detect CH4 leaks with column densities below 10 ppm·m from a distance of 30 m in less than a second. However, leak detection of non-IR absorbing gases such as N2 is not possible in this manner. Due to the fact that any leaking gas displaces or dilutes the surrounding background gas, an indirect detection is still possible. It is shown by sensitive TLS measurements of the ambient background concentration of O2 that N2 leaks can be localized with extractive and standoff methods for distances below 1 m. Minimum leak rates of 0.1 mbar·L/s were determined. Flow simulations confirm that the leakage gas typically effuses in a narrow jet. The sensitivity is mainly determined by ambient flow conditions. Compared to TLS detection of CH4 at 1651 nm, the indirect method using O2 at 761 nm is experimentally found to be less sensitive by a factor of 100. However, the well-established TLS of O2 may become a universal tool for rapid leakage screening of vessels that contain unknown or inexpensive gases, such as N2. PMID:29206133
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Matsuda, Daiki; Dreher, Theo W
2007-01-01
Turnip yellow mosaic virus (TYMV) RNA directs the translation of two overlapping open reading frames. Competing models have been previously published to explain ribosome access to the downstream polyprotein cistron. The Trojan horse model, based on cell-free experiments, proposes noncanonical cap-independent initiation in which the 3'-terminal tRNA-like structure (TLS) functionally replaces initiator tRNA, and the valine bound to the TLS becomes cis-incorporated into viral protein. The initiation coupling model, based on in vivo expression and ribosome toe-printing studies, proposes a variation of canonical leaky scanning. Here, we have re-examined the wheat germ extract experiments that led to the Trojan horse model, incorporating a variety of controls. We report that (1) translation in vitro from the polyprotein AUG of TYMV RNA is unchanged after removal of the 3' TLS but is stimulated by the presence of a 5'-cap; (2) the presence of free cap analog or edeine (which interferes with initiation at the ribosomal P site and its tRNA(i) (Met) involvement) inhibits translation from the polyprotein AUG; (3) the toe-prints of immediately post-initiation ribosomes on TYMV RNA are similar with and without an intact TLS; and (4) significant deacylation of valyl-TYMV RNA in wheat germ extract can complicate the detection of cis-incorporation. These results favor the initiation coupling model.
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Multiple transparency windows and Fano interferences induced by dipole-dipole couplings
NASA Astrophysics Data System (ADS)
Diniz, E. C.; Borges, H. S.; Villas-Boas, C. J.
2018-04-01
We investigate the optical properties of a two-level system (TLS) coupled to a one-dimensional array of N other TLSs with dipole-dipole coupling between the first neighbors. The first TLS is probed by a weak field, and we assume that it has a decay rate much greater than the decay rates of the other TLSs. For N =1 and in the limit of a Rabi frequency of a probe field much smaller than the dipole-dipole coupling, the optical response of the first TLS, i.e., its absorption and dispersion, is equivalent to that of a three-level atomic system in the configuration which allows one to observe the electromagnetically induced transparency (EIT) phenomenon. Thus, here we investigate an induced transparency phenomenon where the dipole-dipole coupling plays the same role as the control field in EIT in three-level atoms. We describe this physical phenomenon, named a dipole-induced transparency (DIT), and investigate how it scales with the number of coupled TLSs. In particular, we have shown that the number of TLSs coupled to the main TLS is exactly equal to the number of transparency windows. The ideas presented here are very general and can be implemented in different physical systems, such as an array of superconducting qubits, or an array of quantum dots, spin chains, optical lattices, etc.
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Predicting X-ray diffuse scattering from translation–libration–screw structural ensembles
Van Benschoten, Andrew H.; Afonine, Pavel V.; Terwilliger, Thomas C.; Wall, Michael E.; Jackson, Colin J.; Sauter, Nicholas K.; Adams, Paul D.; Urzhumtsev, Alexandre; Fraser, James S.
2015-01-01
Identifying the intramolecular motions of proteins and nucleic acids is a major challenge in macromolecular X-ray crystallography. Because Bragg diffraction describes the average positional distribution of crystalline atoms with imperfect precision, the resulting electron density can be compatible with multiple models of motion. Diffuse X-ray scattering can reduce this degeneracy by reporting on correlated atomic displacements. Although recent technological advances are increasing the potential to accurately measure diffuse scattering, computational modeling and validation tools are still needed to quantify the agreement between experimental data and different parameterizations of crystalline disorder. A new tool, phenix.diffuse, addresses this need by employing Guinier’s equation to calculate diffuse scattering from Protein Data Bank (PDB)-formatted structural ensembles. As an example case, phenix.diffuse is applied to translation–libration–screw (TLS) refinement, which models rigid-body displacement for segments of the macromolecule. To enable the calculation of diffuse scattering from TLS-refined structures, phenix.tls_as_xyz builds multi-model PDB files that sample the underlying T, L and S tensors. In the glycerophosphodiesterase GpdQ, alternative TLS-group partitioning and different motional correlations between groups yield markedly dissimilar diffuse scattering maps with distinct implications for molecular mechanism and allostery. These methods demonstrate how, in principle, X-ray diffuse scattering could extend macromolecular structural refinement, validation and analysis. PMID:26249347
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Hirota, Kouji; Yoshikiyo, Kazunori; Guilbaud, Guillaume; Tsurimoto, Toshiki; Murai, Junko; Tsuda, Masataka; Phillips, Lara G.; Narita, Takeo; Nishihara, Kana; Kobayashi, Kaori; Yamada, Kouich; Nakamura, Jun; Pommier, Yves; Lehmann, Alan; Sale, Julian E.; Takeda, Shunichi
2015-01-01
The replicative DNA polymerase Polδ consists of a catalytic subunit POLD1/p125 and three regulatory subunits POLD2/p50, POLD3/p66 and POLD4/p12. The ortholog of POLD3 in Saccharomyces cerevisiae, Pol32, is required for a significant proportion of spontaneous and UV-induced mutagenesis through its additional role in translesion synthesis (TLS) as a subunit of DNA polymerase ζ. Remarkably, chicken DT40 B lymphocytes deficient in POLD3 are viable and able to replicate undamaged genomic DNA with normal kinetics. Like its counterpart in yeast, POLD3 is required for fully effective TLS, its loss resulting in hypersensitivity to a variety of DNA damaging agents, a diminished ability to maintain replication fork progression after UV irradiation and a significant decrease in abasic site-induced mutagenesis in the immunoglobulin loci. However, these defects appear to be largely independent of Polζ, suggesting that POLD3 makes a significant contribution to TLS independently of Polζ in DT40 cells. Indeed, combining polη, polζ and pold3 mutations results in synthetic lethality. Additionally, we show in vitro that POLD3 promotes extension beyond an abasic by the Polδ holoenzyme suggesting that while POLD3 is not required for normal replication, it may help Polδ to complete abasic site bypass independently of canonical TLS polymerases. PMID:25628356
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NASA Astrophysics Data System (ADS)
Lundquist, J. K.; Bariteau, L.; Hocut, C. M.; Creegan, E.; Chow, F. K.; Mazzaro, L.; Bodini, N.; Tomaszewski, J.; Murphy, P.; Neher, J.; van Veen, L.; Pattantyus, A.
2017-12-01
To investigate the turbulent mixing events within and around Portugal's Perdigão valley during the intensive field campaign of 1 May - 15 June 2017, the University of Colorado Boulder (CU) and the Army Research Laboratory (ARL) deployed Tethered Lifting Systems (TLS). The TLS carried turbulence probes to sample from the ground to 500 m above the surface. These probes sample temperature, relative humidity, and winds, including very high-rate measurements that enable measurement of turbulence dissipation rate and temperature structure parameters. The vertical resolution of the systems is defined by the ascent and descent rates of the probes, making this platform uniquely suited for sensing and characterizng stratification and layering undetectable by other instrumentation in the campaign. Therefore, the detailed information provided by the TLS (see Figure 1) allows us to characterize the intermittent turbulence events and circulations above and within the valley with detail sufficient for evaluation of mesoscale-microscale modeling of these flows. This presentation will survey the datasets collected by the University of Colorado's TLS located in the center of the valley. Specific case studies will be highlighted, including turbine wake measurements, interactions between drainage flow down-valley and mesoscale forcing up-valley, evening transitions, and morning transitions. Several coordinated "flights" of the CU and ARL systems within and outside of the valley enabled contrasting measurements to provide insight into the terrain-driven mixing events.
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Provably Secure Password-based Authentication in TLS
DOE Office of Scientific and Technical Information (OSTI.GOV)
Abdalla, Michel; Emmanuel, Bresson; Chevassut, Olivier
2005-12-20
In this paper, we show how to design an efficient, provably secure password-based authenticated key exchange mechanism specifically for the TLS (Transport Layer Security) protocol. The goal is to provide a technique that allows users to employ (short) passwords to securely identify themselves to servers. As our main contribution, we describe a new password-based technique for user authentication in TLS, called Simple Open Key Exchange (SOKE). Loosely speaking, the SOKE ciphersuites are unauthenticated Diffie-Hellman ciphersuites in which the client's Diffie-Hellman ephemeral public value is encrypted using a simple mask generation function. The mask is simply a constant value raised tomore » the power of (a hash of) the password.The SOKE ciphersuites, in advantage over previous pass-word-based authentication ciphersuites for TLS, combine the following features. First, SOKE has formal security arguments; the proof of security based on the computational Diffie-Hellman assumption is in the random oracle model, and holds for concurrent executions and for arbitrarily large password dictionaries. Second, SOKE is computationally efficient; in particular, it only needs operations in a sufficiently large prime-order subgroup for its Diffie-Hellman computations (no safe primes). Third, SOKE provides good protocol flexibility because the user identity and password are only required once a SOKE ciphersuite has actually been negotiated, and after the server has sent a server identity.« less
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Predicting X-ray diffuse scattering from translation–libration–screw structural ensembles
Van Benschoten, Andrew H.; Afonine, Pavel V.; Terwilliger, Thomas C.; ...
2015-07-28
Identifying the intramolecular motions of proteins and nucleic acids is a major challenge in macromolecular X-ray crystallography. Because Bragg diffraction describes the average positional distribution of crystalline atoms with imperfect precision, the resulting electron density can be compatible with multiple models of motion. Diffuse X-ray scattering can reduce this degeneracy by reporting on correlated atomic displacements. Although recent technological advances are increasing the potential to accurately measure diffuse scattering, computational modeling and validation tools are still needed to quantify the agreement between experimental data and different parameterizations of crystalline disorder. A new tool, phenix.diffuse, addresses this need by employing Guinier'smore » equation to calculate diffuse scattering from Protein Data Bank (PDB)-formatted structural ensembles. As an example case, phenix.diffuse is applied to translation–libration–screw (TLS) refinement, which models rigid-body displacement for segments of the macromolecule. To enable the calculation of diffuse scattering from TLS-refined structures, phenix.tls_as_xyz builds multi-model PDB files that sample the underlying T, L and S tensors. In the glycerophosphodiesterase GpdQ, alternative TLS-group partitioning and different motional correlations between groups yield markedly dissimilar diffuse scattering maps with distinct implications for molecular mechanism and allostery. In addition, these methods demonstrate how, in principle, X-ray diffuse scattering could extend macromolecular structural refinement, validation and analysis.« less
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Permanent 3D laser scanning system for an active landslide in Gresten (Austria)
NASA Astrophysics Data System (ADS)
Canli, Ekrem; Höfle, Bernhard; Hämmerle, Martin; Benni, Thiebes; Glade, Thomas
2015-04-01
Terrestrial laser scanners (TLS) have widely been used for high spatial resolution data acquisition of topographic features and geomorphic analyses. Existing applications encompass different landslides including rockfall, translational or rotational landslides, debris flow, but also coastal cliff erosion, braided river evolution or river bank erosion. The main advantages of TLS are (a) the high spatial sampling density of XYZ-measurements (e.g. 1 point every 2-3 mm at 10 m distance), particularly in comparison with the low data density monitoring techniques such as GNSS or total stations, (b) the millimeter accuracy and precision of the range measurement to centimeter accuracy of the final DEM, and (c) the highly dense area-wide scanning that enables to look through vegetation and to measure bare ground. One of its main constraints is the temporal resolution of acquired data due to labor costs and time requirements for field campaigns. Thus, repetition measurements are generally performed only episodically. However, for an increased scientific understanding of the processes as well as for early warning purposes, we present a novel permanent 3D monitoring setup to increase the temporal resolution of TLS measurements. This accounts for different potential monitoring deliverables such as volumetric calculations, spatio-temporal movement patterns, predictions and even alerting. This system was installed at the active Salcher landslide in Gresten (Austria) that is situated in the transition zone of the Gresten Klippenbelt (Helvetic) and the Flyschzone (Penninic). The characteristic lithofacies are the Gresten Beds of Early Jurassic age that are covered by a sequence of marly and silty beds with intercalated sandy limestones. Permanent data acquisition can be implemented into our workflow with any long-range TLS system offering fully automated capturing. We utilize an Optech ILRIS-3D scanner. The time interval between two scans is currently set to 24 hours, but can be set as low as a full scan requires. The field of view (FoV) from the fixed scanner position covers most of the active landslide surface (with a maximum distance of 300 m). To initiate the scan acquisition, command line tools are run automatically on an attached notebook computer in the given time interval. The acquired 3D point cloud (including signal intensity recordings) are then sent to a server via automatic internet transfer. Each new point cloud is automatically compared with an initial 'zero' survey. Furthermore, highly detailed reference surveys are performed several times per year with the most recent Riegl VZ-6000 scanner from multiple scan positions in order to provide high quality independent ground truth. The change detection is carried out by fully automatic batch processing without the need for manual interaction. One of the applied change detection approaches is the M3C2 algorithm (Multiscale Model to Model Cloud Comparison) which is available as open source software. The field site in Gresten also contains different other monitoring systems such as inclinometers and piezometers that complement in the interpretation of the obtained TLS data. Future analysis will include the combination of surface movement with subsurface hydrology as well as with climatic data obtained from an on-site climatic station.
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NASA Astrophysics Data System (ADS)
Storesund, R.; Chin, A.; Florsheim, J. L.; O'Hirok, L.; Williams, K.; Austin, K. E.
2014-12-01
Mountains areas are increasingly susceptible to wildfires because of warming climates. Although knowledge of the hydro-geomorphological impacts of wildfire has advanced in recent years, much is still unknown regarding how environmental fluxes move through burned watersheds. Because of the loss of vegetation and hydrophobic soils, flash floods often accompany elevated runoff events from burned watersheds, making direct process measurements challenging. Direct measurements are also only partly successful at capturing the spatial variations of post-fire effects. Coupled with short temporal windows for observing such responses, opportunities are often missed for collecting data needed for developing predictive models. Terrestrial LiDAR scanning (TLS) of burned areas allows detailed documentation of the post-fire topography to cm-level accuracy, providing pictures of geomorphic responses not previously possible. This paper reports a comparative study of hillslope-channel interactions, using repeat TLS, in two contrasting environments. Burned by the 2012 Waldo Canyon Fire and 2013 Springs Fire, in Colorado and California respectively, the study sites share many similarities including steep erosive slopes, small drainage areas, and step-pool channel morphologies. TLS provided a tool to test the central hypothesis that, dry ravel, distinct in the California Mediterranean environment, would prompt a greater sedimentological response from the Springs Fire compared to the Waldo Canyon Fire. At selected sites in each area, TLS documented baseline conditions immediately following the fire. Repeat scanning after major storms allowed detection of changes in the landscape. Results show a tendency for sedimentation in river channels in the study sites interacting with dry ravel on hillslopes, whereas erosion dominated the response from the Waldo Canyon Fire with an absence of dry ravel. These data provide clues to developing generalizations for post-fire effects at regional scales, which could assist with managing hazards from wildfires. TLS provides a promising tool to expand the range of studies concerning environmental responses through burned landscapes.
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Sievänen, Risto; Raumonen, Pasi; Perttunen, Jari; Nikinmaa, Eero; Kaitaniemi, Pekka
2018-05-24
Functional-structural plant models (FSPMs) allow simulation of tree crown development as the sum of modular (e.g. shoot-level) responses triggered by the local environmental conditions. The actual process of space filling by the crowns can be studied. Although the FSPM simulations are at organ scale, the data for their validation have usually been at more aggregated levels (whole-crown or whole-tree). Measurements made by terrestrial laser scanning (TLS) that have been segmented into elementary units (internodes) offer a phenotyping tool to validate the FSPM predictions at levels comparable with their detail. We demonstrate the testing of different formulations of crown development of Scots pine trees in the LIGNUM model using segmented TLS data. We made TLS measurements from four sample trees growing in a forest on a relatively poor soil from sapling size to mature stage. The TLS data were segmented into internodes. The segmentation also produced information on whether needles were present in the internode. We applied different formulations of crown development (flushing of buds and length of growth of new internodes) in LIGNUM. We optimized the parameter values of each formulation using genetic algorithms to observe the best fit of LIGNUM simulations to the measured trees. The fitness function in the estimation combined both tree-level characteristics (e.g. tree height and crown length) and measures of crown shape (e.g. spatial distribution of needle area). Comparison of different formulations against the data indicates that the Extended Borchert-Honda model for shoot elongation works best within LIGNUM. Control of growth by local density in the crown was important for all shoot elongation formulations. Modifying the number of lateral buds as a function of local density in the crown was the best way to accomplish density control. It was demonstrated how segmented TLS data can be used in the context of a shoot-based model to select model components.
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Visualizing lava flow interiors with LiDAR
NASA Astrophysics Data System (ADS)
Whelley, P.; Garry, W. B.; Young, K.; Kruse, S.; Esmaeili, S.; Bell, E.; Paylor, R.
2017-12-01
Lava tube caves provide unprecedented access to the shallow (meters to tens of meters) interiors of lava flows. Surveying tube geometry and morphology can illuminate lava flow thermal history and emplacement mechanics. In an expedition to Lava Beds National Monument, California, our team collected ultra-high-resolution (< 10 cm) topography from the interiors of four lava tubes using a terrestrial laser scanner (TLS). More than 78 GB of point data (latitude, longitude, elevation) of the surface and interiors of Hercules Leg, Skull, Valentine and, Indian Well Caves were collected. For example, our point cloud for 50 m of Valentine Cave contains 748 million points (interior: 478 million, exterior: 270 million) from 28 TLS scans. The tubes visited range in diameter from < 1 m to > 10 m, and from 1 m to < 20 m of overburden. The interior morphology of the tubes remain pristine (i.e., un-eroded) after more than 10,000 years. The TLS data illuminate fresh-looking lava tube flow features (e.g., lava-coils, pillars, benches, and ropes) and post-emplacement deformation features (e.g., fractures, lava-drips, molded ceilings, and drop-blocks). Furthermore, the data provide context for geochemical and geophysical observations made in conjunction with the TLS survey. Lava tube morphology, observable in the TLS data, informs each tube's emplacement history. Skull cave is the largest ( 20 m in diameter) requiring a comparatively high lava discharge rate and suggesting this cave formed by roofing over a lava channel. In contrast, Valentine, Hercules Leg, and Indian Well Caves are narrower, (1 to 4 m) and have many branches, some of which rejoin the "main passage", suggesting they formed by developing a network of pathways within the lava flow. We will showcase video fly-throughs for these lava tubes, plus manipulable point clouds. The interactive eLighning presentation will encourage hands-on exploration of these unique data. We will guide them on a tour of the underground to discover and compare different morphologies of lava tubes.
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Searching for Reduced Carbon on the Surface of Mars: The SAM Combustion Experiment
NASA Technical Reports Server (NTRS)
Stern, J. C.; Malespin, C. A.; Mahaffy, P. R.; Webster, C. R.; Eigenbrode, J. L.; Archer, P. D., Jr.; Brunner, A. E.; Freissinet, C.; Franz, H. B.; Glavin, D. P.;
2014-01-01
The search for reduced carbon has been a major focus of past and present missions to Mars. Thermal evolved gas analysis was used by the Viking and Phoenix landers and is currently in use by the Sample Analysis at Mars (SAM) instrument suite on the Mars Science Laboratory (MSL) to characterize volatiles evolved from solid samples, including those associated with reduced organic species. SAM has the additional capability to perform a combustion experiment, in which a sample of Mars regolith is heated in the presence of oxygen and the composition of the evolved gases is measured using quadrupole mass spectrometry (QMS) and tunable laser spectrometry (TLS) [1]. Organics detection on the Martian surface has been complicated by oxidation and destruction during heating by soil oxidants [2], including oxychlorine compounds, and terrestrial organics in the SAM background contributed by one of the SAM wet chemistry reagents MTBSTFA (N-Methyl-N-tertbutyldimethylsilyl- trifluoroacetamide) [3,4]. Thermal Evolved Gas Analysis (TEGA) results from Phoenix show a mid temperature CO2 release between 400 C - 680 C speculated to be carbonate, CO2 adsorbed to grains, or combustion of organics by soil oxidants [5]. Low temperature CO2 evolutions (approx. 200 C - 400 C) were also present at all three sites in Gale Crater where SAM Evolved Gas Analysis (EGA) was performed, and potential sources include combustion of terrestrial organics from SAM, as well as combustion and/or decarboxylation either indigenous martian or exogenous organic carbon [4,6]. By performing an experiment to intentionally combust all reduced materials in the sample, we hope to compare the bulk abundance of CO2 and other oxidized species evolved by combustion to that evolved during an EGA experiment to estimate how much CO2 could be contributed by reduced carbon sources. In addition, C, O, and H isotopic compositions of CO2 and H2O measured by TLS can contribute information regarding the potential sources of these volatiles.
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Urzhumtsev, Alexandre; Afonine, Pavel V.; Van Benschoten, Andrew H.; ...
2016-08-31
Researcher feedback has indicated that in Urzhumtsevet al.[(2015)Acta Cryst.D71, 1668–1683] clarification of key parts of the algorithm for interpretation of TLS matrices in terms of elemental atomic motions and corresponding ensembles of atomic models is required. Also, it has been brought to the attention of the authors that the incorrect PDB code was reported for one of test models. Lastly, these issues are addressed in this article.
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2011-09-15
Networks (VPNs), TLS protects massive amounts of private information, and protecting this data from Man-in-the-Middle ( MitM ) attacks is imperative to...keeping the information secure. This thesis illustrates how an attacker can successfully perform a MitM attack against a TLS connection without alerting...mechanism a user has against a MitM . The goal for this research is to determine if a time threshold exists that can indicate the presence of a MitM in this
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Bose, Arindam; Millsap, Amy D; DeLeon, Arnie; Rizzo, Carmelo J; Basu, Ashis K
2016-09-19
Translesion synthesis (TLS) of the N(2)-2'-deoxyguanosine (dG-N(2)-IQ) adduct of the carcinogen 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) was investigated in human embryonic kidney 293T cells by replicating plasmid constructs in which the adduct was individually placed at each guanine (G1, G2, or G3) of the NarI sequence (5'-CG1G2CG3CC-3'). TLS efficiency was 38%, 29%, and 25% for the dG-N(2)-IQ located at G1, G2, and G3, respectively, which suggests that dG-N(2)-IQ is bypassed more efficiently by one or more DNA polymerases at G1 than at either G2 or G3. TLS efficiency was decreased 8-35% in cells with knockdown of pol η, pol κ, pol ι, pol ζ, or Rev1. Up to 75% reduction in TLS occurred when pol η, pol ζ, and Rev1 were simultaneously knocked down, suggesting that these three polymerases play important roles in dG-N(2)-IQ bypass. Mutation frequencies (MFs) of dG-N(2)-IQ at G1, G2, and G3 were 23%, 17%, and 11%, respectively, exhibiting a completely reverse trend of the previously reported MF of the C8-dG adduct of IQ (dG-C8-IQ), which is most mutagenic at G3 ( ( 2015 ) Nucleic Acids Res. 43 , 8340 - 8351 ). The major type of mutation induced by dG-N(2)-IQ was targeted G → T, as was reported for dG-C8-IQ. In each site, knockdown of pol κ resulted in an increase in MF, whereas MF was reduced when pol η, pol ι, pol ζ, or Rev1 was knocked down. The reduction in MF was most pronounced when pol η, pol ζ, and Rev1 were simultaneously knocked down and especially when the adduct was located at G3, where MF was reduced by 90%. We conclude that pol κ predominantly performs error-free TLS of the dG-N(2)-IQ adduct, whereas pols η, pol ζ, and Rev1 cooperatively carry out the error-prone TLS. However, in vitro experiments using yeast pol ζ and κ showed that the former was inefficient in full-length primer extension on dG-N(2)-IQ templates, whereas the latter was efficient in both error-free and error-prone extensions. We believe that the observed differences between the in vitro experiments using purified DNA polymerases, and the cellular results may arise from several factors including the crucial roles played by the accessory proteins in TLS.
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2016-01-01
Translesion synthesis (TLS) of the N2-2′-deoxyguanosine (dG-N2-IQ) adduct of the carcinogen 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) was investigated in human embryonic kidney 293T cells by replicating plasmid constructs in which the adduct was individually placed at each guanine (G1, G2, or G3) of the NarI sequence (5′-CG1G2CG3CC-3′). TLS efficiency was 38%, 29%, and 25% for the dG-N2-IQ located at G1, G2, and G3, respectively, which suggests that dG-N2-IQ is bypassed more efficiently by one or more DNA polymerases at G1 than at either G2 or G3. TLS efficiency was decreased 8–35% in cells with knockdown of pol η, pol κ, pol ι, pol ζ, or Rev1. Up to 75% reduction in TLS occurred when pol η, pol ζ, and Rev1 were simultaneously knocked down, suggesting that these three polymerases play important roles in dG-N2-IQ bypass. Mutation frequencies (MFs) of dG-N2-IQ at G1, G2, and G3 were 23%, 17%, and 11%, respectively, exhibiting a completely reverse trend of the previously reported MF of the C8-dG adduct of IQ (dG-C8-IQ), which is most mutagenic at G3 ((2015) Nucleic Acids Res.43, 8340−835126220181). The major type of mutation induced by dG-N2-IQ was targeted G → T, as was reported for dG-C8-IQ. In each site, knockdown of pol κ resulted in an increase in MF, whereas MF was reduced when pol η, pol ι, pol ζ, or Rev1 was knocked down. The reduction in MF was most pronounced when pol η, pol ζ, and Rev1 were simultaneously knocked down and especially when the adduct was located at G3, where MF was reduced by 90%. We conclude that pol κ predominantly performs error-free TLS of the dG-N2-IQ adduct, whereas pols η, pol ζ, and Rev1 cooperatively carry out the error-prone TLS. However, in vitro experiments using yeast pol ζ and κ showed that the former was inefficient in full-length primer extension on dG-N2-IQ templates, whereas the latter was efficient in both error-free and error-prone extensions. We believe that the observed differences between the in vitro experiments using purified DNA polymerases, and the cellular results may arise from several factors including the crucial roles played by the accessory proteins in TLS. PMID:27490094
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Why the Eurocontrol Safety Regulation Commission Policy on Safety Nets and Risk Assessment is Wrong
NASA Astrophysics Data System (ADS)
Brooker, Peter
2004-05-01
Current Eurocontrol Safety Regulation Commission (SRC) policy says that the Air Traffic Management (ATM) system (including safety minima) must be demonstrated through risk assessments to meet the Target Level of Safety (TLS) without needing to take safety nets (such as Short Term Conflict Alert) into account. This policy is wrong. The policy is invalid because it does not build rationally and consistently from ATM's firm foundations of TLS and hazard analysis. The policy is bad because it would tend to retard safety improvements. Safety net policy must rest on a clear and rational treatment of integrated ATM system safety defences. A new safety net policy, appropriate to safe ATM system improvements, is needed, which recognizes that safety nets are an integrated part of ATM system defences. The effects of safety nets in reducing deaths from mid-air collisions should be fully included in hazard analysis and safety audits in the context of the TLS for total system design.
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Coordinating DNA polymerase traffic during high and low fidelity synthesis.
Sutton, Mark D
2010-05-01
With the discovery that organisms possess multiple DNA polymerases (Pols) displaying different fidelities, processivities, and activities came the realization that mechanisms must exist to manage the actions of these diverse enzymes to prevent gratuitous mutations. Although many of the Pols encoded by most organisms are largely accurate, and participate in DNA replication and DNA repair, a sizeable fraction display a reduced fidelity, and act to catalyze potentially error-prone translesion DNA synthesis (TLS) past lesions that persist in the DNA. Striking the proper balance between use of these different enzymes during DNA replication, DNA repair, and TLS is essential for ensuring accurate duplication of the cell's genome. This review highlights mechanisms that organisms utilize to manage the actions of their different Pols. A particular emphasis is placed on discussion of current models for how different Pols switch places with each other at the replication fork during high fidelity replication and potentially error-pone TLS. Copyright (c) 2010 Elsevier B.V. All rights reserved.
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Assessing Similarity Among Individual Tumor Size Lesion Dynamics: The CICIL Methodology
Girard, Pascal; Ioannou, Konstantinos; Klinkhardt, Ute; Munafo, Alain
2018-01-01
Mathematical models of tumor dynamics generally omit information on individual target lesions (iTLs), and consider the most important variable to be the sum of tumor sizes (TS). However, differences in lesion dynamics might be predictive of tumor progression. To exploit this information, we have developed a novel and flexible approach for the non‐parametric analysis of iTLs, which integrates knowledge from signal processing and machine learning. We called this new methodology ClassIfication Clustering of Individual Lesions (CICIL). We used CICIL to assess similarities among the TS dynamics of 3,223 iTLs measured in 1,056 patients with metastatic colorectal cancer treated with cetuximab combined with irinotecan, in two phase II studies. We mainly observed similar dynamics among lesions within the same tumor site classification. In contrast, lesions in anatomic locations with different features showed different dynamics in about 35% of patients. The CICIL methodology has also been implemented in a user‐friendly and efficient Java‐based framework. PMID:29388396
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Mind the gap: implementation challenges break the link between HIV/AIDS research and practice.
MacCarthy, Sarah; Reisner, Sari; Hoffmann, Michael; Perez-Brumer, Amaya; Silva-Santisteban, Alfonso; Nunn, Amy; Bastos, Leonardo; Vasconcellos, Mauricio Teixeira Leite de; Kerr, Ligia; Bastos, Francisco Inácio; Dourado, Inês
2016-11-03
Sampling strategies such as respondent-driven sampling (RDS) and time-location sampling (TLS) offer unique opportunities to access key populations such as men who have sex with men (MSM) and transgender women. Limited work has assessed implementation challenges of these methods. Overcoming implementation challenges can improve research quality and increase uptake of HIV services among key populations. Drawing from studies using RDS in Brazil and TLS in Peru, we summarize challenges encountered in the field and potential strategies to address them. In Brazil, study site selection, cash incentives, and seed selection challenged RDS implementation with MSM. In Peru, expansive geography, safety concerns, and time required for study participation complicated TLS implementation with MSM and transgender women. Formative research, meaningful participation of key populations across stages of research, and transparency in study design are needed to link HIV/AIDS research and practice. Addressing implementation challenges can close gaps in accessing services among those most burdened by the epidemic.
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Mind the gap: implementation challenges break the link between HIV/AIDS research and practice
MacCarthy, Sarah; Reisner, Sari; Hoffmann, Michael; Perez-Brumer, Amaya; Silva-Santisteban, Alfonso; Nunn, Amy; Bastos, Leonardo; de Vasconcellos, Mauricio Teixeira Leite; Kerr, Ligia; Bastos, Francisco Inácio; Dourado, Inês
2018-01-01
Sampling strategies such as respondent-driven sampling (RDS) and time-location sampling (TLS) offer unique opportunities to access key populations such as men who have sex with men (MSM) and transgender women. Limited work has assessed implementation challenges of these methods. Overcoming implementation challenges can improve research quality and increase uptake of HIV services among key populations. Drawing from studies using RDS in Brazil and TLS in Peru, we summarize challenges encountered in the field and potential strategies to address them. In Brazil, study site selection, cash incentives, and seed selection challenged RDS implementation with MSM. In Peru, expansive geography, safety concerns, and time required for study participation complicated TLS implementation with MSM and transgender women. Formative research, meaningful participation of key populations across stages of research, and transparency in study design are needed to link HIV/AIDS research and practice. Addressing implementation challenges can close gaps in accessing services among those most burdened by the epidemic. PMID:27828609
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Kendall, Carl; Kerr, Ligia R F S; Gondim, Rogerio C; Werneck, Guilherme L; Macena, Raimunda Hermelinda Maia; Pontes, Marta Kerr; Johnston, Lisa G; Sabin, Keith; McFarland, Willi
2008-07-01
Obtaining samples of populations at risk for HIV challenges surveillance, prevention planning, and evaluation. Methods used include snowball sampling, time location sampling (TLS), and respondent-driven sampling (RDS). Few studies have made side-by-side comparisons to assess their relative advantages. We compared snowball, TLS, and RDS surveys of men who have sex with men (MSM) in Forteleza, Brazil, with a focus on the socio-economic status (SES) and risk behaviors of the samples to each other, to known AIDS cases and to the general population. RDS produced a sample with wider inclusion of lower SES than snowball sampling or TLS-a finding of health significance given the majority of AIDS cases reported among MSM in the state were low SES. RDS also achieved the sample size faster and at lower cost. For reasons of inclusion and cost-efficiency, RDS is the sampling methodology of choice for HIV surveillance of MSM in Fortaleza.
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Unmanned air vehicle: autonomous takeoff and landing
NASA Astrophysics Data System (ADS)
Lim, K. L.; Gitano-Briggs, Horizon Walker
2010-03-01
UAVs are increasing in popularity and sophistication due to the demonstrated performance which cannot be attained by manned aircraft1. These developments have been made possible by development of sensors, instrumentation, telemetry and controls during the last few decades. UAVs are now common in areas such as aerial observation and as communication relays3. Most UAVs, however, are still flown by a human pilot via remote control from a ground station. Even the existing autonomous UAVs often require a human pilot to handle the most difficult tasks of take off and landing2 (TOL). This is mainly because the navigation of the airplane requires observation, constant situational assessment and hours of experience from the pilot himself4. Therefore, an autonomous takeoff and landing system (TLS) for UAVs using a few practical design rules with various sensors, instrumentation, etc has been developed. This paper details the design and modeling of the UAV TLS. The model indicates that the UAV's TLS shows promising stability.
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Unmanned air vehicle: autonomous takeoff and landing
NASA Astrophysics Data System (ADS)
Lim, K. L.; Gitano-Briggs, Horizon Walker
2009-12-01
UAVs are increasing in popularity and sophistication due to the demonstrated performance which cannot be attained by manned aircraft1. These developments have been made possible by development of sensors, instrumentation, telemetry and controls during the last few decades. UAVs are now common in areas such as aerial observation and as communication relays3. Most UAVs, however, are still flown by a human pilot via remote control from a ground station. Even the existing autonomous UAVs often require a human pilot to handle the most difficult tasks of take off and landing2 (TOL). This is mainly because the navigation of the airplane requires observation, constant situational assessment and hours of experience from the pilot himself4. Therefore, an autonomous takeoff and landing system (TLS) for UAVs using a few practical design rules with various sensors, instrumentation, etc has been developed. This paper details the design and modeling of the UAV TLS. The model indicates that the UAV's TLS shows promising stability.
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The role of the medial temporal limbic system in processing emotions in voice and music.
Frühholz, Sascha; Trost, Wiebke; Grandjean, Didier
2014-12-01
Subcortical brain structures of the limbic system, such as the amygdala, are thought to decode the emotional value of sensory information. Recent neuroimaging studies, as well as lesion studies in patients, have shown that the amygdala is sensitive to emotions in voice and music. Similarly, the hippocampus, another part of the temporal limbic system (TLS), is responsive to vocal and musical emotions, but its specific roles in emotional processing from music and especially from voices have been largely neglected. Here we review recent research on vocal and musical emotions, and outline commonalities and differences in the neural processing of emotions in the TLS in terms of emotional valence, emotional intensity and arousal, as well as in terms of acoustic and structural features of voices and music. We summarize the findings in a neural framework including several subcortical and cortical functional pathways between the auditory system and the TLS. This framework proposes that some vocal expressions might already receive a fast emotional evaluation via a subcortical pathway to the amygdala, whereas cortical pathways to the TLS are thought to be equally used for vocal and musical emotions. While the amygdala might be specifically involved in a coarse decoding of the emotional value of voices and music, the hippocampus might process more complex vocal and musical emotions, and might have an important role especially for the decoding of musical emotions by providing memory-based and contextual associations. Copyright © 2014 Elsevier Ltd. All rights reserved.
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Matsuda, Daiki; Dreher, Theo W.
2007-01-01
Turnip yellow mosaic virus (TYMV) RNA directs the translation of two overlapping open reading frames. Competing models have been previously published to explain ribosome access to the downstream polyprotein cistron. The Trojan horse model, based on cell-free experiments, proposes noncanonical cap-independent initiation in which the 3′-terminal tRNA-like structure (TLS) functionally replaces initiator tRNA, and the valine bound to the TLS becomes cis-incorporated into viral protein. The initiation coupling model, based on in vivo expression and ribosome toe-printing studies, proposes a variation of canonical leaky scanning. Here, we have re-examined the wheat germ extract experiments that led to the Trojan horse model, incorporating a variety of controls. We report that (1) translation in vitro from the polyprotein AUG of TYMV RNA is unchanged after removal of the 3′ TLS but is stimulated by the presence of a 5′-cap; (2) the presence of free cap analog or edeine (which interferes with initiation at the ribosomal P site and its tRNAi Met involvement) inhibits translation from the polyprotein AUG; (3) the toe-prints of immediately post-initiation ribosomes on TYMV RNA are similar with and without an intact TLS; and (4) significant deacylation of valyl-TYMV RNA in wheat germ extract can complicate the detection of cis-incorporation. These results favor the initiation coupling model. PMID:17095542
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Comparison of Low Cost Photogrammetric Survey with Tls and Leica Pegasus Backpack 3d Modelss
NASA Astrophysics Data System (ADS)
Masiero, A.; Fissore, F.; Guarnieri, A.; Piragnolo, M.; Vettore, A.
2017-11-01
This paper considers Leica backpack and photogrammetric surveys of a mediaeval bastion in Padua, Italy. Furhtermore, terrestrial laser scanning (TLS) survey is considered in order to provide a state of the art reconstruction of the bastion. Despite control points are typically used to avoid deformations in photogrammetric surveys and ensure correct scaling of the reconstruction, in this paper a different approach is considered: this work is part of a project aiming at the development of a system exploiting ultra-wide band (UWB) devices to provide correct scaling of the reconstruction. In particular, low cost Pozyx UWB devices are used to estimate camera positions during image acquisitions. Then, in order to obtain a metric reconstruction, scale factor in the photogrammetric survey is estimated by comparing camera positions obtained from UWB measurements with those obtained from photogrammetric reconstruction. Compared with the TLS survey, the considered photogrammetric model of the bastion results in a RMSE of 21.9cm, average error 13.4cm, and standard deviation 13.5cm. Excluding the final part of the bastion left wing, where the presence of several poles make reconstruction more difficult, (RMSE) fitting error is 17.3cm, average error 11.5cm, and standard deviation 9.5cm. Instead, comparison of Leica backpack and TLS surveys leads to an average error of 4.7cm and standard deviation 0.6cm (4.2cm and 0.3cm, respectively, by excluding the final part of the left wing).
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Zhu, Yali; Song, Liping; Stroud, Jason; Parris, Deborah S
2008-01-01
Results suggest a high probability that abasic (AP) sites occur at least once per herpes simplex virus type 1 (HSV-1) genome. The parameters that control the ability of HSV-1 DNA polymerase (pol) to engage in AP translesion synthesis (TLS) were examined because AP lesions could influence the completion and fidelity of viral DNA synthesis. Pre-steady-state kinetic experiments demonstrated that wildtype (WT) and exonuclease-deficient (exo-) pol could incorporate opposite an AP lesion, but full TLS required absence of exo function. Virtually all of the WT pol was bound at the exo site to AP-containing primer-templates (P/Ts) at equilibrium, and the pre-steady-state rate of excision by WT pol was higher on AP-containing than on matched DNA. However, several factors influencing polymerization work synergistically with exo activity to prevent HSV-1 pol from engaging in TLS. Although the pre-steady-state catalytic rate constant for insertion of dATP opposite a T or AP site was similar, ground-state-binding affinity of dATP for insertion opposite an AP site was reduced 3-9-fold. Single-turnover running-start experiments demonstrated a reduced proportion of P/Ts extended to the AP site compared to the preceding site during processive synthesis by WT or exo- pol. Only the exo- pol engaged in TLS, though inefficiently and without burst kinetics, suggesting a much slower rate-limiting step for extension beyond the AP site.
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Achieving Passive Localization with Traffic Light Schedules in Urban Road Sensor Networks
Niu, Qiang; Yang, Xu; Gao, Shouwan; Chen, Pengpeng; Chan, Shibing
2016-01-01
Localization is crucial for the monitoring applications of cities, such as road monitoring, environment surveillance, vehicle tracking, etc. In urban road sensor networks, sensors are often sparely deployed due to the hardware cost. Under this sparse deployment, sensors cannot communicate with each other via ranging hardware or one-hop connectivity, rendering the existing localization solutions ineffective. To address this issue, this paper proposes a novel Traffic Lights Schedule-based localization algorithm (TLS), which is built on the fact that vehicles move through the intersection with a known traffic light schedule. We can first obtain the law by binary vehicle detection time stamps and describe the law as a matrix, called a detection matrix. At the same time, we can also use the known traffic light information to construct the matrices, which can be formed as a collection called a known matrix collection. The detection matrix is then matched in the known matrix collection for identifying where sensors are located on urban roads. We evaluate our algorithm by extensive simulation. The results show that the localization accuracy of intersection sensors can reach more than 90%. In addition, we compare it with a state-of-the-art algorithm and prove that it has a wider operational region. PMID:27735871
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Disclosure of Temporary Exposures as Permanent Website Applications through the Patrimonial Survey
NASA Astrophysics Data System (ADS)
Corso, Juan; Garcia-Almirall, Pilar; López, Daniel; Casals, Jordi
2017-10-01
In a context of web application in the field of the dissemination of cultural heritage, this article advances in a methodology for the optimization of points clouds obtained through the technology of Laser Scanner (TLS). Identifying the potential of TLS surveys as interactive models that allow the cultural heritage to be perpetuated over time. This point cloud optimization is developed with free software, focusing its exploitation on an interactive web application, which has made it possible to convert two temporary museum exhibitions into permanent exhibitions in virtual format. Developed in conjunction with the Museu d’Història de la Ciutat de Barcelona. The case study focuses on the Palau Reial Major, Gothic style, formed by the chapel of Santa Àgata (built in 1302, on the Roman wall) and Saló del Tinell (built between 1359 and 1370, on the Roman remains). Located in the Plaça del Rei, in the old town of Barcelona. In this application is very important the visual impact, it requires to represent a faithful model of the interior of the building, from the point of view of color and lighting, avoiding the transparencies of the model through a dense cloud of dots, without occlusions, this requires a great quantity of positions. This implies a clear methodology, using different techniques such as photographic proyection, given the complexity of lighting of the building, as much for the artificial lighting as for the lighting of the stained glass. In this process, there were 84 positions that provide greater density of points, which are optimized with free programs. The temporary exhibitions of the case studies, elaborated by the MUHBA in the Saló del Tinell are: “Indianas, 1736-1847. The origins of industrial Barcelona” exposed from May 19, 2012 to March 3, 2013 and “El Món del 1714” exposed from December 20 to September 28, 2014. Both are based on a tour with showcases and exhibitors where different objects of a museum character are shown, such as looms, cloths, dresses, books, among others, accompanied by panels with texts and images that contain the information that each exhibition shows. Virtual applications allow such temporary exposures to become an interactive model, in which information can be permanently consulted. A virtual tour where the user can interact with the information panels and observe in detail the different objects of the exhibition. The results of this work manage to generate a powerful mechanism of diffusion and approximation to the society of the cultural heritage that, otherwise, as a whole as exhibition would disappear.
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Proteomic differences between native and tissue-engineered tendon and ligament.
