Pharmacological evidence is consistent with a prominent role of spatial memory in complex navigation

PubMed Central

2016-01-01

The ability to learn about the spatial environment plays an important role in navigation, migration, dispersal, and foraging. However, our understanding of both the role of cognition in the development of navigation strategies and the mechanisms underlying these strategies is limited. We tested the hypothesis that complex navigation is facilitated by spatial memory in a population of Chrysemys picta that navigate with extreme precision (±3.5 m) using specific routes that must be learned prior to age three. We used scopolamine, a muscarinic acetylcholine receptor antagonist, to manipulate the cognitive spatial abilities of free-living turtles during naturally occurring overland movements. Experienced adults treated with scopolamine diverted markedly from their precise navigation routes. Naive juveniles lacking experience (and memory) were not affected by scopolamine, and thereby served as controls for perceptual or non-spatial cognitive processes associated with navigation. Further, neither adult nor juvenile movement was affected by methylscopolamine, a form of scopolamine that does not cross the blood–brain barrier, a control for the peripheral effects of scopolamine. Together, these results are consistent with a role of spatial cognition in complex navigation and highlight a cellular mechanism that might underlie spatial cognition. Overall, our findings expand our understanding of the development of complex cognitive abilities of vertebrates and the neurological mechanisms of navigation. PMID:26865305

Effects of laser beam propagation and saturation on the spatial shape of sodium laser guide stars.

PubMed

Marc, Fabien; Guillet de Chatellus, Hugues; Pique, Jean-Paul

2009-03-30

The possibility to produce diffraction-limited images by large telescopes through Adaptive Optics is closely linked to the precision of measurement of the position of the guide star on the wavefront sensor. In the case of laser guide stars, many parameters can lead to a strong distortion on the shape of the LGS spot. Here we study the influence of both the saturation of the sodium layer excited by different types of lasers, the spatial quality of the laser mode at the ground and the influence of the atmospheric turbulence on the upward propagation of the laser beam. Both shape and intensity of the LGS spot are found to depend strongly on these three effects with important consequences on the precision on the wavefront analysis.

Three-dimensional precise orientation of bilateral auricular trial prosthesis using a facebow for a young adult with Crouzon syndrome.

PubMed

Rathee, Manu; Tamrakar, Amit Kumar; Kundu, Renu; Yunus, Nadeem

2014-08-05

Facial deformity can be debilitating, especially in the psychological and cosmetic aspects. Although surgical correction or replacement of deformed or missing parts is the ideal treatment, prosthetic replacement serves the purpose in case of surgical limitations. Prosthetic rehabilitation of a missing auricle is an acceptable option as it provides better control over the tortuous anatomical shape and shade of the missing portion. Improper spatial orientation of the prosthetic ear on the face can damage the results of even the most aesthetic prosthesis. This case report describes a simple and innovative method for precise spatial orientation of auricular trial prosthesis using a facebow and custom-made adjustable mechanical retention design using stainless steel wire. 2014 BMJ Publishing Group Ltd.

The Focus of Spatial Attention Determines the Number and Precision of Face Representations in Working Memory.

PubMed

Towler, John; Kelly, Maria; Eimer, Martin

2016-06-01

The capacity of visual working memory for faces is extremely limited, but the reasons for these limitations remain unknown. We employed event-related brain potential measures to demonstrate that individual faces have to be focally attended in order to be maintained in working memory, and that attention is allocated to only a single face at a time. When 2 faces have to be memorized simultaneously in a face identity-matching task, the focus of spatial attention during encoding predicts which of these faces can be successfully maintained in working memory and matched to a subsequent test face. We also show that memory representations of attended faces are maintained in a position-dependent fashion. These findings demonstrate that the limited capacity of face memory is directly linked to capacity limits of spatial attention during the encoding and maintenance of individual face representations. We suggest that the capacity and distribution of selective spatial attention is a dynamic resource that constrains the capacity and fidelity of working memory for faces. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Detecting declines in the abundance of a bull trout (Salvelinus confluentus) population: Understanding the accuracy, precision, and costs of our efforts

USGS Publications Warehouse

Al-Chokhachy, R.; Budy, P.; Conner, M.

2009-01-01

Using empirical field data for bull trout (Salvelinus confluentus), we evaluated the trade-off between power and sampling effort-cost using Monte Carlo simulations of commonly collected mark-recapture-resight and count data, and we estimated the power to detect changes in abundance across different time intervals. We also evaluated the effects of monitoring different components of a population and stratification methods on the precision of each method. Our results illustrate substantial variability in the relative precision, cost, and information gained from each approach. While grouping estimates by age or stage class substantially increased the precision of estimates, spatial stratification of sampling units resulted in limited increases in precision. Although mark-resight methods allowed for estimates of abundance versus indices of abundance, our results suggest snorkel surveys may be a more affordable monitoring approach across large spatial scales. Detecting a 25% decline in abundance after 5 years was not possible, regardless of technique (power = 0.80), without high sampling effort (48% of study site). Detecting a 25% decline was possible after 15 years, but still required high sampling efforts. Our results suggest detecting moderate changes in abundance of freshwater salmonids requires considerable resource and temporal commitments and highlight the difficulties of using abundance measures for monitoring bull trout populations.

Emerging Technologies for Assessing Physical Activity Behaviors in Space and Time

PubMed Central

Hurvitz, Philip M.; Moudon, Anne Vernez; Kang, Bumjoon; Saelens, Brian E.; Duncan, Glen E.

2014-01-01

Precise measurement of physical activity is important for health research, providing a better understanding of activity location, type, duration, and intensity. This article describes a novel suite of tools to measure and analyze physical activity behaviors in spatial epidemiology research. We use individual-level, high-resolution, objective data collected in a space-time framework to investigate built and social environment influences on activity. First, we collect data with accelerometers, global positioning system units, and smartphone-based digital travel and photo diaries to overcome many limitations inherent in self-reported data. Behaviors are measured continuously over the full spectrum of environmental exposures in daily life, instead of focusing exclusively on the home neighborhood. Second, data streams are integrated using common timestamps into a single data structure, the “LifeLog.” A graphic interface tool, “LifeLog View,” enables simultaneous visualization of all LifeLog data streams. Finally, we use geographic information system SmartMap rasters to measure spatially continuous environmental variables to capture exposures at the same spatial and temporal scale as in the LifeLog. These technologies enable precise measurement of behaviors in their spatial and temporal settings but also generate very large datasets; we discuss current limitations and promising methods for processing and analyzing such large datasets. Finally, we provide applications of these methods in spatially oriented research, including a natural experiment to evaluate the effects of new transportation infrastructure on activity levels, and a study of neighborhood environmental effects on activity using twins as quasi-causal controls to overcome self-selection and reverse causation problems. In summary, the integrative characteristics of large datasets contained in LifeLogs and SmartMaps hold great promise for advancing spatial epidemiologic research to promote healthy behaviors. PMID:24479113

Assimilating Leaf Area Index Estimates from Remote Sensing into the Simulations of a Cropping Systems Model

USDA-ARS?s Scientific Manuscript database

Spatial extrapolation of cropping systems models for regional crop growth and water use assessment and farm-level precision management has been limited by the vast model input requirements and the model sensitivity to parameter uncertainty. Remote sensing has been proposed as a viable source of spat...

Precisely cyclic sand: self-organization of periodically sheared frictional grains.

PubMed

Royer, John R; Chaikin, Paul M

2015-01-06

The disordered static structure and chaotic dynamics of frictional granular matter has occupied scientists for centuries, yet there are few organizational principles or guiding rules for this highly hysteretic, dissipative material. We show that cyclic shear of a granular material leads to dynamic self-organization into several phases with different spatial and temporal order. Using numerical simulations, we present a phase diagram in strain-friction space that shows chaotic dispersion, crystal formation, vortex patterns, and most unusually a disordered phase in which each particle precisely retraces its unique path. However, the system is not reversible. Rather, the trajectory of each particle, and the entire frictional, many-degrees-of-freedom system, organizes itself into a limit cycle absorbing state. Of particular note is that fact that the cyclic states are spatially disordered, whereas the ordered states are chaotic.

Precisely cyclic sand: Self-organization of periodically sheared frictional grains

PubMed Central

Royer, John R.; Chaikin, Paul M.

2015-01-01

The disordered static structure and chaotic dynamics of frictional granular matter has occupied scientists for centuries, yet there are few organizational principles or guiding rules for this highly hysteretic, dissipative material. We show that cyclic shear of a granular material leads to dynamic self-organization into several phases with different spatial and temporal order. Using numerical simulations, we present a phase diagram in strain–friction space that shows chaotic dispersion, crystal formation, vortex patterns, and most unusually a disordered phase in which each particle precisely retraces its unique path. However, the system is not reversible. Rather, the trajectory of each particle, and the entire frictional, many–degrees-of-freedom system, organizes itself into a limit cycle absorbing state. Of particular note is that fact that the cyclic states are spatially disordered, whereas the ordered states are chaotic. PMID:25538298

Scent Lure Effect on Camera-Trap Based Leopard Density Estimates

PubMed Central

Braczkowski, Alexander Richard; Balme, Guy Andrew; Dickman, Amy; Fattebert, Julien; Johnson, Paul; Dickerson, Tristan; Macdonald, David Whyte; Hunter, Luke

2016-01-01

Density estimates for large carnivores derived from camera surveys often have wide confidence intervals due to low detection rates. Such estimates are of limited value to authorities, which require precise population estimates to inform conservation strategies. Using lures can potentially increase detection, improving the precision of estimates. However, by altering the spatio-temporal patterning of individuals across the camera array, lures may violate closure, a fundamental assumption of capture-recapture. Here, we test the effect of scent lures on the precision and veracity of density estimates derived from camera-trap surveys of a protected African leopard population. We undertook two surveys (a ‘control’ and ‘treatment’ survey) on Phinda Game Reserve, South Africa. Survey design remained consistent except a scent lure was applied at camera-trap stations during the treatment survey. Lures did not affect the maximum movement distances (p = 0.96) or temporal activity of female (p = 0.12) or male leopards (p = 0.79), and the assumption of geographic closure was met for both surveys (p >0.05). The numbers of photographic captures were also similar for control and treatment surveys (p = 0.90). Accordingly, density estimates were comparable between surveys (although estimates derived using non-spatial methods (7.28–9.28 leopards/100km2) were considerably higher than estimates from spatially-explicit methods (3.40–3.65 leopards/100km2). The precision of estimates from the control and treatment surveys, were also comparable and this applied to both non-spatial and spatial methods of estimation. Our findings suggest that at least in the context of leopard research in productive habitats, the use of lures is not warranted. PMID:27050816

A priori evaluation of two-stage cluster sampling for accuracy assessment of large-area land-cover maps

USGS Publications Warehouse

Wickham, J.D.; Stehman, S.V.; Smith, J.H.; Wade, T.G.; Yang, L.

2004-01-01

Two-stage cluster sampling reduces the cost of collecting accuracy assessment reference data by constraining sample elements to fall within a limited number of geographic domains (clusters). However, because classification error is typically positively spatially correlated, within-cluster correlation may reduce the precision of the accuracy estimates. The detailed population information to quantify a priori the effect of within-cluster correlation on precision is typically unavailable. Consequently, a convenient, practical approach to evaluate the likely performance of a two-stage cluster sample is needed. We describe such an a priori evaluation protocol focusing on the spatial distribution of the sample by land-cover class across different cluster sizes and costs of different sampling options, including options not imposing clustering. This protocol also assesses the two-stage design's adequacy for estimating the precision of accuracy estimates for rare land-cover classes. We illustrate the approach using two large-area, regional accuracy assessments from the National Land-Cover Data (NLCD), and describe how the a priorievaluation was used as a decision-making tool when implementing the NLCD design.

Genome Editing of the Blood: Opportunities and Challenges

PubMed Central

Porteus, Matthew H.

2015-01-01

The ability to remove blood cells, including hematopoietic stem cells (HSCs), from a person and then re-transplant them (hematopoietic stem cell transplantation (HSCT) is a well-established treatment paradigm that can be used in both the autologous setting or in the allogeneic setting. Using allogeneic HSCT can cure different genetic diseases of the blood but has significant limitations. An alternative to allogeneic HSCT is to transplant genetically modified HSCs instead. A powerful approach to the precision modification of HSCs is to use genome editing whereby the genome is modified with spatial precision (at an exact location) in the genome and sometimes with nucleotide precision (the exact nucleotide changes are introduced). The progress and challenges of genome editing of blood are discussed. PMID:26029496

Hierarchical Brain Networks Active in Approach and Avoidance Goal Pursuit

PubMed Central

Spielberg, Jeffrey M.; Heller, Wendy; Miller, Gregory A.

2013-01-01

Effective approach/avoidance goal pursuit is critical for attaining long-term health and well-being. Research on the neural correlates of key goal-pursuit processes (e.g., motivation) has long been of interest, with lateralization in prefrontal cortex being a particularly fruitful target of investigation. However, this literature has often been limited by a lack of spatial specificity and has not delineated the precise aspects of approach/avoidance motivation involved. Additionally, the relationships among brain regions (i.e., network connectivity) vital to goal-pursuit remain largely unexplored. Specificity in location, process, and network relationship is vital for moving beyond gross characterizations of function and identifying the precise cortical mechanisms involved in motivation. The present paper integrates research using more spatially specific methodologies (e.g., functional magnetic resonance imaging) with the rich psychological literature on approach/avoidance to propose an integrative network model that takes advantage of the strengths of each of these literatures. PMID:23785328

Hierarchical brain networks active in approach and avoidance goal pursuit.

PubMed

Spielberg, Jeffrey M; Heller, Wendy; Miller, Gregory A

2013-01-01

Effective approach/avoidance goal pursuit is critical for attaining long-term health and well-being. Research on the neural correlates of key goal-pursuit processes (e.g., motivation) has long been of interest, with lateralization in prefrontal cortex being a particularly fruitful target of investigation. However, this literature has often been limited by a lack of spatial specificity and has not delineated the precise aspects of approach/avoidance motivation involved. Additionally, the relationships among brain regions (i.e., network connectivity) vital to goal-pursuit remain largely unexplored. Specificity in location, process, and network relationship is vital for moving beyond gross characterizations of function and identifying the precise cortical mechanisms involved in motivation. The present paper integrates research using more spatially specific methodologies (e.g., functional magnetic resonance imaging) with the rich psychological literature on approach/avoidance to propose an integrative network model that takes advantage of the strengths of each of these literatures.

Dynamic microscale temperature gradient in a gold nanorod solution measured by diffraction-limited nanothermometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Chengmingyue; Gan, Xiaosong; Li, Xiangping

2015-09-21

We quantify the dynamic microscale temperature gradient in a gold nanorod solution using quantum-dot-based microscopic fluorescence nanothermometry. By incorporating CdSe quantum dots into the solution as a nanothermometer, precise temperature mapping with diffraction-limited spatial resolution and sub-degree temperature resolution is achieved. The acquired data on heat generation and dissipation show an excellent agreement with theoretical simulations. This work reveals an effective approach for noninvasive temperature regulation with localized nanoheaters in microfluidic environment.

Spatial variability effects on precision and power of forage yield estimation

USDA-ARS?s Scientific Manuscript database

Spatial analyses of yield trials are important, as they adjust cultivar means for spatial variation and improve the statistical precision of yield estimation. While the relative efficiency of spatial analysis has been frequently reported in several yield trials, its application on long-term forage y...

Precision Viticulture : is it relevant to manage the vineyard according to the within field spatial variability of the environment ?

NASA Astrophysics Data System (ADS)

Tisseyre, Bruno

2015-04-01

For more than 15 years, research projects are conducted in the precision viticulture (PV) area around the world. These research projects have provided new insights into the within-field variability in viticulture. Indeed, access to high spatial resolution data (remote sensing, embedded sensors, etc.) changes the knowledge we have of the fields in viticulture. In particular, the field which was until now considered as a homogeneous management unit, presents actually a high spatial variability in terms of yield, vigour an quality. This knowledge will lead (and is already causing) changes on how to manage the vineyard and the quality of the harvest at the within field scale. From the experimental results obtained in various countries of the world, the goal of the presentation is to provide figures on: - the spatial variability of the main parameters (yield, vigor, quality), and how this variability is organized spatially, - the temporal stability of the observed spatial variability and the potential link with environmental parameters like soil, topography, soil water availability, etc. - information sources available at a high spatial resolution conventionally used in precision agriculture likely to highlight this spatial variability (multi-spectral images, soil electrical conductivity, etc.) and the limitations that these information sources are likely to present in viticulture. Several strategies are currently being developed to take into account the within field variability in viticulture. They are based on the development of specific equipments, sensors, actuators and site specific strategies with the aim of adapting the vineyard operations at the within-field level. These strategies will be presented briefly in two ways : - Site specific operations (fertilization, pruning, thinning, irrigation, etc.) in order to counteract the effects of the environment and to obtain a final product with a controlled and consistent wine quality, - Differential harvesting with the objective to take advantage of the observed spatial variability to produce different quality of wines. These later approach tends to produce very different quality wines which will be blended to control the final quality and/or marketed differently. These applications show that the environment and its spatial variability can be valued with the goal of controlling the final quality of the wine produced. Technologies to characterize the spatial variability of vine fields are currently in rapid evolution. They will significantly impact production methods and management strategies of the vineyard. In its last part, the presentation will summarize the technologies likely to impact the knowledge and the vineyard management either at the field level, at the vineyard level or at the regional level. A brief overview of the needs in terms of information processing will be also performed. A reflection on the difficulties that might limit the adoption of precision viticulture technologies (PV) will be done. Indeed, although very informative, PV entails high costs of information acquisition and data processing. Cost is one of the major obstacles to the dissemination of these tools and services to the majority of wine producers. In this context, the pooling of investments is a choke point to make the VP accessible to the highest number of growers. Thus, to be adopted, the VP will necessarily satisfy the operational requirements at the field level, but also throughout the whole production area (at the regional level). This working scale raises new scientific questions to be addressed.

Precisely Tailored DNA Nanostructures and their Theranostic Applications.

PubMed

Zhu, Bing; Wang, Lihua; Li, Jiang; Fan, Chunhai

2017-12-01

A critical challenge in nanotechnology is the limited precision and controllability of the structural parameters, which brings about concerns in uniformity, reproducibility and performance. Self-assembled DNA nanostructures, as a newly emerged type of nano-biomaterials, possess low-nanometer precision, excellent programmability and addressability. They can precisely arrange various molecules and materials to form spatially ordered complex, resulting in unambiguous physical or chemical properties. Because of these, DNA nanostructures have shown great promise in numerous biomedical theranostic applications. In this account, we briefly review the history and advances on construction of DNA nanoarchitectures and superstructures with accurate structural parameters. We focus on recent progress in exploiting these DNA nanostructures as platforms for quantitative biosensing, intracellular diagnosis, imaging, and smart drug delivery. We also discuss key challenges in practical applications. © 2017 The Chemical Society of Japan & Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

X-Ray Microanalysis and Electron Energy Loss Spectrometry in the Analytical Electron Microscope: Review and Future Directions

NASA Technical Reports Server (NTRS)

Goldstein, J. I.; Williams, D. B.

1992-01-01

This paper reviews and discusses future directions in analytical electron microscopy for microchemical analysis using X-ray and Electron Energy Loss Spectroscopy (EELS). The technique of X-ray microanalysis, using the ratio method and k(sub AB) factors, is outlined. The X-ray absorption correction is the major barrier to the objective of obtaining I% accuracy and precision in analysis. Spatial resolution and Minimum Detectability Limits (MDL) are considered with present limitations of spatial resolution in the 2 to 3 microns range and of MDL in the 0.1 to 0.2 wt. % range when a Field Emission Gun (FEG) system is used. Future directions of X-ray analysis include improvement in X-ray spatial resolution to the I to 2 microns range and MDL as low as 0.01 wt. %. With these improvements the detection of single atoms in the analysis volume will be possible. Other future improvements include the use of clean room techniques for thin specimen preparation, quantification available at the I% accuracy and precision level with light element analysis quantification available at better than the 10% accuracy and precision level, the incorporation of a compact wavelength dispersive spectrometer to improve X-ray spectral resolution, light element analysis and MDL, and instrument improvements including source stability, on-line probe current measurements, stage stability, and computerized stage control. The paper reviews the EELS technique, recognizing that it has been slow to develop and still remains firmly in research laboratories rather than in applications laboratories. Consideration of microanalysis with core-loss edges is given along with a discussion of the limitations such as specimen thickness. Spatial resolution and MDL are considered, recognizing that single atom detection is already possible. Plasmon loss analysis is discussed as well as fine structure analysis. New techniques for energy-loss imaging are also summarized. Future directions in the EELS technique will be the development of new spectrometers and improvements in thin specimen preparation. The microanalysis technique needs to be simplified and software developed so that the EELS technique approaches the relative simplicity of the X-ray technique. Finally, one can expect major improvements in EELS imaging as data storage and processing improvements occur.

Lateral Temperature-Gradient Method for High-Throughput Characterization of Material Processing by Millisecond Laser Annealing.

PubMed

Bell, Robert T; Jacobs, Alan G; Sorg, Victoria C; Jung, Byungki; Hill, Megan O; Treml, Benjamin E; Thompson, Michael O

2016-09-12

A high-throughput method for characterizing the temperature dependence of material properties following microsecond to millisecond thermal annealing, exploiting the temperature gradients created by a lateral gradient laser spike anneal (lgLSA), is presented. Laser scans generate spatial thermal gradients of up to 5 °C/μm with peak temperatures ranging from ambient to in excess of 1400 °C, limited only by laser power and materials thermal limits. Discrete spatial property measurements across the temperature gradient are then equivalent to independent measurements after varying temperature anneals. Accurate temperature calibrations, essential to quantitative analysis, are critical and methods for both peak temperature and spatial/temporal temperature profile characterization are presented. These include absolute temperature calibrations based on melting and thermal decomposition, and time-resolved profiles measured using platinum thermistors. A variety of spatially resolved measurement probes, ranging from point-like continuous profiling to large area sampling, are discussed. Examples from annealing of III-V semiconductors, CdSe quantum dots, low-κ dielectrics, and block copolymers are included to demonstrate the flexibility, high throughput, and precision of this technique.

Tests of the Dynamic Field Theory and The Spatial Precision Hypothesis: Capturing a Qualitative Developmental Transition in Spatial Working Memory

ERIC Educational Resources Information Center

Schutte, Anne R.; Spencer, John P.

2009-01-01

This study tested a dynamic field theory (DFT) of spatial working memory and an associated spatial precision hypothesis (SPH). Between 3 and 6 years of age, there is a qualitative shift in how children use reference axes to remember locations: 3-year-olds' spatial recall responses are biased toward reference axes after short memory delays, whereas…

Spatio-temporal modeling of chronic PM 10 exposure for the Nurses' Health Study

NASA Astrophysics Data System (ADS)

Yanosky, Jeff D.; Paciorek, Christopher J.; Schwartz, Joel; Laden, Francine; Puett, Robin; Suh, Helen H.

2008-06-01

Chronic epidemiological studies of airborne particulate matter (PM) have typically characterized the chronic PM exposures of their study populations using city- or county-wide ambient concentrations, which limit the studies to areas where nearby monitoring data are available and which ignore within-city spatial gradients in ambient PM concentrations. To provide more spatially refined and precise chronic exposure measures, we used a Geographic Information System (GIS)-based spatial smoothing model to predict monthly outdoor PM10 concentrations in the northeastern and midwestern United States. This model included monthly smooth spatial terms and smooth regression terms of GIS-derived and meteorological predictors. Using cross-validation and other pre-specified selection criteria, terms for distance to road by road class, urban land use, block group and county population density, point- and area-source PM10 emissions, elevation, wind speed, and precipitation were found to be important determinants of PM10 concentrations and were included in the final model. Final model performance was strong (cross-validation R2=0.62), with little bias (-0.4 μg m-3) and high precision (6.4 μg m-3). The final model (with monthly spatial terms) performed better than a model with seasonal spatial terms (cross-validation R2=0.54). The addition of GIS-derived and meteorological predictors improved predictive performance over spatial smoothing (cross-validation R2=0.51) or inverse distance weighted interpolation (cross-validation R2=0.29) methods alone and increased the spatial resolution of predictions. The model performed well in both rural and urban areas, across seasons, and across the entire time period. The strong model performance demonstrates its suitability as a means to estimate individual-specific chronic PM10 exposures for large populations.

Geotechnical parameter spatial distribution stochastic analysis based on multi-precision information assimilation

NASA Astrophysics Data System (ADS)

Wang, C.; Rubin, Y.

2014-12-01

Spatial distribution of important geotechnical parameter named compression modulus Es contributes considerably to the understanding of the underlying geological processes and the adequate assessment of the Es mechanics effects for differential settlement of large continuous structure foundation. These analyses should be derived using an assimilating approach that combines in-situ static cone penetration test (CPT) with borehole experiments. To achieve such a task, the Es distribution of stratum of silty clay in region A of China Expo Center (Shanghai) is studied using the Bayesian-maximum entropy method. This method integrates rigorously and efficiently multi-precision of different geotechnical investigations and sources of uncertainty. Single CPT samplings were modeled as a rational probability density curve by maximum entropy theory. Spatial prior multivariate probability density function (PDF) and likelihood PDF of the CPT positions were built by borehole experiments and the potential value of the prediction point, then, preceding numerical integration on the CPT probability density curves, the posterior probability density curve of the prediction point would be calculated by the Bayesian reverse interpolation framework. The results were compared between Gaussian Sequential Stochastic Simulation and Bayesian methods. The differences were also discussed between single CPT samplings of normal distribution and simulated probability density curve based on maximum entropy theory. It is shown that the study of Es spatial distributions can be improved by properly incorporating CPT sampling variation into interpolation process, whereas more informative estimations are generated by considering CPT Uncertainty for the estimation points. Calculation illustrates the significance of stochastic Es characterization in a stratum, and identifies limitations associated with inadequate geostatistical interpolation techniques. This characterization results will provide a multi-precision information assimilation method of other geotechnical parameters.

Tests of the Dynamic Field Theory and the Spatial Precision Hypothesis: Capturing a Qualitative Developmental Transition in Spatial Working Memory

PubMed Central

Schutte, Anne R.; Spencer, John P.

2009-01-01

This study tested a dynamic field theory (DFT) of spatial working memory and an associated spatial precision hypothesis (SPH). Between three and six years of age there is a qualitative shift in how children use reference axes to remember locations: 3-year-olds’ spatial recall responses are biased toward reference axes after short memory delays, whereas 6-year-olds’ responses are biased away from reference axes. According to the DFT and the SPH, quantitative improvements over development in the precision of excitatory and inhibitory working memory processes lead to this qualitative shift. Simulations of the DFT in Experiment 1 predict that improvements in precision should cause the spatial range of targets attracted toward a reference axis to narrow gradually over development with repulsion emerging and gradually increasing until responses to most targets show biases away from the axis. Results from Experiment 2 with 3- to 5-year-olds support these predictions. Simulations of the DFT in Experiment 3 quantitatively fit the empirical results and offer insights into the neural processes underlying this developmental change. PMID:19968430

Depth estimation using a lightfield camera

NASA Astrophysics Data System (ADS)

Roper, Carissa

The latest innovation to camera design has come in the form of the lightfield, or plenoptic, camera that captures 4-D radiance data rather than just the 2-D scene image via microlens arrays. With the spatial and angular light ray data now recorded on the camera sensor, it is feasible to construct algorithms that can estimate depth of field in different portions of a given scene. There are limitations to the precision due to hardware structure and the sheer number of scene variations that can occur. In this thesis, the potential of digital image analysis and spatial filtering to extract depth information is tested on the commercially available plenoptic camera.

Gelatin-based laser direct-write technique for the precise spatial patterning of cells.

PubMed

Schiele, Nathan R; Chrisey, Douglas B; Corr, David T

2011-03-01

Laser direct-writing provides a method to pattern living cells in vitro, to study various cell-cell interactions, and to build cellular constructs. However, the materials typically used may limit its long-term application. By utilizing gelatin coatings on the print ribbon and growth surface, we developed a new approach for laser cell printing that overcomes the limitations of Matrigel™. Gelatin is free of growth factors and extraneous matrix components that may interfere with cellular processes under investigation. Gelatin-based laser direct-write was able to successfully pattern human dermal fibroblasts with high post-transfer viability (91% ± 3%) and no observed double-strand DNA damage. As seen with atomic force microscopy, gelatin offers a unique benefit in that it is present temporarily to allow cell transfer, but melts and is removed with incubation to reveal the desired application-specific growth surface. This provides unobstructed cellular growth after printing. Monitoring cell location after transfer, we show that melting and removal of gelatin does not affect cellular placement; cells maintained registry within 5.6 ± 2.5 μm to the initial pattern. This study demonstrates the effectiveness of gelatin in laser direct-writing to create spatially precise cell patterns with the potential for applications in tissue engineering, stem cell, and cancer research.

Increased dimensionality of cell-cell communication can decrease the precision of gradient sensing

NASA Astrophysics Data System (ADS)

Smith, Tyler; Levchenko, Andre; Nemenman, Ilya; Mugler, Andrew

Gradient sensing is a biological computation that involves comparison of concentrations measured in at least two different locations. As such, the pre- cision of gradient sensing is limited by the intrinsic stochasticity in the com- munication that brings such distributed information to the same location. We have recently analyzed such limitations experimentally and theoretically in multicellular gradient sensing in mammary epithelial cell organoids. For 1d chains of collectively sensing cells, the communication noise puts a se- vere constraint on how the accuracy of gradient sensing increases with the number of cells in the sensor. A question remains as to whether the effect of the noise can be mitigated by the extra spatial averaging allowed in sensing by 2d and 3d cellular organoids. Here we show using computer simulations that, counterintuitively, such spatial averaging decreases gradient sensitiv- ity (while it increases concentration sensitivity). We explain the findings analytically and propose that a recently introduced Regional Excitation - Global Inhibition model of gradient sensing can overcome this limitation and use 2d or 3d spatial averaging to improve the sensing accuracy. Supported by NSF Grant PHY/1410978 and James S. McDonnell Foundation Grant # 220020321.

Assessing the capability of different satellite observing configurations to resolve the distribution of methane emissions at kilometer scales

NASA Astrophysics Data System (ADS)

Turner, Alexander J.; Jacob, Daniel J.; Benmergui, Joshua; Brandman, Jeremy; White, Laurent; Randles, Cynthia A.

2018-06-01

Anthropogenic methane emissions originate from a large number of fine-scale and often transient point sources. Satellite observations of atmospheric methane columns are an attractive approach for monitoring these emissions but have limitations from instrument precision, pixel resolution, and measurement frequency. Dense observations will soon be available in both low-Earth and geostationary orbits, but the extent to which they can provide fine-scale information on methane sources has yet to be explored. Here we present an observation system simulation experiment (OSSE) to assess the capabilities of different satellite observing system configurations. We conduct a 1-week WRF-STILT simulation to generate methane column footprints at 1.3 × 1.3 km2 spatial resolution and hourly temporal resolution over a 290 × 235 km2 domain in the Barnett Shale, a major oil and gas field in Texas with a large number of point sources. We sub-sample these footprints to match the observing characteristics of the recently launched TROPOMI instrument (7 × 7 km2 pixels, 11 ppb precision, daily frequency), the planned GeoCARB instrument (2.7 × 3.0 km2 pixels, 4 ppb precision, nominal twice-daily frequency), and other proposed observing configurations. The information content of the various observing systems is evaluated using the Fisher information matrix and its eigenvalues. We find that a week of TROPOMI observations should provide information on temporally invariant emissions at ˜ 30 km spatial resolution. GeoCARB should provide information available on temporally invariant emissions ˜ 2-7 km spatial resolution depending on sampling frequency (hourly to daily). Improvements to the instrument precision yield greater increases in information content than improved sampling frequency. A precision better than 6 ppb is critical for GeoCARB to achieve fine resolution of emissions. Transient emissions would be missed with either TROPOMI or GeoCARB. An aspirational high-resolution geostationary instrument with 1.3 × 1.3 km2 pixel resolution, hourly return time, and 1 ppb precision would effectively constrain the temporally invariant emissions in the Barnett Shale at the kilometer scale and provide some information on hourly variability of sources.

Calculation of the spatial resolution in two-photon absorption spectroscopy applied to plasma diagnosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia-Lechuga, M.; Laser Processing Group, Instituto de Óptica “Daza de Valdés,” CSIC, 28006-Madrid; Fuentes, L. M.

2014-10-07

We report a detailed characterization of the spatial resolution provided by two-photon absorption spectroscopy suited for plasma diagnosis via the 1S-2S transition of atomic hydrogen for optogalvanic detection and laser induced fluorescence (LIF). A precise knowledge of the spatial resolution is crucial for a correct interpretation of measurements, if the plasma parameters to be analysed undergo strong spatial variations. The present study is based on a novel approach which provides a reliable and realistic determination of the spatial resolution. Measured irradiance distribution of laser beam waists in the overlap volume, provided by a high resolution UV camera, are employed tomore » resolve coupled rate equations accounting for two-photon excitation, fluorescence decay and ionization. The resulting three-dimensional yield distributions reveal in detail the spatial resolution for optogalvanic and LIF detection and related saturation due to depletion. Two-photon absorption profiles broader than the Fourier transform-limited laser bandwidth are also incorporated in the calculations. The approach allows an accurate analysis of the spatial resolution present in recent and future measurements.« less

Fine-grained versus categorical: Pupil size differentiates between strategies for spatial working memory performance.

PubMed

Starc, Martina; Anticevic, Alan; Repovš, Grega

2017-05-01

Pupillometry provides an accessible option to track working memory processes with high temporal resolution. Several studies showed that pupil size increases with the number of items held in working memory; however, no study has explored whether pupil size also reflects the quality of working memory representations. To address this question, we used a spatial working memory task to investigate the relationship of pupil size with spatial precision of responses and indicators of reliance on generalized spatial categories. We asked 30 participants (15 female, aged 19-31) to remember the position of targets presented at various locations along a hidden radial grid. After a delay, participants indicated the remembered location with a high-precision joystick providing a parametric measure of trial-to-trial accuracy. We recorded participants' pupil dilations continuously during task performance. Results showed a significant relation between pupil dilation during preparation/early encoding and the precision of responses, possibly reflecting the attentional resources devoted to memory encoding. In contrast, pupil dilation at late maintenance and response predicted larger shifts of responses toward prototypical locations, possibly reflecting larger reliance on categorical representation. On an intraindividual level, smaller pupil dilations during encoding predicted larger dilations during late maintenance and response. On an interindividual level, participants relying more on categorical representation also produced larger precision errors. The results confirm the link between pupil size and the quality of spatial working memory representation. They suggest compensatory strategies of spatial working memory performance-loss of precise spatial representation likely increases reliance on generalized spatial categories. © 2017 Society for Psychophysiological Research.

Wide-Field Imaging Using Nitrogen Vacancies

NASA Technical Reports Server (NTRS)

Englund, Dirk Robert (Inventor); Trusheim, Matthew Edwin (Inventor)

2017-01-01

Nitrogen vacancies in bulk diamonds and nanodiamonds can be used to sense temperature, pressure, electromagnetic fields, and pH. Unfortunately, conventional sensing techniques use gated detection and confocal imaging, limiting the measurement sensitivity and precluding wide-field imaging. Conversely, the present sensing techniques do not require gated detection or confocal imaging and can therefore be used to image temperature, pressure, electromagnetic fields, and pH over wide fields of view. In some cases, wide-field imaging supports spatial localization of the NVs to precisions at or below the diffraction limit. Moreover, the measurement range can extend over extremely wide dynamic range at very high sensitivity.

Blue light-mediated transcriptional activation and repression of gene expression in bacteria

PubMed Central

Jayaraman, Premkumar; Devarajan, Kavya; Chua, Tze Kwang; Zhang, Hanzhong; Gunawan, Erry; Poh, Chueh Loo

2016-01-01

Light-regulated modules offer unprecedented new ways to control cellular behavior in precise spatial and temporal resolution. The availability of such tools may dramatically accelerate the progression of synthetic biology applications. Nonetheless, current optogenetic toolbox of prokaryotes has potential issues such as lack of rapid and switchable control, less portable, low dynamic expression and limited parts. To address these shortcomings, we have engineered a novel bidirectional promoter system for Escherichia coli that can be induced or repressed rapidly and reversibly using the blue light dependent DNA-binding protein EL222. We demonstrated that by modulating the dosage of light pulses or intensity we could control the level of gene expression precisely. We show that both light-inducible and repressible system can function in parallel with high spatial precision in a single cell and can be switched stably between ON- and OFF-states by repetitive pulses of blue light. In addition, the light-inducible and repressible expression kinetics were quantitatively analysed using a mathematical model. We further apply the system, for the first time, to optogenetically synchronize two receiver cells performing different logic behaviors over time using blue light as a molecular clock signal. Overall, our modular approach layers a transformative platform for next-generation light-controllable synthetic biology systems in prokaryotes. PMID:27353329

Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy

PubMed Central

Valades Cruz, Cesar Augusto; Shaban, Haitham Ahmed; Kress, Alla; Bertaux, Nicolas; Monneret, Serge; Mavrakis, Manos; Savatier, Julien; Brasselet, Sophie

2016-01-01

Essential cellular functions as diverse as genome maintenance and tissue morphogenesis rely on the dynamic organization of filamentous assemblies. For example, the precise structural organization of DNA filaments has profound consequences on all DNA-mediated processes including gene expression, whereas control over the precise spatial arrangement of cytoskeletal protein filaments is key for mechanical force generation driving animal tissue morphogenesis. Polarized fluorescence is currently used to extract structural organization of fluorescently labeled biological filaments by determining the orientation of fluorescent labels, however with a strong drawback: polarized fluorescence imaging is indeed spatially limited by optical diffraction, and is thus unable to discriminate between the intrinsic orientational mobility of the fluorophore labels and the real structural disorder of the labeled biomolecules. Here, we demonstrate that quantitative single-molecule polarized detection in biological filament assemblies allows not only to correct for the rotational flexibility of the label but also to image orientational order of filaments at the nanoscale using superresolution capabilities. The method is based on polarized direct stochastic optical reconstruction microscopy, using dedicated optical scheme and image analysis to determine both molecular localization and orientation with high precision. We apply this method to double-stranded DNA in vitro and microtubules and actin stress fibers in whole cells. PMID:26831082

Working memory resources are shared across sensory modalities.

PubMed

Salmela, V R; Moisala, M; Alho, K

2014-10-01

A common assumption in the working memory literature is that the visual and auditory modalities have separate and independent memory stores. Recent evidence on visual working memory has suggested that resources are shared between representations, and that the precision of representations sets the limit for memory performance. We tested whether memory resources are also shared across sensory modalities. Memory precision for two visual (spatial frequency and orientation) and two auditory (pitch and tone duration) features was measured separately for each feature and for all possible feature combinations. Thus, only the memory load was varied, from one to four features, while keeping the stimuli similar. In Experiment 1, two gratings and two tones-both containing two varying features-were presented simultaneously. In Experiment 2, two gratings and two tones-each containing only one varying feature-were presented sequentially. The memory precision (delayed discrimination threshold) for a single feature was close to the perceptual threshold. However, as the number of features to be remembered was increased, the discrimination thresholds increased more than twofold. Importantly, the decrease in memory precision did not depend on the modality of the other feature(s), or on whether the features were in the same or in separate objects. Hence, simultaneously storing one visual and one auditory feature had an effect on memory precision equal to those of simultaneously storing two visual or two auditory features. The results show that working memory is limited by the precision of the stored representations, and that working memory can be described as a resource pool that is shared across modalities.

Spatial distribution, sampling precision and survey design optimisation with non-normal variables: The case of anchovy (Engraulis encrasicolus) recruitment in Spanish Mediterranean waters

NASA Astrophysics Data System (ADS)

Tugores, M. Pilar; Iglesias, Magdalena; Oñate, Dolores; Miquel, Joan

2016-02-01

In the Mediterranean Sea, the European anchovy (Engraulis encrasicolus) displays a key role in ecological and economical terms. Ensuring stock sustainability requires the provision of crucial information, such as species spatial distribution or unbiased abundance and precision estimates, so that management strategies can be defined (e.g. fishing quotas, temporal closure areas or marine protected areas MPA). Furthermore, the estimation of the precision of global abundance at different sampling intensities can be used for survey design optimisation. Geostatistics provide a priori unbiased estimations of the spatial structure, global abundance and precision for autocorrelated data. However, their application to non-Gaussian data introduces difficulties in the analysis in conjunction with low robustness or unbiasedness. The present study applied intrinsic geostatistics in two dimensions in order to (i) analyse the spatial distribution of anchovy in Spanish Western Mediterranean waters during the species' recruitment season, (ii) produce distribution maps, (iii) estimate global abundance and its precision, (iv) analyse the effect of changing the sampling intensity on the precision of global abundance estimates and, (v) evaluate the effects of several methodological options on the robustness of all the analysed parameters. The results suggested that while the spatial structure was usually non-robust to the tested methodological options when working with the original dataset, it became more robust for the transformed datasets (especially for the log-backtransformed dataset). The global abundance was always highly robust and the global precision was highly or moderately robust to most of the methodological options, except for data transformation.

An automatic 2D–3D image matching method for reproducing spatial knee joint positions using single or dual fluoroscopic images

PubMed Central

Zhu, Zhonglin; Li, Guoan

2013-01-01

Fluoroscopic image technique, using either a single image or dual images, has been widely applied to measure in vivo human knee joint kinematics. However, few studies have compared the advantages of using single and dual fluoroscopic images. Furthermore, due to the size limitation of the image intensifiers, it is possible that only a portion of the knee joint could be captured by the fluoroscopy during dynamic knee joint motion. In this paper, we presented a systematic evaluation of an automatic 2D–3D image matching method in reproducing spatial knee joint positions using either single or dual fluoroscopic image techniques. The data indicated that for the femur and tibia, their spatial positions could be determined with an accuracy and precision less than 0.2 mm in translation and less than 0.4° in orientation when dual fluoroscopic images were used. Using single fluoroscopic images, the method could produce satisfactory accuracy in joint positions in the imaging plane (average up to 0.5 mm in translation and 1.3° in rotation), but large variations along the out-plane direction (in average up to 4.0 mm in translation and 2.28 in rotation). The precision of using single fluoroscopic images to determine the actual knee positions was worse than its accuracy obtained. The data also indicated that when using dual fluoroscopic image technique, if the knee joint outlines in one image were incomplete by 80%, the algorithm could still reproduce the joint positions with high precisions. PMID:21806411

Transparent, conformable, active multielectrode array using organic electrochemical transistors.

PubMed

Lee, Wonryung; Kim, Dongmin; Matsuhisa, Naoji; Nagase, Masae; Sekino, Masaki; Malliaras, George G; Yokota, Tomoyuki; Someya, Takao

2017-10-03

Mechanically flexible active multielectrode arrays (MEA) have been developed for local signal amplification and high spatial resolution. However, their opaqueness limited optical observation and light stimulation during use. Here, we show a transparent, ultraflexible, and active MEA, which consists of transparent organic electrochemical transistors (OECTs) and transparent Au grid wirings. The transparent OECT is made of Au grid electrodes and has shown comparable performance with OECTs with nontransparent electrodes/wirings. The transparent active MEA realizes the spatial mapping of electrocorticogram electrical signals from an optogenetic rat with 1-mm spacing and shows lower light artifacts than noise level. Our active MEA would open up the possibility of precise investigation of a neural network system with direct light stimulation.

The Effect of Viewing Eccentricity on Enumeration

PubMed Central

Palomares, Melanie; Smith, Paul R.; Pitts, Carole Holley; Carter, Breana M.

2011-01-01

Visual acuity and contrast sensitivity progressively diminish with increasing viewing eccentricity. Here we evaluated how visual enumeration is affected by visual eccentricity, and whether subitizing capacity, the accurate enumeration of a small number (∼3) of items, decreases with more eccentric viewing. Participants enumerated gratings whose (1) stimulus size was constant across eccentricity, and (2) whose stimulus size scaled by a cortical magnification factor across eccentricity. While we found that enumeration accuracy and precision decreased with increasing eccentricity, cortical magnification scaling of size neutralized the deleterious effects of increasing eccentricity. We found that size scaling did not affect subitizing capacities, which were nearly constant across all eccentricities. We also found that size scaling modulated the variation coefficients, a normalized metric of enumeration precision, defined as the standard deviation divided by the mean response. Our results show that the inaccuracy and imprecision associated with increasing viewing eccentricity is due to limitations in spatial resolution. Moreover, our results also support the notion that the precise number system is restricted to small numerosities (represented by the subitizing limit), while the approximate number system extends across both small and large numerosities (indexed by variation coefficients) at large eccentricities. PMID:21695212

The effect of viewing eccentricity on enumeration.

PubMed

Palomares, Melanie; Smith, Paul R; Pitts, Carole Holley; Carter, Breana M

2011-01-01

Visual acuity and contrast sensitivity progressively diminish with increasing viewing eccentricity. Here we evaluated how visual enumeration is affected by visual eccentricity, and whether subitizing capacity, the accurate enumeration of a small number (∼3) of items, decreases with more eccentric viewing. Participants enumerated gratings whose (1) stimulus size was constant across eccentricity, and (2) whose stimulus size scaled by a cortical magnification factor across eccentricity. While we found that enumeration accuracy and precision decreased with increasing eccentricity, cortical magnification scaling of size neutralized the deleterious effects of increasing eccentricity. We found that size scaling did not affect subitizing capacities, which were nearly constant across all eccentricities. We also found that size scaling modulated the variation coefficients, a normalized metric of enumeration precision, defined as the standard deviation divided by the mean response. Our results show that the inaccuracy and imprecision associated with increasing viewing eccentricity is due to limitations in spatial resolution. Moreover, our results also support the notion that the precise number system is restricted to small numerosities (represented by the subitizing limit), while the approximate number system extends across both small and large numerosities (indexed by variation coefficients) at large eccentricities.

Harvester-based sensing system for cotton fiber-quality mapping

USDA-ARS?s Scientific Manuscript database

Precision agriculture in cotton production attempts to maximize profitability by exploiting information on field spatial variability to optimize the fiber yield and quality. For precision agriculture to be economically viable, collection of spatial variability data within a field must be automated a...

Quantum-enhanced sensing from hyperentanglement

NASA Astrophysics Data System (ADS)

Walborn, S. P.; Pimentel, A. H.; Davidovich, L.; de Matos Filho, R. L.

2018-01-01

Hyperentanglement—simultaneous entanglement between multiple degrees of freedom of two or more systems—has been used to enhance quantum information tasks such as quantum communication and photonic quantum computing. Here we show that hyperentanglement can lead to increased quantum advantage in metrology, with contributions from the entanglement in each degree of freedom, allowing for Heisenberg scaling in the precision of parameter estimation. Our experiment employs photon pairs entangled in polarization and spatial degrees of freedom to estimate a small tilt angle of a mirror. Precision limits beyond shot noise are saturated through a simple binary measurement of the polarization state. The dynamics considered here have broad applicability, implying that similar strategies based on hyperentanglement can offer improvement in a wide variety of physical scenarios and metrological tasks.

Maximizing the Biochemical Resolving Power of Fluorescence Microscopy

PubMed Central

Esposito, Alessandro; Popleteeva, Marina; Venkitaraman, Ashok R.

2013-01-01

Most recent advances in fluorescence microscopy have focused on achieving spatial resolutions below the diffraction limit. However, the inherent capability of fluorescence microscopy to non-invasively resolve different biochemical or physical environments in biological samples has not yet been formally described, because an adequate and general theoretical framework is lacking. Here, we develop a mathematical characterization of the biochemical resolution in fluorescence detection with Fisher information analysis. To improve the precision and the resolution of quantitative imaging methods, we demonstrate strategies for the optimization of fluorescence lifetime, fluorescence anisotropy and hyperspectral detection, as well as different multi-dimensional techniques. We describe optimized imaging protocols, provide optimization algorithms and describe precision and resolving power in biochemical imaging thanks to the analysis of the general properties of Fisher information in fluorescence detection. These strategies enable the optimal use of the information content available within the limited photon-budget typically available in fluorescence microscopy. This theoretical foundation leads to a generalized strategy for the optimization of multi-dimensional optical detection, and demonstrates how the parallel detection of all properties of fluorescence can maximize the biochemical resolving power of fluorescence microscopy, an approach we term Hyper Dimensional Imaging Microscopy (HDIM). Our work provides a theoretical framework for the description of the biochemical resolution in fluorescence microscopy, irrespective of spatial resolution, and for the development of a new class of microscopes that exploit multi-parametric detection systems. PMID:24204821

Gelatin-Based Laser Direct-Write Technique for the Precise Spatial Patterning of Cells

PubMed Central

Schiele, Nathan R.; Chrisey, Douglas B.

2011-01-01

Laser direct-writing provides a method to pattern living cells in vitro, to study various cell–cell interactions, and to build cellular constructs. However, the materials typically used may limit its long-term application. By utilizing gelatin coatings on the print ribbon and growth surface, we developed a new approach for laser cell printing that overcomes the limitations of Matrigel™. Gelatin is free of growth factors and extraneous matrix components that may interfere with cellular processes under investigation. Gelatin-based laser direct-write was able to successfully pattern human dermal fibroblasts with high post-transfer viability (91% ± 3%) and no observed double-strand DNA damage. As seen with atomic force microscopy, gelatin offers a unique benefit in that it is present temporarily to allow cell transfer, but melts and is removed with incubation to reveal the desired application-specific growth surface. This provides unobstructed cellular growth after printing. Monitoring cell location after transfer, we show that melting and removal of gelatin does not affect cellular placement; cells maintained registry within 5.6 ± 2.5 μm to the initial pattern. This study demonstrates the effectiveness of gelatin in laser direct-writing to create spatially precise cell patterns with the potential for applications in tissue engineering, stem cell, and cancer research. PMID:20849381

Application of Unmanned Aerial Systems in Spatial Downscaling of Landsat VIR imageries of Agricultural Fields

NASA Astrophysics Data System (ADS)

Torres, A.; Hassan Esfahani, L.; Ebtehaj, A.; McKee, M.

2016-12-01

While coarse space-time resolution of satellite observations in visible to near infrared (VIR) is a serious limiting factor for applications in precision agriculture, high resolution remotes sensing observation by the Unmanned Aerial Systems (UAS) systems are also site-specific and still practically restrictive for widespread applications in precision agriculture. We present a modern spatial downscaling approach that relies on new sparse approximation techniques. The downscaling approach learns from a large set of coincident low- and high-resolution satellite and UAS observations to effectively downscale the satellite imageries in VIR bands. We focus on field experiments using the AggieAirTM platform and Landsat 7 ETM+ and Landsat 8 OLI observations obtained in an intensive field campaign in 2013 over an agriculture field in Scipio, Utah. The results show that the downscaling methods can effectively increase the resolution of Landsat VIR imageries by the order of 2 to 4 from 30 m to 15 and 7.5 m, respectively. Specifically, on average, the downscaling method reduces the root mean squared errors up to 26%, considering bias corrected AggieAir imageries as the reference.

A new global anthropogenic heat estimation based on high-resolution nighttime light data

PubMed Central

Yang, Wangming; Luan, Yibo; Liu, Xiaolei; Yu, Xiaoyong; Miao, Lijuan; Cui, Xuefeng

2017-01-01

Consumption of fossil fuel resources leads to global warming and climate change. Apart from the negative impact of greenhouse gases on the climate, the increasing emission of anthropogenic heat from energy consumption also brings significant impacts on urban ecosystems and the surface energy balance. The objective of this work is to develop a new method of estimating the global anthropogenic heat budget and validate it on the global scale with a high precision and resolution dataset. A statistical algorithm was applied to estimate the annual mean anthropogenic heat (AH-DMSP) from 1992 to 2010 at 1×1 km2 spatial resolution for the entire planet. AH-DMSP was validated for both provincial and city scales, and results indicate that our dataset performs well at both scales. Compared with other global anthropogenic heat datasets, the AH-DMSP has a higher precision and finer spatial distribution. Although there are some limitations, the AH-DMSP could provide reliable, multi-scale anthropogenic heat information, which could be used for further research on regional or global climate change and urban ecosystems. PMID:28829436

Monthly Strontium/Calcium oscillations in symbiotic coral aragonite: Biological effects limiting the precision of the paleotemperature proxy

USGS Publications Warehouse

Meibom, A.; Stage, M.; Wooden, J.; Constantz, B.R.; Dunbar, R.B.; Owen, A.; Grumet, N.; Bacon, C.R.; Chamberlain, C.P.

2003-01-01

In thermodynamic equilibrium with sea water the Sr/Ca ratio of aragonite varies predictably with temperature and the Sr/Ca ratio in coral have thus become a frequently used proxy for past Sea Surface Temperature (SST). However, biological effects can offset the Sr/Ca ratio from its equilibrium value. We report high spatial resolution ion microprobe analyses of well defined skeletal elements in the reef-building coral Porites lutea that reveal distinct monthly oscillations in the Sr/Ca ratio, with an amplitude in excess of ten percent. The extreme Sr/Ca variations, which we propose result from metabolic changes synchronous with the lunar cycle, introduce variability in Sr/Ca measurements based on conventional sampling techniques well beyond the analytical precision. These variations can limit the accuracy of Sr/Ca paleothermometry by conventional sampling techniques to about 2??C. Our results may help explain the notorious difficulties involved in obtaining an accurate and consistent calibration of the Sr/Ca vs. SST relationship.

Single-spin stochastic optical reconstruction microscopy

PubMed Central

Pfender, Matthias; Aslam, Nabeel; Waldherr, Gerald; Neumann, Philipp; Wrachtrup, Jörg

2014-01-01

We experimentally demonstrate precision addressing of single-quantum emitters by combined optical microscopy and spin resonance techniques. To this end, we use nitrogen vacancy (NV) color centers in diamond confined within a few ten nanometers as individually resolvable quantum systems. By developing a stochastic optical reconstruction microscopy (STORM) technique for NV centers, we are able to simultaneously perform sub–diffraction-limit imaging and optically detected spin resonance (ODMR) measurements on NV spins. This allows the assignment of spin resonance spectra to individual NV center locations with nanometer-scale resolution and thus further improves spatial discrimination. For example, we resolved formerly indistinguishable emitters by their spectra. Furthermore, ODMR spectra contain metrology information allowing for sub–diffraction-limit sensing of, for instance, magnetic or electric fields with inherently parallel data acquisition. As an example, we have detected nuclear spins with nanometer-scale precision. Finally, we give prospects of how this technique can evolve into a fully parallel quantum sensor for nanometer resolution imaging of delocalized quantum correlations. PMID:25267655

Trace element analysis by EPMA in geosciences: detection limit, precision and accuracy

NASA Astrophysics Data System (ADS)

Batanova, V. G.; Sobolev, A. V.; Magnin, V.

2018-01-01

Use of the electron probe microanalyser (EPMA) for trace element analysis has increased over the last decade, mainly because of improved stability of spectrometers and the electron column when operated at high probe current; development of new large-area crystal monochromators and ultra-high count rate spectrometers; full integration of energy-dispersive / wavelength-dispersive X-ray spectrometry (EDS/WDS) signals; and the development of powerful software packages. For phases that are stable under a dense electron beam, the detection limit and precision can be decreased to the ppm level by using high acceleration voltage and beam current combined with long counting time. Data on 10 elements (Na, Al, P, Ca, Ti, Cr, Mn, Co, Ni, Zn) in olivine obtained on a JEOL JXA-8230 microprobe with tungsten filament show that the detection limit decreases proportionally to the square root of counting time and probe current. For all elements equal or heavier than phosphorus (Z = 15), the detection limit decreases with increasing accelerating voltage. The analytical precision for minor and trace elements analysed in olivine at 25 kV accelerating voltage and 900 nA beam current is 4 - 18 ppm (2 standard deviations of repeated measurements of the olivine reference sample) and is similar to the detection limit of corresponding elements. To analyse trace elements accurately requires careful estimation of background, and consideration of sample damage under the beam and secondary fluorescence from phase boundaries. The development and use of matrix reference samples with well-characterised trace elements of interest is important for monitoring and improving of the accuracy. An evaluation of the accuracy of trace element analyses in olivine has been made by comparing EPMA data for new reference samples with data obtained by different in-situ and bulk analytical methods in six different laboratories worldwide. For all elements, the measured concentrations in the olivine reference sample were found to be identical (within internal precision) to reference values, suggesting that achieved precision and accuracy are similar. The spatial resolution of EPMA in a silicate matrix, even at very extreme conditions (accelerating voltage 25 kV), does not exceed 7 - 8 μm and thus is still better than laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) or secondary ion mass spectrometry (SIMS) of similar precision. These make the electron microprobe an indispensable method with applications in experimental petrology, geochemistry and cosmochemistry.

Can APEX Represent In-Field Spatial Variability and Simulate Its Effects On Crop Yields?

USDA-ARS?s Scientific Manuscript database

Precision agriculture, from variable rate nitrogen application to precision irrigation, promises improved management of resources by considering the spatial variability of topography and soil properties. Hydrologic models need to simulate the effects of this variability if they are to inform about t...

Compartmentalized Platforms for Neuro-pharmacological Research

PubMed Central

Jadhav, Amol D.; Wei, Li; Shi, Peng

2016-01-01

Dissociated primary neuronal cell culture remains an indispensable approach for neurobiology research in order to investigate basic mechanisms underlying diverse neuronal functions, drug screening and pharmacological investigation. Compartmentalization, a widely adopted technique since its emergence in 1970s enables spatial segregation of neuronal segments and detailed investigation that is otherwise limited with traditional culture methods. Although these compartmental chambers (e.g. Campenot chamber) have been proven valuable for the investigation of Peripheral Nervous System (PNS) neurons and to some extent within Central Nervous System (CNS) neurons, their utility has remained limited given the arduous manufacturing process, incompatibility with high-resolution optical imaging and limited throughput. The development in the area of microfabrication and microfluidics has enabled creation of next generation compartmentalized devices that are cheap, easy to manufacture, require reduced sample volumes, enable precise control over the cellular microenvironment both spatially as well as temporally, and permit highthroughput testing. In this review we briefly evaluate the various compartmentalization tools used for neurobiological research, and highlight application of the emerging microfluidic platforms towards in vitro single cell neurobiology. PMID:26813122

A New Threshold of Precision, 30 micro-arcsecond Parallaxes and Beyond

NASA Astrophysics Data System (ADS)

Riess, Adam

2015-10-01

The ESA Gaia mission is poised to dramatically tighten the distancescale for all stellar types, with a billion Milky Way parallaxesreaching 10 microarcseconds for V<12 mag, 20 microarcseconds atV=15, and 200 microarcseconds at V=20. These data will have enormousimpact on nearly any investigation that makes use of stellarastrophysics, including stellar evolution, galactic archeology,exoplanet characterization, and physical cosmology. Measurements thisrevolutionary demand a number of independent tests for the presence ofsystematic errors. We have developed a method that can measureparallaxes of the best-observed stars to 30 microarcseconds with WFC3using spatial scanning (Riess et al. 2014). We propose to obtain 4 newepochs of spatial-scanning measurements for 9 previously observedfields in order to collect 150 stellar parallaxes and improve thesample mean precision to 30 microarcseconds, sufficient for ameaningful test of Gaia. The proposed doubling of the temporalcoverage for these fields will deliver (1) a 40% improvement in theprecision of the HST parallaxes which otherwise limit the precision ofthe comparison, (2) the ability to weed out relevant astrometricbinaries which could otherwise pollute a number of parallaxmeasurements and the comparison to Gaia, and (3) a significant overlapin time of the HST and Gaia measurements, insuring that all parallaxesare subject to similar orbital motion in the event of undetectedbinarity, thus improving the accuracy of the comparison. We propose tofollow the old Russian proverb - trust but verify.

A New Threshold of Precision, 30 micro-arcsecond Parallaxes and Beyond

NASA Astrophysics Data System (ADS)

Riess, Adam

2016-10-01

The ESA Gaia mission is poised to dramatically tighten the distancescale for all stellar types, with a billion Milky Way parallaxesreaching 10 microarcseconds for V<12 mag, 20 microarcseconds atV=15, and 200 microarcseconds at V=20. These data will have enormousimpact on nearly any investigation that makes use of stellarastrophysics, including stellar evolution, galactic archeology,exoplanet characterization, and physical cosmology. Measurements thisrevolutionary demand a number of independent tests for the presence ofsystematic errors. We have developed a method that can measureparallaxes of the best-observed stars to 30 microarcseconds with WFC3using spatial scanning (Riess et al. 2014). We propose to obtain 4 newepochs of spatial-scanning measurements for 9 previously observedfields in order to collect 150 stellar parallaxes and improve thesample mean precision to 30 microarcseconds, sufficient for ameaningful test of Gaia. The proposed doubling of the temporalcoverage for these fields will deliver (1) a 40% improvement in theprecision of the HST parallaxes which otherwise limit the precision ofthe comparison, (2) the ability to weed out relevant astrometricbinaries which could otherwise pollute a number of parallaxmeasurements and the comparison to Gaia, and (3) a significant overlapin time of the HST and Gaia measurements, insuring that all parallaxesare subject to similar orbital motion in the event of undetectedbinarity, thus improving the accuracy of the comparison. We propose tofollow the old Russian proverb - trust but verify.

Characteristics of digital micromirror projection for 3D shape measurement at extreme speed

NASA Astrophysics Data System (ADS)

Höfling, Roland; Aswendt, Petra; Leischnig, Frank; Förster, Matthias

2015-03-01

3D shape measurement is one of the growing industrial applications of the Texas Instruments DLP® micro-mirror device. This paper presents investigations on precision and repeatability of that spatial light modulators output when it is driven up to its high-speed limit. The study concerns the basic switching behavior of the individual micro-mirror at different frame rates ranging over three orders of magnitude. The 3D shape measuring methodologies are focused on phase encoded triangulation, i.e. the projection of sinusoidal patterns. The DLP chip is a bi-stable device providing an on/off pattern at each certain moment in time, i.e. it has a native binary output. Sinusoidal patterns are the result of either a temporal integration of multiple on/off patterns or a spatial integration within one on/off pattern. Both approaches are studied experimentally with respect to precision and stability of the pattern output. The STAR-07 industrial projection unit, based upon the 0.7" DLP Discovery™4100 chipset, has been used for this work and the pattern frame rates cover the range from 225 frames per second (fps) to 50,000 fps. The STAR-07 output is detected by a photodiode, amplified, and analyzed in a Yokogawa digital storage oscilloscope. All results prove the very high precision and repeatability of the STAR-07 pattern projection, up to the extreme speed of 50,000 fps.

Optical Antenna-Based Fluorescence Correlation Spectroscopy to Probe the Nanoscale Dynamics of Biological Membranes.

PubMed

Winkler, Pamina M; Regmi, Raju; Flauraud, Valentin; Brugger, Jürgen; Rigneault, Hervé; Wenger, Jérôme; García-Parajo, María F

2018-01-04

The plasma membrane of living cells is compartmentalized at multiple spatial scales ranging from the nano- to the mesoscale. This nonrandom organization is crucial for a large number of cellular functions. At the nanoscale, cell membranes organize into dynamic nanoassemblies enriched by cholesterol, sphingolipids, and certain types of proteins. Investigating these nanoassemblies known as lipid rafts is of paramount interest in fundamental cell biology. However, this goal requires simultaneous nanometer spatial precision and microsecond temporal resolution, which is beyond the reach of common microscopes. Optical antennas based on metallic nanostructures efficiently enhance and confine light into nanometer dimensions, breaching the diffraction limit of light. In this Perspective, we discuss recent progress combining optical antennas with fluorescence correlation spectroscopy (FCS) to monitor microsecond dynamics at nanoscale spatial dimensions. These new developments offer numerous opportunities to investigate lipid and protein dynamics in both mimetic and native biological membranes.

HPT: A High Spatial Resolution Multispectral Sensor for Microsatellite Remote Sensing

PubMed Central

Takahashi, Yukihiro; Sakamoto, Yuji; Kuwahara, Toshinori

2018-01-01

Although nano/microsatellites have great potential as remote sensing platforms, the spatial and spectral resolutions of an optical payload instrument are limited. In this study, a high spatial resolution multispectral sensor, the High-Precision Telescope (HPT), was developed for the RISING-2 microsatellite. The HPT has four image sensors: three in the visible region of the spectrum used for the composition of true color images, and a fourth in the near-infrared region, which employs liquid crystal tunable filter (LCTF) technology for wavelength scanning. Band-to-band image registration methods have also been developed for the HPT and implemented in the image processing procedure. The processed images were compared with other satellite images, and proven to be useful in various remote sensing applications. Thus, LCTF technology can be considered an innovative tool that is suitable for future multi/hyperspectral remote sensing by nano/microsatellites. PMID:29463022

A method of reconstructing the spatial measurement network by mobile measurement transmitter for shipbuilding

NASA Astrophysics Data System (ADS)

Guo, Siyang; Lin, Jiarui; Yang, Linghui; Ren, Yongjie; Guo, Yin

2017-07-01

The workshop Measurement Position System (wMPS) is a distributed measurement system which is suitable for the large-scale metrology. However, there are some inevitable measurement problems in the shipbuilding industry, such as the restriction by obstacles and limited measurement range. To deal with these factors, this paper presents a method of reconstructing the spatial measurement network by mobile transmitter. A high-precision coordinate control network with more than six target points is established. The mobile measuring transmitter can be added into the measurement network using this coordinate control network with the spatial resection method. This method reconstructs the measurement network and broadens the measurement scope efficiently. To verify this method, two comparison experiments are designed with the laser tracker as the reference. The results demonstrate that the accuracy of point-to-point length is better than 0.4mm and the accuracy of coordinate measurement is better than 0.6mm.

X-ray simulations method for the large field of view

NASA Astrophysics Data System (ADS)

Schelokov, I. A.; Grigoriev, M. V.; Chukalina, M. V.; Asadchikov, V. E.

2018-03-01

In the standard approach, X-ray simulation is usually limited to the step of spatial sampling to calculate the convolution of integrals of the Fresnel type. Explicitly the sampling step is determined by the size of the last Fresnel zone in the beam aperture. In other words, the spatial sampling is determined by the precision of integral convolution calculations and is not connected with the space resolution of an optical scheme. In the developed approach the convolution in the normal space is replaced by computations of the shear strain of ambiguity function in the phase space. The spatial sampling is then determined by the space resolution of an optical scheme. The sampling step can differ in various directions because of the source anisotropy. The approach was used to simulate original images in the X-ray Talbot interferometry and showed that the simulation can be applied to optimize the methods of postprocessing.

Fabrication of high precision metallic freeform mirrors with magnetorheological finishing (MRF)

NASA Astrophysics Data System (ADS)

Beier, Matthias; Scheiding, Sebastian; Gebhardt, Andreas; Loose, Roman; Risse, Stefan; Eberhardt, Ramona; Tünnermann, Andreas

2013-09-01

The fabrication of complex shaped metal mirrors for optical imaging is a classical application area of diamond machining techniques. Aspherical and freeform shaped optical components up to several 100 mm in diameter can be manufactured with high precision in an acceptable amount of time. However, applications are naturally limited to the infrared spectral region due to scatter losses for shorter wavelengths as a result of the remaining periodic diamond turning structure. Achieving diffraction limited performance in the visible spectrum demands for the application of additional polishing steps. Magnetorheological Finishing (MRF) is a powerful tool to improve figure and finish of complex shaped optics at the same time in a single processing step. The application of MRF as a figuring tool for precise metal mirrors is a nontrivial task since the technology was primarily developed for figuring and finishing a variety of other optical materials, such as glasses or glass ceramics. In the presented work, MRF is used as a figuring tool for diamond turned aluminum lightweight mirrors with electroless nickel plating. It is applied as a direct follow-up process after diamond machining of the mirrors. A high precision measurement setup, composed of an interferometer and an advanced Computer Generated Hologram with additional alignment features, allows for precise metrology of the freeform shaped optics in short measuring cycles. Shape deviations less than 150 nm PV / 20 nm rms are achieved reliably for freeform mirrors with apertures of more than 300 mm. Characterization of removable and induced spatial frequencies is carried out by investigating the Power Spectral Density.

Transparent, conformable, active multielectrode array using organic electrochemical transistors

PubMed Central

Lee, Wonryung; Kim, Dongmin; Matsuhisa, Naoji; Nagase, Masae; Sekino, Masaki; Malliaras, George G.; Yokota, Tomoyuki; Someya, Takao

2017-01-01

Mechanically flexible active multielectrode arrays (MEA) have been developed for local signal amplification and high spatial resolution. However, their opaqueness limited optical observation and light stimulation during use. Here, we show a transparent, ultraflexible, and active MEA, which consists of transparent organic electrochemical transistors (OECTs) and transparent Au grid wirings. The transparent OECT is made of Au grid electrodes and has shown comparable performance with OECTs with nontransparent electrodes/wirings. The transparent active MEA realizes the spatial mapping of electrocorticogram electrical signals from an optogenetic rat with 1-mm spacing and shows lower light artifacts than noise level. Our active MEA would open up the possibility of precise investigation of a neural network system with direct light stimulation. PMID:28923928

Geostatistics, remote sensing and precision farming.

PubMed

Mulla, D J

1997-01-01

Precision farming is possible today because of advances in farming technology, procedures for mapping and interpolating spatial patterns, and geographic information systems for overlaying and interpreting several soil, landscape and crop attributes. The key component of precision farming is the map showing spatial patterns in field characteristics. Obtaining information for this map is often achieved by soil sampling. This approach, however, can be cost-prohibitive for grain crops. Soil sampling strategies can be simplified by use of auxiliary data provided by satellite or aerial photo imagery. This paper describes geostatistical methods for estimating spatial patterns in soil organic matter, soil test phosphorus and wheat grain yield from a combination of Thematic Mapper imaging and soil sampling.

Generating a taxonomy of spatially cued attention for visual discrimination: Effects of judgment precision and set size on attention

PubMed Central

Hetley, Richard; Dosher, Barbara Anne; Lu, Zhong-Lin

2014-01-01

Attention precues improve the performance of perceptual tasks in many but not all circumstances. These spatial attention effects may depend upon display set size or workload, and have been variously attributed to external noise filtering, stimulus enhancement, contrast gain, or response gain, or to uncertainty or other decision effects. In this study, we document systematically different effects of spatial attention in low- and high-precision judgments, with and without external noise, and in different set sizes in order to contribute to the development of a taxonomy of spatial attention. An elaborated perceptual template model (ePTM) provides an integrated account of a complex set of effects of spatial attention with just two attention factors: a set-size dependent exclusion or filtering of external noise and a narrowing of the perceptual template to focus on the signal stimulus. These results are related to the previous literature by classifying the judgment precision and presence of external noise masks in those experiments, suggesting a taxonomy of spatially cued attention in discrimination accuracy. PMID:24939234

Generating a taxonomy of spatially cued attention for visual discrimination: effects of judgment precision and set size on attention.

PubMed

Hetley, Richard; Dosher, Barbara Anne; Lu, Zhong-Lin

2014-11-01

Attention precues improve the performance of perceptual tasks in many but not all circumstances. These spatial attention effects may depend upon display set size or workload, and have been variously attributed to external noise filtering, stimulus enhancement, contrast gain, or response gain, or to uncertainty or other decision effects. In this study, we document systematically different effects of spatial attention in low- and high-precision judgments, with and without external noise, and in different set sizes in order to contribute to the development of a taxonomy of spatial attention. An elaborated perceptual template model (ePTM) provides an integrated account of a complex set of effects of spatial attention with just two attention factors: a set-size dependent exclusion or filtering of external noise and a narrowing of the perceptual template to focus on the signal stimulus. These results are related to the previous literature by classifying the judgment precision and presence of external noise masks in those experiments, suggesting a taxonomy of spatially cued attention in discrimination accuracy.

Sensitivity, accuracy, and precision issues in opto-electronic holography based on fiber optics and high-spatial- and high-digitial-resolution cameras

NASA Astrophysics Data System (ADS)

Furlong, Cosme; Yokum, Jeffrey S.; Pryputniewicz, Ryszard J.

2002-06-01

Sensitivity, accuracy, and precision characteristics in quantitative optical metrology techniques, and specifically in optoelectronic holography based on fiber optics and high-spatial and high-digital resolution cameras, are discussed in this paper. It is shown that sensitivity, accuracy, and precision dependent on both, the effective determination of optical phase and the effective characterization of the illumination-observation conditions. Sensitivity, accuracy, and precision are investigated with the aid of National Institute of Standards and Technology (NIST) traceable gages, demonstrating the applicability of quantitative optical metrology techniques to satisfy constantly increasing needs for the study and development of emerging technologies.

Profilometry of thin films on rough substrates by Raman spectroscopy

PubMed Central

Ledinský, Martin; Paviet-Salomon, Bertrand; Vetushka, Aliaksei; Geissbühler, Jonas; Tomasi, Andrea; Despeisse, Matthieu; De Wolf , Stefaan; Ballif , Christophe; Fejfar, Antonín

2016-01-01

Thin, light-absorbing films attenuate the Raman signal of underlying substrates. In this article, we exploit this phenomenon to develop a contactless thickness profiling method for thin films deposited on rough substrates. We demonstrate this technique by probing profiles of thin amorphous silicon stripes deposited on rough crystalline silicon surfaces, which is a structure exploited in high-efficiency silicon heterojunction solar cells. Our spatially-resolved Raman measurements enable the thickness mapping of amorphous silicon over the whole active area of test solar cells with very high precision; the thickness detection limit is well below 1 nm and the spatial resolution is down to 500 nm, limited only by the optical resolution. We also discuss the wider applicability of this technique for the characterization of thin layers prepared on Raman/photoluminescence-active substrates, as well as its use for single-layer counting in multilayer 2D materials such as graphene, MoS2 and WS2. PMID:27922033

Spatially resolved δ13C analysis using laser ablation isotope ratio mass spectrometry

NASA Astrophysics Data System (ADS)

Moran, J.; Riha, K. M.; Nims, M. K.; Linley, T. J.; Hess, N. J.; Nico, P. S.

2014-12-01

Inherent geochemical, organic matter, and microbial heterogeneity over small spatial scales can complicate studies of carbon dynamics through soils. Stable isotope analysis has a strong history of helping track substrate turnover, delineate rhizosphere activity zones, and identifying transitions in vegetation cover, but most traditional isotope approaches are limited in spatial resolution by a combination of physical separation techniques (manual dissection) and IRMS instrument sensitivity. We coupled laser ablation sampling with isotope measurement via IRMS to enable spatially resolved analysis over solid surfaces. Once a targeted sample region is ablated the resulting particulates are entrained in a helium carrier gas and passed through a combustion reactor where carbon is converted to CO2. Cyrotrapping of the resulting CO2 enables a reduction in carrier gas flow which improves overall measurement sensitivity versus traditional, high flow sample introduction. Currently we are performing sample analysis at 50 μm resolution, require 65 ng C per analysis, and achieve measurement precision consistent with other continuous flow techniques. We will discuss applications of the laser ablation IRMS (LA-IRMS) system to microbial communities and fish ecology studies to demonstrate the merits of this technique and how similar analytical approaches can be transitioned to soil systems. Preliminary efforts at analyzing soil samples will be used to highlight strengths and limitations of the LA-IRMS approach, paying particular attention to sample preparation requirements, spatial resolution, sample analysis time, and the types of questions most conducive to analysis via LA-IRMS.

Using Precision in STEM Language: A Qualitative Look

ERIC Educational Resources Information Center

Capraro, Mary M.; Bicer, Ali; Grant, Melva R.; Lincoln, Yvonna S.

2017-01-01

Teachers need to develop a variety of pedagogical strategies that can encourage precise and accurate communication--an extremely important 21st century skill. Precision with STEM oral language is essential. Emphasizing oral communication with precise language in combination with increased spatial skills with modeling can improve the chances of…

Experimental demonstration of spatially coherent beam combining using optical parametric amplification.

PubMed

Kurita, Takashi; Sueda, Keiichi; Tsubakimoto, Koji; Miyanaga, Noriaki

2010-07-05

We experimentally demonstrated coherent beam combining using optical parametric amplification with a nonlinear crystal pumped by random-phased multiple-beam array of the second harmonic of a Nd:YAG laser at 10-Hz repetition rate. In the proof-of-principle experiment, the phase jump between two pump beams was precisely controlled by a motorized actuator. For the demonstration of multiple-beam combining a random phase plate was used to create random-phased beamlets as a pump pulse. Far-field patterns of the pump, the signal, and the idler indicated that the spatially coherent signal beams were obtained on both cases. This approach allows scaling of the intensity of optical parametric chirped pulse amplification up to the exa-watt level while maintaining diffraction-limited beam quality.

Dendritic protein synthesis in the normal and diseased brain

PubMed Central

Swanger, Sharon A.; Bassell, Gary J.

2015-01-01

Synaptic activity is a spatially-limited process that requires a precise, yet dynamic, complement of proteins within the synaptic micro-domain. The maintenance and regulation of these synaptic proteins is regulated, in part, by local mRNA translation in dendrites. Protein synthesis within the postsynaptic compartment allows neurons tight spatial and temporal control of synaptic protein expression, which is critical for proper functioning of synapses and neural circuits. In this review, we discuss the identity of proteins synthesized within dendrites, the receptor-mediated mechanisms regulating their synthesis, and the possible roles for these locally synthesized proteins. We also explore how our current understanding of dendritic protein synthesis in the hippocampus can be applied to new brain regions and to understanding the pathological mechanisms underlying varied neurological diseases. PMID:23262237

Impairments in Precision, Rather than Spatial Strategy, Characterize Performance on the Virtual Morris Water Maze: A Case Study

PubMed Central

Kolarik, Branden S.; Shahlaie, Kiarash; Hassan, Abdul; Borders, Alyssa A.; Kaufman, Kyle C.; Gurkoff, Gene; Yonelinas, Andy P.; Ekstrom, Arne D.

2015-01-01

Damage to the medial temporal lobes produces profound amnesia, greatly impairing the ability of patients to learn about new associations and events. While studies in rodents suggest a strong link between damage to the hippocampus and the ability to navigate using distal landmarks in a spatial environment, the connection between navigation and memory in humans remains less clear. Past studies on human navigation have provided mixed findings about whether patients with damage to the medial temporal lobes can successfully acquire and navigate new spatial environments, possibly due, in part, to issues related to patient demographics and characterization of medial temporal lobe damage. Here, we report findings from a young, high functioning patient who suffered severe medial temporal lobe damage. Although the patient is densely amnestic, her ability to acquire and utilize new, but coarse, spatial “maps” appears largely intact. Specifically, a novel computational analysis focused on the precision of her spatial search revealed a significant deficit in spatial precision rather than spatial search strategy. These findings argue that an intact hippocampus in humans is not necessary for representing multiple external landmarks during spatial navigation of new environments. We suggest instead that the human hippocampus may store and represent complex high-resolution bindings of features in the environment as part of a larger role in perception, memory, and navigation. PMID:26593960

SGA-WZ: A New Strapdown Airborne Gravimeter

PubMed Central

Huang, Yangming; Olesen, Arne Vestergaard; Wu, Meiping; Zhang, Kaidong

2012-01-01

Inertial navigation systems and gravimeters are now routinely used to map the regional gravitational quantities from an aircraft with mGal accuracy and a spatial resolution of a few kilometers. However, airborne gravimeter of this kind is limited by the inaccuracy of the inertial sensor performance, the integrated navigation technique and the kinematic acceleration determination. As the GPS technique developed, the vehicle acceleration determination is no longer the limiting factor in airborne gravity due to the cancellation of the common mode acceleration in differential mode. A new airborne gravimeter taking full advantage of the inertial navigation system is described with improved mechanical design, high precision time synchronization, better thermal control and optimized sensor modeling. Apart from the general usage, the Global Positioning System (GPS) after differentiation is integrated to the inertial navigation system which provides not only more precise altitude information along with the navigation aiding, but also an effective way to calculate the vehicle acceleration. Design description and test results on the performance of the gyroscopes and accelerations will be emphasized. Analysis and discussion of the airborne field test results are also given. PMID:23012545

A fundamental study of laser-induced breakdown spectroscopy using fiber optics for remote measurements of trace metals. Interim progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goode, S.R.; Angel, S.M.

1997-01-01

'The long-term goal of this project is to develop a system to measure the elemental composition of unprepared samples using laser-induced breakdown spectroscopy, LIBS, with a fiber-optic probe. From images shown in this report it is evident that the temporal and spatial behavior of laser-induced plasmas IS a complex process. However, through the use of spectral imaging, optimal conditions can be determined for collecting the atomic emission signal in these plasmas. By tailoring signal collection to the regions of the plasma that contain the highest emission signal with the least amount of background interference both the detection limits and themore » precision of LIBS measurements could be improved. The optimal regions for both gated and possibly non-gated LIBS measurements have been shown to correspond to the inner regions and outer regions, respectively, in an axial plasma. By using this data fiber-optic LIBS probe designs can be optimized for collecting plasma emission at the optimal regions for improved detection limits and precision in a LIBS measurement.'« less

Mapping stream habitats with a global positioning system: Accuracy, precision, and comparison with traditional methods

USGS Publications Warehouse

Dauwalter, D.C.; Fisher, W.L.; Belt, K.C.

2006-01-01

We tested the precision and accuracy of the Trimble GeoXT??? global positioning system (GPS) handheld receiver on point and area features and compared estimates of stream habitat dimensions (e.g., lengths and areas of riffles and pools) that were made in three different Oklahoma streams using the GPS receiver and a tape measure. The precision of differentially corrected GPS (DGPS) points was not affected by the number of GPS position fixes (i.e., geographic location estimates) averaged per DGPS point. Horizontal error of points ranged from 0.03 to 2.77 m and did not differ with the number of position fixes per point. The error of area measurements ranged from 0.1% to 110.1% but decreased as the area increased. Again, error was independent of the number of position fixes averaged per polygon corner. The estimates of habitat lengths, widths, and areas did not differ when measured using two methods of data collection (GPS and a tape measure), nor did the differences among methods change at three stream sites with contrasting morphologies. Measuring features with a GPS receiver was up to 3.3 times faster on average than using a tape measure, although signal interference from high streambanks or overhanging vegetation occasionally limited satellite signal availability and prolonged measurements with a GPS receiver. There were also no differences in precision of habitat dimensions when mapped using a continuous versus a position fix average GPS data collection method. Despite there being some disadvantages to using the GPS in stream habitat studies, measuring stream habitats with a GPS resulted in spatially referenced data that allowed the assessment of relative habitat position and changes in habitats over time, and was often faster than using a tape measure. For most spatial scales of interest, the precision and accuracy of DGPS data are adequate and have logistical advantages when compared to traditional methods of measurement. ?? 2006 Springer Science+Business Media, Inc.

Simple geometric algorithms to aid in clearance management for robotic mechanisms

NASA Technical Reports Server (NTRS)

Copeland, E. L.; Ray, L. D.; Peticolas, J. D.

1981-01-01

Global geometric shapes such as lines, planes, circles, spheres, cylinders, and the associated computational algorithms which provide relatively inexpensive estimates of minimum spatial clearance for safe operations were selected. The Space Shuttle, remote manipulator system, and the Power Extension Package are used as an example. Robotic mechanisms operate in quarters limited by external structures and the problem of clearance is often of considerable interest. Safe clearance management is simple and suited to real time calculation, whereas contact prediction requires more precision, sophistication, and computational overhead.

French Meteor Network for High Precision Orbits of Meteoroids

NASA Technical Reports Server (NTRS)

Atreya, P.; Vaubaillon, J.; Colas, F.; Bouley, S.; Gaillard, B.; Sauli, I.; Kwon, M. K.

2011-01-01

There is a lack of precise meteoroids orbit from video observations as most of the meteor stations use off-the-shelf CCD cameras. Few meteoroids orbit with precise semi-major axis are available using film photographic method. Precise orbits are necessary to compute the dust flux in the Earth s vicinity, and to estimate the ejection time of the meteoroids accurately by comparing them with the theoretical evolution model. We investigate the use of large CCD sensors to observe multi-station meteors and to compute precise orbit of these meteoroids. An ideal spatial and temporal resolution to get an accuracy to those similar of photographic plates are discussed. Various problems faced due to the use of large CCD, such as increasing the spatial and the temporal resolution at the same time and computational problems in finding the meteor position are illustrated.

Controlled deterministic implantation by nanostencil lithography at the limit of ion-aperture straggling

NASA Astrophysics Data System (ADS)

Alves, A. D. C.; Newnham, J.; van Donkelaar, J. A.; Rubanov, S.; McCallum, J. C.; Jamieson, D. N.

2013-04-01

Solid state electronic devices fabricated in silicon employ many ion implantation steps in their fabrication. In nanoscale devices deterministic implants of dopant atoms with high spatial precision will be needed to overcome problems with statistical variations in device characteristics and to open new functionalities based on controlled quantum states of single atoms. However, to deterministically place a dopant atom with the required precision is a significant technological challenge. Here we address this challenge with a strategy based on stepped nanostencil lithography for the construction of arrays of single implanted atoms. We address the limit on spatial precision imposed by ion straggling in the nanostencil—fabricated with the readily available focused ion beam milling technique followed by Pt deposition. Two nanostencils have been fabricated; a 60 nm wide aperture in a 3 μm thick Si cantilever and a 30 nm wide aperture in a 200 nm thick Si3N4 membrane. The 30 nm wide aperture demonstrates the fabricating process for sub-50 nm apertures while the 60 nm aperture was characterized with 500 keV He+ ion forward scattering to measure the effect of ion straggling in the collimator and deduce a model for its internal structure using the GEANT4 ion transport code. This model is then applied to simulate collimation of a 14 keV P+ ion beam in a 200 nm thick Si3N4 membrane nanostencil suitable for the implantation of donors in silicon. We simulate collimating apertures with widths in the range of 10-50 nm because we expect the onset of J-coupling in a device with 30 nm donor spacing. We find that straggling in the nanostencil produces mis-located implanted ions with a probability between 0.001 and 0.08 depending on the internal collimator profile and the alignment with the beam direction. This result is favourable for the rapid prototyping of a proof-of-principle device containing multiple deterministically implanted dopants.

GOCE, Satellite Gravimetry and Antarctic Mass Transports

NASA Astrophysics Data System (ADS)

Rummel, Reiner; Horwath, Martin; Yi, Weiyong; Albertella, Alberta; Bosch, Wolfgang; Haagmans, Roger

2011-09-01

In 2009 the European Space Agency satellite mission GOCE (Gravity Field and Steady-State Ocean Circulation Explorer) was launched. Its objectives are the precise and detailed determination of the Earth's gravity field and geoid. Its core instrument, a three axis gravitational gradiometer, measures the gravity gradient components V xx , V yy , V zz and V xz (second-order derivatives of the gravity potential V) with high precision and V xy , V yz with low precision, all in the instrument reference frame. The long wavelength gravity field is recovered from the orbit, measured by GPS (Global Positioning System). Characteristic elements of the mission are precise star tracking, a Sun-synchronous and very low (260 km) orbit, angular control by magnetic torquing and an extremely stiff and thermally stable instrument environment. GOCE is complementary to GRACE (Gravity Recovery and Climate Experiment), another satellite gravity mission, launched in 2002. While GRACE is designed to measure temporal gravity variations, albeit with limited spatial resolution, GOCE is aiming at maximum spatial resolution, at the expense of accuracy at large spatial scales. Thus, GOCE will not provide temporal variations but is tailored to the recovery of the fine scales of the stationary field. GRACE is very successful in delivering time series of large-scale mass changes of the Antarctic ice sheet, among other things. Currently, emphasis of respective GRACE analyses is on regional refinement and on changes of temporal trends. One of the challenges is the separation of ice mass changes from glacial isostatic adjustment. Already from a few months of GOCE data, detailed gravity gradients can be recovered. They are presented here for the area of Antarctica. As one application, GOCE gravity gradients are an important addition to the sparse gravity data of Antarctica. They will help studies of the crustal and lithospheric field. A second area of application is ocean circulation. The geoid surface from the gravity field model GOCO01S allows us now to generate rather detailed maps of the mean dynamic ocean topography and of geostrophic flow velocities in the region of the Antarctic Circumpolar Current.

A new polishing process for large-aperture and high-precision aspheric surface

NASA Astrophysics Data System (ADS)

Nie, Xuqing; Li, Shengyi; Dai, Yifan; Song, Ci

2013-07-01

The high-precision aspheric surface is hard to be achieved due to the mid-spatial frequency error in the finishing step. The influence of mid-spatial frequency error is studied through the simulations and experiments. In this paper, a new polishing process based on magnetorheological finishing (MRF), smooth polishing (SP) and ion beam figuring (IBF) is proposed. A 400mm aperture parabolic surface is polished with this new process. The smooth polishing (SP) is applied after rough machining to control the MSF error. In the middle finishing step, most of low-spatial frequency error is removed by MRF rapidly, then the mid-spatial frequency error is restricted by SP, finally ion beam figuring is used to finish the surface. The surface accuracy is improved from the initial 37.691nm (rms, 95% aperture) to the final 4.195nm. The results show that the new polishing process is effective to manufacture large-aperture and high-precision aspheric surface.

Role of spatial averaging in multicellular gradient sensing.

PubMed

Smith, Tyler; Fancher, Sean; Levchenko, Andre; Nemenman, Ilya; Mugler, Andrew

2016-05-20

Gradient sensing underlies important biological processes including morphogenesis, polarization, and cell migration. The precision of gradient sensing increases with the length of a detector (a cell or group of cells) in the gradient direction, since a longer detector spans a larger range of concentration values. Intuition from studies of concentration sensing suggests that precision should also increase with detector length in the direction transverse to the gradient, since then spatial averaging should reduce the noise. However, here we show that, unlike for concentration sensing, the precision of gradient sensing decreases with transverse length for the simplest gradient sensing model, local excitation-global inhibition. The reason is that gradient sensing ultimately relies on a subtraction of measured concentration values. While spatial averaging indeed reduces the noise in these measurements, which increases precision, it also reduces the covariance between the measurements, which results in the net decrease in precision. We demonstrate how a recently introduced gradient sensing mechanism, regional excitation-global inhibition (REGI), overcomes this effect and recovers the benefit of transverse averaging. Using a REGI-based model, we compute the optimal two- and three-dimensional detector shapes, and argue that they are consistent with the shapes of naturally occurring gradient-sensing cell populations.

[Estimation of desert vegetation coverage based on multi-source remote sensing data].

PubMed

Wan, Hong-Mei; Li, Xia; Dong, Dao-Rui

2012-12-01

Taking the lower reaches of Tarim River in Xinjiang of Northwest China as study areaAbstract: Taking the lower reaches of Tarim River in Xinjiang of Northwest China as study area and based on the ground investigation and the multi-source remote sensing data of different resolutions, the estimation models for desert vegetation coverage were built, with the precisions of different estimation methods and models compared. The results showed that with the increasing spatial resolution of remote sensing data, the precisions of the estimation models increased. The estimation precision of the models based on the high, middle-high, and middle-low resolution remote sensing data was 89.5%, 87.0%, and 84.56%, respectively, and the precisions of the remote sensing models were higher than that of vegetation index method. This study revealed the change patterns of the estimation precision of desert vegetation coverage based on different spatial resolution remote sensing data, and realized the quantitative conversion of the parameters and scales among the high, middle, and low spatial resolution remote sensing data of desert vegetation coverage, which would provide direct evidence for establishing and implementing comprehensive remote sensing monitoring scheme for the ecological restoration in the study area.

Role of spatial averaging in multicellular gradient sensing

NASA Astrophysics Data System (ADS)

Smith, Tyler; Fancher, Sean; Levchenko, Andre; Nemenman, Ilya; Mugler, Andrew

2016-06-01

Gradient sensing underlies important biological processes including morphogenesis, polarization, and cell migration. The precision of gradient sensing increases with the length of a detector (a cell or group of cells) in the gradient direction, since a longer detector spans a larger range of concentration values. Intuition from studies of concentration sensing suggests that precision should also increase with detector length in the direction transverse to the gradient, since then spatial averaging should reduce the noise. However, here we show that, unlike for concentration sensing, the precision of gradient sensing decreases with transverse length for the simplest gradient sensing model, local excitation-global inhibition. The reason is that gradient sensing ultimately relies on a subtraction of measured concentration values. While spatial averaging indeed reduces the noise in these measurements, which increases precision, it also reduces the covariance between the measurements, which results in the net decrease in precision. We demonstrate how a recently introduced gradient sensing mechanism, regional excitation-global inhibition (REGI), overcomes this effect and recovers the benefit of transverse averaging. Using a REGI-based model, we compute the optimal two- and three-dimensional detector shapes, and argue that they are consistent with the shapes of naturally occurring gradient-sensing cell populations.

Comparison of low cost measurement techniques for long-term monitoring of atmospheric ammonia.

PubMed

Sutton, M A; Miners, B; Tang, Y S; Milford, C; Wyers, G P; Duyzer, J H; Fowler, D

2001-10-01

An inter-comparison of techniques for long-term sampling of atmospheric ammonia (NH3) was conducted with a view to establishing a national network with > 50 sites. Key requirements were for: a low cost system, simplicity and durability to enable a postal exchange with local site operators, a precision of < +/- 20% for monthly sampling at expected NH3 concentrations of 1-2 micrograms m-3, a detection limit sufficient to resolve the small NH3 concentrations (< 0.2 microgram m-3) expected in remote parts of the UK, and a quantitative means to establish quality control. Five sampling methods were compared: A, a commercially available membrane diffusion tube (exposed in triplicate), with membranes removed immediately after sampling; B, the above method, with the membranes left in place until analysis; C, open-ended diffusion tubes (exposed with 4 replicates); D, a new active sampling diffusion denuder system; and E, an active sampling bubbler system. Method D consisted of two 0.1 m acid coated glass denuders in series with sampling at approximately 0.3 l min-1. These methods were deployed at 6 locations in the UK and the Netherlands and compared against reference estimates. Method D was the most precise and sensitive of the techniques compared, with a detection limit of < 0.1 microgram m-3. The bubbler provided a less precise estimate of NH3 concentration, and also suffered several practical drawbacks. The diffusion tubes were found to correlate with the reference at high concentrations (> 3 micrograms m-3), but were less precise and overestimated NH3 at smaller concentrations. Of the passive methods, A was the most precise and C the least precise. On the basis of the results, method D has been implemented in the national network, together with application of method A to explore spatial variability in regions with expected high NH3 concentrations.

Deterministic ion beam material adding technology for high-precision optical surfaces.

PubMed

Liao, Wenlin; Dai, Yifan; Xie, Xuhui; Zhou, Lin

2013-02-20

Although ion beam figuring (IBF) provides a highly deterministic method for the precision figuring of optical components, several problems still need to be addressed, such as the limited correcting capability for mid-to-high spatial frequency surface errors and low machining efficiency for pit defects on surfaces. We propose a figuring method named deterministic ion beam material adding (IBA) technology to solve those problems in IBF. The current deterministic optical figuring mechanism, which is dedicated to removing local protuberances on optical surfaces, is enriched and developed by the IBA technology. Compared with IBF, this method can realize the uniform convergence of surface errors, where the particle transferring effect generated in the IBA process can effectively correct the mid-to-high spatial frequency errors. In addition, IBA can rapidly correct the pit defects on the surface and greatly improve the machining efficiency of the figuring process. The verification experiments are accomplished on our experimental installation to validate the feasibility of the IBA method. First, a fused silica sample with a rectangular pit defect is figured by using IBA. Through two iterations within only 47.5 min, this highly steep pit is effectively corrected, and the surface error is improved from the original 24.69 nm root mean square (RMS) to the final 3.68 nm RMS. Then another experiment is carried out to demonstrate the correcting capability of IBA for mid-to-high spatial frequency surface errors, and the final results indicate that the surface accuracy and surface quality can be simultaneously improved.

Implementation of a channelized Hotelling observer model to assess image quality of x-ray angiography systems.

PubMed

Favazza, Christopher P; Fetterly, Kenneth A; Hangiandreou, Nicholas J; Leng, Shuai; Schueler, Beth A

2015-01-01

Evaluation of flat-panel angiography equipment through conventional image quality metrics is limited by the scope of standard spatial-domain image quality metric(s), such as contrast-to-noise ratio and spatial resolution, or by restricted access to appropriate data to calculate Fourier domain measurements, such as modulation transfer function, noise power spectrum, and detective quantum efficiency. Observer models have been shown capable of overcoming these limitations and are able to comprehensively evaluate medical-imaging systems. We present a spatial domain-based channelized Hotelling observer model to calculate the detectability index (DI) of our different sized disks and compare the performance of different imaging conditions and angiography systems. When appropriate, changes in DIs were compared to expectations based on the classical Rose model of signal detection to assess linearity of the model with quantum signal-to-noise ratio (SNR) theory. For these experiments, the estimated uncertainty of the DIs was less than 3%, allowing for precise comparison of imaging systems or conditions. For most experimental variables, DI changes were linear with expectations based on quantum SNR theory. DIs calculated for the smallest objects demonstrated nonlinearity with quantum SNR theory due to system blur. Two angiography systems with different detector element sizes were shown to perform similarly across the majority of the detection tasks.

Application of Raytracing Through the High Resolution Numerical Weather Model HIRLAM for the Analysis of European VLBI

NASA Technical Reports Server (NTRS)

Garcia-Espada, Susana; Haas, Rudiger; Colomer, Francisco

2010-01-01

An important limitation for the precision in the results obtained by space geodetic techniques like VLBI and GPS are tropospheric delays caused by the neutral atmosphere, see e.g. [1]. In recent years numerical weather models (NWM) have been applied to improve mapping functions which are used for tropospheric delay modeling in VLBI and GPS data analyses. In this manuscript we use raytracing to calculate slant delays and apply these to the analysis of Europe VLBI data. The raytracing is performed through the limited area numerical weather prediction (NWP) model HIRLAM. The advantages of this model are high spatial (0.2 deg. x 0.2 deg.) and high temporal resolution (in prediction mode three hours).

Spatial Distribution and Sampling Plans With Fixed Level of Precision for Citrus Aphids (Hom., Aphididae) on Two Orange Species.

PubMed

Kafeshani, Farzaneh Alizadeh; Rajabpour, Ali; Aghajanzadeh, Sirous; Gholamian, Esmaeil; Farkhari, Mohammad

2018-04-02

Aphis spiraecola Patch, Aphis gossypii Glover, and Toxoptera aurantii Boyer de Fonscolombe are three important aphid pests of citrus orchards. In this study, spatial distributions of the aphids on two orange species, Satsuma mandarin and Thomson navel, were evaluated using Taylor's power law and Iwao's patchiness. In addition, a fixed-precision sequential sampling plant was developed for each species on the host plant by Green's model at precision levels of 0.25 and 0.1. The results revealed that spatial distribution parameters and therefore the sampling plan were significantly different according to aphid and host plant species. Taylor's power law provides a better fit for the data than Iwao's patchiness regression. Except T. aurantii on Thomson navel orange, spatial distribution patterns of the aphids were aggregative on both citrus. T. aurantii had regular dispersion pattern on Thomson navel orange. Optimum sample size of the aphids varied from 30-2061 and 1-1622 shoots on Satsuma mandarin and Thomson navel orange based on aphid species and desired precision level. Calculated stop lines of the aphid species on Satsuma mandarin and Thomson navel orange ranged from 0.48 to 19 and 0.19 to 80.4 aphids per 24 shoots according to aphid species and desired precision level. The performance of the sampling plan was validated by resampling analysis using resampling for validation of sampling plans (RVSP) software. This sampling program is useful for IPM program of the aphids in citrus orchards.

Optimal configurations of spatial scale for grid cell firing under noise and uncertainty

PubMed Central

Towse, Benjamin W.; Barry, Caswell; Bush, Daniel; Burgess, Neil

2014-01-01

We examined the accuracy with which the location of an agent moving within an environment could be decoded from the simulated firing of systems of grid cells. Grid cells were modelled with Poisson spiking dynamics and organized into multiple ‘modules’ of cells, with firing patterns of similar spatial scale within modules and a wide range of spatial scales across modules. The number of grid cells per module, the spatial scaling factor between modules and the size of the environment were varied. Errors in decoded location can take two forms: small errors of precision and larger errors resulting from ambiguity in decoding periodic firing patterns. With enough cells per module (e.g. eight modules of 100 cells each) grid systems are highly robust to ambiguity errors, even over ranges much larger than the largest grid scale (e.g. over a 500 m range when the maximum grid scale is 264 cm). Results did not depend strongly on the precise organization of scales across modules (geometric, co-prime or random). However, independent spatial noise across modules, which would occur if modules receive independent spatial inputs and might increase with spatial uncertainty, dramatically degrades the performance of the grid system. This effect of spatial uncertainty can be mitigated by uniform expansion of grid scales. Thus, in the realistic regimes simulated here, the optimal overall scale for a grid system represents a trade-off between minimizing spatial uncertainty (requiring large scales) and maximizing precision (requiring small scales). Within this view, the temporary expansion of grid scales observed in novel environments may be an optimal response to increased spatial uncertainty induced by the unfamiliarity of the available spatial cues. PMID:24366144

Spatial analysis of NDVI readings with difference sampling density

USDA-ARS?s Scientific Manuscript database

Advanced remote sensing technologies provide research an innovative way of collecting spatial data for use in precision agriculture. Sensor information and spatial analysis together allow for a complete understanding of the spatial complexity of a field and its crop. The objective of the study was...

Sensor-based precision fertilization for field crops

USDA-ARS?s Scientific Manuscript database

From the development of the first viable variable-rate fertilizer systems in the upper Midwest USA, precision agriculture is now approaching three decades old. Early precision fertilization practice relied on laboratory analysis of soil samples collected on a spatial pattern to define the nutrient-s...

Screening for Learning and Memory Mutations: A New Approach.

PubMed

Gallistel, C R; King, A P; Daniel, A M; Freestone, D; Papachristos, E B; Balci, F; Kheifets, A; Zhang, J; Su, X; Schiff, G; Kourtev, H

2010-01-30

We describe a fully automated, live-in 24/7 test environment, with experimental protocols that measure the accuracy and precision with which mice match the ratio of their expected visit durations to the ratio of the incomes obtained from two hoppers, the progress of instrumental and classical conditioning (trials-to-acquisition), the accuracy and precision of interval timing, the effect of relative probability on the choice of a timed departure target, and the accuracy and precision of memory for the times of day at which food is available. The system is compact; it obviates the handling of the mice during testing; it requires negligible amounts of experimenter/technician time; and it delivers clear and extensive results from 3 protocols within a total of 7-9 days after the mice are placed in the test environment. Only a single 24-hour period is required for the completion of first protocol (the matching protocol), which is strong test of temporal and spatial estimation and memory mechanisms. Thus, the system permits the extensive screening of many mice in a short period of time and in limited space. The software is publicly available.

Using confidence intervals to evaluate the focus alignment of spectrograph detector arrays.

PubMed

Sawyer, Travis W; Hawkins, Kyle S; Damento, Michael

2017-06-20

High-resolution spectrographs extract detailed spectral information of a sample and are frequently used in astronomy, laser-induced breakdown spectroscopy, and Raman spectroscopy. These instruments employ dispersive elements such as prisms and diffraction gratings to spatially separate different wavelengths of light, which are then detected by a charge-coupled device (CCD) or complementary metal-oxide-semiconductor (CMOS) detector array. Precise alignment along the optical axis (focus position) of the detector array is critical to maximize the instrumental resolution; however, traditional approaches of scanning the detector through focus lack a quantitative measure of precision, limiting the repeatability and relying on one's experience. Here we propose a method to evaluate the focus alignment of spectrograph detector arrays by establishing confidence intervals to measure the alignment precision. We show that propagation of uncertainty can be used to estimate the variance in an alignment, thus providing a quantitative and repeatable means to evaluate the precision and confidence of an alignment. We test the approach by aligning the detector array of a prototype miniature echelle spectrograph. The results indicate that the procedure effectively quantifies alignment precision, enabling one to objectively determine when an alignment has reached an acceptable level. This quantitative approach also provides a foundation for further optimization, including automated alignment. Furthermore, the procedure introduced here can be extended to other alignment techniques that rely on numerically fitting data to a model, providing a general framework for evaluating the precision of alignment methods.

Spatial Structure of Above-Ground Biomass Limits Accuracy of Carbon Mapping in Rainforest but Large Scale Forest Inventories Can Help to Overcome.

PubMed

Guitet, Stéphane; Hérault, Bruno; Molto, Quentin; Brunaux, Olivier; Couteron, Pierre

2015-01-01

Precise mapping of above-ground biomass (AGB) is a major challenge for the success of REDD+ processes in tropical rainforest. The usual mapping methods are based on two hypotheses: a large and long-ranged spatial autocorrelation and a strong environment influence at the regional scale. However, there are no studies of the spatial structure of AGB at the landscapes scale to support these assumptions. We studied spatial variation in AGB at various scales using two large forest inventories conducted in French Guiana. The dataset comprised 2507 plots (0.4 to 0.5 ha) of undisturbed rainforest distributed over the whole region. After checking the uncertainties of estimates obtained from these data, we used half of the dataset to develop explicit predictive models including spatial and environmental effects and tested the accuracy of the resulting maps according to their resolution using the rest of the data. Forest inventories provided accurate AGB estimates at the plot scale, for a mean of 325 Mg.ha-1. They revealed high local variability combined with a weak autocorrelation up to distances of no more than10 km. Environmental variables accounted for a minor part of spatial variation. Accuracy of the best model including spatial effects was 90 Mg.ha-1 at plot scale but coarse graining up to 2-km resolution allowed mapping AGB with accuracy lower than 50 Mg.ha-1. Whatever the resolution, no agreement was found with available pan-tropical reference maps at all resolutions. We concluded that the combined weak autocorrelation and weak environmental effect limit AGB maps accuracy in rainforest, and that a trade-off has to be found between spatial resolution and effective accuracy until adequate "wall-to-wall" remote sensing signals provide reliable AGB predictions. Waiting for this, using large forest inventories with low sampling rate (<0.5%) may be an efficient way to increase the global coverage of AGB maps with acceptable accuracy at kilometric resolution.

Privacy protection versus cluster detection in spatial epidemiology.

PubMed

Olson, Karen L; Grannis, Shaun J; Mandl, Kenneth D

2006-11-01

Patient data that includes precise locations can reveal patients' identities, whereas data aggregated into administrative regions may preserve privacy and confidentiality. We investigated the effect of varying degrees of address precision (exact latitude and longitude vs the center points of zip code or census tracts) on detection of spatial clusters of cases. We simulated disease outbreaks by adding supplementary spatially clustered emergency department visits to authentic hospital emergency department syndromic surveillance data. We identified clusters with a spatial scan statistic and evaluated detection rate and accuracy. More clusters were identified, and clusters were more accurately detected, when exact locations were used. That is, these clusters contained at least half of the simulated points and involved few additional emergency department visits. These results were especially apparent when the synthetic clustered points crossed administrative boundaries and fell into multiple zip code or census tracts. The spatial cluster detection algorithm performed better when addresses were analyzed as exact locations than when they were analyzed as center points of zip code or census tracts, particularly when the clustered points crossed administrative boundaries. Use of precise addresses offers improved performance, but this practice must be weighed against privacy concerns in the establishment of public health data exchange policies.

An electron beam linear scanning mode for industrial limited-angle nano-computed tomography.

PubMed

Wang, Chengxiang; Zeng, Li; Yu, Wei; Zhang, Lingli; Guo, Yumeng; Gong, Changcheng

2018-01-01

Nano-computed tomography (nano-CT), which utilizes X-rays to research the inner structure of some small objects and has been widely utilized in biomedical research, electronic technology, geology, material sciences, etc., is a high spatial resolution and non-destructive research technique. A traditional nano-CT scanning model with a very high mechanical precision and stability of object manipulator, which is difficult to reach when the scanned object is continuously rotated, is required for high resolution imaging. To reduce the scanning time and attain a stable and high resolution imaging in industrial non-destructive testing, we study an electron beam linear scanning mode of nano-CT system that can avoid mechanical vibration and object movement caused by the continuously rotated object. Furthermore, to further save the scanning time and study how small the scanning range could be considered with acceptable spatial resolution, an alternating iterative algorithm based on ℓ 0 minimization is utilized to limited-angle nano-CT reconstruction problem with the electron beam linear scanning mode. The experimental results confirm the feasibility of the electron beam linear scanning mode of nano-CT system.