Kharaz, Yalda A; Tew, Simon R; Peffers, Mandy; Canty-Laird, Elizabeth G; Comerford, Eithne
2016-05-01
Tendons and ligaments (T/Ls) play key roles in the musculoskeletal system, but they are susceptible to traumatic or age-related rupture, leading to severe morbidity as well as increased susceptibility to degenerative joint diseases such as osteoarthritis. Tissue engineering represents an attractive therapeutic approach to treating T/L injury but it is hampered by our poor understanding of the defining characteristics of the two tissues. The present study aimed to determine differences in the proteomic profile between native T/Ls and tissue engineered (TE) T/L constructs. The canine long digital extensor tendon and anterior cruciate ligament were analyzed along with 3D TE fibrin-based constructs created from their cells. Native tendon and ligament differed in their content of key structural proteins, with the ligament being more abundant in fibrocartilaginous proteins. 3D T/L TE constructs contained less extracellular matrix (ECM) proteins and had a greater proportion of cellular-associated proteins than native tissue, corresponding to their low collagen and high DNA content. Constructs were able to recapitulate native T/L tissue characteristics particularly with regard to ECM proteins. However, 3D T/L TE constructs had similar ECM and cellular protein compositions indicating that cell source may not be an important factor for T/L tissue engineering. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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NASA Astrophysics Data System (ADS)
Lo Brutto, M.; Sciortino, R.; Garraffa, A.
2017-02-01
Digital documentation and 3D modelling of archaeological sites are important for understanding, definition and recognition of the values of the sites and of the archaeological finds. The most part of archaeological sites are outdoor location, but a cover to preserve the ruins protects often parts of the sites. The possibility to acquire data with different techniques and merge them by using a single reference system allows creating multi-parties models in which 3D representations of the individual objects can be inserted. The paper presents the results of a recent study carried out by Geomatics Laboratory of University of Palermo for the digital documentation and 3D modelling of Eraclea Minoa archaeological site. This site is located near Agrigento, in the south of Sicily (Italy) and is one of the most famous ancient Greek colonies of Sicily. The paper presents the results of the integration of different data source to survey the Eraclea Minoa archaeological site. The application of two highly versatile recording systems, the TLS (Terrestrial Laser Scanning) and the RPAS (Remotely Piloted Aircraft System), allowed the Eraclea Minoa site to be documented in high resolution and with high accuracy. The integration of the two techniques has demonstrated the possibility to obtain high quality and accurate 3D models in archaeological survey.
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A monitoring/auditing mechanism for SSL/TLS secured service sessions in Health Care Applications.
Kavadias, C D; Koutsopoulos, K A; Vlachos, M P; Bourka, A; Kollias, V; Stassinopoulos, G
2003-01-01
This paper analyzes the SSL/TLS procedures and defines the functionality of a monitoring/auditing entity running in parallel with the protocol, which is decoding, checking the certificate and permitting session establishment based on the decoded certificate information, the network addresses of the endpoints and a predefined access list. Finally, this paper discusses how such a facility can be used for detection impersonation attempts in Health Care applications and provides case studies to show the effectiveness and applicability of the proposed method.
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Improved superconducting qubit coherence using titanium nitride
NASA Astrophysics Data System (ADS)
Chang, Josephine B.; Vissers, Michael R.; Córcoles, Antonio D.; Sandberg, Martin; Gao, Jiansong; Abraham, David W.; Chow, Jerry M.; Gambetta, Jay M.; Beth Rothwell, Mary; Keefe, George A.; Steffen, Matthias; Pappas, David P.
2013-07-01
We demonstrate enhanced relaxation and dephasing times of transmon qubits, up to ˜60 μs, by fabricating the interdigitated shunting capacitors using titanium nitride (TiN). Compared to qubits made with lift-off aluminum deposited simultaneously with the Josephson junction, this represents as much as a six-fold improvement and provides evidence that surface losses from two-level system (TLS) defects residing at or near interfaces contribute to decoherence. Concurrently, we observe an anomalous temperature dependent frequency shift of TiN resonators, which is inconsistent with the predicted TLS model.
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NASA Astrophysics Data System (ADS)
Muzylev, Eugene; Startseva, Zoya; Uspensky, Alexander; Volkova, Elena; Uspensky, Sergey
2014-05-01
At present physical-mathematical modeling processes of water and heat exchange between vegetation covered land surfaces and atmosphere is the most appropriate method to describe peculiarities of water and heat regime formation for large territories. The developed model of such processes (Land Surface Model, LSM) is intended for calculation evaporation, transpiration by vegetation, soil water content and other water and heat regime characteristics, as well as distributions of the soil temperature and humidity in depth utilizing remote sensing data from satellites on land surface and meteorological conditions. The model parameters and input variables are the soil and vegetation characteristics and the meteorological characteristics, correspondingly. Their values have been determined from ground-based observations or satellite-based measurements by radiometers AVHRR/NOAA, MODIS/EOS Terra and Aqua, SEVIRI/Meteosat-9, -10. The case study has been carried out for the part of the agricultural Central Black Earth region with coordinates 49.5 deg. - 54 deg. N, 31 deg. - 43 deg. E and a total area of 227,300 km2 located in the steppe-forest zone of the European Russia for years 2009-2012 vegetation seasons. From AVHRR data there have been derived the estimates of three types of land surface temperature (LST): land surface skin temperature Tsg, air-foliage temperature Ta and efficient radiation temperature Ts.eff, emissivity E, normalized vegetation index NDVI, vegetation cover fraction B, leaf area index LAI, cloudiness and precipitation. From MODIS data the estimates of LST Tls, E, NDVI and LAI have been obtained. The SEVIRI data have been used to build the estimates of Tls, Ta, E, LAI and precipitation. Previously developed method and technology of above AVHRR-derived estimates have been improved and adapted to the study area. To check the reliability of the Ts.eff and Ta estimations for named seasons the error statistics of their definitions has been analyzed through comparison with data of observations at agricultural meteorological stations of the study region. The mentioned MODIS-based remote sensing products for the same vegetation seasons have been built using data downloaded from the website LP DAAC (NASA). Reliability of the MODIS-derived Tls estimates have been confirmed by results of comparison with similar estimates from synchronous AVHRR, SEVIRI and ground-based data. To retrieve Tls and E from SEVIRI data at daylight and nighttime there have been developed the method and technology of thematic processing these data in IR channels NN 9, 10 (10.8 and 12.0 nm) at three successive times under cloud-free conditions without using exact values of E. This technology has been also adapted to the study area. Analysis of reliability of Tls estimation have been carried out through comparing with synchronous SEVIRI-derived Tls estimates obtained at Land Surface Analysis Satellite Applications Facility (LSA SAF, Lisbon, Portugal) and MODIS-derived Tls estimates. When the first comparison daily - or monthly-averaged values of RMS deviation have not been exceeded 2 deg. C for various dates and months during years 2009-2012 vegetation seasons. RMS deviation of Tls(SEVIRI) from Tls(MODIS) has been in the range of 1.0-3.0 deg. C. The method and technology have been also developed and tested to define Ta values from SEVIRI data at daylight and nighttime. This method is based on using satellite-derived estimates of Tls and regression relationship between Tls and ground-measured values of Ta. Comparison of satellite-based Ta estimates with data of synchronous standard term ground-based observations at the network of meteorological stations of the study area for summer periods of 2009-2012 has given RMS deviation values in the range of 1.8-3.0 deg. C. Formed archive of satellite products has been also supplemented with array of LAI estimates retrieved from SEVIRI data at LSA SAF for the study area and growing seasons 2011-2012. The possibility is shown to use the developed Multi Threshold Method (MTM) for generating the AVHRR- and SEVIRI-based estimates of daily and monthly precipitation amounts for the region of interest The MTM provides the cloud detection and identification of cloud types, estimation of the maximum liquid water content and cloud layer water content, allocation of precipitation zones and determination of instantaneous maximum of precipitation intensities in the pixel range around the clock throughout the year independently of the land surface type. In developing procedures of utilizing satellite estimates of precipitation during the vegetation season in the model there have been built up algorithms and programs of transition from estimating the rainfall intensity to assessment of their daily values. The comparison of the daily, monthly and seasonal AVHRR- and SEVIRI-derived precipitation sums with similar values retrieved from network ground-based observations using weighting interpolation procedure have been carried out. Agreement of all three evaluations is satisfactory. To assimilate remote sensing products into the model the special techniques have been developed including: 1) replacement of ground-measured model parameters LAI and B by their satellite-derived estimates. The possibility of such replacement has been confirmed through various comparisons of: a) LAI behavior for ground- and satellite-derived values; b) modeled values of Ts and Tf , satellite-based estimates of Ts.eff, Tls and Ta and ground-based measurements of LST; c) modeled and measured values of soil water content W and evapotranspiration Ev; 2) utilization of satellite-derived values of LSTs Ts.eff, Tls and Ta, and estimates of precipitation as the input model variables instead of the respective ground-measured temperatures and rainfall when assessing the accuracy of soil water content, evapotranspiration and soil temperature calculations; 3) accounting for the spatial variability of satellite-based LAI, B, LST and precipitation estimates by entering their area-distributed values into the model. For years 2009-2012 vegetation seasons there have been calculated the characteristics of the water and heat regimes of the region under investigation utilizing satellite estimates of vegetation characteristics, LST and precipitation in the model. The calculation results have shown that the discrepancies of evapotranspiration and soil water content values are within acceptable limits.
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NASA Astrophysics Data System (ADS)
Mazotti, B.; Oppikofer, T.; Riff, F.; Lambiel, C.; Loye, A.; Jaboyedoff, M.
2009-04-01
Between 1977 and 1979, important civil engineering works were made on the moraine of "Col des Gentianes", which is situated 2894 meters above the sea level in the region of Mt-Fort, Valais, Switzerland. Two cableway station arrivals, a departure station to the Mt-Fort and a restaurant were built on. This moraine was formed during the last advance of the Tortin glacier during the Little Ice Age. Since 1980, the glacier has melted dramatically and the moraine is creeping. The moraine in front of the cableway departure station to the Mt-Fort sagged by 2 to 4 meters in 30 years. A large volume of ice is still present within the moraine and melting of the ice would make its stability even more precarious. Since 2007 the moraine is monitored by terrestrial laser scanning (TLS). Two TLS campaigns were made in July and October 2008 and compared to datasets acquired in 2007. The comparison of sequential TLS point clouds enabled the detection and quantification of movements in the moraine: (1) by computing oblique (shortest) or vertical differences, (2) by creating displacement vectors and (3) by profiles across the TLS point clouds. Between July and October 2008 the Tortin glacier melted by 1 to 2.5 m and the moraine creeped in direction of the glacier by 0.25 to 0.75 m. During the same period, a landslide zone has been clearly identified downslope of the cableway departure station to the Mt-Fort. Important movements between 1.5 to 5 meters were measured on this landslide through the creation of displacement vectors. This landslide scarp is delimited by 0.5 and 1 meter downward displacements in two month. Already in 2007, a less important landslide was identified and some ice had been observed in the scarp zone. The TLS permitted to analyze the distribution of these movements on the entire moraine and not only on few measurement points like given by D-GPS. The computed TLS displacement vectors are in good agreement with annual D-GPS measurements performed on this moraine. In this study, two types of movements have been identified: (1) Superficial movements, like the landslide, and (2) general creep movements. To explain these movements, two parameters are crucial: (1) The annual melting rate of the glacier below the moraine reached up to 4 m, which has certainly an impact on the stability of the moraine (important movements observed in the landslide zone). The glacier acted as a buttress stabilizing the moraine. The observed glacier retreat and shrinkage causes the destabilisation of the moraine and finally leads to the measured surface movements. (2) The degradation of permafrost (deduced from thermal profiles acquired in a borehole in the moraine), destabilizes the moraine and causes an increase of the creep displacements measured for the whole moraine. The acceleration of the movements is now actively monitored because they can influence the stability of man-made infrastructures. This study was also the opportunity to test the ability of TLS in monitoring of glacial and periglacial landforms like moraines.
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Sherrer, Shanen M.; Taggart, David J.; Pack, Lindsey R.; Malik, Chanchal K.; Basu, Ashis K.; Suo, Zucai
2012-01-01
N- (deoxyguanosin-8-yl)-1-aminopyrene (dGAP) is the predominant nitro polyaromatic hydrocarbon product generated from the air pollutant 1-nitropyrene reacting with DNA. Previous studies have shown that dGAP induces genetic mutations in bacterial and mammalian cells. One potential source of these mutations is the error-prone bypass of dGAP lesions catalyzed by the low-fidelity Y-family DNA polymerases. To provide a comparative analysis of the mutagenic potential of the translesion DNA synthesis (TLS) of dGAP, we employed short oligonucleotide sequencing assays (SOSAs) with the model Y-family DNA polymerase from Sulfolobus solfataricus, DNA Polymerase IV (Dpo4), and the human Y-family DNA polymerases eta (hPolη), kappa (hPolκ), and iota (hPolι). Relative to undamaged DNA, all four enzymes generated far more mutations (base deletions, insertions, and substitutions) with a DNA template containing a site-specifically placed dGAP. Opposite dGAP and at an immediate downstream template position, the most frequent mutations made by the three human enzymes were base deletions and the most frequent base substitutions were dAs for all enzymes. Based on the SOSA data, Dpo4 was the least error-prone Y-family DNA polymerase among the four enzymes during the TLS of dGAP. Among the three human Y-family enzymes, hPolκ made the fewest mutations at all template positions except opposite the lesion site. hPolκ was significantly less error-prone than hPolι and hPolη during the extension of dGAP bypass products. Interestingly, the most frequent mutations created by hPolι at all template positions were base deletions. Although hRev1, the fourth human Y-family enzyme, could not extend dGAP bypass products in our standing start assays, it preferentially incorporated dCTP opposite the bulky lesion. Collectively, these mutagenic profiles suggest that hPolkk and hRev1 are the most suitable human Y-family DNA polymerases to perform TLS of dGAP in humans. PMID:22917544
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TLSpy: An Open-Source Addition to Terrestrial Lidar Workflows
NASA Astrophysics Data System (ADS)
Frechette, J. D.; Weissmann, G. S.; Wawrzyniec, T. F.
2008-12-01
Terrestrial lidar scanners (TLS) that capture three dimensional (3D) geometry with cm scale precision present many new opportunities in the Earth Sciences and related fields. However, the lack of domain specific tools impedes full and efficient utilization of the information contained in these datasets. Most processing and analysis is performed using a variety of manufacturing, surveying, airborne lidar, and GIS software. Although much overlap exists, inevitably some needs are not addressed by these applications. TLSpy provides a plugin driven framework with 3D visualization capabilities that encourages researchers to fill these gaps. The goal is to free researchers from the intellectual overhead imposed by user and data interface design, enabling rapid development of TLS specific processing and analysis algorithms. We present two plugins as examples of problems that TLSpy is being applied to. The first plugin corrects for the strong influence of target orientation on TLS measured reflectance intensities. It calculates the distribution of incidence angles and intensities in an input scan and assists the user in fitting a reflectance model to the distribution. The model is then used to normalize input intensities, minimizing the impact of surface orientation and simplifying the extraction of quantitative data from reflectance measurements. Although reasonable default models can be determined the large number of factors influencing reflectance values require that the plugin be designed for maximum flexibility, allowing the user to adjust all model parameters and define new reflectance models as needed. The second plugin helps eliminate multipath reflections from water surfaces. Characterized by a lower intensity mirror image of the subaerial bank appearing below the water surface, these reflections are a common problem in scans containing water. These erroneous reflections can be removed by manually selecting points that lie on the waterline, fitting a plane to the points, and deleting points below that plane. This plugin simplifies the process by automatically identifying waterline points using characteristic changes in geometry and intensity. Automatic identification is often faster and more reliable than manual identification, however, manual control is retained as a fallback for degenerate cases.
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Teaching Structure from Motion to Undergraduates: New Learning Module for Field Geoscience Courses
NASA Astrophysics Data System (ADS)
Pratt-Sitaula, B. A.; Shervais, K.; Crosby, C. J.; Douglas, B. J.; Crosby, B. T.; Charlevoix, D. J.
2016-12-01
With photogrammetry use expanding rapidly, it is essential to integrate these methods into undergraduate geosciences courses. The NSF-funded "GEodetic Tools for Societal Issues" (GETSI) project has recently published a module for field geoscience courses called "Analyzing High Resolution Topography with TLS and SfM" (serc.carleton.edu/getsi/teaching_materials/high-rez-topo/index.html). Structure from motion (SfM) and terrestrial laser scanning (TLS) are two valuable methods for generating high-resolution topographic landscape models. In addition to teaching the basic surveying methods, the module includes several specific applications that are tied to societally important geoscience research questions. The module goals are that students will be able to: 1) design and conduct a complex TLS and/or SfM survey to address a geologic research question; 2) articulate the societal impetus for answering a given research question; and 3) justify why TLS and/or SfM is the appropriate method in some circumstances. The module includes 6 units: Unit 1-TLS Introduction, Unit 1-SfM Introduction, Unit 2 Stratigraphic Section Survey, Unit 3 Fault Scarp Survey, Unit 4 Geomorphic Change Detection Survey, and Unit 5 Summative Assessment. One or both survey methods can be taught. Instructors choose which application/s to use from Units 2-4. Unit 5 Summative Assessment is flexibly written and can be used to assess any of the learned applications or others such as dinosaur tracks or seismic trench photomosaics. Prepared data sets are also provided for courses unable to visit the field. The included SfM learning manuals may also be of interest to researchers seeking to start with SfM; these are "SfM Guide of Instructors and Investigators" and "SfM Data Exploration and Processing Manual (Agisoft)". The module is appropriate for geoscience courses with field components such as field methods, geomorphology, geophysics, tectonics, and structural geology. All GETSI modules are designed and developed by teams of faculty and content experts and undergo rigorous review and classroom testing. GETSI is a collaborative project by UNAVCO (which runs NSF's Geodetic Facility), Indiana University, and Idaho State University. The Science Education Resource Center (SERC) provides assessment and evaluation expertise and webhosting.
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Friedli, Michael; Kirchgessner, Norbert; Grieder, Christoph; Liebisch, Frank; Mannale, Michael; Walter, Achim
2016-01-01
Plant growth is a good indicator of crop performance and can be measured by different methods and on different spatial and temporal scales. In this study, we measured the canopy height growth of maize (Zea mays), soybean (Glycine max) and wheat (Triticum aestivum) under field conditions by terrestrial laser scanning (TLS). We tested the hypotheses whether such measurements are capable to elucidate (1) differences in architecture that exist between genotypes; (2) genotypic differences between canopy height growth during the season and (3) short-term growth fluctuations (within 24 h), which could e.g. indicate responses to rapidly fluctuating environmental conditions. The canopies were scanned with a commercially available 3D laser scanner and canopy height growth over time was analyzed with a novel and simple approach using spherical targets with fixed positions during the whole season. This way, a high precision of the measurement was obtained allowing for comparison of canopy parameters (e.g. canopy height growth) at subsequent time points. Three filtering approaches for canopy height calculation from TLS were evaluated and the most suitable approach was used for the subsequent analyses. For wheat, high coefficients of determination (R(2)) of the linear regression between manually measured and TLS-derived canopy height were achieved. The temporal resolution that can be achieved with our approach depends on the scanned crop. For maize, a temporal resolution of several hours can be achieved, whereas soybean is ideally scanned only once per day, after leaves have reached their most horizontal orientation. Additionally, we could show for maize that plant architectural traits are potentially detectable with our method. The TLS approach presented here allows for measuring canopy height growth of different crops under field conditions with a high temporal resolution, depending on crop species. This method will enable advances in automated phenotyping for breeding and precision agriculture applications. In future studies, the TLS method can be readily applied to detect the effects of plant stresses such as drought, limited nutrient availability or compacted soil on different genotypes or on spatial variance in fields.
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Multi-Scale Voxel Segmentation for Terrestrial Lidar Data within Marshes
NASA Astrophysics Data System (ADS)
Nguyen, C. T.; Starek, M. J.; Tissot, P.; Gibeaut, J. C.
2016-12-01
The resilience of marshes to a rising sea is dependent on their elevation response. Terrestrial laser scanning (TLS) is a detailed topographic approach for accurate, dense surface measurement with high potential for monitoring of marsh surface elevation response. The dense point cloud provides a 3D representation of the surface, which includes both terrain and non-terrain objects. Extraction of topographic information requires filtering of the data into like-groups or classes, therefore, methods must be incorporated to identify structure in the data prior to creation of an end product. A voxel representation of three-dimensional space provides quantitative visualization and analysis for pattern recognition. The objectives of this study are threefold: 1) apply a multi-scale voxel approach to effectively extract geometric features from the TLS point cloud data, 2) investigate the utility of K-means and Self Organizing Map (SOM) clustering algorithms for segmentation, and 3) utilize a variety of validity indices to measure the quality of the result. TLS data were collected at a marsh site along the central Texas Gulf Coast using a Riegl VZ 400 TLS. The site consists of both exposed and vegetated surface regions. To characterize structure of the point cloud, octree segmentation is applied to create a tree data structure of voxels containing the points. The flexibility of voxels in size and point density makes this algorithm a promising candidate to locally extract statistical and geometric features of the terrain including surface normal and curvature. The characteristics of the voxel itself such as the volume and point density are also computed and assigned to each point as are laser pulse characteristics. The features extracted from the voxelization are then used as input for clustering of the points using the K-means and SOM clustering algorithms. Optimal number of clusters are then determined based on evaluation of cluster separability criterions. Results for different combinations of the feature space vector and differences between K-means and SOM clustering will be presented. The developed method provides a novel approach for compressing TLS scene complexity in marshes, such as for vegetation biomass studies or erosion monitoring.
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NASA Astrophysics Data System (ADS)
Bianchetti, Matteo; Agliardi, Federico; Villa, Alberto; Battista Crosta, Giovanni; Rivolta, Carlo
2015-04-01
Rockfall risk analysis require quantifying rockfall onset susceptibility and magnitude scenarios at source areas, and the expected rockfall trajectories and related dynamic quantities. Analysis efforts usually focus on the rockfall runout component, whereas rock mass characterization and block size distribution quantification, monitoring and analysis of unstable rock volumes are usually performed using simplified approaches, due to technological and site-specific issues. Nevertheless, proper quantification of rock slope stability and rockfall magnitude scenarios is key when dealing with high rock walls, where widespread rockfall sources and high variability of release mechanisms and block volumes can result in excessive modelling uncertainties and poorly constrained mitigation measures. We explored the potential of integrating field, remote sensing, structural analysis and stability modelling techniques to improve hazard assessment at the Gallivaggio sanctuary site, a XVI century heritage located along the State Road 36 in the Spluga Valley (Italian Central Alps). The site is impended by a subvertical cliff up to 600 m high, made of granitic orthogneiss of the Truzzo granitic complex (Tambo Nappe, upper Pennidic domain). The rock mass is cut by NNW and NW-trending slope-scale structural lineaments and by 5-6 fracture sets with variable spatial distribution, spacing and persistence, which bound blocks up to tens of cubic meters and control the 3D slope morphology. The area is characterised by widespread rock slope instability from rockfalls to massive failures. Although a 180 m long embankment was built to protect the site from rockfalls, concerns remain about potential large unstable rock volumes or flyrocks projected by the widely observed impact fragmentation of stiff rock blocks. Thus, the authority in charge started a series of periodical GB-InSAR monitoring surveys using LiSALabTM technology (12 surveys in 2011-2014), which outlined the occurrence of unstable spots spread over the cliff, with cm-scale cumulative displacements in the observation period. To support the interpretation and analysis of these data, we carried out multitemporal TLS surveys (5 sessions between September 2012 and October 2014) using a Riegl VZ-1000 long-range laser scanner. We performed rock mass structural analyses on dense TLS point clouds using two different approaches: 1) manual discontinuity orientation and intensity measurement from digital outcrops; 2) automatic feature extraction and intensity evaluation through the development of an original Matlab tool, suited for multi-scale applications and optimized for parallel computing. Results were validated using field discontinuity measurements and compared to evaluate advantages and limitations of different approaches, and allowed: 1) outlining the precise location, geometry and kinematics of unstable blocks and block clusters corresponding to radar moving spots; 2) performing stability analyses; 3) quantifying rockwall changes over the observation period. Our analysis provided a robust spatial characterization of rockfall sources, block size distribution and onset susceptibility as input for 3D runout modelling and quantitative risk analysis.
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Predicting X-ray diffuse scattering from translation–libration–screw structural ensembles
DOE Office of Scientific and Technical Information (OSTI.GOV)
Van Benschoten, Andrew H.; Afonine, Pavel V.; Terwilliger, Thomas C.
2015-07-28
A method of simulating X-ray diffuse scattering from multi-model PDB files is presented. Despite similar agreement with Bragg data, different translation–libration–screw refinement strategies produce unique diffuse intensity patterns. Identifying the intramolecular motions of proteins and nucleic acids is a major challenge in macromolecular X-ray crystallography. Because Bragg diffraction describes the average positional distribution of crystalline atoms with imperfect precision, the resulting electron density can be compatible with multiple models of motion. Diffuse X-ray scattering can reduce this degeneracy by reporting on correlated atomic displacements. Although recent technological advances are increasing the potential to accurately measure diffuse scattering, computational modeling andmore » validation tools are still needed to quantify the agreement between experimental data and different parameterizations of crystalline disorder. A new tool, phenix.diffuse, addresses this need by employing Guinier’s equation to calculate diffuse scattering from Protein Data Bank (PDB)-formatted structural ensembles. As an example case, phenix.diffuse is applied to translation–libration–screw (TLS) refinement, which models rigid-body displacement for segments of the macromolecule. To enable the calculation of diffuse scattering from TLS-refined structures, phenix.tls-as-xyz builds multi-model PDB files that sample the underlying T, L and S tensors. In the glycerophosphodiesterase GpdQ, alternative TLS-group partitioning and different motional correlations between groups yield markedly dissimilar diffuse scattering maps with distinct implications for molecular mechanism and allostery. These methods demonstrate how, in principle, X-ray diffuse scattering could extend macromolecular structural refinement, validation and analysis.« less
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NASA Astrophysics Data System (ADS)
Bitenc, M.; Kieffer, D. S.; Khoshelham, K.
2015-08-01
The precision of Terrestrial Laser Scanning (TLS) data depends mainly on the inherent random range error, which hinders extraction of small details from TLS measurements. New post processing algorithms have been developed that reduce or eliminate the noise and therefore enable modelling details at a smaller scale than one would traditionally expect. The aim of this research is to find the optimum denoising method such that the corrected TLS data provides a reliable estimation of small-scale rock joint roughness. Two wavelet-based denoising methods are considered, namely Discrete Wavelet Transform (DWT) and Stationary Wavelet Transform (SWT), in combination with different thresholding procedures. The question is, which technique provides a more accurate roughness estimates considering (i) wavelet transform (SWT or DWT), (ii) thresholding method (fixed-form or penalised low) and (iii) thresholding mode (soft or hard). The performance of denoising methods is tested by two analyses, namely method noise and method sensitivity to noise. The reference data are precise Advanced TOpometric Sensor (ATOS) measurements obtained on 20 × 30 cm rock joint sample, which are for the second analysis corrupted by different levels of noise. With such a controlled noise level experiments it is possible to evaluate the methods' performance for different amounts of noise, which might be present in TLS data. Qualitative visual checks of denoised surfaces and quantitative parameters such as grid height and roughness are considered in a comparative analysis of denoising methods. Results indicate that the preferred method for realistic roughness estimation is DWT with penalised low hard thresholding.
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NASA Astrophysics Data System (ADS)
Cooper, S. D.; Roy, D. P.; Sathyachandran, S. K.
2016-12-01
Quantifying the above ground biomass of grasslands is needed for a number of applications including monitoring grass productivity, wildlife habitat, carbon storage, and fuel bed characteristics. Destructive biomass measurements, although highly accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. A number of non-destructive techniques have been developed that relate vegetation structural properties to above ground biomass. Conventionally, the disc pasture meter is used for rapid grass biomass estimation and uses the settling height of a disk placed on the grass and allometry. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield highly precise three-dimensional (3D) structural measurements of vegetation quite rapidly. Recent advances in computing and data acquisition technologies have led to the successful application of TLS and SfM in woody biomass estimation, but application in grassland systems remains largely untested. The Canopy Biomass Lidar (CBL) is one such advance and is a highly portable and relatively inexpensive TLS unit allowing for rapid and widespread data collection. We investigated the efficacy of a CBL unit as well as SfM in allometric estimation of grassland biomass from volumetric measurements derived from these two technologies, both separately and through the merging of the two independently generated 3D point clouds. The results are compared to biomass estimation from a pasture disc meter. Best use practices for grassland applications of these technologies are also presented.
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De La Rosa, Vanessa Y; Asfaha, Jonathan; Fasullo, Michael; Loguinov, Alex; Li, Peng; Moore, Lee E; Rothman, Nathaniel; Nakamura, Jun; Swenberg, James A; Scelo, Ghislaine; Zhang, Luoping; Smith, Martyn T; Vulpe, Chris D
2017-11-01
Trichloroethylene (TCE), an industrial chemical and environmental contaminant, is a human carcinogen. Reactive metabolites are implicated in renal carcinogenesis associated with TCE exposure, yet the toxicity mechanisms of these metabolites and their contribution to cancer and other adverse effects remain unclear. We employed an integrated functional genomics approach that combined functional profiling studies in yeast and avian DT40 cell models to provide new insights into the specific mechanisms contributing to toxicity associated with TCE metabolites. Genome-wide profiling studies in yeast identified the error-prone translesion synthesis (TLS) pathway as an import mechanism in response to TCE metabolites. The role of TLS DNA repair was further confirmed by functional profiling in DT40 avian cell lines, but also revealed that TLS and homologous recombination DNA repair likely play competing roles in cellular susceptibility to TCE metabolites in higher eukaryotes. These DNA repair pathways are highly conserved between yeast, DT40, and humans. We propose that in humans, mutagenic TLS is favored over homologous recombination repair in response to TCE metabolites. The results of these studies contribute to the body of evidence supporting a mutagenic mode of action for TCE-induced renal carcinogenesis mediated by reactive metabolites in humans. Our approach illustrates the potential for high-throughput in vitro functional profiling in yeast to elucidate toxicity pathways (molecular initiating events, key events) and candidate susceptibility genes for focused study. © The Author 2017. Published by Oxford University Press on behalf of the Society of Toxicology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.
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NASA Astrophysics Data System (ADS)
Owers, Christopher J.; Rogers, Kerrylee; Woodroffe, Colin D.
2018-05-01
Above-ground biomass represents a small yet significant contributor to carbon storage in coastal wetlands. Despite this, above-ground biomass is often poorly quantified, particularly in areas where vegetation structure is complex. Traditional methods for providing accurate estimates involve harvesting vegetation to develop mangrove allometric equations and quantify saltmarsh biomass in quadrats. However broad scale application of these methods may not capture structural variability in vegetation resulting in a loss of detail and estimates with considerable uncertainty. Terrestrial laser scanning (TLS) collects high resolution three-dimensional point clouds capable of providing detailed structural morphology of vegetation. This study demonstrates that TLS is a suitable non-destructive method for estimating biomass of structurally complex coastal wetland vegetation. We compare volumetric models, 3-D surface reconstruction and rasterised volume, and point cloud elevation histogram modelling techniques to estimate biomass. Our results show that current volumetric modelling approaches for estimating TLS-derived biomass are comparable to traditional mangrove allometrics and saltmarsh harvesting. However, volumetric modelling approaches oversimplify vegetation structure by under-utilising the large amount of structural information provided by the point cloud. The point cloud elevation histogram model presented in this study, as an alternative to volumetric modelling, utilises all of the information within the point cloud, as opposed to sub-sampling based on specific criteria. This method is simple but highly effective for both mangrove (r2 = 0.95) and saltmarsh (r2 > 0.92) vegetation. Our results provide evidence that application of TLS in coastal wetlands is an effective non-destructive method to accurately quantify biomass for structurally complex vegetation.
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NASA Astrophysics Data System (ADS)
Moorthy, Inian
Spectroscopic observational data for vegetated environments, have been coupled with 3D physically-based radiative transfer models for retrievals of biochemical and biophysical indicators of vegetation health and condition. With the recent introduction of Terrestrial Laser Scanning (TLS) units, there now exists a means of rapidly measuring intricate structural details of vegetation canopies, which can also serve as input into 3D radiative transfer models. In this investigation, Intelligent Laser Ranging and Imaging System (ILRIS-3D) data was acquired of individual tree crowns in laboratory, and field-based experiments. The ILRIS-3D uses the Time-Of-Flight (TOF) principle to measure the distances of objects based on the time interval between laser pulse exitance and return, upon reflection from an object. At the laboratory-level, this exploratory study demonstrated and validated innovative approaches for retrieving crown-level estimates of Leaf Area Index (LAI) (r2 = 0.98, rmse = 0.26m2/m2), a critical biophysical parameter for vegetation monitoring and modeling. These methods were implemented and expanded in field experiments conducted in olive (Olea europaea L.) orchards in Cordoba, Spain, where ILRIS-3D observations for 24 structurally-variable trees were made. Robust methodologies were developed to characterize diagnostic architectural parameters, such as tree height (r2 = 0.97, rmse = 0.21m), crown width (r 2 = 0.98, rmse = 0.12m), crown height (r2 = 0.81, rmse = 0.11m), crown volume (r2 = 0.99, rmse = 2.6m3), and LAI (r2 = 0.76, rmse = 0.27m2/ m2). These parameters were subsequently used as direct inputs into the Forest LIGHT (FLIGHT) 3D ray tracing model for characterization of the spectral behavior of the olive crowns. Comparisons between FLIGHT-simulated spectra and measured data showed small differences in the visible (< 3%) and near infrared (< 10%) spectral ranges. These differences between model simulations and measurements were significantly correlated to TLS-derived tree crown complexity metrics. The specific implications of internal crown complexity on estimating leaf chlorophyll concentration, a pertinent physiological health indicator, is highlighted. This research demonstrates that TLS systems can potentially be the new observational tool and benchmark for precise characterization of vegetation architecture for synergy with 3D radiative transfer models for improved operational management of agricultural crops.
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Statistical evaluation of the influence of the uncertainty budget on B-spline curve approximation
NASA Astrophysics Data System (ADS)
Zhao, Xin; Alkhatib, Hamza; Kargoll, Boris; Neumann, Ingo
2017-12-01
In the field of engineering geodesy, terrestrial laser scanning (TLS) has become a popular method for detecting deformations. This paper analyzes the influence of the uncertainty budget on free-form curves modeled by B-splines. Usually, free-form estimation is based on scanning points assumed to have equal accuracies, which is not realistic. Previous findings demonstrate that the residuals still contain random and systematic uncertainties caused by instrumental, object-related and atmospheric influences. In order to guarantee the quality of derived estimates, it is essential to be aware of all uncertainties and their impact on the estimation. In this paper, a more detailed uncertainty budget is considered, in the context of the "Guide to the Expression of Uncertainty in Measurement" (GUM), which leads to a refined, heteroskedastic variance covariance matrix (VCM) of TLS measurements. Furthermore, the control points of B-spline curves approximating a measured bridge are estimated. Comparisons are made between the estimated B-spline curves using on the one hand a homoskedastic VCM and on the other hand the refined VCM. To assess the statistical significance of the differences displayed by the estimates for the two stochastic models, a nested model misspecification test and a non-nested model selection test are described and applied. The test decisions indicate that the homoskedastic VCM should be replaced by a heteroskedastic VCM in the direction of the suggested VCM. However, the tests also indicate that the considered VCM is still inadequate in light of the given data set and should therefore be improved.
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Dealing with systematic laser scanner errors due to misalignment at area-based deformation analyses
NASA Astrophysics Data System (ADS)
Holst, Christoph; Medić, Tomislav; Kuhlmann, Heiner
2018-04-01
The ability to acquire rapid, dense and high quality 3D data has made terrestrial laser scanners (TLS) a desirable instrument for tasks demanding a high geometrical accuracy, such as geodetic deformation analyses. However, TLS measurements are influenced by systematic errors due to internal misalignments of the instrument. The resulting errors in the point cloud might exceed the magnitude of random errors. Hence, it is important to assure that the deformation analysis is not biased by these influences. In this study, we propose and evaluate several strategies for reducing the effect of TLS misalignments on deformation analyses. The strategies are based on the bundled in-situ self-calibration and on the exploitation of two-face measurements. The strategies are verified analyzing the deformation of the Onsala Space Observatory's radio telescope's main reflector. It is demonstrated that either two-face measurements as well as the in-situ calibration of the laser scanner in a bundle adjustment improve the results of deformation analysis. The best solution is gained by a combination of both strategies.
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PrimPol prevents APOBEC/AID family mediated DNA mutagenesis
Pilzecker, Bas; Buoninfante, Olimpia Alessandra; Pritchard, Colin; Blomberg, Olga S.; Huijbers, Ivo J.; van den Berk, Paul C.M.; Jacobs, Heinz
2016-01-01
Abstract PrimPol is a DNA damage tolerant polymerase displaying both translesion synthesis (TLS) and (re)-priming properties. This led us to study the consequences of a PrimPol deficiency in tolerating mutagenic lesions induced by members of the APOBEC/AID family of cytosine deaminases. Interestingly, during somatic hypermutation, PrimPol counteracts the generation of C>G transversions on the leading strand. Independently, mutation analyses in human invasive breast cancer confirmed a pro-mutagenic activity of APOBEC3B and revealed a genome-wide anti-mutagenic activity of PRIMPOL as well as most Y-family TLS polymerases. PRIMPOL especially prevents APOBEC3B targeted cytosine mutations within TpC dinucleotides. As C transversions induced by APOBEC/AID family members depend on the formation of AP-sites, we propose that PrimPol reprimes preferentially downstream of AP-sites on the leading strand, to prohibit error-prone TLS and simultaneously stimulate error-free homology directed repair. These in vivo studies are the first demonstrating a critical anti-mutagenic activity of PrimPol in genome maintenance. PMID:26926109
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Using History and Philosophy of Science to Promote Students' Argumentation
NASA Astrophysics Data System (ADS)
Archila, Pablo Antonio
2015-11-01
This article describes the effect of a teaching-learning sequence (TLS) based on the discovery of oxygen in promoting students' argumentation. It examines the written and oral arguments produced by 63 high school students (24 females and 39 males, 16-17 years old) in France during a complete TLS supervised by the same teacher. The data used in this analysis was derived from students' written responses, audio and video recordings, and written field notes. The first goal of this investigation was to provide evidence that an approach combining history and philosophy of science and argumentation could increase students' awareness of the relevance of experimentation and communication to scientific progress. The second goal was to assess the effectiveness of the TLS to engage students in argumentative classroom interactions (such as debates) relating to the discovery of oxygen at the end of the 18th century. The findings show that this historical case can be useful for promoting students' argumentation and is also appropriate for high school students. Future research should include students of other ages, other historical episodes and experiences in other parts of the world.
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Miller, William M; Miller, William C; Barrington, Clare; Weir, Sharon S; Chen, Sanny Y; Emch, Michael E; Pettifor, Audrey E; Paz-Bailey, Gabriela
2017-12-01
This study aims to describe the transgender women and men who have sex with men (MSM) missed through venue-based sampling and illustrate how data on venues can be used to prioritize service delivery. Respondent-driven sampling (RDS) and time-location sampling (TLS) were used concurrently in 2010 for behavioral surveillance among MSM and transgender women in Guatemala City. RDS recruits who did not frequent venues (n = 106) were compared to TLS recruits (n = 609). TLS participants recruited at different types of venues were compared. RDS recruits who did not frequent venues were less educated, less likely to identify as gay, more likely to have concurrent partners and female sexual partners. Participants recruited at NGOs, saunas, hotels, streets and parks had more partners, were more likely to receive money for sex or have concurrent partners. Prevention programs for MSM and transgender women should characterize social venues and people that frequent them and improve service coverage through venues and social networks.
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NASA Astrophysics Data System (ADS)
Fabbri, Stefano; Giambastiani, Beatrice M. S.; Sistilli, Flavia; Scarelli, Frederico; Gabbianelli, Giovanni
2017-10-01
Along the North Adriatic Sea coast (Italy), vulnerability to climate change is further aggravated by anthropogenic influences, such as strong subsidence rate due to deep groundwater and gas abstraction, tourism and industry impacts. In this context, conservation and restoration of coastal sand dunes become extremely important especially because of their importance in terms of 'natural' coastal defense. This paper proposes an innovative geomorphological approach based on Terrestrial Laser Scanning - TLS, which allows us to measure and monitor morphometric dune evolution with high precision and details. Several TLS surveys were performed along the Ravenna coast (Adriatic Sea, Italy) and the resulting Digital Elevation Models (DEMs) were analyzed in order to classify the foredune ridges in three geomorphological sub-zones. The topographic, areal and volumetric variations over time of geomorphological units were calculated by GIS tools in order to identify seasonal trends or particular pattern. Meteo-marine climate conditions were also analyzed and Principal Component Analysis (PCA) was performed to correlate changes in morphology with meteo-marine forcing factors, highlighting the ones that most influence dune evolution and dynamics.
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NASA Astrophysics Data System (ADS)
Garcia Fernandez, J.; Tammi, K.; Joutsiniemi, A.
2017-02-01
Recent advances in Terrestrial Laser Scanner (TLS), in terms of cost and flexibility, have consolidated this technology as an essential tool for the documentation and digitalization of Cultural Heritage. However, once the TLS data is used, it basically remains stored and left to waste.How can highly accurate and dense point clouds (of the built heritage) be processed for its reuse, especially to engage a broader audience? This paper aims to answer this question by a channel that minimizes the need for expert knowledge, while enhancing the interactivity with the as-built digital data: Virtual Heritage Dissemination through the production of VR content. Driven by the ProDigiOUs project's guidelines on data dissemination (EU funded), this paper advances in a production path to transform the point cloud into virtual stereoscopic spherical images, taking into account the different visual features that produce depth perception, and especially those prompting visual fatigue while experiencing the VR content. Finally, we present the results of the Hiedanranta's scans transformed into stereoscopic spherical animations.
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Low-temperature internal friction in quenched amorphous selenium films
NASA Astrophysics Data System (ADS)
Metcalf, Thomas; Liu, Xiao; Abernathy, Matthew; Stephens, Richard
Using ultra-high-quality-factor silicon mechanical resonators, we have measured the internal friction and shear modulus of amorphous selenium (a-Se) films at liquid helium temperatures. The glass transition temperature of selenium lies at a conveniently accessible 40 -50° C, facilitating a series of in- and ex-situ annealing and quench cycles. The a-Se films exhibit the low-temperature internal friction plateau (10-4 <=Q-1 <=10-3) found in almost all amorphous solids, which is a result of (and direct measure of) a broad distribution of two-level tunneling systems (TLS), whose origin is still unknown. We find a clear correlation between the post-anneal quench rate and the value of this plateau. The implications of these observations for understanding the microscopic origin of TLS will be discussed. Principally, the observed changes in the internal friction plateau could show the way in which the density of TLS could be manipulated or suppressed in other amorphous systems. Work supported by the Office of Naval Research and the University of Pennsylvania Materials Research Science and Engineering Center.
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Point-based and model-based geolocation analysis of airborne laser scanning data
NASA Astrophysics Data System (ADS)
Sefercik, Umut Gunes; Buyuksalih, Gurcan; Jacobsen, Karsten; Alkan, Mehmet
2017-01-01
Airborne laser scanning (ALS) is one of the most effective remote sensing technologies providing precise three-dimensional (3-D) dense point clouds. A large-size ALS digital surface model (DSM) covering the whole Istanbul province was analyzed by point-based and model-based comprehensive statistical approaches. Point-based analysis was performed using checkpoints on flat areas. Model-based approaches were implemented in two steps as strip to strip comparing overlapping ALS DSMs individually in three subareas and comparing the merged ALS DSMs with terrestrial laser scanning (TLS) DSMs in four other subareas. In the model-based approach, the standard deviation of height and normalized median absolute deviation were used as the accuracy indicators combined with the dependency of terrain inclination. The results demonstrate that terrain roughness has a strong impact on the vertical accuracy of ALS DSMs. From the relative horizontal shifts determined and partially improved by merging the overlapping strips and comparison of the ALS, and the TLS, data were found not to be negligible. The analysis of ALS DSM in relation to TLS DSM allowed us to determine the characteristics of the DSM in detail.