An electron beam linear scanning mode for industrial limited-angle nano-computed tomography

NASA Astrophysics Data System (ADS)

Wang, Chengxiang; Zeng, Li; Yu, Wei; Zhang, Lingli; Guo, Yumeng; Gong, Changcheng

2018-01-01

Nano-computed tomography (nano-CT), which utilizes X-rays to research the inner structure of some small objects and has been widely utilized in biomedical research, electronic technology, geology, material sciences, etc., is a high spatial resolution and non-destructive research technique. A traditional nano-CT scanning model with a very high mechanical precision and stability of object manipulator, which is difficult to reach when the scanned object is continuously rotated, is required for high resolution imaging. To reduce the scanning time and attain a stable and high resolution imaging in industrial non-destructive testing, we study an electron beam linear scanning mode of nano-CT system that can avoid mechanical vibration and object movement caused by the continuously rotated object. Furthermore, to further save the scanning time and study how small the scanning range could be considered with acceptable spatial resolution, an alternating iterative algorithm based on ℓ0 minimization is utilized to limited-angle nano-CT reconstruction problem with the electron beam linear scanning mode. The experimental results confirm the feasibility of the electron beam linear scanning mode of nano-CT system.

Progress toward accurate high spatial resolution actinide analysis by EPMA

NASA Astrophysics Data System (ADS)

Jercinovic, M. J.; Allaz, J. M.; Williams, M. L.

2010-12-01

High precision, high spatial resolution EPMA of actinides is a significant issue for geochronology, resource geochemistry, and studies involving the nuclear fuel cycle. Particular interest focuses on understanding of the behavior of Th and U in the growth and breakdown reactions relevant to actinide-bearing phases (monazite, zircon, thorite, allanite, etc.), and geochemical fractionation processes involving Th and U in fluid interactions. Unfortunately, the measurement of minor and trace concentrations of U in the presence of major concentrations of Th and/or REEs is particularly problematic, especially in complexly zoned phases with large compositional variation on the micro or nanoscale - spatial resolutions now accessible with modern instruments. Sub-micron, high precision compositional analysis of minor components is feasible in very high Z phases where scattering is limited at lower kV (15kV or less) and where the beam diameter can be kept below 400nm at high current (e.g. 200-500nA). High collection efficiency spectrometers and high performance electron optics in EPMA now allow the use of lower overvoltage through an exceptional range in beam current, facilitating higher spatial resolution quantitative analysis. The U LIII edge at 17.2 kV precludes L-series analysis at low kV (high spatial resolution), requiring careful measurements of the actinide M series. Also, U-La detection (wavelength = 0.9A) requires the use of LiF (220) or (420), not generally available on most instruments. Strong peak overlaps of Th on U make highly accurate interference correction mandatory, with problems compounded by the ThMIV and ThMV absorption edges affecting peak, background, and interference calibration measurements (especially the interference of the Th M line family on UMb). Complex REE bearing phases such as monazite, zircon, and allanite have particularly complex interference issues due to multiple peak and background overlaps from elements present in the activation volume, as well as interferences from fluorescence at a distance from adjacent phases or distinct compositional domains in the same phase. Interference corrections for elements detected during boundary fluorescence are further complicated by X-ray focusing geometry considerations. Additional complications arise from the high current densities required for high spatial resolution and high count precision, such as fluctuations in internal charge distribution and peak shape changes as satellite production efficiency varies from calibration to analysis. No flawless method has yet emerged. Extreme care in interference corrections, especially where multiple and sometime mutual overlaps are present, and maximum care (and precision) in background characterization to account for interferences and curvature (e.g., WDS scan or multipoint regression), are crucial developments. Calibration curves from multiple peak and interference calibration measurements at different concentrations, and iterative software methodologies for incorporating absorption edge effects, and non-linearities in interference corrections due to peak shape changes and off-axis X-ray defocussing during boundary fluorescence at a distance, are directions with significant potential.

Photomask quality evaluation using lithography simulation and precision SEM image contour data

NASA Astrophysics Data System (ADS)

Murakawa, Tsutomu; Fukuda, Naoki; Shida, Soichi; Iwai, Toshimichi; Matsumoto, Jun; Nakamura, Takayuki; Hagiwara, Kazuyuki; Matsushita, Shohei; Hara, Daisuke; Adamov, Anthony

2012-11-01

To evaluate photomask quality, the current method uses spatial imaging by optical inspection tools. This technique at 1Xnm node has a resolution limit because small defects will be difficult to extract. To simulate the mask error-enhancement factor (MEEF) influence for aggressive OPC in 1Xnm node, wide FOV contour data and tone information are derived from high precision SEM images. For this purpose we have developed a new contour data extraction algorithm with sub-nanometer accuracy resulting in a wide Field of View (FOV) SEM image: (for example, more than 10um x 10um square). We evaluated MEEF influence of high-end photomask pattern using the wide FOV contour data of "E3630 MVM-SEMTM" and lithography simulator "TrueMaskTM DS" of D2S, Inc. As a result, we can detect the "invisible defect" as the MEEF influence using the wide FOV contour data and lithography simulator.

Efficient Boundary Extraction of BSP Solids Based on Clipping Operations.

PubMed

Wang, Charlie C L; Manocha, Dinesh

2013-01-01

We present an efficient algorithm to extract the manifold surface that approximates the boundary of a solid represented by a Binary Space Partition (BSP) tree. Our polygonization algorithm repeatedly performs clipping operations on volumetric cells that correspond to a spatial convex partition and computes the boundary by traversing the connected cells. We use point-based representations along with finite-precision arithmetic to improve the efficiency and generate the B-rep approximation of a BSP solid. The core of our polygonization method is a novel clipping algorithm that uses a set of logical operations to make it resistant to degeneracies resulting from limited precision of floating-point arithmetic. The overall BSP to B-rep conversion algorithm can accurately generate boundaries with sharp and small features, and is faster than prior methods. At the end of this paper, we use this algorithm for a few geometric processing applications including Boolean operations, model repair, and mesh reconstruction.

Gravimetric geodesy and sea surface topography studies by means of satellite-to-satellite tracking and satellite altimetry

NASA Technical Reports Server (NTRS)

Siry, J. W.

1972-01-01

A satellite-to-satellite tracking experiment is planned between ATS-F and GEOS-C with a range accuracy of 2-meters and a range rate accuracy of 0.035 centimeters per second for a 10-second integration time. This experiment is planned for 1974. It is anticipated that it will improve the spatial resolution of the satellite geoid by half an order of magnitude to about 6 degrees. Longer integration times should also permit a modest increase in the acceleration resolution. Satellite altimeter data will also be obtained by means of GEOS-C. An overall accuracy of 5-meters in altitude is the goal. The altimeter, per se, is expected to have an instrumental precision of about 2 meters, and an additional capability to observe with a precision of about 0.2 meters for limited periods.

[Value of the space perception test for evaluation of the aptitude for precision work in geodesy].

PubMed

Remlein-Mozolewska, G

1982-01-01

The visual spatial localization ability of geodesy and cartography - employers and of the pupils trained for the mentioned profession has been examined. The examination has been based on work duration and the time of its performance. A correlation between the localization ability and the precision of the hand - movements required in everyday work has been proven. The better the movement precision, the more efficient the visual spatial localization. The length of work has not been significant. The test concerned appeared to be highly useful in geodesy for qualifying workers for the posts requiring good hands efficiency.

The Use of Scale-Dependent Precision to Increase Forecast Accuracy in Earth System Modelling

NASA Astrophysics Data System (ADS)

Thornes, Tobias; Duben, Peter; Palmer, Tim

2016-04-01

At the current pace of development, it may be decades before the 'exa-scale' computers needed to resolve individual convective clouds in weather and climate models become available to forecasters, and such machines will incur very high power demands. But the resolution could be improved today by switching to more efficient, 'inexact' hardware with which variables can be represented in 'reduced precision'. Currently, all numbers in our models are represented as double-precision floating points - each requiring 64 bits of memory - to minimise rounding errors, regardless of spatial scale. Yet observational and modelling constraints mean that values of atmospheric variables are inevitably known less precisely on smaller scales, suggesting that this may be a waste of computer resources. More accurate forecasts might therefore be obtained by taking a scale-selective approach whereby the precision of variables is gradually decreased at smaller spatial scales to optimise the overall efficiency of the model. To study the effect of reducing precision to different levels on multiple spatial scales, we here introduce a new model atmosphere developed by extending the Lorenz '96 idealised system to encompass three tiers of variables - which represent large-, medium- and small-scale features - for the first time. In this chaotic but computationally tractable system, the 'true' state can be defined by explicitly resolving all three tiers. The abilities of low resolution (single-tier) double-precision models and similar-cost high resolution (two-tier) models in mixed-precision to produce accurate forecasts of this 'truth' are compared. The high resolution models outperform the low resolution ones even when small-scale variables are resolved in half-precision (16 bits). This suggests that using scale-dependent levels of precision in more complicated real-world Earth System models could allow forecasts to be made at higher resolution and with improved accuracy. If adopted, this new paradigm would represent a revolution in numerical modelling that could be of great benefit to the world.

An infrared optical pacing system for high-throughput screening of cardiac electrophysiology in human cardiomyocytes (Conference Presentation)

NASA Astrophysics Data System (ADS)

McPheeters, Matt T.; Wang, Yves T.; Laurita, Kenneth R.; Jenkins, Michael W.

2017-02-01

Cardiomyocytes derived from human induced pluripotent stem cells (hiPS-HCM) have the potential to provide individualized therapies for patients and to test drug candidates for cardiac toxicity. In order for hiPS-CM to be useful for such applications, there is a need for high-throughput technology to rapidly assess cardiac electrophysiology parameters. Here, we designed and tested a fully contactless optical mapping (OM) and optical pacing (OP) system capable of imaging and point stimulation of hiPS-CM in small wells. OM allowed us to characterize cardiac electrophysiological parameters (conduction velocity, action potential duration, etc.) using voltage-sensitive dyes with high temporal and spatial resolution over the entire well. To improve OM signal-to-noise ratio, we tested a new voltage-sensitive dye (Fluovolt) for accuracy and phototoxicity. Stimulation is essential because most electrophysiological parameters are rate dependent; however, traditional methods utilizing electrical stimulation is difficult in small wells. To overcome this limitation, we utilized OP (λ = 1464 nm) to precisely control heart rate with spatial precision without the addition of exogenous agents. We optimized OP parameters (e.g., well size, pulse width, spot size) to achieve robust pacing and minimize the threshold radiant exposure. Finally, we tested system sensitivity using Flecainide, a drug with well described action on multiple electrophysiological properties.

FOCUSR: Feature Oriented Correspondence using Spectral Regularization–A Method for Precise Surface Matching

PubMed Central

Lombaert, Herve; Grady, Leo; Polimeni, Jonathan R.; Cheriet, Farida

2013-01-01

Existing methods for surface matching are limited by the trade-off between precision and computational efficiency. Here we present an improved algorithm for dense vertex-to-vertex correspondence that uses direct matching of features defined on a surface and improves it by using spectral correspondence as a regularization. This algorithm has the speed of both feature matching and spectral matching while exhibiting greatly improved precision (distance errors of 1.4%). The method, FOCUSR, incorporates implicitly such additional features to calculate the correspondence and relies on the smoothness of the lowest-frequency harmonics of a graph Laplacian to spatially regularize the features. In its simplest form, FOCUSR is an improved spectral correspondence method that nonrigidly deforms spectral embeddings. We provide here a full realization of spectral correspondence where virtually any feature can be used as additional information using weights on graph edges, but also on graph nodes and as extra embedded coordinates. As an example, the full power of FOCUSR is demonstrated in a real case scenario with the challenging task of brain surface matching across several individuals. Our results show that combining features and regularizing them in a spectral embedding greatly improves the matching precision (to a sub-millimeter level) while performing at much greater speed than existing methods. PMID:23868776

Accuracy or precision: Implications of sample design and methodology on abundance estimation

USGS Publications Warehouse

Kowalewski, Lucas K.; Chizinski, Christopher J.; Powell, Larkin A.; Pope, Kevin L.; Pegg, Mark A.

2015-01-01

Sampling by spatially replicated counts (point-count) is an increasingly popular method of estimating population size of organisms. Challenges exist when sampling by point-count method, and it is often impractical to sample entire area of interest and impossible to detect every individual present. Ecologists encounter logistical limitations that force them to sample either few large-sample units or many small sample-units, introducing biases to sample counts. We generated a computer environment and simulated sampling scenarios to test the role of number of samples, sample unit area, number of organisms, and distribution of organisms in the estimation of population sizes using N-mixture models. Many sample units of small area provided estimates that were consistently closer to true abundance than sample scenarios with few sample units of large area. However, sample scenarios with few sample units of large area provided more precise abundance estimates than abundance estimates derived from sample scenarios with many sample units of small area. It is important to consider accuracy and precision of abundance estimates during the sample design process with study goals and objectives fully recognized, although and with consequence, consideration of accuracy and precision of abundance estimates is often an afterthought that occurs during the data analysis process.

A Fixed-Precision Sequential Sampling Plan for the Potato Tuberworm Moth, Phthorimaea operculella Zeller (Lepidoptera: Gelechidae), on Potato Cultivars.

PubMed

Shahbi, M; Rajabpour, A

2017-08-01

Phthorimaea operculella Zeller is an important pest of potato in Iran. Spatial distribution and fixed-precision sequential sampling for population estimation of the pest on two potato cultivars, Arinda ® and Sante ® , were studied in two separate potato fields during two growing seasons (2013-2014 and 2014-2015). Spatial distribution was investigated by Taylor's power law and Iwao's patchiness. Results showed that the spatial distribution of eggs and larvae was random. In contrast to Iwao's patchiness, Taylor's power law provided a highly significant relationship between variance and mean density. Therefore, fixed-precision sequential sampling plan was developed by Green's model at two precision levels of 0.25 and 0.1. The optimum sample size on Arinda ® and Sante ® cultivars at precision level of 0.25 ranged from 151 to 813 and 149 to 802 leaves, respectively. At 0.1 precision level, the sample sizes varied from 5083 to 1054 and 5100 to 1050 leaves for Arinda ® and Sante ® cultivars, respectively. Therefore, the optimum sample sizes for the cultivars, with different resistance levels, were not significantly different. According to the calculated stop lines, the sampling must be continued until cumulative number of eggs + larvae reached to 15-16 or 96-101 individuals at precision levels of 0.25 or 0.1, respectively. The performance of the sampling plan was validated by resampling analysis using resampling for validation of sampling plans software. The sampling plant provided in this study can be used to obtain a rapid estimate of the pest density with minimal effort.

Trap configuration and spacing influences parameter estimates in spatial capture-recapture models

USGS Publications Warehouse

Sun, Catherine C.; Fuller, Angela K.; Royle, J. Andrew

2014-01-01

An increasing number of studies employ spatial capture-recapture models to estimate population size, but there has been limited research on how different spatial sampling designs and trap configurations influence parameter estimators. Spatial capture-recapture models provide an advantage over non-spatial models by explicitly accounting for heterogeneous detection probabilities among individuals that arise due to the spatial organization of individuals relative to sampling devices. We simulated black bear (Ursus americanus) populations and spatial capture-recapture data to evaluate the influence of trap configuration and trap spacing on estimates of population size and a spatial scale parameter, sigma, that relates to home range size. We varied detection probability and home range size, and considered three trap configurations common to large-mammal mark-recapture studies: regular spacing, clustered, and a temporal sequence of different cluster configurations (i.e., trap relocation). We explored trap spacing and number of traps per cluster by varying the number of traps. The clustered arrangement performed well when detection rates were low, and provides for easier field implementation than the sequential trap arrangement. However, performance differences between trap configurations diminished as home range size increased. Our simulations suggest it is important to consider trap spacing relative to home range sizes, with traps ideally spaced no more than twice the spatial scale parameter. While spatial capture-recapture models can accommodate different sampling designs and still estimate parameters with accuracy and precision, our simulations demonstrate that aspects of sampling design, namely trap configuration and spacing, must consider study area size, ranges of individual movement, and home range sizes in the study population.

Acoustic Observation of Living Organisms Reveals the Upper Limit of the Oxygen Minimum Zone

PubMed Central

Bertrand, Arnaud; Ballón, Michael; Chaigneau, Alexis

2010-01-01

Background Oxygen minimum zones (OMZs) are expanding in the World Ocean as a result of climate change and direct anthropogenic influence. OMZ expansion greatly affects biogeochemical processes and marine life, especially by constraining the vertical habitat of most marine organisms. Currently, monitoring the variability of the upper limit of the OMZs relies on time intensive sampling protocols, causing poor spatial resolution. Methodology/Principal Findings Using routine underwater acoustic observations of the vertical distribution of marine organisms, we propose a new method that allows determination of the upper limit of the OMZ with a high precision. Applied in the eastern South-Pacific, this original sampling technique provides high-resolution information on the depth of the upper OMZ allowing documentation of mesoscale and submesoscale features (e.g., eddies and filaments) that structure the upper ocean and the marine ecosystems. We also use this information to estimate the habitable volume for the world's most exploited fish, the Peruvian anchovy (Engraulis ringens). Conclusions/Significance This opportunistic method could be implemented on any vessel geared with multi-frequency echosounders to perform comprehensive high-resolution monitoring of the upper limit of the OMZ. Our approach is a novel way of studying the impact of physical processes on marine life and extracting valid information about the pelagic habitat and its spatial structure, a crucial aspect of Ecosystem-based Fisheries Management in the current context of climate change. PMID:20442791

Orbit error characteristic and distribution of TLE using CHAMP orbit data

NASA Astrophysics Data System (ADS)

Xu, Xiao-li; Xiong, Yong-qing

2018-02-01

Space object orbital covariance data is required for collision risk assessments, but publicly accessible two line element (TLE) data does not provide orbital error information. This paper compared historical TLE data and GPS precision ephemerides of CHAMP to assess TLE orbit accuracy from 2002 to 2008, inclusive. TLE error spatial variations with longitude and latitude were calculated to analyze error characteristics and distribution. The results indicate that TLE orbit data are systematically biased from the limited SGP4 model. The biases can reach the level of kilometers, and the sign and magnitude are correlate significantly with longitude.

Cryogenic colocalization microscopy for nanometer-distance measurements.

PubMed

Weisenburger, Siegfried; Jing, Bo; Hänni, Dominik; Reymond, Luc; Schuler, Benjamin; Renn, Alois; Sandoghdar, Vahid

2014-03-17

The main limiting factor in spatial resolution of localization microscopy is the number of detected photons. Recently we showed that cryogenic measurements improve the photostability of fluorophores, giving access to Angstrom precision in localization of single molecules. Here, we extend this method to colocalize two fluorophores attached to well-defined positions of a double-stranded DNA. By measuring the separations of the fluorophore pairs prepared at different design positions, we verify the feasibility of cryogenic distance measurement with sub-nanometer accuracy. We discuss the important challenges of our method as well as its potential for further improvement and various applications.

A High Spatial Resolution Depth Sensing Method Based on Binocular Structured Light

PubMed Central

Yao, Huimin; Ge, Chenyang; Xue, Jianru; Zheng, Nanning

2017-01-01

Depth information has been used in many fields because of its low cost and easy availability, since the Microsoft Kinect was released. However, the Kinect and Kinect-like RGB-D sensors show limited performance in certain applications and place high demands on accuracy and robustness of depth information. In this paper, we propose a depth sensing system that contains a laser projector similar to that used in the Kinect, and two infrared cameras located on both sides of the laser projector, to obtain higher spatial resolution depth information. We apply the block-matching algorithm to estimate the disparity. To improve the spatial resolution, we reduce the size of matching blocks, but smaller matching blocks generate lower matching precision. To address this problem, we combine two matching modes (binocular mode and monocular mode) in the disparity estimation process. Experimental results show that our method can obtain higher spatial resolution depth without loss of the quality of the range image, compared with the Kinect. Furthermore, our algorithm is implemented on a low-cost hardware platform, and the system can support the resolution of 1280 × 960, and up to a speed of 60 frames per second, for depth image sequences. PMID:28397759

Investigating MAI's Precision: Single Interferogram and Time Series Filtering

NASA Astrophysics Data System (ADS)

Bechor Ben Dov, N.; Herring, T.

2010-12-01

Multiple aperture InSAR (MAI) is a technique to obtain along-track displacements from InSAR phase data. Because InSAR measurements are insensitive to along-track displacements, it is only possible to retrieve them using none-interferometric approaches, either pixel-offset tracking or using data from different orbital configurations and assuming continuity/ displacement model. These approaches are limited by precision and data acquisition conflicts, respectively. MAI is promising in this respect as its precision is better than the former and its data is available whether additional acquisitions are there or not. Here we study the MAI noise and develop a filter to reduce it. We test the filtering with empirical noise and simulated signal data. Below we describe the filtered results single interferogram precision, and a Kalman filter approach for MAI time series. We use 14 interferograms taken over the larger Los Angeles/San Gabrial Mountains area in CA. The interferograms include a variety of decorrelation sources, both terrain-related (topographic variations, vegetation and agriculture), and imaging-related (spatial and temporal baselines of 200-500m and 1-12 months, respectively). Most of the pixels are in the low to average coherence range (below 0.7). The data were collected by ESA and made available by the WInSAR consortium. We assume the data contain “zero” along-track signal (less then the theoretical 4 cm for our coherence range), and use the images as 14 dependent realizations of the MAI noise. We find a wide distribution of phase values σ = 2-3 radians (wrapped). We superimpose a signal on our MAI noise interferograms using along-track displacement (-88 - 143 cm) calculated for the 1812 Wrightwood earthquake. To analyze single MAI interferograms, we design an iterative quantile-based filter and test it on the noise+signal MAI interferograms. The residuals reveal the following MAI noise characteristics: (1) a constant noise term, up to 90 cm (2) a displacement gradient term, up to 0.75cm/km (3) a coherence dependent root residuals sum of squares (RRSS), down to 5 cm at 0.8 coherence In the figure we present two measures of the MAI rmse. Prior to phase gradient correction the RRSS follows the circled line. With the correction, the RRSS follows the solid line. We next evaluate MAI's precision given a time series. We use a Kalman Filter to estimate the spatially and temporally correlated components of the MAI data. We reference the displacements to a given area in the interferograms, weight the data with coherence, and model the reminder terms of the spatially correlated noise as a quadratic phase gradient across the image. The results (not displayed) again vary with coherence. MAI single interferogram precision

Precise FIA plot registration using field and dense LIDAR data

Treesearch

Demetrios Gatziolis

2009-01-01

Precise registration of forest inventory and analysis (FIA) plots is a prerequisite for an effective fusion of field data with ancillary spatial information, which is an approach commonly employed in the mapping of various forest parameters. Although the adoption of Global Positioning System technology has improved the precision of plot coordinates obtained during...

SWOT: A high-resolution wide-swath altimetry mission for oceanography and hydrology

NASA Astrophysics Data System (ADS)

Morrow, Rosemary; Fu, Lee-Lueng; Rodriguez, Ernesto

2013-04-01

A new satellite mission called Surface Water and Ocean Topography (SWOT) has been developed jointly by the U.S. National Aeronautics and Space Administration and France's Centre National d'Etudes Spatiales. Based on the success of nadir-looking altimetry missions in the past, SWOT will use the technique of radar interferometry to make wide-swath altimetric measurements of the elevation of surface water on land and the ocean's surface topography. The new measurements will provide information on the changing ocean currents that are key to the prediction of climate change, as well as the shifting fresh water resources resulting from climate change. Conventional satellite altimetry has revolutionized oceanography by providing nearly two decades' worth of global measurements of ocean surface topography. However, the noise level of radar altimeters limits the along-track spatial resolution to 50-100 km over the oceans. The large spacing between the satellite ground tracks limits the resolution of 2D gridded data to 200 km. Yet most of the kinetic energy of ocean circulation takes place at the scales unresolved by conventional altimetry. About 50% of the vertical transfer of heat and chemical properties of the ocean (e.g., dissolved CO2 and nutrients) is also accomplished by processes at these scales. SWOT observations will provide the critical new information at these scales for developing and testing ocean models that are designed for predicting future climate change. SWOT measurements will be in Ka band (~35 GHZ), chosen for the radar to achieve high precision with a much shorter inteferometry baseline of 10 m. Small look angles (~ 4 degrees) are required to minimize elevation errors, which limits the swath width to 120 km. An orbit with inclination of 78 degrees and 22 day repeat period was chosen for gapless coverage and good tidal aliasing properties. With this configuration, SWOT is expected to achieve 1 cm precision at 1 km x 1 km pixels over the ocean and 10 cm precision over 50 m x 50 m pixels over land waters. This presentation will be in two parts. Firstly we will give a brief overview of the SWOT mission and its sampling characteristics. We will then introduce a number of recent scientific results on our present understanding of ocean topography and surface geostropic velocities at mesoscales and sub-mesoscales, results which have been inspired by the upcoming SWOT measurements.

Privacy Protection Versus Cluster Detection in Spatial Epidemiology

PubMed Central

Olson, Karen L.; Grannis, Shaun J.; Mandl, Kenneth D.

2006-01-01

Objectives. Patient data that includes precise locations can reveal patients’ identities, whereas data aggregated into administrative regions may preserve privacy and confidentiality. We investigated the effect of varying degrees of address precision (exact latitude and longitude vs the center points of zip code or census tracts) on detection of spatial clusters of cases. Methods. We simulated disease outbreaks by adding supplementary spatially clustered emergency department visits to authentic hospital emergency department syndromic surveillance data. We identified clusters with a spatial scan statistic and evaluated detection rate and accuracy. Results. More clusters were identified, and clusters were more accurately detected, when exact locations were used. That is, these clusters contained at least half of the simulated points and involved few additional emergency department visits. These results were especially apparent when the synthetic clustered points crossed administrative boundaries and fell into multiple zip code or census tracts. Conclusions. The spatial cluster detection algorithm performed better when addresses were analyzed as exact locations than when they were analyzed as center points of zip code or census tracts, particularly when the clustered points crossed administrative boundaries. Use of precise addresses offers improved performance, but this practice must be weighed against privacy concerns in the establishment of public health data exchange policies. PMID:17018828

Human short-term spatial memory: precision predicts capacity.

PubMed

Banta Lavenex, Pamela; Boujon, Valérie; Ndarugendamwo, Angélique; Lavenex, Pierre

2015-03-01

Here, we aimed to determine the capacity of human short-term memory for allocentric spatial information in a real-world setting. Young adults were tested on their ability to learn, on a trial-unique basis, and remember over a 1-min interval the location(s) of 1, 3, 5, or 7 illuminating pads, among 23 pads distributed in a 4m×4m arena surrounded by curtains on three sides. Participants had to walk to and touch the pads with their foot to illuminate the goal locations. In contrast to the predictions from classical slot models of working memory capacity limited to a fixed number of items, i.e., Miller's magical number 7 or Cowan's magical number 4, we found that the number of visited locations to find the goals was consistently about 1.6 times the number of goals, whereas the number of correct choices before erring and the number of errorless trials varied with memory load even when memory load was below the hypothetical memory capacity. In contrast to resource models of visual working memory, we found no evidence that memory resources were evenly distributed among unlimited numbers of items to be remembered. Instead, we found that memory for even one individual location was imprecise, and that memory performance for one location could be used to predict memory performance for multiple locations. Our findings are consistent with a theoretical model suggesting that the precision of the memory for individual locations might determine the capacity of human short-term memory for spatial information. Copyright © 2015 Elsevier Inc. All rights reserved.

Fine-grained, local maps and coarse, global representations support human spatial working memory.

PubMed

Katshu, Mohammad Zia Ul Haq; d'Avossa, Giovanni

2014-01-01

While sensory processes are tuned to particular features, such as an object's specific location, color or orientation, visual working memory (vWM) is assumed to store information using representations, which generalize over a feature dimension. Additionally, current vWM models presume that different features or objects are stored independently. On the other hand, configurational effects, when observed, are supposed to mainly reflect encoding strategies. We show that the location of the target, relative to the display center and boundaries, and overall memory load influenced recall precision, indicating that, like sensory processes, capacity limited vWM resources are spatially tuned. When recalling one of three memory items the target distance from the display center was overestimated, similar to the error when only one item was memorized, but its distance from the memory items' average position was underestimated, showing that not only individual memory items' position, but also the global configuration of the memory array may be stored. Finally, presenting the non-target items at recall, consequently providing landmarks and configurational information, improved precision and accuracy of target recall. Similarly, when the non-target items were translated at recall, relative to their position in the initial display, a parallel displacement of the recalled target was observed. These findings suggest that fine-grained spatial information in vWM is represented in local maps whose resolution varies with distance from landmarks, such as the display center, while coarse representations are used to store the memory array configuration. Both these representations are updated at the time of recall.

Enhanced simulator software for image validation and interpretation for multimodal localization super-resolution fluorescence microscopy

NASA Astrophysics Data System (ADS)

Erdélyi, Miklós; Sinkó, József; Gajdos, Tamás.; Novák, Tibor

2017-02-01

Optical super-resolution techniques such as single molecule localization have become one of the most dynamically developed areas in optical microscopy. These techniques routinely provide images of fixed cells or tissues with sub-diffraction spatial resolution, and can even be applied for live cell imaging under appropriate circumstances. Localization techniques are based on the precise fitting of the point spread functions (PSF) to the measured images of stochastically excited, identical fluorescent molecules. These techniques require controlling the rate between the on, off and the bleached states, keeping the number of active fluorescent molecules at an optimum value, so their diffraction limited images can be detected separately both spatially and temporally. Because of the numerous (and sometimes unknown) parameters, the imaging system can only be handled stochastically. For example, the rotation of the dye molecules obscures the polarization dependent PSF shape, and only an averaged distribution - typically estimated by a Gaussian function - is observed. TestSTORM software was developed to generate image stacks for traditional localization microscopes, where localization meant the precise determination of the spatial position of the molecules. However, additional optical properties (polarization, spectra, etc.) of the emitted photons can be used for further monitoring the chemical and physical properties (viscosity, pH, etc.) of the local environment. The image stack generating program was upgraded by several new features, such as: multicolour, polarization dependent PSF, built-in 3D visualization, structured background. These features make the program an ideal tool for optimizing the imaging and sample preparation conditions.

Fine-Grained, Local Maps and Coarse, Global Representations Support Human Spatial Working Memory

PubMed Central

Katshu, Mohammad Zia Ul Haq; d'Avossa, Giovanni

2014-01-01

While sensory processes are tuned to particular features, such as an object's specific location, color or orientation, visual working memory (vWM) is assumed to store information using representations, which generalize over a feature dimension. Additionally, current vWM models presume that different features or objects are stored independently. On the other hand, configurational effects, when observed, are supposed to mainly reflect encoding strategies. We show that the location of the target, relative to the display center and boundaries, and overall memory load influenced recall precision, indicating that, like sensory processes, capacity limited vWM resources are spatially tuned. When recalling one of three memory items the target distance from the display center was overestimated, similar to the error when only one item was memorized, but its distance from the memory items' average position was underestimated, showing that not only individual memory items' position, but also the global configuration of the memory array may be stored. Finally, presenting the non-target items at recall, consequently providing landmarks and configurational information, improved precision and accuracy of target recall. Similarly, when the non-target items were translated at recall, relative to their position in the initial display, a parallel displacement of the recalled target was observed. These findings suggest that fine-grained spatial information in vWM is represented in local maps whose resolution varies with distance from landmarks, such as the display center, while coarse representations are used to store the memory array configuration. Both these representations are updated at the time of recall. PMID:25259601

Distributed fiber-optic temperature sensing for hydrologic systems

NASA Astrophysics Data System (ADS)

Selker, John S.; ThéVenaz, Luc; Huwald, Hendrik; Mallet, Alfred; Luxemburg, Wim; van de Giesen, Nick; Stejskal, Martin; Zeman, Josef; Westhoff, Martijn; Parlange, Marc B.

2006-12-01

Instruments for distributed fiber-optic measurement of temperature are now available with temperature resolution of 0.01°C and spatial resolution of 1 m with temporal resolution of fractions of a minute along standard fiber-optic cables used for communication with lengths of up to 30,000 m. We discuss the spectrum of fiber-optic tools that may be employed to make these measurements, illuminating the potential and limitations of these methods in hydrologic science. There are trade-offs between precision in temperature, temporal resolution, and spatial resolution, following the square root of the number of measurements made; thus brief, short measurements are less precise than measurements taken over longer spans in time and space. Five illustrative applications demonstrate configurations where the distributed temperature sensing (DTS) approach could be used: (1) lake bottom temperatures using existing communication cables, (2) temperature profile with depth in a 1400 m deep decommissioned mine shaft, (3) air-snow interface temperature profile above a snow-covered glacier, (4) air-water interfacial temperature in a lake, and (5) temperature distribution along a first-order stream. In examples 3 and 4 it is shown that by winding the fiber around a cylinder, vertical spatial resolution of millimeters can be achieved. These tools may be of exceptional utility in observing a broad range of hydrologic processes, including evaporation, infiltration, limnology, and the local and overall energy budget spanning scales from 0.003 to 30,000 m. This range of scales corresponds well with many of the areas of greatest opportunity for discovery in hydrologic science.

Stochastic Downscaling of Digital Elevation Models

NASA Astrophysics Data System (ADS)

Rasera, Luiz Gustavo; Mariethoz, Gregoire; Lane, Stuart N.

2016-04-01

High-resolution digital elevation models (HR-DEMs) are extremely important for the understanding of small-scale geomorphic processes in Alpine environments. In the last decade, remote sensing techniques have experienced a major technological evolution, enabling fast and precise acquisition of HR-DEMs. However, sensors designed to measure elevation data still feature different spatial resolution and coverage capabilities. Terrestrial altimetry allows the acquisition of HR-DEMs with centimeter to millimeter-level precision, but only within small spatial extents and often with dead ground problems. Conversely, satellite radiometric sensors are able to gather elevation measurements over large areas but with limited spatial resolution. In the present study, we propose an algorithm to downscale low-resolution satellite-based DEMs using topographic patterns extracted from HR-DEMs derived for example from ground-based and airborne altimetry. The method consists of a multiple-point geostatistical simulation technique able to generate high-resolution elevation data from low-resolution digital elevation models (LR-DEMs). Initially, two collocated DEMs with different spatial resolutions serve as an input to construct a database of topographic patterns, which is also used to infer the statistical relationships between the two scales. High-resolution elevation patterns are then retrieved from the database to downscale a LR-DEM through a stochastic simulation process. The output of the simulations are multiple equally probable DEMs with higher spatial resolution that also depict the large-scale geomorphic structures present in the original LR-DEM. As these multiple models reflect the uncertainty related to the downscaling, they can be employed to quantify the uncertainty of phenomena that are dependent on fine topography, such as catchment hydrological processes. The proposed methodology is illustrated for a case study in the Swiss Alps. A swissALTI3D HR-DEM (with 5 m resolution) and a SRTM-derived LR-DEM from the Western Alps are used to downscale a SRTM-based LR-DEM from the eastern part of the Alps. The results show that the method is capable of generating multiple high-resolution synthetic DEMs that reproduce the spatial structure and statistics of the original DEM.

Mobile Platforms for Continuous Spatial Measurements of Urban Trace Gases and Criteria Pollutants

NASA Astrophysics Data System (ADS)

Fasoli, B.; Mitchell, L.; Bares, R.; Crosman, E.; Bush, S. E.; Horel, J.; Lin, J. C.; Bowling, D. R.; Ehleringer, J. R.

2015-12-01

Surface-based observations of atmospheric trace gases and criteria pollutants provide critical data on how emissions and pollutant concentrations vary over time. However, traditional stationary measurement sites only quantify concentrations at a single point in space, limiting our ability to understand spatial patterns. Using trace gas instrumentation capable of making continuous high-frequency (~1s) measurements, we have developed mobile platforms to complement stationary observation sites in order to better constrain the heterogeneity and complexities of urban emissions. These compact trace gas and criteria pollutant measurement systems are capable of precisely measuring CO2, CH4 PM2.5, O3, NOx, and several meteorological parameters on TRAX, Salt Lake City's light-rail system, and in a van-based mobile laboratory. Using case study observations, we discuss mobile measurement methodologies and the practical applications of mobile trace gas sampling platforms.

Novel method for fog monitoring using cellular networks infrastructures

NASA Astrophysics Data System (ADS)

David, N.; Alpert, P.; Messer, H.

2012-08-01

A major detrimental effect of fog is visibility limitation which can result in serious transportation accidents, traffic delays and therefore economic damage. Existing monitoring techniques including satellites, transmissometers and human observers - suffer from low spatial resolution, high cost or lack of precision when measuring near ground level. Here we show a novel technique for fog monitoring using wireless communication systems. Communication networks widely deploy commercial microwave links across the terrain at ground level. Operating at frequencies of tens of GHz they are affected by fog and are, effectively, an existing, spatially world-wide distributed sensor network that can provide crucial information about fog concentration and visibility. Fog monitoring potential is demonstrated for a heavy fog event that took place in Israel. The correlation between transmissomters and human eye observations to the visibility estimates from the nearby microwave links was found to be 0.53 and 0.61, respectively. These values indicate the high potential of the proposed method.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Yu; Li, Shunbo; Wen, Weijia, E-mail: phwen@ust.hk

A local area temperature monitor is important for precise control of chemical and biological processes in microfluidics. In this work, we developed a facile method to realize micron spatial resolution of temperature mapping in a microfluidic channel quickly and cost effectively. Based on the temperature dependent fluorescence emission of NaYF{sub 4}:Yb{sup 3+}, Er{sup 3+} upconversion nanoparticles (UCNPs) under near-infrared irradiation, ratio-metric imaging of UCNPs doped polydimethylsiloxane can map detailed temperature distribution in the channel. Unlike some reported strategies that utilize temperature sensitive organic dye (such as Rhodamine) to achieve thermal sensing, our method is highly chemically inert and physically stablemore » without any performance degradation in long term operation. Moreover, this method can be easily scaled up or down, since the spatial and temperature resolution is determined by an optical imaging system. Our method supplied a simple and efficient solution for temperature mapping on a heterogeneous surface where usage of an infrared thermal camera was limited.« less

Quantitative fluorescence imaging of protein diffusion and interaction in living cells.

PubMed

Capoulade, Jérémie; Wachsmuth, Malte; Hufnagel, Lars; Knop, Michael

2011-08-07

Diffusion processes and local dynamic equilibria inside cells lead to nonuniform spatial distributions of molecules, which are essential for processes such as nuclear organization and signaling in cell division, differentiation and migration. To understand these mechanisms, spatially resolved quantitative measurements of protein abundance, mobilities and interactions are needed, but current methods have limited capabilities to study dynamic parameters. Here we describe a microscope based on light-sheet illumination that allows massively parallel fluorescence correlation spectroscopy (FCS) measurements and use it to visualize the diffusion and interactions of proteins in mammalian cells and in isolated fly tissue. Imaging the mobility of heterochromatin protein HP1α (ref. 4) in cell nuclei we could provide high-resolution diffusion maps that reveal euchromatin areas with heterochromatin-like HP1α-chromatin interactions. We expect that FCS imaging will become a useful method for the precise characterization of cellular reaction-diffusion processes.

Spatial and Time Coincidence Detection of the Decay Chain of Short-Lived Radioactive Nuclei

DOE Office of Scientific and Technical Information (OSTI.GOV)

Granja, Carlos; Jakubek, Jan; Platkevic, Michal

The quantum counting position sensitive pixel detector Timepix with per-pixel energy and time resolution enables to detect radioactive ions and register the consecutive decay chain by simultaneous position-and time-correlation. This spatial and timing coincidence technique in the same sensor is demonstrated by the registration of the decay chain {sup 8}He{yields}{sup {beta} 8}Li and {sup 8}Li{yields}{sup {beta}-} {sup 8}Be{yields}{alpha}+{alpha} and by the measurement of the {beta} decay half-lives. Radioactive ions, selectively obtained from the Lohengrin fission fragment spectrometer installed at the High Flux Reactor of the ILL Grenoble, are delivered to the Timepix silicon sensor where decays of the implanted ionsmore » and daughter nuclei are registered and visualized. We measure decay lifetimes in the range {>=}{mu}s with precision limited just by counting statistics.« less

Decomposition and control of complex systems - Application to the analysis and control of industrial and economic systems /energy production/ with limited supplies

NASA Astrophysics Data System (ADS)

de Coligny, M.

Optimized control strategies are developed for industrial installations where many variables of energy supply and storage are involved, with a particular focus on characteristics of a solar central tower power plant. It is shown that optimal regulation resides in controlling all disturbances which occur in a limited domain of the entire system, using robust control schemes. Choosing a command is then dependent on defining precise operational limits as constraints on the machines' performances. Attention is given to the development of variational principles used for the elements of the command logic. Particular consideration is given to a limited supply in storage in spatial and temporal terms. Commands for alterations in functions are then available on-line, and discontinuities are not a feature of the control system. The strategy is applied to the case of a field of heliostats and a central tower themal receiver showing that management is possible on the basis of a sliding horizon.

3D Tree Dimensionality Assessment Using Photogrammetry and Small Unmanned Aerial Vehicles

PubMed Central

2015-01-01

Detailed, precise, three-dimensional (3D) representations of individual trees are a prerequisite for an accurate assessment of tree competition, growth, and morphological plasticity. Until recently, our ability to measure the dimensionality, spatial arrangement, shape of trees, and shape of tree components with precision has been constrained by technological and logistical limitations and cost. Traditional methods of forest biometrics provide only partial measurements and are labor intensive. Active remote technologies such as LiDAR operated from airborne platforms provide only partial crown reconstructions. The use of terrestrial LiDAR is laborious, has portability limitations and high cost. In this work we capitalized on recent improvements in the capabilities and availability of small unmanned aerial vehicles (UAVs), light and inexpensive cameras, and developed an affordable method for obtaining precise and comprehensive 3D models of trees and small groups of trees. The method employs slow-moving UAVs that acquire images along predefined trajectories near and around targeted trees, and computer vision-based approaches that process the images to obtain detailed tree reconstructions. After we confirmed the potential of the methodology via simulation we evaluated several UAV platforms, strategies for image acquisition, and image processing algorithms. We present an original, step-by-step workflow which utilizes open source programs and original software. We anticipate that future development and applications of our method will improve our understanding of forest self-organization emerging from the competition among trees, and will lead to a refined generation of individual-tree-based forest models. PMID:26393926

3D Tree Dimensionality Assessment Using Photogrammetry and Small Unmanned Aerial Vehicles.

PubMed

Gatziolis, Demetrios; Lienard, Jean F; Vogs, Andre; Strigul, Nikolay S

2015-01-01

Detailed, precise, three-dimensional (3D) representations of individual trees are a prerequisite for an accurate assessment of tree competition, growth, and morphological plasticity. Until recently, our ability to measure the dimensionality, spatial arrangement, shape of trees, and shape of tree components with precision has been constrained by technological and logistical limitations and cost. Traditional methods of forest biometrics provide only partial measurements and are labor intensive. Active remote technologies such as LiDAR operated from airborne platforms provide only partial crown reconstructions. The use of terrestrial LiDAR is laborious, has portability limitations and high cost. In this work we capitalized on recent improvements in the capabilities and availability of small unmanned aerial vehicles (UAVs), light and inexpensive cameras, and developed an affordable method for obtaining precise and comprehensive 3D models of trees and small groups of trees. The method employs slow-moving UAVs that acquire images along predefined trajectories near and around targeted trees, and computer vision-based approaches that process the images to obtain detailed tree reconstructions. After we confirmed the potential of the methodology via simulation we evaluated several UAV platforms, strategies for image acquisition, and image processing algorithms. We present an original, step-by-step workflow which utilizes open source programs and original software. We anticipate that future development and applications of our method will improve our understanding of forest self-organization emerging from the competition among trees, and will lead to a refined generation of individual-tree-based forest models.

Implementation of a channelized Hotelling observer model to assess image quality of x-ray angiography systems

PubMed Central

Favazza, Christopher P.; Fetterly, Kenneth A.; Hangiandreou, Nicholas J.; Leng, Shuai; Schueler, Beth A.

2015-01-01

Abstract. Evaluation of flat-panel angiography equipment through conventional image quality metrics is limited by the scope of standard spatial-domain image quality metric(s), such as contrast-to-noise ratio and spatial resolution, or by restricted access to appropriate data to calculate Fourier domain measurements, such as modulation transfer function, noise power spectrum, and detective quantum efficiency. Observer models have been shown capable of overcoming these limitations and are able to comprehensively evaluate medical-imaging systems. We present a spatial domain-based channelized Hotelling observer model to calculate the detectability index (DI) of our different sized disks and compare the performance of different imaging conditions and angiography systems. When appropriate, changes in DIs were compared to expectations based on the classical Rose model of signal detection to assess linearity of the model with quantum signal-to-noise ratio (SNR) theory. For these experiments, the estimated uncertainty of the DIs was less than 3%, allowing for precise comparison of imaging systems or conditions. For most experimental variables, DI changes were linear with expectations based on quantum SNR theory. DIs calculated for the smallest objects demonstrated nonlinearity with quantum SNR theory due to system blur. Two angiography systems with different detector element sizes were shown to perform similarly across the majority of the detection tasks. PMID:26158086

Detection of trace nitric oxide concentrations using 1-D laser-induced fluorescence imaging

NASA Astrophysics Data System (ADS)

Yoo, J.; Lee, T.; Jeffries, J. B.; Hanson, R. K.

2008-06-01

Spectrally resolved laser-induced fluorescence (LIF) with one-dimensional spatial imaging was investigated as a technique for detection of trace concentrations of nitric oxide (NO) in high-pressure flames. Experiments were performed in the burnt gases of premixed methane/argon/oxygen flames with seeded NO (15 to 50 ppm), pressures of 10 to 60 bar, and an equivalence ratio of 0.9. LIF signals were dispersed with a spectrometer and recorded on a 2-D intensified CCD array yielding both spectral resolution and 1-D spatial resolution. This method allows isolation of NO-LIF from interference signals due to alternative species (mainly hot O2 and CO2) while providing spatial resolution along the line of the excitation laser. A fast data analysis strategy was developed to enable pulse-by-pulse NO concentration measurements from these images. Statistical analyses as a function of laser energy of these single-shot data were used to determine the detection limits for NO concentration as well as the measurement precision. Extrapolating these results to pulse energies of ˜ 16 mJ/pulse yielded a predicted detection limit of ˜ 10 ppm for pressures up to 60 bar. Quantitative 1-D LIF measurements were performed in CH4/air flames to validate capability for detection of nascent NO in flames at 10-60 bar.

Mapping spatial patterns with morphological image processing

Treesearch

Peter Vogt; Kurt H. Riitters; Christine Estreguil; Jacek Kozak; Timothy G. Wade; James D. Wickham

2006-01-01

We use morphological image processing for classifying spatial patterns at the pixel level on binary land-cover maps. Land-cover pattern is classified as 'perforated,' 'edge,' 'patch,' and 'core' with higher spatial precision and thematic accuracy compared to a previous approach based on image convolution, while retaining the...

Evaluation of a low-cost optical particle counter (Alphasense OPC-N2) for ambient air monitoring

NASA Astrophysics Data System (ADS)

Crilley, Leigh R.; Shaw, Marvin; Pound, Ryan; Kramer, Louisa J.; Price, Robin; Young, Stuart; Lewis, Alastair C.; Pope, Francis D.

2018-02-01

A fast-growing area of research is the development of low-cost sensors for measuring air pollutants. The affordability and size of low-cost particle sensors makes them an attractive option for use in experiments requiring a number of instruments such as high-density spatial mapping. However, for these low-cost sensors to be useful for these types of studies their accuracy and precision need to be quantified. We evaluated the Alphasense OPC-N2, a promising low-cost miniature optical particle counter, for monitoring ambient airborne particles at typical urban background sites in the UK. The precision of the OPC-N2 was assessed by co-locating 14 instruments at a site to investigate the variation in measured concentrations. Comparison to two different reference optical particle counters as well as a TEOM-FDMS enabled the accuracy of the OPC-N2 to be evaluated. Comparison of the OPC-N2 to the reference optical instruments shows some limitations for measuring mass concentrations of PM1, PM2.5 and PM10. The OPC-N2 demonstrated a significant positive artefact in measured particle mass during times of high ambient RH (> 85 %) and a calibration factor was developed based upon κ-Köhler theory, using average bulk particle aerosol hygroscopicity. Application of this RH correction factor resulted in the OPC-N2 measurements being within 33 % of the TEOM-FDMS, comparable to the agreement between a reference optical particle counter and the TEOM-FDMS (20 %). Inter-unit precision for the 14 OPC-N2 sensors of 22 ± 13 % for PM10 mass concentrations was observed. Overall, the OPC-N2 was found to accurately measure ambient airborne particle mass concentration provided they are (i) correctly calibrated and (ii) corrected for ambient RH. The level of precision demonstrated between multiple OPC-N2s suggests that they would be suitable devices for applications where the spatial variability in particle concentration was to be determined.

Spatial attention improves the quality of population codes in human visual cortex.

PubMed

Saproo, Sameer; Serences, John T

2010-08-01

Selective attention enables sensory input from behaviorally relevant stimuli to be processed in greater detail, so that these stimuli can more accurately influence thoughts, actions, and future goals. Attention has been shown to modulate the spiking activity of single feature-selective neurons that encode basic stimulus properties (color, orientation, etc.). However, the combined output from many such neurons is required to form stable representations of relevant objects and little empirical work has formally investigated the relationship between attentional modulations on population responses and improvements in encoding precision. Here, we used functional MRI and voxel-based feature tuning functions to show that spatial attention induces a multiplicative scaling in orientation-selective population response profiles in early visual cortex. In turn, this multiplicative scaling correlates with an improvement in encoding precision, as evidenced by a concurrent increase in the mutual information between population responses and the orientation of attended stimuli. These data therefore demonstrate how multiplicative scaling of neural responses provides at least one mechanism by which spatial attention may improve the encoding precision of population codes. Increased encoding precision in early visual areas may then enhance the speed and accuracy of perceptual decisions computed by higher-order neural mechanisms.

Active optics null test system based on a liquid crystal programmable spatial light modulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ares, Miguel; Royo, Santiago; Sergievskaya, Irina

2010-11-10

We present an active null test system adapted to test lenses and wavefronts with complex shapes and strong local deformations. This system provides greater flexibility than conventional static null tests that match only a precisely positioned, individual wavefront. The system is based on a cylindrical Shack-Hartmann wavefront sensor, a commercial liquid crystal programmable phase modulator (PPM), which acts as the active null corrector, enabling the compensation of large strokes with high fidelity in a single iteration, and a spatial filter to remove unmodulated light when steep phase changes are compensated. We have evaluated the PPM's phase response at 635 nmmore » and checked its performance by measuring its capability to generate different amounts of defocus aberration, finding root mean squared errors below {lambda}/18 for spherical wavefronts with peak-to-valley heights of up to 78.7{lambda}, which stands as the limit from which diffractive artifacts created by the PPM have been found to be critical under no spatial filtering. Results of a null test for a complex lens (an ophthalmic customized progressive addition lens) are presented and discussed.« less

High-precision robotic microcontact printing (R-μCP) utilizing a vision guided selectively compliant articulated robotic arm.

PubMed

McNulty, Jason D; Klann, Tyler; Sha, Jin; Salick, Max; Knight, Gavin T; Turng, Lih-Sheng; Ashton, Randolph S

2014-06-07

Increased realization of the spatial heterogeneity found within in vivo tissue microenvironments has prompted the desire to engineer similar complexities into in vitro culture substrates. Microcontact printing (μCP) is a versatile technique for engineering such complexities onto cell culture substrates because it permits microscale control of the relative positioning of molecules and cells over large surface areas. However, challenges associated with precisely aligning and superimposing multiple μCP steps severely limits the extent of substrate modification that can be achieved using this method. Thus, we investigated the feasibility of using a vision guided selectively compliant articulated robotic arm (SCARA) for μCP applications. SCARAs are routinely used to perform high precision, repetitive tasks in manufacturing, and even low-end models are capable of achieving microscale precision. Here, we present customization of a SCARA to execute robotic-μCP (R-μCP) onto gold-coated microscope coverslips. The system not only possesses the ability to align multiple polydimethylsiloxane (PDMS) stamps but also has the capability to do so even after the substrates have been removed, reacted to graft polymer brushes, and replaced back into the system. Plus, non-biased computerized analysis shows that the system performs such sequential patterning with <10 μm precision and accuracy, which is equivalent to the repeatability specifications of the employed SCARA model. R-μCP should facilitate the engineering of complex in vivo-like complexities onto culture substrates and their integration with microfluidic devices.

Submillisecond Optogenetic Control of Neuronal Firing with Two-Photon Holographic Photoactivation of Chronos

PubMed Central

Ronzitti, Emiliano; Conti, Rossella; Zampini, Valeria; Tanese, Dimitrii; Klapoetke, Nathan; Boyden, Edward S.; Papagiakoumou, Eirini

2017-01-01

Optogenetic neuronal network manipulation promises to unravel a long-standing mystery in neuroscience: how does microcircuit activity relate causally to behavioral and pathological states? The challenge to evoke spikes with high spatial and temporal complexity necessitates further joint development of light-delivery approaches and custom opsins. Two-photon (2P) light-targeting strategies demonstrated in-depth generation of action potentials in photosensitive neurons both in vitro and in vivo, but thus far lack the temporal precision necessary to induce precisely timed spiking events. Here, we show that efficient current integration enabled by 2P holographic amplified laser illumination of Chronos, a highly light-sensitive and fast opsin, can evoke spikes with submillisecond precision and repeated firing up to 100 Hz in brain slices from Swiss male mice. These results pave the way for optogenetic manipulation with the spatial and temporal sophistication necessary to mimic natural microcircuit activity. SIGNIFICANCE STATEMENT To reveal causal links between neuronal activity and behavior, it is necessary to develop experimental strategies to induce spatially and temporally sophisticated perturbation of network microcircuits. Two-photon computer generated holography (2P-CGH) recently demonstrated 3D optogenetic control of selected pools of neurons with single-cell accuracy in depth in the brain. Here, we show that exciting the fast opsin Chronos with amplified laser 2P-CGH enables cellular-resolution targeting with unprecedented temporal control, driving spiking up to 100 Hz with submillisecond onset precision using low laser power densities. This system achieves a unique combination of spatial flexibility and temporal precision needed to pattern optogenetically inputs that mimic natural neuronal network activity patterns. PMID:28972125

Analysis of spatial correlation in predictive models of forest variables that use LiDAR auxiliary information

Treesearch

F. Mauro; Vicente J. Monleon; H. Temesgen; L.A. Ruiz

2017-01-01

Accounting for spatial correlation of LiDAR model errors can improve the precision of model-based estimators. To estimate spatial correlation, sample designs that provide close observations are needed, but their implementation might be prohibitively expensive. To quantify the gains obtained by accounting for the spatial correlation of model errors, we examined (

Nucleic acid-based nanoengineering: novel structures for biomedical applications

PubMed Central

Li, Hanying; LaBean, Thomas H.; Leong, Kam W.

2011-01-01

Nanoengineering exploits the interactions of materials at the nanometre scale to create functional nanostructures. It relies on the precise organization of nanomaterials to achieve unique functionality. There are no interactions more elegant than those governing nucleic acids via Watson–Crick base-pairing rules. The infinite combinations of DNA/RNA base pairs and their remarkable molecular recognition capability can give rise to interesting nanostructures that are only limited by our imagination. Over the past years, creative assembly of nucleic acids has fashioned a plethora of two-dimensional and three-dimensional nanostructures with precisely controlled size, shape and spatial functionalization. These nanostructures have been precisely patterned with molecules, proteins and gold nanoparticles for the observation of chemical reactions at the single molecule level, activation of enzymatic cascade and novel modality of photonic detection, respectively. Recently, they have also been engineered to encapsulate and release bioactive agents in a stimulus-responsive manner for therapeutic applications. The future of nucleic acid-based nanoengineering is bright and exciting. In this review, we will discuss the strategies to control the assembly of nucleic acids and highlight the recent efforts to build functional nucleic acid nanodevices for nanomedicine. PMID:23050076

Screening for Learning and Memory Mutations: A New Approach

PubMed Central

Gallistel, C. R.; King, A. P.; Daniel, A. M.; Freestone, D.; Papachristos, E. B.; Balci, F.; Kheifets, A.; Zhang, J.; Su, X.; Schiff, G.; Kourtev, H.

2010-01-01

We describe a fully automated, live-in 24/7 test environment, with experimental protocols that measure the accuracy and precision with which mice match the ratio of their expected visit durations to the ratio of the incomes obtained from two hoppers, the progress of instrumental and classical conditioning (trials-to-acquisition), the accuracy and precision of interval timing, the effect of relative probability on the choice of a timed departure target, and the accuracy and precision of memory for the times of day at which food is available. The system is compact; it obviates the handling of the mice during testing; it requires negligible amounts of experimenter/technician time; and it delivers clear and extensive results from 3 protocols within a total of 7–9 days after the mice are placed in the test environment. Only a single 24-hour period is required for the completion of first protocol (the matching protocol), which is strong test of temporal and spatial estimation and memory mechanisms. Thus, the system permits the extensive screening of many mice in a short period of time and in limited space. The software is publicly available. PMID:20352069

Optimal Audiovisual Integration in the Ventriloquism Effect But Pervasive Deficits in Unisensory Spatial Localization in Amblyopia.

PubMed

Richards, Michael D; Goltz, Herbert C; Wong, Agnes M F

2018-01-01

Classically understood as a deficit in spatial vision, amblyopia is increasingly recognized to also impair audiovisual multisensory processing. Studies to date, however, have not determined whether the audiovisual abnormalities reflect a failure of multisensory integration, or an optimal strategy in the face of unisensory impairment. We use the ventriloquism effect and the maximum-likelihood estimation (MLE) model of optimal integration to investigate integration of audiovisual spatial information in amblyopia. Participants with unilateral amblyopia (n = 14; mean age 28.8 years; 7 anisometropic, 3 strabismic, 4 mixed mechanism) and visually normal controls (n = 16, mean age 29.2 years) localized brief unimodal auditory, unimodal visual, and bimodal (audiovisual) stimuli during binocular viewing using a location discrimination task. A subset of bimodal trials involved the ventriloquism effect, an illusion in which auditory and visual stimuli originating from different locations are perceived as originating from a single location. Localization precision and bias were determined by psychometric curve fitting, and the observed parameters were compared with predictions from the MLE model. Spatial localization precision was significantly reduced in the amblyopia group compared with the control group for unimodal visual, unimodal auditory, and bimodal stimuli. Analyses of localization precision and bias for bimodal stimuli showed no significant deviations from the MLE model in either the amblyopia group or the control group. Despite pervasive deficits in localization precision for visual, auditory, and audiovisual stimuli, audiovisual integration remains intact and optimal in unilateral amblyopia.

A Self-Organizing Spatial Clustering Approach to Support Large-Scale Network RTK Systems.

PubMed

Shen, Lili; Guo, Jiming; Wang, Lei

2018-06-06

The network real-time kinematic (RTK) technique can provide centimeter-level real time positioning solutions and play a key role in geo-spatial infrastructure. With ever-increasing popularity, network RTK systems will face issues in the support of large numbers of concurrent users. In the past, high-precision positioning services were oriented towards professionals and only supported a few concurrent users. Currently, precise positioning provides a spatial foundation for artificial intelligence (AI), and countless smart devices (autonomous cars, unmanned aerial-vehicles (UAVs), robotic equipment, etc.) require precise positioning services. Therefore, the development of approaches to support large-scale network RTK systems is urgent. In this study, we proposed a self-organizing spatial clustering (SOSC) approach which automatically clusters online users to reduce the computational load on the network RTK system server side. The experimental results indicate that both the SOSC algorithm and the grid algorithm can reduce the computational load efficiently, while the SOSC algorithm gives a more elastic and adaptive clustering solution with different datasets. The SOSC algorithm determines the cluster number and the mean distance to cluster center (MDTCC) according to the data set, while the grid approaches are all predefined. The side-effects of clustering algorithms on the user side are analyzed with real global navigation satellite system (GNSS) data sets. The experimental results indicate that 10 km can be safely used as the cluster radius threshold for the SOSC algorithm without significantly reducing the positioning precision and reliability on the user side.

Influence of local topography on precision irrigation management

USDA-ARS?s Scientific Manuscript database

Precision irrigation management is currently accomplished using spatial information about soil properties through soil series maps or electrical conductivity (EC measurements. Crop yield, however, is consistently influenced by local topography, both in rain-fed and irrigated environments. Utilizing ...

Counting or Chunking?

PubMed Central

Spotorno, Nicola; McMillan, Corey T.; Powers, John P.; Clark, Robin; Grossman, Murray

2014-01-01

A growing amount of empirical data is showing that the ability to manipulate quantities in a precise and efficient fashion is rooted in cognitive mechanisms devoted to specific aspects of numbers processing. The Analog number system (ANS) has a reasonable representation of quantities up to about 4, and represents larger quantities on the basis of a numerical ratio between quantities. In order to represent the precise cardinality of a number, the ANS may be supported by external algorithms such as language, leading to a “Precise Number System”. In the setting of limited language, other number-related systems can appear. For example the Parallel Individuation system (PIS) supports a “chunking mechanism” that clusters units of larger numerosities into smaller subsets. In the present study we investigated number processing in non-aphasic patients with Corticobasal Syndrome (CBS) and Posterior Cortical Atrophy (PCA), two neurodegenerative conditions that are associated with progressive parietal atrophy. The present study investigated these number systems in CBS and PCA by assessing the property of the ANS associated with smaller and larger numerosities, and the chunking property of the PIS. The results revealed that CBS/PCA patients are impaired in simple calculations (e.g., addition and subtraction) and that their performance strongly correlates with the size of the numbers involved in these calculations, revealing a clear magnitude effect. This magnitude effect correlated with gray matter atrophy in parietal regions. Moreover, a numeral-dots transcoding task showed that CBS/PCA patients are able to take advantage of clustering in the spatial distribution of the dots of the array. The relative advantage associated with chunking compared to a random spatial distribution correlated with both parietal and prefrontal regions. These results shed light on the properties of systems for representing number knowledge in non-aphasic patients with CBS and PCA. PMID:25278132

Medical three-dimensional printing opens up new opportunities in cardiology and cardiac surgery.

PubMed

Bartel, Thomas; Rivard, Andrew; Jimenez, Alejandro; Mestres, Carlos A; Müller, Silvana

2018-04-14

Advanced percutaneous and surgical procedures in structural and congenital heart disease require precise pre-procedural planning and continuous quality control. Although current imaging modalities and post-processing software assists with peri-procedural guidance, their capabilities for spatial conceptualization remain limited in two- and three-dimensional representations. In contrast, 3D printing offers not only improved visualization for procedural planning, but provides substantial information on the accuracy of surgical reconstruction and device implantations. Peri-procedural 3D printing has the potential to set standards of quality assurance and individualized healthcare in cardiovascular medicine and surgery. Nowadays, a variety of clinical applications are available showing how accurate 3D computer reformatting and physical 3D printouts of native anatomy, embedded pathology, and implants are and how they may assist in the development of innovative therapies. Accurate imaging of pathology including target region for intervention, its anatomic features and spatial relation to the surrounding structures is critical for selecting optimal approach and evaluation of procedural results. This review describes clinical applications of 3D printing, outlines current limitations, and highlights future implications for quality control, advanced medical education and training.

Direction information in multiple object tracking is limited by a graded resource.

PubMed

Horowitz, Todd S; Cohen, Michael A

2010-10-01

Is multiple object tracking (MOT) limited by a fixed set of structures (slots), a limited but divisible resource, or both? Here, we answer this question by measuring the precision of the direction representation for tracked targets. The signature of a limited resource is a decrease in precision as the square root of the tracking load. The signature of fixed slots is a fixed precision. Hybrid models predict a rapid decrease to asymptotic precision. In two experiments, observers tracked moving disks and reported target motion direction by adjusting a probe arrow. We derived the precision of representation of correctly tracked targets using a mixture distribution analysis. Precision declined with target load according to the square-root law up to six targets. This finding is inconsistent with both pure and hybrid slot models. Instead, directional information in MOT appears to be limited by a continuously divisible resource.

Spatial Structure of Above-Ground Biomass Limits Accuracy of Carbon Mapping in Rainforest but Large Scale Forest Inventories Can Help to Overcome

PubMed Central

Guitet, Stéphane; Hérault, Bruno; Molto, Quentin; Brunaux, Olivier; Couteron, Pierre

2015-01-01

Precise mapping of above-ground biomass (AGB) is a major challenge for the success of REDD+ processes in tropical rainforest. The usual mapping methods are based on two hypotheses: a large and long-ranged spatial autocorrelation and a strong environment influence at the regional scale. However, there are no studies of the spatial structure of AGB at the landscapes scale to support these assumptions. We studied spatial variation in AGB at various scales using two large forest inventories conducted in French Guiana. The dataset comprised 2507 plots (0.4 to 0.5 ha) of undisturbed rainforest distributed over the whole region. After checking the uncertainties of estimates obtained from these data, we used half of the dataset to develop explicit predictive models including spatial and environmental effects and tested the accuracy of the resulting maps according to their resolution using the rest of the data. Forest inventories provided accurate AGB estimates at the plot scale, for a mean of 325 Mg.ha-1. They revealed high local variability combined with a weak autocorrelation up to distances of no more than10 km. Environmental variables accounted for a minor part of spatial variation. Accuracy of the best model including spatial effects was 90 Mg.ha-1 at plot scale but coarse graining up to 2-km resolution allowed mapping AGB with accuracy lower than 50 Mg.ha-1. Whatever the resolution, no agreement was found with available pan-tropical reference maps at all resolutions. We concluded that the combined weak autocorrelation and weak environmental effect limit AGB maps accuracy in rainforest, and that a trade-off has to be found between spatial resolution and effective accuracy until adequate “wall-to-wall” remote sensing signals provide reliable AGB predictions. Waiting for this, using large forest inventories with low sampling rate (<0.5%) may be an efficient way to increase the global coverage of AGB maps with acceptable accuracy at kilometric resolution. PMID:26402522

Middle atmosphere composition revealed by satellite observations

NASA Technical Reports Server (NTRS)

Russell, J. M., III; Solomon, S.; Mccormick, M. P.; Miller, A. J.; Barnett, J. J.; Jones, R. L.; Rusch, D. W.

1986-01-01

A series of plots that describe the state of the stratosphere and to some degree, the mesosphere as revealed by satellite observations are shown. The pertinent instrument features, spatial and temporal coverage, and details of accuracy and precision for the experiments providing the data were described. The main features of zonal mean cross sections and polar stereographic projections were noted and intercomparisons were discussed where a parameter was measured by more than one experiment. The main purpose was to collect the available data in one place and provide enough inforamation on limitations or cautions about the data so that they could be used in model comparisons and science studies.

Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40

NASA Astrophysics Data System (ADS)

Kuzmenko, Anton; Tankov, Stoyan; English, Brian P.; Tarassov, Ivan; Tenson, Tanel; Kamenski, Piotr; Elf, Johan; Hauryliuk, Vasili

2011-12-01

Tom40 is an integral protein of the mitochondrial outer membrane, which as the central component of the Translocase of the Outer Membrane (TOM) complex forms a channel for protein import. We characterize the diffusion properties of individual Tom40 molecules fused to the photoconvertable fluorescent protein Dendra2 with millisecond temporal resolution. By imaging individual Tom40 molecules in intact isolated yeast mitochondria using photoactivated localization microscopy with sub-diffraction limited spatial precision, we demonstrate that Tom40 movement in the outer mitochondrial membrane is highly dynamic but confined in nature, suggesting anchoring of the TOM complex as a whole.

Correction of mid-spatial-frequency errors by smoothing in spin motion for CCOS

NASA Astrophysics Data System (ADS)

Zhang, Yizhong; Wei, Chaoyang; Shao, Jianda; Xu, Xueke; Liu, Shijie; Hu, Chen; Zhang, Haichao; Gu, Haojin

2015-08-01

Smoothing is a convenient and efficient way to correct mid-spatial-frequency errors. Quantifying the smoothing effect allows improvements in efficiency for finishing precision optics. A series experiments in spin motion are performed to study the smoothing effects about correcting mid-spatial-frequency errors. Some of them use a same pitch tool at different spinning speed, and others at a same spinning speed with different tools. Introduced and improved Shu's model to describe and compare the smoothing efficiency with different spinning speed and different tools. From the experimental results, the mid-spatial-frequency errors on the initial surface were nearly smoothed out after the process in spin motion and the number of smoothing times can be estimated by the model before the process. Meanwhile this method was also applied to smooth the aspherical component, which has an obvious mid-spatial-frequency error after Magnetorheological Finishing processing. As a result, a high precision aspheric optical component was obtained with PV=0.1λ and RMS=0.01λ.

Juvenile Osprey Navigation during Trans-Oceanic Migration

PubMed Central

Horton, Travis W.; Bierregaard, Richard O.; Zawar-Reza, Peyman; Holdaway, Richard N.; Sagar, Paul

2014-01-01

To compensate for drift, an animal migrating through air or sea must be able to navigate. Although some species of bird, fish, insect, mammal, and reptile are capable of drift compensation, our understanding of the spatial reference frame, and associated coordinate space, in which these navigational behaviors occur remains limited. Using high resolution satellite-monitored GPS track data, we show that juvenile ospreys (Pandion haliaetus) are capable of non-stop constant course movements over open ocean spanning distances in excess of 1500 km despite the perturbing effects of winds and the lack of obvious landmarks. These results are best explained by extreme navigational precision in an exogenous spatio-temporal reference frame, such as positional orientation relative to Earth's magnetic field and pacing relative to an exogenous mechanism of keeping time. Given the age (<1 year-old) of these birds and knowledge of their hatching site locations, we were able to transform Enhanced Magnetic Model coordinate locations such that the origin of the magnetic coordinate space corresponded with each bird's nest. Our analyses show that trans-oceanic juvenile osprey movements are consistent with bicoordinate positional orientation in transformed magnetic coordinate or geographic space. Through integration of movement and meteorological data, we propose a new theoretical framework, chord and clock navigation, capable of explaining the precise spatial orientation and temporal pacing performed by juvenile ospreys during their long-distance migrations over open ocean. PMID:25493430

Development of a High Precision Axial 3-D PET for Brain Imaging

NASA Astrophysics Data System (ADS)

Bolle, E.; Braem, A.; Casella, C.; Chesi, E.; Clinthorne, N.; Cochran, E.; De Leo, R.; Dissertori, G.; Djambazov, L.; Honscheid, K.; Huh, S.; Johnson, I.; Joram, C.; Kagan, H.; Lacasta, C.; Lustermann, W.; Meddi, F.; Nappi, E.; Nessi-Tedaldi, F.; Oliver, J. F.; Pauss, F.; Rafecas, M.; Renker, D.; Rudge, A.; Schinzel, D.; Schneider, T.; Séguinot, J.; Smith, S.; Solevi, P.; Stapnes, S.; Vilardi, I.; Weilhammer, P.

2009-12-01

We describe a PET device based on a novel method to extract the coordinates of the interaction point of the 511keV γ rays from 100 mm long and thin LYSO (Lutetium Yttrium OxyorthoSilicate) scintillator bars, positioned axially in the tomograph. The coordinate along the hit crystal is measured by using a hodoscope of Wave Length Shifting (WLS) plastic strips mounted perpendicularly to each plane of scintillators. As photodetectors, new Geiger mode Avalanche PhotoDetectors (G-APDs) with integrated electronics are being used to detect both the hit crystal in a block (x and y coordinates) and the interaction point in the crystal (z coordinate) through the light escaping from the crystal and transmitted to the WLS strips. In this way, the γ interaction point can be determined with a spatial resolution of few cubic millimeters down to a minimum deposited energy of about 50 keV, resulting in a volumetric precision very close to the limits imposed by the physics of the positron annihilation. The method allows to increase the detection efficiency without affecting the spatial resolution by adding scintillator planes in the radial direction. A demonstrator scanner, based on two matrices of 8 × 6 LYS crystals and 312 WLS strips, slotted in between the crystals, is under construction. Preliminary results from the feasibility studies of the various components will be presented.

Factorial Comparison of Working Memory Models

PubMed Central

van den Berg, Ronald; Awh, Edward; Ma, Wei Ji

2014-01-01

Three questions have been prominent in the study of visual working memory limitations: (a) What is the nature of mnemonic precision (e.g., quantized or continuous)? (b) How many items are remembered? (c) To what extent do spatial binding errors account for working memory failures? Modeling studies have typically focused on comparing possible answers to a single one of these questions, even though the result of such a comparison might depend on the assumed answers to both others. Here, we consider every possible combination of previously proposed answers to the individual questions. Each model is then a point in a 3-factor model space containing a total of 32 models, of which only 6 have been tested previously. We compare all models on data from 10 delayed-estimation experiments from 6 laboratories (for a total of 164 subjects and 131,452 trials). Consistently across experiments, we find that (a) mnemonic precision is not quantized but continuous and not equal but variable across items and trials; (b) the number of remembered items is likely to be variable across trials, with a mean of 6.4 in the best model (median across subjects); (c) spatial binding errors occur but explain only a small fraction of responses (16.5% at set size 8 in the best model). We find strong evidence against all 6 documented models. Our results demonstrate the value of factorial model comparison in working memory. PMID:24490791

Using experimental design and spatial analyses to improve the precision of NDVI estimates in upland cotton field trials

USDA-ARS?s Scientific Manuscript database

Controlling for spatial variability is important in high-throughput phenotyping studies that enable large numbers of genotypes to be evaluated across time and space. In the current study, we compared the efficacy of different experimental designs and spatial models in the analysis of canopy spectral...

Dr. Kenneth Sudduth: A giant pioneering precision agriculture

USDA-ARS?s Scientific Manuscript database

Dr. Ken Sudduth is nationally and internationally recognized for his precision agriculture research and leadership, especially in the areas of soil sensing and assessment of spatial variability for site-specific management. His many noteworthy contributions include novel techniques and methodology f...

Integration of vegetation community spatial data into a prescribed fire planning process at Shenandoah National Park, Virginia (USA)

USGS Publications Warehouse

Young, John A.; Mahan, Carolyn G.; Forder, Melissa

2017-01-01

Many eastern forest communities depend on fire for regeneration or are enhanced by fire as a restoration practice. However, the use of prescribed fire in the mesic forested environments and the densely populated regions of the eastern United States has been limited. The objective of our research was to develop a science-based approach to prioritizing the use of prescribed fire in appropriate forest types in the eastern United States based on a set of desired management outcomes. Through a process of expert elicitation and data analysis, we assessed and integrated recent vegetation community mapping results along with other available spatial data layers into a spatial prioritization tool for prescribed fire planning at Shenandoah National Park (Virginia, USA). The integration of vegetation spatial data allowed for development of per-pixel priority rankings and exclusion areas enabling precise targeting of fire management activities on the ground, as well as a park-wide ranking of fire planning compartments. We demonstrate the use and evaluation of this approach through implementation and monitoring of a prescribed burn and show that progress is being made toward desired conditions. Integration of spatial data into the fire planning process has served as a collaborative tool for the implementation of prescribed fire projects, which assures projects will be planned in the most appropriate areas to meet objectives that are supported by current science.

Combining HJ CCD, GF-1 WFV and MODIS Data to Generate Daily High Spatial Resolution Synthetic Data for Environmental Process Monitoring.

PubMed

Wu, Mingquan; Huang, Wenjiang; Niu, Zheng; Wang, Changyao

2015-08-20

The limitations of satellite data acquisition mean that there is a lack of satellite data with high spatial and temporal resolutions for environmental process monitoring. In this study, we address this problem by applying the Enhanced Spatial and Temporal Adaptive Reflectance Fusion Model (ESTARFM) and the Spatial and Temporal Data Fusion Approach (STDFA) to combine Huanjing satellite charge coupled device (HJ CCD), Gaofen satellite no. 1 wide field of view camera (GF-1 WFV) and Moderate Resolution Imaging Spectroradiometer (MODIS) data to generate daily high spatial resolution synthetic data for land surface process monitoring. Actual HJ CCD and GF-1 WFV data were used to evaluate the precision of the synthetic images using the correlation analysis method. Our method was tested and validated for two study areas in Xinjiang Province, China. The results show that both the ESTARFM and STDFA can be applied to combine HJ CCD and MODIS reflectance data, and GF-1 WFV and MODIS reflectance data, to generate synthetic HJ CCD data and synthetic GF-1 WFV data that closely match actual data with correlation coefficients (r) greater than 0.8989 and 0.8643, respectively. Synthetic red- and near infrared (NIR)-band data generated by ESTARFM are more suitable for the calculation of Normalized Different Vegetation Index (NDVI) than the data generated by STDFA.

Combining HJ CCD, GF-1 WFV and MODIS Data to Generate Daily High Spatial Resolution Synthetic Data for Environmental Process Monitoring

PubMed Central

Wu, Mingquan; Huang, Wenjiang; Niu, Zheng; Wang, Changyao

2015-01-01

The limitations of satellite data acquisition mean that there is a lack of satellite data with high spatial and temporal resolutions for environmental process monitoring. In this study, we address this problem by applying the Enhanced Spatial and Temporal Adaptive Reflectance Fusion Model (ESTARFM) and the Spatial and Temporal Data Fusion Approach (STDFA) to combine Huanjing satellite charge coupled device (HJ CCD), Gaofen satellite no. 1 wide field of view camera (GF-1 WFV) and Moderate Resolution Imaging Spectroradiometer (MODIS) data to generate daily high spatial resolution synthetic data for land surface process monitoring. Actual HJ CCD and GF-1 WFV data were used to evaluate the precision of the synthetic images using the correlation analysis method. Our method was tested and validated for two study areas in Xinjiang Province, China. The results show that both the ESTARFM and STDFA can be applied to combine HJ CCD and MODIS reflectance data, and GF-1 WFV and MODIS reflectance data, to generate synthetic HJ CCD data and synthetic GF-1 WFV data that closely match actual data with correlation coefficients (r) greater than 0.8989 and 0.8643, respectively. Synthetic red- and near infrared (NIR)-band data generated by ESTARFM are more suitable for the calculation of Normalized Different Vegetation Index (NDVI) than the data generated by STDFA. PMID:26308017

A high-precision, distributed geodetic strainmeter based on dual coaxial cable Bragg gratings

NASA Astrophysics Data System (ADS)

Fu, J.; Wei, T.; Wei, M.; Shen, Y.

2014-12-01

Observations of surface deformation are essential for understanding a wide range of geophysical problems, including earthquakes, volcanoes, landslides, and glaciers. Current geodetic technologies, such as GPS, InSAR, borehole and laser strainmeters, are costly and limited in their temporal or spatial resolution. Here we present a new type of strainmeter based on coaxial cable Bragg grating (CCBG) sensing technology that provides high-precision, distributed strain measurements at a moderate cost. The coaxial-cable-based strainmeter is designed to cover a long distance (~ km) under harsh environmental conditions such as extreme temperatures. To minimize the environmental noises, two CCBGs are introduced into the geodetic strainmeter: one is used to measure the strain applied on it, and the other acts as a reference only to detect the environmental noises. The environmental noises are removed using the inputs from the strained CCBG and the reference CCBG in a frequency mixer. The test results show that the geodetic strainmeter with dual CCBGs has micron-strain accuracy in the lab.

3D Bioprinting for Tissue and Organ Fabrication

PubMed Central

Zhang, Yu Shrike; Yang, Jingzhou; Jia, Weitao; Dell’Erba, Valeria; Assawes, Pribpandao; Shin, Su Ryon; Dokmeci, Mehmet Remzi; Oklu, Rahmi; Khademhosseini, Ali

2016-01-01

The field of regenerative medicine has progressed tremendously over the past few decades in its ability to fabricate functional tissue substitutes. Conventional approaches based on scaffolding and microengineering are limited in their capacity of producing tissue constructs with precise biomimetic properties. Three-dimensional (3D) bioprinting technology, on the other hand, promises to bridge the divergence between artificially engineered tissue constructs and native tissues. In a sense, 3D bioprinting offers unprecedented versatility to co-deliver cells and biomaterials with precise control over their compositions, spatial distributions, and architectural accuracy, therefore achieving detailed or even personalized recapitulation of the fine shape, structure, and architecture of target tissues and organs. Here we briefly describe recent progresses of 3D bioprinting technology and associated bioinks suitable for the printing process. We then focus on the applications of this technology in fabrication of biomimetic constructs of several representative tissues and organs, including blood vessel, heart, liver, and cartilage. We finally conclude with future challenges in 3D bioprinting as well as potential solutions for further development. PMID:27126775

3D Bioprinting for Tissue and Organ Fabrication.

PubMed

Zhang, Yu Shrike; Yue, Kan; Aleman, Julio; Moghaddam, Kamyar Mollazadeh; Bakht, Syeda Mahwish; Yang, Jingzhou; Jia, Weitao; Dell'Erba, Valeria; Assawes, Pribpandao; Shin, Su Ryon; Dokmeci, Mehmet Remzi; Oklu, Rahmi; Khademhosseini, Ali

2017-01-01

The field of regenerative medicine has progressed tremendously over the past few decades in its ability to fabricate functional tissue substitutes. Conventional approaches based on scaffolding and microengineering are limited in their capacity of producing tissue constructs with precise biomimetic properties. Three-dimensional (3D) bioprinting technology, on the other hand, promises to bridge the divergence between artificially engineered tissue constructs and native tissues. In a sense, 3D bioprinting offers unprecedented versatility to co-deliver cells and biomaterials with precise control over their compositions, spatial distributions, and architectural accuracy, therefore achieving detailed or even personalized recapitulation of the fine shape, structure, and architecture of target tissues and organs. Here we briefly describe recent progresses of 3D bioprinting technology and associated bioinks suitable for the printing process. We then focus on the applications of this technology in fabrication of biomimetic constructs of several representative tissues and organs, including blood vessel, heart, liver, and cartilage. We finally conclude with future challenges in 3D bioprinting as well as potential solutions for further development.

Single photon detection and timing in the Lunar Laser Ranging Experiment.

NASA Technical Reports Server (NTRS)

Poultney, S. K.

1972-01-01

The goals of the Lunar Laser Ranging Experiment lead to the need for the measurement of a 2.5 sec time interval to an accuracy of a nanosecond or better. The systems analysis which included practical retroreflector arrays, available laser systems, and large telescopes led to the necessity of single photon detection. Operation under all background illumination conditions required auxiliary range gates and extremely narrow spectral and spatial filters in addition to the effective gate provided by the time resolution. Nanosecond timing precision at relatively high detection efficiency was obtained using the RCA C31000F photomultiplier and Ortec 270 constant fraction of pulse-height timing discriminator. The timing accuracy over the 2.5 sec interval was obtained using a digital interval with analog vernier ends. Both precision and accuracy are currently checked internally using a triggerable, nanosecond light pulser. Future measurements using sub-nanosecond laser pulses will be limited by the time resolution of single photon detectors.

Ionospheric scintillation effects on single frequency GPS

NASA Astrophysics Data System (ADS)

Steenburgh, R. A.; Smithtro, C. G.; Groves, K. M.

2008-04-01

Ionospheric scintillation of Global Positioning System (GPS) signals threatens navigation and military operations by degrading performance or making GPS unavailable. Scintillation is particularly active within, although not limited to, a belt encircling the Earth within 20 degrees of the geomagnetic equator. As GPS applications and users increase, so does the potential for degraded precision and availability from scintillation. We examined amplitude scintillation data spanning 7 years from Ascension Island, U.K.; Ancon, Peru; and Antofagasta, Chile in the Atlantic/American longitudinal sector as well as data from Parepare, Indonesia; Marak Parak, Malaysia; Pontianak, Indonesia; Guam; and Diego Garcia, U.K. in the Pacific longitudinal sector. From these data, we calculate percent probability of occurrence of scintillation at various intensities described by the S4 index. Additionally, we determine Dilution of Precision at 1 min resolution. We examine diurnal, seasonal, and solar cycle characteristics and make spatial comparisons. In general, activity was greatest during the equinoxes and solar maximum, although scintillation at Antofagasta, Chile was higher during 1998 rather than at solar maximum.

Evaluating species richness: biased ecological inference results from spatial heterogeneity in species detection probabilities

USGS Publications Warehouse

McNew, Lance B.; Handel, Colleen M.

2015-01-01

Accurate estimates of species richness are necessary to test predictions of ecological theory and evaluate biodiversity for conservation purposes. However, species richness is difficult to measure in the field because some species will almost always be overlooked due to their cryptic nature or the observer's failure to perceive their cues. Common measures of species richness that assume consistent observability across species are inviting because they may require only single counts of species at survey sites. Single-visit estimation methods ignore spatial and temporal variation in species detection probabilities related to survey or site conditions that may confound estimates of species richness. We used simulated and empirical data to evaluate the bias and precision of raw species counts, the limiting forms of jackknife and Chao estimators, and multi-species occupancy models when estimating species richness to evaluate whether the choice of estimator can affect inferences about the relationships between environmental conditions and community size under variable detection processes. Four simulated scenarios with realistic and variable detection processes were considered. Results of simulations indicated that (1) raw species counts were always biased low, (2) single-visit jackknife and Chao estimators were significantly biased regardless of detection process, (3) multispecies occupancy models were more precise and generally less biased than the jackknife and Chao estimators, and (4) spatial heterogeneity resulting from the effects of a site covariate on species detection probabilities had significant impacts on the inferred relationships between species richness and a spatially explicit environmental condition. For a real dataset of bird observations in northwestern Alaska, the four estimation methods produced different estimates of local species richness, which severely affected inferences about the effects of shrubs on local avian richness. Overall, our results indicate that neglecting the effects of site covariates on species detection probabilities may lead to significant bias in estimation of species richness, as well as the inferred relationships between community size and environmental covariates.

Precise Spatially Selective Photothermolysis Using Modulated Femtosecond Lasers and Real-time Multimodal Microscopy Monitoring.

PubMed

Huang, Yimei; Lui, Harvey; Zhao, Jianhua; Wu, Zhenguo; Zeng, Haishan

2017-01-01

The successful application of lasers in the treatment of skin diseases and cosmetic surgery is largely based on the principle of conventional selective photothermolysis which relies strongly on the difference in the absorption between the therapeutic target and its surroundings. However, when the differentiation in absorption is not sufficient, collateral damage would occur due to indiscriminate and nonspecific tissue heating. To deal with such cases, we introduce a novel spatially selective photothermolysis method based on multiphoton absorption in which the radiant energy of a tightly focused near-infrared femtosecond laser beam can be directed spatially by aiming the laser focal point to the target of interest. We construct a multimodal optical microscope to perform and monitor the spatially selective photothermolysis. We demonstrate that precise alteration of the targeted tissue is achieved while leaving surrounding tissue intact by choosing appropriate femtosecond laser exposure with multimodal optical microscopy monitoring in real time.

Precise Spatially Selective Photothermolysis Using Modulated Femtosecond Lasers and Real-time Multimodal Microscopy Monitoring

PubMed Central

Huang, Yimei; Lui, Harvey; Zhao, Jianhua; Wu, Zhenguo; Zeng, Haishan

2017-01-01

The successful application of lasers in the treatment of skin diseases and cosmetic surgery is largely based on the principle of conventional selective photothermolysis which relies strongly on the difference in the absorption between the therapeutic target and its surroundings. However, when the differentiation in absorption is not sufficient, collateral damage would occur due to indiscriminate and nonspecific tissue heating. To deal with such cases, we introduce a novel spatially selective photothermolysis method based on multiphoton absorption in which the radiant energy of a tightly focused near-infrared femtosecond laser beam can be directed spatially by aiming the laser focal point to the target of interest. We construct a multimodal optical microscope to perform and monitor the spatially selective photothermolysis. We demonstrate that precise alteration of the targeted tissue is achieved while leaving surrounding tissue intact by choosing appropriate femtosecond laser exposure with multimodal optical microscopy monitoring in real time. PMID:28255346

SPARQL Query Re-writing Using Partonomy Based Transformation Rules

NASA Astrophysics Data System (ADS)

Jain, Prateek; Yeh, Peter Z.; Verma, Kunal; Henson, Cory A.; Sheth, Amit P.

Often the information present in a spatial knowledge base is represented at a different level of granularity and abstraction than the query constraints. For querying ontology's containing spatial information, the precise relationships between spatial entities has to be specified in the basic graph pattern of SPARQL query which can result in long and complex queries. We present a novel approach to help users intuitively write SPARQL queries to query spatial data, rather than relying on knowledge of the ontology structure. Our framework re-writes queries, using transformation rules to exploit part-whole relations between geographical entities to address the mismatches between query constraints and knowledge base. Our experiments were performed on completely third party datasets and queries. Evaluations were performed on Geonames dataset using questions from National Geographic Bee serialized into SPARQL and British Administrative Geography Ontology using questions from a popular trivia website. These experiments demonstrate high precision in retrieval of results and ease in writing queries.

High spatial correspondence at a columnar level between activation and resting state fMRI signals and local field potentials.

PubMed

Shi, Zhaoyue; Wu, Ruiqi; Yang, Pai-Feng; Wang, Feng; Wu, Tung-Lin; Mishra, Arabinda; Chen, Li Min; Gore, John C

2017-05-16

Although blood oxygenation level-dependent (BOLD) fMRI has been widely used to map brain responses to external stimuli and to delineate functional circuits at rest, the extent to which BOLD signals correlate spatially with underlying neuronal activity, the spatial relationships between stimulus-evoked BOLD activations and local correlations of BOLD signals in a resting state, and whether these spatial relationships vary across functionally distinct cortical areas are not known. To address these critical questions, we directly compared the spatial extents of stimulated activations and the local profiles of intervoxel resting state correlations for both high-resolution BOLD at 9.4 T and local field potentials (LFPs), using 98-channel microelectrode arrays, in functionally distinct primary somatosensory areas 3b and 1 in nonhuman primates. Anatomic images of LFP and BOLD were coregistered within 0.10 mm accuracy. We found that the point spread functions (PSFs) of BOLD and LFP responses were comparable in the stimulus condition, and both estimates of activations were slightly more spatially constrained than local correlations at rest. The magnitudes of stimulus responses in area 3b were stronger than those in area 1 and extended in a medial to lateral direction. In addition, the reproducibility and stability of stimulus-evoked activation locations within and across both modalities were robust. Our work suggests that the intrinsic resolution of BOLD is not a limiting feature in practice and approaches the intrinsic precision achievable by multielectrode electrophysiology.

High spatial correspondence at a columnar level between activation and resting state fMRI signals and local field potentials

PubMed Central

Shi, Zhaoyue; Wu, Ruiqi; Yang, Pai-Feng; Wang, Feng; Wu, Tung-Lin; Mishra, Arabinda; Chen, Li Min; Gore, John C.

2017-01-01

Although blood oxygenation level-dependent (BOLD) fMRI has been widely used to map brain responses to external stimuli and to delineate functional circuits at rest, the extent to which BOLD signals correlate spatially with underlying neuronal activity, the spatial relationships between stimulus-evoked BOLD activations and local correlations of BOLD signals in a resting state, and whether these spatial relationships vary across functionally distinct cortical areas are not known. To address these critical questions, we directly compared the spatial extents of stimulated activations and the local profiles of intervoxel resting state correlations for both high-resolution BOLD at 9.4 T and local field potentials (LFPs), using 98-channel microelectrode arrays, in functionally distinct primary somatosensory areas 3b and 1 in nonhuman primates. Anatomic images of LFP and BOLD were coregistered within 0.10 mm accuracy. We found that the point spread functions (PSFs) of BOLD and LFP responses were comparable in the stimulus condition, and both estimates of activations were slightly more spatially constrained than local correlations at rest. The magnitudes of stimulus responses in area 3b were stronger than those in area 1 and extended in a medial to lateral direction. In addition, the reproducibility and stability of stimulus-evoked activation locations within and across both modalities were robust. Our work suggests that the intrinsic resolution of BOLD is not a limiting feature in practice and approaches the intrinsic precision achievable by multielectrode electrophysiology. PMID:28461461

Increasing the space-time product of super-resolution structured illumination microscopy by means of two-pattern illumination

NASA Astrophysics Data System (ADS)

Inochkin, F. M.; Pozzi, P.; Bezzubik, V. V.; Belashenkov, N. R.

2017-06-01

Superresolution image reconstruction method based on the structured illumination microscopy (SIM) principle with reduced and simplified pattern set is presented. The method described needs only 2 sinusoidal patterns shifted by half a period for each spatial direction of reconstruction, instead of the minimum of 3 for the previously known methods. The method is based on estimating redundant frequency components in the acquired set of modulated images. Digital processing is based on linear operations. When applied to several spatial orientations, the image set can be further reduced to a single pattern for each spatial orientation, complemented by a single non-modulated image for all the orientations. By utilizing this method for the case of two spatial orientations, the total input image set is reduced up to 3 images, providing up to 2-fold improvement in data acquisition time compared to the conventional 3-pattern SIM method. Using the simplified pattern design, the field of view can be doubled with the same number of spatial light modulator raster elements, resulting in a total 4-fold increase in the space-time product. The method requires precise knowledge of the optical transfer function (OTF). The key limitation is the thickness of object layer that scatters or emits light, which requires to be sufficiently small relatively to the lens depth of field. Numerical simulations and experimental results are presented. Experimental results are obtained on the SIM setup with the spatial light modulator based on the 1920x1080 digital micromirror device.

Comparison of Congruence Judgment and Auditory Localization Tasks for Assessing the Spatial Limits of Visual Capture

PubMed Central

Bosen, Adam K.; Fleming, Justin T.; Brown, Sarah E.; Allen, Paul D.; O'Neill, William E.; Paige, Gary D.

2016-01-01

Vision typically has better spatial accuracy and precision than audition, and as a result often captures auditory spatial perception when visual and auditory cues are presented together. One determinant of visual capture is the amount of spatial disparity between auditory and visual cues: when disparity is small visual capture is likely to occur, and when disparity is large visual capture is unlikely. Previous experiments have used two methods to probe how visual capture varies with spatial disparity. First, congruence judgment assesses perceived unity between cues by having subjects report whether or not auditory and visual targets came from the same location. Second, auditory localization assesses the graded influence of vision on auditory spatial perception by having subjects point to the remembered location of an auditory target presented with a visual target. Previous research has shown that when both tasks are performed concurrently they produce similar measures of visual capture, but this may not hold when tasks are performed independently. Here, subjects alternated between tasks independently across three sessions. A Bayesian inference model of visual capture was used to estimate perceptual parameters for each session, which were compared across tasks. Results demonstrated that the range of audio-visual disparities over which visual capture was likely to occur were narrower in auditory localization than in congruence judgment, which the model indicates was caused by subjects adjusting their prior expectation that targets originated from the same location in a task-dependent manner. PMID:27815630

Estimating chlorophyll with thermal and broadband multispectral high resolution imagery from an unmanned aerial system using relevance vector machines for precision agriculture

NASA Astrophysics Data System (ADS)

Elarab, Manal; Ticlavilca, Andres M.; Torres-Rua, Alfonso F.; Maslova, Inga; McKee, Mac

2015-12-01

Precision agriculture requires high-resolution information to enable greater precision in the management of inputs to production. Actionable information about crop and field status must be acquired at high spatial resolution and at a temporal frequency appropriate for timely responses. In this study, high spatial resolution imagery was obtained through the use of a small, unmanned aerial system called AggieAirTM. Simultaneously with the AggieAir flights, intensive ground sampling for plant chlorophyll was conducted at precisely determined locations. This study reports the application of a relevance vector machine coupled with cross validation and backward elimination to a dataset composed of reflectance from high-resolution multi-spectral imagery (VIS-NIR), thermal infrared imagery, and vegetative indices, in conjunction with in situ SPAD measurements from which chlorophyll concentrations were derived, to estimate chlorophyll concentration from remotely sensed data at 15-cm resolution. The results indicate that a relevance vector machine with a thin plate spline kernel type and kernel width of 5.4, having LAI, NDVI, thermal and red bands as the selected set of inputs, can be used to spatially estimate chlorophyll concentration with a root-mean-squared-error of 5.31 μg cm-2, efficiency of 0.76, and 9 relevance vectors.

CAMECA IMS 1300-HR3: The New Generation Ion Microprobe

NASA Astrophysics Data System (ADS)

Peres, P.; Choi, S. Y.; Renaud, L.; Saliot, P.; Larson, D. J.

2016-12-01

The success of secondary ion mass spectrometry (SIMS) in Geo- and Cosmo-chemistry relies on its performance in terms of: 1) very high sensitivity (mandatory for high precision measurements or to achieve low detection limits); 2) a broad mass range of elemental and isotopic species, from low mass (H) to high mass (U and above); 3) in-situ analysis of any solid flat polished surface; and 4) high spatial resolution from tens of microns down to sub-micron scale. The IMS 1300-HR3 (High Reproducibility, High spatial Resolution, High mass Resolution) is the latest generation of CAMECA's large geometry magnetic sector SIMS (or ion microprobe), successor to the internationally recognized IMS 1280-HR. The 1300-HR3delivers unmatched analytical performance for a wide range of applications (stable isotopes, geochronology, trace elements, nuclear safeguards and environmental studies…) due to: • High brightness RF-plasma oxygen ion source with enhanced beam density and current stability, dramatically improving spatial resolution, data reproducibility, and throughput • Automated sample loading system with motorized sample height (Z) adjustment, significantly increasing analysis precision, ease-of-use, and productivity • UV-light microscope for enhanced optical image resolution, together with dedicated software for easy sample navigation (developed by University of Wisconsin, USA) • Low noise 1012Ω resistor Faraday cup preamplifier boards for measuring low signal intensities In addition, improvements in electronics and software have been integrated into the new instrument. In order to meet a growing demand from geochronologists, CAMECA also introduces the KLEORA, which is a fully optimized ion microprobe for advanced mineral dating derived from the IMS 1300-HR3. Instrumental developments as well as data obtained for stable isotope and U-Pb dating applications will be presented in detail.

Mapping disease at an approximated individual level using aggregate data: a case study of mapping New Hampshire birth defects.

PubMed

Shi, Xun; Miller, Stephanie; Mwenda, Kevin; Onda, Akikazu; Reese, Judy; Onega, Tracy; Gui, Jiang; Karagas, Margret; Demidenko, Eugene; Moeschler, John

2013-09-06

Limited by data availability, most disease maps in the literature are for relatively large and subjectively-defined areal units, which are subject to problems associated with polygon maps. High resolution maps based on objective spatial units are needed to more precisely detect associations between disease and environmental factors. We propose to use a Restricted and Controlled Monte Carlo (RCMC) process to disaggregate polygon-level location data to achieve mapping aggregate data at an approximated individual level. RCMC assigns a random point location to a polygon-level location, in which the randomization is restricted by the polygon and controlled by the background (e.g., population at risk). RCMC allows analytical processes designed for individual data to be applied, and generates high-resolution raster maps. We applied RCMC to the town-level birth defect data for New Hampshire and generated raster maps at the resolution of 100 m. Besides the map of significance of birth defect risk represented by p-value, the output also includes a map of spatial uncertainty and a map of hot spots. RCMC is an effective method to disaggregate aggregate data. An RCMC-based disease mapping maximizes the use of available spatial information, and explicitly estimates the spatial uncertainty resulting from aggregation.

Integrating hydrologic and geophysical data to constrain coastal surficial aquifer processes at multiple spatial and temporal scales

USGS Publications Warehouse

Schultz, Gregory M.; Ruppel, Carolyn; Fulton, Patrick; Hyndman, David W.; Day-Lewis, Frederick D.; Singha, Kamini

2007-01-01

Since 1997, repeated, coincident geophysical surveys and extensive hydrologic studies in shallow monitoring wells have been used to study static and dynamic processes associated with surface water-groundwater interaction at a range of spatial scales at the estuarine and ocean boundaries of an undeveloped, permeable barrier island in the Georgia part of the U.S. South Atlantic Bight. Because geophysical and hydrologic data measure different parameters, at different resolution and precision, and over vastly different spatial scales, reconciling the coincident data or even combining complementary inversion, hydrogeochemcial analyses and well-based groundwater monitoring, and, in some cases, limited vegetation mapping to demonstrate the utility of an integrative, multidisciplinary approach for elucidating groundwater processes at spatial scales (tens to thousands of meters) that are often difficult to capture with traditional hydrologic approaches. The case studies highlight regional aquifer characteristics, varying degrees of lateral saltwater intrusion at estuarine boundaries, complex subsurface salinity gradients at the ocean boundary, and imaging of submarsh groundwater discharge and possible free convection in the pore waters of a clastic marsh. This study also documents the use of geophysical techniques for detecting temporal changes in groundwater salinity regimes under natural (not forced) gradients at intratidal to interannual (1998-200 Southeastern U.S.A. drought) time scales.

Protecting the privacy of individual general practice patient electronic records for geospatial epidemiology research.

PubMed

Mazumdar, Soumya; Konings, Paul; Hewett, Michael; Bagheri, Nasser; McRae, Ian; Del Fante, Peter

2014-12-01

General practitioner (GP) practices in Australia are increasingly storing patient information in electronic databases. These practice databases can be accessed by clinical audit software to generate reports that inform clinical or population health decision making and public health surveillance. Many audit software applications also have the capacity to generate de-identified patient unit record data. However, the de-identified nature of the extracted data means that these records often lack geographic information. Without spatial references, it is impossible to build maps reflecting the spatial distribution of patients with particular conditions and needs. Links to socioeconomic, demographic, environmental or other geographically based information are also not possible. In some cases, relatively coarse geographies such as postcode are available, but these are of limited use and researchers cannot undertake precision spatial analyses such as calculating travel times. We describe a method that allows researchers to implement meaningful mapping and spatial epidemiological analyses of practice level patient data while preserving privacy. This solution has been piloted in a diabetes risk research project in the patient population of a practice in Adelaide. The method offers researchers a powerful means of analysing geographic clinic data in a privacy-protected manner. © 2014 Public Health Association of Australia.

Single photon counting fluorescence lifetime detection of pericellular oxygen concentrations

NASA Astrophysics Data System (ADS)

Hosny, Neveen A.; Lee, David A.; Knight, Martin M.

2012-01-01

Fluorescence lifetime imaging microscopy offers a non-invasive method for quantifying local oxygen concentrations. However, existing methods are either invasive, require custom-made systems, or show limited spatial resolution. Therefore, these methods are unsuitable for investigation of pericellular oxygen concentrations. This study describes an adaptation of commercially available equipment which has been optimized for quantitative extracellular oxygen detection with high lifetime accuracy and spatial resolution while avoiding systematic photon pile-up. The oxygen sensitive fluorescent dye, tris(2,2'-bipyridyl)ruthenium(II) chloride hexahydrate [Ru(bipy)3]2+, was excited using a two-photon excitation laser. Lifetime was measured using a Becker & Hickl time-correlated single photon counting, which will be referred to as a TCSPC card. [Ru(bipy)3]2+ characterization studies quantified the influences of temperature, pH, cellular culture media and oxygen on the fluorescence lifetime measurements. This provided a precisely calibrated and accurate system for quantification of pericellular oxygen concentration based on measured lifetimes. Using this technique, quantification of oxygen concentrations around isolated viable chondrocytes, seeded in three-dimensional agarose gel, revealed a subpopulation of cells that exhibited significant spatial oxygen gradients such that oxygen concentration reduced with increasing proximity to the cell. This technique provides a powerful tool for quantifying spatial oxygen gradients within three-dimensional cellular models.

Single photon counting fluorescence lifetime detection of pericellular oxygen concentrations.

PubMed

Hosny, Neveen A; Lee, David A; Knight, Martin M

2012-01-01

Fluorescence lifetime imaging microscopy offers a non-invasive method for quantifying local oxygen concentrations. However, existing methods are either invasive, require custom-made systems, or show limited spatial resolution. Therefore, these methods are unsuitable for investigation of pericellular oxygen concentrations. This study describes an adaptation of commercially available equipment which has been optimized for quantitative extracellular oxygen detection with high lifetime accuracy and spatial resolution while avoiding systematic photon pile-up. The oxygen sensitive fluorescent dye, tris(2,2'-bipyridyl)ruthenium(II) chloride hexahydrate [Ru(bipy)(3)](2+), was excited using a two-photon excitation laser. Lifetime was measured using a Becker & Hickl time-correlated single photon counting, which will be referred to as a TCSPC card. [Ru(bipy)(3)](2+) characterization studies quantified the influences of temperature, pH, cellular culture media and oxygen on the fluorescence lifetime measurements. This provided a precisely calibrated and accurate system for quantification of pericellular oxygen concentration based on measured lifetimes. Using this technique, quantification of oxygen concentrations around isolated viable chondrocytes, seeded in three-dimensional agarose gel, revealed a subpopulation of cells that exhibited significant spatial oxygen gradients such that oxygen concentration reduced with increasing proximity to the cell. This technique provides a powerful tool for quantifying spatial oxygen gradients within three-dimensional cellular models.

Ice shelf snow accumulation rates from the Amundsen-Bellingshausen Sea sector of West Antarctica derived from airborne radar

NASA Astrophysics Data System (ADS)

Medley, B.; Kurtz, N. T.; Brunt, K. M.

2015-12-01

The large ice shelves surrounding the Antarctic continent buttress inland ice, limiting the grounded ice-sheet flow. Many, but not all, of the thick ice shelves located along the Amundsen-Bellingshausen Seas are experiencing rapid thinning due to enhanced basal melting driven by the intrusion of warm circumpolar deep water. Determination of their mass balance provides an indicator as to the future of the shelves buttressing capability; however, measurements of surface accumulation are few, limiting the precision of the mass balance estimates. Here, we present new radar-derived measurements of snow accumulation primarily over the Getz and Abbott Ice Shelves, as well as the Dotson and Crosson, which have been the focus of several of NASA's Operation IceBridge airborne surveys between 2009 and 2014. Specifically, we use the Center for Remote Sensing of Ice Sheets (CReSIS) snow radar to map the near-surface (< 30 m) internal stratigraphy to measure snow accumulation. Due to the complexities of the local topography (e.g., ice rises and rumples) and their relative proximity to the ocean, the spatial pattern of accumulation can be equally varied. Therefore, atmospheric models might not be able to reproduce these small-scale features because of their limited spatial resolution. To evaluate whether this is the case over these narrow shelves, we will compare the radar-derived accumulation rates with those from atmospheric models.

Hyperspectral imagery for mapping crop yield for precision agriculture

USDA-ARS?s Scientific Manuscript database

Crop yield is perhaps the most important piece of information for crop management in precision agriculture. It integrates the effects of various spatial variables such as soil properties, topographic attributes, tillage, plant population, fertilization, irrigation, and pest infestations. A yield map...

Sumatra-Andaman Megathrust Earthquake Slip: Insights From Mechanical Modeling of ICESat Surface Deformation Measurements

NASA Astrophysics Data System (ADS)

Harding, D. J.; Miuller, J. R.