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Bypass of a psoralen DNA interstrand cross-link by DNA polymerases beta, iota, and kappa in vitro
Smith, Leigh A.; Makarova, Alena V.; Samson, Laura; Thiesen, Katherine E.; Dhar, Alok; Bessho, Tadayoshi
2012-01-01
Repair of DNA inter-strand cross-links in mammalian cells involves several biochemically distinctive processes, including the release of one of the cross-linked strands and translesion DNA synthesis (TLS). In this report, we investigated in vitro TLS activity of psoralen DNA inter-strand cross-link by three DNA repair polymerases, DNA polymerase beta, kappa and iota. DNA polymerase beta is capable of bypassing a psoralen cross-link with a low efficiency. Cell extracts prepared from DNA polymerase beta knockout mouse embryonic fibroblast showed a reduced bypass activity of the psoralen cross-link and purified DNA polymerase beta restored the bypass activity. In addition, DNA polymerase iota mis-incorporated thymine across the psoralen cross-link and DNA polymerase kappa extended these mis-paired primer ends, suggesting that DNA polymerase iota may serve as an inserter and DNA polymerase kappa may play a role as an extender in the repair of psoralen DNA inter-strand cross-links. The results demonstrated here indicate that multiple DNA polymerases could participate in TLS steps in mammalian DNA inter-strand cross-link repair. PMID:23106263
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Damage Detection for Historical Architectures Based on Tls Intensity Data
NASA Astrophysics Data System (ADS)
Li, Q.; Cheng, X.
2018-04-01
TLS (Terrestrial Laser Scanner) has long been preferred in the cultural heritage field for 3D documentation of historical sites thanks to its ability to acquire the geometric information without any physical contact. Besides the geometric information, most TLS systems also record the intensity information, which is considered as an important measurement of the spectral property of the scanned surface. Recent studies have shown the potential of using intensity for damage detection. However, the original intensity is affected by scanning geometry such as range and incidence angle and other factors, thus making the results less accurate. Therefore, in this paper, we present a method to detect certain damage areas using the corrected intensity data. Firstly, two data-driven models have been developed to correct the range and incidence angle effect. Then the corrected intensity is used to generate 2D intensity images for classification. After the damage areas being detected, they are re-projected to the 3D point cloud for better visual representation and further investigation. The experiment results indicate the feasibility and validity of the corrected intensity for damage detection.
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An efficient temporal logic for robotic task planning
NASA Technical Reports Server (NTRS)
Becker, Jeffrey M.
1989-01-01
Computations required for temporal reasoning can be prohibitively expensive if fully general representations are used. Overly simple representations, such as totally ordered sequence of time points, are inadequate for use in a nonlinear task planning system. A middle ground is identified which is general enough to support a capable nonlinear task planner, but specialized enough that the system can support online task planning in real time. A Temporal Logic System (TLS) was developed during the Intelligent Task Automation (ITA) project to support robotic task planning. TLS is also used within the ITA system to support plan execution, monitoring, and exception handling.
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NASA Technical Reports Server (NTRS)
Stern, J. C.; McAdam, A. C.; Archer, P. D., Jr.; Bower, H.; Buch, A.; Eigenbrode, J.; Freissinet, C.; Franz, H. B.; Glavin, D.; Jones, J. H.;
2013-01-01
The Sample Analysis at Mars (SAM) Instrument Suite on the Mars Science Laboratory (MSL) Rover Curiosity made its first solid sample evolved gas analysis of unconsolidated material at aeolian bedform Rocknest in Gale Crater. The magnitude of O2 evolved in each run as well as the chlorinated hydrocarbons detected by SAM gas chromatograph/ mass spectrometer (GCMS) [1] suggest a chlorinated oxidant such as perchlorate in Rocknest materials [2]. Perchlorate induced combustion of organics present in the sample would contribute to the CO2 volatile inventory, possibly overlapping with CO2 from inorganic sources. The resulting carbon and oxygen isotopic composition of CO2 sent to the Tunable Laser Spectrometer (TLS) for analysis would represent mixed sources. This work was undertaken to better understand a) how well the carbon isotopic composition ( 13C) of CO2 from partially combusted products represents their source and b) how the 13C of combusted products can be deconvolved from other carbon sources such as thermal decomposition of carbonate.
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Garaud, Soizic; de Wind, Alexandre; Van den Eynden, Gert; Boisson, Anais; Gu-Trantien, Chunyan; Naveaux, Céline; Lodewyckx, Jean-Nicolas; Duvillier, Hugues; Craciun, Ligia; Veys, Isabelle; Larsimont, Denis; Piccart-Gebhart, Martine; Stagg, John; Sotiriou, Christos
2017-01-01
ABSTRACT The clinical relevance of tumor-infiltrating lymphocytes (TIL) in breast cancer (BC) has been clearly established by their demonstrated correlation with long-term positive outcomes. Nevertheless, the relationship between protective immunity, observed in some patients, and critical features of the infiltrate remains unresolved. This study examined TIL density, composition and organization together with PD-1 and PD-L1 expression in freshly collected and paraffin-embedded tissues from 125 patients with invasive primary BC. Tumor and normal breast tissues were analyzed using both flow cytometry and immunohistochemistry. TIL density distribution is a continuum with 25% of tumors identified as TIL-negative at a TIL density equivalent to normal breast tissues. TIL-positive tumors (75%) were equally divided into TIL-intermediate and TIL-high. Tumors had higher mean frequencies of CD4+ T cells and CD19+ B cells and a lower mean frequency of CD8+ T cells compare with normal tissues, increasing the CD4+/CD8+ T-cell ratio. Tertiary lymphoid structures (TLS), principally located in the peri-tumoral stroma, were detected in 60% of tumors and correlated with higher TIL infiltration. PD-1 and PD-L1 expression were also associated with higher TIL densities and TLS. TIL density, TLS and PD-L1 expression were correlated with more aggressive tumor characteristics, including higher proliferation and hormone receptor negativity. Our findings reveal an important relationship between PD-1/PD-L1 expression, increased CD4+ T and B-cell infiltration, TIL density and TLS, suggesting that evaluating not only the extent but also the nature and location of the immune infiltrate should be considered when evaluating antitumor immunity and the potential for benefit from immunotherapies. PMID:28197375
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NASA Astrophysics Data System (ADS)
How, P.; James, M. R.; Wynn, P.
2014-12-01
Glacier movement is attributed to a sensitive configuration of driving forces. Here, we present an approach designed to evaluate the drivers of movement at Sólheimajökull, an outlet glacier from the Myrdalsjökull ice cap, Iceland, through combining terrestrial time-lapse photography and laser scanning (TLS). A time-lapse camera (a dSLR with intervalometer and solar-recharged battery power supply) collected hourly data over the summer of 2013. The data are subject to all the difficulties that are usually present in long time-lapse sequences, such as highly variable illumination and visibility conditions, evolving surfaces, and camera instabilities. Feature-tracking software [1] was used to: 1) track regions of static topography (e.g. the skyline) from which camera alignment could be continuously updated throughout the sequence; and 2) track glacial surface features for velocity estimation. Absolute georeferencing of the image sequence was carried out by registering the camera to a TLS survey acquired at the beginning of the monitoring period. A second TLS survey (July 2013) provided an additional 3D surface. By assuming glacial features moved in approximately planimetrically straight lines between the two survey dates, combining the two TLS surfaces with the monoscopic feature tracking allows 3D feature tracks to be derived. Such tracks will enable contributions from different drivers (e.g. surface melting) to be extracted, even in imagery that is acquired not perpendicular to glacier motion. At Sólheimajökull, our aim is to elucidate any volcanic contribution to the observed movement.[1] http://www.lancaster.ac.uk/staff/jamesm/software/pointcatcher.htm
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Liu, Shuai; Lu, Taixiang; Zhao, Chong; Shen, Jingxian; Tian, Yunming; Guan, Ying; Zeng, Lei; Xiao, Weiwei; Huang, Shaomin; Han, Fei
2014-09-01
Temporal lobe injury (TLI) is a debilitating complication after radiotherapy for nasopharyngeal carcinoma (NPC), especially in patients who suffer treatment relapses and receive re-irradiation. We explored the clinical characteristics and prognostic factors of TLI in locally recurrent NPC (rNPC) patients after re-irradiation using intensity modulated radiotherapy (IMRT). A total of 454 temporal lobes (TLs) from 227 locally rNPC patients were reviewed. The clinical characteristics of TLI were analyzed. In the two radiotherapy courses, the equivalent dose in 2 Gy per fraction (EQD2) for the TLs was recalculated to facilitate comparison of the individual data. The median follow-up time was 31 (range, 3-127) months. After re-irradiation using IMRT, 31.3 % (71/227) of patients developed TLI. The median latency of TLI was 15 (range, 4-100) months. Univariate and multivariate analysis showed that the interval time (IT) between the two courses of radiotherapy and the summation of the maximum doses of the two radiotherapy courses (EQD2 - ∑max) were independent factors influencing TLI. The 5-year incidence of TLI for an IT ≤26 or >26 months was 35.9 and 53.7 % respectively (p = 0.024). The median maximum doses delivered to the injured TLs were significantly higher than was the case for the uninjured TLs after two courses of radiotherapy (135.3 and 129.8 Gy, respectively: p < 0.001). The incidence of TLI with an EQD2 - ∑max < 125 Gy was <5 %, and with an EQD2 - ∑max <145 Gy it was <50 %. A treatment mode limiting EQD2 - ∑max <125 Gy with a >2-year interval was found to be relatively safe.
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Impact of cyclostationarity on fan broadband noise prediction
NASA Astrophysics Data System (ADS)
Wohlbrandt, A.; Kissner, C.; Guérin, S.
2018-04-01
One of the dominant noise sources of modern Ultra High Bypass Ratio (UHBR) engines is the interaction of the rotor wakes with the leading edges of the stator vanes in the fan stage. While the tonal components of this noise generation mechanism are fairly well understood by now, the broadband components are not. This calls to further the understanding of the broadband noise generation in the fan stage. This article introduces a new extension to the Random Particle Mesh (RPM) method, which accommodates in-depth studies of the impact of cyclostationary wake characteristics on the broadband noise in the fan stage. The RPM method is used to synthesize a turbulence field in the stator domain using a URANS simulation characterized by time-periodic turbulence and mean flow. The rotor-stator interaction noise is predicted by a two-dimensional CAA computation of the stator cascade. The impact of cyclostationarity is decomposed into various effects, which are separately investigated. This leads to the finding that the periodic turbulent kinetic energy (TKE) and periodic flow have only a negligible effect on the radiated sound power. The impact of the periodic integral length scale (TLS) is, however, substantial. The limits of a stationary representation of the TLS are demonstrated making this new extension to the RPM method indispensable when background and wake TKE are of comparable level. Good agreement of the predictions with measurements obtained from the 2015 AIAA Fan Broadband Noise Prediction Workshop are also shown.
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Scalar and vector Keldysh models in the time domain
NASA Astrophysics Data System (ADS)
Kiselev, M. N.; Kikoin, K. A.
2009-04-01
The exactly solvable Keldysh model of disordered electron system in a random scattering field with extremely long correlation length is converted to the time-dependent model with extremely long relaxation. The dynamical problem is solved for the ensemble of two-level systems (TLS) with fluctuating well depths having the discrete Z 2 symmetry. It is shown also that the symmetric TLS with fluctuating barrier transparency may be described in terms of the vector Keldysh model with dime-dependent random planar rotations in xy plane having continuous SO(2) symmetry. Application of this model to description of dynamic fluctuations in quantum dots and optical lattices is discussed.
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Srivastava, Amit Kumar; Han, Chunhua; Zhao, Ran; Cui, Tiantian; Dai, Yuntao; Mao, Charlene; Zhao, Weiqiang; Zhang, Xiaoli; Yu, Jianhua; Wang, Qi-En
2015-04-07
Cancer stem cells (CSCs) with enhanced tumorigenicity and chemoresistance are believed to be responsible for treatment failure and tumor relapse in ovarian cancer patients. However, it is still unclear how CSCs survive DNA-damaging agent treatment. Here, we report an elevated expression of DNA polymerase η (Pol η) in ovarian CSCs isolated from both ovarian cancer cell lines and primary tumors, indicating that CSCs may have intrinsically enhanced translesion DNA synthesis (TLS). Down-regulation of Pol η blocked cisplatin-induced CSC enrichment both in vitro and in vivo through the enhancement of cisplatin-induced apoptosis in CSCs, indicating that Pol η-mediated TLS contributes to the survival of CSCs upon cisplatin treatment. Furthermore, our data demonstrated a depletion of miR-93 in ovarian CSCs. Enforced expression of miR-93 in ovarian CSCs reduced Pol η expression and increased their sensitivity to cisplatin. Taken together, our data suggest that ovarian CSCs have intrinsically enhanced Pol η-mediated TLS, allowing CSCs to survive cisplatin treatment, leading to tumor relapse. Targeting Pol η, probably through enhancement of miR-93 expression, might be exploited as a strategy to increase the efficacy of cisplatin treatment.
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Absorption spectrum of a two-level system subjected to a periodic pulse sequence
DOE Office of Scientific and Technical Information (OSTI.GOV)
Fotso, H. F.; Dobrovitski, V. V.
We investigate how the quantum control of a two-level system (TLS) coupled to photons can modify and tune the TLS’s photon absorption spectrum. Tuning and controlling the emission and the absorption is of much interest e.g. for the development of efficient interfaces between stationary and flying qubits in modern architectures for quantum computation and quantum communication. We consider the periodic pulse control, where the TLS is subjected to a periodic sequence of the near-resonant Rabi driving pulses, each pulse implementing a 180° rotation. For small inter-pulse delays, the absorption spectrum features a pronounced peak of stimulated emission at the pulsemore » frequency, as well as equidistant satellite peaks with smaller spectral weights. As long as the detuning between the carrier frequency of the driving and the TLS transition frequency remains moderate, this spectral shape shows little change. Therefore, the quantum control allows shifting the absorption peak to a desired position, and locks the absorption peak to the carrier frequency of the driving pulses. Detailed description of the spectrum, and its evolution as a function time, the inter-pulse spacing and the detuning, is presented.« less
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Control Measurements of Crane Rails Performed by Terrestrial Laser Scanning
Kregar, Klemen; Možina, Jan; Ambrožič, Tomaž; Kogoj, Dušan; Marjetič, Aleš; Štebe, Gašper; Savšek, Simona
2017-01-01
This article presents a method for measuring the geometry of crane rails with terrestrial laser scanning (TLS). Two sets of crane rails were divided into segments, their planes were adjusted, and the characteristic rail lines were defined. We used their profiles to define the positional and altitude deviations of the rails, the span and height difference between the two rails, and we also verified that they complied with the Eurocode 3 standard. We tested the method on crane rails at the hydroelectric power plant in Krško and the thermal power plant in Brestanica. We used two scanning techniques: “pure” TLS (Riegel VZ-400) and “hybrid” TLS (Leica MS50) scanning. This article’s original contribution lies in the detailed presentation of the computations used to define the characteristic lines of the rails without using the numeric procedures from existing software packages. We also analysed the influence of segment length and point density on the rail geometry results, and compared the two laser scanning techniques. We also compared the results obtained by terrestrial laser scanning with the results obtained from the classic polar method, which served as a reference point for its precision. PMID:28726755
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Surveying and monitoring for vulnerability assessment of an ancient building.
Fregonese, Luigi; Barbieri, Gaia; Biolzi, Luigi; Bocciarelli, Massimiliano; Frigeri, Aronne; Taffurelli, Laura
2013-07-31
This paper examines how surveying and monitoring improve our knowledge about ancient buildings, allow the interpretation of their structural response and help in the search for the best solutions for their conservation. The case study of Palazzo del Capitano in Mantua (Italy) is analyzed. In particular, the attention is focused on the use of a Terrestrial Laser Scanner (TLS) for surveying and monitoring too, considering that the building structural control has been performed in combination with other traditional topographic techniques such as geometric leveling and topographic networks for 3D control based on measurements through total stations. The study of TLS monitoring has been tested only in the last decade and it is an innovative method for the detection of displacements of particular surfaces. Till now the research has focused only on the use of TLS monitoring to control large structures and in particular landscape situations; thus its use for a civil construction and historical buildings is a new field of investigation. Despite the fact technological development and new methodologies seem offer new future potential for the analysis of ancient buildings, currently there are still important limits for the application of the investigated surveying and monitoring techniques.
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Absorption spectrum of a two-level system subjected to a periodic pulse sequence
Fotso, H. F.; Dobrovitski, V. V.
2017-06-01
We investigate how the quantum control of a two-level system (TLS) coupled to photons can modify and tune the TLS’s photon absorption spectrum. Tuning and controlling the emission and the absorption is of much interest e.g. for the development of efficient interfaces between stationary and flying qubits in modern architectures for quantum computation and quantum communication. We consider the periodic pulse control, where the TLS is subjected to a periodic sequence of the near-resonant Rabi driving pulses, each pulse implementing a 180° rotation. For small inter-pulse delays, the absorption spectrum features a pronounced peak of stimulated emission at the pulsemore » frequency, as well as equidistant satellite peaks with smaller spectral weights. As long as the detuning between the carrier frequency of the driving and the TLS transition frequency remains moderate, this spectral shape shows little change. Therefore, the quantum control allows shifting the absorption peak to a desired position, and locks the absorption peak to the carrier frequency of the driving pulses. Detailed description of the spectrum, and its evolution as a function time, the inter-pulse spacing and the detuning, is presented.« less
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NASA Astrophysics Data System (ADS)
Ranjan, R.; Menon, S.
2018-04-01
The two-level simulation (TLS) method evolves both the large-and the small-scale fields in a two-scale approach and has shown good predictive capabilities in both isotropic and wall-bounded high Reynolds number (Re) turbulent flows in the past. Sensitivity and ability of this modelling approach to predict fundamental features (such as backscatter, counter-gradient turbulent transport, small-scale vorticity, etc.) seen in high Re turbulent flows is assessed here by using two direct numerical simulation (DNS) datasets corresponding to a forced isotropic turbulence at Taylor's microscale-based Reynolds number Reλ ≈ 433 and a fully developed turbulent flow in a periodic channel at friction Reynolds number Reτ ≈ 1000. It is shown that TLS captures the dynamics of local co-/counter-gradient transport and backscatter at the requisite scales of interest. These observations are further confirmed through a posteriori investigation of the flow in a periodic channel at Reτ = 2000. The results reveal that the TLS method can capture both the large- and the small-scale flow physics in a consistent manner, and at a reduced overall cost when compared to the estimated DNS or wall-resolved LES cost.
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NASA Astrophysics Data System (ADS)
Camp, H. A.; Moyer, Steven; Moore, Richard K.
2010-04-01
The Night Vision and Electronic Sensors Directorate's current time-limited search (TLS) model, which makes use of the targeting task performance (TTP) metric to describe image quality, does not explicitly account for the effects of visual clutter on observer performance. The TLS model is currently based on empirical fits to describe human performance for a time of day, spectrum and environment. Incorporating a clutter metric into the TLS model may reduce the number of these empirical fits needed. The masked target transform volume (MTTV) clutter metric has been previously presented and compared to other clutter metrics. Using real infrared imagery of rural images with varying levels of clutter, NVESD is currently evaluating the appropriateness of the MTTV metric. NVESD had twenty subject matter experts (SME) rank the amount of clutter in each scene in a series of pair-wise comparisons. MTTV metric values were calculated and then compared to the SME observers rankings. The MTTV metric ranked the clutter in a similar manner to the SME evaluation, suggesting that the MTTV metric may emulate SME response. This paper is a first step in quantifying clutter and measuring the agreement to subjective human evaluation.
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Bhattarai, Bishnu P.; Gentle, Jake P.; Hill, Porter
Abstract—Overhead transmission lines (TLs) are conventionally given seasonal ratings based on conservative environmental assumptions. Such an approach often results in underutilization of the line ampacity as the worst conditions prevail only for a short period over a year/season. We presents dynamic line rating (DLR) as an enabling smart grid technology that adaptively computes ratings of TLs based on local weather conditions to utilize additional headroom of existing lines. In particular, general line ampacity state solver utilizes measured weather data for computing the real-time thermal rating of the TLs. The performance of the presented method is demonstrated from a field studymore » of DLR technology implementation on four TL segments at AltaLink, Canada. The performance is evaluated and quantified by comparing the existing static and proposed dynamic line ratings, and the potential benefits of DLR for enhanced transmission assets utilization. For the given line segments, the proposed DLR results in real-time ratings above the seasonal static ratings for most of the time; up to 95.1% of the time, with a mean increase of 72% over static rating.« less
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NASA Astrophysics Data System (ADS)
Jones, Laura K.; Kyle, Philip R.; Oppenheimer, Clive; Frechette, Jedediah D.; Okal, Marianne H.
2015-03-01
A Terrestrial Laser Scanning (TLS) instrument was used to image the topography of the Main Crater at Erebus volcano each December in 2008, 2009, and 2010. Our high-spatial resolution TLS scans provide unique insights into annual and decadal scale geomorphic evolution of the summit area when integrated with comparable data collected by an airborne instrument in 2001. We observe both a pattern of subsidence within the Inner Crater of the volcano and an ~ 3 m per-year drop in the lava lake level over the same time period that are suggestive of decreasing overpressure in an underlying magma reservoir. We also scanned the active phonolite lava lake hosted within the Inner Crater, and recorded rapid cyclic fluctuations in the level of the lake. These were sporadically interrupted by minor explosions by bursting gas bubbles at the lake surface. The TLS data permit calculation of lake level rise and fall speeds and associated rates of volumetric change within the lake. These new observations, when considered with prior determinations of rates of lake surface motion and gas output, are indicative of unsteady magma flow in the conduit and its associated variability in gas volume fraction.
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Ecosystem structure and function in the SPRUCE chambers at fine resolution
NASA Astrophysics Data System (ADS)
Glenn, N. F.; Graham, J.; Spaete, L.; Hanson, P. J.
2017-12-01
The Spruce and Peatland Responses Under Climatic and Environmental change (SPRUCE; operated by DOE's Oak Ridge National Laboratory) aims to assess biological and ecological responses in a peat bog to a range of increased temperatures and the presence of elevated atmospheric CO2 concentrations. We are using terrestrial laser scanning (TLS) to monitor vegetation productivity and hummock-hollow structure at cm-scale in the SPRUCE plots to complement in-situ measurements of gross and net primary production. The hummock-hollow peatland microtopography is associated with fluctuating water levels and sphagnum mosses, and ultimately controls C and methane cycling. We estimate tree growth by calculating increases in tree height and canopy voxel volume between years with the TLS data. Microtopography is also characterized over time with TLS but by using gridded cells to classify regions into hummocks or hollows. Spectroscopy to quantify water content in the sphagnum is used to further classify these microtopographic regions. As multiple years of data collection occur, we will couple our fine-scale remote sensing measurements with in-situ measurements of CO2 and CH4 flux measures to capture species-specific productivity responses to warming and increased CO2.
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Surveying and Monitoring for Vulnerability Assessment of an Ancient Building
Fregonese, Luigi; Barbieri, Gaia; Biolzi, Luigi; Bocciarelli, Massimiliano; Frigeri, Aronne; Taffurelli, Laura
2013-01-01
This paper examines how surveying and monitoring improve our knowledge about ancient buildings, allow the interpretation of their structural response and help in the search for the best solutions for their conservation. The case study of Palazzo del Capitano in Mantua (Italy) is analyzed. In particular, the attention is focused on the use of a Terrestrial Laser Scanner (TLS) for surveying and monitoring too, considering that the building structural control has been performed in combination with other traditional topographic techniques such as geometric leveling and topographic networks for 3D control based on measurements through total stations. The study of TLS monitoring has been tested only in the last decade and it is an innovative method for the detection of displacements of particular surfaces. Till now the research has focused only on the use of TLS monitoring to control large structures and in particular landscape situations; thus its use for a civil construction and historical buildings is a new field of investigation. Despite the fact technological development and new methodologies seem offer new future potential for the analysis of ancient buildings, currently there are still important limits for the application of the investigated surveying and monitoring techniques. PMID:23912425
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Brute Force Matching Between Camera Shots and Synthetic Images from Point Clouds
NASA Astrophysics Data System (ADS)
Boerner, R.; Kröhnert, M.
2016-06-01
3D point clouds, acquired by state-of-the-art terrestrial laser scanning techniques (TLS), provide spatial information about accuracies up to several millimetres. Unfortunately, common TLS data has no spectral information about the covered scene. However, the matching of TLS data with images is important for monoplotting purposes and point cloud colouration. Well-established methods solve this issue by matching of close range images and point cloud data by fitting optical camera systems on top of laser scanners or rather using ground control points. The approach addressed in this paper aims for the matching of 2D image and 3D point cloud data from a freely moving camera within an environment covered by a large 3D point cloud, e.g. a 3D city model. The key advantage of the free movement affects augmented reality applications or real time measurements. Therefore, a so-called real image, captured by a smartphone camera, has to be matched with a so-called synthetic image which consists of reverse projected 3D point cloud data to a synthetic projection centre whose exterior orientation parameters match the parameters of the image, assuming an ideal distortion free camera.
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Solinas, Cinzia; Garaud, Soizic; De Silva, Pushpamali; Boisson, Anaïs; Van den Eynden, Gert; de Wind, Alexandre; Risso, Paolo; Rodrigues Vitória, Joel; Richard, François; Migliori, Edoardo; Noël, Grégory; Duvillier, Hugues; Craciun, Ligia; Veys, Isabelle; Awada, Ahmad; Detours, Vincent; Larsimont, Denis; Piccart-Gebhart, Martine; Willard-Gallo, Karen
2017-01-01
There is an exponentially growing interest in targeting immune checkpoint molecules in breast cancer (BC), particularly in the triple-negative subtype where unmet treatment needs remain. This study was designed to analyze the expression, localization, and prognostic role of PD-1, PD-L1, PD-L2, CTLA-4, LAG3, and TIM3 in primary BC. Gene expression analysis using the METABRIC microarray dataset found that all six immune checkpoint molecules are highly expressed in basal-like and HER2-enriched compared to the other BC molecular subtypes. Flow cytometric analysis of fresh tissue homogenates from untreated primary tumors show that PD-1 is principally expressed on CD4+ or CD8+ T cells and CTLA-4 is expressed on CD4+ T cells. The global proportion of PD-L1+, PD-L2+, LAG3+, and TIM3+ tumor-infiltrating lymphocytes (TIL) was low and detectable in only a small number of tumors. Immunohistochemically staining fixed tissues from the same tumors was employed to score TIL and tertiary lymphoid structures (TLS). PD-L1+, PD-L2+, LAG3+, and TIM3+ cells were detected in some TLS in a pattern that resembles secondary lymphoid organs. This observation suggests that TLS are important sites of immune activation and regulation, particularly in tumors with extensive baseline immune infiltration. Significantly improved overall survival was correlated with PD-1 expression in the HER2-enriched and PD-L1 or CTLA-4 expression in basal-like BC. PD-1 and CTLA-4 proteins were most frequently detected on TIL, which supports the correlations observed between their gene expression and improved long-term outcome in basal-like and HER2-enriched BC. PD-L1 expression by tumor or immune cells is uncommon in BC. Overall, the data presented here distinguish PD-1 as a marker of T cell activity in both the T and B cell areas of BC associated TLS. We found that immune checkpoint molecule expression parallels the extent of TIL and TLS, although there is a noteworthy amount of heterogeneity between tumors even within the same molecular subtype. These data indicate that assessing the levels of immune checkpoint molecule expression in an individual patient has important implications for the success of therapeutically targeting them in BC. PMID:29163490
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NASA Astrophysics Data System (ADS)
Wedmore, L. N. J.; Gregory, L. C.; McCaffrey, K. J. W.; Wilkinson, M.; Walters, R. J.
2017-12-01
Coseismic fault slip in the shallow crust is poorly constrained by many of the conventional tools used to record deformation during earthquakes. GNSS stations are often distributed too far from faults and radar images tend to decorrelate across earthquake surface ruptures. As a result, our understanding of near-field fault slip, shallow slip deficits, and off-fault deformation is limited. We present evidence from the 2016 central Italy earthquake sequence, during which we captured shallow coseismic and post-seismic slip using a combination of terrestrial laser scanning (TLS), structure-from-motion (SfM), and near-field low-cost GNSS recording at 1Hz. Three Mw>6 earthquakes on the 24th August, 26th and 30th October all involved slip on the Mt Vettore-Mt Bove fault system. We collected TLS and SfM point clouds across three separate segments of this system. Each segment experienced a different record of slip during the earthquake sequence; all three ruptured in the largest event (Mw 6.6. on October 30th) but two segments also ruptured during either the 24th August or the 26th October earthquakes. Following the Mw 6.6 earthquake, the faults were repeatedly surveyed using TLS, with the first scan collected c. 5 hours following the earthquake. This represents the first known instance where shallow co-seismic slip has been recorded by pre- and post-event terrestrial laser scanning. Displacement continuously measured across GNSS pairs at 1 Hz demonstrates that permanent near field displacement developed across the fault in the immediate seconds following the initiation of the rupture. However, a discrepancy between on-fault field measurements of surface displacement and the GNSS recorded displacement over 1km long baselines hints at a more complex rupture processes and the possibility of high slip gradients in the shallow subsurface. Displacement measured by differential TLS confirms the presence of these shallow slip deficits but suggests that shallow slip gradient may be controlled by the pattern and timing of slip in the preceding earthquakes. Postseismic afterslip captured by repeated TLS surveys hints at more complicated temporal evolution of nearfield afterslip than is currently predicted by logarithmic models for this process.
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Kim, Jinsook; Song, Insil; Jo, Ara; Shin, Joo-Ho; Cho, Hana; Eoff, Robert L; Guengerich, F Peter; Choi, Jeong-Yun
2014-10-20
DNA polymerase (pol) ι is the most error-prone among the Y-family polymerases that participate in translesion synthesis (TLS). Pol ι can bypass various DNA lesions, e.g., N(2)-ethyl(Et)G, O(6)-methyl(Me)G, 8-oxo-7,8-dihydroguanine (8-oxoG), and an abasic site, though frequently with low fidelity. We assessed the biochemical effects of six reported genetic variations of human pol ι on its TLS properties, using the recombinant pol ι (residues 1-445) proteins and DNA templates containing a G, N(2)-EtG, O(6)-MeG, 8-oxoG, or abasic site. The Δ1-25 variant, which is the N-terminal truncation of 25 residues resulting from an initiation codon variant (c.3G > A) and also is the formerly misassigned wild-type, exhibited considerably higher polymerase activity than wild-type with Mg(2+) (but not with Mn(2+)), coinciding with its steady-state kinetic data showing a ∼10-fold increase in kcat/Km for nucleotide incorporation opposite templates (only with Mg(2+)). The R96G variant, which lacks a R96 residue known to interact with the incoming nucleotide, lost much of its polymerase activity, consistent with the kinetic data displaying 5- to 72-fold decreases in kcat/Km for nucleotide incorporation opposite templates either with Mg(2+) or Mn(2+), except for that opposite N(2)-EtG with Mn(2+) (showing a 9-fold increase for dCTP incorporation). The Δ1-25 variant bound DNA 20- to 29-fold more tightly than wild-type (with Mg(2+)), but the R96G variant bound DNA 2-fold less tightly than wild-type. The DNA-binding affinity of wild-type, but not of the Δ1-25 variant, was ∼7-fold stronger with 0.15 mM Mn(2+) than with Mg(2+). The results indicate that the R96G variation severely impairs most of the Mg(2+)- and Mn(2+)-dependent TLS abilities of pol ι, whereas the Δ1-25 variation selectively and substantially enhances the Mg(2+)-dependent TLS capability of pol ι, emphasizing the potential translational importance of these pol ι genetic variations, e.g., individual differences in TLS, mutation, and cancer susceptibility to genotoxic carcinogens.
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2015-01-01
DNA polymerase (pol) ι is the most error-prone among the Y-family polymerases that participate in translesion synthesis (TLS). Pol ι can bypass various DNA lesions, e.g., N2-ethyl(Et)G, O6-methyl(Me)G, 8-oxo-7,8-dihydroguanine (8-oxoG), and an abasic site, though frequently with low fidelity. We assessed the biochemical effects of six reported genetic variations of human pol ι on its TLS properties, using the recombinant pol ι (residues 1–445) proteins and DNA templates containing a G, N2-EtG, O6-MeG, 8-oxoG, or abasic site. The Δ1–25 variant, which is the N-terminal truncation of 25 residues resulting from an initiation codon variant (c.3G > A) and also is the formerly misassigned wild-type, exhibited considerably higher polymerase activity than wild-type with Mg2+ (but not with Mn2+), coinciding with its steady-state kinetic data showing a ∼10-fold increase in kcat/Km for nucleotide incorporation opposite templates (only with Mg2+). The R96G variant, which lacks a R96 residue known to interact with the incoming nucleotide, lost much of its polymerase activity, consistent with the kinetic data displaying 5- to 72-fold decreases in kcat/Km for nucleotide incorporation opposite templates either with Mg2+ or Mn2+, except for that opposite N2-EtG with Mn2+ (showing a 9-fold increase for dCTP incorporation). The Δ1–25 variant bound DNA 20- to 29-fold more tightly than wild-type (with Mg2+), but the R96G variant bound DNA 2-fold less tightly than wild-type. The DNA-binding affinity of wild-type, but not of the Δ1–25 variant, was ∼7-fold stronger with 0.15 mM Mn2+ than with Mg2+. The results indicate that the R96G variation severely impairs most of the Mg2+- and Mn2+-dependent TLS abilities of pol ι, whereas the Δ1–25 variation selectively and substantially enhances the Mg2+-dependent TLS capability of pol ι, emphasizing the potential translational importance of these pol ι genetic variations, e.g., individual differences in TLS, mutation, and cancer susceptibility to genotoxic carcinogens. PMID:25162224
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NASA Astrophysics Data System (ADS)
Rutzinger, Martin; Bremer, Magnus; Ragg, Hansjörg
2013-04-01
Recently, terrestrial laser scanning (TLS) and matching of images acquired by unmanned arial vehicles (UAV) are operationally used for 3D geodata acquisition in Geoscience applications. However, the two systems cover different application domains in terms of acquisition conditions and data properties i.e. accuracy and line of sight. In this study we investigate the major differences between the two platforms for terrain roughness estimation. Terrain roughness is an important input for various applications such as morphometry studies, geomorphologic mapping, and natural process modeling (e.g. rockfall, avalanche, and hydraulic modeling). Data has been collected simultaneously by TLS using an Optech ILRIS3D and a rotary UAV using an octocopter from twins.nrn for a 900 m² test site located in a riverbed in Tyrol, Austria (Judenbach, Mieming). The TLS point cloud has been acquired from three scan positions. These have been registered using iterative closest point algorithm and a target-based referencing approach. For registration geometric targets (spheres) with a diameter of 20 cm were used. These targets were measured with dGPS for absolute georeferencing. The TLS point cloud has an average point density of 19,000 pts/m², which represents a point spacing of about 5 mm. 15 images where acquired by UAV in a height of 20 m using a calibrated camera with focal length of 18.3 mm. A 3D point cloud containing RGB attributes was derived using APERO/MICMAC software, by a direct georeferencing approach based on the aircraft IMU data. The point cloud is finally co-registered with the TLS data to guarantee an optimal preparation in order to perform the analysis. The UAV point cloud has an average point density of 17,500 pts/m², which represents a point spacing of 7.5 mm. After registration and georeferencing the level of detail of roughness representation in both point clouds have been compared considering elevation differences, roughness and representation of different grain sizes. UAV closes the gap between aerial and terrestrial surveys in terms of resolution and acquisition flexibility. This is also true for the data accuracy. Considering these data collection and data quality properties of both systems they have their merit on its own in terms of scale, data quality, data collection speed and application.
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NASA Astrophysics Data System (ADS)
Webster, C. R.; Mahaffy, P. R.; Atreya, S. K.
2016-12-01
In situ measurements of atmospheric methane have been made over a 3-year period at Gale Crater on Mars using the Tunable Laser Spectrometer (TLS) instrument in the Sample Analysis at Mars (SAM) suite on the Curiosity rover. We have reported two important observations: (i) a background level of 0.5 ppbv that is about five times lower than some model predictions based on generation from UV degradation of micro-meteorites or interplanetary dust delivered to the martian surface; (ii) a "spike" of elevated levels of 7 ppbv that were seen1 on four sequential observations over a 2-month period before dropping to background levels. This spike was attributed to an episodic release from a small local source, probably to the north of Gale crater. While the elevated levels of the spike did not return (repeat) one Mars year later, we have seen what appears to be a seasonal variation to the background levels that are all < 1ppbv. The variation ranges from a low of 0.2 ppbv in the northern hemisphere spring to 0.9 ppbv in the northern hemisphere late summer, a change in mixing ratio over a range larger than expected from our current understanding of methane sources and sinks. We will present recent atmospheric methane measurements, and their correlations with a variety of environmental conditions at the location of Curiosity, and discuss the mechanisms that are believed to be contributing to the low background methane signals and their variation. 1 "Mars Methane Detection and Variability at Gale Crater", C. R. Webster et al., Science, 347, 415-417 (2015) and references therein. The research described here was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (NASA).
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Mars Methane at Gale Crater Shows Strong Seasonal Cycle: Updated Results from TLS-SAM on Curiosity
NASA Astrophysics Data System (ADS)
Webster, C. R.; Mahaffy, P. R.; Atreya, S. K.; Flesch, G.; Malespin, C.; McKay, C.; Martinez, G.; Moores, J.; Smith, C. L.; Martin-Torres, F. J.; Gomez-Elvira, J.; Zorzano, M. P.; Wong, M. H.; Trainer, M. G.; Eigenbrode, J. L.; Glavin, D. P.; Steele, A.; Archer, D., Jr.; Sutter, B.; Coll, P. J.; Freissinet, C.; Meslin, P. Y.; Pavlov, A.; Keymeulen, D.; Christensen, L. E.; Gough, R. V.; Schwenzer, S. P.; Navarro-Gonzalez, R.; Pla-García, J.; Rafkin, S. C.; Vicente-Retortillo, Á.; Kahanpää, H.; Viudez-Moreiras, D.; Smith, M. D.; Harri, A. M.; Genzer, M.; Hassler, D.; Lemmon, M. T.; Crisp, J. A.; Zurek, R. W.; Vasavada, A. R.
2017-12-01
In situ measurements of atmospheric methane have been made over a 5-year period at Gale Crater on Mars using the Tunable Laser Spectrometer (TLS) instrument in the Sample Analysis at Mars (SAM) suite on the Curiosity rover. We report two important observations: (i) a background level of mean value of 0.41 ±0.11 (2sem) that is about 5 times lower than some model predictions based on generation from UV degradation of micro-meteorites or interplanetary dust delivered to the martian surface; (ii) "spikes" of elevated levels of 7 ppbv attributed to episodic releases from small local sources, probably to the north of Gale crater1. Reports of plumes, patches or episodic releases of methane in the Martian atmosphere have to date eluded explanation in part because of their lack of repeatability in time or location. Our in situ measurements of the background methane levels exhibit a strong, repeatable seasonal variability. The amplitude of the observed seasonal cycle is 3 times greater than both that expected from the annual sublimation and freezing of polar carbon dioxide and that expected from methane production from ultraviolet (UV) degradation of exogenously-delivered surface material. The observed large seasonal variation in the background, and sporadic observations of higher pulses of 7 ppbv appear consistent with localized small sources of methane release from Martian surface reservoirs that may be occurring throughout the planet. We will present our updated data set, correlations of Mars methane with various other measurements from SAM, REMS, RAD and ChemCam instruments on Curiosity, as well as empirical models of UV surface insolation, and provide preliminary interpretation of results. 1 "Mars Methane Detection and Variability at Gale Crater", C. R. Webster et al., Science, 347, 415-417 (2015) and references therein. The research described here was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (NASA).
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Li, Zhan; Schaefer, Michael; Strahler, Alan; Schaaf, Crystal; Jupp, David
2018-04-06
The Dual-Wavelength Echidna Lidar (DWEL), a full waveform terrestrial laser scanner (TLS), has been used to scan a variety of forested and agricultural environments. From these scanning campaigns, we summarize the benefits and challenges given by DWEL's novel coaxial dual-wavelength scanning technology, particularly for the three-dimensional (3D) classification of vegetation elements. Simultaneous scanning at both 1064 nm and 1548 nm by DWEL instruments provides a new spectral dimension to TLS data that joins the 3D spatial dimension of lidar as an information source. Our point cloud classification algorithm explores the utilization of both spectral and spatial attributes of individual points from DWEL scans and highlights the strengths and weaknesses of each attribute domain. The spectral and spatial attributes for vegetation element classification each perform better in different parts of vegetation (canopy interior, fine branches, coarse trunks, etc.) and under different vegetation conditions (dead or live, leaf-on or leaf-off, water content, etc.). These environmental characteristics of vegetation, convolved with the lidar instrument specifications and lidar data quality, result in the actual capabilities of spectral and spatial attributes to classify vegetation elements in 3D space. The spectral and spatial information domains thus complement each other in the classification process. The joint use of both not only enhances the classification accuracy but also reduces its variance across the multiple vegetation types we have examined, highlighting the value of the DWEL as a new source of 3D spectral information. Wider deployment of the DWEL instruments is in practice currently held back by challenges in instrument development and the demands of data processing required by coaxial dual- or multi-wavelength scanning. But the simultaneous 3D acquisition of both spectral and spatial features, offered by new multispectral scanning instruments such as the DWEL, opens doors to study biophysical and biochemical properties of forested and agricultural ecosystems at more detailed scales.
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NASA Astrophysics Data System (ADS)
Casula, Giuseppe; Fais, Silvana; Giovanna Bianchi, Maria; Cuccuru, Francesco; Ligas, Paola
2015-04-01
The Terrestrial Laser Scanner (TLS) is a modern contactless non-destructive technique (NDT) useful to 3D-model complex-shaped objects with a few hours' field survey. A TLS survey produces very dense point clouds made up of coordinates of point and radiometric information given by the reflectivity parameter i.e. the ratio between the amount of energy emitted by the sensor and the energy reflected by the target object. Modern TLSs used in architecture are phase instruments where the phase difference obtained by comparing the emitted laser pulse with the reflected one is proportional to the sensor-target distance expressed as an integer multiple of the half laser wavelength. TLS data are processed by registering point clouds i.e. by referring them to the same reference frame and by aggregation after a fine registration procedure. The resulting aggregate point cloud can be compared with graphic primitives as single or multiple planes, cylinders or spheres, and the resulting residuals give a morphological map that affords information about the state of conservation of the building materials used in historical or modern buildings, in particular when compared with other NDT techniques. In spite of its great productivity, the TLS technique is limited in that it is unable to penetrate the investigated materials. For this reason both the 3D residuals map and the reflectivity map need to be correlated with the results of other NDT techniques such as the ultrasonic method, and a complex study of the composition of building materials is also necessary. The application of a methodology useful to evaluate the quality of stone building materials and locate altered or damaged zones is presented in this study based on the integrated application of three independent techniques, two non destructive such as the TLS and the ultrasonic techniques in the 24-54 kHz range, and a third to analyze the petrographical characteristics of the stone materials, mainly the texture, with optical and scanning electronic microscopy (SEM). A very interesting case study is presented on a carbonate stone door of great architectural and historical interest, well suited to a high definition survey . This architectural element is inside the "Palazzo di Città" museum in the historical center of the Town of Cagliari, Sardinia (Italy). The integrated application of TLS and in situ and laboratory ultrasonic techniques, enhanced by the knowledge of the petrographic characteristics of the rocks, improves the diagnostic process and affords reliable information on the state of conservation of the stones used to build it. The integrated use of the above non destructive techniques also provides suitable data for a possible restoration and future preservation. Acknowledgments: This work was financially supported by Sardinian Local Administration (RAS - LR 7,August 2007, n.7, Promotion of Scientific Research and Innovation in Sardinia - Italy, Responsible Scientist: S.Fais).
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NASA Astrophysics Data System (ADS)
Liou, M. S.; Li, H. C.; Huang, S. K.; Guan, B. T.
2017-12-01
Dendrochronologies built from precisely dated annual rings have shown to record the regional bomb pulse and the C-14 concentration variations caused by local events. In this study, we collected teak trees Tectona grandis near the Lake Taal, Central Philippines in 2011 for dendrochronological analysis and radiocarbon dating. The tree-ring sample contains 90 rings dated from 1922 to 2011. Currently, 28 selected subsamples have been measured by AMS 14C on bulk carbon with a few samples on holocellulose. The 14C results of the samples indicate that: 1) the results of AMS 14C dating between holocellulose and whole wood from the same ring are similar, so we select whole wood for AMS 14C dating. 2) The nuclear bomb 14C pulse was clearly recorded in the Tectona grandis growth rings. The Δ14C values rose dramatically in 1960 and reached a maximum of 692‰ in 1966. The magnitude and the peak year of the bomb curve in the Tectona grandis tree-ring record are comparable to other published tree-ring records in the tropical regions. 3) The Δ14C values suddenly dropped in 1950, 1964 and 1968, probably affected by CO2 gas releasing due to the Taal volcanic activities. Further study on the tree-ring 14C dating will allow us to evaluate the bomb pulse trends more precisely, and the volcanic activities of Pinatubo and Taal Volcanoes. The tree-ring Δ14C record not only confirms existence of the bomb curve in Taal Lake area, but also allows us compare to the Δ14C record in the lake sediment for chronological construction. A 120-cm gravity core, TLS-2, collected from Lake Taal in 2008, shows the nuclear bomb carbon curve in the TOC of the core. However, the magnitude of the nuclear bomb 14C pulse in the TOC of TLS-2 is much lower than that in the tree-ring records, due to mixing effect of different organic carbon sources, smoothing effect of 14CO2 in multiple years plant growths, local old CO2 emission from volcanic activity, degassing from the lake bottom, and industrial and city pollutions. Nevertheless, by comparing the bomb curves, the chronology of Core TLS-2 is about 60 years with a mean sedimentary rate of 2 cm/yr.