2005-12-01

Modeling the kinematics of the 2004 Great Sumatra-Andaman earthquake is limited in the northern two-thirds of the rupture zone by a scarcity of near-rupture geodetic deformation measurements. Precisely repeated Ice, Cloud, and Land Elevation Satellite (ICESat) profiles across the Andaman and Nicobar Islands provide a means to more fully document the spatial pattern of surface vertical displacements and thus better constrain geomechanical modeling of the slip distribution. ICESat profiles that total ~45 km in length cross Car Nicobar, Kamorta, and Katchall in the Nicobar chain. Within the Andamans, the coverage includes ~350 km on North, Central, and South Andaman Islands along two NNE and NNW-trending profiles that provide elevations on both the east and west coasts of the island chain. Two profiles totaling ~80 km in length cross South Sentinel Island, and one profile ~10 km long crosses North Sentinel Island. With an average laser footprint spacing of 175 m, the total coverage provides over 2700 georeferenced surface elevations measurements for each operations period. Laser backscatter waveforms recorded for each footprint enable detection of forest canopy top and underlying ground elevations with decimeter vertical precision. Surface elevation change is determined from elevation profiles, acquired before and after the earthquake, that are repeated with a cross-track separation of less than 100 m by precision pointing of the ICESat spacecraft. Apparent elevation changes associated with cross-track offsets are corrected according to local slopes calculated from multiple post-earthquake repeated profiles. The surface deformation measurements recorded by ICESat are generally consistent with the spatial distribution of uplift predicted by a preliminary slip distribution model. To predict co-seismic surface deformation, we apply a slip distribution, derived from the released energy distribution computed by Ishii et al. (2005), as the displacement discontinuity boundary condition on the Sumatra-Andaman subduction interface fault. The direction of slip on the fault surface is derived from the slip directions computed by Tsai et al. (in review) for centroid moment tensor focal mechanisms spatially distributed along the rupture. The slip model will be refined to better correspond to the observed surface deformation as additional results from the ICESat profiles become available.

Micro-precise spatiotemporal delivery system embedded in 3D printing for complex tissue regeneration.

PubMed

Tarafder, Solaiman; Koch, Alia; Jun, Yena; Chou, Conrad; Awadallah, Mary R; Lee, Chang H

2016-04-25

Three dimensional (3D) printing has emerged as an efficient tool for tissue engineering and regenerative medicine, given its advantages for constructing custom-designed scaffolds with tunable microstructure/physical properties. Here we developed a micro-precise spatiotemporal delivery system embedded in 3D printed scaffolds. PLGA microspheres (μS) were encapsulated with growth factors (GFs) and then embedded inside PCL microfibers that constitute custom-designed 3D scaffolds. Given the substantial difference in the melting points between PLGA and PCL and their low heat conductivity, μS were able to maintain its original structure while protecting GF's bioactivities. Micro-precise spatial control of multiple GFs was achieved by interchanging dispensing cartridges during a single printing process. Spatially controlled delivery of GFs, with a prolonged release, guided formation of multi-tissue interfaces from bone marrow derived mesenchymal stem/progenitor cells (MSCs). To investigate efficacy of the micro-precise delivery system embedded in 3D printed scaffold, temporomandibular joint (TMJ) disc scaffolds were fabricated with micro-precise spatiotemporal delivery of CTGF and TGFβ3, mimicking native-like multiphase fibrocartilage. In vitro, TMJ disc scaffolds spatially embedded with CTGF/TGFβ3-μS resulted in formation of multiphase fibrocartilaginous tissues from MSCs. In vivo, TMJ disc perforation was performed in rabbits, followed by implantation of CTGF/TGFβ3-μS-embedded scaffolds. After 4 wks, CTGF/TGFβ3-μS embedded scaffolds significantly improved healing of the perforated TMJ disc as compared to the degenerated TMJ disc in the control group with scaffold embedded with empty μS. In addition, CTGF/TGFβ3-μS embedded scaffolds significantly prevented arthritic changes on TMJ condyles. In conclusion, our micro-precise spatiotemporal delivery system embedded in 3D printing may serve as an efficient tool to regenerate complex and inhomogeneous tissues.

Determining fine-scale migratory connectivity and habitat selection for a migratory songbird by using new GPS technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fraser, Kevin C.; Shave, A.; Savage, A.

Migratory aerial insectivores are among the fastest declining avian group, but our understanding of these trends has been limited by poor knowledge of migratory connectivity and the identification of critical habitat across the vast distances they travel annually. Using new, archival GPS loggers, we tracked individual purple martins ( Progne subis) from breeding colonies across North America to determine precise (<10m) locations of migratory and overwintering roost locations in South America and to test hypotheses for fine-scale migratory connectivity and habitat use. We discovered weak migratory connectivity at the roost scale, and extensive, fine-scale mixing of birds in the Amazonmore » from distant (>2000 km) breeding sites, with some individuals sharing the same roosting trees. Despite vast tracts of contiguous forest in this region, birds occupied a much more limited habitat, with most (56%) roosts occurring on small habitat islands that were strongly associated with water. Only 17% of these roosts were in current protected areas. As a result, these data reflect a critical advance in our ability to remotely determine precise migratory connectivity and habitat selection across vast spatial scales, enhancing our understanding of population dynamics and enabling more effective conservation of species at risk.« less

Attention mediates the flexible allocation of visual working memory resources.

PubMed

Emrich, Stephen M; Lockhart, Holly A; Al-Aidroos, Naseem

2017-07-01

Though it is clear that it is impossible to store an unlimited amount of information in visual working memory (VWM), the limiting mechanisms remain elusive. While several models of VWM limitations exist, these typically characterize changes in performance as a function of the number of to-be-remembered items. Here, we examine whether changes in spatial attention could better account for VWM performance, independent of load. Across 2 experiments, performance was better predicted by the prioritization of memory items (i.e., attention) than by the number of items to be remembered (i.e., memory load). This relationship followed a power law, and held regardless of whether performance was assessed based on overall precision or any of 3 measures in a mixture model. Moreover, at large set sizes, even minimally attended items could receive a small proportion of resources, without any evidence for a discrete-capacity on the number of items that could be maintained in VWM. Finally, the observed data were best fit by a variable-precision model in which response error was related to the proportion of resources allocated to each item, consistent with a model of VWM in which performance is determined by the continuous allocation of attentional resources during encoding. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Determining fine-scale migratory connectivity and habitat selection for a migratory songbird by using new GPS technology

DOE PAGES

Fraser, Kevin C.; Shave, A.; Savage, A.; ...

2016-07-27

Migratory aerial insectivores are among the fastest declining avian group, but our understanding of these trends has been limited by poor knowledge of migratory connectivity and the identification of critical habitat across the vast distances they travel annually. Using new, archival GPS loggers, we tracked individual purple martins ( Progne subis) from breeding colonies across North America to determine precise (<10m) locations of migratory and overwintering roost locations in South America and to test hypotheses for fine-scale migratory connectivity and habitat use. We discovered weak migratory connectivity at the roost scale, and extensive, fine-scale mixing of birds in the Amazonmore » from distant (>2000 km) breeding sites, with some individuals sharing the same roosting trees. Despite vast tracts of contiguous forest in this region, birds occupied a much more limited habitat, with most (56%) roosts occurring on small habitat islands that were strongly associated with water. Only 17% of these roosts were in current protected areas. As a result, these data reflect a critical advance in our ability to remotely determine precise migratory connectivity and habitat selection across vast spatial scales, enhancing our understanding of population dynamics and enabling more effective conservation of species at risk.« less

The MIGHTI Wind Retrieval Algorithm: Description and Verification

NASA Astrophysics Data System (ADS)

Harding, Brian J.; Makela, Jonathan J.; Englert, Christoph R.; Marr, Kenneth D.; Harlander, John M.; England, Scott L.; Immel, Thomas J.

2017-10-01

We present an algorithm to retrieve thermospheric wind profiles from measurements by the Michelson Interferometer for Global High-resolution Thermospheric Imaging (MIGHTI) instrument on NASA's Ionospheric Connection Explorer (ICON) mission. MIGHTI measures interferometric limb images of the green and red atomic oxygen emissions at 557.7 nm and 630.0 nm, spanning 90-300 km. The Doppler shift of these emissions represents a remote measurement of the wind at the tangent point of the line of sight. Here we describe the algorithm which uses these images to retrieve altitude profiles of the line-of-sight wind. By combining the measurements from two MIGHTI sensors with perpendicular lines of sight, both components of the vector horizontal wind are retrieved. A comprehensive truth model simulation that is based on TIME-GCM winds and various airglow models is used to determine the accuracy and precision of the MIGHTI data product. Accuracy is limited primarily by spherical asymmetry of the atmosphere over the spatial scale of the limb observation, a fundamental limitation of space-based wind measurements. For 80% of the retrieved wind samples, the accuracy is found to be better than 5.8 m/s (green) and 3.5 m/s (red). As expected, significant errors are found near the day/night boundary and occasionally near the equatorial ionization anomaly, due to significant variations of wind and emission rate along the line of sight. The precision calculation includes pointing uncertainty and shot, read, and dark noise. For average solar minimum conditions, the expected precision meets requirements, ranging from 1.2 to 4.7 m/s.

Application of geo-spatial technology in schistosomiasis modelling in Africa: a review.

PubMed

Manyangadze, Tawanda; Chimbari, Moses John; Gebreslasie, Michael; Mukaratirwa, Samson

2015-11-04

Schistosomiasis continues to impact socio-economic development negatively in sub-Saharan Africa. The advent of spatial technologies, including geographic information systems (GIS), Earth observation (EO) and global positioning systems (GPS) assist modelling efforts. However, there is increasing concern regarding the accuracy and precision of the current spatial models. This paper reviews the literature regarding the progress and challenges in the development and utilization of spatial technology with special reference to predictive models for schistosomiasis in Africa. Peer-reviewed papers identified through a PubMed search using the following keywords: geo-spatial analysis OR remote sensing OR modelling OR earth observation OR geographic information systems OR prediction OR mapping AND schistosomiasis AND Africa were used. Statistical uncertainty, low spatial and temporal resolution satellite data and poor validation were identified as some of the factors that compromise the precision and accuracy of the existing predictive models. The need for high spatial resolution of remote sensing data in conjunction with ancillary data viz. ground-measured climatic and environmental information, local presence/absence intermediate host snail surveys as well as prevalence and intensity of human infection for model calibration and validation are discussed. The importance of a multidisciplinary approach in developing robust, spatial data capturing, modelling techniques and products applicable in epidemiology is highlighted.

The role of spatial memory and frames of reference in the precision of angular path integration.

PubMed

Arthur, Joeanna C; Philbeck, John W; Kleene, Nicholas J; Chichka, David

2012-09-01

Angular path integration refers to the ability to maintain an estimate of self-location after a rotational displacement by integrating internally-generated (idiothetic) self-motion signals over time. Previous work has found that non-sensory inputs, namely spatial memory, can play a powerful role in angular path integration (Arthur et al., 2007, 2009). Here we investigated the conditions under which spatial memory facilitates angular path integration. We hypothesized that the benefit of spatial memory is particularly likely in spatial updating tasks in which one's self-location estimate is referenced to external space. To test this idea, we administered passive, non-visual body rotations (ranging 40°-140°) about the yaw axis and asked participants to use verbal reports or open-loop manual pointing to indicate the magnitude of the rotation. Prior to some trials, previews of the surrounding environment were given. We found that when participants adopted an egocentric frame of reference, the previously-observed benefit of previews on within-subject response precision was not manifested, regardless of whether remembered spatial frameworks were derived from vision or spatial language. We conclude that the powerful effect of spatial memory is dependent on one's frame of reference during self-motion updating. Copyright © 2012 Elsevier B.V. All rights reserved.

Kinetic Models for Topological Nearest-Neighbor Interactions

NASA Astrophysics Data System (ADS)

Blanchet, Adrien; Degond, Pierre

2017-12-01

We consider systems of agents interacting through topological interactions. These have been shown to play an important part in animal and human behavior. Precisely, the system consists of a finite number of particles characterized by their positions and velocities. At random times a randomly chosen particle, the follower, adopts the velocity of its closest neighbor, the leader. We study the limit of a system size going to infinity and, under the assumption of propagation of chaos, show that the limit kinetic equation is a non-standard spatial diffusion equation for the particle distribution function. We also study the case wherein the particles interact with their K closest neighbors and show that the corresponding kinetic equation is the same. Finally, we prove that these models can be seen as a singular limit of the smooth rank-based model previously studied in Blanchet and Degond (J Stat Phys 163:41-60, 2016). The proofs are based on a combinatorial interpretation of the rank as well as some concentration of measure arguments.

Calculations Supporting Management Zones

USDA-ARS?s Scientific Manuscript database

Since the early 1990’s the tools of precision farming (GPS, yield monitors, soil sensors, etc.) have documented how spatial and temporal variability are important factors impacting crop yield response. For precision farming, variability can be measured then used to divide up a field so that manageme...

On the use of particle filters for electromagnetic tracking in high dose rate brachytherapy.

PubMed

Götz, Th I; Lahmer, G; Brandt, T; Kallis, K; Strnad, V; Bert, Ch; Hensel, B; Tomé, A M; Lang, E W

2017-09-12

Modern radiotherapy of female breast cancers often employs high dose rate brachytherapy, where a radioactive source is moved inside catheters, implanted in the female breast, according to a prescribed treatment plan. Source localization relative to the patient's anatomy is determined with solenoid sensors whose spatial positions are measured with an electromagnetic tracking system. Precise sensor dwell position determination is of utmost importance to assure irradiation of the cancerous tissue according to the treatment plan. We present a hybrid data analysis system which combines multi-dimensional scaling with particle filters to precisely determine sensor dwell positions in the catheters during subsequent radiation treatment sessions. Both techniques are complemented with empirical mode decomposition for the removal of superimposed breathing artifacts. We show that the hybrid model robustly and reliably determines the spatial positions of all catheters used during the treatment and precisely determines any deviations of actual sensor dwell positions from the treatment plan. The hybrid system only relies on sensor positions measured with an EMT system and relates them to the spatial positions of the implanted catheters as initially determined with a computed x-ray tomography.

Comparison of bottom-track to global positioning system referenced discharges measured using an acoustic Doppler current profiler

USGS Publications Warehouse

Wagner, Chad R.; Mueller, David S.

2011-01-01

A negative bias in discharge measurements made with an acoustic Doppler current profiler (ADCP) can be caused by the movement of sediment on or near the streambed. The integration of a global positioning system (GPS) to track the movement of the ADCP can be used to avoid the systematic negative bias associated with a moving streambed. More than 500 discharge transects from 63 discharge measurements with GPS data were collected at sites throughout the US, Canada, and New Zealand with no moving bed to compare GPS and bottom-track-referenced discharges. Although the data indicated some statistical bias depending on site conditions and type of GPS data used, these biases were typically about 0.5% or less. An assessment of differential correction sources was limited by a lack of data collected in a range of different correction sources and different GPS receivers at the same sites. Despite this limitation, the data indicate that the use of Wide Area Augmentation System (WAAS) corrected positional data is acceptable for discharge measurements using GGA as the boat-velocity reference. The discharge data based on GPS-referenced boat velocities from the VTG data string, which does not require differential correction, were comparable to the discharges based on GPS-referenced boat velocities from the differentially-corrected GGA data string. Spatial variability of measure discharges referenced to GGA, VTG and bottom-tracking is higher near the channel banks. The spatial variability of VTG-referenced discharges is correlated with the spatial distribution of maximum Horizontal Dilution of Precision (HDOP) values and the spatial variability of GGA-referenced discharges is correlated with proximity to channel banks.

Evaluating the potential of the MegaSIMS for nuclear forensics

NASA Astrophysics Data System (ADS)

Boehnke, P.; McKeegan, K. D.; Coath, C. D.; Hutcheon, I. D.; Steele, R. C.; Harrison, M.

2013-12-01

Nuclear forensics investigates the illicit movement of nuclear materials. Measurements of uranium isotopic compositions are an important key as they permit provenance tracing and determination of intended use. Traditional secondary ion mass spectrometers (SIMS) are incapable of resolving 235UH from 236U due to the high mass resolving power (MRP ~38,000) needed, significantly limiting their ability to accurately measure 236U/235U, particularly for highly enriched uranium. This limitation can significantly inhibit the ability to establish details about enrichment processes. The MegaSIMS is a unique combination of SIMS and accelerator mass spectrometry (AMS) and allows for molecular interference free measurements, while retaining the spatial resolution and ease of sample preparation common in SIMS analyses. The instrument was primarily designed to measure the oxygen isotope composition of the solar wind [1] and its capability for measuring high mass elements has not been evaluated previously. We evaluated the potential of the MegaSIMS by measuring 236U/235U without hydride interference. While preliminary results show abundance sensitivity of ~E-9 and an MRP of ~1,200 at the high mass side of 238 amu, precision is limited by the detector geometry and slow magnet switching. Future work will include developing electrostatic peak switching as well as refining the measurement precision and abundance sensitivity of the MegaSIMS for nuclear forensics. [1] McKeegan, Kallio, Heber, Jarzebinski, Mao, Coath, Kunihiro, Wiens, Nordholt, Moses Jr., Reisenfeld, Jurewicz, and Burnett, 2011. Science. 332, 1528-1532.

Spatial Variability of Grapevine Bud Burst Percentage and Its Association with Soil Properties at Field Scale

PubMed Central

Li, Tao; Hao, Xinmei; Kang, Shaozhong

2016-01-01

There is a growing interest in precision viticulture with the development of global positioning system and geographical information system technologies. Limited information is available on spatial variation of bud behavior and its possible association with soil properties. The objective of this study was to investigate spatial variability of bud burst percentage and its association with soil properties based on 2-year experiments at a vineyard of arid northwest China. Geostatistical approach was used to describe the spatial variation in bud burst percentage within the vineyard. Partial least square regressions (PLSRs) of bud burst percentage with soil properties were used to evaluate the contribution of soil properties to overall spatial variability in bud burst percentage for the high, medium and low bud burst percentage groups. Within the vineyard, the coefficient of variation (CV) of bud burst percentage was 20% and 15% for 2012 and 2013 respectively. Bud burst percentage within the vineyard showed moderate spatial variability, and the overall spatial pattern of bud burst percentage was similar between the two years. Soil properties alone explained 31% and 37% of the total spatial variation respectively for the low group of 2012 and 2013, and 16% and 24% for the high group of 2012 and 2013 respectively. For the low group, the fraction of variations explained by soil properties was found similar between the two years, while there was substantial difference for the high group. The findings are expected to lay a good foundation for developing remedy measures in the areas with low bud burst percentage, thus in turn improving the overall grape yield and quality. PMID:27798692

The fusion of satellite and UAV data: simulation of high spatial resolution band

NASA Astrophysics Data System (ADS)

Jenerowicz, Agnieszka; Siok, Katarzyna; Woroszkiewicz, Malgorzata; Orych, Agata

2017-10-01

Remote sensing techniques used in the precision agriculture and farming that apply imagery data obtained with sensors mounted on UAV platforms became more popular in the last few years due to the availability of low- cost UAV platforms and low- cost sensors. Data obtained from low altitudes with low- cost sensors can be characterised by high spatial and radiometric resolution but quite low spectral resolution, therefore the application of imagery data obtained with such technology is quite limited and can be used only for the basic land cover classification. To enrich the spectral resolution of imagery data acquired with low- cost sensors from low altitudes, the authors proposed the fusion of RGB data obtained with UAV platform with multispectral satellite imagery. The fusion is based on the pansharpening process, that aims to integrate the spatial details of the high-resolution panchromatic image with the spectral information of lower resolution multispectral or hyperspectral imagery to obtain multispectral or hyperspectral images with high spatial resolution. The key of pansharpening is to properly estimate the missing spatial details of multispectral images while preserving their spectral properties. In the research, the authors presented the fusion of RGB images (with high spatial resolution) obtained with sensors mounted on low- cost UAV platforms and multispectral satellite imagery with satellite sensors, i.e. Landsat 8 OLI. To perform the fusion of UAV data with satellite imagery, the simulation of the panchromatic bands from RGB data based on the spectral channels linear combination, was conducted. Next, for simulated bands and multispectral satellite images, the Gram-Schmidt pansharpening method was applied. As a result of the fusion, the authors obtained several multispectral images with very high spatial resolution and then analysed the spatial and spectral accuracies of processed images.

Temporal Data-Driven Sleep Scheduling and Spatial Data-Driven Anomaly Detection for Clustered Wireless Sensor Networks

PubMed Central

Li, Gang; He, Bin; Huang, Hongwei; Tang, Limin

2016-01-01

The spatial–temporal correlation is an important feature of sensor data in wireless sensor networks (WSNs). Most of the existing works based on the spatial–temporal correlation can be divided into two parts: redundancy reduction and anomaly detection. These two parts are pursued separately in existing works. In this work, the combination of temporal data-driven sleep scheduling (TDSS) and spatial data-driven anomaly detection is proposed, where TDSS can reduce data redundancy. The TDSS model is inspired by transmission control protocol (TCP) congestion control. Based on long and linear cluster structure in the tunnel monitoring system, cooperative TDSS and spatial data-driven anomaly detection are then proposed. To realize synchronous acquisition in the same ring for analyzing the situation of every ring, TDSS is implemented in a cooperative way in the cluster. To keep the precision of sensor data, spatial data-driven anomaly detection based on the spatial correlation and Kriging method is realized to generate an anomaly indicator. The experiment results show that cooperative TDSS can realize non-uniform sensing effectively to reduce the energy consumption. In addition, spatial data-driven anomaly detection is quite significant for maintaining and improving the precision of sensor data. PMID:27690035

Larger aftershocks happen farther away: nonseparability of magnitude and spatial distributions of aftershocks

USGS Publications Warehouse

Van Der Elst, Nicholas; Shaw, Bruce E.

2015-01-01

Aftershocks may be driven by stress concentrations left by the main shock rupture or by elastic stress transfer to adjacent fault sections or strands. Aftershocks that occur within the initial rupture may be limited in size, because the scale of the stress concentrations should be smaller than the primary rupture itself. On the other hand, aftershocks that occur on adjacent fault segments outside the primary rupture may have no such size limitation. Here we use high-precision double-difference relocated earthquake catalogs to demonstrate that larger aftershocks occur farther away than smaller aftershocks, when measured from the centroid of early aftershock activity—a proxy for the initial rupture. Aftershocks as large as or larger than the initiating event nucleate almost exclusively in the outer regions of the aftershock zone. This observation is interpreted as a signature of elastic rebound in the earthquake catalog and can be used to improve forecasting of large aftershocks.

Nanoscale probing of electron-regulated structural transitions in silk proteins by near-field IR imaging and nano-spectroscopy

PubMed Central

Qin, Nan; Zhang, Shaoqing; Jiang, Jianjuan; Corder, Stephanie Gilbert; Qian, Zhigang; Zhou, Zhitao; Lee, Woonsoo; Liu, Keyin; Wang, Xiaohan; Li, Xinxin; Shi, Zhifeng; Mao, Ying; Bechtel, Hans A.; Martin, Michael C.; Xia, Xiaoxia; Marelli, Benedetto; Kaplan, David L.; Omenetto, Fiorenzo G.; Liu, Mengkun; Tao, Tiger H.

2016-01-01

Silk protein fibres produced by silkworms and spiders are renowned for their unparalleled mechanical strength and extensibility arising from their high-β-sheet crystal contents as natural materials. Investigation of β-sheet-oriented conformational transitions in silk proteins at the nanoscale remains a challenge using conventional imaging techniques given their limitations in chemical sensitivity or limited spatial resolution. Here, we report on electron-regulated nanoscale polymorphic transitions in silk proteins revealed by near-field infrared imaging and nano-spectroscopy at resolutions approaching the molecular level. The ability to locally probe nanoscale protein structural transitions combined with nanometre-precision electron-beam lithography offers us the capability to finely control the structure of silk proteins in two and three dimensions. Our work paves the way for unlocking essential nanoscopic protein structures and critical conditions for electron-induced conformational transitions, offering new rules to design protein-based nanoarchitectures. PMID:27713412

Black Holes Masses in Seyfert Galaxies

NASA Technical Reports Server (NTRS)

Macchetto, F. D.

2004-01-01

There is increasing evidence for the existence of supermassive black holes at the centers of all galaxies, and much work is being devoted to understand the process that lead to their formation, the duty cycle for the active phase of these black holes and the relevant fueling mechanisms. Seyfert galaxies determined by HST high spatial resolution observations of the kinematics of the central regions. The study of the gas kinematics provides a unique tool to probe the gravitational potential of the nuclear regions of Seyfert galaxies down to a limit radius of a few parsecs. This is particularly important to detect and measure the mass associated with any central massive black hole. We have obtained high spatial resolution spectra of a number of Seyfert galaxies, with the STIS G430M and G750M gratings, and we have been able to separate the emission line components associated with different velocity systems. We have derived two-dimensional velocity fields and determined the mass of the central black hole with good precision for each of the galaxies.

Laboratory demonstration of a Brillouin lidar to remotely measure temperature profiles of the ocean

NASA Astrophysics Data System (ADS)

Rudolf, Andreas; Walther, Thomas

2014-05-01

We report on the successful laboratory demonstration of a real-time lidar system to remotely measure temperature profiles in water. In the near future, it is intended to be operated from a mobile platform, e.g., a helicopter or vessel, in order to precisely determine the temperature of the surface mixed layer of the ocean with high spatial resolution. The working principle relies on the active generation and detection of spontaneous Brillouin scattering. The light source consists of a frequency-doubled fiber-amplified external cavity diode laser and provides high-energy, Fourier transform-limited laser pulses in the green spectral range. The detector is based on an atomic edge filter and allows the challenging extraction of the temperature information from the Brillouin scattered light. In the lab environment, depending on the amount of averaging, water temperatures were resolved with a mean accuracy of up to 0.07°C and a spatial resolution of 1 m, proving the feasibility and the large potential of the overall system.

Preliminary Assessment of Spatial Competition in the Market for E85

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clinton, Bentley

Anecdotal evidence suggests retail E85 prices may track retail gasoline prices rather than wholesale costs. This indicates E85 prices may be higher than they would be if priced on a cost basis hence limiting adoption by some price-sensitive consumers. Using publicly available and proprietary E83 and regular gasoline price data, we examine pricing behavior in the market for E85. Specifically, we assess the extent to which local retail competition in E85 markets decreases E85 retail prices. Results of econometric analysis suggest that higher levels of retail competition (measured in terms of station density) are associated with lower E85 prices atmore » the pump. While more precise causal estimates may be produced from more comprehensive data, this study is the first to our knowledge that estimates the spatial competition dimension of E85 pricing behavior by firms. This is an initial presentation; a related technical report is also available.« less

Preliminary Assessment of Spatial Competition in the Market for E85: Presentation Supplement

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clinton, Bentley; Johnson, Caley; Moriarty, Kristi

Anecdotal evidence suggests retail E85 prices may track retail gasoline prices rather than wholesale costs. This indicates E85 prices may be higher than they would be if priced on a cost basis hence limiting adoption by some price-sensitive consumers. Using publicly available and proprietary E85 and regular gasoline price data, we examine pricing behavior in the market for E85. Specifically, we assess the extent to which local retail competition in E85 markets decreases E85 retail prices. Results of econometric analysis suggest that higher levels of retail competition (measured in terms of station density) are associated with lower E85 prices atmore » the pump. While more precise causal estimates may be produced from more comprehensive data, this study is the first to our knowledge that estimates the spatial competition dimension of E85 pricing behavior by firms. This technical report elaborates on a related presentation.« less

GLASS: spatially resolved spectroscopy of lensed galaxies in the Frontier Fields

NASA Astrophysics Data System (ADS)

Jones, Tucker; Treu, Tommaso; Brammer, Gabriel; Borello Schmidt, Kasper; Malkan, Matthew A.

2015-08-01

The Grism Lens-Amplified Survey from Space (GLASS) has obtained slitless near-IR spectroscopy of 10 galaxy clusters selected for their strong lensing properties, including all six Hubble Frontier Fields. Slitless grism spectra are ideal for mapping emission lines such as [O II], [O III], and H alpha at z=1-3. The combination of strong gravitational lensing and HST's diffraction limit provides excellent sensitivity with spatial resolution as fine as 100 pc for highly magnified sources, and ~500 pc for less magnified sources near the edge of the field of view. The GLASS survey represents the largest spectroscopic sample with such high resolution at z>1. GLASS and Hubble Frontier Field data provide the distribution of stellar mass, star formation, gas-phase metallicity, and other aspects of the physical structure of high redshift galaxies, reaching unprecedented stellar masses as low as ~10^7 Msun at z=2. I will discuss precise measurements of these physical properties and implications for galaxy evolution.

Spatially resolved spectroscopy of lensed galaxies in the Frontier Fields

NASA Astrophysics Data System (ADS)

Jones, Tucker; Aff004

The Grism Lens-Amplified Survey from Space (GLASS) has obtained slitless near-infrared spectroscopy of 10 galaxy clusters selected for their strong lensing properties, including all six Hubble Frontier Fields. Slitless grism spectra are ideal for mapping emission lines such as [O ii], [O iii], and Hα at z=1-3. The combination of strong gravitational lensing and Hubble's diffraction limit provides excellent sensitivity with spatial resolution as fine as 100 pc for highly magnified sources, and ~500 pc for less magnified sources near the edge of the field of view. The GLASS survey represents the largest spectroscopic sample with such high resolution at z > 1. GLASS and Hubble Frontier Field data provide the distribution of stellar mass, star formation, gas-phase metallicity, and other aspects of the physical structure of high redshift galaxies, reaching stellar masses as low as ~107 M⊙ at z=2. I discuss precise measurements of these physical properties and implications for galaxy evolution.

Spatial interpolation quality assessments for soil sensor transect datasets

USDA-ARS?s Scientific Manuscript database

Near-ground geophysical soil sensors provide extremely valuable information for precision agriculture applications. Indeed, their readings can be used as proxy for many soil parameters. Typically, leave-one-out (loo) cross-validation (CV) of spatial interpolation of sensor data returns overly optimi...

The Premotor theory of attention: time to move on?

PubMed

Smith, Daniel T; Schenk, Thomas

2012-05-01

Spatial attention and eye-movements are tightly coupled, but the precise nature of this coupling is controversial. The influential but controversial Premotor theory of attention makes four specific predictions about the relationship between motor preparation and spatial attention. Firstly, spatial attention and motor preparation use the same neural substrates. Secondly, spatial attention is functionally equivalent to planning goal directed actions such as eye-movements (i.e. planning an action is both necessary and sufficient for a shift of spatial attention). Thirdly, planning a goal directed action with any effector system is sufficient to trigger a shift of spatial attention. Fourthly, the eye-movement system has a privileged role in orienting visual spatial attention. This article reviews empirical studies that have tested these predictions. Contrary to predictions one and two there is evidence of anatomical and functional dissociations between endogenous spatial attention and motor preparation. However, there is compelling evidence that exogenous attention is reliant on activation of the oculomotor system. With respect to the third prediction, there is correlational evidence that spatial attention is directed to the endpoint of goal-directed actions but no direct evidence that this attention shift is dependent on motor preparation. The few studies to have directly tested the fourth prediction have produced conflicting results, so the extent to which the oculomotor system has a privileged role in spatial attention remains unclear. Overall, the evidence is not consistent with the view that spatial attention is functionally equivalent to motor preparation so the Premotor theory should be rejected, although a limited version of the Premotor theory in which only exogenous attention is dependent on motor preparation may still be tenable. A plausible alternative account is that activity in the motor system contributes to biased competition between different sensory representations with the winner of the competition becoming the attended item. Copyright © 2012 Elsevier Ltd. All rights reserved.

Campanile Near-Field Probes Fabricated by Nanoimprint Lithography on the Facet of an Optical Fiber

DOE PAGES

Calafiore, Giuseppe; Koshelev, Alexander; Darlington, Thomas P.; ...

2017-05-10

One of the major challenges to the widespread adoption of plasmonic and nano-optical devices in real-life applications is the difficulty to mass-fabricate nano-optical antennas in parallel and reproducible fashion, and the capability to precisely place nanoantennas into devices with nanometer-scale precision. In this study, we present a solution to this challenge using the state-of-the-art ultraviolet nanoimprint lithography (UV-NIL) to fabricate functional optical transformers onto the core of an optical fiber in a single step, mimicking the 'campanile' near-field probes. Imprinted probes were fabricated using a custom-built imprinter tool with co-axial alignment capability with sub < 100 nm position accuracy, followedmore » by a metallization step. Scanning electron micrographs confirm high imprint fidelity and precision with a thin residual layer to facilitate efficient optical coupling between the fiber and the imprinted optical transformer. The imprinted optical transformer probe was used in an actual NSOM measurement performing hyperspectral photoluminescence mapping of standard fluorescent beads. The calibration scans confirmed that imprinted probes enable sub-diffraction limited imaging with a spatial resolution consistent with the gap size. This novel nano-fabrication approach promises a low-cost, high-throughput, and reproducible manufacturing of advanced nano-optical devices.« less

Campanile Near-Field Probes Fabricated by Nanoimprint Lithography on the Facet of an Optical Fiber

DOE Office of Scientific and Technical Information (OSTI.GOV)

Calafiore, Giuseppe; Koshelev, Alexander; Darlington, Thomas P.

One of the major challenges to the widespread adoption of plasmonic and nano-optical devices in real-life applications is the difficulty to mass-fabricate nano-optical antennas in parallel and reproducible fashion, and the capability to precisely place nanoantennas into devices with nanometer-scale precision. In this study, we present a solution to this challenge using the state-of-the-art ultraviolet nanoimprint lithography (UV-NIL) to fabricate functional optical transformers onto the core of an optical fiber in a single step, mimicking the 'campanile' near-field probes. Imprinted probes were fabricated using a custom-built imprinter tool with co-axial alignment capability with sub < 100 nm position accuracy, followedmore » by a metallization step. Scanning electron micrographs confirm high imprint fidelity and precision with a thin residual layer to facilitate efficient optical coupling between the fiber and the imprinted optical transformer. The imprinted optical transformer probe was used in an actual NSOM measurement performing hyperspectral photoluminescence mapping of standard fluorescent beads. The calibration scans confirmed that imprinted probes enable sub-diffraction limited imaging with a spatial resolution consistent with the gap size. This novel nano-fabrication approach promises a low-cost, high-throughput, and reproducible manufacturing of advanced nano-optical devices.« less

Precision agriculture: Data to knowledge decision

USDA-ARS?s Scientific Manuscript database

From the development of the first viable variable-rate fertilizer systems in the upper Midwest USA, precision agriculture is now about two decades old. In that time, new technologies have come into play, but the overall goal of using spatial data to create actionable knowledge that can then be used ...

Active remote sensing.

Treesearch

Hans-Erik Andersen; Stephen E. Reutebuch; Robert J. McGaughey

2006-01-01

The development of remote sensing technologies increases the potential to support more precise, efficient, and ecologically-sensitive approaches to forest resource management. One of the primary requirements of precision forest management is accurate and detailed 3D spatial data relating to the type and condition of forest stands and characteristics of the underlying...

13 Years of TOPEX/POSEIDON Precision Orbit Determination and the 10-fold Improvement in Expected Orbit Accuracy

NASA Technical Reports Server (NTRS)

Lemoine, F. G.; Zelensky, N. P.; Luthcke, S. B.; Rowlands, D. D.; Beckley, B. D.; Klosko, S. M.

2006-01-01

Launched in the summer of 1992, TOPEX/POSEIDON (T/P) was a joint mission between NASA and the Centre National d Etudes Spatiales (CNES), the French Space Agency, to make precise radar altimeter measurements of the ocean surface. After the remarkably successful 13-years of mapping the ocean surface T/P lost its ability to maneuver and was de-commissioned January 2006. T/P revolutionized the study of the Earth s oceans by vastly exceeding pre-launch estimates of surface height accuracy recoverable from radar altimeter measurements. The precision orbit lies at the heart of the altimeter measurement providing the reference frame from which the radar altimeter measurements are made. The expected quality of orbit knowledge had limited the measurement accuracy expectations of past altimeter missions, and still remains a major component in the error budget of all altimeter missions. This paper describes critical improvements made to the T/P orbit time series over the 13-years of precise orbit determination (POD) provided by the GSFC Space Geodesy Laboratory. The POD improvements from the pre-launch T/P expectation of radial orbit accuracy and Mission requirement of 13-cm to an expected accuracy of about 1.5-cm with today s latest orbits will be discussed. The latest orbits with 1.5 cm RMS radial accuracy represent a significant improvement to the 2.0-cm accuracy orbits currently available on the T/P Geophysical Data Record (GDR) altimeter product.

Evaluating GPS biologging technology for studying spatial ecology of large constricting snakes

USGS Publications Warehouse

Smith, Brian; Hart, Kristen M.; Mazzotti, Frank J.; Basille, Mathieu; Romagosa, Christina M.

2018-01-01

Background: GPS telemetry has revolutionized the study of animal spatial ecology in the last two decades. Until recently, it has mainly been deployed on large mammals and birds, but the technology is rapidly becoming miniaturized, and applications in diverse taxa are becoming possible. Large constricting snakes are top predators in their ecosystems, and accordingly they are often a management priority, whether their populations are threatened or invasive. Fine-scale GPS tracking datasets could greatly improve our ability to understand and manage these snakes, but the ability of this new technology to deliver high-quality data in this system is unproven. In order to evaluate GPS technology in large constrictors, we GPS-tagged 13 Burmese pythons (Python bivittatus) in Everglades National Park and deployed an additional 7 GPS tags on stationary platforms to evaluate habitat-driven biases in GPS locations. Both python and test platform GPS tags were programmed to attempt a GPS fix every 90 min.Results: While overall fix rates for the tagged pythons were low (18.1%), we were still able to obtain an average of 14.5 locations/animal/week, a large improvement over once-weekly VHF tracking. We found overall accuracy and precision to be very good (mean accuracy = 7.3 m, mean precision = 12.9 m), but a very few imprecise locations were still recorded (0.2% of locations with precision > 1.0 km). We found that dense vegetation did decrease fix rate, but we concluded that the low observed fix rate was also due to python microhabitat selection underground or underwater. Half of our recovered pythons were either missing their tag or the tag had malfunctioned, resulting in no data being recovered.Conclusions: GPS biologging technology is a promising tool for obtaining frequent, accurate, and precise locations of large constricting snakes. We recommend future studies couple GPS telemetry with frequent VHF locations in order to reduce bias and limit the impact of catastrophic failures on data collection, and we recommend improvements to GPS tag design to lessen the frequency of these failures.

AMES Stereo Pipeline Derived DEM Accuracy Experiment Using LROC-NAC Stereopairs and Weighted Spatial Dependence Simulation for Lunar Site Selection

NASA Astrophysics Data System (ADS)

Laura, J. R.; Miller, D.; Paul, M. V.

2012-03-01

An accuracy assessment of AMES Stereo Pipeline derived DEMs for lunar site selection using weighted spatial dependence simulation and a call for outside AMES derived DEMs to facilitate a statistical precision analysis.

Considerations for applying digital soil mapping to ecological sites

USDA-ARS?s Scientific Manuscript database

Recent advancements in the spatial prediction of soil properties are not currently being fully utilized for ecological studies. Linking digital soil mapping (DSM) with ecological sites (ES) has the potential to better land management decisions by improving spatial resolution and precision as well as...

Comparative analysis of 2D and 3D distance measurements to study spatial genome organization.

PubMed

Finn, Elizabeth H; Pegoraro, Gianluca; Shachar, Sigal; Misteli, Tom

2017-07-01

The spatial organization of genomes is non-random, cell-type specific, and has been linked to cellular function. The investigation of spatial organization has traditionally relied extensively on fluorescence microscopy. The validity of the imaging methods used to probe spatial genome organization often depends on the accuracy and precision of distance measurements. Imaging-based measurements may either use 2 dimensional datasets or 3D datasets which include the z-axis information in image stacks. Here we compare the suitability of 2D vs 3D distance measurements in the analysis of various features of spatial genome organization. We find in general good agreement between 2D and 3D analysis with higher convergence of measurements as the interrogated distance increases, especially in flat cells. Overall, 3D distance measurements are more accurate than 2D distances, but are also more susceptible to noise. In particular, z-stacks are prone to error due to imaging properties such as limited resolution along the z-axis and optical aberrations, and we also find significant deviations from unimodal distance distributions caused by low sampling frequency in z. These deviations are ameliorated by significantly higher sampling frequency in the z-direction. We conclude that 2D distances are preferred for comparative analyses between cells, but 3D distances are preferred when comparing to theoretical models in large samples of cells. In general and for practical purposes, 2D distance measurements are preferable for many applications of analysis of spatial genome organization. Published by Elsevier Inc.

BATMAN: Bayesian Technique for Multi-image Analysis

NASA Astrophysics Data System (ADS)

Casado, J.; Ascasibar, Y.; García-Benito, R.; Guidi, G.; Choudhury, O. S.; Bellocchi, E.; Sánchez, S. F.; Díaz, A. I.

2017-04-01

This paper describes the Bayesian Technique for Multi-image Analysis (BATMAN), a novel image-segmentation technique based on Bayesian statistics that characterizes any astronomical data set containing spatial information and performs a tessellation based on the measurements and errors provided as input. The algorithm iteratively merges spatial elements as long as they are statistically consistent with carrying the same information (I.e. identical signal within the errors). We illustrate its operation and performance with a set of test cases including both synthetic and real integral-field spectroscopic data. The output segmentations adapt to the underlying spatial structure, regardless of its morphology and/or the statistical properties of the noise. The quality of the recovered signal represents an improvement with respect to the input, especially in regions with low signal-to-noise ratio. However, the algorithm may be sensitive to small-scale random fluctuations, and its performance in presence of spatial gradients is limited. Due to these effects, errors may be underestimated by as much as a factor of 2. Our analysis reveals that the algorithm prioritizes conservation of all the statistically significant information over noise reduction, and that the precise choice of the input data has a crucial impact on the results. Hence, the philosophy of BaTMAn is not to be used as a 'black box' to improve the signal-to-noise ratio, but as a new approach to characterize spatially resolved data prior to its analysis. The source code is publicly available at http://astro.ft.uam.es/SELGIFS/BaTMAn.

Characterization of a Quadrotor Unmanned Aircraft System for Aerosol-Particle-Concentration Measurements.

PubMed

Brady, James M; Stokes, M Dale; Bonnardel, Jim; Bertram, Timothy H

2016-02-02

High-spatial-resolution, near-surface vertical profiling of atmospheric chemical composition is currently limited by the availability of experimental platforms that can sample in constrained environments. As a result, measurements of near-surface gradients in trace gas and aerosol particle concentrations have been limited to studies conducted from fixed location towers or tethered balloons. Here, we explore the utility of a quadrotor unmanned aircraft system (UAS) as a sampling platform to measure vertical and horizontal concentration gradients of trace gases and aerosol particles at high spatial resolution (1 m) within the mixed layer (0-100 m). A 3D Robotics Iris+ autonomous quadrotor UAS was outfitted with a sensor package consisting of a two-channel aerosol optical particle counter and a CO2 sensor. The UAS demonstrated high precision in both vertical (±0.5 m) and horizontal positions (±1 m), highlighting the potential utility of quadrotor UAS drones for aerosol- and trace-gas measurements within complex terrain, such as the urban environment, forest canopies, and above difficult-to-access areas such as breaking surf. Vertical profiles of aerosol particle number concentrations, acquired from flights conducted along the California coastline, were used to constrain sea-spray aerosol-emission rates from coastal wave breaking.

Direct Imaging of Long-Range Exciton Transport in Quantum Dot Superlattices by Ultrafast Microscopy.

PubMed

Yoon, Seog Joon; Guo, Zhi; Dos Santos Claro, Paula C; Shevchenko, Elena V; Huang, Libai

2016-07-26

Long-range charge and exciton transport in quantum dot (QD) solids is a crucial challenge in utilizing QDs for optoelectronic applications. Here, we present a direct visualization of exciton diffusion in highly ordered CdSe QDs superlattices by mapping exciton population using ultrafast transient absorption microscopy. A temporal resolution of ∼200 fs and a spatial precision of ∼50 nm of this technique provide a direct assessment of the upper limit for exciton transport in QD solids. An exciton diffusion length of ∼125 nm has been visualized in the 3 ns experimental time window and an exciton diffusion coefficient of (2.5 ± 0.2) × 10(-2) cm(2) s(-1) has been measured for superlattices constructed from 3.6 nm CdSe QDs with center-to-center distance of 6.7 nm. The measured exciton diffusion constant is in good agreement with Förster resonance energy transfer theory. We have found that exciton diffusion is greatly enhanced in the superlattices over the disordered films with an order of magnitude higher diffusion coefficient, pointing toward the role of disorder in limiting transport. This study provides important understandings on energy transport mechanisms in both the spatial and temporal domains in QD solids.

On Improving CRISPR for Editing Plant Genes: Ribozyme-Mediated Guide RNA Production and Fluorescence-Based Technology for Isolating Transgene-Free Mutants Generated by CRISPR.

PubMed

He, Yubing; Wang, Rongchen; Dai, Xinhua; Zhao, Yunde

2017-01-01

CRISPR/Cas9-mediated genome editing technology has been used to successfully edit numerous genes in various organisms including plants. There are still two major challenges in using CRISPR/Cas9 technology for gene editing in plants. First, there are very limited choices of promoters that are suitable for in vivo production of single-guide RNAs (sgRNAs), which is complementary to the target sequence and which guides Cas9 to generate double-strand breaks at the target site. It is especially difficult to produce sgRNA molecules with temporal and spatial precision. Second, there is a lack of efficient methods for identifying plants that (1) contain heritable and stable mutations generated by CRISPR/Cas9, and (2) no longer harbor the CRISPR/Cas9 construct and other transgenes. In this chapter, we describe the development of a ribozyme-based strategy that enables the production of sgRNA molecules from any chosen promoter. More importantly, the ribozyme-based technology makes it feasible to produce sgRNAs with temporal and spatial precision, greatly expanding the scope and applications of CRISPR/Cas9 technology. We also developed a fluorescence-based technology that allows us to efficiently and reliably isolate Cas9-free stable Arabidopsis mutants. Thus, we provide effective protocols to overcome two important obstacles in using CRISPR/Cas9 for editing genes in plants. © 2017 Elsevier Inc. All rights reserved.

Evaluating single-pass catch as a tool for identifying spatial pattern in fish distribution

USGS Publications Warehouse

Bateman, Douglas S.; Gresswell, Robert E.; Torgersen, Christian E.

2005-01-01

We evaluate the efficacy of single-pass electrofishing without blocknets as a tool for collecting spatially continuous fish distribution data in headwater streams. We compare spatial patterns in abundance, sampling effort, and length-frequency distributions from single-pass sampling of coastal cutthroat trout (Oncorhynchus clarki clarki) to data obtained from a more precise multiple-pass removal electrofishing method in two mid-sized (500–1000 ha) forested watersheds in western Oregon. Abundance estimates from single- and multiple-pass removal electrofishing were positively correlated in both watersheds, r = 0.99 and 0.86. There were no significant trends in capture probabilities at the watershed scale (P > 0.05). Moreover, among-sample variation in fish abundance was higher than within-sample error in both streams indicating that increased precision of unit-scale abundance estimates would provide less information on patterns of abundance than increasing the fraction of habitat units sampled. In the two watersheds, respectively, single-pass electrofishing captured 78 and 74% of the estimated population of cutthroat trout with 7 and 10% of the effort. At the scale of intermediate-sized watersheds, single-pass electrofishing exhibited a sufficient level of precision to be effective in detecting spatial patterns of cutthroat trout abundance and may be a useful tool for providing the context for investigating fish-habitat relationships at multiple scales.

Dimensional metrology of micro structure based on modulation depth in scanning broadband light interferometry

NASA Astrophysics Data System (ADS)

Zhou, Yi; Tang, Yan; Deng, Qinyuan; Zhao, Lixin; Hu, Song

2017-08-01

Three-dimensional measurement and inspection is an area with growing needs and interests in many domains, such as integrated circuits (IC), medical cure, and chemistry. Among the methods, broadband light interferometry is widely utilized due to its large measurement range, noncontact and high precision. In this paper, we propose a spatial modulation depth-based method to retrieve the surface topography through analyzing the characteristics of both frequency and spatial domains in the interferogram. Due to the characteristics of spatial modulation depth, the technique could effectively suppress the negative influences caused by light fluctuations and external disturbance. Both theory and experiments are elaborated to confirm that the proposed method can greatly improve the measurement stability and sensitivity with high precision. This technique can achieve a superior robustness with the potential to be applied in online topography measurement.

Aboveground biomass mapping in French Guiana by combining remote sensing, forest inventories and environmental data

NASA Astrophysics Data System (ADS)

Fayad, Ibrahim; Baghdadi, Nicolas; Guitet, Stéphane; Bailly, Jean-Stéphane; Hérault, Bruno; Gond, Valéry; El Hajj, Mahmoud; Tong Minh, Dinh Ho

2016-10-01

Mapping forest aboveground biomass (AGB) has become an important task, particularly for the reporting of carbon stocks and changes. AGB can be mapped using synthetic aperture radar data (SAR) or passive optical data. However, these data are insensitive to high AGB levels (>150 Mg/ha, and >300 Mg/ha for P-band), which are commonly found in tropical forests. Studies have mapped the rough variations in AGB by combining optical and environmental data at regional and global scales. Nevertheless, these maps cannot represent local variations in AGB in tropical forests. In this paper, we hypothesize that the problem of misrepresenting local variations in AGB and AGB estimation with good precision occurs because of both methodological limits (signal saturation or dilution bias) and a lack of adequate calibration data in this range of AGB values. We test this hypothesis by developing a calibrated regression model to predict variations in high AGB values (mean >300 Mg/ha) in French Guiana by a methodological approach for spatial extrapolation with data from the optical geoscience laser altimeter system (GLAS), forest inventories, radar, optics, and environmental variables for spatial inter- and extrapolation. Given their higher point count, GLAS data allow a wider coverage of AGB values. We find that the metrics from GLAS footprints are correlated with field AGB estimations (R2 = 0.54, RMSE = 48.3 Mg/ha) with no bias for high values. First, predictive models, including remote-sensing, environmental variables and spatial correlation functions, allow us to obtain ;wall-to-wall; AGB maps over French Guiana with an RMSE for the in situ AGB estimates of ∼50 Mg/ha and R2 = 0.66 at a 1-km grid size. We conclude that a calibrated regression model based on GLAS with dependent environmental data can produce good AGB predictions even for high AGB values if the calibration data fit the AGB range. We also demonstrate that small temporal and spatial mismatches between field data and GLAS footprints are not a problem for regional and global calibrated regression models because field data aim to predict large and deep tendencies in AGB variations from environmental gradients and do not aim to represent high but stochastic and temporally limited variations from forest dynamics. Thus, we advocate including a greater variety of data, even if less precise and shifted, to better represent high AGB values in global models and to improve the fitting of these models for high values.

Spatial Polygamy and Contextual Exposures (SPACEs): Promoting Activity Space Approaches in Research on Place and Health.

PubMed

Matthews, Stephen A; Yang, Tse-Chuan

2013-08-01

Exposure science has developed rapidly and there is an increasing call for greater precision in the measurement of individual exposures across space and time. Social science interest in an individual's environmental exposure, broadly conceived, has arguably been quite limited conceptually and methodologically. Indeed, we appear to lag behind our exposure science colleagues in our theories, data, and methods. In this paper we discuss a framework based on the concept of spatial polygamy to demonstrate the need to collect new forms of data on human spatial behavior and contextual exposures across time and space. Adopting new data and methods will be essential if we want to better understand social inequality in terms of exposure to health risks and access to health resources. We discuss the opportunities and challenges focusing on the potential seemingly offered by focusing on human mobility, and specifically the utilization of activity space concepts and data. A goal of the paper is to spatialize social and health science concepts and research practice vis-a-vis the complexity of exposure. The paper concludes with some recommendations for future research focusing on theoretical and conceptual development, promoting research on new types of places and human movement, the dynamic nature of contexts, and on training. "When we elect wittingly or unwittingly, to work within a level … we tend to discern or construct - whichever emphasis you prefer - only those kinds of systems whose elements are confined to that level."Otis Dudley Duncan (1961, p. 141)."…despite the new ranges created by improved transportation, local government units have tended to remain medieval in size."Torsten Hägerstrand (1970, p.18)"A detective investigating a crime needs both tools and understanding. If he has no fingerprint powder, he will fail to find fingerprints on most surfaces. If he does not understand where the criminal is likely to have put his fingers, he will not look in the right places. Equally, the analyst of data needs both tools and understanding."John Tukey (1977, p.1)"When we observe the environment, we necessarily do so on only a limited number of scales."Simon Levin (1992, p. 1945)There is a desperate need to develop methods with the same precision for an individual's environmental exposure as we have for an individual's genome … even a partial, targeted understanding of exposure can provide substantial advantages."Christopher Wild (2005, p.1848).

Spatial Polygamy and Contextual Exposures (SPACEs): Promoting Activity Space Approaches in Research on Place and Health

PubMed Central

Matthews, Stephen A.; Yang, Tse-Chuan

2014-01-01

Exposure science has developed rapidly and there is an increasing call for greater precision in the measurement of individual exposures across space and time. Social science interest in an individual’s environmental exposure, broadly conceived, has arguably been quite limited conceptually and methodologically. Indeed, we appear to lag behind our exposure science colleagues in our theories, data, and methods. In this paper we discuss a framework based on the concept of spatial polygamy to demonstrate the need to collect new forms of data on human spatial behavior and contextual exposures across time and space. Adopting new data and methods will be essential if we want to better understand social inequality in terms of exposure to health risks and access to health resources. We discuss the opportunities and challenges focusing on the potential seemingly offered by focusing on human mobility, and specifically the utilization of activity space concepts and data. A goal of the paper is to spatialize social and health science concepts and research practice vis-a-vis the complexity of exposure. The paper concludes with some recommendations for future research focusing on theoretical and conceptual development, promoting research on new types of places and human movement, the dynamic nature of contexts, and on training. “When we elect wittingly or unwittingly, to work within a level … we tend to discern or construct – whichever emphasis you prefer – only those kinds of systems whose elements are confined to that level.”Otis Dudley Duncan (1961, p. 141). “…despite the new ranges created by improved transportation, local government units have tended to remain medieval in size.”Torsten Hägerstrand (1970, p.18) “A detective investigating a crime needs both tools and understanding. If he has no fingerprint powder, he will fail to find fingerprints on most surfaces. If he does not understand where the criminal is likely to have put his fingers, he will not look in the right places. Equally, the analyst of data needs both tools and understanding.”John Tukey (1977, p.1) “When we observe the environment, we necessarily do so on only a limited number of scales.”Simon Levin (1992, p. 1945) There is a desperate need to develop methods with the same precision for an individual’s environmental exposure as we have for an individual’s genome … even a partial, targeted understanding of exposure can provide substantial advantages.”Christopher Wild (2005, p.1848) PMID:24707055

A Bayesian method for assessing multiscalespecies-habitat relationships

USGS Publications Warehouse

Stuber, Erica F.; Gruber, Lutz F.; Fontaine, Joseph J.

2017-01-01

ContextScientists face several theoretical and methodological challenges in appropriately describing fundamental wildlife-habitat relationships in models. The spatial scales of habitat relationships are often unknown, and are expected to follow a multi-scale hierarchy. Typical frequentist or information theoretic approaches often suffer under collinearity in multi-scale studies, fail to converge when models are complex or represent an intractable computational burden when candidate model sets are large.ObjectivesOur objective was to implement an automated, Bayesian method for inference on the spatial scales of habitat variables that best predict animal abundance.MethodsWe introduce Bayesian latent indicator scale selection (BLISS), a Bayesian method to select spatial scales of predictors using latent scale indicator variables that are estimated with reversible-jump Markov chain Monte Carlo sampling. BLISS does not suffer from collinearity, and substantially reduces computation time of studies. We present a simulation study to validate our method and apply our method to a case-study of land cover predictors for ring-necked pheasant (Phasianus colchicus) abundance in Nebraska, USA.ResultsOur method returns accurate descriptions of the explanatory power of multiple spatial scales, and unbiased and precise parameter estimates under commonly encountered data limitations including spatial scale autocorrelation, effect size, and sample size. BLISS outperforms commonly used model selection methods including stepwise and AIC, and reduces runtime by 90%.ConclusionsGiven the pervasiveness of scale-dependency in ecology, and the implications of mismatches between the scales of analyses and ecological processes, identifying the spatial scales over which species are integrating habitat information is an important step in understanding species-habitat relationships. BLISS is a widely applicable method for identifying important spatial scales, propagating scale uncertainty, and testing hypotheses of scaling relationships.

Monitoring survival rates of Swainson's Thrush Catharus ustulatus at multiple spatial scales

USGS Publications Warehouse

Rosenberg, D.K.; DeSante, D.F.; McKelvey, K.S.; Hines, J.E.

1999-01-01

We estimated survival rates of Swainson's Thrush, a common, neotropical, migratory landbird, at multiple spatial scales, using data collected in the western USA from the Monitoring Avian Productivity and Survivorship Programme. We evaluated statistical power to detect spatially heterogeneous survival rates and exponentially declining survival rates among spatial scales with simulated populations parameterized from results of the Swainson's Thrush analyses. Models describing survival rates as constant across large spatial scales did not fit the data. The model we chose as most appropriate to describe survival rates of Swainson's Thrush allowed survival rates to vary among Physiographic Provinces, included a separate parameter for the probability that a newly captured bird is a resident individual in the study population, and constrained capture probability to be constant across all stations. Estimated annual survival rates under this model varied from 0.42 to 0.75 among Provinces. The coefficient of variation of survival estimates ranged from 5.8 to 20% among Physiographic Provinces. Statistical power to detect exponentially declining trends was fairly low for small spatial scales, although large annual declines (3% of previous year's rate) were likely to be detected when monitoring was conducted for long periods of time (e.g. 20 years). Although our simulations and field results are based on only four years of data from a limited number and distribution of stations, it is likely that they illustrate genuine difficulties inherent to broadscale efforts to monitor survival rates of territorial landbirds. In particular, our results suggest that more attention needs to be paid to sampling schemes of monitoring programmes, particularly regarding the trade-off between precision and potential bias of parameter estimates at varying spatial scales.

Geostatistical approach for management of soil nutrients with special emphasis on different forms of potassium considering their spatial variation in intensive cropping system of West Bengal, India.

PubMed

Chatterjee, Sourov; Santra, Priyabrata; Majumdar, Kaushik; Ghosh, Debjani; Das, Indranil; Sanyal, S K

2015-04-01

A large part of precision agriculture research in the developing countries is devoted towards precision nutrient management aspects. This has led to better economics and efficiency of nutrient use with off-farm advantages of environmental security. The keystone of precision nutrient management is analysis and interpretation of spatial variability of soils by establishing management zones. In this study, spatial variability of major soil nutrient contents was evaluated in the Ghoragacha village of North 24 Parganas district of West Bengal, India. Surface soil samples from 100 locations, covering different cropping systems of the village, was collected from 0 to 15 cm depth using 100×100 m grid system and analyzed in the laboratory to determine organic carbon (OC), available nitrogen (N), phosphorus (P), and potassium (K) contents of the soil as well as its water-soluble K (KWS), exchangeable K (KEX), and non-exchangeable forms of K (KNEX). Geostatistical analyses were performed to determine the spatial variation structure of each nutrient content within the village, followed by the generation of surface maps through kriging. Four commonly used semivariogram models, i.e., spherical, exponential, Gaussian, and linear models were fitted to each soil property, and the best one was used to prepare surface maps through krigging. Spherical model was found the best for available N and P contents, while linear and exponential model was the best for OC and available K, and for KWS and KNEK, Gausian model was the best. Surface maps of nutrient contents showed that N content (129-195 kg ha(-1)) was the most limiting factor throughout the village, while P status was generally very high ( 10-678 kg ha(-1)) in the soils of the present village. Among the different soil K fractions, KWS registered the maximum variability (CV 75%), while the remaining soil K fractions showed moderate to high variation. Interestingly, KNEX content also showed high variability, which essentially indicates reserve native K exploitation under intensive cultivation. These maps highlight the necessity of estimating the other soil K fractions as well for better understanding of soil K supplying capacity and K fertilization strategy rather than the current recommendations, based on the plant-available K alone. In conclusion, the present study revealed that the variability of nutrient distribution was a consequence of complex interactions between the cropping system, nutrient application rates, and the native soil characteristics, and such interactions could be utilized to develop the nutrient management strategies for intensive small-holder system.

Precision of DVC approaches for strain analysis in bone imaged with μCT at different dimensional levels.

NASA Astrophysics Data System (ADS)

Dall'Ara, Enrico; Peña-Fernández, Marta; Palanca, Marco; Giorgi, Mario; Cristofolini, Luca; Tozzi, Gianluca

2017-11-01

Accurate measurement of local strain in heterogeneous and anisotropic bone tissue is fundamental to understand the pathophysiology of musculoskeletal diseases, to evaluate the effect of interventions from preclinical studies, and to optimize the design and delivery of biomaterials. Digital volume correlation (DVC) can be used to measure the three-dimensional displacement and strain fields from micro-Computed Tomography (µCT) images of loaded specimens. However, this approach is affected by the quality of the input images, by the morphology and density of the tissue under investigation, by the correlation scheme, and by the operational parameters used in the computation. Therefore, for each application the precision of the method should be evaluated. In this paper we present the results collected from datasets analyzed in previous studies as well as new data from a recent experimental campaign for characterizing the relationship between the precision of two different DVC approaches and the spatial resolution of the outputs. Different bone structures scanned with laboratory source µCT or Synchrotron light µCT (SRµCT) were processed in zero-strain tests to evaluate the precision of the DVC methods as a function of the subvolume size that ranged from 8 to 2500 micrometers. The results confirmed that for every microstructure the precision of DVC improves for larger subvolume size, following power laws. However, for the first time large differences in the precision of both local and global DVC approaches have been highlighted when SRµCT or in vivo µCT images were used instead of conventional ex vivo µCT. These findings suggest that in situ mechanical testing protocols applied in SRµCT facilities should be optimized in order to allow DVC analyses of localized strain measurements. Moreover, for in vivo µCT applications DVC analyses should be performed only with relatively course spatial resolution for achieving a reasonable precision of the method. In conclusion, we have extensively shown that the precision of both tested DVC approaches is affected by different bone structures, different input image resolution and different subvolume sizes. Before each specific application DVC users should always apply a similar approach to find the best compromise between precision and spatial resolution of the measurements.

Achieving quantum precision limit in adaptive qubit state tomography

NASA Astrophysics Data System (ADS)

Hou, Zhibo; Zhu, Huangjun; Xiang, Guo-Yong; Li, Chuan-Feng; Guo, Guang-Can

2016-02-01

The precision limit in quantum state tomography is of great interest not only to practical applications but also to foundational studies. However, little is known about this subject in the multiparameter setting even theoretically due to the subtle information trade-off among incompatible observables. In the case of a qubit, the theoretic precision limit was determined by Hayashi as well as Gill and Massar, but attaining the precision limit in experiments has remained a challenging task. Here we report the first experiment that achieves this precision limit in adaptive quantum state tomography on optical polarisation qubits. The two-step adaptive strategy used in our experiment is very easy to implement in practice. Yet it is surprisingly powerful in optimising most figures of merit of practical interest. Our study may have significant implications for multiparameter quantum estimation problems, such as quantum metrology. Meanwhile, it may promote our understanding about the complementarity principle and uncertainty relations from the information theoretic perspective.

How tufted capuchin monkeys (Cebus apella spp) and common chimpanzees (Pan troglodytes) align objects to surfaces: Insights into spatial reasoning and implications for tool use

PubMed Central

Fragaszy, Dorothy M.; Stone, Brian; Scott, Nicole M.; Menzel, Charles

2011-01-01

This report addresses phylogenetic variation in a spatial skill that underlies tool use: aligning objects to a feature of a surface. Fragaszy and Cummins-Sebree’s [2005] model of relational spatial reasoning and Skill Development and Perception-Action theories guided the design of the study. We examined how capuchins and chimpanzees place stick objects of varying shapes into matching grooves on a flat surface. Although most individuals aligned the long axis of the object with the matching groove more often than expected by chance, all typically did so with poor precision. Some individuals managed to align a second feature, and only one (a capuchin monkey) achieved above-chance success at aligning three features with matching grooves. Our findings suggest that capuchins and chimpanzees do not reliably align objects along even one axis, and that neither species can reliably or easily master object placement tasks that require managing two or more spatial relations concurrently. Moreover, they did not systematically vary their behavior in a manner that would aid discovery of the affordances of the stick-surface combination beyond sliding the stick along the surface (which may have provided haptic information about the location of the groove). These limitations have profound consequences for the forms of tool use we can expect these individuals to master. PMID:21608008

Digital holographic tomography method for 3D observation of domain patterns in ferroelectric single crystals

NASA Astrophysics Data System (ADS)

Mokrý, Pavel; Psota, Pavel; Steiger, Kateřina; Václavík, Jan; Vápenka, David; Doleček, Roman; Vojtíšek, Petr; Sládek, Juraj; Lédl, Vít.

2016-11-01

We report on the development and implementation of the digital holographic tomography for the three-dimensio- nal (3D) observations of the domain patterns in the ferroelectric single crystals. Ferroelectric materials represent a group of materials, whose macroscopic dielectric, electromechanical, and elastic properties are greatly in uenced by the presence of domain patterns. Understanding the role of domain patterns on the aforementioned properties require the experimental techniques, which allow the precise 3D measurements of the spatial distribution of ferroelectric domains in the single crystal. Unfortunately, such techniques are rather limited at this time. The most frequently used piezoelectric atomic force microscopy allows 2D observations on the ferroelectric sample surface. Optical methods based on the birefringence measurements provide parameters of the domain patterns averaged over the sample volume. In this paper, we analyze the possibility that the spatial distribution of the ferroelectric domains can be obtained by means of the measurement of the wavefront deformation of the transmitted optical wave. We demonstrate that the spatial distribution of the ferroelectric domains can be determined by means of the measurement of the spatial distribution of the refractive index. Finally, it is demonstrated that the measurements of wavefront deformations generated in ferroelectric polydomain systems with small variations of the refractive index provide data, which can be further processed by means of the conventional tomographic methods.

Efficient receptive field tiling in primate V1

PubMed Central

Nauhaus, Ian; Nielsen, Kristina J.; Callaway, Edward M.

2017-01-01

The primary visual cortex (V1) encodes a diverse set of visual features, including orientation, ocular dominance (OD) and spatial frequency (SF), whose joint organization must be precisely structured to optimize coverage within the retinotopic map. Prior experiments have only identified efficient coverage based on orthogonal maps. Here, we used two-photon calcium imaging to reveal an alternative arrangement for OD and SF maps in macaque V1; their gradients run parallel but with unique spatial periods, whereby low SF regions coincide with monocular regions. Next, we mapped receptive fields and find surprisingly precise micro-retinotopy that yields a smaller point-image and requires more efficient inter-map geometry, thus underscoring the significance of map relationships. While smooth retinotopy is constraining, studies suggest that it improves both wiring economy and the V1 population code read downstream. Altogether, these data indicate that connectivity within V1 is finely tuned and precise at the level of individual neurons. PMID:27499086

How Visuo-Spatial Mental Imagery Develops: Image Generation and Maintenance

PubMed Central

Wimmer, Marina C.; Maras, Katie L.; Robinson, Elizabeth J; Doherty, Martin J; Pugeault, Nicolas

2015-01-01

Two experiments examined the nature of visuo-spatial mental imagery generation and maintenance in 4-, 6-, 8-, 10-year old children and adults (N = 211). The key questions were how image generation and maintenance develop (Experiment 1) and how accurately children and adults coordinate mental and visually perceived images (Experiment 2). Experiment 1 indicated that basic image generation and maintenance abilities are present at 4 years of age but the precision with which images are generated and maintained improves particularly between 4 and 8 years. In addition to increased precision, Experiment 2 demonstrated that generated and maintained mental images become increasingly similar to visually perceived objects. Altogether, findings suggest that for simple tasks demanding image generation and maintenance, children attain adult-like precision younger than previously reported. This research also sheds new light on the ability to coordinate mental images with visual images in children and adults. PMID:26562296

Spatial distribution of nymphs of Scaphoideus titanus (Homoptera: Cicadellidae) in grapes, and evaluation of sequential sampling plans.

PubMed

Lessio, Federico; Alma, Alberto

2006-04-01

The spatial distribution of the nymphs of Scaphoideus titanus Ball (Homoptera Cicadellidae), the vector of grapevine flavescence dorée (Candidatus Phytoplasma vitis, 16Sr-V), was studied by applying Taylor's power law. Studies were conducted from 2002 to 2005, in organic and conventional vineyards of Piedmont, northern Italy. Minimum sample size and fixed precision level stop lines were calculated to develop appropriate sampling plans. Model validation was performed, using independent field data, by means of Resampling Validation of Sample Plans (RVSP) resampling software. The nymphal distribution, analyzed via Taylor's power law, was aggregated, with b = 1.49. A sample of 32 plants was adequate at low pest densities with a precision level of D0 = 0.30; but for a more accurate estimate (D0 = 0.10), the required sample size needs to be 292 plants. Green's fixed precision level stop lines seem to be more suitable for field sampling: RVSP simulations of this sampling plan showed precision levels very close to the desired levels. However, at a prefixed precision level of 0.10, sampling would become too time-consuming, whereas a precision level of 0.25 is easily achievable. How these results could influence the correct application of the compulsory control of S. titanus and Flavescence dorée in Italy is discussed.

Precision Requirements for Space-based XCO2 Data

NASA Technical Reports Server (NTRS)

Miller, C. E.; Crisp, D.; DeCola, P. C.; Olsen, S. C.; Randerson, J. T.; Rayner, P.; Jacob, D.J.; Jones, D.; Suntharalingam, P.

2005-01-01

Precision requirements have been determined for the column-averaged CO2 dry air mole fraction (X(sub CO2)) data products to be delivered by the Orbiting Carbon Observatory (OCO). These requirements result from an assessment of the amplitude and spatial gradients in X(sub CO2), the relationship between X(sub CO2) precision and surface CO2 flux uncertainties calculated from inversions of the X(sub CO2) data, and the effects of X,,Z biases on CO2 flux inversions. Observing system simulation experiments and synthesis inversion modeling demonstrate that the OCO mission design and sampling strategy provide the means to achieve the X(sub CO2) precision requirements. The impact of X(sub CO2) biases on CO2 flux uncertainties depend on their spatial and temporal extent since CO2 sources and sinks are inferred from regional-scale X(sub CO2) gradients. Simulated OCO sampling of the TRACE-P CO2 fields shows the ability of X(sub CO2) data to constrain CO2 flux inversions over Asia and distinguish regional fluxes from India and China.

Research and development of a control system for multi axis cooperative motion based on PMAC

NASA Astrophysics Data System (ADS)

Guo, Xiao-xiao; Dong, Deng-feng; Zhou, Wei-hu

2017-10-01

Based on Programmable Multi-axes Controller (PMAC), a design of a multi axis motion control system for the simulator of spatial targets' dynamic optical properties is proposed. According to analysis the properties of spatial targets' simulator motion control system, using IPC as the main control layer, TurboPMAC2 as the control layer to meet coordinated motion control, data acquisition and analog output. A simulator using 5 servomotors which is connected with speed reducers to drive the output axis was implemented to simulate the motion of both the sun and the space target. Based on PMAC using PID and a notch filter algorithm, negative feedback, the speed and acceleration feed forward algorithm to satisfy the axis' requirements of the good stability and high precision at low speeds. In the actual system, it shows that the velocity precision is higher than 0.04 s ° and the precision of repetitive positioning is better than 0.006° when each axis is at a low-speed. Besides, the system achieves the control function of multi axis coordinated motion. The design provides an important technical support for detecting spatial targets, also promoting the theoretical research.

On the use of particle filters for electromagnetic tracking in high dose rate brachytherapy

NASA Astrophysics Data System (ADS)

Götz, Th I.; Lahmer, G.; Brandt, T.; Kallis, K.; Strnad, V.; Bert, Ch; Hensel, B.; Tomé, A. M.; Lang, E. W.

2017-10-01

Modern radiotherapy of female breast cancers often employs high dose rate brachytherapy, where a radioactive source is moved inside catheters, implanted in the female breast, according to a prescribed treatment plan. Source localization relative to the patient’s anatomy is determined with solenoid sensors whose spatial positions are measured with an electromagnetic tracking system. Precise sensor dwell position determination is of utmost importance to assure irradiation of the cancerous tissue according to the treatment plan. We present a hybrid data analysis system which combines multi-dimensional scaling with particle filters to precisely determine sensor dwell positions in the catheters during subsequent radiation treatment sessions. Both techniques are complemented with empirical mode decomposition for the removal of superimposed breathing artifacts. We show that the hybrid model robustly and reliably determines the spatial positions of all catheters used during the treatment and precisely determines any deviations of actual sensor dwell positions from the treatment plan. The hybrid system only relies on sensor positions measured with an EMT system and relates them to the spatial positions of the implanted catheters as initially determined with a computed x-ray tomography.

A Low Cost Automated Monitoring System for Landslides Using Dual Frequency GPS

NASA Astrophysics Data System (ADS)

Mills, H.; Edwards, S.

2006-12-01

Landslides are an existing and permanent threat to societies across the globe, generating financial and human losses whenever and wherever they occur. Drawing together the strands of science that provide increased understanding of landslide triggers through accurate modelling is therefore vital for the development of mitigation and management strategies. Together with climatic and geomorphological data a key input here is information on the precise location and timing of landslide events. However, the detailed monitoring of landslides and precursor movements is generally limited to episodic campaigns where limiting factors include equipment and mobilisation costs, time constraints and spatial resolution. This research has developed a geodetic tool of benefit to scientists involved in the development of closely coupled models that seek to explain trigger mechanisms such as rainfall duration and intensity and changes in groundwater pressure to actual real land movements. A fully automated low cost dual frequency GPS station for the continuous in-situ monitoring of landslide sites has been developed. System configuration combines a dual frequency GPS receiver, PC board with a GPRS modem and power supply to deliver 24hr/365day operation capability. Individual components have been chosen to provide the highest accuracies while minimising power consumption resulting in a system around half that of equivalent commercial systems. Measurement point-costs can be further reduced through the use of antenna switching and multi antenna arrays. Continuous data is delivered via mobile phone uplink and processed automatically using geodetic software. The developed system has been extensively tested on a purpose built platform capable of simulating ground movements. Co-mounted antennas have allowed direct comparisons with more expensive geodetic GPS receivers. The system is capable of delivering precise 3D coordinates with a 9 mm rms. The system can be up-scaled resulting in the increased spatial density of monitoring and yielding more detailed information on landslide movements for improved downstream modelling and monitoring.

Volatile organic compounds at two oil and natural gas production well pads in Colorado and Texas using passive samplers.

PubMed

Eisele, Adam P; Mukerjee, Shaibal; Smith, Luther A; Thoma, Eben D; Whitaker, Donald A; Oliver, Karen D; Wu, Tai; Colon, Maribel; Alston, Lillian; Cousett, Tamira A; Miller, Michael C; Smith, Donald M; Stallings, Casson

2016-04-01

A pilot study was conducted in application of the U.S. Environmental Protection Agency (EPA) Methods 325A/B variant for monitoring volatile organic compounds (VOCs) near two oil and natural gas (ONG) production well pads in the Texas Barnett Shale formation and Colorado Denver-Julesburg Basin (DJB), along with a traffic-dominated site in downtown Denver, CO. As indicated in the EPA method, VOC concentrations were measured for 14-day sampling periods using passive-diffusive tube samplers with Carbopack X sorbent at fenceline perimeter and other locations. VOCs were significantly higher at the DJB well pad versus the Barnett well pad and were likely due to higher production levels at the DJB well pad during the study. Benzene and toluene were significantly higher at the DJB well pad versus downtown Denver. Except for perchloroethylene, VOCs measured at passive sampler locations (PSs) along the perimeter of the Barnett well pad were significantly higher than PSs farther away. At the DJB well pad, most VOC concentrations, except perchloroethylene, were significantly higher prior to operational changes than after these changes were made. Though limited, the results suggest passive samplers are precise (duplicate precision usually ≤10%) and that they can be useful to assess spatial gradients and operational conditions at well pad locations over time-integrated periods. Recently enacted EPA Methods 325A/B use passive-diffusive tube samplers to measure benzene at multiple fenceline locations at petrochemical refineries. This pilot study presents initial data demonstrating the utility of Methods 325A/B for monitoring at ONG facilities. Measurements revealed elevated concentrations reflective of production levels and spatial gradients of VOCs relative to source proximity at the Barnett well pad, as well as operational changes at the DJB well pad. Though limited, these findings indicate that Methods 325A/B can be useful in application to characterize VOCs at well pad boundaries.

Spatiotemporal modelling of groundwater extraction in semi-arid central Queensland, Australia

NASA Astrophysics Data System (ADS)

Keir, Greg; Bulovic, Nevenka; McIntyre, Neil

2016-04-01

The semi-arid Surat Basin in central Queensland, Australia, forms part of the Great Artesian Basin, a groundwater resource of national significance. While this area relies heavily on groundwater supply bores to sustain agricultural industries and rural life in general, measurement of groundwater extraction rates is very limited. Consequently, regional groundwater extraction rates are not well known, which may have implications for regional numerical groundwater modelling. However, flows from a small number of bores are metered, and less precise anecdotal estimates of extraction are increasingly available. There is also an increasing number of other spatiotemporal datasets which may help predict extraction rates (e.g. rainfall, temperature, soils, stocking rates etc.). These can be used to construct spatial multivariate regression models to estimate extraction. The data exhibit complicated statistical features, such as zero-valued observations, non-Gaussianity, and non-stationarity, which limit the use of many classical estimation techniques, such as kriging. As well, water extraction histories may exhibit temporal autocorrelation. To account for these features, we employ a separable space-time model to predict bore extraction rates using the R-INLA package for computationally efficient Bayesian inference. A joint approach is used to model both the probability (using a binomial likelihood) and magnitude (using a gamma likelihood) of extraction. The correlation between extraction rates in space and time is modelled using a Gaussian Markov Random Field (GMRF) with a Matérn spatial covariance function which can evolve over time according to an autoregressive model. To reduce computational burden, we allow the GMRF to be evaluated at a relatively coarse temporal resolution, while still allowing predictions to be made at arbitrarily small time scales. We describe the process of model selection and inference using an information criterion approach, and present some preliminary results from the study area. We conclude by discussing issues related with upscaling of the modelling approach to the entire basin, including merging of extraction rate observations with different precision, temporal resolution, and even potentially different likelihoods.

Fast, High-Precision Optical Polarization Synthesizer for Ultracold-Atom Experiments

NASA Astrophysics Data System (ADS)

Robens, Carsten; Brakhane, Stefan; Alt, Wolfgang; Meschede, Dieter; Zopes, Jonathan; Alberti, Andrea

2018-03-01

We present a technique for the precision synthesis of arbitrary polarization states of light with a high modulation bandwidth. Our approach consists of superimposing two laser light fields with the same wavelength, but with opposite circular polarizations, where the phase and the amplitude of each light field are individually controlled. We find that the polarization-synthesized beam reaches a degree of polarization of 99.99%, which is mainly limited by static spatial variations of the polarization state over the beam profile. We also find that the depolarization caused by temporal fluctuations of the polarization state is about 2 orders of magnitude smaller. In a recent work, Robens et al. [Low-Entropy States of Neutral Atoms in Polarization-Synthesized Optical Lattices, Phys. Rev. Lett. 118, 065302 (2017), 10.1103/PhysRevLett.118.065302] demonstrated an application of the polarization synthesizer to create two independently controllable optical lattices which trap atoms depending on their internal spin state. We use ultracold atoms in polarization-synthesized optical lattices to give an independent, in situ demonstration of the performance of the polarization synthesizer.

Model-independent curvature determination with 21 cm intensity mapping experiments

NASA Astrophysics Data System (ADS)

Witzemann, Amadeus; Bull, Philip; Clarkson, Chris; Santos, Mario G.; Spinelli, Marta; Weltman, Amanda

2018-06-01

Measurements of the spatial curvature of the Universe have improved significantly in recent years, but still tend to require strong assumptions to be made about the equation of state of dark energy (DE) in order to reach sub-percent precision. When these assumptions are relaxed, strong degeneracies arise that make it hard to disentangle DE and curvature, degrading the constraints. We show that forthcoming 21 cm intensity mapping experiments such as Hydrogen Intensity and Real-time Analysis eXperiment (HIRAX) are ideally designed to carry out model-independent curvature measurements, as they can measure the clustering signal at high redshift with sufficient precision to break many of the degeneracies. We consider two different model-independent methods, based on `avoiding' the DE-dominated regime and non-parametric modelling of the DE equation of state, respectively. Our forecasts show that HIRAX will be able to improve upon current model-independent constraints by around an order of magnitude, reaching percent-level accuracy even when an arbitrary DE equation of state is assumed. In the same model-independent analysis, the sample variance limit for a similar survey is another order of magnitude better.

Fixed Target combined with Spectral Mapping: Approaching 100% Hit Rates for Serial Crystallography

PubMed Central

Pare-Labrosse, Olivier; Kuo, Anling; Marx, Alexander; Epp, Sascha W.; Sherrell, Darren A.; Eger, Bryan T.; Zhong, Yinpeng; Loch, Rolf; Mariani, Valerio; Alonso-Mori, Roberto; Nelson, Silke; Lemke, Henrik T.; Owen, Robin L.; Pearson, Arwen R.; Stuart, David I.; Ernst, Oliver P.; Mueller-Werkmeister, Henrike M.; Miller, R. J. Dwayne

2018-01-01

The advent of ultrafast highly brilliant coherent X-ray Free Electron Laser sources has driven the development of novel structure determination approaches for proteins, and promises visualisation of protein dynamics on the fastest timescales with full atomic resolution. Significant efforts are being applied to the development of sample delivery systems that allow these unique sources to be most efficiently exploited for high throughput serial femtosecond crystallography. We present here the next generation of a fixed target crystallography chip designed for rapid and reliable delivery of up to 11,259 protein crystals with high spatial precision. An experimental scheme for predetermining the positions of crystals in the chip by means of in-situ spectroscopy using a fiducial system for rapid, precise alignment and registration of the crystal positions is presented. This delivers unprecedented performance in serial crystallography experiments at room temperature under atmospheric pressure with a raw hit rate approaching 100% with an effective indexing rate of approximately 50%, increasing the efficiency of beam usage, and allowing the method to be applied to systems where the number of crystals is limited. PMID:27487825

Model-independent curvature determination with 21cm intensity mapping experiments

NASA Astrophysics Data System (ADS)

Witzemann, Amadeus; Bull, Philip; Clarkson, Chris; Santos, Mario G.; Spinelli, Marta; Weltman, Amanda

2018-04-01

Measurements of the spatial curvature of the Universe have improved significantly in recent years, but still tend to require strong assumptions to be made about the equation of state of dark energy (DE) in order to reach sub-percent precision. When these assumptions are relaxed, strong degeneracies arise that make it hard to disentangle DE and curvature, degrading the constraints. We show that forthcoming 21cm intensity mapping experiments such as HIRAX are ideally designed to carry out model-independent curvature measurements, as they can measure the clustering signal at high redshift with sufficient precision to break many of the degeneracies. We consider two different model-independent methods, based on `avoiding' the DE-dominated regime and non-parametric modelling of the DE equation of state respectively. Our forecasts show that HIRAX will be able to improve upon current model-independent constraints by around an order of magnitude, reaching percent-level accuracy even when an arbitrary DE equation of state is assumed. In the same model-independent analysis, the sample variance limit for a similar survey is another order of magnitude better.

Fixed target combined with spectral mapping: approaching 100% hit rates for serial crystallography.

PubMed

Oghbaey, Saeed; Sarracini, Antoine; Ginn, Helen M; Pare-Labrosse, Olivier; Kuo, Anling; Marx, Alexander; Epp, Sascha W; Sherrell, Darren A; Eger, Bryan T; Zhong, Yinpeng; Loch, Rolf; Mariani, Valerio; Alonso-Mori, Roberto; Nelson, Silke; Lemke, Henrik T; Owen, Robin L; Pearson, Arwen R; Stuart, David I; Ernst, Oliver P; Mueller-Werkmeister, Henrike M; Miller, R J Dwayne

2016-08-01

The advent of ultrafast highly brilliant coherent X-ray free-electron laser sources has driven the development of novel structure-determination approaches for proteins, and promises visualization of protein dynamics on sub-picosecond timescales with full atomic resolution. Significant efforts are being applied to the development of sample-delivery systems that allow these unique sources to be most efficiently exploited for high-throughput serial femtosecond crystallography. Here, the next iteration of a fixed-target crystallography chip designed for rapid and reliable delivery of up to 11 259 protein crystals with high spatial precision is presented. An experimental scheme for predetermining the positions of crystals in the chip by means of in situ spectroscopy using a fiducial system for rapid, precise alignment and registration of the crystal positions is presented. This delivers unprecedented performance in serial crystallography experiments at room temperature under atmospheric pressure, giving a raw hit rate approaching 100% with an effective indexing rate of approximately 50%, increasing the efficiency of beam usage and allowing the method to be applied to systems where the number of crystals is limited.

Detection of the lunar body tide by the Lunar Orbiter Laser Altimeter.

PubMed

Mazarico, Erwan; Barker, Michael K; Neumann, Gregory A; Zuber, Maria T; Smith, David E

2014-04-16

The Lunar Orbiter Laser Altimeter instrument onboard the Lunar Reconnaissance Orbiter spacecraft collected more than 5 billion measurements in the nominal 50 km orbit over ∼10,000 orbits. The data precision, geodetic accuracy, and spatial distribution enable two-dimensional crossovers to be used to infer relative radial position corrections between tracks to better than ∼1 m. We use nearly 500,000 altimetric crossovers to separate remaining high-frequency spacecraft trajectory errors from the periodic radial surface tidal deformation. The unusual sampling of the lunar body tide from polar lunar orbit limits the size of the typical differential signal expected at ground track intersections to ∼10 cm. Nevertheless, we reliably detect the topographic tidal signal and estimate the associated Love number h 2 to be 0.0371 ± 0.0033, which is consistent with but lower than recent results from lunar laser ranging. Altimetric data are used to create radial constraints on the tidal deformationThe body tide amplitude is estimated from the crossover dataThe estimated Love number is consistent with previous estimates but more precise.

High-accuracy 3D measurement system based on multi-view and structured light

NASA Astrophysics Data System (ADS)

Li, Mingyue; Weng, Dongdong; Li, Yufeng; Zhang, Longbin; Zhou, Haiyun

2013-12-01

3D surface reconstruction is one of the most important topics in Spatial Augmented Reality (SAR). Using structured light is a simple and rapid method to reconstruct the objects. In order to improve the precision of 3D reconstruction, we present a high-accuracy multi-view 3D measurement system based on Gray-code and Phase-shift. We use a camera and a light projector that casts structured light patterns on the objects. In this system, we use only one camera to take photos on the left and right sides of the object respectively. In addition, we use VisualSFM to process the relationships between each perspective, so the camera calibration can be omitted and the positions to place the camera are no longer limited. We also set appropriate exposure time to make the scenes covered by gray-code patterns more recognizable. All of the points above make the reconstruction more precise. We took experiments on different kinds of objects, and a large number of experimental results verify the feasibility and high accuracy of the system.

2011 Laser Diagnostics in Combustion Gordon Research Conference, (August 14-19, 2011, Waterville Valley Resort, Waterville Valley, NH)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas Settersten

2011-08-19

The vast majority of the world's energy needs are met by combustion of fossil fuels. Optimum utilization of limited resources and control of emissions of pollutants and greenhouse gases demand sustained improvement of combustion technology. This task can be satisfied only by detailed knowledge of the underlying physical and chemical processes. Non-intrusive laser diagnostics continuously contribute to our growing understanding of these complex and coupled multi-scale processes. The GRC on Laser Diagnostics in Combustion focuses on the most recent scientific advances and brings together scientists and engineers working at the leading edge of combustion research. Major tasks of the communitymore » are developing and applying methods for precise and accurate measurements of fluid motion and temperatures; chemical compositions; multi-phase phenomena appearing near walls, in spray and sooting combustion; improving sensitivities, precision, spatial resolution and tracking transients in their spatio-temporal development. The properties and behaviour of novel laser sources, detectors, optical systems that lead to new diagnostic capabilities are also part of the conference program.« less

Controlled Living Nanowire Growth: Precise Control over the Morphology and Optical Properties of AgAuAg Bimetallic Nanowires

PubMed Central

2015-01-01

Inspired by the concept of living polymerization reaction, we are able to produce silver–gold–silver nanowires with a precise control over their total length and plasmonic properties by establishing a constant silver deposition rate on the tips of penta-twinned gold nanorods used as seed cores. Consequently, the length of the wires increases linearly in time. Starting with ∼210 nm × 32 nm gold cores, we produce nanowire lengths up to several microns in a highly controlled manner, with a small self-limited increase in thickness of ∼4 nm, corresponding to aspect ratios above 100, whereas the low polydispersity of the product allows us to detect up to nine distinguishable plasmonic resonances in a single colloidal solution. We analyze the spatial distribution and the nature of the plasmons by electron energy loss spectroscopy and obtain excellent agreement between measurements and electromagnetic simulations, clearly demonstrating that the presence of the gold core plays a marginal role, except for relatively short wires or high-energy modes. PMID:26134470

Instrument-induced spatial crosstalk deconvolution algorithm

NASA Technical Reports Server (NTRS)

Wright, Valerie G.; Evans, Nathan L., Jr.

1986-01-01

An algorithm has been developed which reduces the effects of (deconvolves) instrument-induced spatial crosstalk in satellite image data by several orders of magnitude where highly precise radiometry is required. The algorithm is based upon radiance transfer ratios which are defined as the fractional bilateral exchange of energy betwen pixels A and B.

Spatial and temporal distribution of trunk-injected imidacloprid in apple tree canopies.

PubMed

Aćimović, Srđan G; VanWoerkom, Anthony H; Reeb, Pablo D; Vandervoort, Christine; Garavaglia, Thomas; Cregg, Bert M; Wise, John C

2014-11-01

Pesticide use in orchards creates drift-driven pesticide losses which contaminate the environment. Trunk injection of pesticides as a target-precise delivery system could greatly reduce pesticide losses. However, pesticide efficiency after trunk injection is associated with the underinvestigated spatial and temporal distribution of the pesticide within the tree crown. This study quantified the spatial and temporal distribution of trunk-injected imidacloprid within apple crowns after trunk injection using one, two, four or eight injection ports per tree. The spatial uniformity of imidacloprid distribution in apple crowns significantly increased with more injection ports. Four ports allowed uniform spatial distribution of imidacloprid in the crown. Uniform and non-uniform spatial distributions were established early and lasted throughout the experiment. The temporal distribution of imidacloprid was significantly non-uniform. Upper and lower crown positions did not significantly differ in compound concentration. Crown concentration patterns indicated that imidacloprid transport in the trunk occurred through radial diffusion and vertical uptake with a spiral pattern. By showing where and when a trunk-injected compound is distributed in the apple tree canopy, this study addresses a key knowledge gap in terms of explaining the efficiency of the compound in the crown. These findings allow the improvement of target-precise pesticide delivery for more sustainable tree-based agriculture. © 2014 Society of Chemical Industry.

Resolution, the key to unlocking granite petrogenesis using zircon U-Pb - Lu-Hf studies

NASA Astrophysics Data System (ADS)

Tapster, Simon; Horstwood, Matthew; Roberts, Nick M. W.; Deady, Eimear; Shail, Robin

2017-04-01

Coarse-scale understanding of crustal evolution and source contributions to igneous systems has been drastically enhanced by coupled zircon U-Pb and Lu-Hf data sets. These are now common place and potentially offer advantages over whole-rock analyses by resolving heterogeneous source components in the complex crystal cargos of single hand-samples. However, the application of coupled zircon U-Pb and Lu-Hf studies to address detailed petrogenetic questions faces a crisis of resolution - On the one hand, micro-beam analytical techniques have high spatial resolution, capable of interrogating crystals with complex growth histories. Yet, the >1-2% temporal resolution of these techniques places a fundamental limitation on their utility for developing petrogenetic models. This limitation in data interpretation arises from timescales of crystal recycling or changes in source evolution that are often shorter than the U-Pb analytical precision. Conversely, high-precision CA-ID-TIMS U-Pb analysis of single whole zircons and solution MC-ICP-MS Lu-Hf isotopes of column washes (Hf masses equating to ca. 10-50 ng) have much greater temporal resolution (<0.1%), yet lack the spatial resolution to deal with complex crystal growth. Analyses homogenize any heterogeneity within the zircon and convolute the petrogenetic model. A balance must be struck between spatial and temporal resolution to address petrogenetic issues. Here, we demonstrate that micro-sampling of complex xenocryst-rich zircon crystals (e.g. <40 µm zircon tips) from the granitic post-Variscan Cornubian Batholith (SW England), in tandem with low-common Pb blank CA-ID-TIMS U-Pb chemistry, permits the analysis of zircon volumes that approach those of LA-ICPMS analyses, whilst simultaneously retaining the majority of the temporal resolution associated with the CA-ID-TIMS U-Pb technique. The low volume of zircon within these analyses may only provide <5 ng Hf, and therefore gaining useful precision from Lu-Hf isotopes is beyond the scope of typical solution MC-ICP-MS techniques. However, we demonstrate that an uncertainty level of ca. 1 ɛHf can be achieved with as little as 0.4 ng Hf through the use of low-volume solution introduction methods - thus bridging the gap in resolving power between in-situ and isotope dilution coupled zircon U-Pb - Lu-Hf studies. We demonstrate the potential of this approach to unravel intra- and inter-sample heterogeneity and address models for granite genesis using a new regional data set for 21 samples encompassing all major granite types within the Early Permian Cornubian Batholith (SW England). The data provide a refined chronological framework for magma source evolution over 20 Myrs of crust-mantle melt extraction and upper crustal batholith construction. The resulting petrogenetic model will also be evaluated through the lens of low- temporal resolution commonly employed in granitic zircon U-Pb - Lu-Hf studies in order to highlight the enhanced insights into geological processes gained though our approach. The current limitations to data interpretation and directions of future research will be discussed.

Spatial variability of organic layer thickness and carbon stocks in mature boreal forest stands--implications and suggestions for sampling designs.

PubMed

Kristensen, Terje; Ohlson, Mikael; Bolstad, Paul; Nagy, Zoltan

2015-08-01

Accurate field measurements from inventories across fine spatial scales are critical to improve sampling designs and to increase the precision of forest C cycling modeling. By studying soils undisturbed from active forest management, this paper gives a unique insight in the naturally occurring variability of organic layer C and provides valuable references against which subsequent and future sampling schemes can be evaluated. We found that the organic layer C stocks displayed great short-range variability with spatial autocorrelation distances ranging from 0.86 up to 2.85 m. When spatial autocorrelations are known, we show that a minimum of 20 inventory samples separated by ∼5 m is needed to determine the organic layer C stock with a precision of ±0.5 kg C m(-2). Our data also demonstrates a strong relationship between the organic layer C stock and horizon thickness (R (2) ranging from 0.58 to 0.82). This relationship suggests that relatively inexpensive measurements of horizon thickness can supplement soil C sampling, by reducing the number of soil samples collected, or to enhance the spatial resolution of organic layer C mapping.

Animation of natural scene by virtual eye-movements evokes high precision and low noise in V1 neurons

PubMed Central

Baudot, Pierre; Levy, Manuel; Marre, Olivier; Monier, Cyril; Pananceau, Marc; Frégnac, Yves

2013-01-01

Synaptic noise is thought to be a limiting factor for computational efficiency in the brain. In visual cortex (V1), ongoing activity is present in vivo, and spiking responses to simple stimuli are highly unreliable across trials. Stimulus statistics used to plot receptive fields, however, are quite different from those experienced during natural visuomotor exploration. We recorded V1 neurons intracellularly in the anaesthetized and paralyzed cat and compared their spiking and synaptic responses to full field natural images animated by simulated eye-movements to those evoked by simpler (grating) or higher dimensionality statistics (dense noise). In most cells, natural scene animation was the only condition where high temporal precision (in the 10–20 ms range) was maintained during sparse and reliable activity. At the subthreshold level, irregular but highly reproducible membrane potential dynamics were observed, even during long (several 100 ms) “spike-less” periods. We showed that both the spatial structure of natural scenes and the temporal dynamics of eye-movements increase the signal-to-noise ratio by a non-linear amplification of the signal combined with a reduction of the subthreshold contextual noise. These data support the view that the sparsening and the time precision of the neural code in V1 may depend primarily on three factors: (1) broadband input spectrum: the bandwidth must be rich enough for recruiting optimally the diversity of spatial and time constants during recurrent processing; (2) tight temporal interplay of excitation and inhibition: conductance measurements demonstrate that natural scene statistics narrow selectively the duration of the spiking opportunity window during which the balance between excitation and inhibition changes transiently and reversibly; (3) signal energy in the lower frequency band: a minimal level of power is needed below 10 Hz to reach consistently the spiking threshold, a situation rarely reached with visual dense noise. PMID:24409121

Animation of natural scene by virtual eye-movements evokes high precision and low noise in V1 neurons.

PubMed

Baudot, Pierre; Levy, Manuel; Marre, Olivier; Monier, Cyril; Pananceau, Marc; Frégnac, Yves

2013-01-01

Synaptic noise is thought to be a limiting factor for computational efficiency in the brain. In visual cortex (V1), ongoing activity is present in vivo, and spiking responses to simple stimuli are highly unreliable across trials. Stimulus statistics used to plot receptive fields, however, are quite different from those experienced during natural visuomotor exploration. We recorded V1 neurons intracellularly in the anaesthetized and paralyzed cat and compared their spiking and synaptic responses to full field natural images animated by simulated eye-movements to those evoked by simpler (grating) or higher dimensionality statistics (dense noise). In most cells, natural scene animation was the only condition where high temporal precision (in the 10-20 ms range) was maintained during sparse and reliable activity. At the subthreshold level, irregular but highly reproducible membrane potential dynamics were observed, even during long (several 100 ms) "spike-less" periods. We showed that both the spatial structure of natural scenes and the temporal dynamics of eye-movements increase the signal-to-noise ratio by a non-linear amplification of the signal combined with a reduction of the subthreshold contextual noise. These data support the view that the sparsening and the time precision of the neural code in V1 may depend primarily on three factors: (1) broadband input spectrum: the bandwidth must be rich enough for recruiting optimally the diversity of spatial and time constants during recurrent processing; (2) tight temporal interplay of excitation and inhibition: conductance measurements demonstrate that natural scene statistics narrow selectively the duration of the spiking opportunity window during which the balance between excitation and inhibition changes transiently and reversibly; (3) signal energy in the lower frequency band: a minimal level of power is needed below 10 Hz to reach consistently the spiking threshold, a situation rarely reached with visual dense noise.

An Astronomical Test of CCD Photometric Precision

NASA Technical Reports Server (NTRS)

Koch, David G.; Dunham, Edward W.; Borucki, William J.; Jenkins, Jon M.

2001-01-01

Ground-based differential photometry is limited to a precision of order 10(exp -3) because of atmospheric effects. A space-based photometer should be limited only by the inherent instrument precision and shot noise. Laboratory tests have shown that a precision of order 10-5 is achievable with commercially available charged coupled devices (CCDs). We have proposed to take this one step further by performing measurements at a telescope using a Wollaston prism as a beam splitter First-order atmospheric effects (e.g., extinction) will appear to be identical in the two images of each star formed by the prism and will be removed in the data analysis. This arrangement can determine the precision that is achievable under the influence of second-order atmospheric effects (e.g., variable point-spread function (PSF) from seeing). These telescopic observations will thus provide a lower limit to the precision that can be realized by a space-based differential photometer.

Open questions in surface topography measurement: a roadmap

NASA Astrophysics Data System (ADS)

Leach, Richard; Evans, Christopher; He, Liangyu; Davies, Angela; Duparré, Angela; Henning, Andrew; Jones, Christopher W.; O'Connor, Daniel

2015-03-01

Control of surface topography has always been of vital importance for manufacturing and many other engineering and scientific disciplines. However, despite over one hundred years of quantitative surface topography measurement, there are still many open questions. At the top of the list of questions is ‘Are we getting the right answer?’ This begs the obvious question ‘How would we know?’ There are many other questions relating to applications, the appropriateness of a technique for a given scenario, or the relationship between a particular analysis and the function of the surface. In this first ‘open questions’ article we have gathered together some experts in surface topography measurement and asked them to address timely, unresolved questions about the subject. We hope that their responses will go some way to answer these questions, address areas where further research is required, and look at the future of the subject. The first section ‘Spatial content characterization for precision surfaces’ addresses the need to characterise the spatial content of precision surfaces. Whilst we have been manufacturing optics for centuries, there still isn’t a consensus on how to specify the surface for manufacture. The most common three methods for spatial characterisation are reviewed and compared, and the need for further work on quantifying measurement uncertainties is highlighted. The article is focussed on optical surfaces, but the ideas are more pervasive. Different communities refer to ‘figure, mid-spatial frequencies, and finish’ and ‘form, waviness, and roughness’, but the mathematics are identical. The second section ‘Light scattering methods’ is focussed on light scattering techniques; an important topic with in-line metrology becoming essential in many manufacturing scenarios. The potential of scattering methods has long been recognized; in the ‘smooth surface limit’ functionally significant relationships can be derived from first principles for statistically stationary, random surfaces. For rougher surfaces, correlations can be found experimentally for specific manufacturing processes. Improvements in computational methods encourage us to revisit light scattering as a powerful and versatile tool to investigate surface and thin film topographies, potentially providing information on both topography and defects over large areas at high speed. Future scattering techniques will be applied for complex film systems and for sub-surface damage measurement, but more research is required to quantify and standardise such measurements. A fundamental limitation of all topography measurement systems is their finite spatial bandwidth, which limits the slopes that they can detect. The third section ‘Optical measurements of surfaces containing high slope angles’ discusses this limitation and potential methods to overcome it. In some cases, a rough surface can allow measurement of slopes outside the classical optics limit, but more research is needed to fully understand this process. The last section ‘What are the challenges for high dynamic range surface measurement?’ presents the challenge facing metrologists by the use of surfaces that need measurement systems with very high spatial and temporal bandwidths, for example, those found in roll-to-roll manufacturing. High resolution, large areas and fast measurement times are needed, and these needs are unlikely to be fulfilled by developing a single all-purpose instrument. A toolbox of techniques needs to be developed which can be applied for any specific manufacturing scenario. The functional significance of surface topography has been known for centuries. Mirrors are smooth. Sliding behaviour depends on roughness. We have been measuring surfaces for centuries, but we still face many challenges. New manufacturing paradigms suggest that we need to make rapid measurements online that relate to the functional performance of the surface. This first ‘open questions’ collection addresses a subset of the challenges facing the surface metrology community. There are many more challenges which we would like to address in future ‘open questions’ articles. We welcome your feedback and your suggestions.

230Th-U dating of surficial deposits using the ion microprobe (SHRIMP-RG): A microstratigraphic perspective

USGS Publications Warehouse

Maher, K.; Wooden, J.L.; Paces, J.B.; Miller, D.M.

2007-01-01

We used the sensitive high-resolution ion microprobe reverse-geometry (SHRIMP-RG) to date pedogenic opal using the 230Th-U system. Due to the high-spatial resolution of an ion microprobe (typically 30 ??m), regions of pure opal within a sample can be targeted and detrital material can be avoided. In addition, because the technique is non-destructive, the sample can be preserved for other types of analyses including electron microprobe or other stable isotope or trace element ion microprobe measurements. The technique is limited to material with U concentrations greater than ???50 ppm. However, the high spatial resolution, small sample requirements, and the ability to avoid detrital material make this technique a suitable technique for dating many Pleistocene deposits formed in semi-arid environments. To determine the versatility of the method, samples from several different deposits were analyzed, including silica-rich pebble coatings from pedogenic carbonate horizons, a siliceous sinter deposit, and opaline silica deposited as a spring mound. U concentrations for 30-??m-diameter spots ranged from 50 to 1000 ppm in these types of materials. The 230Th/232Th activity ratios also ranged from ???100 to 106, eliminating the need for detrital Th corrections that reduce the precision of traditional U-Th ages for many milligram- and larger-sized samples. In pedogenic material, layers of high-U opal (ca. 500 ppm) are commonly juxtaposed next to layers of calcite with much lower U concentrations (1-2 ppm). If these types of samples are not analyzed using a technique with the appropriate spatial resolution, the ages may be strongly biased towards the age of the opal. Comparison with standard TIMS (Thermal Ionization Mass Spectrometry) measurements from separate microdrilled samples suggests that although the analytical precision of the ion microprobe (SHRIMP-RG) measurements is less than TIMS, the high spatial resolution results in better accuracy in the age determination for finely layered or complex deposits. The ion microprobe approach also may be useful for pre-screening samples to determine the age and degree of post-depositional alteration, analyzing finely layered samples or samples with complex growth histories, and obtaining simultaneous measurements of trace elements.

Reporting of quantitative oxygen mapping in EPR imaging

NASA Astrophysics Data System (ADS)

Subramanian, Sankaran; Devasahayam, Nallathamby; McMillan, Alan; Matsumoto, Shingo; Munasinghe, Jeeva P.; Saito, Keita; Mitchell, James B.; Chandramouli, Gadisetti V. R.; Krishna, Murali C.

2012-01-01

Oxygen maps derived from electron paramagnetic resonance spectral-spatial imaging (EPRI) are based upon the relaxivity of molecular oxygen with paramagnetic spin probes. This technique can be combined with MRI to facilitate mapping of pO 2 values in specific anatomic locations with high precision. The co-registration procedure, which matches the physical and digital dimensions of EPR and MR images, may present the pO 2 map at the higher MRI resolution, exaggerating the spatial resolution of oxygen, making it difficult to precisely distinguish hypoxic regions from normoxic regions. The latter distinction is critical in monitoring the treatment of cancer by radiation and chemotherapy, since it is well-established that hypoxic regions are three or four times more resistant to treatment compared to normoxic regions. The aim of this article is to describe pO 2 maps based on the intrinsic resolution of EPRI. A spectral parameter that affects the intrinsic spatial resolution of EPRI is the full width at half maximum (FWHM) height of the gradient-free EPR absorption line in frequency-encoded imaging. In single point imaging too, the transverse relaxation times (T2∗) limit the resolution since the signal decays by exp(-tp/T2∗) where the delay time after excitation pulse, t p, is related to the resolution. Although the spin densities of two point objects may be resolved at this separation, it is inadequate to evaluate quantitative changes of pO 2 levels since the linewidths are proportionately affected by pO 2. A spatial separation of at least twice this resolution is necessary to correctly identify a change in pO 2 level. In addition, the pO 2 values are blurred by uncertainties arising from spectral dimensions. Blurring due to noise and low resolution modulates the pO 2 levels at the boundaries of hypoxic and normoxic regions resulting in higher apparent pO 2 levels in hypoxic regions. Therefore, specification of intrinsic resolution and pO 2 uncertainties are necessary to interpret digitally processed pO 2 illustrations.

Analysis of factors which limited the spatial variation of barley yield on the forest-steppe chernozems of Kursk region

NASA Astrophysics Data System (ADS)

Belik, Anton; Vasenev, Ivan; Jablonskikh, Lidia; Bozhko, Svetlana

2017-04-01

The crop yield is the most important indicator of the efficiency of agricultural production. It is the function that depends on a large number of groups of independent variables, such as the weather, soil fertility and overall culture agriculture. A huge number of combinations of these factors contribute to the formation of high spatial variety of crop yields within small areas, includes the slope agrolandscapes in Kursk region. Spatial variety of yield leads to a significant reduction in the efficiency of agriculture. In this connection, evaluation and analysis of the factors, which limits the yield of field crops is a very urgent proble in agroecology. The research was conducted in the period of 2003-2004 on a representative field. The typical and leached chernozems with the varying thickness and of erosion degree are dominated in soil cover. At the time of field research studied areas were busy by barley. The reseached soils have an average and increased fertility level. Chernozem typical full-face, and the leached contain an average of 4.5-6% humus, close to neutral pH, favorable values of physico-chemical parameters, medium and high content of nutrients. The eroded chernozems differs agrogenic marked declining in fertility parameters. The diversity of meso- and micro-relief in the fields and soil cover influence to significant spatial variety of fertility. For example the content of nutrients in the soil variation can be up to 5-fold level. High spatial heterogeneity of soils fertility ifluence to barley yield variety. During research on the productivity of the field varied in the range of 20-43 c/ha, and 7-44 c/ha (2004). Analysis of the factors, which limited the yield of barley, showed that the first priorities occupy unregulated characterises: slope angle and the classification of soils (subtype and race of chernozem and the difference in the degree of erosion), which determines the development of erosion processes and redistribution available to plants form of moisture. As a rule, the maximum yield of barley is marked on most flat areas covered with chernozem leached and typical with the full profile. The contain of nutrients usually takes 3-4 levels of limitation. The significance of a particular element is determined by the characteristics of the particular agro-ecological homogeneous area. Most, however, the value in the 2003 - 2004's. plants were available forms of phosphorus and potassium Thus, in terms of slope agricultural landscapes of the Kursk region, there is increased spatial varety of fertility and barley yields. This priority among the limiting factors are soils and agro-ecological conditions. Significant influence of agrochemical parameters are shown within the homogeneous agroecological regions. In this regard system of precision agriculture has a great prospects for acquiring practical, and must to imply the adaptation of existing agricultural technologies to change the conditions of cultivation of field crops within fields.