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The Use of Computer Vision Algorithms for Automatic Orientation of Terrestrial Laser Scanning Data
NASA Astrophysics Data System (ADS)
Markiewicz, Jakub Stefan
2016-06-01
The paper presents analysis of the orientation of terrestrial laser scanning (TLS) data. In the proposed data processing methodology, point clouds are considered as panoramic images enriched by the depth map. Computer vision (CV) algorithms are used for orientation, which are applied for testing the correctness of the detection of tie points and time of computations, and for assessing difficulties in their implementation. The BRISK, FASRT, MSER, SIFT, SURF, ASIFT and CenSurE algorithms are used to search for key-points. The source data are point clouds acquired using a Z+F 5006h terrestrial laser scanner on the ruins of Iłża Castle, Poland. Algorithms allowing combination of the photogrammetric and CV approaches are also presented.
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NASA Astrophysics Data System (ADS)
Bell, L. J.; Nerem, R. S.; Williams, K.; Meertens, C.; Lestak, L.; Masters, D.
2014-12-01
Sea level is rising in response to climate change. Currently the global mean rate is a little over 3 mm/year, but it is expected to accelerate significantly over this century. This will have a profound impact on coastal populations and infrastructure, including NASA centers and facilities. A detailed study proposed by the University of Colorado's Center for Astrodynamics Research on the impact of sea level rise on several of NASA's most vulnerable facilities was recently funded by NASA. Individual surveys at several high-risk NASA centers were conducted and used as case studies for a broader investigation that needs to be done for coastal infrastructure around the country. The first two years of this study included implementing and conducting a terrestrial laser scanning (TLS) and GPS survey at Kennedy Space Center, Cape Canaveral, Florida, Wallops Flight Facility, Wallops Island, Virginia, Langley Research Center, Hampton, Virginia, and Ames Research Center, Moffett Field, California. We are currently using airborne LiDAR (Light Detection and Ranging) data and TLS (Terrestrial Laser Scanning) data to construct detailed digital elevation models (DEMs) of the facilities that we have assessed. The TLS data acquired at each center provides a very dense point cloud that is being used to improve the detail and accuracy of the digital elevation models currently available. We are also using GPS data we acquired at each center to assess the rate of vertical land movement at the facilities and to tie the DEM to tide gauges and other reference points. With completed, detailed DEMs of the topography and facilities at each center, a series of simple inundation models will then be applied to each area. We will use satellite altimeter data from TOPEX, Jason-1, and Jason-2 to assess the sea level changes observed near these NASA facilities over the last 20 years along with sea level projections from global climate models (GCMs) and semi-empirical projections to make detailed maps of sea level inundation through and up to the years 2050 and 2100 for varying amounts of sea level rise. We will also work with other selected investigators to assess the effects of tidal variations and storm surge when coupled with changes in mean sea level, as storm surge is likely when initial damage due to sea level rise will occur.
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NASA Technical Reports Server (NTRS)
Stern, J. C.; Malespin, C. A.; Eigenbrode, J.; Graham, H. V.; Archer, P. D.; Brunner, A.; Freissinet, C.; Franz, H. B.; Fuentes, J.; Glavin, D. P.;
2014-01-01
The combustion experiment on the Sample Analysis at Mars (SAM) suite on Curiosity will heat a sample of Mars regolith in the presence of oxygen and measure composition of the evolved gases using quadrupole mass spectrometry (QMS) and tunable laser spectrometry (TLS). QMS will enable detection of combustion products such as CO, CO2, NO, and other oxidized species, while TLS will enable precision measurements of the abundance and carbon isotopic composition (delta C-13) of the evolved CO2 and hydrogen isotopic composition (delta D) of H2O. SAM will perform a two-step combustion to isolate combustible materials below approx. 550 C and above approx. 550 C.
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Time limited field of regard search
NASA Astrophysics Data System (ADS)
Flug, Eric; Maurer, Tana; Nguyen, Oanh-Tho
2005-05-01
Recent work by the US Army RDECOM CERDEC Night Vision and Electronic Sensors Directorate (NVESD) has led to the Time-Limited Search (TLS) model, which has given new formulations for the field of view (FOV) search times. The next step in the evaluation of the overall search model (ACQUIRE) is to apply these parameters to the field of regard (FOR) model. Human perception experiments were conducted using synthetic imagery developed at NVESD. The experiments were competitive player-on-player search tests with the intention of imposing realistic time constraints on the observers. FOR detection probabilities, search times, and false alarm data are analyzed and compared to predictions using both the TLS model and ACQUIRE.
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A teaching-learning sequence about weather map reading
NASA Astrophysics Data System (ADS)
Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine
2017-07-01
In this paper a teaching-learning sequence (TLS) introducing pre-service elementary teachers (PET) to weather map reading, with emphasis on wind assignment, is presented. The TLS includes activities about recognition of wind symbols, assignment of wind direction and wind speed on a weather map and identification of wind characteristics in a weather forecast. Sixty PET capabilities and difficulties in understanding weather maps were investigated, using inquiry-based learning activities. The results show that most PET became more capable of reading weather maps and assigning wind direction and speed on them. Our results also show that PET could be guided to understand meteorology concepts useful in everyday life and in teaching their future students.
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Unique transposon landscapes are pervasive across Drosophila melanogaster genomes
Rahman, Reazur; Chirn, Gung-wei; Kanodia, Abhay; Sytnikova, Yuliya A.; Brembs, Björn; Bergman, Casey M.; Lau, Nelson C.
2015-01-01
To understand how transposon landscapes (TLs) vary across animal genomes, we describe a new method called the Transposon Insertion and Depletion AnaLyzer (TIDAL) and a database of >300 TLs in Drosophila melanogaster (TIDAL-Fly). Our analysis reveals pervasive TL diversity across cell lines and fly strains, even for identically named sub-strains from different laboratories such as the ISO1 strain used for the reference genome sequence. On average, >500 novel insertions exist in every lab strain, inbred strains of the Drosophila Genetic Reference Panel (DGRP), and fly isolates in the Drosophila Genome Nexus (DGN). A minority (<25%) of transposon families comprise the majority (>70%) of TL diversity across fly strains. A sharp contrast between insertion and depletion patterns indicates that many transposons are unique to the ISO1 reference genome sequence. Although TL diversity from fly strains reaches asymptotic limits with increasing sequencing depth, rampant TL diversity causes unsaturated detection of TLs in pools of flies. Finally, we show novel transposon insertions negatively correlate with Piwi-interacting RNA (piRNA) levels for most transposon families, except for the highly-abundant roo retrotransposon. Our study provides a useful resource for Drosophila geneticists to understand how transposons create extensive genomic diversity in fly cell lines and strains. PMID:26578579
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Paynter, Ian; Genest, Daniel; Peri, Francesco; Schaaf, Crystal
2018-04-06
Volumetric models with known biases are shown to provide bounds for the uncertainty in estimations of volume for ecologically interesting objects, observed with a terrestrial laser scanner (TLS) instrument. Bounding cuboids, three-dimensional convex hull polygons, voxels, the Outer Hull Model and Square Based Columns (SBCs) are considered for their ability to estimate the volume of temperate and tropical trees, as well as geomorphological features such as bluffs and saltmarsh creeks. For temperate trees, supplementary geometric models are evaluated for their ability to bound the uncertainty in cylinder-based reconstructions, finding that coarser volumetric methods do not currently constrain volume meaningfully, but may be helpful with further refinement, or in hybridized models. Three-dimensional convex hull polygons consistently overestimate object volume, and SBCs consistently underestimate volume. Voxel estimations vary in their bias, due to the point density of the TLS data, and occlusion, particularly in trees. The response of the models to parametrization is analysed, observing unexpected trends in the SBC estimates for the drumlin dataset. Establishing that this result is due to the resolution of the TLS observations being insufficient to support the resolution of the geometric model, it is suggested that geometric models with predictable outcomes can also highlight data quality issues when they produce illogical results.
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Development of Image Segmentation Methods for Intracranial Aneurysms
Qian, Yi; Morgan, Michael
2013-01-01
Though providing vital means for the visualization, diagnosis, and quantification of decision-making processes for the treatment of vascular pathologies, vascular segmentation remains a process that continues to be marred by numerous challenges. In this study, we validate eight aneurysms via the use of two existing segmentation methods; the Region Growing Threshold and Chan-Vese model. These methods were evaluated by comparison of the results obtained with a manual segmentation performed. Based upon this validation study, we propose a new Threshold-Based Level Set (TLS) method in order to overcome the existing problems. With divergent methods of segmentation, we discovered that the volumes of the aneurysm models reached a maximum difference of 24%. The local artery anatomical shapes of the aneurysms were likewise found to significantly influence the results of these simulations. In contrast, however, the volume differences calculated via use of the TLS method remained at a relatively low figure, at only around 5%, thereby revealing the existence of inherent limitations in the application of cerebrovascular segmentation. The proposed TLS method holds the potential for utilisation in automatic aneurysm segmentation without the setting of a seed point or intensity threshold. This technique will further enable the segmentation of anatomically complex cerebrovascular shapes, thereby allowing for more accurate and efficient simulations of medical imagery. PMID:23606905
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Suppression of tunneling two-level systems in ultrastable glasses of indomethacin.
Pérez-Castañeda, Tomás; Rodríguez-Tinoco, Cristian; Rodríguez-Viejo, Javier; Ramos, Miguel A
2014-08-05
Glasses and other noncrystalline solids exhibit thermal and acoustic properties at low temperatures anomalously different from those found in crystalline solids, and with a remarkable degree of universality. Below a few kelvin, these universal properties have been successfully interpreted using the tunneling model, which has enjoyed (almost) unanimous recognition for decades. Here we present low-temperature specific-heat measurements of ultrastable glasses of indomethacin that clearly show the disappearance of the ubiquitous linear contribution traditionally ascribed to the existence of tunneling two-level systems (TLS). When the ultrastable thin-film sample is thermally converted into a conventional glass, the material recovers a typical amount of TLS. This remarkable suppression of the TLS found in ultrastable glasses of indomethacin is argued to be due to their particular anisotropic and layered character, which strongly influences the dynamical network and may hinder isotropic interactions among low-energy defects, rather than to the thermodynamic stabilization itself. This explanation may lend support to the criticisms by Leggett and others [Yu CC, Leggett AJ (1988) Comments Condens Matter Phys 14(4):231-251; Leggett AJ, Vural DC (2013) J Phys Chem B 117(42):12966-12971] to the standard tunneling model, although more experiments in different kinds of ultrastable glasses are needed to ascertain this hypothesis.
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Bounding uncertainty in volumetric geometric models for terrestrial lidar observations of ecosystems
Genest, Daniel; Peri, Francesco; Schaaf, Crystal
2018-01-01
Volumetric models with known biases are shown to provide bounds for the uncertainty in estimations of volume for ecologically interesting objects, observed with a terrestrial laser scanner (TLS) instrument. Bounding cuboids, three-dimensional convex hull polygons, voxels, the Outer Hull Model and Square Based Columns (SBCs) are considered for their ability to estimate the volume of temperate and tropical trees, as well as geomorphological features such as bluffs and saltmarsh creeks. For temperate trees, supplementary geometric models are evaluated for their ability to bound the uncertainty in cylinder-based reconstructions, finding that coarser volumetric methods do not currently constrain volume meaningfully, but may be helpful with further refinement, or in hybridized models. Three-dimensional convex hull polygons consistently overestimate object volume, and SBCs consistently underestimate volume. Voxel estimations vary in their bias, due to the point density of the TLS data, and occlusion, particularly in trees. The response of the models to parametrization is analysed, observing unexpected trends in the SBC estimates for the drumlin dataset. Establishing that this result is due to the resolution of the TLS observations being insufficient to support the resolution of the geometric model, it is suggested that geometric models with predictable outcomes can also highlight data quality issues when they produce illogical results. PMID:29503722
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Kedzierski, Michal; Fryskowska, Anna
2014-01-01
Visualization techniques have been greatly developed in the past few years. Three-dimensional models based on satellite and aerial imagery are now being enhanced by models generated using Aerial Laser Scanning (ALS) data. The most modern of such scanning systems have the ability to acquire over 50 points per square meter and to register a multiple echo, which allows the reconstruction of the terrain together with the terrain cover. However, ALS data accuracy is less than 10 cm and the data is often incomplete: there is no information about ground level (in most scanning systems), and often around the facade or structures which have been covered by other structures. However, Terrestrial Laser Scanning (TLS) not only acquires higher accuracy data (1–5 cm) but is also capable of registering those elements which are incomplete or not visible using ALS methods (facades, complicated structures, interiors, etc.). Therefore, to generate a complete 3D model of a building in high Level of Details, integration of TLS and ALS data is necessary. This paper presents the wavelet-based method of processing and integrating data from ALS and TLS. Methods of choosing tie points to combine point clouds in different datum will be analyzed. PMID:25004157
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Wu, Zhen; Jia, Pei-Qiao; Hu, Zhong-Jun; Chen, Li-Qiao; Gu, Zhi-Min; Liu, Qi-Gen
2012-03-01
Based on the 2008-2009 survey data of fishery resources and eco-environment of Fenshuijiang Reservoir, a mass balance model for the Reservoir ecosystem was constructed by Ecopath with Ecosim software. The model was composed of 14 functional groups, including silver carp, bighead carp, Hemibarbus maculates, Cutler alburnus, Microlepis and other fishes, Oligochaeta, aquatic insect, zooplankton, phytoplankton, and organic detritus, etc. , being able to better simulate Fenshuijiang Reservoir ecosystem. In this ecosystem, there were five trophic levels (TLs), and the nutrient flow mainly occurred in the first three TLs. Grazing and detritus food chains were the main energy flows in the ecosystem, but the food web was simpler and susceptible to be disturbed by outer environment. The transfer efficiency at lower TLs was relatively low, indicating that the ecosystem had a lower capability in energy utilization, and the excessive stock of nutrients in the ecosystem could lead to eutrophication. The lower connectance index, system omnivory index, Finn' s cycled index, and Finn's mean path length demonstrated that the ecosystem was unstable, while the high ecosystem property indices such as Pp/R and Pp/B showed that the ecosystem was immature and highly productive. It was suggested that Fenshuijiang Reservoir was still a developing new reservoir ecosystem, with a very short history and comparatively high primary productivity.
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Kedzierski, Michal; Fryskowska, Anna
2014-07-07
Visualization techniques have been greatly developed in the past few years. Three-dimensional models based on satellite and aerial imagery are now being enhanced by models generated using Aerial Laser Scanning (ALS) data. The most modern of such scanning systems have the ability to acquire over 50 points per square meter and to register a multiple echo, which allows the reconstruction of the terrain together with the terrain cover. However, ALS data accuracy is less than 10 cm and the data is often incomplete: there is no information about ground level (in most scanning systems), and often around the facade or structures which have been covered by other structures. However, Terrestrial Laser Scanning (TLS) not only acquires higher accuracy data (1-5 cm) but is also capable of registering those elements which are incomplete or not visible using ALS methods (facades, complicated structures, interiors, etc.). Therefore, to generate a complete 3D model of a building in high Level of Details, integration of TLS and ALS data is necessary. This paper presents the wavelet-based method of processing and integrating data from ALS and TLS. Methods of choosing tie points to combine point clouds in different datum will be analyzed.
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Terrestrial Laser Scanning for Coastal Geomorphologic Research in Western Greece
NASA Astrophysics Data System (ADS)
Hoffmeister, D.; Tilly, N.; Curdt, C.; Aasen, H.; Ntageretzis, K.; Hadler, H.; Willershäuser, T.; Vött, A.; Bareth, G.
2012-07-01
We used terrestrial laser scanning (TLS) for (i) accurate volume estimations of dislocated boulders moved by high-energy impacts and for (ii) monitoring of annual coastal changes. In this contribution, we present three selected sites in Western Greece that were surveyed during a time span of four years (2008-2011). The Riegl LMS-Z420i laser scanner was used in combination with a precise DGPS system (Topcon HiPer Pro). Each scan position and a further target were recorded for georeferencing and merging of the point clouds. For the annual detection of changes, reference points for the base station of the DGPS system were marked. Our studies show that TLS is capable to accurately estimate volumes of boulders, which were dislocated and deposited inland from the littoral zone. The mass of each boulder was calculated from this 3D-reconstructed volume and according density data. The masses turned out to be considerably smaller than common estimated masses based on tape-measurements and according density approximations. The accurate mass data was incorporated into wave transport equations, which estimate wave velocities of high-energy impacts. As expected, these show smaller wave velocities, due to the incorporated smaller mass. Furthermore, TLS is capable to monitor annual changes on coastal areas. The changes are detected by comparing high resolution digital elevation models from every year. On a beach site, larger areas of sea-weed and sandy sediments are eroded. In contrast, bigger gravel with 30-50 cm diameter was accumulated. At the other area with bigger boulders and a different coastal configuration only slightly differences were detectable. In low-lying coastal areas and along recent beaches, post-processing of point clouds turned out to be more difficult, due to noise effects by water and shadowing effects. However, our studies show that the application of TLS in different littoral settings is an appropriate and promising tool. The combination of both instruments worked well and the annual positioning procedure with own survey point is precose for this purpose.
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Automating slope monitoring in mines with terrestrial lidar scanners
NASA Astrophysics Data System (ADS)
Conforti, Dario
2014-05-01
Static terrestrial laser scanners (TLS) have been an important component of slope monitoring for some time, and many solutions for monitoring the progress of a slide have been devised over the years. However, all of these solutions have required users to operate the lidar equipment in the field, creating a high cost in time and resources, especially if the surveys must be performed very frequently. This paper presents a new solution for monitoring slides, developed using a TLS and an automated data acquisition, processing and analysis system. In this solution, a TLS is permanently mounted within sight of the target surface and connected to a control computer. The control software on the computer automatically triggers surveys according to a user-defined schedule, parses data into point clouds, and compares data against a baseline. The software can base the comparison against either the original survey of the site or the most recent survey, depending on whether the operator needs to measure the total or recent movement of the slide. If the displacement exceeds a user-defined safety threshold, the control computer transmits alerts via SMS text messaging and/or email, including graphs and tables describing the nature and size of the displacement. The solution can also be configured to trigger the external visual/audio alarm systems. If the survey areas contain high-traffic areas such as roads, the operator can mark them for exclusion in the comparison to prevent false alarms. To improve usability and safety, the control computer can connect to a local intranet and allow remote access through the software's web portal. This enables operators to perform most tasks with the TLS from their office, including reviewing displacement reports, downloading survey data, and adjusting the scan schedule. This solution has proved invaluable in automatically detecting and alerting users to potential danger within the monitored areas while lowering the cost and work required for monitoring. An explanation of the entire system and a post-acquisition data demonstration will be presented.
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A switch between DNA polymerases δ and λ promotes error-free bypass of 8-oxo-G lesions
Markkanen, Enni; Castrec, Benoît; Villani, Giuseppe; Hübscher, Ulrich
2012-01-01
7,8-Dihydro-8-oxoguanine (8-oxo-G) is a highly abundant and mutagenic lesion. Replicative DNA polymerases (pols) are slowed down at 8-oxo-G and insert both correct cytosine (C) and incorrect adenine (A) opposite 8-oxo-G, but they preferentially extend A:8-oxo-G mispairs. Nevertheless, 8-oxo-G bypass is fairly accurate in vivo. Thus, the question how correct bypass of 8-oxo-G lesions is accomplished despite the poor extension of C:8-oxo-G base pairs by replicative pols remains unanswered. Here we show that replicative pol δ pauses in front of 8-oxo-G and displays difficulties extending from correct C:8-oxo-G in contrast to extension from incorrect A:8-oxo-G. This leads to stalling of pol δ at 8-oxo-G after incorporation of correct C. This stalling at C:8-oxo-G can be overcome by a switch from pol δ to pols λ, β, or η, all of which are able to assist pol δ in 8-oxo-G bypass by translesion synthesis (TLS). Importantly, however, only pol λ selectively catalyzes the correct TLS past 8-oxo-G, whereas pols β and η show no selectivity and even preferentially enhance incorrect TLS. The selectivity of pol λ to promote the correct bypass depends on its N-terminal domain. Furthermore, pol λ−/− mouse embryonic fibroblast extracts display reduced 8-oxo-G TLS. Finally, the correct bypass of 8-oxo-G in gapped plasmids in mouse embryonic fibroblasts and HeLa cells is promoted in the presence of pol λ. Our findings suggest that even though 8-oxo-G is not a blocking lesion per se, correct replication over 8-oxo-G is promoted by a pol switch between pols δ and λ. PMID:23175785
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On the surface roughness of a braidplain in an Alpine proglacial area
NASA Astrophysics Data System (ADS)
Baewert, H.; Morche, D.; Culha, C.
2014-12-01
Surface roughness is a crucial parameter of studies concerning (paleo) flood peak discharge estimation and related factors (cf. stream power). Usually, the analysis requires preliminary knowledge of grain size distribution of the study site. However, in some cases this is impractical, especially when investigating large areas, or even impossible due to inaccessibility. In addition, the particles in the channel are usually hidden by other particles or incorporated into finer sediment. Therefore, removing particles from the channel bottom is not suitable, because it falsifies the results. Here, the application of noninvasive terrestrial laser scanning (TLS) offers new possibilities. The indirect recording of the surface leads to a significant reduction of the workload. Furthermore, form roughness and burial/imbrication are taken into account. However, there are some disadvantages in using TLS. The resolution of the TLS data is a limiting factor when defining surface roughness, because coarseness at finer detail will not be captured at lower resolution (Baewert et al. 2014). There are numerous other factors, which may alter the results. We would like to further understand how the noise associated with TLS data alters the outcome and whether the interpolation method has an influence. This study focuses on the latter two issues. For this purpose, a braidplain in the forefield of the glacier Gepatschferner in Austria was surveyed using a terrestrial laser scanner. The images were taken from different angles and with different resolutions. Subsequently, the outliers are removed from the point cloud in order to investigate the influence of the noise. Thinning the point cloud is another method used to understand the effects of the point density. References Baewert, H., Bimböse, M., Bryk, A., Rascher, E., Schmidt, K.-H. & Morche, D. (2014): Roughness determination of coarse grained alpine river bed surfaces using Terrestrial Laser Scanning data. - Zeitschrift für Geomorphologie N.F. 58(1): 81-95. Doi: 10.1127/0372-8854/2013/S-00127 .
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NASA Astrophysics Data System (ADS)
Muir, J.; Phinn, S. R.; Armston, J.; Scarth, P.; Eyre, T.
2014-12-01
Coarse woody debris (CWD) provides important habitat for many species and plays a vital role in nutrient cycling within an ecosystem. In addition, CWD makes an important contribution to forest biomass and fuel loads. Airborne or space based remote sensing instruments typically do not detect CWD beneath the forest canopy. Terrestrial laser scanning (TLS) provides a ground based method for three-dimensional (3-D) reconstruction of surface features and CWD. This research produced a 3-D reconstruction of the ground surface and automatically classified coarse woody debris from registered TLS scans. The outputs will be used to inform the development of a site-based index for the assessment of forest condition, and quantitative assessments of biomass and fuel loads. A survey grade terrestrial laser scanner (Riegl VZ400) was used to scan 13 positions, in an open eucalypt woodland site at Karawatha Forest Park, near Brisbane, Australia. Scans were registered, and a digital surface model (DSM) produced using an intensity threshold and an iterative morphological filter. The DSMs produced from single scans were compared to the registered multi-scan point cloud using standard error metrics including: Root Mean Squared Error (RMSE), Mean Squared Error (MSE), range, absolute error and signed error. In addition the DSM was compared to a Digital Elevation Model (DEM) produced from Airborne Laser Scanning (ALS). Coarse woody debris was subsequently classified from the DSM using laser pulse properties, including: width and amplitude, as well as point spatial relationships (e.g. nearest neighbour slope vectors). Validation of the coarse woody debris classification was completed using true-colour photographs co-registered to the TLS point cloud. The volume and length of the coarse woody debris was calculated from the classified point cloud. A representative network of TLS sites will allow for up-scaling to large area assessment using airborne or space based sensors to monitor forest condition, biomass and fuel loads.
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NASA Astrophysics Data System (ADS)
Schneider, Bastian; Hoffmann, Gösta
2017-04-01
The shores of the Northern Indian Ocean were exposed to extreme wave inundation in the past. Two relevant hazards, storm surges triggered by tropical cyclones and tsunamis, are known to occur in the region but are rarely instrumentally recorded. Various sediment deposits along the coast are the only remnants of those past events. A profound understanding of return periods and magnitudes of past events is essential for developing land-use planning and risk mitigation measures in Oman and neighboring countries. A detailed investigation of these deposits, in this case primarily blocks and boulder trains but also fine grained sediments, provides insight on parameters such as wave height and inundation distance. These parameters can then be used for modeling inundation scenarios superimposed on modern infrastructure. We are investigating the spatial 3D-distribution of the extreme wave event sediments along the coastline through a high-precision survey of the event deposits using a Faro Focus 3D X330 TLS. A TLS is capable of recording high-detail and colored point clouds, which allows detailed measurements and has proved to be a powerful tool in geosciences. These multi-parameter point clouds in combination with dating results serve as a base for extreme wave event return period and magnitude estimations. Relevant parameters on large sediments are size, shape, volume, mass as well as relative arrangement, sorting and orientation. Furthermore, the TLS data is used to distinguish between the various boulder lithologies using a multi-scale supervised classification. Surface roughness as a result of weathering can serve as an indicator for exposure time of boulders and hint on various generations of extreme wave events. The distribution of the boulders relative to the site they were quarried from indicates on the flow direction of the waves and consequently might help to distinguish between storm and tsunami waves.
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In Situ Quantification of Experimental Ice Accretion on Tree Crowns Using Terrestrial Laser Scanning
Nock, Charles A.; Greene, David; Delagrange, Sylvain; Follett, Matt; Fournier, Richard; Messier, Christian
2013-01-01
In the eastern hardwood forests of North America ice storms are an important disturbance event. Ice storms strongly influence community dynamics as well as urban infrastructure via catastrophic branch failure; further, the severity and frequency of ice storms are likely to increase with climate change. However, despite a long-standing interest into the effects of freezing rain on forests, the process of ice accretion and thus ice loading on branches remains poorly understood. This is because a number of challenges have prevented in situ measurements of ice on branches, including: 1) accessing and measuring branches in tall canopies, 2) limitations to travel during and immediately after events, and 3) the unpredictability of ice storms. Here, utilizing a novel combination of outdoor experimental icing, manual measurements and terrestrial laser scanning (TLS), we perform the first in situ measurements of ice accretion on branches at differing heights in a tree crown and with increasing duration of exposure. We found that TLS can reproduce both branch and iced branch diameters with high fidelity, but some TLS instruments do not detect ice. Contrary to the expectations of ice accretion models, radial accretion varied sharply within tree crowns. Initially, radial ice accretion was similar throughout the crown, but after 6.5 hours of irrigation (second scanning) radial ice accretion was much greater on upper branches than on lower (∼factor of 3). The slope of the change in radial ice accretion along branches increased with duration of exposure and was significantly greater at the second scanning compared to the first. We conclude that outdoor icing experiments coupled with the use of TLS provide a robust basis for evaluation of models of ice accretion and breakage in tree crowns, facilitating estimation of the limiting breaking stress of branches by accurate measurements of ice loads. PMID:23741409
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Huang, Yuanwei; Zhang, Yanting; Li, Ke; Zhao, Jin
2016-01-01
A previous time-location sampling survey (TLS) was performed in 2008 to evaluate the HIV or syphilis infection rate among male sex workers (MSWs) and non-commercial men who have sex with men (ncMSM) in Shenzhen, China. This is a second TLS performed in 2014. This article describes the findings and changes in the prevalence of HIV and syphilis. TLS was used to collect information as a second cross-sectional survey to an earlier TLS assessment. Data on behavior (e.g., sexual history and sexual behavior) were analyzed. Blood specimens were drawn for HIV and syphilis testing. To determine the changes in the prevalence of HIV and syphilis, we analyzed these results and compared them to the results of our first survey. A total of 965 participants were recruited, including 489 MSWs and 476 ncMSM. Overall, the prevalence of HIV was 9.7%: 2.9% for MSWs and 16.8% for ncMSM (P<0.001). 10.9% of the 965 participants tested positive for syphilis: 4.5% among MSWs and 17.4% among ncMSM (P<0.001). The HIV prevalence in MSWs decreased from 4.5% in 2008 to 2.9% in 2014 (P = 0.143) but increased in ncMSM (7.0% in 2008 vs 16.8% in 2014, P<0.001). Decreased syphilis rates were observed in both MSWs (12.9% in 2008 vs 4.5% in 2014, P<0.001) and ncMSM (20.2% in 2008 vs 17.4% in 2014, P = 0.221). Overall, there was a decline in the prevalence of HIV and syphilis in MSWs but not in ncMSM. The study indicated the need for continued efforts to improve public health, particularly to counter the rising rate of HIV in ncMSM.
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NASA Astrophysics Data System (ADS)
Mangla, Rohit; Kumar, Shashi; Nandy, Subrata
2016-05-01
SAR and LiDAR remote sensing have already shown the potential of active sensors for forest parameter retrieval. SAR sensor in its fully polarimetric mode has an advantage to retrieve scattering property of different component of forest structure and LiDAR has the capability to measure structural information with very high accuracy. This study was focused on retrieval of forest aboveground biomass (AGB) using Terrestrial Laser Scanner (TLS) based point clouds and scattering property of forest vegetation obtained from decomposition modelling of RISAT-1 fully polarimetric SAR data. TLS data was acquired for 14 plots of Timli forest range, Uttarakhand, India. The forest area is dominated by Sal trees and random sampling with plot size of 0.1 ha (31.62m*31.62m) was adopted for TLS and field data collection. RISAT-1 data was processed to retrieve SAR data based variables and TLS point clouds based 3D imaging was done to retrieve LiDAR based variables. Surface scattering, double-bounce scattering, volume scattering, helix and wire scattering were the SAR based variables retrieved from polarimetric decomposition. Tree heights and stem diameters were used as LiDAR based variables retrieved from single tree vertical height and least square circle fit methods respectively. All the variables obtained for forest plots were used as an input in a machine learning based Random Forest Regression Model, which was developed in this study for forest AGB estimation. Modelled output for forest AGB showed reliable accuracy (RMSE = 27.68 t/ha) and a good coefficient of determination (0.63) was obtained through the linear regression between modelled AGB and field-estimated AGB. The sensitivity analysis showed that the model was more sensitive for the major contributed variables (stem diameter and volume scattering) and these variables were measured from two different remote sensing techniques. This study strongly recommends the integration of SAR and LiDAR data for forest AGB estimation.
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Yoon, Jung-Hoon; Roy Choudhury, Jayati; Park, Jeseong; Prakash, Satya; Prakash, Louise
2017-11-10
N3-Methyladenine (3-MeA) is formed in DNA by reaction with S -adenosylmethionine, the reactive methyl donor, and by reaction with alkylating agents. 3-MeA protrudes into the DNA minor groove and strongly blocks synthesis by replicative DNA polymerases (Pols). However, the mechanisms for replicating through this lesion in human cells remain unidentified. Here we analyzed the roles of translesion synthesis (TLS) Pols in the replication of 3-MeA-damaged DNA in human cells. Because 3-MeA has a short half-life in vitro , we used the stable 3-deaza analog, 3-deaza-3-methyladenine (3-dMeA), which blocks the DNA minor groove similarly to 3-MeA. We found that replication through the 3-dMeA adduct is mediated via three different pathways, dependent upon Polι/Polκ, Polθ, and Polζ. As inferred from biochemical studies, in the Polι/Polκ pathway, Polι inserts a nucleotide (nt) opposite 3-dMeA and Polκ extends synthesis from the inserted nt. In the Polθ pathway, Polθ carries out both the insertion and extension steps of TLS opposite 3-dMeA, and in the Polζ pathway, Polζ extends synthesis following nt insertion by an as yet unidentified Pol. Steady-state kinetic analyses indicated that Polι and Polθ insert the correct nt T opposite 3-dMeA with a much reduced catalytic efficiency and that both Pols exhibit a high propensity for inserting a wrong nt opposite this adduct. However, despite their low fidelity of synthesis opposite 3-dMeA, TLS opposite this lesion replicates DNA in a highly error-free manner in human cells. We discuss the implications of these observations for TLS mechanisms in human cells. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.
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Anderson, Kyle E.; Glenn, Nancy; Spaete, Lucas; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.
2017-01-01
Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor’s line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner’s line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.
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Anderson, Kyle E; Glenn, Nancy F; Spaete, Lucas P; Shinneman, Douglas J; Pilliod, David S; Arkle, Robert S; McIlroy, Susan K; Derryberry, DeWayne R
2017-10-23
Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor's line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner's line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.
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NASA Astrophysics Data System (ADS)
Koma, Zsófia; Székely, Balázs; Dorninger, Peter; Rasztovits, Sascha; Roncat, Andreas; Zámolyi, András; Krawczyk, Dominik; Pfeifer, Norbert
2014-05-01
Aerial imagery derivatives collected by the Unmanned Aerial Vehicle (UAV) technology can be used as input for generation of high resolution digital terrain model (DTM) data along with the Terrestrial Laser Scanning (TLS) method. Both types of datasets are suitable for detailed geological and geomorphometric analysis, because the data provide micro-topographical and structural geological information. Our study focuses on the comparison of the possibilities of the extracted geological information, which is available from high resolution DTMs. This research attempts to find an answer which technology is more effective for geological and geomorphological analysis. The measurements were taken at the Doren landslide (Vorarlberg, Austria), a complex rotational land slide situated in the Alpine molasse foreland. Several formations (Kojen Formation, Würmian glacial moraine sediments, Weissach Formation) were tectonized there in the course of the alpine orogeny (Oberhauser et al, 2007). The typical fault direction is WSW-ENE. The UAV measurements that were carried out simultaneously with the TLS campaign focused on the landslide scarp. The original image resolution was 4 mm/pixel. Image matching was implemented in pyramid level 2 and the achieved resolution of the DTM was 0.05 meter. The TLS dataset includes 18 scan positions and more than 300 million points for the whole landslide area. The achieved DTM has 0.2 meter resolution. The steps of the geological and geomorphological analysis were: (1) visual interpretation based on field work and geological maps, (2) quantitative DTM analysis. In the quantitative analysis input data provided by the different kinds of DTMs were used for further parameter calculations (e.g. slope, aspect, sigmaZ). In the next step an automatic classification method was used for the detection of faults and classification of different parts of the landslide. The conclusion was that for geological visualization interpretation UAV datasets are better, because the high resolution texture information allows for the extraction of the digital geomorphology indicators. For quantitative analysis both datasets are informative, but the TLS DTM has an advantage of accessing additional information on faults beneath the vegetation cover. These studies were carried out partly in the framework of Hybrid 3D project financed by the Austrian Research Promotion Agency (FFG) and Von-Oben and 4D-IT; the contribution of ZsK was partly funded by Campus Hungary Internship TÁMOP-424B1; BSz contributed partly as an Alexander von Humboldt Research Fellow.
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A 3D Analysis of Rock Block Deformation and Failure Mechanics Using Terrestrial Laser Scanning
NASA Astrophysics Data System (ADS)
Rowe, Emily; Hutchinson, D. Jean; Kromer, Ryan A.; Edwards, Tom
2017-04-01
Many natural geological hazards are present along the Thompson River corridor in British Columbia, Canada, including one particularly hazardous rocky slope known as the White Canyon. Railway tracks used by Canadian National (CN) and Canadian Pacific (CP) Railway companies pass through this area at the base of the Canyon slope. The geologically complex and weathered rock face exposed at White Canyon is prone to rockfalls. With a limited ditch capacity, these falling rocks have the potential to land on the tracks and therefore increase the risk of train derailment. Since 2012, terrestrial laser scanning (TLS) data has been collected at this site on a regular basis to enable researchers at Queen's University to study these rockfalls in greater detail. In this paper, the authors present a summary of an analysis of these TLS datasets including an examination of the pre-failure deformation patterns exhibited by failed rock blocks as well as an investigation into the influence of structural constraints on the pre-failure behavior of these blocks. Aligning rockfall source zones in an early point cloud dataset to a later dataset generates a transformation matrix describing the movement of the block from one scan to the next. This process was repeated such that the motion of the block over the entire TLS data coverage period was measured. A 3D roto-translation algorithm was then used to resolve the motion into translation and rotation components (Oppikofer et al. 2009; Kromer et al. 2015). Structural information was plotted on a stereonet for further analysis. A total of 111 rockfall events exceeding a volume of 1 m3 were analyzed using this approach. The study reveals that although some rockfall source blocks blocks do not exhibit detectable levels of deformation prior to failure, others do experience cm-level translation and rotation on the order of 1 to 6 degrees before detaching from the slope. Moreover, these movements may, in some cases, be related to the discontinuity planes on the slope that were confining the block. It is concluded that rock blocks in White Canyon may be classified as one of five main failure mechanisms based on their pre-failure deformation and structure: planar slide, topple, rotation, wedge, and overhang, with overhang failures representing a large portion of rockfalls in this area. Overhang rockfalls in the White Canyon are characterized by blocks that (a) are not supported by an underlying discontinuity plane, and (b) generally do not exhibit pre-failure deformation. Though overhanging rock blocks are a structural subset of toppling failure, their behavior suggests a different mechanism of detachment. Future work will further populate the present database of rockfalls in White Canyon and will expand the study to include other sites along this corridor. The ultimate goal of this research is to establish warning thresholds based on deformation magnitudes for rockfalls in White Canyon to assist Canadian railways in better understanding and managing these slopes.
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[Tumour lysis syndrome in small-cell lung cancer].
Boshuizen, R C; Smit, A A J; Moons-Pasic, A; Bresser, P
2016-01-01
Small-cell lung cancer (SCLC) is a rapidly proliferating malignancy. Dramatic response to chemotherapy can therefore be expected. Unfortunately, tumour lysis prophylaxis is not mentioned in the current Dutch guidelines on SCLC treatment. A 64-year-old female was diagnosed with extensive SCLC and metastases. Shortly after diagnosis, chemotherapy was initiated. Based on Dutch guidelines, no tumour lysis prophylaxis was given. In addition to paraplegia, the patient also developed a clinical tumour lysis syndrome (TLS), and she passed away 5 days after start of treatment. Although tumour lysis prophylaxis is not mentioned in SCLC guidelines, tumour lysis in SCLC can occur as reported previously. Retrospectively, based on parameters applied to haematological malignancies, our patient was assessed as being at high risk of developing TLS.
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Security Proof for Password Authentication in TLS-Verifier-based Three-Party Group Diffie-Hellman
DOE Office of Scientific and Technical Information (OSTI.GOV)
Chevassut, Olivier; Milner, Joseph; Pointcheval, David
2008-04-21
The internet has grown greatly in the past decade, by some numbers exceeding 47 million active web sites and a total aggregate exceeding100 million web sites. What is common practice today on the Internet is that servers have public keys, but clients are largely authenticated via short passwords. Protecting these passwords by not storing them in the clear on institutions's servers has become a priority. This paper develops password-based ciphersuites for the Transport Layer Security (TLS) protocol that are: (1) resistant to server compromise; (2) provably secure; (3) believed to be free from patent and licensing restrictions based on anmore » analysis of relevant patents in the area.« less
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The Digital Von Fahrenheid Pyramid
NASA Astrophysics Data System (ADS)
Bura, M.; Janowski, J.; Wężyk, P.; Zięba, K.
2017-08-01
3D Scanners Lab from Digital Humanities Laboratory at the University of Warsaw initiated the scientific project, the purpose of which was to call attention to systematically penetrated and devastated pyramid-shaped tomb from the XVIII/XIX century, of family von Fahrenheid in Rapa in Banie Mazurskie commune (NE Poland). By conducting a series of non-invasive studies, such as 3D inventory using terrestrial laser scanning (TLS), thermal imaging, georadar measurements (around and inside the tomb) and anthropological research of mummified remains as well - the complete dataset was collected. Through the integration of terrestrial (TLS) and airborne laser scanning (ALS) authors managed to analyse the surroundings of Fahrenheid pyriamid and influence of some objects (like trees) on the condition and visibility of the Pyramids in the landscape.
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Hibbert, Richard G.; Sixma, Titia K.
2012-01-01
Ubiquitin conjugation provides a crucial signaling role in hundreds of cellular pathways; however, a structural understanding of ubiquitinated substrates is lacking. One important substrate is monoubiquitinated PCNA (PCNA-Ub), which signals for recruitment of damage-tolerant polymerases in the translesion synthesis (TLS) pathway of DNA damage avoidance. We use a novel and efficient enzymatic method to produce PCNA-Ub at high yield with a native isopeptide bond and study its Usp1/UAF1-dependent deconjugation. In solution we find that the ubiquitin moiety is flexible relative to the PCNA, with its hydrophobic patch mostly accessible for recruitment of TLS polymerases, which promotes the interaction with polymerase η. The studies are a prototype for the nature of the ubiquitin modification. PMID:22989887
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Zlinszky, András; Molnár, Bence; Barfod, Anders S.
2017-01-01
Circadian leaf movements are widely known in plants, but nocturnal movement of tree branches were only recently discovered by using terrestrial laser scanning (TLS), a high resolution three-dimensional surveying technique. TLS uses a pulsed laser emitted in a regular scan pattern for rapid measurement of distances to the targets, thus producing three dimensional point cloud models of sub-centimeter resolution and accuracy in a few minutes. Here, we aim to gain an overview of the variability of circadian movement of small trees across different taxonomic groups, growth forms and leaf anatomies. We surveyed a series of 18 full scans over a 12-h night period to measure nocturnal changes in shape simultaneously for an experimental setup of 22 plants representing different species. Resulting point clouds were evaluated by comparing changes in height percentiles of laser scanning points belonging to the canopy. Changes in crown shape were observed for all studied trees, but clearly distinguishable sleep movements are apparently rare. Ambient light conditions were continuously dark between sunset (7:30 p.m.) and sunrise (6:00 a.m.), but most changes in movement direction occurred during this period, thus most of the recorded changes in crown shape were probably not controlled by ambient light. The highest movement amplitudes, for periodic circadian movement around 2 cm were observed for Aesculus and Acer, compared to non-periodic continuous change in shape of 5 cm for Gleditschia and 2 cm for Fargesia. In several species we detected 2–4 h cycles of minor crown movement of 0.5–1 cm, which is close to the limit of our measurement accuracy. We present a conceptual framework for interpreting observed changes as a combination of circadian rhythm with a period close to 12 h, short-term oscillation repeated every 2–4 h, aperiodic continuous movement in one direction and measurement noise which we assume to be random. Observed movement patterns are interpreted within this framework, and connections with morphology and taxonomy are proposed. We confirm the existence of overnight “sleep” movement for some trees, but conclude that circadian movement is a variable phenomenon in plants, probably controlled by a complex combination of anatomical, physiological, and morphological factors. PMID:29104583
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NASA Astrophysics Data System (ADS)
Nield, J. M.; King, J.; Wiggs, G.