Kriging with Unknown Variance Components for Regional Ionospheric Reconstruction.

PubMed

Huang, Ling; Zhang, Hongping; Xu, Peiliang; Geng, Jianghui; Wang, Cheng; Liu, Jingnan

2017-02-27

Ionospheric delay effect is a critical issue that limits the accuracy of precise Global Navigation Satellite System (GNSS) positioning and navigation for single-frequency users, especially in mid- and low-latitude regions where variations in the ionosphere are larger. Kriging spatial interpolation techniques have been recently introduced to model the spatial correlation and variability of ionosphere, which intrinsically assume that the ionosphere field is stochastically stationary but does not take the random observational errors into account. In this paper, by treating the spatial statistical information on ionosphere as prior knowledge and based on Total Electron Content (TEC) semivariogram analysis, we use Kriging techniques to spatially interpolate TEC values. By assuming that the stochastic models of both the ionospheric signals and measurement errors are only known up to some unknown factors, we propose a new Kriging spatial interpolation method with unknown variance components for both the signals of ionosphere and TEC measurements. Variance component estimation has been integrated with Kriging to reconstruct regional ionospheric delays. The method has been applied to data from the Crustal Movement Observation Network of China (CMONOC) and compared with the ordinary Kriging and polynomial interpolations with spherical cap harmonic functions, polynomial functions and low-degree spherical harmonic functions. The statistics of results indicate that the daily ionospheric variations during the experimental period characterized by the proposed approach have good agreement with the other methods, ranging from 10 to 80 TEC Unit (TECU, 1 TECU = 1 × 10 16 electrons/m²) with an overall mean of 28.2 TECU. The proposed method can produce more appropriate estimations whose general TEC level is as smooth as the ordinary Kriging but with a smaller standard deviation around 3 TECU than others. The residual results show that the interpolation precision of the new proposed method is better than the ordinary Kriging and polynomial interpolation by about 1.2 TECU and 0.7 TECU, respectively. The root mean squared error of the proposed new Kriging with variance components is within 1.5 TECU and is smaller than those from other methods under comparison by about 1 TECU. When compared with ionospheric grid points, the mean squared error of the proposed method is within 6 TECU and smaller than Kriging, indicating that the proposed method can produce more accurate ionospheric delays and better estimation accuracy over China regional area.

Kriging with Unknown Variance Components for Regional Ionospheric Reconstruction

PubMed Central

Huang, Ling; Zhang, Hongping; Xu, Peiliang; Geng, Jianghui; Wang, Cheng; Liu, Jingnan

2017-01-01

Ionospheric delay effect is a critical issue that limits the accuracy of precise Global Navigation Satellite System (GNSS) positioning and navigation for single-frequency users, especially in mid- and low-latitude regions where variations in the ionosphere are larger. Kriging spatial interpolation techniques have been recently introduced to model the spatial correlation and variability of ionosphere, which intrinsically assume that the ionosphere field is stochastically stationary but does not take the random observational errors into account. In this paper, by treating the spatial statistical information on ionosphere as prior knowledge and based on Total Electron Content (TEC) semivariogram analysis, we use Kriging techniques to spatially interpolate TEC values. By assuming that the stochastic models of both the ionospheric signals and measurement errors are only known up to some unknown factors, we propose a new Kriging spatial interpolation method with unknown variance components for both the signals of ionosphere and TEC measurements. Variance component estimation has been integrated with Kriging to reconstruct regional ionospheric delays. The method has been applied to data from the Crustal Movement Observation Network of China (CMONOC) and compared with the ordinary Kriging and polynomial interpolations with spherical cap harmonic functions, polynomial functions and low-degree spherical harmonic functions. The statistics of results indicate that the daily ionospheric variations during the experimental period characterized by the proposed approach have good agreement with the other methods, ranging from 10 to 80 TEC Unit (TECU, 1 TECU = 1 × 1016 electrons/m2) with an overall mean of 28.2 TECU. The proposed method can produce more appropriate estimations whose general TEC level is as smooth as the ordinary Kriging but with a smaller standard deviation around 3 TECU than others. The residual results show that the interpolation precision of the new proposed method is better than the ordinary Kriging and polynomial interpolation by about 1.2 TECU and 0.7 TECU, respectively. The root mean squared error of the proposed new Kriging with variance components is within 1.5 TECU and is smaller than those from other methods under comparison by about 1 TECU. When compared with ionospheric grid points, the mean squared error of the proposed method is within 6 TECU and smaller than Kriging, indicating that the proposed method can produce more accurate ionospheric delays and better estimation accuracy over China regional area. PMID:28264424

CHAMP (Camera, Handlens, and Microscope Probe)

NASA Technical Reports Server (NTRS)

Mungas, Greg S.; Boynton, John E.; Balzer, Mark A.; Beegle, Luther; Sobel, Harold R.; Fisher, Ted; Klein, Dan; Deans, Matthew; Lee, Pascal; Sepulveda, Cesar A.

2005-01-01

CHAMP (Camera, Handlens And Microscope Probe)is a novel field microscope capable of color imaging with continuously variable spatial resolution from infinity imaging down to diffraction-limited microscopy (3 micron/pixel). As a robotic arm-mounted imager, CHAMP supports stereo imaging with variable baselines, can continuously image targets at an increasing magnification during an arm approach, can provide precision rangefinding estimates to targets, and can accommodate microscopic imaging of rough surfaces through a image filtering process called z-stacking. CHAMP was originally developed through the Mars Instrument Development Program (MIDP) in support of robotic field investigations, but may also find application in new areas such as robotic in-orbit servicing and maintenance operations associated with spacecraft and human operations. We overview CHAMP'S instrument performance and basic design considerations below.

Nanoscopic Electrofocusing for Bio-Nanoelectronic Devices

NASA Astrophysics Data System (ADS)

Lakshmanan, Shanmugamurthy

2015-01-01

The ability to arrange precisely designed patterns of nanoparticles into a desired spatial configuration is the key to creating novel nanoscale devices that take advantage of the unique properties of nanomaterials. While two-dimensional arrays of nanoparticles have been demonstrated successfully by various techniques, a controlled way of building ordered arrays of three-dimensional (3D) nanoparticle structures remains challenging. This book describes a new technique called the 'nanoscopic lens' which is able to produce a variety of 3D nano-structures in a controlled manner. This ebook describes the nanoscopic lens technique and how it can serve as the foundation for device development that is not limited to a variety of optical, magnetic and electronic devices, but can also create a wide range of bio-nanoelectronic devices.

Bioprinting scale-up tissue and organ constructs for transplantation.

PubMed

Ozbolat, Ibrahim T

2015-07-01

Bioprinting is an emerging field that is having a revolutionary impact on the medical sciences. It offers great precision for the spatial placement of cells, proteins, genes, drugs, and biologically active particles to better guide tissue generation and formation. This emerging biotechnology appears to be promising for advancing tissue engineering toward functional tissue and organ fabrication for transplantation, drug testing, research investigations, and cancer or disease modeling, and has recently attracted growing interest worldwide among researchers and the general public. In this Opinion, I highlight possibilities for the bioprinting scale-up of functional tissue and organ constructs for transplantation and provide the reader with alternative approaches, their limitations, and promising directions for new research prospects. Copyright © 2015 Elsevier Ltd. All rights reserved.

Disentangling the effects of spatial inconsistency of targets and distractors when searching in realistic scenes.

PubMed

Spotorno, Sara; Malcolm, George L; Tatler, Benjamin W

2015-02-10

Previous research has suggested that correctly placed objects facilitate eye guidance, but also that objects violating spatial associations within scenes may be prioritized for selection and subsequent inspection. We analyzed the respective eye guidance of spatial expectations and target template (precise picture or verbal label) in visual search, while taking into account any impact of object spatial inconsistency on extrafoveal or foveal processing. Moreover, we isolated search disruption due to misleading spatial expectations about the target from the influence of spatial inconsistency within the scene upon search behavior. Reliable spatial expectations and precise target template improved oculomotor efficiency across all search phases. Spatial inconsistency resulted in preferential saccadic selection when guidance by template was insufficient to ensure effective search from the outset and the misplaced object was bigger than the objects consistently placed in the same scene region. This prioritization emerged principally during early inspection of the region, but the inconsistent object also tended to be preferentially fixated overall across region viewing. These results suggest that objects are first selected covertly on the basis of their relative size and that subsequent overt selection is made considering object-context associations processed in extrafoveal vision. Once the object was fixated, inconsistency resulted in longer first fixation duration and longer total dwell time. As a whole, our findings indicate that observed impairment of oculomotor behavior when searching for an implausibly placed target is the combined product of disruption due to unreliable spatial expectations and prioritization of inconsistent objects before and during object fixation. © 2015 ARVO.

Combined fabrication technique for high-precision aspheric optical windows

NASA Astrophysics Data System (ADS)

Hu, Hao; Song, Ci; Xie, Xuhui

2016-07-01

Specifications made on optical components are becoming more and more stringent with the performance improvement of modern optical systems. These strict requirements not only involve low spatial frequency surface accuracy, mid-and-high spatial frequency surface errors, but also surface smoothness and so on. This presentation mainly focuses on the fabrication process for square aspheric window which combines accurate grinding, magnetorheological finishing (MRF) and smoothing polishing (SP). In order to remove the low spatial frequency surface errors and subsurface defects after accurate grinding, the deterministic polishing method MRF with high convergence and stable material removal rate is applied. Then the SP technology with pseudo-random path is adopted to eliminate the mid-and-high spatial frequency surface ripples and high slope errors which is the defect for MRF. Additionally, the coordinate measurement method and interferometry are combined in different phase. Acid-etched method and ion beam figuring (IBF) are also investigated on observing and reducing the subsurface defects. Actual fabrication result indicates that the combined fabrication technique can lead to high machining efficiency on manufaturing the high-precision and high-quality optical aspheric windows.

High-resolution digital dosimetric system for spatial characterization of radiation fields using a thermoluminescent CaF/sub 2/:Dy crystal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atari, N.A.; Svensson, G.K.

1986-05-01

A high-resolution digital dosimetric system has been developed for the spatial characterization of radiation fields. The system comprises the following: 0.5-mm-thick, 25-mm-diam CaF/sub 2/:Dy thermoluminescent crystal; intensified charge coupled device video camera; video cassette recorder; and a computerized image processing subsystem. The optically flat single crystal is used as a radiation imaging device and the subsequent thermally stimulated phosphorescence is viewed by the intensified camera for further processing and analysis. Parameters governing the performance characteristics of the system were measured. A spatial resolution limit of 31 +- 2 ..mu..m (1sigma) corresponding to 16 +- 1 line pair/mm measured at themore » 4% level of the modulation transfer function has been achieved. The full width at half maximum of the line spread function measured independently by the slit method or derived from the edge response function was found to be 69 +- 4 ..mu..m (1sigma). The high resolving power, speed of readout, good precision, wide dynamic range, and the large image storage capacity make the system suitable for the digital mapping of the relative distribution of absorbed doses for various small radiation fields and the edges of larger fields.« less

High-resolution digital dosimetric system for spatial characterization of radiation fields using a thermoluminescent CaF2:Dy crystal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atari, N.A.; Svensson, G.K.

1986-05-01

A high-resolution digital dosimetric system has been developed for the spatial characterization of radiation fields. The system comprises the following: 0.5-mm-thick, 25-mm-diam CaF2:Dy thermoluminescent crystal; intensified charge coupled device video camera; video cassette recorder; and a computerized image processing subsystem. The optically flat single crystal is used as a radiation imaging device and the subsequent thermally stimulated phosphorescence is viewed by the intensified camera for further processing and analysis. Parameters governing the performance characteristics of the system were measured. A spatial resolution limit of 31 +/- 2 microns (1 sigma) corresponding to 16 +/- 1 line pairs/mm measured at themore » 4% level of the modulation transfer function has been achieved. The full width at half maximum of the line spread function measured independently by the slit method or derived from the edge response function was found to be 69 +/- 4 microns (1 sigma). The high resolving power, speed of readout, good precision, wide dynamic range, and the large image storage capacity make the system suitable for the digital mapping of the relative distribution of absorbed doses for various small radiation fields and the edges of larger fields.« less

An improved triangulation laser rangefinder using a custom CMOS HDR linear image sensor

NASA Astrophysics Data System (ADS)

Liscombe, Michael

3-D triangulation laser rangefinders are used in many modern applications, from terrain mapping to biometric identification. Although a wide variety of designs have been proposed, laser speckle noise still provides a fundamental limitation on range accuracy. These works propose a new triangulation laser rangefinder designed specifically to mitigate the effects of laser speckle noise. The proposed rangefinder uses a precision linear translator to laterally reposition the imaging system (e.g., image sensor and imaging lens). For a given spatial location of the laser spot, capturing N spatially uncorrelated laser spot profiles is shown to improve range accuracy by a factor of N . This technique has many advantages over past speckle-reduction technologies, such as a fixed system cost and form factor, and the ability to virtually eliminate laser speckle noise. These advantages are made possible through spatial diversity and come at the cost of increased acquisition time. The rangefinder makes use of the ICFYKWG1 linear image sensor, a custom CMOS sensor developed at the Vision Sensor Laboratory (York University). Tests are performed on the image sensor's innovative high dynamic range technology to determine its effects on range accuracy. As expected, experimental results have shown that the sensor provides a trade-off between dynamic range and range accuracy.

Mapping Urban Environmental Noise Using Smartphones.

PubMed

Zuo, Jinbo; Xia, Hao; Liu, Shuo; Qiao, Yanyou

2016-10-13

Noise mapping is an effective method of visualizing and accessing noise pollution. In this paper, a noise-mapping method based on smartphones to effectively and easily measure environmental noise is proposed. By using this method, a noise map of an entire area can be created using limited measurement data. To achieve the measurement with certain precision, a set of methods was designed to calibrate the smartphones. Measuring noise with mobile phones is different from the traditional static observations. The users may be moving at any time. Therefore, a method of attaching an additional microphone with a windscreen is proposed to reduce the wind effect. However, covering an entire area is impossible. Therefore, an interpolation method is needed to achieve full coverage of the area. To reduce the influence of spatial heterogeneity and improve the precision of noise mapping, a region-based noise-mapping method is proposed in this paper, which is based on the distribution of noise in different region types tagged by volunteers, to interpolate and combine them to create a noise map. To validate the effect of the method, a comparison of the interpolation results was made to analyse our method and the ordinary Kriging method. The result shows that our method is more accurate in reflecting the local distribution of noise and has better interpolation precision. We believe that the proposed noise-mapping method is a feasible and low-cost noise-mapping solution.

Enabling Characteristics Of Optical Autocovariance Lidar For Global Wind And Aerosol Profiling

NASA Astrophysics Data System (ADS)

Grund, C. J.; Stephens, M.; Lieber, M.; Weimer, C.

2008-12-01

Systematic global wind measurements with 70 km horizontal resolution and, depending on altitude from the PBL to stratosphere, 250m-2km vertical resolution and 0.5m/s - 2 m/s velocity precision are recognized as key to the understanding and monitoring of complex climate modulations, validation of models, and improved precision and range for weather forecasts. Optical Autocovariance Wind Lidar (OAWL) is a relatively new interferometric direct detection Doppler lidar approach that promises to meet the required wind profile resolution at substantial mass, cost, and power savings, and at reduced technical risk for a space-based system meeting the most demanding velocity precision and spatial and temporal resolution requirements. A proof of concept Optical Autocovariance Wind Lidar (OAWL) has been demonstrated, and a robust multi- wavelength, field-widened (more than 100 microR) lidar system suitable for high altitude (over 16km) aircraft demonstration is under construction. Other advantages of the OAWL technique include insensitivity to aerosol/molecular backscatter mixing ratio, freedom from complex receiver/transmitter optical frequency lock loops, prospects for practical continuous large-area coverage wind profiling from GEO, and the availability of simultaneous multiple wavelength High Spectral Resolution Lidar (OA-HSRL) for aerosol identification and optical property measurements. We will discuss theory, development and demonstration status, advantages, limitations, and space-based performance of OAWL and OA-HSRL, as well as the potential for combined mission synergies.

Formation Control for the Maxim Mission.

NASA Technical Reports Server (NTRS)

Luquette, Richard J.; Leitner, Jesse; Gendreau, Keith; Sanner, Robert M.

2004-01-01

Over the next twenty years, a wave of change is occurring in the spacebased scientific remote sensing community. While the fundamental limits in the spatial and angular resolution achievable in spacecraft have been reached, based on today's technology, an expansive new technology base has appeared over the past decade in the area of Distributed Space Systems (DSS). A key subset of the DSS technology area is that which covers precision formation flying of space vehicles. Through precision formation flying, the baselines, previously defined by the largest monolithic structure which could fit in the largest launch vehicle fairing, are now virtually unlimited. Several missions including the Micro-Arcsecond X-ray Imaging Mission (MAXIM), and the Stellar Imager will drive the formation flying challenges to achieve unprecedented baselines for high resolution, extended-scene, interferometry in the ultraviolet and X-ray regimes. This paper focuses on establishing the feasibility for the formation control of the MAXIM mission. The Stellar Imager mission requirements are on the same order of those for MAXIM. This paper specifically addresses: (1) high-level science requirements for these missions and how they evolve into engineering requirements; (2) the formation control architecture devised for such missions; (3) the design of the formation control laws to maintain very high precision relative positions; and (4) the levels of fuel usage required in the duration of these missions. Specific preliminary results are presented for two spacecraft within the MAXIM mission.

Mapping Urban Environmental Noise Using Smartphones

PubMed Central

Zuo, Jinbo; Xia, Hao; Liu, Shuo; Qiao, Yanyou

2016-01-01

Noise mapping is an effective method of visualizing and accessing noise pollution. In this paper, a noise-mapping method based on smartphones to effectively and easily measure environmental noise is proposed. By using this method, a noise map of an entire area can be created using limited measurement data. To achieve the measurement with certain precision, a set of methods was designed to calibrate the smartphones. Measuring noise with mobile phones is different from the traditional static observations. The users may be moving at any time. Therefore, a method of attaching an additional microphone with a windscreen is proposed to reduce the wind effect. However, covering an entire area is impossible. Therefore, an interpolation method is needed to achieve full coverage of the area. To reduce the influence of spatial heterogeneity and improve the precision of noise mapping, a region-based noise-mapping method is proposed in this paper, which is based on the distribution of noise in different region types tagged by volunteers, to interpolate and combine them to create a noise map. To validate the effect of the method, a comparison of the interpolation results was made to analyse our method and the ordinary Kriging method. The result shows that our method is more accurate in reflecting the local distribution of noise and has better interpolation precision. We believe that the proposed noise-mapping method is a feasible and low-cost noise-mapping solution. PMID:27754359

Inducing fluorescence of uranyl acetate as a dual-purpose contrast agent for correlative light-electron microscopy with nanometre precision.

PubMed

Tuijtel, Maarten W; Mulder, Aat A; Posthuma, Clara C; van der Hoeven, Barbara; Koster, Abraham J; Bárcena, Montserrat; Faas, Frank G A; Sharp, Thomas H

2017-09-05

Correlative light-electron microscopy (CLEM) combines the high spatial resolution of transmission electron microscopy (TEM) with the capability of fluorescence light microscopy (FLM) to locate rare or transient cellular events within a large field of view. CLEM is therefore a powerful technique to study cellular processes. Aligning images derived from both imaging modalities is a prerequisite to correlate the two microscopy data sets, and poor alignment can limit interpretability of the data. Here, we describe how uranyl acetate, a commonly-used contrast agent for TEM, can be induced to fluoresce brightly at cryogenic temperatures (-195 °C) and imaged by cryoFLM using standard filter sets. This dual-purpose contrast agent can be used as a general tool for CLEM, whereby the equivalent staining allows direct correlation between fluorescence and TEM images. We demonstrate the potential of this approach by performing multi-colour CLEM of cells containing equine arteritis virus proteins tagged with either green- or red-fluorescent protein, and achieve high-precision localization of virus-induced intracellular membrane modifications. Using uranyl acetate as a dual-purpose contrast agent, we achieve an image alignment precision of ~30 nm, twice as accurate as when using fiducial beads, which will be essential for combining TEM with the evolving field of super-resolution light microscopy.

Optogenetics through windows on the brain in the nonhuman primate

PubMed Central

Ruiz, Octavio; Lustig, Brian R.; Nassi, Jonathan J.; Cetin, Ali; Reynolds, John H.; Albright, Thomas D.; Callaway, Edward M.; Stoner, Gene R.

2013-01-01

Optogenetics combines optics and genetics to control neuronal activity with cell-type specificity and millisecond temporal precision. Its use in model organisms such as rodents, Drosophila, and Caenorhabditis elegans is now well-established. However, application of this technology in nonhuman primates (NHPs) has been slow to develop. One key challenge has been the delivery of viruses and light to the brain through the thick dura mater of NHPs, which can only be penetrated with large-diameter devices that damage the brain. The opacity of the NHP dura prevents visualization of the underlying cortex, limiting the spatial precision of virus injections, electrophysiological recordings, and photostimulation. Here, we describe a new optogenetics approach in which the native dura is replaced with an optically transparent artificial dura. This artificial dura can be penetrated with fine glass micropipettes, enabling precisely targeted injections of virus into brain tissue with minimal damage to cortex. The expression of optogenetic agents can be monitored visually over time. Most critically, this optical window permits targeted, noninvasive photostimulation and concomitant measurements of neuronal activity via intrinsic signal imaging and electrophysiological recordings. We present results from both anesthetized-paralyzed (optical imaging) and awake-behaving NHPs (electrophysiology). The improvements over current methods made possible by the artificial dura should enable the widespread use of optogenetic tools in NHP research, a key step toward the development of therapies for neuropsychiatric and neurological diseases in humans. PMID:23761700

High Resolution UAV-based Passive Microwave L-band Imaging of Soil Moisture

NASA Astrophysics Data System (ADS)

Gasiewski, A. J.; Stachura, M.; Elston, J.; McIntyre, E. M.

2013-12-01

Due to long electrical wavelengths and aperture size limitations the scaling of passive microwave remote sensing of soil moisture from spaceborne low-resolution applications to high resolution applications suitable for precision agriculture requires use of low flying aerial vehicles. This presentation summarizes a project to develop a commercial Unmanned Aerial Vehicle (UAV) hosting a precision microwave radiometer for mapping of soil moisture in high-value shallow root-zone crops. The project is based on the use of the Tempest electric-powered UAV and a compact digital L-band (1400-1427 MHz) passive microwave radiometer developed specifically for extremely small and lightweight aerial platforms or man-portable, tractor, or tower-based applications. Notable in this combination are a highly integrated UAV/radiometer antenna design and use of both the upwelling emitted signal from the surface and downwelling cold space signal for precise calibration using a lobe-correlating radiometer architecture. The system achieves a spatial resolution comparable to the altitude of the UAV above the ground while referencing upwelling measurements to the constant and well-known background temperature of cold space. The radiometer incorporates digital sampling and radio frequency interference mitigation along with infrared, near-infrared, and visible (red) sensors for surface temperature and vegetation biomass correction. This NASA-sponsored project is being developed both for commercial application in cropland water management, L-band satellite validation, and estuarian plume studies.

Statistical precision of the intensities retrieved from constrained fitting of overlapping peaks in high-resolution mass spectra

DOE PAGES

Cubison, M. J.; Jimenez, J. L.

2015-06-05

Least-squares fitting of overlapping peaks is often needed to separately quantify ions in high-resolution mass spectrometer data. A statistical simulation approach is used to assess the statistical precision of the retrieved peak intensities. The sensitivity of the fitted peak intensities to statistical noise due to ion counting is probed for synthetic data systems consisting of two overlapping ion peaks whose positions are pre-defined and fixed in the fitting procedure. The fitted intensities are sensitive to imperfections in the m/Q calibration. These propagate as a limiting precision in the fitted intensities that may greatly exceed the precision arising from counting statistics.more » The precision on the fitted peak intensity falls into one of three regimes. In the "counting-limited regime" (regime I), above a peak separation χ ~ 2 to 3 half-widths at half-maximum (HWHM), the intensity precision is similar to that due to counting error for an isolated ion. For smaller χ and higher ion counts (~ 1000 and higher), the intensity precision rapidly degrades as the peak separation is reduced ("calibration-limited regime", regime II). Alternatively for χ < 1.6 but lower ion counts (e.g. 10–100) the intensity precision is dominated by the additional ion count noise from the overlapping ion and is not affected by the imprecision in the m/Q calibration ("overlapping-limited regime", regime III). The transition between the counting and m/Q calibration-limited regimes is shown to be weakly dependent on resolving power and data spacing and can thus be approximated by a simple parameterisation based only on peak intensity ratios and separation. A simple equation can be used to find potentially problematic ion pairs when evaluating results from fitted spectra containing many ions. Longer integration times can improve the precision in regimes I and III, but a given ion pair can only be moved out of regime II through increased spectrometer resolving power. As a result, studies presenting data obtained from least-squares fitting procedures applied to mass spectral peaks should explicitly consider these limits on statistical precision.« less

Effects of Topography-driven Micro-climatology on Evaporation

NASA Astrophysics Data System (ADS)

Adams, D. D.; Boll, J.; Wagenbrenner, N. S.

2017-12-01

The effects of spatial-temporal variation of climatic conditions on evaporation in micro-climates are not well defined. Current spatially-based remote sensing and modeling for evaporation is limited for high resolutions and complex topographies. We investigated the effect of topography-driven micro-climatology on evaporation supported by field measurements and modeling. Fourteen anemometers and thermometers were installed in intersecting transects over the complex topography of the Cook Agronomy Farm, Pullman, WA. WindNinja was used to create 2-D vector maps based on recorded observations for wind. Spatial analysis of vector maps using ArcGIS was performed for analysis of wind patterns and variation. Based on field measurements, wind speed and direction show consequential variability based on hill-slope location in this complex topography. Wind speed and wind direction varied up to threefold and more than 45 degrees, respectively for a given time interval. The use of existing wind models enables prediction of wind variability over the landscape and subsequently topography-driven evaporation patterns relative to wind. The magnitude of the spatial-temporal variability of wind therefore resulted in variable evaporation rates over the landscape. These variations may contribute to uneven crop development patterns observed during the late growth stages of the agricultural crops at the study location. Use of hill-slope location indexes and appropriate methods for estimating actual evaporation support development of methodologies to better define topography-driven heterogeneity in evaporation. The cumulative effects of spatially-variable climatic factors on evaporation are important to quantify the localized water balance and inform precision farming practices.

Spatial and Temporal Stress Drop Variations of the 2011 Tohoku Earthquake Sequence

NASA Astrophysics Data System (ADS)

Miyake, H.

2013-12-01

The 2011 Tohoku earthquake sequence consists of foreshocks, mainshock, aftershocks, and repeating earthquakes. To quantify spatial and temporal stress drop variations is important for understanding M9-class megathrust earthquakes. Variability and spatial and temporal pattern of stress drop is a basic information for rupture dynamics as well as useful to source modeling. As pointed in the ground motion prediction equations by Campbell and Bozorgnia [2008, Earthquake Spectra], mainshock-aftershock pairs often provide significant decrease of stress drop. We here focus strong motion records before and after the Tohoku earthquake, and analyze source spectral ratios considering azimuth- and distance dependency [Miyake et al., 2001, GRL]. Due to the limitation of station locations on land, spatial and temporal stress drop variations are estimated by adjusting shifts from the omega-squared source spectral model. The adjustment is based on the stochastic Green's function simulations of source spectra considering azimuth- and distance dependency. We assumed the same Green's functions for event pairs for each station, both the propagation path and site amplification effects are cancelled out. Precise studies of spatial and temporal stress drop variations have been performed [e.g., Allmann and Shearer, 2007, JGR], this study targets the relations between stress drop vs. progression of slow slip prior to the Tohoku earthquake by Kato et al. [2012, Science] and plate structures. Acknowledgement: This study is partly supported by ERI Joint Research (2013-B-05). We used the JMA unified earthquake catalogue and K-NET, KiK-net, and F-net data provided by NIED.

Research on characteristics of forward scattering light based on Monte Carlo simulation

NASA Astrophysics Data System (ADS)

Ding, Kun; Jin, Wei-qi

2008-03-01

In ocean inspection, laser system has the advantages of high precision, high efficiency and being enacted on the temperature or salinity of seawater. It has been developed greatly in recent years. But it is not yet a mature inspection technique because of the complicacy of oceanic channel and water-scattering. There are many problems to be resolved. In this paper, the work principle and of general developing situation of ocean lidar techniques are introduced first. The author points out that the intense scattering and absorbing acting on light by water is the bottleneck to limit the development of ocean lidar. The Monet Carlo method is adopted finally to be a basal way of study in this paper after discussing several method of studying the light transmitting in seawater. Based on the theory of photon transmitted in the seawater and the particularity of underwater target detecting, we have studied the characters of laser scattering on underwater target surface and spatial and temporal characters of forward scattering. Starting from the particularity of underwater target detecting, a new model to describe the characters of laser scattering is presented. Based on this model, we developed the fast arithmetic, which enhanced the computation speed greatly and the precision was also assured. It made detecting real-time realizable. Basing on the Monte Carlo simulation and starting from the theory of photon transmitted in the seawater, we studied how the parameters of water quality and other systemic parameters affect the light forward scattering through seawater at spatial and temporal region and provided the theoretical sustentation of enhancing the SNR and operational distance.

Exact Integrations of Polynomials and Symmetric Quadrature Formulas over Arbitrary Polyhedral Grids

NASA Technical Reports Server (NTRS)

Liu, Yen; Vinokur, Marcel

1997-01-01

This paper is concerned with two important elements in the high-order accurate spatial discretization of finite volume equations over arbitrary grids. One element is the integration of basis functions over arbitrary domains, which is used in expressing various spatial integrals in terms of discrete unknowns. The other consists of quadrature approximations to those integrals. Only polynomial basis functions applied to polyhedral and polygonal grids are treated here. Non-triangular polygonal faces are subdivided into a union of planar triangular facets, and the resulting triangulated polyhedron is subdivided into a union of tetrahedra. The straight line segment, triangle, and tetrahedron are thus the fundamental shapes that are the building blocks for all integrations and quadrature approximations. Integrals of products up to the fifth order are derived in a unified manner for the three fundamental shapes in terms of the position vectors of vertices. Results are given both in terms of tensor products and products of Cartesian coordinates. The exact polynomial integrals are used to obtain symmetric quadrature approximations of any degree of precision up to five for arbitrary integrals over the three fundamental domains. Using a coordinate-free formulation, simple and rational procedures are developed to derive virtually all quadrature formulas, including some previously unpublished. Four symmetry groups of quadrature points are introduced to derive Gauss formulas, while their limiting forms are used to derive Lobatto formulas. Representative Gauss and Lobatto formulas are tabulated. The relative efficiency of their application to polyhedral and polygonal grids is detailed. The extension to higher degrees of precision is discussed.

Calibration Assessment of Uncooled Thermal Cameras for Deployment on UAV platforms

NASA Astrophysics Data System (ADS)

Aragon, B.; Parkes, S. D.; Lucieer, A.; Turner, D.; McCabe, M.

2017-12-01

In recent years an array of miniaturized sensors have been developed and deployed on Unmanned Aerial Vehicles (UAVs). Prior to gaining useful data from these integrations, it is vitally important to quantify sensor accuracy, precision and cross-sensitivity of retrieved measurements on environmental variables. Small uncooled thermal frame cameras provide a novel solution to monitoring surface temperatures from UAVs with very high spatial resolution, with retrievals being used to investigate heat stress or evapotranspiration. For these studies, accuracies of a few degrees are generally required. Although radiometrically calibrated thermal cameras have recently become commercially available, confirmation of the accuracy of these sensors is required. Here we detail a system for investigating the accuracy and precision, start up stabilisation time, dependence of retrieved temperatures on ambient temperatures and image vignetting. The calibration system uses a relatively inexpensive blackbody source deployed with the sensor inside an environmental chamber to maintain and control the ambient temperature. Calibration of a number of different thermal sensors commonly used for UAV deployment was investigated. Vignetting was shown to be a major limitation on sensor accuracy, requiring characterization through measuring a spatially uniform temperature target such as the blackbody. Our results also showed that a stabilization period is required after powering on the sensors and before conducting an aerial survey. Through use of the environmental chamber it was shown the ambient temperature influenced the temperatures retrieved by the different sensors. This study illustrates the importance of determining the calibration and cross-sensitivities of thermal sensors to obtain accurate thermal maps that can be used to study crop ecosystems.

Validating spatiotemporal predictions of an important pest of small grains.

PubMed

Merrill, Scott C; Holtzer, Thomas O; Peairs, Frank B; Lester, Philip J

2015-01-01

Arthropod pests are typically managed using tactics applied uniformly to the whole field. Precision pest management applies tactics under the assumption that within-field pest pressure differences exist. This approach allows for more precise and judicious use of scouting resources and management tactics. For example, a portion of a field delineated as attractive to pests may be selected to receive extra monitoring attention. Likely because of the high variability in pest dynamics, little attention has been given to developing precision pest prediction models. Here, multimodel synthesis was used to develop a spatiotemporal model predicting the density of a key pest of wheat, the Russian wheat aphid, Diuraphis noxia (Kurdjumov). Spatially implicit and spatially explicit models were synthesized to generate spatiotemporal pest pressure predictions. Cross-validation and field validation were used to confirm model efficacy. A strong within-field signal depicting aphid density was confirmed with low prediction errors. Results show that the within-field model predictions will provide higher-quality information than would be provided by traditional field scouting. With improvements to the broad-scale model component, the model synthesis approach and resulting tool could improve pest management strategy and provide a template for the development of spatially explicit pest pressure models. © 2014 Society of Chemical Industry.

Dendrochemical patterns of calcium, zinc, and potassium related to internal factors detected by energy dispersive X-ray fluorescence (EDXRF)

Treesearch

Kevin T. Smith; Jean Christophe Balouet; Walter C. Shortle; Michel Chalot; François Beaujard; Hakan Grudd; Don A. Vroblesky; Joel G. Burken

2014-01-01

Energy dispersive X-ray fluorescence (EDXRF) provides highly sensitive and precise spatial resolution of cation content in individual annual growth rings in trees. The sensitivity and precision have prompted successful applications to forensic dendrochemistry and the timing of environmental releases of contaminants. These applications have highlighted the need to...

Phase Holograms In PMMA

NASA Technical Reports Server (NTRS)

Maker, Paul D.; Muller, Richard E.

1994-01-01

Complex, computer-generated phase holograms written in thin films of poly(methyl methacrylate) (PMMA) by process of electron-beam exposure followed by chemical development. Spatial variations of phase delay in holograms quasi-continuous, as distinquished from stepwise as in binary phase holograms made by integrated-circuit fabrication. Holograms more precise than binary holograms. Greater continuity and precision results in decreased scattering loss and increased imaging efficiency.

Precision medicine for cancer with next-generation functional diagnostics.

PubMed

Friedman, Adam A; Letai, Anthony; Fisher, David E; Flaherty, Keith T

2015-12-01

Precision medicine is about matching the right drugs to the right patients. Although this approach is technology agnostic, in cancer there is a tendency to make precision medicine synonymous with genomics. However, genome-based cancer therapeutic matching is limited by incomplete biological understanding of the relationship between phenotype and cancer genotype. This limitation can be addressed by functional testing of live patient tumour cells exposed to potential therapies. Recently, several 'next-generation' functional diagnostic technologies have been reported, including novel methods for tumour manipulation, molecularly precise assays of tumour responses and device-based in situ approaches; these address the limitations of the older generation of chemosensitivity tests. The promise of these new technologies suggests a future diagnostic strategy that integrates functional testing with next-generation sequencing and immunoprofiling to precisely match combination therapies to individual cancer patients.

Intravital phosphorescence lifetime imaging of the renal cortex accurately measures renal hypoxia.

PubMed

Hirakawa, Yosuke; Mizukami, Kiichi; Yoshihara, Toshitada; Takahashi, Ippei; Khulan, Purevsuren; Honda, Tomoko; Mimura, Imari; Tanaka, Tetsuhiro; Tobita, Seiji; Nangaku, Masaomi

2018-06-01

Renal tubulointerstitial hypoxia is recognized as a final common pathway of chronic kidney disease and is considered a promising drug target. However, hypoxia in the tubules is not well examined because of limited detection methods. Here, we devised a method to visualize renal tubular oxygen tension with spatial resolution at a cellular level using the cell-penetrating phosphorescent probe, BTPDM1 (an iridium-based cationic lipophilic dye), and confocal phosphorescence lifetime imaging microscopy to precisely assess renal hypoxia. Imaging with BTPDM1 revealed an oxygen gradient between S1 and S2 segments in mouse kidney. We also demonstrated that our microscopy system can detect subtle changes of hypoxemia and reoxygenation, and the acquired phosphorescence lifetime can be converted to partial pressure of oxygen. This new method allows, for the first time, visualization of intravital oxygen gradients at the renal surface with high spatial resolution. Thus, the confocal phosphorescence lifetime imaging microscopy platform, combined with BTPDM1, will promote an accurate understanding of tissue hypoxia, including renal hypoxia. Copyright © 2018 International Society of Nephrology. Published by Elsevier Inc. All rights reserved.

Transient Chaotic Mixing

NASA Astrophysics Data System (ADS)

Gollub, J. P.; Rothstein, David; Losert, Wolfgang

1998-11-01

We report a systematic experimental study of transient mixing in a family of two-dimensional vortex flows driven by magneto-hydrodynamic forces. The forcing method allows a number of distinct cases to be investigated spanning the range from Lagrangian chaos to 2D turbulence. Both spatially ordered and spatially irregular forcing situations are considered. The basic methodology is to label half of the fluid layer with a fluorescent dye, and to measure the subsequent dye distribution with a precision CCD camera. Diagnostics are devised that allow us separately to monitor the stretching of fluid elements and development of fine striations, diffusive smearing, and the transport of material across the cell. Various statistical measures are used, including the probability distribution, the scalar gradient PDF, and the power spectrum. We find major differences between the time-periodic and nonperiodic cases. The former generally show evidence of "KAM surfaces" or barriers to transport, so that mixing, while substantial, is incomplete. After a modest number of cycles (typically 10-20), the flow structure usually reaches a slowly evolving limiting form whose amplitude then decays, as has been proposed in several theoretical studies.

Aberration control in 4Pi nanoscopy: definitions, properties, and applications (Conference Presentation)

NASA Astrophysics Data System (ADS)

Hao, Xiang; Allgeyer, Edward S.; Velasco, Mary Grace M.; Booth, Martin J.; Bewersdorf, Joerg

2016-03-01

The development of fluorescence microscopy, which allows live-cell imaging with high labeling specificity, has made the visualization of cellular architecture routine. However, for centuries, the spatial resolution of optical microscopy was fundamentally limited by diffraction. The past two decades have seen a revolution in far-field optical nanoscopy (or "super-resolution" microscopy). The best 3D resolution is achieved by optical nanoscopes like the isoSTED or the iPALM/4Pi-SMS, which utilize two opposing objective lenses in a coherent manner. These system are, however, also more complex and the required interference conditions demand precise aberration control. Our research involves developing novel adaptive optics techniques that enable high spatial and temporal resolution imaging for biological applications. In this talk, we will discuss how adaptive optics can enhance dual-objective lens nanoscopes. We will demonstrate how adaptive optics devices provide unprecedented freedom to manipulate the light field in isoSTED nanoscopy, allow to realize automatic beam alignment, suppress the inherent side-lobes of the point-spread function, and dynamically compensate for sample-induced aberrations. We will present both the theoretical groundwork and the experimental confirmations.

Specification of Dendritogenesis Site in Drosophila aCC Motoneuron by Membrane Enrichment of Pak1 through Dscam1.

PubMed

Kamiyama, Daichi; McGorty, Ryan; Kamiyama, Rie; Kim, Michael D; Chiba, Akira; Huang, Bo

2015-10-12

Precise positioning of dendritic branches is a critical step in the establishment of neuronal circuitry. However, there is limited knowledge on how environmental cues translate into dendrite initiation or branching at a specific position. Here, through a combination of mutation, RNAi, and imaging experiments, we found that a Dscam-Dock-Pak1 hierarchical interaction defines the stereotypical dendrite growth site in the Drosophila aCC motoneuron. This interaction localizes the Cdc42 effector Pak1 to the plasma membrane at the dendrite initiation site before the activation of Cdc42. Ectopic expression of membrane-anchored Pak1 overrides this spatial specification of dendritogenesis, confirming its function in guiding Cdc42 signaling. We further discovered that Dscam1 localization in aCC occurs through an inter-neuronal contact that involves Dscam1 in the partner MP1 neuron. These findings elucidate a mechanism by which Dscam1 controls neuronal morphogenesis through spatial regulation of Cdc42 signaling and, subsequently, cytoskeletal remodeling. Copyright © 2015 Elsevier Inc. All rights reserved.

Numerically correcting the joint misplacement of the sub-holograms in spatial synthetic aperture digital Fresnel holography.

PubMed

Jiang, Hongzhen; Zhao, Jianlin; Di, Jianglei; Qin, Chuan

2009-10-12

We propose an effective reconstruction method for correcting the joint misplacement of the sub-holograms caused by the displacement error of CCD in spatial synthetic aperture digital Fresnel holography. For every two adjacent sub-holograms along the motion path of CCD, we reconstruct the corresponding holographic images under different joint distances between the sub-holograms and then find out the accurate joint distance by evaluating the quality of the corresponding synthetic reconstructed images. Then the accurate relative position relationships of the sub-holograms can be confirmed according to all of the identified joint distances, with which the accurate synthetic reconstructed image can be obtained by superposing the reconstruction results of the sub-holograms. The numerical reconstruction results are in agreement with the theoretical analysis. Compared with the traditional reconstruction method, this method could be used to not only correct the joint misplacement of the sub-holograms without the limitation of the actually overlapping circumstances of the adjacent sub-holograms, but also make the joint precision of the sub-holograms reach sub-pixel accuracy.

Independent Manipulation of Heat and Electrical Current via Bifunctional Metamaterials

NASA Astrophysics Data System (ADS)

Moccia, Massimo; Castaldi, Giuseppe; Savo, Salvatore; Sato, Yuki; Galdi, Vincenzo

2014-04-01

Spatial tailoring of the material constitutive properties is a well-known strategy to mold the local flow of given observables in different physical domains. Coordinate-transformation-based methods (e.g., transformation optics) offer a powerful and systematic approach to design anisotropic, spatially inhomogeneous artificial materials (metamaterials) capable of precisely manipulating wave-based (electromagnetic, acoustic, elastic) as well as diffusion-based (heat) phenomena in a desired fashion. However, as versatile as these approaches have been, most designs have thus far been limited to serving single-target functionalities in a given physical domain. Here, we present a step towards a "transformation multiphysics" framework that allows independent and simultaneous manipulation of multiple physical phenomena. As a proof of principle of this new scheme, we design and synthesize (in terms of realistic material constituents) a metamaterial shell that simultaneously behaves as a thermal concentrator and an electrical "invisibility cloak." Our numerical results open up intriguing possibilities in the largely unexplored phase space of multifunctional metadevices, with a wide variety of potential applications to electrical, magnetic, acoustic, and thermal scenarios.

A solution of the monoenergetic neutral particle transport equation for adjacent half-spaces with anisotropic scattering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ganapol, B.D., E-mail: ganapol@cowboy.ame.arizona.edu; Mostacci, D.; Previti, A.

2016-07-01

We present highly accurate solutions to the neutral particle transport equation in a half-space. While our initial motivation was in response to a recently published solution based on Chandrasekhar's H-function, the presentation to follow has taken on a more comprehensive tone. The solution by H-functions certainly did achieved high accuracy but was limited to isotropic scattering and emission from spatially uniform and linear sources. Moreover, the overly complicated nature of the H-function approach strongly suggests that its extension to anisotropic scattering and general sources is not at all practical. For this reason, an all encompassing theory for the determination ofmore » highly precise benchmarks, including anisotropic scattering for a variety of spatial source distributions, is presented for particle transport in a half-space. We illustrate the approach via a collection of cases including tables of 7-place flux benchmarks to guide transport methods developers. The solution presented can be applied to a considerable number of one and two half-space transport problems with variable sources and represents a state-of-the-art benchmark solution.« less

Imagerie des étoiles évoluées par interférométrie. Réarrangement de pupille

NASA Astrophysics Data System (ADS)

Lacour, Sylvestre

2010-03-01

Atmospheric turbulence is an important limit to high angular resolution in astronomy. Interferometry resolved this issue by filtering the incoming light with single-mode fibers. Thanks to this technique, we obtained with the IOTA interferometer very precise measurements of the spatial frequencies of seven evolved stars. From these measurements, we performed a blind deconvolution to restore an image of the surface of the stars. Six of the them, Betelgeuse, Mu Cep, R leo, Mira, Chi Cyg and CH Cyg, feature very asymmetrical brightness distributions. On the other hand, the Arcturus data are extremely well fitted with a simple limb-darkened photospheric disc. From the observations of chi Cyg, we show that the star is surrounded by a molecular shell undergoing a ballistic motion. We propose to use the same technique of spatial filtering with single-mode fibers to correct for the effect of turbulence in the pupil of a telescope. Because the pupil is redundant, this technique does require a remapping of the pupil. We developed a dedicated algorithm to show that it was possible to reconstruct images at the diffraction limit of the telescope free of any speckle noise. Our simulations show that a high dynamic range (over 10^6) could be obtained in the visible on an 8 meter telescope. A lab experiment is under construction to validate the concept of this new instrument.

Test of CCD Precision Limits for Differential Photometry

NASA Technical Reports Server (NTRS)

Borucki, W. J.; Dunham, E. W.; Wei, M. Z.; Robinson, L. B.; Ford, C. H.; Granados, A. F.

1995-01-01

Results of tests to demonstrate the very high differential-photometric stability of CCD light sensors are presented. The measurements reported here demonstrate that in a controlled laboratory environment, a front-illuminated CCD can provide differential-photometric measurements with reproducible precision approaching one part in 105. Practical limitations to the precision of differential-photometric measurements with CCDs and implications for spaceborne applications are discussed.

qCSF in Clinical Application: Efficient Characterization and Classification of Contrast Sensitivity Functions in Amblyopia

PubMed Central

Hou, Fang; Huang, Chang-Bing; Lesmes, Luis; Feng, Li-Xia; Tao, Liming; Zhou, Yi-Feng; Lu, Zhong-Lin

2010-01-01

Purpose. The qCSF method is a novel procedure for rapid measurement of spatial contrast sensitivity functions (CSFs). It combines Bayesian adaptive inference with a trial-to-trial information gain strategy, to directly estimate four parameters defining the observer's CSF. In the present study, the suitability of the qCSF method for clinical application was examined. Methods. The qCSF method was applied to rapidly assess spatial CSFs in 10 normal and 8 amblyopic participants. The qCSF was evaluated for accuracy, precision, test–retest reliability, suitability of CSF model assumptions, and accuracy of amblyopia screening. Results. qCSF estimates obtained with as few as 50 trials matched those obtained with 300 Ψ trials. The precision of qCSF estimates obtained with 120 and 130 trials, in normal subjects and amblyopes, matched the precision of 300 Ψ trials. For both groups and both methods, test–retest sensitivity estimates were well matched (all R > 0.94). The qCSF model assumptions were valid for 8 of 10 normal participants and all amblyopic participants. Measures of the area under log CSF (AULCSF) and the cutoff spatial frequency (cutSF) were lower in the amblyopia group; these differences were captured within 50 qCSF trials. Amblyopia was detected at an approximately 80% correct rate in 50 trials, when a logistic regression model was used with AULCSF and cutSF as predictors. Conclusions. The qCSF method is sufficiently rapid, accurate, and precise in measuring CSFs in normal and amblyopic persons. It has great potential for clinical practice. PMID:20484592

The Earth System Science Pathfinder Orbiting Carbon Observatory (OCO) Mission

NASA Technical Reports Server (NTRS)

Crisp, David

2003-01-01

A viewgraph presentation describing the Earth System Science Pathfinder Orbiting Carbon Observatory (OCO) Mission is shown. The contents include: 1) Why CO2?; 2) What Processes Control CO2 Sinks?; 3) OCO Science Team; 4) Space-Based Measurements of CO2; 5) Driving Requirement: Precise, Bias-Free Global Measurements; 6) Making Precise CO2 Measurements from Space; 7) OCO Spatial Sampling Strategy; 8) OCO Observing Modes; 9) Implementation Approach; 10) The OCO Instrument; 11) The OCO Spacecraft; 12) OCO Will Fly in the A-Train; 13) Validation Program Ensures Accuracy and Minimizes Spatially Coherent Biases; 14) Can OCO Provide the Required Precision?; 15) O2 Column Retrievals with Ground-based FTS; 16) X(sub CO2) Retrieval Simulations; 17) Impact of Albedo and Aerosol Uncertainty on X(sub CO2) Retrievals; 18) Carbon Cycle Modeling Studies: Seasonal Cycle; 19) Carbon Cycle Modeling Studies: The North-South Gradient in CO2; 20) Carbon Cycle Modeling Studies: Effect of Diurnal Biases; 21) Project Status and Schedule; and 22) Summary.

Precise method of compensating radiation-induced errors in a hot-cathode-ionization gauge with correcting electrode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saeki, Hiroshi, E-mail: saeki@spring8.or.jp; Magome, Tamotsu, E-mail: saeki@spring8.or.jp

2014-10-06

To compensate pressure-measurement errors caused by a synchrotron radiation environment, a precise method using a hot-cathode-ionization-gauge head with correcting electrode, was developed and tested in a simulation experiment with excess electrons in the SPring-8 storage ring. This precise method to improve the measurement accuracy, can correctly reduce the pressure-measurement errors caused by electrons originating from the external environment, and originating from the primary gauge filament influenced by spatial conditions of the installed vacuum-gauge head. As the result of the simulation experiment to confirm the performance reducing the errors caused by the external environment, the pressure-measurement error using this method wasmore » approximately less than several percent in the pressure range from 10{sup −5} Pa to 10{sup −8} Pa. After the experiment, to confirm the performance reducing the error caused by spatial conditions, an additional experiment was carried out using a sleeve and showed that the improved function was available.« less

The Temporal Dynamics of Arc Expression Regulate Cognitive Flexibility.

PubMed

Wall, Mark J; Collins, Dawn R; Chery, Samantha L; Allen, Zachary D; Pastuzyn, Elissa D; George, Arlene J; Nikolova, Viktoriya D; Moy, Sheryl S; Philpot, Benjamin D; Shepherd, Jason D; Müller, Jürgen; Ehlers, Michael D; Mabb, Angela M; Corrêa, Sonia A L

2018-06-27

Neuronal activity regulates the transcription and translation of the immediate-early gene Arc/Arg3.1, a key mediator of synaptic plasticity. Proteasome-dependent degradation of Arc tightly limits its temporal expression, yet the significance of this regulation remains unknown. We disrupted the temporal control of Arc degradation by creating an Arc knockin mouse (ArcKR) where the predominant Arc ubiquitination sites were mutated. ArcKR mice had intact spatial learning but showed specific deficits in selecting an optimal strategy during reversal learning. This cognitive inflexibility was coupled to changes in Arc mRNA and protein expression resulting in a reduced threshold to induce mGluR-LTD and enhanced mGluR-LTD amplitude. These findings show that the abnormal persistence of Arc protein limits the dynamic range of Arc signaling pathways specifically during reversal learning. Our work illuminates how the precise temporal control of activity-dependent molecules, such as Arc, regulates synaptic plasticity and is crucial for cognition. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Challenges and solutions for studying collective animal behaviour in the wild.

PubMed

Hughey, Lacey F; Hein, Andrew M; Strandburg-Peshkin, Ariana; Jensen, Frants H

2018-05-19

Mobile animal groups provide some of the most compelling examples of self-organization in the natural world. While field observations of songbird flocks wheeling in the sky or anchovy schools fleeing from predators have inspired considerable interest in the mechanics of collective motion, the challenge of simultaneously monitoring multiple animals in the field has historically limited our capacity to study collective behaviour of wild animal groups with precision. However, recent technological advancements now present exciting opportunities to overcome many of these limitations. Here we review existing methods used to collect data on the movements and interactions of multiple animals in a natural setting. We then survey emerging technologies that are poised to revolutionize the study of collective animal behaviour by extending the spatial and temporal scales of inquiry, increasing data volume and quality, and expediting the post-processing of raw data.This article is part of the theme issue 'Collective movement ecology'. © 2018 The Author(s).

Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis and maintenance of axial patterning.

PubMed

Lin, Alexander Y T; Pearson, Bret J

2014-03-01

During adult homeostasis and regeneration, the freshwater planarian must accomplish a constant balance between cell proliferation and cell death, while also maintaining proper tissue and organ size and patterning. How these ordered processes are precisely modulated remains relatively unknown. Here we show that planarians use the downstream effector of the Hippo signaling cascade, yorkie (yki; YAP in vertebrates) to control a diverse set of pleiotropic processes in organ homeostasis, stem cell regulation, regeneration and axial patterning. We show that yki functions to maintain the homeostasis of the planarian excretory (protonephridial) system and to limit stem cell proliferation, but does not affect the differentiation process or cell death. Finally, we show that Yki acts synergistically with WNT/β-catenin signaling to repress head determination by limiting the expression domains of posterior WNT genes and that of the WNT-inhibitor notum. Together, our data show that yki is a key gene in planarians that integrates stem cell proliferation control, organ homeostasis, and the spatial patterning of tissues.