2012-12-01
The dust emissivity of salt pans (or playas) can be significant but is controlled by interactions between wind erosivity, surface moisture, salt chemistry and crust morphology. These surface properties influence the aeolian transport threshold and can be highly variable over both short temporal and spatial scales. In the past, field studies have been hampered by practical difficulties in accurately measuring properties controlling sediment availability at the surface in high resolution. Studies typically therefore, have investigated large scale monthly or seasonal change using remote sensing and assume a homogeneous surface when predicting dust emissivity. Here we present the first high resolution measurements (sub-cm) of salt crust expansion related to changes in diurnal moisture over daily and weekly time periods using terrestrial laser scanning (TLS, ground-based LiDAR) on Sua Pan, Botswana. The TLS measures both elevation and relative surface moisture change simultaneously, without disturbing the surface. Measurement sequences enable the variability in aeolian sediment availability to be quantified along with temporal feedbacks associated with crust degradation. On crusts with well-developed polygon ridges (high aerodynamic and surface roughness), daily surface expansion was greater than 30mm. The greatest surface change occurred overnight on the upper, exposed sections of the ridges, particularly when surface temperatures dropping below 10°C. These areas also experienced the greatest moisture variation and became increasingly moist overnight in response to an increase in relative humidity. In contrast, during daylight hours, the ridge areas were drier than the lower lying inter-ridge areas. Positive feedbacks between surface topography and moisture reinforced the maximum diurnal moisture variation at ridge peaks, encouraging crust thrusting due to overnight salt hydration, further enhancing the surface, and therefore, aerodynamic roughness. These feedbacks between surface roughness and moisture have implications for dust emissivity because crust expansion increases fluff production which is one of the main dust source materials. Further, increased roughness can locally increase wind erosivity and the potential evaporation of ridge areas. Crust thrusting also weakens the ridge peaks, developing cracked surfaces and exposing the sediment supply source below. These fast acting processes can have a major influence on wind erosion variability and dust emissivity from key dust source regions.; a-d) Elevation change overnight. e-f) Elevation change over 6 days.
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Urate oxidase for the prevention and treatment of tumour lysis syndrome in children with cancer.
Cheuk, Daniel Kl; Chiang, Alan Ks; Chan, Godfrey Cf; Ha, Shau Yin
2017-03-08
Tumour lysis syndrome (TLS) is a serious complication of malignancies and can result in renal failure or death. Previous reviews did not find clear evidence of benefit of urate oxidase in children with cancer. This review is the second update of a previously published Cochrane review. To assess the effects and safety of urate oxidase for the prevention and treatment of TLS in children with malignancies. In March 2016 we searched CENTRAL, MEDLINE, Embase, and CINAHL. In addition, we searched the reference lists of all identified relevant papers, trials registers and other databases. We also screened conference proceedings and we contacted experts in the field and the manufacturer of rasburicase, Sanofi-aventis. Randomised controlled trials (RCT) and controlled clinical trials (CCT) of urate oxidase for the prevention or treatment of TLS in children under 18 years with any malignancy. Two review authors independently extracted trial data and assessed individual trial quality. We used risk ratios (RR) for dichotomous data and mean difference (MD) for continuous data. We included seven trials, involving 471 participants in the treatment groups and 603 participants in the control groups. No new studies were identified in the update. One RCT and five CCTs compared urate oxidase and allopurinol. Three trials tested Uricozyme, and three trials tested rasburicase for the prevention of TLS.The RCT did not evaluate the primary outcome (incidence of clinical TLS). It showed no clear evidence of a difference in mortality (both all-cause mortality (Fisher's exact test P = 0.23) and mortality due to TLS (no deaths in either group)), renal failure (Fisher's exact test P = 0.46), and adverse effects between the treatment and the control groups (Fisher's exact test P = 1.0). The frequency of normalisation of uric acid at four hours (10 out of 10 participants in the treatment group versus zero out of nine participants in the control group, Fisher's exact test P < 0.001) and area under the curve of uric acid at four days (MD -201.00 mg/dLhr, 95% CI -258.05 mg/dLhr to -143.95 mg/dLhr; P < 0.00001) were significantly better in the treatment group.One CCT evaluated the primary outcome; no clear evidence of a difference was identified between the treatment and the control groups (RR 0.77, 95% CI 0.44 to 1.33; P = 0.34). Pooled results of three CCTs showed significantly lower mortality due to TLS in the treatment group (RR 0.05, 95% CI 0.00 to 0.89; P = 0.04); no clear evidence of a difference in all-cause mortality was identified between the groups (RR 0.19, 95% CI 0.01 to 3.42; P = 0.26). Pooled results from five CCTs showed significantly lower incidence of renal failure in the treatment group (RR 0.26, 95% CI 0.08 to 0.89; P = 0.03). Results of CCTs also showed significantly lower uric acid in the treatment group at two days (three CCTs: MD -3.80 mg/dL, 95% CI -7.37 mg/dL to -0.24 mg/dL; P = 0.04), three days (two CCTs: MD -3.13 mg/dL, 95% CI -6.12 mg/dL to -0.14 mg/dL; P = 0.04), four days (two CCTs: MD -4.60 mg/dL, 95% CI -6.39 mg/dL to -2.81 mg/dL; P < 0.00001), and seven days (one CCT: MD -1.74 mg/dL, 95% CI -3.01 mg/dL to -0.47 mg/dL; P = 0.007) after therapy, but not one day (three CCTs: MD -3.00 mg/dL, 95% CI -7.61 mg/dL to 1.60 mg/dL; P = 0.2), five days (one CCT: MD -1.02 mg/dL, 95% CI -2.24 mg/dL to 0.20 mg/dL; P = 0.1), and 12 days (one CCT: MD -0.80 mg/dL, 95% CI -2.51 mg/dL to 0.91 mg/dL; P = 0.36) after therapy. Pooled results from three CCTs showed higher frequency of adverse effects in participants who received urate oxidase (RR 9.10, 95% CI 1.29 to 64.00; P = 0.03).Another included RCT, with 30 participants, compared different doses of rasburicase (0.2 mg/kg versus 0.15 mg/kg). The primary outcome was not evaluated. No clear evidence of a difference in mortality (all-cause mortality (Fisher's exact test P = 1.0) and mortality due to TLS (no deaths in both groups)) and renal failure (no renal failure in both groups) was identified. It demonstrated no clear evidence of a difference in uric acid normalisation (RR 1.07, 95% CI 0.89 to 1.28; P = 0.49) and uric acid level at four hours (MD 8.10%, 95% CI -0.99% to 17.19%; P = 0.08). Common adverse events of urate oxidase included hypersensitivity, haemolysis, and anaemia, but no clear evidence of a difference between treatment groups was identified (RR 0.54, 95% CI 0.12 to 2.48; P = 0.42).The quality of evidence ranks from very low to low because of imprecise results, and all included trials were highly susceptible to biases. Although urate oxidase might be effective in reducing serum uric acid, it is unclear whether it reduces clinical TLS, renal failure, or mortality. Adverse effects might be more common for urate oxidase compared with allopurinol. Clinicians should weigh the potential benefits of reducing uric acid and uncertain benefits of preventing mortality or renal failure from TLS against the potential risk of adverse effects.
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Vallerga, María Belén; Mansilla, Sabrina F.; Federico, María Belén; Bertolin, Agustina P.; Gottifredi, Vanesa
2015-01-01
After UV irradiation, DNA polymerases specialized in translesion DNA synthesis (TLS) aid DNA replication. However, it is unclear whether other mechanisms also facilitate the elongation of UV-damaged DNA. We wondered if Rad51 recombinase (Rad51), a factor that escorts replication forks, aids replication across UV lesions. We found that depletion of Rad51 impairs S-phase progression and increases cell death after UV irradiation. Interestingly, Rad51 and the TLS polymerase polη modulate the elongation of nascent DNA in different ways, suggesting that DNA elongation after UV irradiation does not exclusively rely on TLS events. In particular, Rad51 protects the DNA synthesized immediately before UV irradiation from degradation and avoids excessive elongation of nascent DNA after UV irradiation. In Rad51-depleted samples, the degradation of DNA was limited to the first minutes after UV irradiation and required the exonuclease activity of the double strand break repair nuclease (Mre11). The persistent dysregulation of nascent DNA elongation after Rad51 knockdown required Mre11, but not its exonuclease activity, and PrimPol, a DNA polymerase with primase activity. By showing a crucial contribution of Rad51 to the synthesis of nascent DNA, our results reveal an unanticipated complexity in the regulation of DNA elongation across UV-damaged templates. PMID:26627254
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Sullivan, T.J.; Cosby, B.J.; Driscoll, C.T.; McDonnell, T.C.; Herlihy, A.T.; Burns, Douglas A.
2012-01-01
The dynamic watershed acid-base chemistry model of acidification of groundwater in catchments (MAGIC) was used to calculate target loads (TLs) of atmospheric sulfur and nitrogen deposition expected to be protective of aquatic health in lakes in the Adirondack ecoregion of New York. The TLs were calculated for two future dates (2050 and 2100) and three levels of protection against lake acidification (acid neutralizing capacity (ANC) of 0, 20, and 50 eq L -1). Regional sulfur and nitrogen deposition estimates were combined with TLs to calculate exceedances. Target load results, and associated exceedances, were extrapolated to the regional population of Adirondack lakes. About 30% of Adirondack lakes had simulated TL of sulfur deposition less than 50 meq m -2 yr to protect lake ANC to 50 eq L -1. About 600 Adirondack lakes receive ambient sulfur deposition that is above this TL, in some cases by more than a factor of 2. Some critical criteria threshold values were simulated to be unobtainable in some lakes even if sulfur deposition was to be decreased to zero and held at zero until the specified endpoint year. We also summarize important lessons for the use of target loads in the management of acid-impacted aquatic ecosystems, such as those in North America, Europe, and Asia. Copyright 2012 by the American Geophysical Union.
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Data-dependence Profiling to Enable Safe Thread Level Speculation
DOE Office of Scientific and Technical Information (OSTI.GOV)
Bhattacharyya, Arnamoy; Amaral, José Nelson; Finkel, Hal
Data-dependence profling is a technique that enables a com- piler to judiciously decide when the execution of a loop | which the compiler could not prove to be dependence free | should be speculated through the use of Thread Level Spec- ulation (TLS). The data collected by a data-dependence pro- fler can be used to predict if may dependencies reported by a compiler static analysis are likely to materialize at runtime. A cost analysis can then be used to decide that some loops with a lower probability of dependence should be specula- tively parallelized. This paper addresses the question asmore » to whether a loops' dependence behaviour changes when the in- put to the program changes | a study of 57 different bench- marks indicates that it usually does not change. Then the paper describes SpecEval, an automatic speculative paral- lelization framework that uses single-input data-dependence profles to find speculation candidates in the SPEC2006 and PolyBench/C benchmarks. This paper also presents a per- formance evaluation of TLS implementation in IBM's Blue- Gene/Q supercomputer and shows that the performance of TLS is affected by several factors, including the number of speculated loops, the execution-time coverage of speculated loops, the miss-speculation overhead, the L1 cache miss rate and the effect on dynamic instruction path length.« less
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Muralikrishnan, Bala; Rachakonda, Prem; Lee, Vincent; Shilling, Meghan; Sawyer, Daniel; Cheok, Geraldine; Cournoyer, Luc
2017-12-01
Terrestrial laser scanners (TLS) are a class of 3D imaging systems that produce a 3D point cloud by measuring the range and two angles to a point. The fundamental measurement of a TLS is range. Relative range error is one component of the overall range error of TLS and its estimation is therefore an important aspect in establishing metrological traceability of measurements performed using these systems. Target geometry is an important aspect to consider when realizing the relative range tests. The recently published ASTM E2938-15 mandates the use of a plate target for the relative range tests. While a plate target may reasonably be expected to produce distortion free data even at far distances, the target itself needs careful alignment at each of the relative range test positions. In this paper, we discuss relative range experiments performed using a plate target and then address the advantages and limitations of using a sphere target. We then present a novel dual-sphere-plate target that draws from the advantages of the sphere and the plate without the associated limitations. The spheres in the dual-sphere-plate target are used simply as fiducials to identify a point on the surface of the plate that is common to both the scanner and the reference instrument, thus overcoming the need to carefully align the target.
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Baldeck, Nadège; Janel-Bintz, Régine; Wagner, Jérome; Tissier, Agnès; Fuchs, Robert P.; Burkovics, Peter; Haracska, Lajos; Despras, Emmanuelle; Bichara, Marc; Chatton, Bruno; Cordonnier, Agnès M.
2015-01-01
Switching between replicative and translesion synthesis (TLS) DNA polymerases are crucial events for the completion of genomic DNA synthesis when the replication machinery encounters lesions in the DNA template. In eukaryotes, the translesional DNA polymerase η (Polη) plays a central role for accurate bypass of cyclobutane pyrimidine dimers, the predominant DNA lesions induced by ultraviolet irradiation. Polη deficiency is responsible for a variant form of the Xeroderma pigmentosum (XPV) syndrome, characterized by a predisposition to skin cancer. Here, we show that the FF483–484 amino acids in the human Polη (designated F1 motif) are necessary for the interaction of this TLS polymerase with POLD2, the B subunit of the replicative DNA polymerase δ, both in vitro and in vivo. Mutating this motif impairs Polη function in the bypass of both an N-2-acetylaminofluorene adduct and a TT-CPD lesion in cellular extracts. By complementing XPV cells with different forms of Polη, we show that the F1 motif contributes to the progression of DNA synthesis and to the cell survival after UV irradiation. We propose that the integrity of the F1 motif of Polη, necessary for the Polη/POLD2 interaction, is required for the establishment of an efficient TLS complex. PMID:25662213
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Drone based structural mapping at Holuhraun indicates fault reactivation and complexity
NASA Astrophysics Data System (ADS)
Mueller, Daniel; Walter, Thomas R.; Steinke, Bastian; Witt, Tanja; Schoepa, Anne; Duerig, Tobi; Gudmundsson, Magnus T.
2016-04-01
Accompanied by an intense seismic swarm in August 2014, a dike laterally formed, starting under Icelands Vatnajökull glacier, propagating over a distance of more than 45 km within only two weeks, leading to the largest eruption by volume since the 1783-84 Laki eruption. Along its propagation path, the dike caused intense surface displacements up to meters. Based on seismicity, GPS and InSAR, the propagation has already been analysed and described as segmented lateral dike growth. We now focus on few smaller regions of the dike. We consider the Terrasar-X tandem digital elevation map and aerial photos and find localized zones where structural fissures formed and curved. At these localized, regions we performed a field campaign in summer 2015, applying the close range remote sensing techniques Structure from Motion (SfM) and Terrestrial Laser Scanning (TLS). Over 4 TLS scan were collected, along with over 5,000 aerial images. Point clouds from SfM and TLS are merged and compared, and local structural lineaments analysed. As a result, we obtained an unprecedentedly high-resolution digital elevation map. With this map, we analyse the structural expression of the fissure eruption at the surface and improve understanding on the conditions that influenced the magma propagation path. We elaborate scenarios that lead to complexities of the surface structures and the link to the underlying dike intrusion.
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NASA Astrophysics Data System (ADS)
Fugazza, Davide; Scaioni, Marco; Corti, Manuel; D'Agata, Carlo; Azzoni, Roberto Sergio; Cernuschi, Massimo; Smiraglia, Claudio; Diolaiuti, Guglielmina Adele
2018-04-01
Tourists and hikers visiting glaciers all year round face hazards such as sudden terminus collapses, typical of such a dynamically evolving environment. In this study, we analyzed the potential of different survey techniques to analyze hazards of the Forni Glacier, an important geosite located in Stelvio Park (Italian Alps). We carried out surveys in the 2016 ablation season and compared point clouds generated from an unmanned aerial vehicle (UAV) survey, close-range photogrammetry and terrestrial laser scanning (TLS). To investigate the evolution of glacier hazards and evaluate the glacier thinning rate, we also used UAV data collected in 2014 and a digital elevation model (DEM) created from an aerial photogrammetric survey of 2007. We found that the integration between terrestrial and UAV photogrammetry is ideal for mapping hazards related to the glacier collapse, while TLS is affected by occlusions and is logistically complex in glacial terrain. Photogrammetric techniques can therefore replace TLS for glacier studies and UAV-based DEMs hold potential for becoming a standard tool in the investigation of glacier thickness changes. Based on our data sets, an increase in the size of collapses was found over the study period, and the glacier thinning rates went from 4.55 ± 0.24 m a-1 between 2007 and 2014 to 5.20 ± 1.11 m a-1 between 2014 and 2016.
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SEMICIRCULAR-LIKE SECONDARY FLARE RIBBONS ASSOCIATED WITH A FAILED ERUPTION
DOE Office of Scientific and Technical Information (OSTI.GOV)
Zheng, R.; Korsós, M. B.; Erdélyi, R., E-mail: r.zheng@sheffield.ac.uk, E-mail: robertus@sheffield.ac.uk
Flare ribbons (FRs) are one of the most apparent signatures of solar flares and have been treated as an indicator of magnetic reconnection. Drawing upon the observations from the Solar Dynamics Observatory, we present semicircular-like secondary FRs (SFRs) of a C2.3 flare on 2013 June 19. Before the flare eruption, two bipoles in this core region subsequently emerged. Due to the interaction between the two bipoles, a tether-cutting eruption took place in the core region. The SFRs, surrounding the core region nearly simultaneously with the flare onset, were much weaker than the two normal FRs. Two ends of the SFRsmore » experienced a separation and extension movement, but the middle part of the SFRs hardly expanded outward. We find SFRs are closely associated with the footpoint brightenings of some small loops around the core region. The eruption was confined by transequatorial loops (TLs), which resulted in the plasma material falling in the north end of the TLs and remote brightenings showing up in the south end of the TLs. The disappearance of the faint (filament) material during the emergence of the SFRs could indicate another eruption. We conclude that two or more magnetic reconnections are involved in this event and propose that SFRs consisting of a small part of true FRs resulted from the second magnetic reconnection and bright footpoints of loop clusters likely heated by the main flare.« less
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An Efficient, Hierarchical Viewpoint Planning Strategy for Terrestrial Laser Scanner Networks
NASA Astrophysics Data System (ADS)
Jia, F.; Lichti, D. D.
2018-05-01
Terrestrial laser scanner (TLS) techniques have been widely adopted in a variety of applications. However, unlike in geodesy or photogrammetry, insufficient attention has been paid to the optimal TLS network design. It is valuable to develop a complete design system that can automatically provide an optimal plan, especially for high-accuracy, large-volume scanning networks. To achieve this goal, one should look at the "optimality" of the solution as well as the computational complexity in reaching it. In this paper, a hierarchical TLS viewpoint planning strategy is developed to solve the optimal scanner placement problems. If one targeted object to be scanned is simplified as discretized wall segments, any possible viewpoint can be evaluated by a score table representing its visible segments under certain scanning geometry constraints. Thus, the design goal is to find a minimum number of viewpoints that achieves complete coverage of all wall segments. The efficiency is improved by densifying viewpoints hierarchically, instead of a "brute force" search within the entire workspace. The experiment environments in this paper were simulated from two buildings located on University of Calgary campus. Compared with the "brute force" strategy in terms of the quality of the solutions and the runtime, it is shown that the proposed strategy can provide a scanning network with a compatible quality but with more than a 70 % time saving.
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NASA Astrophysics Data System (ADS)
Gumilar, Irwan; Fattah, Alif; Abidin, Hasanuddin Z.; Sadarviana, Vera; Putri, Nabila S. E.; Kristianto
2017-07-01
West Java is one of the provinces in Indonesia which is prone to landslide. Over the past few years, landslides in this area have resulted in a large number of victims. One of the areas in West Java with the highest risk of landslide occurrence is Rancabali Ciwidey. In general, the morphology around the landslide location is steep hills, with the slope > 30° and the altitude between 1550 - 1865 m above sea level. Several indications of ground movements can be seen in the form of slumps and cracks on the village roads and tea plantation, as well as slanting trees and electricity poles. The ground movement monitoring in this area is necessary for disaster mitigation. Several methods that can be used to monitor the landslide are using Terrestrial Laser Scanner (TLS) and robotic total station. This research aims is monitoring the landslide using these methods. The methodology used in this research is by obtaining the scanning data using TLS C-10 and Robotic total station MS05 measurements to obtain the coordinates of monitoring point clouds and prism. The TLS software that we used are Cyclone 8.1 and Maptek I-Site. For robotic total station, the software that we used is MSP software. These method hopefully can be used for early warning system of landslide in Rancabali area.
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Crystal Lattice Controlled SiGe Thermoelectric Materials with High Figure of Merit
NASA Technical Reports Server (NTRS)
Kim, Hyun-Jung; Park, Yeonjoon; King, Glen C.; Lee, Kunik; Choi, Sang H.
2010-01-01
Direct energy conversion between thermal and electrical energy, based on thermoelectric (TE) effect, has the potential to recover waste heat and convert it to provide clean electric power. The energy conversion efficiency is related to the thermoelectric figure of merit ZT expressed as ZT=S(exp 2)(sigma)T/Kappa, T is temperature, S is the Seebeck coefficient, sigma is conductance and Kappa is thermal conductivity. For a lower thermal conductivity Kappa and high power factor (S(exp 2)(sigma)), our current strategy is the development of rhombohedrally strained single crystalline SiGe materials that are highly [111]-oriented twinned. The development of a SiGe "twin lattice structure (TLS)" plays a key role in phonon scattering. The TLS increases the electrical conductivity and decreases thermal conductivity due to phonon scattering at stacking faults generated from the 60 X rotated primary twin structure. To develop high performance materials, the substrate temperature, chamber working pressure, and DC sputtering power are controlled for the aligned growth production of SiGe layer and TLS on a c-plane sapphire. Additionally, a new elevated temperature thermoelectric characterization system, that measures the thermal diffusivity and Seebeck effect nondestructively, was developed. The material properties were characterized at various temperatures and optimized process conditions were experimentally determined. The present paper encompasses the technical discussions toward the development of thermoelectric materials and the measurement techniques.
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Auerbach, Paul A.; Demple, Bruce
2010-01-01
Translesion synthesis (TLS) on DNA is a process by which potentially cytotoxic replication-blocking lesions are bypassed, but at the risk of increased mutagenesis. The exact in vivo role of the individual TLS enzymes in Saccharomyces cerevisiae has been difficult to determine from previous studies due to differing results from the variety of systems used. We have generated a series of S.cerevisiae strains in which each of the TLS-related genes REV1, REV3, REV7, RAD30 and POL32 was deleted, and in which chromosomal apyrimidinic sites were generated during normal cell growth by the activity of altered forms of human uracil-DNA glycosylase that remove undamaged cytosines or thymines. Deletion of REV1, REV3 or REV7 resulted in slower growth dependent on (rev3Δ and rev7Δ) or enhanced by (rev1Δ) expression of the mutator glycosylases and a nearly complete abolition of glycosylase-induced mutagenesis. Deletion of POL32 resulted in cell death when the mutator glycosylases were expressed and, in their absence, diminished spontaneous mutagenesis. RAD30 appeared to be unnecessary for mutagenesis in response to abasic sites, as deleting this gene caused no significant change in either the mutation rates or the mutational spectra due to glycosylase expression. PMID:19901007
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A Stochastic Total Least Squares Solution of Adaptive Filtering Problem
Ahmad, Noor Atinah
2014-01-01
An efficient and computationally linear algorithm is derived for total least squares solution of adaptive filtering problem, when both input and output signals are contaminated by noise. The proposed total least mean squares (TLMS) algorithm is designed by recursively computing an optimal solution of adaptive TLS problem by minimizing instantaneous value of weighted cost function. Convergence analysis of the algorithm is given to show the global convergence of the proposed algorithm, provided that the stepsize parameter is appropriately chosen. The TLMS algorithm is computationally simpler than the other TLS algorithms and demonstrates a better performance as compared with the least mean square (LMS) and normalized least mean square (NLMS) algorithms. It provides minimum mean square deviation by exhibiting better convergence in misalignment for unknown system identification under noisy inputs. PMID:24688412
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Fang, Chin; Corttrell, R. A.
This Technical Note provides an overview of high-performance parallel Big Data transfers with and without encryption for data in-transit over multiple network channels. It shows that with the parallel approach, it is feasible to carry out high-performance parallel "encrypted" Big Data transfers without serious impact to throughput. But other impacts, e.g. the energy-consumption part should be investigated. It also explains our rationales of using a statistics-based approach for gaining understanding from test results and for improving the system. The presentation is of high-level nature. Nevertheless, at the end we will pose some questions and identify potentially fruitful directions for futuremore » work.« less
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Detection of precursory deformation using a TLS. Application to spatial prediction of rockfalls.
NASA Astrophysics Data System (ADS)
Abellán, Antonio; Vilaplana, Joan Manuel; Calvet, Jaume; Rodriguez, Xavier
2010-05-01
Different applications on the use of Terrestrial Laser Scanner (TLS) on rock slopes are undergoing rapid development, mainly in the characterization of 3D discontinuities and the monitoring of rock slopes. The emphasis of this research is on detection of precursory deformation and its application to spatial prediction of rockfalls. The pilot study area corresponds to the main scarp of an old slide located at Puigcercós (Catalonia, Spain). 3D temporal variations of the terrain were analyzed by comparing sequential TLS datasets. Five areas characterized by centimetric precursory deformations were detected in the study area. Of these deformations, (a) growing deformation across three areas culminated in a rockfall occurrence; and (b) another growing deformation across two areas was detected, making a subsequent rockfall likely. The areas with precursory deformations detected in Puigcercós showed the following characteristics: (a) a sub-vertical fracture delimiting the moving part from the rest of the slope; (b) an increase in the horizontal displacement upwards, typical of a toppling failure mechanism (Muller 1968; Goodman and Bray, 1976). In addition, decimetric-scale rockfalls were observed in the upper part of the moving areas, which is consistent with the observations of Rosser et al., (2007). TLS ILRIS 3D technical characteristics are as follows: high accuracy (7.2 mm at a range of 50 meters), high angular resolution (e.g. 1 point every few cm), fast data acquisition: 2,500 points/second; broad coverage; high maximum range on natural slopes: ~600m. The single point distances between the surface of reference and the successive data point clouds were computed using a conventional methodology (data vs. reference comparison). The direction of comparison was defined as the normal vector of the rock face at its central part. We focused in the study of the small scale displacements towards the origin of coordinates, which reflect the pre-failure deformation on part of the slope. A nearest neighbour (NN) filtering technique was applied to the RAW datasets (Abellán et al., 2009), enabling the accurate detection of centimetric displacements. The parameters of the precursory deformation correlated with the failure mechanism, lithology and volume of the rockfall: higher values of length and duration of the precursory deformation were found in the toppling failure mechanism, ductile materials and rockfalls that involved considerable volumes. These results are consistent with observations in the literature regarding rockfalls of higher magnitude and lower frequency (e.g.: Zvelebil and Moser, 2001; Crosta and Agliardi, 2004; Hungr et al., 2007). It is also important to mention that no precursory indicators were detected prior to each rockfall that occurred in the study areas. This could simply be due to infrequent data acquisition or insufficient instrument accuracy. The application of TLS for the spatial prediction of rockfalls should be validated through: (a) the continuation of the TLS monitoring campaign at the areas which currently show ongoing deformation; (b) the selection of new case studies at different geomorphological sites with different lithologies; and (c) the selection of new case studies with different failure mechanisms (e.g. fall, slide). These tasks are of paramount importance to understand the pre-failure behaviour of rockfalls and to implement these findings in an early warning system.
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NASA Astrophysics Data System (ADS)
Bremer, Magnus; Sass, Oliver; Vetter, Michael; Geilhausen, Martin
2010-05-01
Country-wide ALS datasets of high resolution become more and more available and can provide a solid basis for geomorphological research. On the other hand, terrain changes after geomorphological extreme events can be quickly and flexibly documented by TLS and be compared to the pre-existing ALS datasets. For quantifying net-erosion, net-sedimentation and transport rates of events like rock falls, landslides and debris flows, comparing TLS surveys after the event to ALS data before the event is likely to become a widespread and powerful tool. However, the accuracy and possible errors of fitting ALS and TLS data have to be carefully assessed. We tried to quantify sediment movement and terrain changes caused by a major debris-flow-event in the Halltal in the Karwendel Mountains (Tyrol, Austria). Wide areas of limestone debris were dissected and relocated in the course of an exceptional rainstorm event on 29th June 2008. The event occurred 64 years after wildfire-driven deforestation. In the area, dense dwarf pine (pinus mugo) shrub cover is widespread, causing specific problems in generating terrain models. We compared a pre-event ALS-dataset, provided by the federal-state of Tyrol, and a post-event TLS survey. The two scanner systems have differing system characteristics (scan angles, resolutions, application of dGPS, etc.), causing different systematic and random errors. Combining TLS and ALS point data was achieved using an algorithm of the RISCAN_PRO software (Multi Station Adjustment), enabling a least square fitting between the two surfaces. Adjustment and registration accuracies as well as the quality of applied vegetation filters, mainly eliminating non-groundpoints from the raw data, are crucial for the generation of high-quality terrain models and a reliable comparison of the two data sets. Readily available filter algorithms provide good performance for gently sloped terrain and high forest vegetation. However, the low krummholz vegetation on steep terrain proved difficult to be filtered. This is due to a small height difference between terrain and canopy, a very strong height variation of the terrain points compared to the height variation of the canopy points and a very high density of the vegetation. The letter leads to very low percentages of groundpoints (1 - 5%). A combined filtering approach using a surface-based filter and a morphological filter, adapted to the characteristics of the krummholz vegetation were applied to overcome these problems. In the next step, the datasets were compared, erosion- and sedimentation areas were detected and quantified (cut-and-fill) in view of the accuracy achieved. The position of the relocated surface areas were compared to the morphological structures of the initial surface (inclination, curvature, flowpaths, hydrological catchments). Considerable deviations between the datasets were caused, besides the geomorphic terrain changes, by systematic and random errors. Due to the scanner perspective, parts of the steep slopes are depicted inaccurately by ALS. Rugged terrain surfaces cause random errors of ALS/TLS adjustment when the ratio of point density to surface variability is low. Due to multiple returns and alteration of pulse shape, terrain altitude is frequently overestimated when dense shrub cover is present. This effect becomes stronger with larger footprints. Despite these problems, erosional and depositional areas of debris flows could be clearly identified and match the results of field surveys. Strongest erosion occurred along the flowpaths with the greatest runoff concentration, mainly at the bedrock-debris interface.
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LIDAR data to support coastal erosion analysis: the Conero study case
NASA Astrophysics Data System (ADS)
Calligaro, Simone; Sofia, Giulia; Guarnieri, Alberto; Tarolli, Paolo
2013-04-01
In the last decades, the topic of coastal erosion and the derived risk have been subject of a growing interest for public authorities and researchers. Recent major natural events, such as hurricanes, tsunamis, and sea level rising, called the attention of media and society, underlining serious concerns about such problems. In a high-density populated country such as Italy, where tourism is one of the major economic activities, the coastal erosion is really a critical issue. In April 2010, along a reach of the coast of Ventotene Island, two young students tragically died, killed by a rock fall. This event dramatically stressed public authorities about the effectiveness of structural and non-structural measures for the mitigation of such phenomena. It is clear that an improving of the actual knowledge about coastal erosion is needed, especially to monitor such events and to set alert systems. In the last few years, airborne LIDAR technology led to a dramatic increase in terrain information. Airborne LiDAR and Terrestrial Laser Scanner (TLS) derived high-resolution Digital Terrain Models (DTMs) have opened avenues for hydrologic and geomorphologic studies (Tarolli et al., 2009). In general, all the main surface processes signatures are correctly recognized using a DTM with cell sizes of 1 m. Having said that, some sub-meter grid sizes may be more suitable in those situations where the analysis of micro topography related to micro changes due to slope failures is critical for risk assessment, and the Terrestrial Laser Scanner (TLS) has been proven to be a useful tool for such detailed field survey. The acquired elevation data with TLS allow to derive a centimeters high quality DTMs. The possibility to detect in detail the slope failures signatures results in a better understanding and mapping of the erosion susceptibility, and of those areas where slope failures are more likely to happen. In addition, these information can be also considered as the basis to develop risk maps. At this regard, a clear example is the case of coastal erosion. In this work a detailed TLS survey was carried out in summer 2012, in the Conero Regional Park (Marche, province of Ancona), along the "spiaggia Urbani" and "spiaggia San Michele". These two study areas present several sections affected by erosion, rock falls and slope failures. They are also a part of a very prestigious place for tourism during the summer season; therefore deriving risk maps is critical. Thanks to the TLS survey, it was possible to obtain a 10 cm resolution DTM covering a reach of about 1.5 km of the coast. This high resolution DTM was used to derive topographic attributes such as curvature from which it has been possible to automatically recognize (Tarolli et al, 2012) and map the surface features related to any surface instabilities. These topographic information and results will also serve as the reference point for future yearly TLS surveys, that absolutely will help in recognizing any micro changes and slope failures, improving the delineation of risk maps. References Tarolli, P., Arrowsmith, J.R., Vivoni, E.R. (2009). Understanding earth surface processes from remotely sensed digital terrain models, Geomorphology, 113, 1-3, doi:10.1016/j.geomorph. 2009.07.005. Tarolli, P., Sofia, G., Dalla Fontana, G. (2012). Geomorphic features extraction from high-resolution topography: landslide crowns and bank erosion, Natural Hazards, 61, 65-83, doi:10.1007/s11069-010-9695-2.
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NASA Astrophysics Data System (ADS)
Ratajczak, M.; Wężyk, P.
2015-12-01
Rapid development of terrestrial laser scanning (TLS) in recent years resulted in its recognition and implementation in many industries, including forestry and nature conservation. The use of the 3D TLS point clouds in the process of inventory of trees and stands, as well as in the determination of their biometric features (trunk diameter, tree height, crown base, number of trunk shapes), trees and lumber size (volume of trees) is slowly becoming a practice. In addition to the measurement precision, the primary added value of TLS is the ability to automate the processing of the clouds of points 3D in the direction of the extraction of selected features of trees and stands. The paper presents the original software (GNOM) for the automatic measurement of selected features of trees, based on the cloud of points obtained by the ground laser scanner FARO. With the developed algorithms (GNOM), the location of tree trunks on the circular research surface was specified and the measurement was performed; the measurement covered the DBH (l: 1.3m), further diameters of tree trunks at different heights of the tree trunk, base of the tree crown and volume of the tree trunk (the selection measurement method), as well as the tree crown. Research works were performed in the territory of the Niepolomice Forest in an unmixed pine stand (Pinussylvestris L.) on the circular surface with a radius of 18 m, within which there were 16 pine trees (14 of them were cut down). It was characterized by a two-storey and even-aged construction (147 years old) and was devoid of undergrowth. Ground scanning was performed just before harvesting. The DBH of 16 pine trees was specified in a fully automatic way, using the algorithm GNOM with an accuracy of +2.1%, as compared to the reference measurement by the DBH measurement device. The medium, absolute measurement error in the cloud of points - using semi-automatic methods "PIXEL" (between points) and PIPE (fitting the cylinder) in the FARO Scene 5.x., showed the error, 3.5% and 5.0%,.respectively The reference height was assumed as the measurement performed by the tape on the cut tree. The average error of automatic determination of the tree height by the algorithm GNOM based on the TLS point clouds amounted to 6.3% and was slightly higher than when using the manual method of measurements on profiles in the TerraScan (Terrasolid; the error of 5.6%). The relatively high value of the error may be mainly related to the small number of points TLS in the upper parts of crowns. The crown height measurement showed the error of +9.5%. The reference in this case was the tape measurement performed already on the trunks of cut pine trees. Processing the clouds of points by the algorithms GNOM for 16 analyzed trees took no longer than 10 min. (37 sec. /tree). The paper mainly showed the TLS measurement innovation and its high precision in acquiring biometric data in forestry, and at the same time also the further need to increase the degree of automation of processing the clouds of points 3D from terrestrial laser scanning.
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Near-field Oblique Remote Sensing of Stream Water-surface Elevation, Slope, and Surface Velocity
NASA Astrophysics Data System (ADS)
Minear, J. T.; Kinzel, P. J.; Nelson, J. M.; McDonald, R.; Wright, S. A.
2014-12-01
A major challenge for estimating discharges during flood events or in steep channels is the difficulty and hazard inherent in obtaining in-stream measurements. One possible solution is to use near-field remote sensing to obtain simultaneous water-surface elevations, slope, and surface velocities. In this test case, we utilized Terrestrial Laser Scanning (TLS) to remotely measure water-surface elevations and slope in combination with surface velocities estimated from particle image velocimetry (PIV) obtained by video-camera and/or infrared camera. We tested this method at several sites in New Mexico and Colorado using independent validation data consisting of in-channel measurements from survey-grade GPS and Acoustic Doppler Current Profiler (ADCP) instruments. Preliminary results indicate that for relatively turbid or steep streams, TLS collects tens of thousands of water-surface elevations and slopes in minutes, much faster than conventional means and at relatively high precision, at least as good as continuous survey-grade GPS measurements. Estimated surface velocities from this technique are within 15% of measured velocity magnitudes and within 10 degrees from the measured velocity direction (using extrapolation from the shallowest bin of the ADCP measurements). Accurately aligning the PIV results into Cartesian coordinates appears to be one of the main sources of error, primarily due to the sensitivity at these shallow oblique look angles and the low numbers of stationary objects for rectification. Combining remotely-sensed water-surface elevations, slope, and surface velocities produces simultaneous velocity measurements from a large number of locations in the channel and is more spatially extensive than traditional velocity measurements. These factors make this technique useful for improving estimates of flow measurements during flood flows and in steep channels while also decreasing the difficulty and hazard associated with making measurements in these conditions.
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NASA Astrophysics Data System (ADS)
Loye, Alexandre; Jaboyedoff, Michel; Theule, Joshua Isaac; Liébault, Frédéric
2016-06-01
Debris flows have been recognized to be linked to the amounts of material temporarily stored in torrent channels. Hence, sediment supply and storage changes from low-order channels of the Manival catchment, a small tributary valley with an active torrent system located exclusively in sedimentary rocks of the Chartreuse Massif (French Alps), were surveyed periodically for 16 months using terrestrial laser scanning (TLS) to study the coupling between sediment dynamics and torrent responses in terms of debris flow events, which occurred twice during the monitoring period. Sediment transfer in the main torrent was monitored with cross-section surveys. Sediment budgets were generated seasonally using sequential TLS data differencing and morphological extrapolations. Debris production depends strongly on rockfall occurring during the winter-early spring season, following a power law distribution for volumes of rockfall events above 0.1 m3, while hillslope sediment reworking dominates debris recharge in spring and autumn, which shows effective hillslope-channel coupling. The occurrence of both debris flow events that occurred during the monitoring was linked to recharge from previous debris pulses coming from the hillside and from bedload transfer. Headwater debris sources display an ambiguous behaviour in sediment transfer: low geomorphic activity occurred in the production zone, despite rainstorms inducing debris flows in the torrent; still, a general reactivation of sediment transport in headwater channels was observed in autumn without new debris supply, suggesting that the stored debris was not exhausted. The seasonal cycle of sediment yield seems to depend not only on debris supply and runoff (flow capacity) but also on geomorphic conditions that destabilize remnant debris stocks. This study shows that monitoring the changes within a torrent's in-channel storage and its debris supply can improve knowledge on recharge thresholds leading to debris flow.
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Thermal monitoring of a granitic exfoliation sheet and cliff in Yosemite Valley, California (USA)
NASA Astrophysics Data System (ADS)
Guerin, Antoine; Matasci, Battista; Collins, Brian D.; Stock, Greg M.; Derron, Marc-Henri; Jaboyedoff, Michel
2015-04-01
In recent years, new remote sensing techniques such as Terrestrial Laser Scanner (TLS) and Infrared Thermography (IRT) have been used in parallel for rock weathering and weakness detection in slope stability analysis. Nevertheless, the effects of thermal stresses on rock face deformation are still poorly quantified, especially for steep and inaccessible cliffs. To better understand how daily temperature fluctuations influence the behavior of exfoliation joints (i.e., fractures separating exfoliation sheets), we monitored a granitic exfoliation sheet in detail using TLS and IRT over a several day period and also compiled a single TLS-IRT thermal panorama of a larger nearby granitic cliff composed of hundreds to thousands of similar exfoliation sheets. The exfoliation sheet had been previously instrumented for 3.5 years beginning in May 2010 using crackmeters and temperature sensors (Collins and Stock, 2010 and 2012), thereby providing an important baseline to compare our IRT measurements. For several consecutive days, a series of infrared thermal images (collected every 20 min.) of the exfoliation flake (19 m by 4 m by 0.1 m) was taken with a long range IRISYS IRI 4040 thermal imager, as well as several ground-based LiDAR scans, collected at 4 mm point spacing. These pictures were draped on the TLS triangular meshes to quantify the lateral propagation of temperature during the warming and cooling periods. The evolution of vertical and horizontal temperature profiles was also investigated. Results show that the sheet edge undergoes the most significant temperature changes and that warming takes place from the inside part to the border of the flake; conversely cooling takes place from the outside-inwards. Furthermore, the comparison of point clouds indicates a maximum crack aperture of over 1 cm occurring in the afternoon (12:00 to 15:00), when temperatures are at their maximum. The thermal panoramic image of the cliff (600 m wide by 300 m tall) was created using over 100 stitched pictures and also draped on a TLS mesh to generate a 3D color model. This model shows the apparent temperatures measured according to position and surface orientation of the cliff. This rock wall has many recent rockfall scars with lighter colored rock surface; these scars appear as spots of lower temperature surrounded by warmer areas and may undergo increased stress related to the thermal variations. However, these first results must be verified by further testing using calibrated models to distinguish the effects of emissivity and thermal radiation. Subsequently, we plan to fix the thermal camera on a GigaPan EPIC Pro device to take sequences of panoramas during rock cooling and heating and to perform additional investigation on air and water propagation in fractured zones.
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Coastal Applications of the Canopy Biomass Lidar (CBL)
NASA Astrophysics Data System (ADS)
Paynter, I.; Saenz, E.; Peri, F.; Schaaf, C.; Wang, Z.; Erb, A.; Yang, Y.; Rouhani, S.; Liu, Y.; Yang, X.; Chen, R. F.; Oktay, S.; Gontz, A. M.; Douglas, E. M.; Kim, J.; Sun, Q.; Strahler, A. H.; Li, Z.; van Aardt, J. A.; Kelbe, D.; Romanczyk, P.; Cawse-Nicholson, K.
2013-12-01
Airborne discrete and full waveform lidars have increasingly been utilized to augment multispectral and hyperspectral imaging of coastal ecosystems. While these data provide important landscape assessments of the shore and nearshore environment, they often lack the frequency that is really needed to monitor complex vegetative systems such as salt marshes and mangroves and provide rapid evaluations in the aftermath of severe storms. One solution is to augment the sparse airborne and satellite acquisitions with terrestrial laser scanning (TLS) information. However, most institutions with fine resolution discrete or full waveform TLS instruments are unwilling to risk these expensive (and often heavy) lidar in marine or estuarine environments. The Canopy Biomass Lidar (CBL) is an inexpensive, highly portable, fast-scanning, time-of-flight, TLS instrument, originally conceived by the Katholieke Universiteit Leuven (KUL) and refined by the Rochester Institute of Technology (RIT). Two new CBLs, constructed by the University of Massachusetts Boston (UMB), have been successfully deployed in deciduous and conifer forests at Long Term Ecological Research (LTER) and National Ecological Observatory Network (NEON) sites in Massachusetts (Harvard Forest) and California (Sierra National Forest), and in eucalypt forests at long-term and Terrestrial Ecosystem Research Network (TERN) sites in Queensland, Australia. Both the UMB and RIT CBLs have also been deployed in savanna systems at the San Joaquin Rangeland (and NEON site) in California. The UMB CBLs are now being deployed in salt marsh systems in Massachusetts with plans underway to deploy them in mangrove forests later in the year. In particular, they are being used to characterize the water facing edge of saltmarsh at UMB's Nantucket Island field station and remnant salt marshes on the highly urbanized Neponset estuary draining into Boston Harbor. While CBL's 905nm nearIR wavelength is of little use in nearshore inundated systems (such as eel grass and kelp), it is excellent for characterizing 3D foliage structure via multiple scan point clouds. The system is light and the scanning is rapid enough (30seconds for a full hemispherical scan) to be deployed manually or in small watercraft. The portability also means that it can be used frequently to monitor vegetation dynamics throughout the growing season and assess marsh damage and erosion after severe storms. While airborne lidar and hyperspectral data and high resolution satellite imagery (and indeed even the more frequently available coarser resolution multispectral satellite imagery from the newly launched Landsat 8) will provide the most expansive views of such environments, tools such as the CBL can provide important ancillary information to augment the remote sensing data and provide rapid and fine scale shore level details to improve modeling and monitoring of these coastal vegetation ecosystems.
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NASA Astrophysics Data System (ADS)
Fischer, Mauro; Huss, Matthias; Kummert, Mario; Hoelzle, Martin
2016-06-01
Due to the relative lack of empirical field data, the response of very small glaciers (here defined as being smaller than 0.5 km2) to current atmospheric warming is not fully understood yet. Investigating their mass balance, e.g. using the direct glaciological method, is a prerequisite to fill this knowledge gap. Terrestrial laser scanning (TLS) techniques operating in the near infrared range can be applied for the creation of repeated high-resolution digital elevation models and consecutive derivation of annual geodetic mass balances of very small glaciers. This method is promising, as laborious and potentially dangerous field measurements as well as the inter- and extrapolation of point measurements can be circumvented. However, it still needs to be validated. Here, we present TLS-derived annual surface elevation and geodetic mass changes for five very small glaciers in Switzerland (Glacier de Prapio, Glacier du Sex Rouge, St. Annafirn, Schwarzbachfirn, and Pizolgletscher) and two consecutive years (2013/14-2014/15). The scans were acquired with a long-range Riegl -6000 especially designed for surveying snow- and ice-covered terrain. Zonally variable conversion factors for firn and bare ice surfaces were applied to convert geodetic volume to mass changes. We compare the geodetic results to direct glaciological mass balance measurements coinciding with the TLS surveys and assess the uncertainties and errors included in both methods. Average glacier-wide mass balances were negative in both years, showing stronger mass losses in 2014/15 (-1.65 m w.e.) compared to 2013/14 (-0.59 m w.e.). Geodetic mass balances were slightly less negative but in close agreement with the direct glaciological ones (R2 = 0.91). Due to the dense in situ measurements, the uncertainties in the direct glaciological mass balances were small compared to the majority of measured glaciers worldwide (±0.09 m w.e. yr-1 on average), and similar to uncertainties in the TLS-derived geodetic mass balances (±0.13 m w.e. yr-1).
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NASA Astrophysics Data System (ADS)
Williams, R.; Lamy, M. L.; Stott, E.; Maniatis, G.
2017-12-01
In the last two decades, quantification of fluvial topography has been transformed by a number of geomatics technologies that have enabled the acquisition of data with unprecedented spatial resolution. Hyperscale surveys with spatial extents of <1 km2 have been widely demonstrated, by means of Terrestrial Laser Scanning (TLS) and Structure-from-Motion (SfM) photogrammetry. Recent advances in the development and integration of GNSS, IMU, lightweight laser scanning and SLAM technologies are now resulting in the emergence of wearable, mobile laser scanning systems that have the potential to increase data acquisition and processing rates by 1-2 orders of magnitude compared to TLS/SfM, and thus challenge the recent dominance of these two geomatics technologies. In this study we describe the methods and results of a comparison between a wearable laser scanning survey, using a Leica Pegasus Backpack, and a multi-station static TLS survey, using a Riegl VZ-1000 scanner. The evaluation is undertaken on a 600 m long reach of the braided River Feshie, Scotland, using data acquired in June 2017. Comparison between the DEMs produced from static and mobile laser scanning, across non-vegetated areas, revealed a Mean Error (ME) of -0.002 m and a Standard Deviation Error (SDE) of 0.109 m. Comparison to 100 independent check point resulted in a similar ME and SDE for static (ME = 0.061m; SDE = 0.030 m) and mobile (ME = 0.044 m; SDE = 0.029 m) laser scanning. Empirical relationships between sub-metre topographic variability and median sediment grain size (10-100 mm), across 14 grid-by-number samples, were similar and demonstrate that surface roughness from wearable laser scanning can be used to derive reach-scale maps of median grain size. These results demonstrate that wearable laser scanning generates hyperscale topographic models that are comparable in quality to more time-consuming multi-station TLS setups. Wearable laser scanning is likely to be commonly adopted for fluvial topographic surveys and will become established as a versatile survey technology.
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Takai, Mihoko; Yamauchi, Takahiro; Ookura, Miyuki; Matsuda, Yasufumi; Tai, Katsunori; Kishi, Shinji; Yoshida, Akira; Iwasaki, Hiromichi; Nakamura, Toru; Ueda, Takanori
2014-12-01
Tumor lysis syndrome (TLS) is a life-threatening oncological emergency, and control of serum uric acid level (S-UA) is most important. In this single-institution, short-term and pilot prospective study, the efficacy of a new xanthine oxidase inhibitor, febuxostat, as an alternative to conventional allopurinol, including its effects on hypoxanthine and xanthine, was evaluated in 10 consecutive patients with hematological malignancies at intermediate risk for TLS. Febuxostat at 40 mg (n=7) or 60 mg (n=3) daily was administered according to renal function, and induction chemotherapy was started within 24 h. The primary end-point was the reduction of S-UA to ≤ 7.5 mg/dl by day 5. The median S-UA at base-line was 8.0 mg/dl (range=3.2-10.6 mg/dl). The median S-UA on day 5 after chemotherapy was 3.3 mg/dl (range=1.1-5.8 mg/dl) (p<0.0001, by paired t-test), indicating successful control of S-UA during chemotherapy. All patients achieved S-UA ≤ 7.5 mg/dl. A simultaneous decrease in serum creatinine and increase in estimated glomerular filtration rate were seen. Serum hypoxanthine and xanthine levels (as the consequence of inhibition of xanthine oxidase) were elevated along with the decrease in S-UA. Xanthine level was elevated higher compared to hypoxanthine level and reached the level reported to cause xanthine nephropathy, but no advance of renal impairment was observed. Serum febuxostat concentrations at 2 h after administration were 891.8 ± 285.0 ng/ml (mean ± SE) for the 40-mg dose and 770.6 ± 242.7 ng/ml for the 60-mg dose (p=0.80, unpaired t-test), showing no accumulation in patients with renal impairment. No febuxostat-related adverse reactions were noted. No patients experienced progressive TLS. Febuxostat is promising for the management of TLS of an intermediate-risk patient and further observation and reevaluation regarding xanthine nephropathy should be performed. Copyright© 2014 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.
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Integrating Airborne and Terrestrial Laser Scanning data to monitor active landsliding
NASA Astrophysics Data System (ADS)
Székely, B.; Molnár, G.; Roncat, A.; Lehner, H.; Gaisecker, Th.; Drexel, P.
2009-04-01
Active slope processes often endanger various built-up objects and, as a consequence, sometimes human lives as well. Data acquision on the status and evolution of such slopes, especially those that had already affected by landsliding, therefore is a primary target for engineering geomorphic research. The method of laser scanning provides an appropriate data collection technique with the requested accuracy. Data from repeated Airborne Laser Scanning (ALS) campaigns are suitable to be analysed for the slow, incipient movements of the slope. The problem of this surveying technique is that repetition time is strongly dependent on the financial resources of the monitoring project, and often the requested recurrence of flight campaigns cannot be achieved. A possible solution to densify the data acquisition in time is the application of Terrestrial Laser Scanning (TLS) and intergration of its data with ALS data sets. TLS has the advantage of flexibility and shorter observation distances compared to ALS. This technique needs special considerations and tedious processing since the geometric setting of the data acquision considerably differ in TLS and ALS. Furthermore, obstacles in the landscape may partly hamper the data acqusition which rarely the case in ALS. Our case study area is a several-decade-long active landsliding in Doren (Federal State Vorarlberg, Austria) that as it develops, it is about to endangers houses of the locality. The site is especially suitable for the project, because multi-temporal data sets (from ALS flight campaigns in 2003, 2006 and 2007, respectively) of this area are available. The data integration is carried out in the form of production of point clouds (sensed from various points of the valley sides) and we compared the results with the results of the previous ALS campaigns. With the planned repetition of the TLS measurements new and detailed insights can be achieved concerning the evolution of the incipient and on-going slow motions. This project has been supported by the Austrian Academy of Sciences (ÖAW) within the framework of scheme "Geophysics of the Earth's crust", Riegl GmbH generously provided a full-waveform terrestrial laser scanning device.
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Thompson, Larry H.; Hinz, John M.
2009-01-01
The Fanconi anemia (FA) molecular network consists of 15 “FANC” proteins, of which 13 are associated with mutations in patients with this cancer-prone chromosome instability disorder. Whereas historically the common phenotype associated with FA mutations is marked sensitivity to DNA interstrand crosslinking agents, the literature supports a more global role for FANC proteins in coping with diverse stresses encountered by replicative polymerases. We have attempted to reconcile and integrate numerous observations into a model in which FANC proteins coordinate the following physiological events during DNA crosslink repair: (a) activating a FANCM-ATR-dependent S-phase checkpoint; (b) mediating enzymatic replication-fork breakage and crosslink unhooking; (c) filling the resulting gap by translesion synthesis (TLS) by error-prone polymerase(s); and (d) restoring the resulting one-ended double-strand break by homologous recombination repair (HRR). The FANC core subcomplex (FANCA, B, C, E, F, G, L, FAAP100) promotes TLS for both crosslink and non-crosslink damage such as spontaneous oxidative base damage, UV-C photoproducts, and alkylated bases. TLS likely helps prevent stalled replication forks from breaking, thereby maintaining chromosome continuity. Diverse DNA damages and replication inhibitors result in monoubiquitination of the FANCD2-FANCI complex by the FANCL ubiquitin ligase activity of the core subcomplex upon its recruitment to chromatin by the FANCM-FAAP24 heterodimeric translocase. We speculate that this translocase activity acts as the primary damage sensor and helps remodel blocked replication forks to facilitate checkpoint activation and repair. Monoubiquitination of FANCD2-FANCI is needed for promoting HRR, in which the FANCD1/BRCA2 and FANCN/PALB2 proteins act at an early step. We conclude that the core subcomplex is required for both TLS and HRR occurring separately for non-crosslink damages and for both events during crosslink repair. The FANCJ/BRIP1/BACH1 helicase functions in association with BRCA1 and may remove structural barriers to replication, such as guanine quadruplex structures, and/or assist in crosslink unhooking. PMID:19622404
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NASA Astrophysics Data System (ADS)
Yarbrough, L. D.; Katzenstein, K.
2012-12-01
Exposing students to active and local examples of physical geologic processes is beneficial to the learning process. Students typically respond with interest to examples that use state-of-the-art technologies to investigate local or regional phenomena. For lower cognitive level of learning (e.g. knowledge, comprehension, and application), the use of "close-to-home" examples ensures that students better understand concepts. By providing these examples, the students may already have a familiarity or can easily visit the location. Furthermore, these local and regional examples help students to offer quickly other examples of similar phenomena. Investigation of these examples using normal photographic techniques, as well as a more sophisticated 3-D Light Detection And Ranging (LiDAR) (AKA Terrestrial Laser Scanning or TLS) system, allows students to gain a better understanding of the scale and the mechanics of the geologic processes and hazards. The systems are used for research, teaching and outreach efforts and depending on departmental policies can be accessible to students are various learning levels. TLS systems can yield scans at sub-centimeter resolution and contain surface reflectance of targets. These systems can serve a number of learning goals that are essential for training geoscientists and engineers. While querying the data to answer geotechnical or geomorphologic related questions, students will develop skills using large, spatial databases. The upper cognitive level of learning (e.g. analysis, synthesis, and evaluation) is also promoted by using a subset of the data and correlating the physical geologic process of stream bank erosion and rock slope failures with mathematical and computer models using the scanned data. Students use the examples and laboratory exercises to help build their engineering judgment skills with Earth materials. The students learn not only applications of math and engineering science but also the economic and social implication of designed engineering solutions. These course learning modules were developed for traditional geological engineering courses delivered on campus, for more intensive field work courses and online-based asynchronous course delivery.
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Comparing data of terrestrial LiDAR and UAV (photogrammetric) in the context of the project "SedAlp"
NASA Astrophysics Data System (ADS)
Abel, Judith; Wegner, Kerstin; Haas, Florian; Heckmann, Tobias; Becht, Michael
2014-05-01
The project "SedAlp" (Sediment management in Alpine basins: integrating sediment continuum, risk mitigation and hydropower) concentrates on problems and approaches related to sediment transfer in the alpine region and is embedded in the European transnational cooperation program "Alpine Space". The catholic University Eichstätt-Ingolstadt contributes the German part to this project on behalf of the Bavarian Environment Agency and in collaboration with the Authority of Water Resources Weilheim. The area of interest is the river Isar between the Sylvenstein reservoir and the city of Bad Tölz, Bavaria, Germany. The main aim of the activities is to quantify the transfer of sediments from the tributary catchments to the river Isar, specifically in light of the fact that the construction of the Sylvenstein reservoir in the mid 1950ies has created a barrier to longitudinal sediment transfer, thus heavily impacting the sediment budget and morphodynamics of the Isar reaches downstream. Moreover, the further development of artificially inserted gravel deposits and the effect of dismantling reinforcement structures at the river banks need investigation. Therefore, the dynamics of alluvial fans and gravel bars in the areas of confluence of tributary torrents are monitored using multitemporal surveys with terrestrial laserscanners and drone-based imagery. The latter is used both for the generation of high-resolution digital elevation models and for the mapping of changes in comparison to historical aerial photos. This study focuses on a comparison of TLS and UAV-based photogrammetric digital elevation models in order to highlight advantages and disadvantages of the two methods in relation to the SedAlp-specific research problems. It is shown that UAV-based elevation models are highly accurate alternatives to TLS-based models; due to their favourable acquisition geometry with respect to the topography in floodplain areas, and their large areal coverage, their use is seen as advantageous.
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NASA Astrophysics Data System (ADS)
Scheidt, S. P.; Whelley, P.; Hamilton, C.; Bleacher, J. E.; Garry, W. B.
2015-12-01
The December 31, 1974 lava flow from Kilauea Caldera, Hawaii within the Hawaii Volcanoes National Park was selected for field campaigns as a terrestrial analog for Mars in support of NASA Planetary Geology and Geophysics (PGG) research and the Remote, In Situ and Synchrotron Studies for Science and Exploration (RIS4E) node of the Solar System Exploration Research Virtual Institute (SSERVI) program). The lava flow was a rapidly emplaced unit that was strongly influenced by existing topography, which favored the formation of a tributary lava flow system. The unit includes a diverse range of surface textures (e.g., pāhoehoe, ´áā, and transitional lavas), and structural features (e.g., streamlined islands, pits, and interactions with older tumuli). However, these features are generally below the threshold of visibility within previously acquired airborne and spacecraft data. In this study, we have generated unique, high-resolution digital images using low-altitude Kite Aerial Photography (KAP) system during field campaigns in 2014 and 2015 (National Park Service permit #HAVO-2012-SCI-0025). The kite-based mapping platform (nadir-viewing) and a radio-controlled gimbal (allowing pointing) provided similar data as from an unmanned aerial vehicle (UAV), but with longer flight time, larger total data volumes per sortie, and fewer regulatory challenges and cost. Images acquired from KAP and UAVs are used to create orthomosaics and DEMs using Multi-View Stereo-Photogrammetry (MVSP) software. The 3-Dimensional point clouds are extremely dense, resulting in a grid resolution of < 2 cm. Airborne Light Detection and Ranging (LiDAR) / Terrestrial Laser Scanning (TLS) data have been collected for these areas and provide a basis of comparison or "ground truth" for the photogrammetric data. Our results show a good comparison with LiDAR/TLS data, each offering their own unique advantages and potential for data fusion.
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A novel type of EWS-CHOP fusion gene in myxoid liposarcoma
DOE Office of Scientific and Technical Information (OSTI.GOV)
Matsui, Yoshito; Ueda, Takafumi; Kubo, Takahiro
2006-09-22
The cytogenetic hallmark of myxoid type and round cell type liposarcoma consists of reciprocal translocation of t(12;16)(q13;p11) and t(12;22)(q13;q12), which results in fusion of TLS/FUS and CHOP, and EWS and CHOP, respectively. Nine structural variations of the TLS/FUS-CHOP chimeric transcript have been reported, however, only two types of EWS-CHOP have been described. We describe here a case of myxoid liposarcoma containing a novel EWS-CHOP chimeric transcript and identified the breakpoint occurring in intron 13 of EWS. Reverse transcription-polymerase chain reaction and direct sequence showed that exon 13 of EWS was in-frame fused to exon 2 of CHOP. Genomic analysis revealedmore » that the breaks were located in intron 13 of EWS and intron 1 of CHOP.« less
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Verification of OpenSSL version via hardware performance counters
NASA Astrophysics Data System (ADS)
Bruska, James; Blasingame, Zander; Liu, Chen
2017-05-01
Many forms of malware and security breaches exist today. One type of breach downgrades a cryptographic program by employing a man-in-the-middle attack. In this work, we explore the utilization of hardware events in conjunction with machine learning algorithms to detect which version of OpenSSL is being run during the encryption process. This allows for the immediate detection of any unknown downgrade attacks in real time. Our experimental results indicated this detection method is both feasible and practical. When trained with normal TLS and SSL data, our classifier was able to detect which protocol was being used with 99.995% accuracy. After the scope of the hardware event recording was enlarged, the accuracy diminished greatly, but to 53.244%. Upon removal of TLS 1.1 from the data set, the accuracy returned to 99.905%.
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As- built inventory of the office building with the use of terrestrial laser scanning
NASA Astrophysics Data System (ADS)
Przyborski, Marek; Tysiąc, Paweł
2018-01-01
Terrestrial Laser Scanning (TLS) is an efficient tool for building inventories. Based on the red- laser beam technology it is possible to provide the high accuracy data with complete spatial information about a scanned object. In this article, authors present the solution of use a TLS in as-built inventory of the office building. Based on the provided data, it is possible to evaluate the correctness of built details of a building and provide information for further construction works, for example an area needed for Styrofoam installation. The biggest problem in this research is that an error which equals over 1cm could generate costs, which could be a problem to cover by a constructor. Based on a complicated place of the construction works (centre of a city) it was a challenge to maintain the accuracy.
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NASA Astrophysics Data System (ADS)
Xu, Dazhi; Ian, Hou; Shi, Tao; Dong, Hui; Sun, Changpu
2010-07-01
Feshbach resonance is a resonance for two-atom scattering with two or more channels, in which a bound state is achieved in one channel. We show that this resonance phenomenon not only exists during the collisions of massive particles, but also emerges during the coherent transport of massless particles, that is, photons confined in the coupled resonator arrays linked by a separated cavity or a tunable two level system (TLS). When the TLS is coupled to one array to form a bound state in this setup, the vanishing transmission appears to display the photonic Feshbach resonance. This process can be realized through various experimentally feasible solid state systems, such as the couple defected cavities in photonic crystals and the superconducting qubit coupled to the transmission line. The numerical simulation based on the finite-different time-domain (FDTD) method confirms our assumption about the physical implementation.
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Hirt, Christian; Papadimitropoulos, Adam; Muraro, Manuele G; Mele, Valentina; Panopoulos, Evangelos; Cremonesi, Eleonora; Ivanek, Robert; Schultz-Thater, Elke; Droeser, Raoul A; Mengus, Chantal; Heberer, Michael; Oertli, Daniel; Iezzi, Giandomenica; Zajac, Paul; Eppenberger-Castori, Serenella; Tornillo, Luigi; Terracciano, Luigi; Martin, Ivan; Spagnoli, Giulio C
2015-09-01
Anticancer compound screening on 2D cell cultures poorly predicts "in vivo" performance, while conventional 3D culture systems are usually characterized by limited cell proliferation, failing to produce tissue-like-structures (TLS) suitable for drug testing. We addressed engineering of TLS by culturing cancer cells in porous scaffolds under perfusion flow. Colorectal cancer (CRC) HT-29 cells were cultured in 2D, on collagen sponges in static conditions or in perfused bioreactors, or injected subcutaneously in immunodeficient mice. Perfused 3D (p3D) cultures resulted in significantly higher (p < 0.0001) cell proliferation than static 3D (s3D) cultures and yielded more homogeneous TLS, with morphology and phenotypes similar to xenografts. Transcriptome analysis revealed a high correlation between xenografts and p3D cultures, particularly for gene clusters regulating apoptotic processes and response to hypoxia. Treatment with 5-Fluorouracil (5-FU), a frequently used but often clinically ineffective chemotherapy drug, induced apoptosis, down-regulation of anti-apoptotic genes (BCL-2, TRAF1, and c-FLIP) and decreased cell numbers in 2D, but only "nucleolar stress" in p3D and xenografts. Conversely, BCL-2 inhibitor ABT-199 induced cytotoxic effects in p3D but not in 2D cultures. Our findings advocate the importance of perfusion flow in 3D cultures of tumor cells to efficiently mimic functional features observed "in vivo" and to test anticancer compounds. Copyright © 2015 Elsevier Ltd. All rights reserved.
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Kozmin, Stanislav G; Pavlov, Youri I; Kunkel, Thomas A; Sage, Evelyne
2003-08-01
Sunlight causes lesions in DNA that if unrepaired and inaccurately replicated by DNA polymerases yield mutations that result in skin cancer in humans. Two enzymes involved in translesion synthesis (TLS) of UV-induced photolesions are DNA polymerase eta (Poleta) and polymerase zeta (Polzeta), encoded by the RAD30A and REV3 genes, respectively. Previous studies have investigated the TLS roles of these polymerases in human and yeast cells irradiated with monochromatic, short wavelength UVC radiation (254 nm). However, less is known about cellular responses to solar radiation, which is of higher and mixed wavelengths (310-1100 nm) and produces a different spectrum of DNA lesions, including Dewar photoproducts and oxidative lesions. Here we report on the comparative cytotoxic and mutagenic effects of simulated sunlight (SSL) and UVC radiation on yeast wild-type, rad30Delta, rev3Delta and rev3Delta rad30Delta strains. The results with SSL support several previous interpretations on the roles of these two polymerases in TLS of photodimers and (6-4) photoproducts derived from studies with UVC. They further suggest that Poleta participates in the non-mutagenic bypass of SSL-dependent cytosine-containing Dewar photoproducts and 8-oxoguanine, while Polzeta is mainly responsible for the mutagenic bypass of all types of Dewar photoproducts. They also suggest that in the absence of Polzeta, Poleta contributes to UVC- and SSL-induced mutagenesis, possibly by the bypass of photodimers containing deaminated cytosine.
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Hydrogen Isotopic Composition of Water in the Martian Atmosphere and Released from Rocknest Fines
NASA Technical Reports Server (NTRS)
Leshin, L. A.; Webster, C. R.; Mahaffy, P. R.; Flesh, G. J.; Christensen, L. E.; Stern, J. C.; Franz, H. B.; McAdam, A. C.; Niles, P. B.; Archer, P. B., Jr.;
2013-01-01
The Mars Science Laboratory Curiosity rover sampled the aeolian bedform called Rocknest as its first solid samples to be analyzed by the analytical instruments CheMin and SAM. The instruments ingested aliquots from a sieved sample of less than 150 micrometer grains. As discussed in other reports at this conference [e.g., 1], CheMin discovered many crystalline phases, almost all of which are igneous minerals, plus some 10s of percent of x-ray amorphous material. The SAM instrument is focused on understanding volatiles and possible organics in the fines, performing evolved gas analysis (EGA) with the SAM quadrapole mass spectrometer (QMS), isotope measurements using both the QMS and the tunable laser spectrometer (TLS), which is sensitive to CO2, water and methane, and organics with the gas chromatograph mass spectrometer (GCMS). As discussed in the abstract by Franz et al. [2] and others, EGA of Rocknest fines revealed the presence of significant amounts of H2O as well as O-, C- and S-bearing materials. SAM has also tasted the martian atmosphere several times, analyzing the volatiles in both the TLS and QMS [e.g., 3,4]. This abstract will focus on presentation of initial hydrogen isotopic data from the TLS for Rocknest soils and the atmosphere, and their interpretation. Data for CO2 isotopes and O isotopes in water are still being reduced, but should be available by at the conference.
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NASA Astrophysics Data System (ADS)
Bid, Aveek; Raychaudhuri, Arup K.
2003-05-01
We have investigated the dynamics of co-existing phases in the Charge Ordered (CO) manganite Pr0.63Ca0.37MnO3 using the technique of conductance noise spectroscopy. We note that close to the CO transition temperature Tco the spectral power of Sv(f)/V2 deviates significantly from the 1/f frequency dependence for f<=0.12Hz. Our analysis shows that this deviation can be described by a single frequency Lorentzian with corner frequency fc in addition to the usual broadband 1/f noise. Such a Lorentzian contribution to Sv(f)/V2 can come from a two level system (TLS). In the time serioues this shows up as RTN. For T<=Tco the system shows the onset of a non-linear conduction close to a threshold value Jdc = Jth the noise spectra is mainly 1/f in nature. For J > Jth a large low frequency component of noise (characterized again by a frequency fc) appears. We associate fc with the relaxation time tc of the TLS fluctuator so the tc = 1/fc. For thermal activation of the TLS the temperature dependence of fc will follow fc=foexp(-Ea/kBT) where Ea is an energy barrier. The value of fc shows an increase with Jdc showing that the value of the activation energy Ea is being lowered by the applied bias.
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Evolution of Local Microstructures (ELMS): Spatial Instabilities of Coarsening
NASA Technical Reports Server (NTRS)
Glicksman, Martin E.; Frazier, Donald O.; Rogers, Jan R.; Witherow, William K.; Downey, J. Patton; Facemire, Barbara R.
1999-01-01
This work examines the diffusional growth of discrete phase particles dispersed within a matrix. Engineering materials are microstructurally heterogeneous, and the details of the microstructure determine how well that material performs in a given application. Critical to the development of designing multiphase microstructures with long-term stability is the process of Ostwald ripening. Ripening, or phase coarsening, is a diffusion-limited process which arises in polydisperse multiphase materials. Growth and dissolution occur because fluxes of solute, driven by chemical potential gradients at the interfaces of the dispersed phase material, depend on particle size. The kinetics of these processes are "competitive," dictating that larger particles grow at the expense of smaller ones, overall leading to an increase of the average particle size. The classical treatment of phase coarsening was done by Todes, Lifshitz, and Slyozov, (TLS) in the limit of zero volume fraction, V(sub v), of the dispersed phase. Since the publication of TLS theory there have been numerous investigations, many of which sought to describe the kinetic scaling behavior over a range of volume fractions. Some studies in the literature report that the relative increase in coarsening rate at low (but not zero) volume fractions compared to that / 2 1/ 3 predicted by TLS is proportional to V(sub v)(exp 1/2), whereas others suggest V(sub v)(exp 1/3). This issue has been resolved recently by simulation studies at low volume fractions in three dimensions by members of the Rensselaer/MSFC team.
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Spatiotemporal surface moisture dynamics on a coastal beach
NASA Astrophysics Data System (ADS)
Smit, Y.; Donker, J.; Ruessink, G.
2017-12-01
Surface moisture strongly controls aeolian transport on a beach and, accordingly, understanding its spatiotemporal variability will aid in developing a predictive model for the aeolian input of wind-blown beach sand into the foredune. In our earlier work (Smit et al., 2017, Aeolian Research) we have illustrated that the reflectance signal of a near-infrared Terrestrial Laser Scanner (TLS) corresponds well to gravimetric surface moisture content (in %) over its full range. Here, we analyze TLS-derived surface moisture maps with a 1x1 m spatial and a 15-min temporal resolution and concurrent groundwater measurements collected during a falling and rising tide at Egmond beach, the Netherlands. The maps show that the beach can be conceptualized into three surface moisture zones. First, the swash zone: 18% - 25%. Second, the intertidal zone: 5% - 25% (large fluctuations). A striking result for this zone is that surface moisture can decrease with a rate varying between 2.5% - 4% per hour, and cumulatively 16% during a single falling tide. And third, the back beach zone: 3% - 7%. During falling tide surface moisture fluctuations are strongly linked to the behavior of groundwater depth. A clear `Van Genuchten-type' retention curve can describe the relation between the two. Furthermore, no anticipated processes by capillary forces were observed in advance of the rising tide and no hysteresis was observed over de complete tidal cycle. Concluding, the TLS-derived moisture maps and the groundwater measurements clearly show that groundwater depth is the key control on spatiotemporal surface moisture variations.
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NASA Astrophysics Data System (ADS)
Dotta, Giulia; Gigli, Giovanni; Ferrigno, Federica; Gabbani, Giuliano; Nocentini, Massimiliano; Lombardi, Luca; Agostini, Andrea; Nolesini, Teresa; Casagli, Nicola
2017-09-01
The shipwreck of the Costa Concordia cruise ship, which ran aground on 13 January 2012 on the northwestern coast of Giglio Island (Italy), required continuous monitoring of the position and movement of the vessel to guarantee the security of workers and rescuers operating around and within the wreck and to support shipwreck removal operations. Furthermore, understanding the geomechanical properties and stability behaviour of the coastal rock mass and rocky seabed underlying the ship was of similar importance. To assess the stability conditions of the ship, a ground-based monitoring system was installed in front of the wreck. The network included a terrestrial laser scanner (TLS) device, which was used to perform remote semiautomatic geomechanical characterization of the observed rock mass. Using TLS survey techniques, three main discontinuity sets were identified in the granitic rock mass of Giglio Island. Furthermore, a multibeam bathymetric survey was used to qualitatively characterize the seabed. To integrate the processed TLS data and quantitatively describe the rock mass quality, a subsequent field survey was carried out to provide a rock mass geomechanical evaluation (from very good to moderate quality). Based on the acquired information, kinematic and stability analyses were performed to create a spatial prediction of rock failure mechanisms in the study area. The obtained kinematic hazard index values were generally low; only the plane failure index reached slightly higher values. The general stability of the rock mass was confirmed by the stability analysis, which yielded a high safety factor value (approximately 12).
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NASA Technical Reports Server (NTRS)
Webster, Christopher R.; Mahaffy, Paul R.
2011-01-01
Understanding the origin of Martian methane will require numerous complementary measurements from both in situ and remote sensing investigations and laboratory work to correlate planetary surface geophysics with atmospheric dynamics and chemistry. Three instruments (Quadrupole Mass Spectrometer (QMS), Gas Chromatograph (GC) and Tunable Laser Spectrometer (TLS)) with sophisticated sample handling and processing capability make up the Sample Analysis at Mars (SAM) analytical chemistry suite on NASA s 2011 Mars Science Laboratory (MSL) Mission. Leveraging off the SAM sample and gas processing capability that includes methane enrichment, TLS has unprecedented sensitivity for measuring absolute methane (parts-per-trillion), water, and carbon dioxide abundances in both the Martian atmosphere and evolved from heated soil samples. In concert with a wide variety of associated trace gases (e.g. SO2, H2S, NH3, higher hydrocarbons, organics, etc.) and other isotope ratios measured by SAM, TLS will focus on determining the absolute abundances of methane, water and carbon dioxide, and their isotope ratios: 13C/12C and D/H in methane; 13C/12C and 18O/17O/16O in carbon dioxide; and 18O/17O/16O and D/H in water. Measurements near the MSL landing site will be correlated with satellite (Mars Express, Mars 2016) and ground-based observations.
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Donigan, Katherine A; McLenigan, Mary P; Yang, Wei; Goodman, Myron F; Woodgate, Roger
2014-03-28
Accurate DNA synthesis in vivo depends on the ability of DNA polymerases to select dNTPs from a nucleotide pool dominated by NTPs. High fidelity replicative polymerases have evolved to efficiently exclude NTPs while copying long stretches of undamaged DNA. However, to bypass DNA damage, cells utilize specialized low fidelity polymerases to perform translesion DNA synthesis (TLS). Of interest is human DNA polymerase ι (pol ι), which has been implicated in TLS of oxidative and UV-induced lesions. Here, we evaluate the ability of pol ι to incorporate NTPs during DNA synthesis. pol ι incorporates and extends NTPs opposite damaged and undamaged template bases in a template-specific manner. The Y39A "steric gate" pol ι mutant is considerably more active in the presence of Mn(2+) compared with Mg(2+) and exhibits a marked increase in NTP incorporation and extension, and surprisingly, it also exhibits increased dNTP base selectivity. Our results indicate that a single residue in pol ι is able to discriminate between NTPs and dNTPs during DNA synthesis. Because wild-type pol ι incorporates NTPs in a template-specific manner, certain DNA sequences may be "at risk" for elevated mutagenesis during pol ι-dependent TLS. Molecular modeling indicates that the constricted active site of wild-type pol ι becomes more spacious in the Y39A variant. Therefore, the Y39A substitution not only permits incorporation of ribonucleotides but also causes the enzyme to favor faithful Watson-Crick base pairing over mutagenic configurations.
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Integration of Geodata in Documenting Castle Ruins
NASA Astrophysics Data System (ADS)
Delis, P.; Wojtkowska, M.; Nerc, P.; Ewiak, I.; Lada, A.
2016-06-01
Textured three dimensional models are currently the one of the standard methods of representing the results of photogrammetric works. A realistic 3D model combines the geometrical relations between the structure's elements with realistic textures of each of its elements. Data used to create 3D models of structures can be derived from many different sources. The most commonly used tool for documentation purposes, is a digital camera and nowadays terrestrial laser scanning (TLS). Integration of data acquired from different sources allows modelling and visualization of 3D models historical structures. Additional aspect of data integration is possibility of complementing of missing points for example in point clouds. The paper shows the possibility of integrating data from terrestrial laser scanning with digital imagery and an analysis of the accuracy of the presented methods. The paper describes results obtained from raw data consisting of a point cloud measured using terrestrial laser scanning acquired from a Leica ScanStation2 and digital imagery taken using a Kodak DCS Pro 14N camera. The studied structure is the ruins of the Ilza castle in Poland.
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NASA Astrophysics Data System (ADS)
Muzylev, Eugene; Startseva, Zoya; Uspensky, Alexander; Volkova, Elena; Kukharsky, Alexander; Uspensky, Sergey
2015-04-01
To date, physical-mathematical modeling processes of land surface-atmosphere interaction is considered to be the most appropriate tool for obtaining reliable estimates of water and heat balance components of large territories. The model of these processes (Land Surface Model, LSM) developed for vegetation period is destined for simulating soil water content W, evapotranspiration Ev, vertical latent LE and heat fluxes from land surface as well as vertically distributed soil temperature and moisture, soil surface Tg and foliage Tf temperatures, and land surface skin temperature (LST) Ts. The model is suitable for utilizing remote sensing data on land surface and meteorological conditions. In the study these data have been obtained from measurements by scanning radiometers AVHRR/NOAA, MODIS/EOS Terra and Aqua, SEVIRI/geostationary satellites Meteosat-9, -10 (MSG-2, -3). The heterogeneity of the land surface and meteorological conditions has been taken into account in the model by using soil and vegetation characteristics as parameters and meteorological characteristics as input variables. Values of these characteristics have been determined from ground observations and remote sensing information. So, AVHRR data have been used to build the estimates of effective land surface temperature (LST) Ts.eff and emissivity E, vegetation-air temperature (temperature at the vegetation level) Ta, normalized vegetation index NDVI, vegetation cover fraction B, the leaf area index LAI, and precipitation. From MODIS data the values of LST Tls, Å, NDVI, LAI have been derived. From SEVIRI data there have been retrieved Tls, E, Ta, NDVI, LAI and precipitation. All named retrievals covered the vast territory of the part of the agricultural Central Black Earth Region located in the steppe-forest zone of European Russia. This territory with coordinates 49°30'-54°N, 31°-43°E and a total area of 227,300 km2 has been chosen for investigation. It has been carried out for years 2009-2013 vegetation seasons. To provide the retrieval of Ts.eff, E, Ta, NDVI, B, and LAI the previously developed technologies of AVHRR data processing have been refined and adapted to the region of interest. The updated linear regression estimators for Ts.eff and Tà have been built using representative training samples compiled for above vegetation seasons. The updated software package has been applied for AVHRR data processing to generate estimates of named values. To verify the accuracy of these estimates the error statistics of Ts.eff and Ta derivation has been investigated for various days of named seasons using comparison with in-situ ground-based measurements. On the base of special technology and Internet resources the remote sensing products Tls, E, NDVI, LAI derived from MODIS data and covering the study area have been extracted from LP DAAC web-site for the same vegetation seasons. The reliability of the MODIS-derived Tls estimates has been confirmed via comparison with analogous and collocated ground-, AVHRR-, and SEVIRI-based ones. The prepared remote sensing dataset has also included the SEVIRI-derived estimates of Tls, E, NDVI, Ta at daylight and night-time and daily estimates of LAI. The Tls estimates has been built utilizing the method and technology developed for the retrieval of Tls and E from 15 minutes time interval SEVIRI data in IR channels 10.8 and 12.0 µm (classified as 100% cloud-free and covering the area of interest) at three successive times without accurate a priori knowledge of E. Comparison of the SEVIRI-based Tls retrievals with independent collocated Tls estimates generated at the Land Surface Analysis Satellite Applications Facility (LSA SAF, Lisbon, Portugal) has given daily- or monthly-averaged values of RMS deviation in the range of 2°C for various dates and months during the mentioned vegetation seasons which is quite acceptable result. The reliability of the SEVIRI-based Tls estimates for the study area has been also confirmed by comparing with AVHRR- and MODIS-derived LST estimates for the same seasons. The SEVIRI-derived values of Ta considered as the temperature of the vegetation cover has been obtained using Tls estimates and a previously found multiple linear regression relationship between Tls and Ta formulated accounting for solar zenith angle and land elevation. A comparison with ground-based collocated Ta observations has given RMS errors of 2.5°C and lower. It can be treated as a proof of the proposed technique's functionality. SEVIRI-derived LAI estimates have been retrieved at LSA SAF from measurements by this sensor in channels 0.6, 0.8, and 1.6 μm under cloud-free conditions at that when using data in the channel 1.6 μm the accuracy of these estimates has increased. In the study the AVHRR- and SEVIRI-derived estimates of daily and monthly precipitation sums for the territory under investigation for the years 2009 - 2013 vegetation seasons have been also used. These estimates have been obtained by the improved integrated Multi Threshold Method (MTM) providing detection and identification of cloud types around the clock throughout the year as well as identification of precipitation zones and determination of instantaneous precipitation maximum intensity within the pixel using the measurement data in different channels of named sensors as predictors. Validation of the MTM has been performed by comparing the daily and monthly precipitation sums with appropriate values resulted from ground-based observations at the meteorological stations of the region. The probability of detecting precipitation zones from satellite data corresponding to the actual ones has been amounted to 70-80%. AVHRR- and SEVIRI-derived daily and monthly precipitation sums have been in reasonable agreement with each other and with results of ground-based observations although they are smoother than the last values. Discrepancies have been noted only for local maxima for which satellite-based estimates of precipitation have been much less than ground-based ones. It may be due to the different spatial scales of areal satellite-derived and point ground-based estimates. To utilize satellite-derived vegetation and meteorological characteristics in the model the special procedures have been developed including: - replacement of ground-based LAI and B estimates used as model parameters by their satellite-derived estimates from AVHRR, MODIS and SEVIRI data. Correctness of such replacement has been confirmed by comparing the time behavior of LAI over the period of vegetation as well as modeled and measured values of evapotranspiration Ev and soil moisture content W; - entering AVHRR-, MODIS- and SEVIRI-derived estimates of Ts.eff Tls, and Ta into the model as input variables instead of ground-measured values with verification of adequacy of model operation under such a change through comparison of the calculated and measured values of W and Ev; - inputing satellite-derived estimates of precipitation during vegetation period retrieved from AVHRR and SEVIRI data using the MTM into the model as input variables. When developing given procedure algorithms and programs have been created to transit from assessment of the rainfall intensity to evaluation of its daily values. The implementation of such a transition requires controlling correctness of the estimates built at each time step. This control includes comparison of areal distributions of three-hour, daily and monthly precipitation amounts obtained from satellite data and calculated by interpolation of standard network observation data; - taking into account spatial heterogeneity of fields of satellite AVHRR-, MODIS- and SEVIRI-derived estimates of LAI, B, LST and precipitation. This has involved the development of algorithms and software for entering the values of all named characteristics into the model in each computational grid node. Values of evapotranspiration E, soil water content W, vertical latent and sensible heat fluxes and other water and heat balance components as well as land surface temperature and moisture area-distributed over the territory of interest have been resulted from the model calculations for the years 2009-2013 vegetation seasons. These calculations have been carried out utilizing satellite-derived estimates of the vegetation characteristics, LST and precipitation. E and W calculation errors have not exceeded the standard values.
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NASA Astrophysics Data System (ADS)
Kromer, Ryan A.; Abellán, Antonio; Hutchinson, D. Jean; Lato, Matt; Chanut, Marie-Aurelie; Dubois, Laurent; Jaboyedoff, Michel
2017-05-01
We present an automated terrestrial laser scanning (ATLS) system with automatic near-real-time change detection processing. The ATLS system was tested on the Séchilienne landslide in France for a 6-week period with data collected at 30 min intervals. The purpose of developing the system was to fill the gap of high-temporal-resolution TLS monitoring studies of earth surface processes and to offer a cost-effective, light, portable alternative to ground-based interferometric synthetic aperture radar (GB-InSAR) deformation monitoring. During the study, we detected the flux of talus, displacement of the landslide and pre-failure deformation of discrete rockfall events. Additionally, we found the ATLS system to be an effective tool in monitoring landslide and rockfall processes despite missing points due to poor atmospheric conditions or rainfall. Furthermore, such a system has the potential to help us better understand a wide variety of slope processes at high levels of temporal detail.
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NASA Astrophysics Data System (ADS)
Ouédraogo, Mohamar Moussa; Degré, Aurore; Debouche, Charles; Lisein, Jonathan
2014-06-01
Agricultural watersheds tend to be places of intensive farming activities that permanently modify their microtopography. The surface characteristics of the soil vary depending on the crops that are cultivated in these areas. Agricultural soil microtopography plays an important role in the quantification of runoff and sediment transport because the presence of crops, crop residues, furrows and ridges may impact the direction of water flow. To better assess such phenomena, 3-D reconstructions of high-resolution agricultural watershed topography are essential. Fine-resolution topographic data collection technologies can be used to discern highly detailed elevation variability in these areas. Knowledge of the strengths and weaknesses of existing technologies used for data collection on agricultural watersheds may be helpful in choosing an appropriate technology. This study assesses the suitability of terrestrial laser scanning (TLS) and unmanned aerial system (UAS) photogrammetry for collecting the fine-resolution topographic data required to generate accurate, high-resolution digital elevation models (DEMs) in a small watershed area (12 ha). Because of farming activity, 14 TLS scans (≈ 25 points m- 2) were collected without using high-definition surveying (HDS) targets, which are generally used to mesh adjacent scans. To evaluate the accuracy of the DEMs created from the TLS scan data, 1098 ground control points (GCPs) were surveyed using a real time kinematic global positioning system (RTK-GPS). Linear regressions were then applied to each DEM to remove vertical errors from the TLS point elevations, errors caused by the non-perpendicularity of the scanner's vertical axis to the local horizontal plane, and errors correlated with the distance to the scanner's position. The scans were then meshed to generate a DEMTLS with a 1 × 1 m spatial resolution. The Agisoft PhotoScan and MicMac software packages were used to process the aerial photographs and generate a DEMPSC (Agisoft PhotoScan) and DEMMCM (MicMac), respectively, with spatial resolutions of 1 × 1 m. Comparing the DEMs with the 1098 GCPs showed that the DEMTLS was the most accurate data product, with a root mean square error (RMSE) of 4.5 cm, followed by the DEMMCM and the DEMPSC, which had RMSE values of 9.0 and 13.9 cm, respectively. The DEMPSC had absolute errors along the border of the study area that ranged from 15.0 to 52.0 cm, indicating the presence of systematic errors. Although the derived DEMMCM was accurate, an error analysis along a transect showed that the errors in the DEMMCM data tended to increase in areas of lower elevation. Compared with TLS, UAS is a promising tool for data collection because of its flexibility and low operational cost. However, improvements are needed in the photogrammetric processing of the aerial photographs to remove non-linear distortions.
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Sod, Gary A; Mitchell, Colin F; Hubert, Jeremy D; Martin, George S; Gill, Marjorie S
2007-12-01
To compare in vitro monotonic biomechanical properties of an equine spoon plate (ESP) with an axial 3-hole, 4.5 mm narrow dynamic compression plate (DCP) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws (DCP-TLS) inserted in lag fashion for equine proximal interphalangeal (PIP) joint arthrodesis. Paired in vitro biomechanical testing of 2 methods of stabilizing cadaveric adult equine forelimb PIP joints. Cadaveric adult equine forelimbs (n=18 pairs). For each forelimb pair, 1 PIP joint was stabilized with an ESP (8 hole, 4.5 mm) and 1 with an axial 3-hole narrow DCP (4.5 mm) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws inserted in lag fashion. Six matching pairs of constructs were tested in single cycle to failure under axial compression with load applied under displacement control at a constant rate of 5 cm/s. Six construct pairs were tested for cyclic fatigue under axial compression with cyclic load (0-7.5 kN) applied at 6 Hz; cycles to failure were recorded. Six construct pairs were tested in single cycle to failure under torsional loading applied at a constant displacement rate (0.17 radians/s) until rotation of 0.87 radians occurred. Mean values for each fixation method were compared using a paired t-test within each group with statistical significance set at P<.05. Mean yield load, yield stiffness, and failure load for ESP fixation were significantly greater (for axial compression and torsion) than for DCP-TLS fixation. Mean (+/- SD) values for the ESP and DCP-TLS fixation techniques, respectively, in single cycle to failure under axial compression were: yield load 123.9 +/- 8.96 and 28.5 +/- 3.32 kN; stiffness, 13.11 +/- 0.242 and 2.60 +/- 0.17 kN/cm; and failure load, 144.4 +/- 13.6 and 31.4 +/- 3.8 kN. In single cycle to failure under torsion, mean (+/- SD) values for ESP and DCP-TLS, respectively, were: stiffness 2,022 +/- 26.2 and 107.9 +/- 11.1 N m/rad; and failure load: 256.4 +/- 39.2 and 87.1 +/- 11.5 N m. Mean cycles to failure in axial compression of ESP fixation (622,529 +/- 65,468) was significantly greater than DCP-TLS (95,418 +/- 11,037). ESP was superior to an axial 3-hole narrow DCP with 2 abaxial transarticular screws inserted in lag fashion in resisting static overload forces and cyclic fatigue. In vitro results support further evaluation of ESP for PIP joint arthrodesis in horses. Its specific design may provide increased stability without need for external coaptation support.
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OLED lighting devices having multi element light extraction and luminescence conversion layer
Krummacher, Benjamin Claus; Antoniadis, Homer
2010-11-16
An apparatus such as a light source has a multi element light extraction and luminescence conversion layer disposed over a transparent layer of the light source and on the exterior of said light source. The multi-element light extraction and luminescence conversion layer includes a plurality of light extraction elements and a plurality of luminescence conversion elements. The light extraction elements diffuses the light from the light source while luminescence conversion elements absorbs a first spectrum of light from said light source and emits a second spectrum of light.
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Circulation of spoof surface plasmon polaritons: Implementation and verification
NASA Astrophysics Data System (ADS)
Pan, Junwei; Wang, Jiafu; Qiu, Tianshuo; Pang, Yongqiang; Li, Yongfeng; Zhang, Jieqiu; Qu, Shaobo
2018-05-01
In this letter, we are dedicated to implementation and experimental verification of broadband circulator for spoof surface plasmon polaritons (SSPPs). For the ease of fabrication, a circulator operating in X band was firstly designed. The comb-like transmission lines (CL-TLs), a typical SSPP structure, are adopted as the three branches of the Y-junction. To enable broadband coupling of SSPP, a transition section is added on each end of the CL-TLs. Through such a design, the circulator can operate under the sub-wavelength SSPP mode in a broad band. The simulation results show that the insertion loss is less than 0.5dB while the isolation and return loss are higher than 20dB in 9.4-12.0GHz. A prototype was fabricated and measured. The experimental results are consistent with the simulation results and verify the broadband circulation performance in X band.
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Inaba, Tomohiro; Tokumoto, Yuta; Miyazaki, Yusuke; Inoue, Naoyuki; Maseda, Hideaki; Nakajima-Kambe, Toshiaki; Uchiyama, Hiroo
2013-01-01
Succinoyl trehalose lipids (STLs) are promising glycolipid biosurfactants produced from n-alkanes that are secreted by Rhodococcus species bacteria. These compounds not only exhibit unique interfacial properties but also demonstrate versatile biochemical actions. In this study, three novel types of genes involved in the biosynthesis of STLs, including a putative acyl coenzyme A (acyl-CoA) transferase (tlsA), fructose-bisphosphate aldolase (fda), and alkane monooxygenase (alkB), were identified. The predicted functions of these genes indicate that alkane metabolism, sugar synthesis, and the addition of acyl groups are important for the biosynthesis of STLs. Based on these results, we propose a biosynthesis pathway for STLs from alkanes in Rhodococcus sp. strain SD-74. By overexpressing tlsA, we achieved a 2-fold increase in the production of STLs. This study advances our understanding of bacterial glycolipid production in Rhodococcus species. PMID:24038682
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Measuring Love: Sexual Minority Male Youths’ Ideal Romantic Characteristics
Bauermeister, José A.; Johns, Michelle M.; Pingel, Emily; Eisenberg, Anna; Santana, Matt Leslie; Zimmerman, Marc
2011-01-01
Research examining how sexual minorities characterize love within same-sex relationships is scarce. In this study, we examined the validity of Sternberg's Triangular Theory of Love in a sample of sexual minority male youth (N = 447). To test the adequacy of the theory for our population, we examined the psychometric properties of the Triadic Love Scale (TLS) and tested whether the three underlying constructs of the theory (Intimacy, Passion, and Commitment) emerged when participants were asked to consider their ideal relationship with another man. Using confirmatory factor analysis (CFA), we found support for the three-factor solution to characterize sexual minority male youths’ ideal romantic relationship, after minimizing item cross-loadings and adapting the content of the Passion subscale. We discuss the implications of our findings regarding the measurement of the TLS among sexual minority male youth and propose ways to enhance its measurement in future research. PMID:21709758
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Ventura, M; Silva, J R; Andrade, L H C; Scorza Júnior, R P; Lima, S M
2018-01-05
Thermal lens spectroscopy (TLS) in the near-near-infrared region was used to explore the absorptions of overtones and combination bands of sulfentrazone (SFZ) herbicide diluted in methanol. This spectroscopic region was chosen in order to guarantee that only thermal lens effect is noted during the experimental procedure. The results showed that it was possible to detect very low concentrations (~2ng/μL) of SFZ in methanol by determining its thermal diffusivity or the absorption coefficient due to the 3ν(NH)+1δ(CH) combination band. This minimum SFZ concentration is the limit observed by chromatography method. The findings demonstrated that the TLS can be used for precise and accurate assessment of pesticides in ecosystems. Besides, the 3ν(NH)+1δ(CH) combination band at 960nm can be used as a marker for SFZ in methanol. Copyright © 2017 Elsevier B.V. All rights reserved.
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NASA Astrophysics Data System (ADS)
Ventura, M.; Silva, J. R.; Andrade, L. H. C.; Scorza Júnior, R. P.; Lima, S. M.
2018-01-01
Thermal lens spectroscopy (TLS) in the near-near-infrared region was used to explore the absorptions of overtones and combination bands of sulfentrazone (SFZ) herbicide diluted in methanol. This spectroscopic region was chosen in order to guarantee that only thermal lens effect is noted during the experimental procedure. The results showed that it was possible to detect very low concentrations ( 2 ng/μL) of SFZ in methanol by determining its thermal diffusivity or the absorption coefficient due to the 3ν(NH) + 1δ(CH) combination band. This minimum SFZ concentration is the limit observed by chromatography method. The findings demonstrated that the TLS can be used for precise and accurate assessment of pesticides in ecosystems. Besides, the 3ν(NH) + 1δ(CH) combination band at 960 nm can be used as a marker for SFZ in methanol.
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NASA Astrophysics Data System (ADS)
Vázquez-Alonso, Ángel; Aponte, Abdiel; Manassero-Mas, María-Antonia; Montesano, Marisa
2016-07-01
This study examines the effectiveness of a teaching-learning sequence (TLS) to improve the understanding of the influences and interactions between a technology (mining) and society. The aim of the study is also to show the possibility of both teaching and assessing the most innovative issues and aspects of scientific competence and their impact on the understanding of the nature of science. The methodology used a quasi-experimental, pre-post-test design with a control group, with pre-post-test differences as the empirical indicators of improved understanding. Improvements were modest, as the empirical differences (pre-post and experimental-control group) were not large, but the experimental group scored more highly than the control group. The areas that showed improvement were identified. The paper includes the TLS itself and the standardized assessment tools that are functional and transferable to other researchers and teachers.
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The Optimum Dataset method - examples of the application
NASA Astrophysics Data System (ADS)
Błaszczak-Bąk, Wioleta; Sobieraj-Żłobińska, Anna; Wieczorek, Beata
2018-01-01
Data reduction is a procedure to decrease the dataset in order to make their analysis more effective and easier. Reduction of the dataset is an issue that requires proper planning, so after reduction it meets all the user's expectations. Evidently, it is better if the result is an optimal solution in terms of adopted criteria. Within reduction methods, which provide the optimal solution there is the Optimum Dataset method (OptD) proposed by Błaszczak-Bąk (2016). The paper presents the application of this method for different datasets from LiDAR and the possibility of using the method for various purposes of the study. The following reduced datasets were presented: (a) measurement of Sielska street in Olsztyn (Airbrone Laser Scanning data - ALS data), (b) measurement of the bas-relief that is on the building in Gdańsk (Terrestrial Laser Scanning data - TLS data), (c) dataset from Biebrza river measurment (TLS data).
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NASA Astrophysics Data System (ADS)
Tang, Wen Xuan; Zhang, Hao Chi; Liu, Jun Feng; Xu, Jie; Cui, Tie Jun
2017-01-01
Spoof surface plasmon polariton (SPP) has been realized at low frequencies through corrugated metallic structures. As two-dimensional application, the ultrathin SPP transmission lines (TLs) have been proposed with great potentials for microwave compact circuits due to the strong field confinement and enhancement, as well as controllable dispersive properties. In this paper, we examine the radiation loss at small-radius bend, which may cause severe crosstalk in highly-integrated circuits or systems, for the SPP TLs. We theoretically analyze that the SPP TL has essential merit of low radiation loss, and show better performance of SPP TL than the conventional microstrip line through numerical simulations and experiments. Both simulated and measured results demonstrate that the new type of transmission line can efficiently suppress the radiation loss at small-radius bend, and hence reduce the crosstalk in circuits and systems.
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Teaching Air Pollution in an Authentic Context
NASA Astrophysics Data System (ADS)
Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine
2017-04-01
This paper describes a teaching-learning sequence (TLS) about air pollution and the findings resulting from its implementation by pre-service elementary teachers (PET) currently undergraduate students of the Department of Primary Education in the National and Kapodistrian University of Athens, Greece. The TLS focused on the relation of air pollution with wind and topography in local conditions. An authentic context was provided to the students based on daily up-to-date meteorological data via the Internet in order to estimate air pollution. The results are encouraging given that PET can correlate wind and concentration of air pollutants through reading specialized angular diagrams and weather maps, can recognize the correlation of topography in the concentration of air pollutants, and can describe temperature inversion. However, the PET demonstrated clear difficulties in ability of orientation, in wind naming, and in interpretation of symbols on weather map. Finally, the implications on teaching air pollution are discussed.
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Antoniadis,; Homer, Krummacher [Mountain View, CA; Claus, Benjamin [Regensburg, DE
2008-01-22
An apparatus such as a light source has a multi-element light extraction and luminescence conversion layer disposed over a transparent layer of the light source and on the exterior of said light source. The multi-element light extraction and luminescence conversion layer includes a plurality of light extraction elements and a plurality of luminescence conversion elements. The light extraction elements diffuses the light from the light source while luminescence conversion elements absorbs a first spectrum of light from said light source and emits a second spectrum of light.
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Modeling a Shallow Rock Tunnel Using Terrestrial Laser Scanning and Discrete Fracture Networks
NASA Astrophysics Data System (ADS)
Cacciari, Pedro Pazzoto; Futai, Marcos Massao
2017-05-01
Discontinuity mapping and analysis are extremely important for modeling shallow tunnels constructed in fractured rock masses. However, the limited exposure and variability of rock face orientation in tunnels must be taken into account. In this paper, an automatic method is proposed to generate discrete fracture networks (DFNs) using terrestrial laser scanner (TLS) geological mapping and to continuously calculate the volumetric intensities ( P 32) along a tunnel. The number of fractures intersecting rectangular sampling planes with different orientations, fitted in tunnel sections of finite lengths, is used as the program termination criteria to create multiple DFNs and to calculate the mean P 32. All traces and orientations from three discontinuity sets of the Monte Seco tunnel (Vitória Minas Railway) were mapped and the present method applied to obtain the continuous variation in P 32 along the tunnel. A practical approach to creating single and continuous DFNs (for each discontinuity set), considering the P 32 variations, is also presented, and the results are validated by comparing the trace intensities ( P 21) from the TLS mapping and DFNs generated. Three examples of 3DEC block models generated from different sections of the tunnel are shown, including the ground surface and the bedrock topographies. The results indicate that the proposed method is a practical and powerful tool for modeling fractured rock masses of uncovered tunnels. It is also promising for application during tunnel construction when TLS mapping is a daily task (for as-built tunnel controls), and the complete geological mapping (traces and orientations) is available.
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Vertical Optical Scanning with Panoramic Vision for Tree Trunk Reconstruction
Berveglieri, Adilson; Liang, Xinlian; Honkavaara, Eija
2017-01-01
This paper presents a practical application of a technique that uses a vertical optical flow with a fisheye camera to generate dense point clouds from a single planimetric station. Accurate data can be extracted to enable the measurement of tree trunks or branches. The images that are collected with this technique can be oriented in photogrammetric software (using fisheye models) and used to generate dense point clouds, provided that some constraints on the camera positions are adopted. A set of images was captured in a forest plot in the experiments. Weighted geometric constraints were imposed in the photogrammetric software to calculate the image orientation, perform dense image matching, and accurately generate a 3D point cloud. The tree trunks in the scenes were reconstructed and mapped in a local reference system. The accuracy assessment was based on differences between measured and estimated trunk diameters at different heights. Trunk sections from an image-based point cloud were also compared to the corresponding sections that were extracted from a dense terrestrial laser scanning (TLS) point cloud. Cylindrical fitting of the trunk sections allowed the assessment of the accuracies of the trunk geometric shapes in both clouds. The average difference between the cylinders that were fitted to the photogrammetric cloud and those to the TLS cloud was less than 1 cm, which indicates the potential of the proposed technique. The point densities that were obtained with vertical optical scanning were 1/3 less than those that were obtained with TLS. However, the point density can be improved by using higher resolution cameras. PMID:29207468
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Vertical Optical Scanning with Panoramic Vision for Tree Trunk Reconstruction.
Berveglieri, Adilson; Tommaselli, Antonio M G; Liang, Xinlian; Honkavaara, Eija
2017-12-02
This paper presents a practical application of a technique that uses a vertical optical flow with a fisheye camera to generate dense point clouds from a single planimetric station. Accurate data can be extracted to enable the measurement of tree trunks or branches. The images that are collected with this technique can be oriented in photogrammetric software (using fisheye models) and used to generate dense point clouds, provided that some constraints on the camera positions are adopted. A set of images was captured in a forest plot in the experiments. Weighted geometric constraints were imposed in the photogrammetric software to calculate the image orientation, perform dense image matching, and accurately generate a 3D point cloud. The tree trunks in the scenes were reconstructed and mapped in a local reference system. The accuracy assessment was based on differences between measured and estimated trunk diameters at different heights. Trunk sections from an image-based point cloud were also compared to the corresponding sections that were extracted from a dense terrestrial laser scanning (TLS) point cloud. Cylindrical fitting of the trunk sections allowed the assessment of the accuracies of the trunk geometric shapes in both clouds. The average difference between the cylinders that were fitted to the photogrammetric cloud and those to the TLS cloud was less than 1 cm, which indicates the potential of the proposed technique. The point densities that were obtained with vertical optical scanning were 1/3 less than those that were obtained with TLS. However, the point density can be improved by using higher resolution cameras.
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Kozmin, Stanislav G.; Pavlov, Youri I.; Kunkel, Thomas A.; Sage, Evelyne
2003-01-01
Sunlight causes lesions in DNA that if unrepaired and inaccurately replicated by DNA polymerases yield mutations that result in skin cancer in humans. Two enzymes involved in translesion synthesis (TLS) of UV-induced photolesions are DNA polymerase η (Polη) and polymerase ζ (Polζ), encoded by the RAD30A and REV3 genes, respectively. Previous studies have investigated the TLS roles of these polymerases in human and yeast cells irradiated with monochromatic, short wavelength UVC radiation (254 nm). However, less is known about cellular responses to solar radiation, which is of higher and mixed wavelengths (310–1100 nm) and produces a different spectrum of DNA lesions, including Dewar photoproducts and oxidative lesions. Here we report on the comparative cytotoxic and mutagenic effects of simulated sunlight (SSL) and UVC radiation on yeast wild-type, rad30Δ, rev3Δ and rev3Δ rad30Δ strains. The results with SSL support several previous interpretations on the roles of these two polymerases in TLS of photodimers and (6–4) photoproducts derived from studies with UVC. They further suggest that Polη participates in the non-mutagenic bypass of SSL-dependent cytosine-containing Dewar photoproducts and 8-oxoguanine, while Polζ is mainly responsible for the mutagenic bypass of all types of Dewar photoproducts. They also suggest that in the absence of Polζ, Polη contributes to UVC- and SSL-induced mutagenesis, possibly by the bypass of photodimers containing deaminated cytosine. PMID:12888515
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Molecular analysis of mutations in DNA polymerase η in xeroderma pigmentosum-variant patients
Broughton, Bernard C.; Cordonnier, Agnes; Kleijer, Wim J.; Jaspers, Nicolaas G. J.; Fawcett, Heather; Raams, Anja; Garritsen, Victor H.; Stary, Anne; Avril, Marie-Françoise; Boudsocq, François; Masutani, Chikahide; Hanaoka, Fumio; Fuchs, Robert P.; Sarasin, Alain; Lehmann, Alan R.
2002-01-01
Xeroderma pigmentosum variant (XP-V) cells are deficient in their ability to synthesize intact daughter DNA strands after UV irradiation. This deficiency results from mutations in the gene encoding DNA polymerase η, which is required for effecting translesion synthesis (TLS) past UV photoproducts. We have developed a simple cellular procedure to identify XP-V cell strains, and have subsequently analyzed the mutations in 21 patients with XP-V. The 16 mutations that we have identified fall into three categories. Many of them result in severe truncations of the protein and are effectively null alleles. However, we have also identified five missense mutations located in the conserved catalytic domain of the protein. Extracts of cells falling into these two categories are defective in the ability to carry out TLS past sites of DNA damage. Three mutations cause truncations at the C terminus such that the catalytic domains are intact, and extracts from these cells are able to carry out TLS. From our previous work, however, we anticipate that protein in these cells will not be localized in the nucleus nor will it be relocalized into replication foci during DNA replication. The spectrum of both missense and truncating mutations is markedly skewed toward the N-terminal half of the protein. Two of the missense mutations are predicted to affect the interaction with DNA, the others are likely to disrupt the three-dimensional structure of the protein. There is a wide variability in clinical features among patients, which is not obviously related to the site or type of mutation. PMID:11773631
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The analysis of selected orientation methods of architectural objects' scans
NASA Astrophysics Data System (ADS)
Markiewicz, Jakub S.; Kajdewicz, Irmina; Zawieska, Dorota
2015-05-01
The terrestrial laser scanning is commonly used in different areas, inter alia in modelling architectural objects. One of the most important part of TLS data processing is scans registration. It significantly affects the accuracy of generation of high resolution photogrammetric documentation. This process is time consuming, especially in case of a large number of scans. It is mostly based on an automatic detection and a semi-automatic measurement of control points placed on the object. In case of the complicated historical buildings, sometimes it is forbidden to place survey targets on an object or it may be difficult to distribute survey targets in the optimal way. Such problems encourage the search for the new methods of scan registration which enable to eliminate the step of placing survey targets on the object. In this paper the results of target-based registration method are presented The survey targets placed on the walls of historical chambers of the Museum of King Jan III's Palace at Wilanów and on the walls of ruins of the Bishops Castle in Iłża were used for scan orientation. Several variants of orientation were performed, taking into account different placement and different number of survey marks. Afterwards, during next research works, raster images were generated from scans and the SIFT and SURF algorithms for image processing were used to automatically search for corresponding natural points. The case of utilisation of automatically identified points for TLS data orientation was analysed. The results of both methods for TLS data registration were summarized and presented in numerical and graphical forms.
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Measuring and modeling diffuse scattering in protein X-ray crystallography
Van Benschoten, Andrew H.; Liu, Lin; Gonzalez, Ana; Brewster, Aaron S.; Sauter, Nicholas K.; Wall, Michael E.
2016-01-01
X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practices for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation–libration–screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. These results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering. PMID:27035972
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NASA Astrophysics Data System (ADS)
Ferrer, Victor; Errea, Paz; Alonso, Esteban; Gómez-Gutiérrez, Álvaro; Nadal-Romero, Estela
2017-04-01
We used three different methods Terrestrial Laser Scanner (TLS), terrestrial Structure from Motion photogrammetry (SfM) and aerial SfM photogrammetry with an Unmanned Aerial Vehicle (UAV) to analyse geomorphological processes in a semiarid badland landscape. Los Aguarales badlands, located in the Ebro Depression (Spain), occur in the Holocene sediment accumulated in a wide valley infilled with silt and clay. The morphology of Los Aguarales badlands is complex, making the geomorphological interpretation a difficult task. Los Aguarales badlands are characterized by the sequence of incision and piping processes developing an abrupt and complex landscape. Three different representative and small study sites were selected to carry out a detailed analysis of the geomorphological processes. Moreover, the capability of the three methods to produce high resolution point clouds was evaluated. The obtained topographical changes were very low during the first 6 months (March-October 2016). Measured topographical changes, with TLS and terrestrial SfM, were very low, and these values fall within the range of the acquisition error of the devices used (2-6 cm). The preliminary results indicated the possibilities of a multiscale approach using new technologies to study geomorphological and erosion processes, although long-term studies will be necessary to obtain erosion rates in this semiarid badland area. Acknowledgement This research was supported by ESPAS and eTERA 3D projects (CGL2015- 65569-R and CGL2014-54822-R, funded by the MINECO-FEDER). Estela Nadal-Romero is the recipient of a Ramón y Cajal postdoctoral contract (Spanish Ministry of Economy and Competitiveness).
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Experiment on Uav Photogrammetry and Terrestrial Laser Scanning for Ict-Integrated Construction
NASA Astrophysics Data System (ADS)
Takahashi, N.; Wakutsu, R.; Kato, T.; Wakaizumi, T.; Ooishi, T.; Matsuoka, R.
2017-08-01
In the 2016 fiscal year the Ministry of Land, Infrastructure, Transport and Tourism of Japan started a program integrating construction and ICT in earthwork and concrete placing. The new program named "i-Construction" focusing on productivity improvement adopts such new technologies as UAV photogrammetry and TLS. We report a field experiment to investigate whether the procedures of UAV photogrammetry and TLS following the standards for "i-Construction" are feasible or not. In the experiment we measured an embankment of about 80 metres by 160 metres immediately after earthwork was done on the embankment. We used two sets of UAV and camera in the experiment. One is a larger UAV enRoute Zion QC730 and its onboard camera Sony α6000. The other is a smaller UAV DJI Phantom 4 and its dedicated onboard camera. Moreover, we used a terrestrial laser scanner FARO Focus3D X330 based on the phase shift principle. The experiment results indicate that the procedures of UAV photogrammetry using a QC730 with an α6000 and TLS using a Focus3D X330 following the standards for "i-Construction" would be feasible. Furthermore, the experiment results show that UAV photogrammetry using a lower price UAV Phantom 4 was unable to satisfy the accuracy requirement for "i-Construction." The cause of the low accuracy by Phantom 4 is under investigation. We also found that the difference of image resolution on the ground would not have a great influence on the measurement accuracy in UAV photogrammetry.
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NASA Astrophysics Data System (ADS)
Tsunetaka, H.; Hotta, N.; Imaizumi, F.; Hayakawa, Y. S.
2015-12-01
Large sediment movements, such as deep-seated landslides, produce unstable sediment over the long term. Most of the unstable sediment in a mountain torrent is discharged via the development of debris flows through entrainment. Consequently, after a large sediment movement, debris flows have long-term effects on the watershed regime. However, the development of debris flows in mountain torrents is poorly understood, since the topography is more complicated than downstream. We compared temporal changes in topography to examine how topography affects the development of flows. The study site was the Ichino-sawa subwatershed in the Ohya-kuzure landslide, Japan. Unstable sediment has been produced continuously since the landslide occurred in 1707. Several topographic surveys using a terrestrial laser scanner (TLS) and aerial shoots by an unmanned aerial vehicle (UAV) were performed between November 2011 (TLS) or November 2014 (UAV) and August 2015. High-resolution digital elevation models were created from the TLS and UAV results to detect temporal topographic changes. Debris flow occurrences and rainfall were also monitored using interval cameras and rain gauges. Downstream, the deposit depth decreased after the debris flows. Upstream, more complex changes were detected due to surges in the debris flows, which not only induced entrainment, but were also deposited in the valley floor. Furthermore, sediment was supplied from the stream bank during the debris flows. Consequently, several debris flows of different magnitudes were observed, although the rainfall conditions did not differ significantly. The results imply that the magnitude of the debris flows was affected by successive sediment movement resulting from the changing of the topographic conditions.
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NASA Astrophysics Data System (ADS)
Hayakawa, Y. S.; Obanawa, H.
2016-12-01
Due to the weak bedrock and constant wave erosion, sea cliffs along the outer Boso Peninsula, central Japan, have been eroded at ca. 1 m per year for centuries. Modern coastal protection work had significantly reduced the erosion rate, while this became a cause of limited supply of sands along beaches in this area. Among the almost complete protection, a small coastal island, so-called Suzume-Jima Island (70 km southeast of Tokyo), has not been protected, in which we can still observe processes of coastal cliff erosion at the original rate. We have performed multi-temporal (3 times a year), high-resolution (centimeters) topographic measurements of the small island for 3 years, using terrestrial laser scanning (TLS) and structure-from-motion multi-view stereo (SfM-MVS) photogrammetry with an unmanned aerial system (UAS). Landside of the island can be measured by both TLS and UAS, but the seaside could only be captured by UAS, therefore these data are combined to analyze the entire island morphology with a reasonable accuracy. Frequent, spatially variable wave erosion and rockfalls were observed during the measurement period. The dominant wave direction and geologic structure (joint location and orientation) may account for these differences. A severe notch development in the cliff suggests a possible formation of a sea cave through the island in the near future. The measured, short-term results were also compared with the longer-term development of the island shape, obtained by historical aerial photographs for 50 years.
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Donigan, Katherine A.; McLenigan, Mary P.; Yang, Wei; Goodman, Myron F.; Woodgate, Roger
2014-01-01
Accurate DNA synthesis in vivo depends on the ability of DNA polymerases to select dNTPs from a nucleotide pool dominated by NTPs. High fidelity replicative polymerases have evolved to efficiently exclude NTPs while copying long stretches of undamaged DNA. However, to bypass DNA damage, cells utilize specialized low fidelity polymerases to perform translesion DNA synthesis (TLS). Of interest is human DNA polymerase ι (pol ι), which has been implicated in TLS of oxidative and UV-induced lesions. Here, we evaluate the ability of pol ι to incorporate NTPs during DNA synthesis. pol ι incorporates and extends NTPs opposite damaged and undamaged template bases in a template-specific manner. The Y39A “steric gate” pol ι mutant is considerably more active in the presence of Mn2+ compared with Mg2+ and exhibits a marked increase in NTP incorporation and extension, and surprisingly, it also exhibits increased dNTP base selectivity. Our results indicate that a single residue in pol ι is able to discriminate between NTPs and dNTPs during DNA synthesis. Because wild-type pol ι incorporates NTPs in a template-specific manner, certain DNA sequences may be “at risk” for elevated mutagenesis during pol ι-dependent TLS. Molecular modeling indicates that the constricted active site of wild-type pol ι becomes more spacious in the Y39A variant. Therefore, the Y39A substitution not only permits incorporation of ribonucleotides but also causes the enzyme to favor faithful Watson-Crick base pairing over mutagenic configurations. PMID:24532793
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Measuring and modeling diffuse scattering in protein X-ray crystallography
Van Benschoten, Andrew H.; Liu, Lin; Gonzalez, Ana; ...
2016-03-28
X-ray diffraction has the potential to provide rich information about the structural dynamics of macromolecules. To realize this potential, both Bragg scattering, which is currently used to derive macromolecular structures, and diffuse scattering, which reports on correlations in charge density variations, must be measured. Until now, measurement of diffuse scattering from protein crystals has been scarce because of the extra effort of collecting diffuse data. Here, we present 3D measurements of diffuse intensity collected from crystals of the enzymes cyclophilin A and trypsin. The measurements were obtained from the same X-ray diffraction images as the Bragg data, using best practicesmore » for standard data collection. To model the underlying dynamics in a practical way that could be used during structure refinement, we tested translation–libration–screw (TLS), liquid-like motions (LLM), and coarse-grained normal-modes (NM) models of protein motions. The LLM model provides a global picture of motions and was refined against the diffuse data, whereas the TLS and NM models provide more detailed and distinct descriptions of atom displacements, and only used information from the Bragg data. Whereas different TLS groupings yielded similar Bragg intensities, they yielded different diffuse intensities, none of which agreed well with the data. In contrast, both the LLM and NM models agreed substantially with the diffuse data. In conclusion, these results demonstrate a realistic path to increase the number of diffuse datasets available to the wider biosciences community and indicate that dynamics-inspired NM structural models can simultaneously agree with both Bragg and diffuse scattering.« less
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NASA Astrophysics Data System (ADS)
Wright, William J.
Peat soils are known to be a significant source of atmospheric greenhouse gasses. However, the releases of methane and carbon dioxide gasses from peat soils are currently not well understood, particularly since the timing of the releases are poorly constrained. Furthermore, most research work performed on peatlands has been focused on temperate to sub-arctic peatlands, while recent works have suggested that gas production rates from low-latitude peat soils are higher than those from colder climates. The purpose of the work proposed here is to introduce an autonomous Ground Penetrating Radar (GPR) method for investigating the timing of gas releases from peat soils at the lab scale utilizing samples originating from Maine and the Florida Everglades, and at the field scale in a Maine peatland. Geophysical data are supported by direct gas flux measurements using the flux chamber method enhanced by timelapse photography, and terrestrial LiDAR (TLS) monitoring surface deformation.
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Terrestrial Laser Scanning-Based Bridge Structural Condition Assessment : Tech Transfer Summaries
DOT National Transportation Integrated Search
2016-05-01
Problem Statement : While several state departments of transportation (DOTs) have used : terrestrial laser scanning (TLS) in the project planning phase, limited : research has been conducted on employing laser scanners to detect : cracks for bridge c...
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Materials Data on Al7(TlS4)3 (SG:4) by Materials Project
Kristin Persson
2014-11-02
Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
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Materials Data on Al13(TlS7)3 (SG:8) by Materials Project
Kristin Persson
2014-11-02
Computed materials data using density functional theory calculations. These calculations determine the electronic structure of bulk materials by solving approximations to the Schrodinger equation. For more information, see https://materialsproject.org/docs/calculations
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Backscatter absorption gas imaging systems and light sources therefore
Kulp, Thomas Jan [Livermore, CA; Kliner, Dahv A. V. [San Ramon, CA; Sommers, Ricky [Oakley, CA; Goers, Uta-Barbara [Campbell, NY; Armstrong, Karla M [Livermore, CA
2006-12-19
The location of gases that are not visible to the unaided human eye can be determined using tuned light sources that spectroscopically probe the gases and cameras that can provide images corresponding to the absorption of the gases. The present invention is a light source for a backscatter absorption gas imaging (BAGI) system, and a light source incorporating the light source, that can be used to remotely detect and produce images of "invisible" gases. The inventive light source has a light producing element, an optical amplifier, and an optical parametric oscillator to generate wavelength tunable light in the IR. By using a multi-mode light source and an amplifier that operates using 915 nm pump sources, the power consumption of the light source is reduced to a level that can be operated by batteries for long periods of time. In addition, the light source is tunable over the absorption bands of many hydrocarbons, making it useful for detecting hazardous gases.
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Driver circuit for solid state light sources
Palmer, Fred; Denvir, Kerry; Allen, Steven
2016-02-16
A driver circuit for a light source including one or more solid state light sources, a luminaire including the same, and a method of so driving the solid state light sources are provided. The driver circuit includes a rectifier circuit that receives an alternating current (AC) input voltage and provides a rectified AC voltage. The driver circuit also includes a switching converter circuit coupled to the light source. The switching converter circuit provides a direct current (DC) output to the light source in response to the rectified AC voltage. The driver circuit also includes a mixing circuit, coupled to the light source, to switch current through at least one solid state light source of the light source in response to each of a plurality of consecutive half-waves of the rectified AC voltage.
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Position Index for the Matrix Light Source
NASA Astrophysics Data System (ADS)
Takahashi, Hiroshi; Kobayashi, Yoshinori; Onda, Shou; Irikura, Takashi
It is expected that in the future white LEDs will be widely used in practical applications including replacing conventional lighting in offices and homes. The white LED light source of matrix arrangement is also considered in it. On the other hand, although now the unified glare rating (UGR) is widely used for evaluation of the discomfort glare of the interior lighting, UGR is a thing for a uniform light source, and its application to the matrix light sources that have non-uniform luminance has not been considered. The aim of this study is to clarify the position index which is one of element of UGR for the matrix light source. In this case, to apply the position index for a matrix light source to UGR, the concept of the revised position index is invented. As the preliminary experiment, method for measuring the position index was conducted, and as the experiment, position index for the matrix light source was conducted and compared with the uniform light source. The results of the experiments show that the position index is decided by the relative angle between line of sight and light source. It is also found that the matrix light source have larger position index than uniform light source. Furthermore, it is shown that the discomfort glare caused by a matrix light source can be evaluated by applying the revised position index to the UGR.
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Utility and safety of a novel surgical microscope laser light source
Bakhit, Mudathir S.; Suzuki, Kyouichi; Sakuma, Jun; Fujii, Masazumi; Murakami, Yuta; Ito, Yuhei; Sugano, Tetsuo; Saito, Kiyoshi
2018-01-01
Objective Tissue injuries caused by the thermal effects of xenon light microscopes have previously been reported. Due to this, the development of a safe microscope light source became a necessity. A newly developed laser light source is evaluated regarding its effectiveness and safety as an alternative to conventional xenon light source. Methods We developed and tested a new laser light source for surgical microscopes. Four experiments were conducted to compare xenon and laser lights: 1) visual luminance comparison, 2) luminous and light chromaticity measurements, 3) examination and analysis of visual fatigue, and 4) comparison of focal temperature elevation due to light source illumination using porcine muscle samples. Results Results revealed that the laser light could be used at a lower illumination value than the xenon light (p < 0.01). There was no significant difference in visual fatigue status between the laser light and the xenon light. The laser light was superior to the xenon light regarding luminous intensity and color chromaticity. The focal temperature elevation of the muscle samples was significantly higher when irradiated with xenon light in vitro than with laser light (p < 0.01). Conclusion The newly developed laser light source is more efficient and safer than a conventional xenon light source. It lacks harmful ultraviolet waves, has a longer lifespan, a lower focal temperature than that of other light sources, a wide range of brightness and color production, and improved safety for the user’s vision. Further clinical trials are necessary to validate the impact of this new light source on the patient’s outcome and prognosis. PMID:29390016
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[Successful use of C02 laser in septic surgery].
Tóth, T; Benedek, G
1990-12-02
The authors have performed 29 septic operations with a TLS61 CO2 surgical laser with 60 Watt output power. They have gained good experiences with the laser excision of the vascularized, bleeding, inflammated, penetrated by bacteries and infected wounds.
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NASA Technical Reports Server (NTRS)
Bolin, Kenneth (Inventor); Flynn, David (Inventor); Fowski, Walter (Inventor); Miklus, Kenneth (Inventor); Kissh, Frank (Inventor); Abreu, Rene (Inventor)
1993-01-01
A method and apparatus for tracking a light source in a transient event rich environment locks on to a light source incident on a field-of-view 1 of a charge-coupled-device (CCD) array 6, validates the permanence of said light source and transmits data relating to the brilliance and location of said light source if said light source is determined to be permanent.
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Non-contact pumping of light emitters via non-radiative energy transfer
Klimov, Victor I.; Achermann, Marc
2010-01-05
A light emitting device is disclosed including a primary light source having a defined emission photon energy output, and, a light emitting material situated near to said primary light source, said light emitting material having an absorption onset equal to or less in photon energy than the emission photon energy output of the primary light source whereby non-radiative energy transfer from said primary light source to said light emitting material can occur yielding light emission from said light emitting material.
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Mass movements of lowland areas in long range TLS and ALS monitoring
NASA Astrophysics Data System (ADS)
Tyszkowski, Sebastian
2015-04-01
The development of geodynamic processes in lowland areas remains an interesting issue for geomorphology and geology as well as civil engineering. Landslides, slumps, slope washes, rills and gully erosion are considered both geomorphological processes and natural hazards. In order to know precisely their origin and development, it is crucial to determine the rate and direction of their change. Previously such studies used geodesy and photogrammetry but the recent progress in the LiDAR technology allows collecting the data in a wider range and comparable or higher precision than most of geodetic methods. Airborne Laser Scanning (ALS) is also a good tool, but high costs and low frequency of the surveys make it difficult to trace the dynamics of the studied phenomena and processes. Nevertheless, this method enables gathering information from large areas, which is useful for the preliminary identification of the research issues and nomination of the areas for subsequent case studies. It is, however, more common to use Terrestrial Laser Scanning (TLS) for the detailed studies of morphology and its change. This method provides mobility and high accuracy, and enables frequent measurements. The problem in the analysis of many geoprocesses lies in the limited range of this method. This study concerns the Lower Vistula Valley located in northern Poland. It presents the results of measurements of landslides located in the escarpment zone of a big river valley. The object of the studies is mass movements developing within the quaternary deposits on the valley slopes. These processes were monitored in previous years with the traditional survey methods, mainly based on the geodesy field observations (benchmark) as well as the analyses of historical maps and archives. The ALS method used during the study enabled gathering the data on the valley with the density of 8 points per sq m, which provided the background for the consecutive monitoring study. In the surveys a terrestrial scanner Riegl VZ-4000 was applied. This TLS scanner has a very long range of up to 4000 m. The TLS scan positions were located from 0.5 km to 2-3 km from the research objects (depending on the position), on the opposite river bank or valley side. A point cloud of three to four scan positions was made for each landslide. The scans were performed at a maximum resolution of 0.002°. During the merging of each point cloud the Riegl Multi Station Adjustment tool was used for the automatic fine adjustment and alignment. The scan positions and georeferences were registered using the global coordinates with an integrated RTK GPS receiver. After three campaigns based on the collected data from the ALS and TLS scanning and previous filtration a digital terrain model was created. The obtained model was compared in the GIS software in order to assess the changes in the terrain morphology resulting from the geodynamic processes. This study was supported by the Virtual Institute of Integrated Climate and Landscape Evolution (ICLEA) of the Helmholtz Association.
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A new methodology for the diagnostics of architectural elements in historical buildings
NASA Astrophysics Data System (ADS)
Casula, Giuseppe; Fais, Silvana; Cuccuru, Francesco; Ligas, Paola; Giovanna Bianchi, Maria
2016-04-01
A new methodology is presented consisting of a multi-step procedure based on the integrated application of different diagnostic techniques aimed at recognizing altered and unaltered parts of architectural elements of ancient buildings and at identifying zones where structural damage has occurred on their surface. The methodology was tested on a historical building of the monumental compound in Piazza Palazzo in the historical center of the town of Cagliari (Italy). Three types of carbonate building materials have been used historically to construct ancient monuments in the historical center of Cagliari, which in order of increasing hardness are: Pietra Cantone, Tramezzario and Pietra Forte. Our methodology begins with an accurate microscopic examination of petrographic thin sections and scanning electron microscope (SEM) analysis of the above carbonate materials in order to identify their textural characteristics and especially the nature and distribution of their porosity. Other rock properties such as wet and dry bulk density were calculated from saturated and dry mass and volume respectively. In a second step we used a Leica HDS-6200 terrestrial laser scanner (TLS) to 3D model some building of the studied monumental compound (Piazza Palazzo). Surface geometrical anomalies have been modeled for the most interesting architectural elements, such as a Pietra Cantone portal in Late Gothic style inside the Antico Palazzo di Città, a historical building that hosts the civic museum bearing the same name. Since TLS technology is characterized by high productivity but is unable to investigate the inner parts of the studied materials, a third step of our procedure was complemented by several ultrasonic in situ and laboratory tests in the 54kHz - 82kHz range. The ultrasonic parameters, especially longitudinal and transversal velocities, can be measured very accurately and correlated with various material properties with reasonable confidence. This task has two objectives: one is to compare the petrographical and petrophysical rock properties with the elastic-dynamic ones, while the other is to compare TLS geometrical anomalies with the anomalies of the velocity field detected with ultrasonic methodology, which is very effective in detecting altered and/or damaged zones both on the surface and inside the building materials of architectural elements. Analogies between TLS surface geometrical anomalies and the ultrasonic velocity field are evident at the surface and in shallow parts of the investigated architectural elements, as in the mentioned Pietra Cantone ancient portal. This study illustrates how the integrated application of TLS technology and the ultrasonic method contributes in overcoming ambiguities in the interpretation of the individual dataset. Therefore the methodology proposed in this study has proved to be effective in giving useful indications aimed at formulating a recovery and preservation plan for a monumental structure and to monitor its conservation status in time. Acknowledgements: We thank the Cagliari Town Hall and the management of the Civic Museum Antico Palazzo di Città for their kind permission to work on the Museum. This work was supported by Regione Autonoma della Sardegna (Sardinian Autonomous Region), Regional Law 7th August 2007, no. 7, Promotion of scientific research and technological innovation in Sardinia.
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Koller, Heiko; Mayer, Michael; Zenner, Juliane; Resch, Herbert; Niederberger, Alfred; Fierlbeck, Johann; Hitzl, Wolfgang; Acosta, Frank L
2012-07-01
In thoracolumbar deformity surgery, anterior-only approaches are used for reconstruction of anterior column failures. It is generally advised that vertebral body replacements (VBRs) should be preloaded by compression. However, little is known regarding the impact of different techniques for generation of preloads and which surgical principle is best for restoration of lordosis. Therefore, the authors analyzed the effect of different surgical techniques to restore spinal alignment and lordosis as well as the ability to generate axial preloads on VBRs in anterior column reconstructions. The authors performed a laboratory study using 7 fresh-frozen specimens (from T-3 to S-1) to assess the ability for lordosis reconstruction of 5 techniques and their potential for increasing preloads on a modified distractable VBR in a 1-level thoracolumbar corpectomy. The testing protocol was as follows: 1) Radiographs of specimens were obtained. 2) A 1-level corpectomy was performed. 3) In alternating order, lordosis was applied using 1 of the 5 techniques. Then, preloads during insertion and after relaxation using the modified distractable VBR were assessed using a miniature load-cell incorporated in the modified distractable VBR. The modified distractable VBR was inserted into the corpectomy defect after lordosis was applied using 1) a lamina spreader; 2) the modified distractable VBR only; 3) the ArcoFix System (an angular stable plate system enabling in situ reduction); 4) a lordosizer (a customized instrument enabling reduction while replicating the intervertebral center of rotation [COR] according to the COR method); and 5) a lordosizer and top-loading screws ([LZ+TLS], distraction with the lordosizer applied on a 5.5-mm rod linked to 2 top-loading pedicle screws inserted laterally into the vertebra). Changes in the regional kyphosis angle were assessed radiographically using the Cobb method. The bone mineral density of specimens was 0.72 ± 22.6 g/cm(2). The maximum regional kyphosis angle reconstructed among the 5 techniques averaged 9.7°-16.1°, and maximum axial preloads averaged 123.7-179.7 N. Concerning correction, in decreasing order the LZ+TLS, lordosizer, and ArcoFix System outperformed the lamina spreader and modified distractable VBR. The order of median values for insertion peak load, from highest to lowest, were lordosizer, LZ+TLS, and ArcoFix, which outperformed the lamina spreader and modified distractable VBR. In decreasing order, the axial preload was highest with the lordosizer and LZ+TLS, which both outperformed the lamina spreader and the modified distractable VBR. The technique enabling the greatest lordosis achieved the highest preloads. With the ArcoFix System and LZ+TLS, compression loads could be applied and were 247.8 and 190.6 N, respectively, which is significantly higher than the insertion peak load and axial preload (p < 0.05). Including the ability for replication of the COR in instruments designed for anterior column reconstructions, the ability for lordosis restoration of the anterior column and axial preloads can increase, which in turn might foster fusion.
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NASA Astrophysics Data System (ADS)
Mastouri, Raja; Guerin, Antoine; Marchant, Robin; Derron, Marc-Henri; Boulares, Achref; Lazzez, Marzouk; Marillier, François; Jaboyedoff, Michel; Bouaziz, Samir
2015-04-01
It is usually not possible to study in situ fractures and faults of oil reservoirs. Then outcropping reservoir analogues are used instead. For this purpose, Terrestrial Laser Scanning (TLS) has been increasingly used for some years in the petroleum sector. The formations El Garia and Reineche make the Eocene oil reservoir of Eastern Tunisia. The fracturing of these formations has been analyzed on the surface by TLS on a reservoir analogue outcrop and in the depth by 3D seismic data. TLS datasets provide clear information on fracture geometry distribution (spacing and persistence), connectivity and joint orientation. These results were then compared to structures observed in depth with seismic data. The reservoir analogues are the Ousselat cliff (formation El Garia) and the Damous quarry (formation Reineche). Those two sites are made of marine limestone rich in large foraminifers, gastropods and nummulites. Fieldwork, TLS acquisitions and high-resolution GigaPan panoramas were put together to create digital outcrop models. A total of 9 scans at 3 different survey positions were carried out. Firstly, the data processing (cleaning, alignment and georeferencing of the raw point clouds) was carried out using the Polyworks software. Secondly, we draped Gigapixel pictures on the triangular mesh generated with 3DReshaper to produce relief shading. This process produces a photorealistic model that gives a 3D representation of the outcrop. Finally, Coltop3D was used to identify the different sets of discontinuities and to measure their orientations. Furthermore, we used some 3D seismic attribute data to interpret approximately 60 fractures and faults at the top of the Eocene reservoir. The Coltop3D analysis of the Ousselat cliff shows 5 sets of joints and fractures, with different dips and dip directions. They all strike in directions NW-SE, NNE-SSW, NE-SW and ENE-WSW. Using the photorealistic model, we measured approximately 120 fracture spacings ranging from 1.75m to 10m. For Reineche formation outcrop, the structural analog indicates 8 sets of joints and fractures. In Total, we measured 150 fracture spacings. The most part of fracture spacings range from 0.05m to 1m. The results show that many joints of the quarry rocks are interconnected with other small-scale fractures. The comparison between the stereonets obtained by Coltop3D and the seismic attributes indicated that fractures striking NW-SE to NNW-SSE and NE-SW to NNE-SSW are represented in all surveys position. The majority of the faults and fractures observed in TLS data and 3D seismic data can be explained by a combination of extension and shear. Moreover, in this study, we found that there is no correlation between fractures density or fracture distribution and lithology. Finally, the density and the geometry of the fractures have been also interpreted at the outcrop level and in depth, this comparison allows to better characterize the relationship between permeability, secondary porosity and fracture density of the Eocene reservoir.
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DOT National Transportation Integrated Search
2012-03-01
construction and maintenance. Repeat surveys using terrestrial laser scanning (TLS, ground-based LiDAR) enable rapid 3D data acquisition to map, see, analyze, and understand the processes generating such problems. Previously, change detection and ana...
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DOT National Transportation Integrated Search
2012-03-01
Geologic hazards such as coastal erosion, landslides, seismic loading, etc. constantly threaten public highway construction and maintenance. Repeat surveys using terrestrial laser scanning (TLS, ground-based LiDAR) enable rapid 3D data acquisition to...
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DOT National Transportation Integrated Search
2012-03-01
Geologic hazards such as coastal erosion, landslides, seismic loading, etc. constantly threaten public highway construction and maintenance. Repeat surveys using terrestrial laser scanning (TLS, ground-based LiDAR) enable rapid 3D data acquisition to...
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NASA Astrophysics Data System (ADS)
Lague, D.
2014-12-01
High Resolution Topographic (HRT) datasets are predominantly stored and analyzed as 2D raster grids of elevations (i.e., Digital Elevation Models). Raster grid processing is common in GIS software and benefits from a large library of fast algorithms dedicated to geometrical analysis, drainage network computation and topographic change measurement. Yet, all instruments or methods currently generating HRT datasets (e.g., ALS, TLS, SFM, stereo satellite imagery) output natively 3D unstructured point clouds that are (i) non-regularly sampled, (ii) incomplete (e.g., submerged parts of river channels are rarely measured), and (iii) include 3D elements (e.g., vegetation, vertical features such as river banks or cliffs) that cannot be accurately described in a DEM. Interpolating the raw point cloud onto a 2D grid generally results in a loss of position accuracy, spatial resolution and in more or less controlled interpolation. Here I demonstrate how studying earth surface topography and processes directly on native 3D point cloud datasets offers several advantages over raster based methods: point cloud methods preserve the accuracy of the original data, can better handle the evaluation of uncertainty associated to topographic change measurements and are more suitable to study vegetation characteristics and steep features of the landscape. In this presentation, I will illustrate and compare Point Cloud based and Raster based workflows with various examples involving ALS, TLS and SFM for the analysis of bank erosion processes in bedrock and alluvial rivers, rockfall statistics (including rockfall volume estimate directly from point clouds) and the interaction of vegetation/hydraulics and sedimentation in salt marshes. These workflows use 2 recently published algorithms for point cloud classification (CANUPO) and point cloud comparison (M3C2) now implemented in the open source software CloudCompare.
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Boland, Michelle; Miele, Emily M; Delude, Katie
2017-10-07
The purpose was to identify off-ice testing variables that correlate to skating and game performance in Division I collegiate women ice hockey players. Twenty female, forward and defensive players (19.95 ± 1.35 yr) were assessed for weight, height, percent fat mass (%FAT), bone mineral density, predicted one repetition maximum (RM) absolute and relative (REL%) bench press (BP) and hex bar deadlift (HDL), lower body explosive power, anaerobic power, countermovement vertical jump (CMJ), maximum inspiratory pressure (MIP), and on-ice repeated skate sprint (RSS) performance. The on-ice RSS test included 6 timed 85.6 m sprints with participants wearing full hockey equipment; fastest time (FT), average time (AT) and fatigue index (FI) for the first length skate (FLS; 10 m) and total length skate (TLS; 85.6 m) were used for analysis. Game performance was evaluated with game statistics: goals, assists, points, plus-minus, and shots on goal (SOG). Correlation coefficients were used to determine relationships. Percent fat mass was positively correlated (p < 0.05) with FLS-FI and TLS-AT; TLS-FT was negatively correlated with REL%HDL; BP-RM was negatively correlated with FLS-FT and FLS-AT; MIP positively correlated with assists, points, and SOG; FLS-AT negatively correlated with assists. Game performance in women ice hockey players may be enhanced by greater MIP, repeat acceleration ability, and mode-specific training. Faster skating times were associated with lower %FAT. Skating performance in women ice hockey players may be enhanced by improving body composition, anaerobic power, and both lower and upper body strength in off-ice training.
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Trujillo-Ochoa, Jorge L; Corral-Jara, Karla F; Charles-Niño, Claudia L; Panduro, Arturo; Fierro, Nora A
2018-04-01
Bilirubin (BR), a metabolite with increased concentrations in plasma during viral hepatitis, has been recognized as a potential immune-modulator. We recently reported that conjugated BR (CB) augments regulatory T cell (Treg) suppressor activity during acute hepatitis A virus (HAV) infection. However, the mechanisms related to the effects of CB on Treg function in the course of hepatotropic viral diseases have not been elucidated. T cell immunoglobulin domain and mucin domain 3 (TIM-3), via its interactions with galectin-9 (GAL-9), is a receptor associated with enhanced Treg function. Thus, TIM-3 expression may be related to the crosstalk between CB and Tregs during HAV infection. Herein, in vitro treatment with high concentrations of CB upregulated TIM-3 expression on Tregs from healthy donors. CB treatment in vitro did not induce de novo Treg generation, and in vitro stimulation with TGF-β, which shows increased secretion during HAV infection, resulted in a trend toward increased TIM-3 expression on Tregs and CD4 + T lymphocytes (TLs) from healthy donors. Interestingly, an upregulation of TIM-3 expression on CD4 + CD25 + T cells and an increase in the proportion of CD4 + TLs expressing GAL-9 were found in HAV-infected patients with abnormal CB values relative to healthy controls. In addition, a statistically significantly reduction in IL-17F production was observed after treatment of CD4 + TLs from healthy donors with high doses of CB in vitro. In summary, our results suggest that CB might regulate Treg activity via a TIM-3-mediated mechanism, ultimately leading to an anti-inflammatory hepatoprotective effect.
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Wirtz, Markus; Droux, Michel; Hell, Rüdiger
2004-08-01
The synthesis of cysteine is positioned at a decisive stage of assimilatory sulphate reduction, marking the fixation of inorganic sulphide into a carbon skeleton. O-acetylserine (thiol) lyase (OAS-TL) catalyses the reaction of inorganic sulphide with O-acetylserine (OAS). Despite its prominent position in the pathway OAS-TL is generally regarded as a non-limiting enzyme without regulatory function, due to low substrate affinities and semi-constitutive expression patterns. To resolve this apparent contradiction, the kinetic properties of three OAS-TLs from Arabidopsis thaliana, localized in the cytosol (A), plastids (B), and mitochondria (C), were analysed. The recombinant expressed OAS-TLs were purified to apparent homogeneity without any fusion tag to maintain their native forms. The proteins displayed high specific activities of 550-900 micromol min(-1) mg(-1). Using an improved and highly sensitive assay method for cysteine determination, the apparent K(m)(sulphide) was 3-6 microM for OAS-TL A, B, and C and thus 10-100 times lower than previously reported for plant OAS-TLs. K(m)(OAS) was between 310 microM and 690 microM for OAS-TL isoform A, B, and C, whereas the apparent dissociation binding constant for OAS was much lower (K(d)<1 microM OAS). A HPLC method was developed for OAS quantification that revealed fast increases of the cellular OAS concentration in response to sulphate deprivation. The observed fluctuations of intracellular OAS concentrations, combined with the OAS dissociation constant and the catalytic properties of OAS-TL, support the model of a dynamic cysteine synthesis system with regulatory function as can be expected from the position of the reaction in the sulphur assimilation pathway.
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NASA Astrophysics Data System (ADS)
Guarnieri, A.; Fissore, F.; Masiero, A.; Vettore, A.
2017-08-01
It is a matter of fact that 3D visualisation and proper documentation of cultural objects helps to preserve the history and memories of historic buildings, archaeological sites and cultural landscapes, and supports economic growth by stimulating cultural tourism. Preservation, visualisation and recreation of valuable historical and architectural objects and places has always been a serious challenge for specialists in the field. Today, the rapid developments in the fields of close-range photogrammetry, terrestrial laser scanning (TLS) and computer vision (CV) enable to carry out highly accurate 3D models so as to be extremely effective and intuitive for users who have stringent requirements and high expectations. In this note we present the results of the survey and 3D modeling of an ancient gate, Porta Savonarola, located within the remains of the medieval town walls surrounding the historical city center of Padua, Italy. The work has been undertaken within the framework of the project "Walls Multimedia Museum" (WMM) promoted by the local private association "Padua Walls Committee". The goal of the project was to develop a prototype of an "extended" virtual museum, spreaded along most interesting locations of the town walls. The survey of the ancient gate was performed with a Leica C10 and P20 terrestrial laser scanners. Once the acquired scans were properly merged together, a solid model was generated from the global point cloud, and plans and elevations were extracted from it for restoration purposes. A short multimedia video was also created for the "Walls Multimedia Museum", showing both the outer and inner part of the gate. In the paper we will discuss all the steps and challenges addressed to provide the 3D solid model of Porta Savonarola from the TLS data.
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Sharma, Neeraj K; Langberg, Kurt A; Mondal, Ashis K; Elbein, Steven C; Das, Swapan K
2011-02-01
Genome-wide association scans (GWAS) have identified novel single nucleotide polymorphisms (SNPs) that increase T2D susceptibility and indicated the role of nearby genes in T2D pathogenesis. We hypothesized that T2D-associated SNPs act as cis-regulators of nearby genes in human tissues and that expression of these transcripts may correlate with metabolic traits, including insulin sensitivity (S(I)). Association of SNPs with the expression of their nearest transcripts was tested in adipose and muscle from 168 healthy individuals who spanned a broad range of S(I) and body mass index (BMI) and in transformed lymphocytes (TLs). We tested correlations between the expression of these transcripts in adipose and muscle with metabolic traits. Utilizing allelic expression imbalance (AEI) analysis we examined the presence of other cis-regulators for those transcripts in TLs. SNP rs9472138 was significantly (P = 0.037) associated with the expression of VEGFA in TLs while rs6698181 was detected as a cis-regulator for the PKN2 in muscle (P = 0.00027) and adipose (P = 0.018). Significant association was also observed for rs17036101 (P = 0.001) with expression of SYN2 in adipose of Caucasians. Among 19 GWAS-implicated transcripts, expression of VEGFA in adipose was correlated with BMI (r = -0.305) and S(I) (r = 0.230). Although only a minority of the T2D-associated SNPs were validated as cis-eQTLs for nearby transcripts, AEI analysis indicated presence of other cis-regulatory polymorphisms in 54% of these transcripts. Our study suggests that a small subset of GWAS-identified SNPs may increase T2D susceptibility by modulating expression of nearby transcripts in adipose or muscle.
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Chijiwa, Shotaro; Masutani, Chikahide; Hanaoka, Fumio; Iwai, Shigenori; Kuraoka, Isao
2010-03-01
cis-Diamminedichloroplatinum(II) (cisplatin) forms DNA adducts that interfere with replication and transcription. The most common adducts formed in vivo are 1,2-intrastrand d(GpG) cross-links (Pt-GG) and d(ApG) cross-links (Pt-AG), with minor amounts of 1,3-d(GpNpG) cross-links (Pt-GNG), interstrand cross-links and monoadducts. Although the relative contribution of these different adducts to toxicity is not known, literature implicates that Pt-GG and Pt-AG adducts block replication. Thus, nucleotide excision repair (NER), by which platinum adducts are excised, and translesion DNA synthesis (TLS), which permits adduct bypass, are thought to be associated with cisplatin resistance. Recent studies have reported that the clinical benefit from platinum-based chemotherapy is high if tumor cells express low levels of NER factors. To investigate the role of platinum-DNA adducts in mediating tumor cell survival by TLS, we examined whether 1,3-intrastrand d(GpTpG) platinum cross-links (Pt-GTG), which probably exist in NER-negative tumor cells but not in NER-positive tumor cells, are bypassed by the translesion DNA polymerase eta (pol eta), which is known to bypass Pt-GG. We show that pol eta can incorporate the correct deoxycytidine triphosphate opposite the first 3'-cross-linked G of Pt-GTG but cannot insert any nucleotides opposite the second intact T or the third 5'-cross-linked G of the adducts, thereby suggesting that TLS does not facilitate replication past Pt-GTG adducts. Thus, our findings implicate Pt-GNG adducts as mediating the cytotoxicity of platinum-DNA adducts in NER-negative tumors in vivo.
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Polygenic risk score of shorter telomere length and risk of depression and anxiety in women.
Chang, Shun-Chiao; Prescott, Jennifer; De Vivo, Immaculata; Kraft, Peter; Okereke, Olivia I
2018-05-26
Prior studies have reported significant cross-sectional associations between depression or anxiety and shorter telomere lengths, but the temporality of associations is uncertain. Little is known regarding whether shorter telomere length is related to increased risk of developing depression or anxiety. In this study, using the genetic tool of polygenic risk score (PRS), we evaluated the association between genetic predisposition to shorter telomere length and the risks of lifetime clinically significant depression (defined by self-reported clinician/physician diagnosis, antidepressant use, and/or presence of severe depressive symptoms) and of clinically meaningful anxiety symptoms among 17,693 female participants of European ancestry. The weighted PRS of telomere lengths (TLs) combined the dosage of nine alleles that were significantly associated with inter-individual variation in TLs in published genome-wide association studies. Higher score of PRS, corresponding to shorter TL in the literature, was significantly associated with shorter relative TLs (p = 0.008). However, higher PRS was not associated with the lifetime risk of either depression or anxiety. Furthermore, higher PRS was not associated with long-term patterns of depressive symptom trajectories or specifically with later-life onset of depression or anxiety. In summary, this study did not observe a significant association between genetic predisposition to shorter telomere length and risk of depression and anxiety in a large sample of mid-life and older white women. However, these genetic variants jointly account for a limited proportion of interpersonal variation in leukocyte telomere length. Future studies will need to incorporate more genetic variants to improve the accuracy of predicted power, as such data become available. Copyright © 2018 Elsevier Ltd. All rights reserved.
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Inata, Hiroki; Araki, Fujio; Kuribayashi, Yuta; Hamamoto, Yasushi; Nakayama, Shigeki; Sodeoka, Noritaka; Kiriyama, Tetsukazu; Nishizaki, Osamu
2015-09-21
This study developed a dedicated real-time monitoring system to detect intra-fractional head motion in intracranial radiotherapy using pressure sensors. The dedicated real-time monitoring system consists of pressure sensors with a thickness of 0.6 mm and a radius of 9.1 mm, a thermoplastic mask, a vacuum pillow, and a baseplate. The four sensors were positioned at superior-inferior and right-left sides under the occipital area. The sampling rate of pressure sensors was set to 5 Hz. First, we confirmed that the relationship between the force and the displacement of the vacuum pillow follows Hook's law. Next, the spring constant for the vacuum pillow was determined from the relationship between the force given to the vacuum pillow and the displacement of the head, detected by Cyberknife target locating system (TLS) acquisitions in clinical application. Finally, the accuracy of our system was evaluated by using the 2 × 2 confusion matrix. The regression lines between the force, y, and the displacement, x, of the vacuum pillow were given by y = 3.8x, y = 4.4x, and y = 5.0x when the degree of inner pressure was -12 kPa,-20 kPa, and -27 kPa, respectively. The spring constant of the vacuum pillow was 1.6 N mm(-1) from the 6D positioning data of a total of 2999 TLS acquisitions in 19 patients. Head motions of 1 mm, 1.5 mm, and 2 mm were detected in real-time with the accuracies of 67%, 84%, and 89%, respectively. Our system can detect displacement of the head continuously during every interval of TLS with a resolution of 1-2 mm without any radiation exposure.
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Tamura, Kazuo; Kawai, Yasukazu; Kiguchi, Toru; Okamoto, Masataka; Kaneko, Masahiko; Maemondo, Makoto; Gemba, Kenichi; Fujimaki, Katsumichi; Kirito, Keita; Goto, Tetsuya; Fujisaki, Tomoaki; Takeda, Kenji; Nakajima, Akihiro; Ueda, Takanori
2016-10-01
Control of serum uric acid (sUA) levels is very important during chemotherapy in patients with malignant tumors, as the risks of tumor lysis syndrome (TLS) and renal events are increased with increasing levels of sUA. We investigated the efficacy and safety of febuxostat, a potent non-purine xanthine oxidase inhibitor, compared with allopurinol for prevention of hyperuricemia in patients with malignant tumors, including solid tumors, receiving chemotherapy in Japan. An allopurinol-controlled multicenter, open-label, randomized, parallel-group comparative study was carried out. Patients with malignant tumors receiving chemotherapy, who had an intermediate risk of TLS or a high risk of TLS and were not scheduled to be treated with rasburicase, were enrolled and then randomized to febuxostat (60 mg/day) or allopurinol (300 or 200 mg/day). All patients started to take the study drug 24 h before chemotherapy. The primary objective was to confirm the non-inferiority of febuxostat to allopurinol based on the area under the curve (AUC) of sUA for a 6-day treatment period. Forty-nine and 51 patients took febuxostat and allopurinol, respectively. sUA decreased over time after initiation of study treatment. The least squares mean difference of the AUC of sUA between the treatment groups was -33.61 mg h/dL, and the 95 % confidence interval was -70.67 to 3.45, demonstrating the non-inferiority of febuxostat to allopurinol. No differences were noted in safety outcomes between the treatment groups. Febuxostat demonstrated an efficacy and safety similar to allopurinol in patients with malignant tumors receiving chemotherapy. http://www.clinicaltrials.jp ; Identifier: JapicCTI-132398.
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Haldar, Susanta; Kührová, Petra; Banáš, Pavel; Spiwok, Vojtěch; Šponer, Jiří; Hobza, Pavel; Otyepka, Michal
2015-08-11
RNA hairpins capped by 5'-GNRA-3' or 5'-UNCG-3' tetraloops (TLs) are prominent RNA structural motifs. Despite their small size, a wealth of experimental data, and recent progress in theoretical simulations of their structural dynamics and folding, our understanding of the folding and unfolding processes of these small RNA elements is still limited. Theoretical description of the folding and unfolding processes requires robust sampling, which can be achieved by either an exhaustive time scale in standard molecular dynamics simulations or sophisticated enhanced sampling methods, using temperature acceleration or biasing potentials. Here, we study structural dynamics of 5'-GNRA-3' and 5'-UNCG-3' TLs by 15-μs-long standard simulations and a series of well-tempered metadynamics, attempting to accelerate sampling by bias in a few chosen collective variables (CVs). Both methods provide useful insights. The unfolding and refolding mechanisms of the GNRA TL observed by well-tempered metadynamics agree with the (reverse) folding mechanism suggested by recent replica exchange molecular dynamics simulations. The orientation of the glycosidic bond of the GL4 nucleobase is critical for the UUCG TL folding pathway, and our data strongly support the hypothesis that GL4-anti forms a kinetic trap along the folding pathway. Along with giving useful insight, our study also demonstrates that using only a few CVs apparently does not capture the full folding landscape of the RNA TLs. Despite using several sophisticated selections of the CVs, formation of the loop appears to remain a hidden variable, preventing a full convergence of the metadynamics. Finally, our data suggest that the unfolded state might be overstabilized by the force fields used.
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Gold, Peter O.; Cowgill, Eric; Kreylos, Oliver; Gold, Ryan D.
2012-01-01
Three-dimensional (3D) slip vectors recorded by displaced landforms are difficult to constrain across complex fault zones, and the uncertainties associated with such measurements become increasingly challenging to assess as landforms degrade over time. We approach this problem from a remote sensing perspective by using terrestrial laser scanning (TLS) and 3D structural analysis. We have developed an integrated TLS data collection and point-based analysis workflow that incorporates accurate assessments of aleatoric and epistemic uncertainties using experimental surveys, Monte Carlo simulations, and iterative site reconstructions. Our scanning workflow and equipment requirements are optimized for single-operator surveying, and our data analysis process is largely completed using new point-based computing tools in an immersive 3D virtual reality environment. In a case study, we measured slip vector orientations at two sites along the rupture trace of the 1954 Dixie Valley earthquake (central Nevada, United States), yielding measurements that are the first direct constraints on the 3D slip vector for this event. These observations are consistent with a previous approximation of net extension direction for this event. We find that errors introduced by variables in our survey method result in <2.5 cm of variability in components of displacement, and are eclipsed by the 10–60 cm epistemic errors introduced by reconstructing the field sites to their pre-erosion geometries. Although the higher resolution TLS data sets enabled visualization and data interactivity critical for reconstructing the 3D slip vector and for assessing uncertainties, dense topographic constraints alone were not sufficient to significantly narrow the wide (<26°) range of allowable slip vector orientations that resulted from accounting for epistemic uncertainties.
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Trophic models: What do we learn about Celtic Sea and Bay of Biscay ecosystems?
NASA Astrophysics Data System (ADS)
Moullec, Fabien; Gascuel, Didier; Bentorcha, Karim; Guénette, Sylvie; Robert, Marianne
2017-08-01
Trophic models are key tools to go beyond the single-species approaches used in stock assessments to adopt a more holistic view and implement the Ecosystem Approach to Fisheries Management (EAFM). This study aims to: (i) analyse the trophic functioning of the Celtic Sea and the Bay of Biscay, (ii) investigate ecosystem changes over the 1980-2013 period and, (iii) explore the response to management measures at the food web scale. Ecopath models were built for each ecosystem for years 1980 and 2013, and Ecosim models were fitted to time series data of biomass and catches. EcoTroph diagnosis showed that in both ecosystems, fishing pressure focuses on high trophic levels (TLs) and, to a lesser extent, on intermediate TLs. However, the interplay between local environmental conditions, species composition and ecosystem functioning could explain the different responses to fisheries management observed between these two contiguous ecosystems. Indeed, over the study period, the ecosystem's exploitation status has improved in the Bay of Biscay but not in the Celtic Sea. This improvement does not seem to be sufficient to achieve the objectives of an EAFM, as high trophic levels were still overexploited in 2013 and simulations conducted with Ecosim in the Bay of Biscay indicate that at current fishing effort the biomass will not be rebuilt by 2030. The ecosystem's response to a reduction in fishing mortality depends on which trophic levels receive protection. Reducing fishing mortality on pelagic fish, instead of on demersal fish, appears more efficient at maximising catch and total biomass and at conserving both top-predator and intermediate TLs. Such advice-oriented trophic models should be used on a regular basis to monitor the health status of marine food webs and analyse the trade-offs between multiple objectives in an ecosystem-based fisheries management context.
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LATTICE: The Lower ATmosphere-Thermosphere-Ionosphere Coupling Experiment
NASA Astrophysics Data System (ADS)
Mlynczak, M. G.; Yee, J. H.
2017-12-01
We present the Lower Atmosphere-Thermosphere-Ionosphere Coupling Experiment (LATTICE), which is a candidate mission for proposal to a future NASA Announcement of Opportunity. LATTICE will make the first consistent measurements of global kinetic temperature from the tropopause up to at least 160 km, along with global vector winds from 100 to 160 km at all local times. LATTICE thus provides, for the first time, a consistent picture of the coupling of the terrestrial lower atmosphere to the thermosphere-ionosphere system, which is a major scientific goal outlined in the 2012 Heliophysics Decadal Survey. The core instruments on LATTICE are the Terahertz Limb Sounder (TLS) and the Sounding of the Atmosphere using Broadband Emission Radiometry-II (SABER-II) instrument. The TLS instrument measures the 147 µm (2.04 THz) fine structure line of atomic oxygen. From these measurements TLS will provide kinetic temperature, atomic oxygen density, and vector wind from 100 to at least 160 km altitude. SABER-II is an infrared radiometer and is optically identical to the legacy SABER instrument on the current TIMED satellite. SABER-II is half the mass, half the power, and one-third the volume of the legacy instrument, and expects the same radiometric performance. SABER-II will again measure kinetic temperature from 15 to 110 km and will make measurements of key parameters in the thermosphere-ionosphere system including NO+, the green line and red line emissions, as well as continuing legacy measurements of ozone, water vapor, atomic oxygen, and atomic hydrogen in the mesosphere and lower thermosphere. We will describe the LATTICE mission in detail including other potential instruments for diagnosing thermospheric composition and high latitude energy inputs, and for measuring solar ultraviolet irradiance.
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An Emprical Point Error Model for Tls Derived Point Clouds
NASA Astrophysics Data System (ADS)
Ozendi, Mustafa; Akca, Devrim; Topan, Hüseyin
2016-06-01
The random error pattern of point clouds has significant effect on the quality of final 3D model. The magnitude and distribution of random errors should be modelled numerically. This work aims at developing such an anisotropic point error model, specifically for the terrestrial laser scanner (TLS) acquired 3D point clouds. A priori precisions of basic TLS observations, which are the range, horizontal angle and vertical angle, are determined by predefined and practical measurement configurations, performed at real-world test environments. A priori precision of horizontal (𝜎𝜃) and vertical (𝜎𝛼) angles are constant for each point of a data set, and can directly be determined through the repetitive scanning of the same environment. In our practical tests, precisions of the horizontal and vertical angles were found as 𝜎𝜃=±36.6𝑐𝑐 and 𝜎𝛼=±17.8𝑐𝑐, respectively. On the other hand, a priori precision of the range observation (𝜎𝜌) is assumed to be a function of range, incidence angle of the incoming laser ray, and reflectivity of object surface. Hence, it is a variable, and computed for each point individually by employing an empirically developed formula varying as 𝜎𝜌=±2-12 𝑚𝑚 for a FARO Focus X330 laser scanner. This procedure was followed by the computation of error ellipsoids of each point using the law of variance-covariance propagation. The direction and size of the error ellipsoids were computed by the principal components transformation. The usability and feasibility of the model was investigated in real world scenarios. These investigations validated the suitability and practicality of the proposed method.
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High-resolution three-dimensional imaging and analysis of rock falls in Yosemite valley, California
Stock, Gregory M.; Bawden, G.W.; Green, J.K.; Hanson, E.; Downing, G.; Collins, B.D.; Bond, S.; Leslar, M.
2011-01-01
We present quantitative analyses of recent large rock falls in Yosemite Valley, California, using integrated high-resolution imaging techniques. Rock falls commonly occur from the glacially sculpted granitic walls of Yosemite Valley, modifying this iconic landscape but also posing signifi cant potential hazards and risks. Two large rock falls occurred from the cliff beneath Glacier Point in eastern Yosemite Valley on 7 and 8 October 2008, causing minor injuries and damaging structures in a developed area. We used a combination of gigapixel photography, airborne laser scanning (ALS) data, and ground-based terrestrial laser scanning (TLS) data to characterize the rock-fall detachment surface and adjacent cliff area, quantify the rock-fall volume, evaluate the geologic structure that contributed to failure, and assess the likely failure mode. We merged the ALS and TLS data to resolve the complex, vertical to overhanging topography of the Glacier Point area in three dimensions, and integrated these data with gigapixel photographs to fully image the cliff face in high resolution. Three-dimensional analysis of repeat TLS data reveals that the cumulative failure consisted of a near-planar rock slab with a maximum length of 69.0 m, a mean thickness of 2.1 m, a detachment surface area of 2750 m2, and a volume of 5663 ?? 36 m3. Failure occurred along a surfaceparallel, vertically oriented sheeting joint in a clear example of granitic exfoliation. Stress concentration at crack tips likely propagated fractures through the partially attached slab, leading to failure. Our results demonstrate the utility of high-resolution imaging techniques for quantifying far-range (>1 km) rock falls occurring from the largely inaccessible, vertical rock faces of Yosemite Valley, and for providing highly accurate and precise data needed for rock-fall hazard assessment. ?? 2011 Geological Society of America.
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NASA Astrophysics Data System (ADS)
Li, J.; Washington-Allen, R. A.; Okin, G. S.
2010-12-01
Aeolian processes play important roles in microtopography and associated soil-plant interactions in arid and semiarid landscapes. Most previous research has focused on scales larger than plant-interspaces and the dynamics of “fertile islands” associated with individual shrubs. Arid and semiarid ecosystems are notoriously heterogeneous in both microtopography and soil nutrients, and investigations of soil topography and plant-soil interactions at much finer scales (e.g., a few millimeters) are difficult using traditional point based sampling methods. Terrestrial laser scanners (TLS) are novel tools for which techniques can be developed to accurately characterize micro-scale topography with a spot diameter of 4.5 mm, and 2 mm ranging accuracy at 50 kHz. In this study, we employed a portable TLS (a Leica ScanStation 2) to digitally capture the 3-dimensional soil microtopography in a Chihuahuan desert grassland located in southern New Mexico. Soil surface on this site had been exposed to enhanced wind erosion since the spring of 2004. A control plot, located adjacent to the wind erosion plot, was also scanned to provide soil microtopography bench mark. A nearest neighbor interpolation was used on the elevation point clouds to yield bare ground, vegetation, and combined digital surface models for both plots. Additionally, measures of height and foliage diversity, vegetation and bare ground cover, and surface roughness were calculated. The results from this field study clearly demonstrate that TLS can provide insights on changes in microtopography affected by aeolian processes. Moreover, within the known distribution of soil nutrients, the 3D surface model of the soil microtopography provided unprecedented detail on the distribution of “mini” fertile islands associated with topography that were not revealed by studies at plant-interspace scale.
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Bose, Arindam; Pande, Paritosh; Jasti, Vijay P.; Millsap, Amy D.; Hawkins, Edward K.; Rizzo, Carmelo J.; Basu, Ashis K.
2015-01-01
The roles of translesion synthesis (TLS) DNA polymerases in bypassing the C8–2′-deoxyguanosine adduct (dG-C8-IQ) formed by 2-amino-3-methylimidazo[4,5-f]quinoline (IQ), a highly mutagenic and carcinogenic heterocyclic amine found in cooked meats, were investigated. Three plasmid vectors containing the dG-C8-IQ adduct at the G1-, G2- or G3-positions of the NarI site (5′-G1G2CG3CC-3′) were replicated in HEK293T cells. Fifty percent of the progeny from the G3 construct were mutants, largely G→T, compared to 18% and 24% from the G1 and G2 constructs, respectively. Mutation frequency (MF) of dG-C8-IQ was reduced by 38–67% upon siRNA knockdown of pol κ, whereas it was increased by 10–24% in pol η knockdown cells. When pol κ and pol ζ were simultaneously knocked down, MF of the G1 and G3 constructs was reduced from 18% and 50%, respectively, to <3%, whereas it was reduced from 24% to <1% in the G2 construct. In vitro TLS using yeast pol ζ showed that it can extend G3*:A pair more efficiently than G3*:C pair, but it is inefficient at nucleotide incorporation opposite dG-C8-IQ. We conclude that pol κ and pol ζ cooperatively carry out the majority of the error-prone TLS of dG-C8-IQ, whereas pol η is involved primarily in its error-free bypass. PMID:26220181
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DOE Office of Scientific and Technical Information (OSTI.GOV)
Van Aardt, Jan; Romanczyk, Paul; van Leeuwen, Martin
Terrestrial laser scanning (TLS) has emerged as an effective tool for rapid comprehensive measurement of object structure. Registration of TLS data is an important prerequisite to overcome the limitations of occlusion. However, due to the high dissimilarity of point cloud data collected from disparate viewpoints in the forest environment, adequate marker-free registration approaches have not been developed. The majority of studies instead rely on the utilization of artificial tie points (e.g., reflective tooling balls) placed within a scene to aid in coordinate transformation. We present a technique for generating view-invariant feature descriptors that are intrinsic to the point cloud datamore » and, thus, enable blind marker-free registration in forest environments. To overcome the limitation of initial pose estimation, we employ a voting method to blindly determine the optimal pairwise transformation parameters, without an a priori estimate of the initial sensor pose. To provide embedded error metrics, we developed a set theory framework in which a circular transformation is traversed between disjoint tie point subsets. This provides an upper estimate of the Root Mean Square Error (RMSE) confidence associated with each pairwise transformation. Output RMSE errors are commensurate with the RMSE of input tie points locations. Thus, while the mean output RMSE=16.3cm, improved results could be achieved with a more precise laser scanning system. This study 1) quantifies the RMSE of the proposed marker-free registration approach, 2) assesses the validity of embedded confidence metrics using receiver operator characteristic (ROC) curves, and 3) informs optimal sample spacing considerations for TLS data collection in New England forests. Furthermore, while the implications for rapid, accurate, and precise forest inventory are obvious, the conceptual framework outlined here could potentially be extended to built environments.« less
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Renaud, Emilie; Rosselli, Filippo
2013-01-01
To cope with ultraviolet C (UVC)-stalled replication forks and restart DNA synthesis, cells either undergo DNA translesion synthesis (TLS) by specialised DNA polymerases or tolerate the lesions using homologous recombination (HR)-based mechanisms. To gain insight into how cells manage UVC-induced stalled replication forks, we analysed the molecular crosstalk between the TLS DNA polymerases Polη and Rev1, the double-strand break repair (DSB)-associated protein MDC1 and the FANC pathway. We describe three novel functional interactions that occur in response to UVC-induced DNA lesions. First, Polη and Rev1, whose optimal expression and/or relocalisation depend on the FANC core complex, act upstream of FANCD2 and are required for the proper relocalisation of monoubiquitinylated FANCD2 (Ub-FANCD2) to subnuclear foci. Second, during S-phase, Ub-FANCD2 and MDC1 relocalise to UVC-damaged nuclear areas or foci simultaneously but independently of each other. Third, Ub-FANCD2 and MDC1 are independently required for optimal BRCA1 relocalisation. While RPA32 phosphorylation (p-RPA32) and RPA foci formation were reduced in parallel with increasing levels of H2AX phosphorylation and MDC1 foci in UVC-irradiated FANC pathway-depleted cells, MDC1 depletion was associated with increased UVC-induced Ub-FANCD2 and FANCD2 foci as well as p-RPA32 levels and p-RPA32 foci. On the basis of the previous observations, we propose that the FANC pathway participates in the rescue of UVC-stalled replication forks in association with TLS by maintaining the integrity of ssDNA regions and by preserving genome stability and preventing the formation of DSBs, the resolution of which would require the intervention of MDC1. PMID:23365640
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NASA Astrophysics Data System (ADS)
Vasilopoulos, G.; Leyland, J.; Nield, J. M.
2016-12-01
Plants function as large-scale, flexible obstacles that exert additional drag on water flows, affecting local scale turbulence and the structure of the boundary layer. Hence, vegetation plays a significant role controlling surface water flows and modulating geomorphic change. This makes it an important, but often under considered, component when undertaking flood or erosion control actions, or designing river restoration strategies. Vegetative drag varies depending on flow conditions and the associated vegetation structure and temporary reconfiguration of the plant. Whilst several approaches have been developed to describe this relationship, they have been limited due to the difficulty of accurately and precisely characterising the vegetation itself, especially when it is submerged in flow. In practice, vegetative drag is commonly expressed through bulk parameters that are typically derived from lookup tables. Terrestrial Laser Scanning (TLS) has the ability to capture the surface of in situ objects as 3D point clouds, at high resolution (mm), precision and accuracy, even when submerged in water. This allows for the development of workflows capable of quantifying vegetation structure in 3D from dense TLS point cloud data. A physical modelling experiment investigated the impact of a series of structurally variable plants on flow at three different velocities. Acoustic Doppler Velocimetry (ADV) was employed to measure the velocity field and the corresponding fluvial drag of the vegetation was estimated using a bulk roughness function calculated from precise measurements of the water surface slope. Simultaneously, through-water TLS was employed to capture snapshots of plant deformation and distinguish plant structure during flow, using a porosity approach. Although plant type is important, we find a good relationship between plant structure, drag and adjustments of the velocity field.
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Van Aardt, Jan; Romanczyk, Paul; van Leeuwen, Martin; ...
2016-04-04
Terrestrial laser scanning (TLS) has emerged as an effective tool for rapid comprehensive measurement of object structure. Registration of TLS data is an important prerequisite to overcome the limitations of occlusion. However, due to the high dissimilarity of point cloud data collected from disparate viewpoints in the forest environment, adequate marker-free registration approaches have not been developed. The majority of studies instead rely on the utilization of artificial tie points (e.g., reflective tooling balls) placed within a scene to aid in coordinate transformation. We present a technique for generating view-invariant feature descriptors that are intrinsic to the point cloud datamore » and, thus, enable blind marker-free registration in forest environments. To overcome the limitation of initial pose estimation, we employ a voting method to blindly determine the optimal pairwise transformation parameters, without an a priori estimate of the initial sensor pose. To provide embedded error metrics, we developed a set theory framework in which a circular transformation is traversed between disjoint tie point subsets. This provides an upper estimate of the Root Mean Square Error (RMSE) confidence associated with each pairwise transformation. Output RMSE errors are commensurate with the RMSE of input tie points locations. Thus, while the mean output RMSE=16.3cm, improved results could be achieved with a more precise laser scanning system. This study 1) quantifies the RMSE of the proposed marker-free registration approach, 2) assesses the validity of embedded confidence metrics using receiver operator characteristic (ROC) curves, and 3) informs optimal sample spacing considerations for TLS data collection in New England forests. Furthermore, while the implications for rapid, accurate, and precise forest inventory are obvious, the conceptual framework outlined here could potentially be extended to built environments.« less
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75 FR 76428 - Privacy Act of 1974; System of Records
Federal Register 2010, 2011, 2012, 2013, 2014
2010-12-08
..., country, organization, phone, fax, mobile, pager, Defense Switched Network (DSN) phone, other fax, other... to populate and maintain personal data elements in DoD Component networks and systems, such as.../Transport Layer Security (SSL/ TLS) connections, access control lists, file system permissions, intrusion...
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Combination of Tls Point Clouds and 3d Data from Kinect v2 Sensor to Complete Indoor Models
NASA Astrophysics Data System (ADS)
Lachat, E.; Landes, T.; Grussenmeyer, P.
2016-06-01
The combination of data coming from multiple sensors is more and more applied for remote sensing issues (multi-sensor imagery) but also in cultural heritage or robotics, since it often results in increased robustness and accuracy of the final data. In this paper, the reconstruction of building elements such as window frames or door jambs scanned thanks to a low cost 3D sensor (Kinect v2) is presented. Their combination within a global point cloud of an indoor scene acquired with a terrestrial laser scanner (TLS) is considered. If the added elements acquired with the Kinect sensor enable to reach a better level of detail of the final model, an adapted acquisition protocol may also provide several benefits as for example time gain. The paper aims at analyzing whether the two measurement techniques can be complementary in this context. The limitations encountered during the acquisition and reconstruction steps are also investigated.
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Brumbaugh Paradis, Heather; Alter, Debbie; Llerandi, Diane
2017-10-01
Venetoclax (Venclexta™) is a potent, selective, orally available, small-molecule B-cell lymphoma 2 inhibitor that achieves response rates of about 80% and has an acceptable safety profile for patients with relapsed or refractory chronic lymphocytic leukemia (CLL). . The aim was to describe treatment management considerations when caring for patients using venetoclax. . A review was done of safety and management considerations based on current clinical practice and 240 patients with CLL who received venetoclax monotherapy on clinical trials from 2011-2016. . Common adverse events were neutropenia, diarrhea, nausea, anemia, upper respiratory tract infection, thrombocytopenia, and fatigue. Because of rapid tumor reduction with venetoclax, nurses should be aware of the potential for tumor lysis syndrome (TLS) and the need to educate patients on steps to minimize risks, including gradual dose ramp-up, adequate hydration, and use of prophylactic antihyperuricemia agents. Following implementation of these risk-reducing measures, no clinical TLS events were reported in ongoing trials.
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Lampson, Benjamin L.; Davids, Matthew S.
2017-01-01
The BCL-2 family of proteins integrates pro- and anti-apoptotic signals within the cell and is responsible for initiation of caspase-dependent apoptosis. Chronic lymphocytic leukemia (CLL) cells are particularly dependent on the anti-apoptotic protein BCL-2 for their survival, making this an attractive therapeutic target in CLL. Several early efforts to create inhibitors of the anti-apoptotic family members faced significant challenges, but eventually the BCL-2 specific inhibitor venetoclax moved forward in CLL. Overall and complete response rates to venetoclax monotherapy in relapsed, refractory CLL are approximately 80% and 20%, respectively, even in patients with high risk 17p deletion. Toxicities have been manageable and include neutropenia, diarrhea, and nausea. The risk of tumor lysis syndrome (TLS), seen in early experience with the drug, has been mitigated by the use of appropriate TLS risk assessment, prophylaxis, and management. Future studies of venetoclax will focus on combination approaches, predictive biomarker discovery, and mechanisms of resistance. PMID:28116634
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NASA Astrophysics Data System (ADS)
Yu, Fenghai; Zhang, Jianguo; Chen, Xiaomeng; Huang, H. K.
2005-04-01
Next Generation Internet (NGI) technology with new communication protocol IPv6 emerges as a potential solution for low-cost and high-speed networks for image data transmission. IPv6 is designed to solve many of the problems of the current version of IP (known as IPv4) with regard to address depletion, security, autoconfiguration, extensibility, and more. We choose CTN (Central Test Node) DICOM software developed by The Mallinckrodt Institute of Radiology to implement IPv6/IPv4 enabled DICOM communication software on different operating systems (Windows/Linux), and used this DICOM software to evaluate the performance of the IPv6/IPv4 enabled DICOM image communication with different security setting and environments. We compared the security communications of IPsec with SSL/TLS on different TCP/IP protocols (IPv6/IPv4), and find that there are some trade-offs to choose security solution between IPsec and SSL/TLS in the security implementation of IPv6/IPv4 communication networks.
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The multiple roles of TDP-43 in pre-mRNA processing and gene expression regulation.
Buratti, Emanuele; Baralle, Francisco Ernesto
2010-01-01
Heterogeneous ribonucleoproteins (hnRNPs) are multifunctional RNA-binding proteins (RBPs) involved in many cellular processes. They participate in most gene expression pathways, from DNA replication and repair to mRNA translation. Among this class of proteins, TDP-43 (and more recently FUS/TLS) have received considerable attention due to their involvement in several neurodegenerative diseases. This finding has prompted many research groups to focus on the gene expression pathways that are regulated by these proteins. The results have uncovered a considerable complexity of TDP-43 and FUS/TLS functions due to the many independent mechanisms by which they may act to influence various cellular processes (such as DNA transcription, pre-mRNA splicing, mRNA export/import). The aim of this chapter will be to review especially some of the novel functions that have been uncovered, such as role in miRNA synthesis, regulation of transcript levels, and potential autoregulatory mechanisms in order to provide the basis for further investigations.