Two-photon holographic optogenetics of neural circuits (Conference Presentation)

NASA Astrophysics Data System (ADS)

Yang, Weijian; Carrillo-Reid, Luis; Peterka, Darcy S.; Yuste, Rafael

2016-03-01

Optical manipulation of in vivo neural circuits with cellular resolution could be important for understanding cortical function. Despite recent progress, simultaneous optogenetic activation with cellular precision has either been limited to 2D planes, or a very small numbers of neurons over a limited volume. Here we demonstrate a novel paradigm for simultaneous 3D activation using a low repetition rate pulse-amplified fiber laser system and a spatial light modulator (SLM) to project 3D holographic excitation patterns on the cortex of mice in vivo for targeted volumetric 3D photoactivation. This method is compatible with two-photon imaging, and enables the simultaneous activation of multiple cells in 3D, using red-shifted opsins, such as C1V1 or ReaChR, while simultaneously imaging GFP-based sensors such as GCaMP6. This all-optical imaging and 3D manipulation approach achieves simultaneous reading and writing of cortical activity, and should be a powerful tool for the study of neuronal circuits.

Fusion of UAV photogrammetry and digital optical granulometry for detection of structural changes in floodplains

NASA Astrophysics Data System (ADS)

Langhammer, Jakub; Lendzioch, Theodora; Mirijovsky, Jakub

2016-04-01

Granulometric analysis represents a traditional, important and for the description of sedimentary material substantial method with various applications in sedimentology, hydrology and geomorphology. However, the conventional granulometric field survey methods are time consuming, laborious, costly and are invasive to the surface being sampled, which can be limiting factor for their applicability in protected areas.. The optical granulometry has recently emerged as an image analysis technique, enabling non-invasive survey, employing semi-automated identification of clasts from calibrated digital imagery, taken on site by conventional high resolution digital camera and calibrated frame. The image processing allows detection and measurement of mixed size natural grains, their sorting and quantitative analysis using standard granulometric approaches. Despite known limitations, the technique today presents reliable tool, significantly easing and speeding the field survey in fluvial geomorphology. However, the nature of such survey has still limitations in spatial coverage of the sites and applicability in research at multitemporal scale. In our study, we are presenting novel approach, based on fusion of two image analysis techniques - optical granulometry and UAV-based photogrammetry, allowing to bridge the gap between the needs of high resolution structural information for granulometric analysis and spatially accurate and data coverage. We have developed and tested a workflow that, using UAV imaging platform enabling to deliver seamless, high resolution and spatially accurate imagery of the study site from which can be derived the granulometric properties of the sedimentary material. We have set up a workflow modeling chain, providing (i) the optimum flight parameters for UAV imagery to balance the two key divergent requirements - imagery resolution and seamless spatial coverage, (ii) the workflow for the processing of UAV acquired imagery by means of the optical granulometry and (iii) the workflow for analysis of spatial distribution and temporal changes of granulometric properties across the point bar. The proposed technique was tested on a case study of an active point bar of mid-latitude mountain stream at Sumava mountains, Czech Republic, exposed to repeated flooding. The UAV photogrammetry was used to acquire very high resolution imagery to build high-precision digital terrain models and orthoimage. The orthoimage was then analyzed using the digital optical granulometric tool BaseGrain. This approach allowed us (i) to analyze the spatial distribution of the grain size in a seamless transects over an active point bar and (ii) to assess the multitemporal changes of granulometric properties of the point bar material resulting from flooding. The tested framework prove the applicability of the proposed method for granulometric analysis with accuracy comparable with field optical granulometry. The seamless nature of the data enables to study spatial distribution of granulometric properties across the study sites as well as the analysis of multitemporal changes, resulting from repeated imaging.

Optimal arrangements of fiber optic probes to enhance the spatial resolution in depth for 3D reflectance diffuse optical tomography with time-resolved measurements performed with fast-gated single-photon avalanche diodes

NASA Astrophysics Data System (ADS)

Puszka, Agathe; Di Sieno, Laura; Dalla Mora, Alberto; Pifferi, Antonio; Contini, Davide; Boso, Gianluca; Tosi, Alberto; Hervé, Lionel; Planat-Chrétien, Anne; Koenig, Anne; Dinten, Jean-Marc

2014-02-01

Fiber optic probes with a width limited to a few centimeters can enable diffuse optical tomography (DOT) in intern organs like the prostate or facilitate the measurements on extern organs like the breast or the brain. We have recently shown on 2D tomographic images that time-resolved measurements with a large dynamic range obtained with fast-gated single-photon avalanche diodes (SPADs) could push forward the imaged depth range in a diffusive medium at short source-detector separation compared with conventional non-gated approaches. In this work, we confirm these performances with the first 3D tomographic images reconstructed with such a setup and processed with the Mellin- Laplace transform. More precisely, we investigate the performance of hand-held probes with short interfiber distances in terms of spatial resolution and specifically demonstrate the interest of having a compact probe design featuring small source-detector separations. We compare the spatial resolution obtained with two probes having the same design but different scale factors, the first one featuring only interfiber distances of 15 mm and the second one, 10 mm. We evaluate experimentally the spatial resolution obtained with each probe on the setup with fast-gated SPADs for optical phantoms featuring two absorbing inclusions positioned at different depths and conclude on the potential of short source-detector separations for DOT.

Optical resonance imaging: An optical analog to MRI with sub-diffraction-limited capabilities.

PubMed

Allodi, Marco A; Dahlberg, Peter D; Mazuski, Richard J; Davis, Hunter C; Otto, John P; Engel, Gregory S

2016-12-21

We propose here optical resonance imaging (ORI), a direct optical analog to magnetic resonance imaging (MRI). The proposed pulse sequence for ORI maps space to time and recovers an image from a heterodyne-detected third-order nonlinear photon echo measurement. As opposed to traditional photon echo measurements, the third pulse in the ORI pulse sequence has significant pulse-front tilt that acts as a temporal gradient. This gradient couples space to time by stimulating the emission of a photon echo signal from different lateral spatial locations of a sample at different times, providing a widefield ultrafast microscopy. We circumvent the diffraction limit of the optics by mapping the lateral spatial coordinate of the sample with the emission time of the signal, which can be measured to high precision using interferometric heterodyne detection. This technique is thus an optical analog of MRI, where magnetic-field gradients are used to localize the spin-echo emission to a point below the diffraction limit of the radio-frequency wave used. We calculate the expected ORI signal using 15 fs pulses and 87° of pulse-front tilt, collected using f /2 optics and find a two-point resolution 275 nm using 800 nm light that satisfies the Rayleigh criterion. We also derive a general equation for resolution in optical resonance imaging that indicates that there is a possibility of superresolution imaging using this technique. The photon echo sequence also enables spectroscopic determination of the input and output energy. The technique thus correlates the input energy with the final position and energy of the exciton.

A Critical Test of Temporal and Spatial Accuracy of the Tobii T60XL Eye Tracker

ERIC Educational Resources Information Center

Morgante, James D.; Zolfaghari, Rahman; Johnson, Scott P.

2012-01-01

Infant eye tracking is becoming increasingly popular for its presumed precision relative to traditional looking time paradigms and potential to yield new insights into developmental processes. However, there is strong reason to suspect that the temporal and spatial resolution of popular eye tracking systems is not entirely accurate, potentially…

Integrating geospatial data and cropping system simulation within a geographic information system to analyze spatial seed cotton yield, water use, and irrigation requirements

USDA-ARS?s Scientific Manuscript database

The development of sensors that provide geospatial information on crop and soil conditions has been a primary success for precision agriculture. However, further developments are needed to integrate geospatial data into computer algorithms that spatially optimize crop production while considering po...

2D Fast Vessel Visualization Using a Vessel Wall Mask Guiding Fine Vessel Detection

PubMed Central

Raptis, Sotirios; Koutsouris, Dimitris

2010-01-01

The paper addresses the fine retinal-vessel's detection issue that is faced in diagnostic applications and aims at assisting in better recognizing fine vessel anomalies in 2D. Our innovation relies in separating key visual features vessels exhibit in order to make the diagnosis of eventual retinopathologies easier to detect. This allows focusing on vessel segments which present fine changes detectable at different sampling scales. We advocate that these changes can be addressed as subsequent stages of the same vessel detection procedure. We first carry out an initial estimate of the basic vessel-wall's network, define the main wall-body, and then try to approach the ridges and branches of the vasculature's using fine detection. Fine vessel screening looks into local structural inconsistencies in vessels properties, into noise, or into not expected intensity variations observed inside pre-known vessel-body areas. The vessels are first modelled sufficiently but not precisely by their walls with a tubular model-structure that is the result of an initial segmentation. This provides a chart of likely Vessel Wall Pixels (VWPs) yielding a form of a likelihood vessel map mainly based on gradient filter's intensity and spatial arrangement parameters (e.g., linear consistency). Specific vessel parameters (centerline, width, location, fall-away rate, main orientation) are post-computed by convolving the image with a set of pre-tuned spatial filters called Matched Filters (MFs). These are easily computed as Gaussian-like 2D forms that use a limited range sub-optimal parameters adjusted to the dominant vessel characteristics obtained by Spatial Grey Level Difference statistics limiting the range of search into vessel widths of 16, 32, and 64 pixels. Sparse pixels are effectively eliminated by applying a limited range Hough Transform (HT) or region growing. Major benefits are limiting the range of parameters, reducing the search-space for post-convolution to only masked regions, representing almost 2% of the 2D volume, good speed versus accuracy/time trade-off. Results show the potentials of our approach in terms of time for detection ROC analysis and accuracy of vessel pixel (VP) detection. PMID:20706682

A Modeling Framework for Inference of Surface Emissions Using Mobile Observations

NASA Astrophysics Data System (ADS)

Fasoli, B.; Mitchell, L.; Crosman, E.; Mendoza, D. L.; Lin, J. C.

2016-12-01

Our ability to quantify surface emissions depends on the precision of observations and the spatial density of measurement networks. Mobile measurement techniques offer a cost effective strategy for quantifying atmospheric conditions over space without requiring a dense network of in-situ sites. However, interpretation of these data and inversion of dispersed measurements to estimate surface emissions can be difficult. We introduce a framework using the Stochastic Time-Inverted Lagrangian Transport (STILT) model that assimilates both spatially resolved observations and an emissions inventory to better estimate surface fluxes. Salt Lake City is a unique laboratory for the study of urban carbon emissions. It is the only U.S. city that utilizes light-rail trains to continuously measure high frequency carbon dioxide (CO2) and methane (CH4); it is home to one of the longest and most spatially resolved high precision CO2 measurement networks (air.utah.edu); and it is one of four cities in the world for which the Hestia anthropogenic emissions inventory has been produced which characterizes CO2 emissions at the scale of individual buildings and roadways. Using these data and modeling resources, we evaluate spatially resolved CO2 measurements and transported CO2 emissions on hourly timescales at a dense spatial resolution across Salt Lake City.

Spatial analysis of the distribution of Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) and losses in maize crop productivity using geostatistics.

PubMed

Farias, Paulo R S; Barbosa, José C; Busoli, Antonio C; Overal, William L; Miranda, Vicente S; Ribeiro, Susane M

2008-01-01

The fall armyworm, Spodoptera frugiperda (J.E. Smith), is one of the chief pests of maize in the Americas. The study of its spatial distribution is fundamental for designing correct control strategies, improving sampling methods, determining actual and potential crop losses, and adopting precise agricultural techniques. In São Paulo state, Brazil, a maize field was sampled at weekly intervals, from germination through harvest, for caterpillar densities, using quadrates. In each of 200 quadrates, 10 plants were sampled per week. Harvest weights were obtained in the field for each quadrate, and ear diameters and lengths were also sampled (15 ears per quadrate) and used to estimate potential productivity of the quadrate. Geostatistical analyses of caterpillar densities showed greatest ranges for small caterpillars when semivariograms were adjusted for a spherical model that showed greatest fit. As the caterpillars developed in the field, their spatial distribution became increasingly random, as shown by a model adjusted to a straight line, indicating a lack of spatial dependence among samples. Harvest weight and ear length followed the spherical model, indicating the existence of spatial variability of the production parameters in the maize field. Geostatistics shows promise for the application of precise methods in the integrated control of pests.

A spatial scan statistic for nonisotropic two-level risk cluster.

PubMed

Li, Xiao-Zhou; Wang, Jin-Feng; Yang, Wei-Zhong; Li, Zhong-Jie; Lai, Sheng-Jie

2012-01-30

Spatial scan statistic methods are commonly used for geographical disease surveillance and cluster detection. The standard spatial scan statistic does not model any variability in the underlying risks of subregions belonging to a detected cluster. For a multilevel risk cluster, the isotonic spatial scan statistic could model a centralized high-risk kernel in the cluster. Because variations in disease risks are anisotropic owing to different social, economical, or transport factors, the real high-risk kernel will not necessarily take the central place in a whole cluster area. We propose a spatial scan statistic for a nonisotropic two-level risk cluster, which could be used to detect a whole cluster and a noncentralized high-risk kernel within the cluster simultaneously. The performance of the three methods was evaluated through an intensive simulation study. Our proposed nonisotropic two-level method showed better power and geographical precision with two-level risk cluster scenarios, especially for a noncentralized high-risk kernel. Our proposed method is illustrated using the hand-foot-mouth disease data in Pingdu City, Shandong, China in May 2009, compared with two other methods. In this practical study, the nonisotropic two-level method is the only way to precisely detect a high-risk area in a detected whole cluster. Copyright © 2011 John Wiley & Sons, Ltd.

Landscape controls on the timing of spring, autumn, and growing season length in mid-Atlantic forests

USGS Publications Warehouse

Elmore, A.J.; Guinn, S.M.; Minsley, B.J.; Richardson, A.D.

2012-01-01

The timing of spring leaf development, trajectories of summer leaf area, and the timing of autumn senescence have profound impacts to the water, carbon, and energy balance of ecosystems, and are likely influenced by global climate change. Limited field-based and remote-sensing observations have suggested complex spatial patterns related to geographic features that influence climate. However, much of this variability occurs at spatial scales that inhibit a detailed understanding of even the dominant drivers. Recognizing these limitations, we used nonlinear inverse modeling of medium-resolution remote sensing data, organized by day of year, to explore the influence of climate-related landscape factors on the timing of spring and autumn leaf-area trajectories in mid-Atlantic, USA forests. We also examined the extent to which declining summer greenness (greendown) degrades the precision and accuracy of observations of autumn offset of greenness. Of the dominant drivers of landscape phenology, elevation was the strongest, explaining up to 70% of the spatial variation in the onset of greenness. Urban land cover was second in importance, influencing spring onset and autumn offset to a distance of 32 km from large cities. Distance to tidal water also influenced phenological timing, but only within ~5 km of shorelines. Additionally, we observed that (i) growing season length unexpectedly increases with increasing elevation at elevations below 275 m; (ii) along gradients in urban land cover, timing of autumn offset has a stronger effect on growing season length than does timing of spring onset; and (iii) summer greendown introduces bias and uncertainty into observations of the autumn offset of greenness. These results demonstrate the power of medium grain analyses of landscape-scale phenology for understanding environmental controls on growing season length, and predicting how these might be affected by climate change.

Absorption spectroscopy at the ultimate quantum limit from single-photon states

NASA Astrophysics Data System (ADS)

Whittaker, R.; Erven, C.; Neville, A.; Berry, M.; O'Brien, J. L.; Cable, H.; Matthews, J. C. F.

2017-02-01

Absorption spectroscopy is routinely used to characterise chemical and biological samples. For the state-of-the-art in laser absorption spectroscopy, precision is theoretically limited by shot-noise due to the fundamental Poisson-distribution of photon number in laser radiation. In practice, the shot-noise limit can only be achieved when all other sources of noise are eliminated. Here, we use wavelength-correlated and tuneable photon pairs to demonstrate how absorption spectroscopy can be performed with precision beyond the shot-noise limit and near the ultimate quantum limit by using the optimal probe for absorption measurement—single photons. We present a practically realisable scheme, which we characterise both the precision and accuracy of by measuring the response of a control feature. We demonstrate that the technique can successfully probe liquid samples and using two spectrally similar types of haemoglobin we show that obtaining a given precision in resolution requires fewer heralded single probe photons compared to using an idealised laser.

Test of CCD Precision Limits for Differential Photometry

NASA Technical Reports Server (NTRS)

Robinson, L. B.; Wei, M. Z.; Borucki, W. J.; Dunham, E. W.; Ford, C. H.; Granados, A. F.

1995-01-01

Results of tests to demonstrate the very high differential-photometric stability of CCD light sensors are presented. The measurements reported here demonstrate that in a controlled laboratory environment, a front-illuminated CCD can provide differential-photometric measurements with reproducible precision approaching one part in 10(exp 5). Practical limitations to the precision of differential-photometric measurements with CCDs and implications for spaceborne applications are discussed.

Geostatistical estimation of forest biomass in interior Alaska combining Landsat-derived tree cover, sampled airborne lidar and field observations

NASA Astrophysics Data System (ADS)

Babcock, Chad; Finley, Andrew O.; Andersen, Hans-Erik; Pattison, Robert; Cook, Bruce D.; Morton, Douglas C.; Alonzo, Michael; Nelson, Ross; Gregoire, Timothy; Ene, Liviu; Gobakken, Terje; Næsset, Erik

2018-06-01

The goal of this research was to develop and examine the performance of a geostatistical coregionalization modeling approach for combining field inventory measurements, strip samples of airborne lidar and Landsat-based remote sensing data products to predict aboveground biomass (AGB) in interior Alaska's Tanana Valley. The proposed modeling strategy facilitates pixel-level mapping of AGB density predictions across the entire spatial domain. Additionally, the coregionalization framework allows for statistically sound estimation of total AGB for arbitrary areal units within the study area---a key advance to support diverse management objectives in interior Alaska. This research focuses on appropriate characterization of prediction uncertainty in the form of posterior predictive coverage intervals and standard deviations. Using the framework detailed here, it is possible to quantify estimation uncertainty for any spatial extent, ranging from pixel-level predictions of AGB density to estimates of AGB stocks for the full domain. The lidar-informed coregionalization models consistently outperformed their counterpart lidar-free models in terms of point-level predictive performance and total AGB precision. Additionally, the inclusion of Landsat-derived forest cover as a covariate further improved estimation precision in regions with lower lidar sampling intensity. Our findings also demonstrate that model-based approaches that do not explicitly account for residual spatial dependence can grossly underestimate uncertainty, resulting in falsely precise estimates of AGB. On the other hand, in a geostatistical setting, residual spatial structure can be modeled within a Bayesian hierarchical framework to obtain statistically defensible assessments of uncertainty for AGB estimates.

Spatial Precision in Magnetic Resonance Imaging–Guided Radiation Therapy: The Role of Geometric Distortion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weygand, Joseph, E-mail: jw2899@columbia.edu; The University of Texas Graduate School of Biomedical Sciences at Houston, Houston, Texas; Fuller, Clifton David

2016-07-15

Because magnetic resonance imaging–guided radiation therapy (MRIgRT) offers exquisite soft tissue contrast and the ability to image tissues in arbitrary planes, the interest in this technology has increased dramatically in recent years. However, intrinsic geometric distortion stemming from both the system hardware and the magnetic properties of the patient affects MR images and compromises the spatial integrity of MRI-based radiation treatment planning, given that for real-time MRIgRT, precision within 2 mm is desired. In this article, we discuss the causes of geometric distortion, describe some well-known distortion correction algorithms, and review geometric distortion measurements from 12 studies, while taking into accountmore » relevant imaging parameters. Eleven of the studies reported phantom measurements quantifying system-dependent geometric distortion, while 2 studies reported simulation data quantifying magnetic susceptibility–induced geometric distortion. Of the 11 studies investigating system-dependent geometric distortion, 5 reported maximum measurements less than 2 mm. The simulation studies demonstrated that magnetic susceptibility–induced distortion is typically smaller than system-dependent distortion but still nonnegligible, with maximum distortion ranging from 2.1 to 2.6 mm at a field strength of 1.5 T. As expected, anatomic landmarks containing interfaces between air and soft tissue had the largest distortions. The evidence indicates that geometric distortion reduces the spatial integrity of MRI-based radiation treatment planning and likely diminishes the efficacy of MRIgRT. Better phantom measurement techniques and more effective distortion correction algorithms are needed to achieve the desired spatial precision.« less

GNSS Monitoring of Deformation within heavy civil infrastructure

NASA Astrophysics Data System (ADS)

Montillet, Jean-Philippe; Melbourne, Timothy; Szeliga, Walter; Schrock, Gavin

2015-04-01

The steady increase in precision simultaneous with the decreasing of continuous GPS monitoring has enabled the deployment of receivers for a host of new activities. Here we discuss the precision obtained from several multi-station installations operated over a five-year period on several heavy civil-engineered structures, including two earthen-fill dams and subsiding highway overpass damaged by seismic shaking. In the past 5 years, the Cascadia Hazards Institute (Pacific Northwest Geodetic Array) at Central Washington University together with the Washington department of public utilities (Land Survey) have been monitoring several structures around Seattle area including two dams (Howard Hansen and Tolt). One aim of this study is to test the use of continuous GNSS in order to detect any deformations due to rapid pool level rises or to monitor the safety of a structure when an Earthquake strikes it. In this study, data is processed using Real Time Kinematic GPS with short baseline (d < 500 m) and GPS daily position (PPP). However, multipath is the most limiting factor on accuracy for very precise positioning applications with GPS. It is very often present indoors and outdoors, especially in narrow valleys with a limited view of the sky. As a result, multipath can amount to an error of a few centimetres. Unfortunately, the accuracy requirements of precision deformation monitoring are generally at the sub centimetre level, which is presently a big challenge on an epoch-by-epoch basis with regular, carrier phase techniques. Thus, it needs to be properly mitigated. In this study, several stations are set up on the dams (4 stations on the Tolt reservoir and 10 stations on the Howard Hansen dam), and spatial filtering can then be used to mitigate multipath. In addition, several signal processing techniques are also investigated (i.e. Empirical mode decomposition, sidereal filtering, adaptive filtering). RTK GPS should allow to monitor rapid deformations, whereas GPS daily position is used to detect long-term deformations such as the pool level rises due to the melting of ice cap on surrounding mountains. Note that RTK measurements are processed with the MIT software TRACK and the GPS daily positions estimated with GAMIT-GLOBK.

Photoelectrocyclization as an activation mechanism for organelle-specific live-cell imaging probes.

PubMed

Tran, Mai N; Chenoweth, David M

2015-05-26

Photoactivatable fluorophores are useful tools in live-cell imaging owing to their potential for precise spatial and temporal control. In this report, a new photoactivatable organelle-specific live-cell imaging probe based on a 6π electrocyclization/oxidation mechanism is described. It is shown that this new probe is water-soluble, non-cytotoxic, cell-permeable, and useful for mitochondrial imaging. The probe displays large Stokes shifts in both pre-activated and activated forms, allowing simultaneous use with common dyes and fluorescent proteins. Sequential single-cell activation experiments in dense cellular environments demonstrate high spatial precision and utility in single- or multi-cell labeling experiments. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking

PubMed Central

von Diezmann, Alex; Shechtman, Yoav; Moerner, W. E.

2017-01-01

Single-molecule super-resolution fluorescence microscopy and single-particle tracking are two imaging modalities that illuminate the properties of cells and materials on spatial scales down to tens of nanometers, or with dynamical information about nanoscale particle motion in the millisecond range, respectively. These methods generally use wide-field microscopes and two-dimensional camera detectors to localize molecules to much higher precision than the diffraction limit. Given the limited total photons available from each single-molecule label, both modalities require careful mathematical analysis and image processing. Much more information can be obtained about the system under study by extending to three-dimensional (3D) single-molecule localization: without this capability, visualization of structures or motions extending in the axial direction can easily be missed or confused, compromising scientific understanding. A variety of methods for obtaining both 3D super-resolution images and 3D tracking information have been devised, each with their own strengths and weaknesses. These include imaging of multiple focal planes, point-spread-function engineering, and interferometric detection. These methods may be compared based on their ability to provide accurate and precise position information of single-molecule emitters with limited photons. To successfully apply and further develop these methods, it is essential to consider many practical concerns, including the effects of optical aberrations, field-dependence in the imaging system, fluorophore labeling density, and registration between different color channels. Selected examples of 3D super-resolution imaging and tracking are described for illustration from a variety of biological contexts and with a variety of methods, demonstrating the power of 3D localization for understanding complex systems. PMID:28151646

Statistical and Economic Techniques for Site-specific Nematode Management.

PubMed

Liu, Zheng; Griffin, Terry; Kirkpatrick, Terrence L

2014-03-01

Recent advances in precision agriculture technologies and spatial statistics allow realistic, site-specific estimation of nematode damage to field crops and provide a platform for the site-specific delivery of nematicides within individual fields. This paper reviews the spatial statistical techniques that model correlations among neighboring observations and develop a spatial economic analysis to determine the potential of site-specific nematicide application. The spatial econometric methodology applied in the context of site-specific crop yield response contributes to closing the gap between data analysis and realistic site-specific nematicide recommendations and helps to provide a practical method of site-specifically controlling nematodes.

Removing the Impact of Correlated PSF Uncertainties in Weak Lensing

NASA Astrophysics Data System (ADS)

Lu, Tianhuan; Zhang, Jun; Dong, Fuyu; Li, Yingke; Liu, Dezi; Fu, Liping; Li, Guoliang; Fan, Zuhui

2018-05-01

Accurate reconstruction of the spatial distributions of the point-spread function (PSF) is crucial for high precision cosmic shear measurements. Nevertheless, current methods are not good at recovering the PSF fluctuations of high spatial frequencies. In general, the residual PSF fluctuations are spatially correlated, and therefore can significantly contaminate the correlation functions of the weak lensing signals. We propose a method to correct for this contamination statistically, without any assumptions on the PSF and galaxy morphologies or their spatial distribution. We demonstrate our idea with the data from the W2 field of CFHTLenS.

Precision of systematic and random sampling in clustered populations: habitat patches and aggregating organisms.

PubMed

McGarvey, Richard; Burch, Paul; Matthews, Janet M

2016-01-01

Natural populations of plants and animals spatially cluster because (1) suitable habitat is patchy, and (2) within suitable habitat, individuals aggregate further into clusters of higher density. We compare the precision of random and systematic field sampling survey designs under these two processes of species clustering. Second, we evaluate the performance of 13 estimators for the variance of the sample mean from a systematic survey. Replicated simulated surveys, as counts from 100 transects, allocated either randomly or systematically within the study region, were used to estimate population density in six spatial point populations including habitat patches and Matérn circular clustered aggregations of organisms, together and in combination. The standard one-start aligned systematic survey design, a uniform 10 x 10 grid of transects, was much more precise. Variances of the 10 000 replicated systematic survey mean densities were one-third to one-fifth of those from randomly allocated transects, implying transect sample sizes giving equivalent precision by random survey would need to be three to five times larger. Organisms being restricted to patches of habitat was alone sufficient to yield this precision advantage for the systematic design. But this improved precision for systematic sampling in clustered populations is underestimated by standard variance estimators used to compute confidence intervals. True variance for the survey sample mean was computed from the variance of 10 000 simulated survey mean estimates. Testing 10 published and three newly proposed variance estimators, the two variance estimators (v) that corrected for inter-transect correlation (ν₈ and ν(W)) were the most accurate and also the most precise in clustered populations. These greatly outperformed the two "post-stratification" variance estimators (ν₂ and ν₃) that are now more commonly applied in systematic surveys. Similar variance estimator performance rankings were found with a second differently generated set of spatial point populations, ν₈ and ν(W) again being the best performers in the longer-range autocorrelated populations. However, no systematic variance estimators tested were free from bias. On balance, systematic designs bring more narrow confidence intervals in clustered populations, while random designs permit unbiased estimates of (often wider) confidence interval. The search continues for better estimators of sampling variance for the systematic survey mean.

Dynamic illumination of spatially restricted or large brain volumes via a single tapered optical fiber

PubMed Central

Pisanello, Marco; Oldenburg, Ian A.; Sileo, Leonardo; Markowitz, Jeffrey E.; Peterson, Ralph E.; Della Patria, Andrea; Haynes, Trevor M.; Emara, Mohamed S.; Spagnolo, Barbara; Datta, Sandeep Robert; De Vittorio, Massimo; Sabatini, Bernardo L.

2017-01-01

Optogenetics promises spatiotemporal precise control of neural processes using light. However, the spatial extent of illumination within the brain is difficult to control and cannot be adjusted using standard fiber optics. We demonstrate that optical fibers with tapered tips can be used to illuminate either spatially restricted or large brain volumes. Remotely adjusting the light input angle to the fiber varies the light-emitting portion of the taper over several millimeters without movement of the implant. We use this mode to activate dorsal versus ventral striatum of individual mice and reveal different effects of each manipulation on motor behavior. Conversely, injecting light over the full numerical aperture of the fiber results in light emission from the entire taper surface, achieving broader and more efficient optogenetic activation of neurons when compared to the standard flat-faced fiber stimulation. Thus, tapered fibers permit focal or broad illumination that can be precisely and dynamically matched to experimental needs. PMID:28628101

NGC 2548: clumpy spatial and kinematic structure in an intermediate-age Galactic cluster

NASA Astrophysics Data System (ADS)

Vicente, Belén; Sánchez, Néstor; Alfaro, Emilio J.

2016-09-01

NGC 2548 is a ˜400-500 Myr old open cluster with evidence of spatial substructures likely caused by its interaction with the Galactic disc. In this work we use precise astrometric data from the Carte du Ciel - San Fernando (CdC-SF) catalogue to study the clumpy structure in this cluster. We confirm the fragmented structure of NGC 2548 but, additionally, the relatively high precision of our kinematic data lead us to the first detection of substructures in the proper motion space of a stellar cluster. There are three spatially separated cores each of which has its own counterpart in the proper motion distribution. The two main cores lie nearly parallel to the Galactic plane whereas the third one is significantly fainter than the others and it moves towards the Galactic plane separating from the rest of the cluster. We derive core positions and proper motions, as well as the stars belonging to each core.

Dynamic illumination of spatially restricted or large brain volumes via a single tapered optical fiber.

PubMed

Pisanello, Ferruccio; Mandelbaum, Gil; Pisanello, Marco; Oldenburg, Ian A; Sileo, Leonardo; Markowitz, Jeffrey E; Peterson, Ralph E; Della Patria, Andrea; Haynes, Trevor M; Emara, Mohamed S; Spagnolo, Barbara; Datta, Sandeep Robert; De Vittorio, Massimo; Sabatini, Bernardo L

2017-08-01

Optogenetics promises precise spatiotemporal control of neural processes using light. However, the spatial extent of illumination within the brain is difficult to control and cannot be adjusted using standard fiber optics. We demonstrate that optical fibers with tapered tips can be used to illuminate either spatially restricted or large brain volumes. Remotely adjusting the light input angle to the fiber varies the light-emitting portion of the taper over several millimeters without movement of the implant. We use this mode to activate dorsal versus ventral striatum of individual mice and reveal different effects of each manipulation on motor behavior. Conversely, injecting light over the full numerical aperture of the fiber results in light emission from the entire taper surface, achieving broader and more efficient optogenetic activation of neurons, compared to standard flat-faced fiber stimulation. Thus, tapered fibers permit focal or broad illumination that can be precisely and dynamically matched to experimental needs.

An atom interferometer inside a hollow-core photonic crystal fiber

PubMed Central

Xin, Mingjie; Leong, Wui Seng; Chen, Zilong; Lan, Shau-Yu

2018-01-01

Coherent interactions between electromagnetic and matter waves lie at the heart of quantum science and technology. However, the diffraction nature of light has limited the scalability of many atom-light–based quantum systems. We use the optical fields in a hollow-core photonic crystal fiber to spatially split, reflect, and recombine a coherent superposition state of free-falling 85Rb atoms to realize an inertia-sensitive atom interferometer. The interferometer operates over a diffraction-free distance, and the contrasts and phase shifts at different distances agree within one standard error. The integration of phase coherent photonic and quantum systems here shows great promise to advance the capability of atom interferometers in the field of precision measurement and quantum sensing with miniature design of apparatus and high efficiency of laser power consumption. PMID:29372180

[Usefulness of computed tomography with three-dimensional reconstructions in visualization of cervical spine malformation of a child with Sprengel's deformity].

PubMed

Wawrzynek, Wojciech; Siemianowicz, Anna; Koczy, Bogdan; Kasprowska, Sabina; Besler, Krzysztof

2005-01-01

The Sprengel's deformity is a congenital anomaly of the shoulder girdle with an elevation of the scapula and limitation of movement of the shoulder. Sprengel's deformity is frequently associated with cervical spine malformations such as: spinal synostosis, spina bifida and an abnormal omovertebral fibrous, cartilaginous or osseus connection. The diagnosis of Sprengel's deformity is based on a clinical examination and radiological procedures. In every case of Sprengel's deformity plain radiography and computed tomography should be performed. Three-dimensional (3D) reconstructions allow to visualize precise topography and spatial proportions of examined bone structures. 3D reconstruction also enables an optional rotation of visualized bone structures in order to clarify the anatomical abnormalities and to plan surgical treatment.

Short memory fuzzy fusion image recognition schema employing spatial and Fourier descriptors

NASA Astrophysics Data System (ADS)

Raptis, Sotiris N.; Tzafestas, Spyros G.

2001-03-01

Single images quite often do not bear enough information for precise interpretation due to a variety of reasons. Multiple image fusion and adequate integration recently became the state of the art in the pattern recognition field. In this paper presented here and enhanced multiple observation schema is discussed investigating improvements to the baseline fuzzy- probabilistic image fusion methodology. The first innovation introduced consists in considering only a limited but seemingly ore effective part of the uncertainty information obtained by a certain time restricting older uncertainty dependencies and alleviating computational burden that is now needed for short sequence (stored into memory) of samples. The second innovation essentially grouping them into feature-blind object hypotheses. Experiment settings include a sequence of independent views obtained by camera being moved around the investigated object.

X-ray driven reaction front dynamics at calcite-water interfaces

DOE PAGES

Laanait, Nouamane; Callagon, Erika Blanca R.; Zhang, Zhan; ...

2015-09-18

The interface of minerals with aqueous solutions is central to geochemical reactivity, hosting processes that span multiple spatiotemporal scales. Understanding such processes requires spatially and temporally resolved observations, and experimental controls that precisely manipulate the interfacial thermodynamic state. Using the intense radiation fields of a focused synchrotron X-ray beam, we drove dissolution at the calcite-aqueous interface and simultaneously probed the dynamics of the propagating reaction fronts using surface X-ray microscopy. Evolving surface structures are controlled by the time-dependent solution composition as characterized by a kinetic reaction model. At extreme disequilibria, the onset of reaction front instabilities was observed with velocitiesmore » of >30 nanometers per second. As a result, these instabilities are identified as a signature of transport-limited dissolution of calcite under extreme disequilibrium.« less

Performance evaluation and geologic utility of LANDSAT 4 TM and MSS scanners

NASA Technical Reports Server (NTRS)

Paley, H. N.

1983-01-01

Experiments using artificial targets (polyethylene sheets) to help calibrate and evaluate atmospheric effects as well as the radiometric precision and spatial characteristics of the NS-001 and TM sensor systems were attempted and show the technical feasibility of using plastic targets for such studies, although weather precluded successful TM data acquisition. Tapes for six LANDSAT 4 TM scenes were acquired and data processing began. Computer enhanced TM simulator and LANDSAT 4 TM data were compared for a porphyry copper deposit in Southern Arizona. Preliminary analyses performed on two TM scenes acquired in the CCT-PT format, show the TM data appear to contain a marked increase in geologically useful information; however, a number of instrumental processing artifacts may well limit the ability of the geologist to fully extract this information.

Electronic energy transfer: Localized operator partitioning of electronic energy in composite quantum systems

NASA Astrophysics Data System (ADS)

Khan, Yaser; Brumer, Paul

2012-11-01

A Hamiltonian based approach using spatially localized projection operators is introduced to give precise meaning to the chemically intuitive idea of the electronic energy on a quantum subsystem. This definition facilitates the study of electronic energy transfer in arbitrarily coupled quantum systems. In particular, the decomposition scheme can be applied to molecular components that are strongly interacting (with significant orbital overlap) as well as to isolated fragments. The result defines a consistent electronic energy at all internuclear distances, including the case of separated fragments, and reduces to the well-known Förster and Dexter results in their respective limits. Numerical calculations of coherent energy and charge transfer dynamics in simple model systems are presented and the effect of collisionally induced decoherence is examined.

Low frequency noise fiber delay stabilized laser with reduced sensitivity to acceleration

NASA Astrophysics Data System (ADS)

Argence, B.; Clivati, C.; Dournaux, J.-L.; Holleville, D.; Faure, B.; Lemonde, P.; Santarelli, G.

2017-11-01

Lasers with sub-hertz line-width and fractional frequency instability around 1×10-15 for 0.1 s to 10 s averaging time are currently realized by locking onto an ultra-stable Fabry-Perot cavity using the Pound-Drever-Hall method. This powerful method requires tight alignment of free space optical components, precise polarization adjustment and spatial mode matching. To circumvent these issues, we use an all-fiber Michelson interferometer with a long fiber spool as a frequency reference and a heterodyne detection technique with a fibered acousto optical modulator (AOM)1. At low Fourier frequencies, the frequency noise of our system is mainly limited by mechanical vibrations, an issue that has already been explored in the field of optoelectronic oscillators.2,3,4

Beyond DNA origami: A look on the bright future of nucleic acid nanotechnology

PubMed Central

Michelotti, Nicole; Johnson-Buck, Alexander; Manzo, Anthony J.

2012-01-01

Nucleic acid nanotechnology exploits the programmable molecular recognition properties of natural and synthetic nucleic acids to assemble structures with nanometer-scale precision. In 2006, DNA origami transformed the field by providing a versatile platform for self-assembly of arbitrary shapes from one long DNA strand held in place by hundreds of short, site-specific (spatially addressable) DNA ”staples”. This revolutionary approach has led to the creation of a multitude of 2D and 3D scaffolds that form the basis for functional nanodevices. Not limited to nucleic acids, these nanodevices can incorporate other structural and functional materials, such as proteins and nanoparticles, making them broadly useful for current and future applications in emerging fields such as nanomedicine, nanoelectronics, and alternative energy. PMID:22131292

Precise dating of Dansgaard-Oeschger climate oscillations in western Europe from stalagmite data.

PubMed

Genty, D; Blamart, D; Ouahdi, R; Gilmour, M; Baker, A; Jouzel, J; Van-Exter, Sandra

2003-02-20

The signature of Dansgaard-Oeschger events--millennial-scale abrupt climate oscillations during the last glacial period--is well established in ice cores and marine records. But the effects of such events in continental settings are not as clear, and their absolute chronology is uncertain beyond the limit of (14)C dating and annual layer counting for marine records and ice cores, respectively. Here we present carbon and oxygen isotope records from a stalagmite collected in southwest France which have been precisely dated using 234U/230Th ratios. We find rapid climate oscillations coincident with the established Dansgaard-Oeschger events between 83,000 and 32,000 years ago in both isotope records. The oxygen isotope signature is similar to a record from Soreq cave, Israel, and deep-sea records, indicating the large spatial scale of the climate oscillations. The signal in the carbon isotopes gives evidence of drastic and rapid vegetation changes in western Europe, an important site in human cultural evolution. We also find evidence for a long phase of extremely cold climate in southwest France between 61.2 +/- 0.6 and 67.4 +/- 0.9 kyr ago.

Polarization selective phase-change nanomodulator

PubMed Central

Appavoo, Kannatassen; Haglund Jr., Richard F.

2014-01-01

Manipulating optical signals below the diffraction limit is crucial for next-generation data-storage and telecommunication technologies. Although controlling the flow of light around nanoscale waveguides was achieved over a decade ago, modulating optical signals at terahertz frequencies within nanoscale volumes remains a challenge. Since the physics underlying any modulator relies on changes in dielectric properties, the incorporation of strongly electron-correlated materials (SECMs) has been proposed because they can exhibit orders of magnitude changes in electrical and optical properties with modest thermal, electrical or optical trigger signals. Here we demonstrate a hybrid nanomodulator of deep sub-wavelength dimensions with an active volume of only 0.002 µm3 by spatially confining light on the nanometre length scale using a plasmonic nanostructure while simultaneously controlling the reactive near-field environment at its optical focus with a single, precisely positioned SECM nanostructure. Since the nanomodulator functionality hinges on this near-field electromagnetic interaction, the modulation is also selectively responsive to polarization. This architecture suggests one path for designing reconfigurable optoelectronic building blocks with responses that can be tailored with exquisite precision by varying size, geometry, and the intrinsic materials properties of the hybrid elements. PMID:25346427

Detection of the lunar body tide by the Lunar Orbiter Laser Altimeter

PubMed Central

Mazarico, Erwan; Barker, Michael K; Neumann, Gregory A; Zuber, Maria T; Smith, David E

2014-01-01

The Lunar Orbiter Laser Altimeter instrument onboard the Lunar Reconnaissance Orbiter spacecraft collected more than 5 billion measurements in the nominal 50 km orbit over ∼10,000 orbits. The data precision, geodetic accuracy, and spatial distribution enable two-dimensional crossovers to be used to infer relative radial position corrections between tracks to better than ∼1 m. We use nearly 500,000 altimetric crossovers to separate remaining high-frequency spacecraft trajectory errors from the periodic radial surface tidal deformation. The unusual sampling of the lunar body tide from polar lunar orbit limits the size of the typical differential signal expected at ground track intersections to ∼10 cm. Nevertheless, we reliably detect the topographic tidal signal and estimate the associated Love number h2 to be 0.0371 ± 0.0033, which is consistent with but lower than recent results from lunar laser ranging. Key Points Altimetric data are used to create radial constraints on the tidal deformationThe body tide amplitude is estimated from the crossover dataThe estimated Love number is consistent with previous estimates but more precise PMID:26074646

Impact of atmospheric anisoplanaticity on earth-to-satellite time transfer over laser communication links

NASA Astrophysics Data System (ADS)

Belmonte, Aniceto; Taylor, Michael T.; Hollberg, Leo; Kahn, Joseph M.

2017-02-01

The need for an accurate time and position reference on orbiting platforms motivates the study of time transfer over satellite optical communication links. The transfer of precise optical clock signals to space would benefit many fields in fundamental science and applications. However, the precise role of atmospheric turbulence during the optical time transfer process is not well-known and documented. In free-space optical links, atmospheric turbulence represents a major impairment, since it causes degradation of the spatial and temporal coherence of the optical signals. We present possible link scenarios in which the atmospheric channel behavior for time transfer between ground and space can be investigated, and have identified the major challenges to be overcome. We found in our analysis that, despite the limited reciprocity in uplink and downlink propagation, partial two-way cancellation of atmospheric effects still occurs. We established that laser communication links make possible high-quality time transfer in most practical propagation scenarios and over a single satellite visibility period. Our results demonstrate that sharing of optical communication resources for optical time transfer and range determination is an effective and relevant scheme for space clock developments and enabling for future space missions.

Polarization selective phase-change nanomodulator

DOE PAGES

Appavoo, Kannatassen; Haglund Jr., Richard F.

2014-10-27

Manipulating optical signals below the diffraction limit is crucial for next-generation data-storage and telecommunication technologies. Although controlling the flow of light around nanoscale waveguides was achieved over a decade ago, modulating optical signals at terahertz frequencies within nanoscale volumes remains a challenge. Since the physics underlying any modulator relies on changes in dielectric properties, the incorporation of strongly electron-correlated materials (SECMs) has been proposed because they can exhibit orders of magnitude changes in electrical and optical properties with modest thermal, electrical or optical trigger signals. Here we demonstrate a hybrid nanomodulator of deep sub-wavelength dimensions with an active volume ofmore » only 0.002 µm 3 by spatially confining light on the nanometre length scale using a plasmonic nanostructure while simultaneously controlling the reactive near-field environment at its optical focus with a single, precisely positioned SECM nanostructure. Since the nanomodulator functionality hinges on this near-field electromagnetic interaction, the modulation is also selectively responsive to polarization. Lastly, this architecture suggests one path for designing reconfigurable optoelectronic building blocks with responses that can be tailored with exquisite precision by varying size, geometry, and the intrinsic materials properties of the hybrid elements.« less

Molecular deconstruction, detection, and computational prediction of microenvironment-modulated cellular responses to cancer therapeutics

PubMed Central

LaBarge, Mark A; Parvin, Bahram; Lorens, James B

2014-01-01

The field of bioengineering has pioneered the application of new precision fabrication technologies to model the different geometric, physical or molecular components of tissue microenvironments on solid-state substrata. Tissue engineering approaches building on these advances are used to assemble multicellular mimetic-tissues where cells reside within defined spatial contexts. The functional responses of cells in fabricated microenvironments has revealed a rich interplay between the genome and extracellular effectors in determining cellular phenotypes, and in a number of cases has revealed the dominance of microenvironment over genotype. Precision bioengineered substrata are limited to a few aspects, whereas cell/tissue-derived microenvironments have many undefined components. Thus introducing a computational module may serve to integrate these types of platforms to create reasonable models of drug responses in human tissues. This review discusses how combinatorial microenvironment microarrays and other biomimetic microenvironments have revealed emergent properties of cells in particular microenvironmental contexts, the platforms that can measure phenotypic changes within those contexts, and the computational tools that can unify the microenvironment-imposed functional phenotypes with underlying constellations of proteins and genes. Ultimately we propose that a merger of these technologies will enable more accurate pre-clinical drug discovery. PMID:24582543

Laser assisted robotic surgery in cornea transplantation

NASA Astrophysics Data System (ADS)

Rossi, Francesca; Micheletti, Filippo; Magni, Giada; Pini, Roberto; Menabuoni, Luca; Leoni, Fabio; Magnani, Bernardo

2017-03-01

Robotic surgery is a reality in several surgical fields, such as in gastrointestinal surgery. In ophthalmic surgery the required high spatial precision is limiting the application of robotic system, and even if several attempts have been designed in the last 10 years, only some application in retinal surgery were tested in animal models. The combination of photonics and robotics can really open new frontiers in minimally invasive surgery, improving the precision, reducing tremor, amplifying scale of motion, and automating the procedure. In this manuscript we present the preliminary results in developing a vision guided robotic platform for laser-assisted anterior eye surgery. The robotic console is composed by a robotic arm equipped with an "end effector" designed to deliver laser light to the anterior corneal surface. The main intended application is for laser welding of corneal tissue in laser assisted penetrating keratoplasty and endothelial keratoplasty. The console is equipped with an integrated vision system. The experiment originates from a clear medical demand in order to improve the efficacy of different surgical procedures: when the prototype will be optimized, other surgical areas will be included in its application, such as neurosurgery, urology and spinal surgery.

A robotic platform for laser welding of corneal tissue

NASA Astrophysics Data System (ADS)

Rossi, Francesca; Micheletti, Filippo; Magni, Giada; Pini, Roberto; Menabuoni, Luca; Leoni, Fabio; Magnani, Bernardo

2017-07-01

Robotic surgery is a reality in several surgical fields, such as in gastrointestinal surgery. In ophthalmic surgery the required high spatial precision is limiting the application of robotic system, and even if several attempts have been designed in the last 10 years, only some application in retinal surgery were tested in animal models. The combination of photonics and robotics can really open new frontiers in minimally invasive surgery, improving the precision, reducing tremor, amplifying scale of motion, and automating the procedure. In this manuscript we present the preliminary results in developing a vision guided robotic platform for laser-assisted anterior eye surgery. The robotic console is composed by a robotic arm equipped with an "end effector" designed to deliver laser light to the anterior corneal surface. The main intended application is for laser welding of corneal tissue in laser assisted penetrating keratoplasty and endothelial keratoplasty. The console is equipped with an integrated vision system. The experiment originates from a clear medical demand in order to improve the efficacy of different surgical procedures: when the prototype will be optimized, other surgical areas will be included in its application, such as neurosurgery, urology and spinal surgery.

Is a matrix exponential specification suitable for the modeling of spatial correlation structures?

PubMed Central

Strauß, Magdalena E.; Mezzetti, Maura; Leorato, Samantha

2018-01-01

This paper investigates the adequacy of the matrix exponential spatial specifications (MESS) as an alternative to the widely used spatial autoregressive models (SAR). To provide as complete a picture as possible, we extend the analysis to all the main spatial models governed by matrix exponentials comparing them with their spatial autoregressive counterparts. We propose a new implementation of Bayesian parameter estimation for the MESS model with vague prior distributions, which is shown to be precise and computationally efficient. Our implementations also account for spatially lagged regressors. We further allow for location-specific heterogeneity, which we model by including spatial splines. We conclude by comparing the performances of the different model specifications in applications to a real data set and by running simulations. Both the applications and the simulations suggest that the spatial splines are a flexible and efficient way to account for spatial heterogeneities governed by unknown mechanisms. PMID:29492375

Small-scale spatial variation in population dynamics and fishermen response in a coastal marine fishery.

PubMed

Wilson, Jono R; Kay, Matthew C; Colgate, John; Qi, Roy; Lenihan, Hunter S

2012-01-01

A major challenge for small-scale fisheries management is high spatial variability in the demography and life history characteristics of target species. Implementation of local management actions that can reduce overfishing and maximize yields requires quantifying ecological heterogeneity at small spatial scales and is therefore limited by available resources and data. Collaborative fisheries research (CFR) is an effective means to collect essential fishery information at local scales, and to develop the social, technical, and logistical framework for fisheries management innovation. We used a CFR approach with fishing partners to collect and analyze geographically precise demographic information for grass rockfish (Sebastes rastrelliger), a sedentary, nearshore species harvested in the live fish fishery on the West Coast of the USA. Data were used to estimate geographically distinct growth rates, ages, mortality, and length frequency distributions in two environmental subregions of the Santa Barbara Channel, CA, USA. Results indicated the existence of two subpopulations; one located in the relatively cold, high productivity western Channel, and another in the relatively warm, low productivity eastern Channel. We parameterized yield per recruit models, the results of which suggested nearly twice as much yield per recruit in the high productivity subregion relative to the low productivity subregion. The spatial distribution of fishing in the two environmental subregions demonstrated a similar pattern to the yield per recruit outputs with greater landings, effort, and catch per unit effort in the high productivity subregion relative to the low productivity subregion. Understanding how spatial variability in stock dynamics translates to variability in fishery yield and distribution of effort is important to developing management plans that maximize fishing opportunities and conservation benefits at local scales.

A mobile app for delivering in-field soil data for precision agriculture

NASA Astrophysics Data System (ADS)

Isaacs, John P.; Stojanovic, Vladeta; Falconer, Ruth E.

2015-04-01

In the last decade precision agriculture has grown from a concept to an emerging technology, largely due to the maturing of GPS and mobile mapping. We investigated methods for reliable delivery and display of appropriate and context aware in-field farm data on mobile devices by developing a prototype android mobile app. The 3D app was developed using OpenGL ES 2.0 and written in Java, using the Android Development Tools (ADT) SDK. The app is able to obtain GPS coordinates and automatically synchronise the view and load relevant data based on the user's location. The intended audience of the mobile app is farmers and agronomists. Apps are becoming an essential tool in an agricultural professional's arsenal however most existing apps are limited to 2D display of data even though the modern chips in mobile devices can support the display of 3D graphics at interactive rates using technologies such as webGL. This project investigated the use of games techniques in the delivery and 3D display of field data, recognising that this may be a departure from the way the field data is currently delivered and displayed to farmers and agronomists. Different interactive 3D visualisation methods presenting spatial and temporal variation in yield values were developed and tested. It is expected that this app can be used by farmers and agronomists to support decision making in the field of precision agriculture and this is a growing market in UK and Europe.

Modulation of Temporal Precision in Thalamic Population Responses to Natural Visual Stimuli

PubMed Central

Desbordes, Gaëlle; Jin, Jianzhong; Alonso, Jose-Manuel; Stanley, Garrett B.

2010-01-01

Natural visual stimuli have highly structured spatial and temporal properties which influence the way visual information is encoded in the visual pathway. In response to natural scene stimuli, neurons in the lateral geniculate nucleus (LGN) are temporally precise – on a time scale of 10–25 ms – both within single cells and across cells within a population. This time scale, established by non stimulus-driven elements of neuronal firing, is significantly shorter than that of natural scenes, yet is critical for the neural representation of the spatial and temporal structure of the scene. Here, a generalized linear model (GLM) that combines stimulus-driven elements with spike-history dependence associated with intrinsic cellular dynamics is shown to predict the fine timing precision of LGN responses to natural scene stimuli, the corresponding correlation structure across nearby neurons in the population, and the continuous modulation of spike timing precision and latency across neurons. A single model captured the experimentally observed neural response, across different levels of contrasts and different classes of visual stimuli, through interactions between the stimulus correlation structure and the nonlinearity in spike generation and spike history dependence. Given the sensitivity of the thalamocortical synapse to closely timed spikes and the importance of fine timing precision for the faithful representation of natural scenes, the modulation of thalamic population timing over these time scales is likely important for cortical representations of the dynamic natural visual environment. PMID:21151356

The effects of selective and divided attention on sensory precision and integration.

PubMed

Odegaard, Brian; Wozny, David R; Shams, Ladan

2016-02-12

In our daily lives, our capacity to selectively attend to stimuli within or across sensory modalities enables enhanced perception of the surrounding world. While previous research on selective attention has studied this phenomenon extensively, two important questions still remain unanswered: (1) how selective attention to a single modality impacts sensory integration processes, and (2) the mechanism by which selective attention improves perception. We explored how selective attention impacts performance in both a spatial task and a temporal numerosity judgment task, and employed a Bayesian Causal Inference model to investigate the computational mechanism(s) impacted by selective attention. We report three findings: (1) in the spatial domain, selective attention improves precision of the visual sensory representations (which were relatively precise), but not the auditory sensory representations (which were fairly noisy); (2) in the temporal domain, selective attention improves the sensory precision in both modalities (both of which were fairly reliable to begin with); (3) in both tasks, selective attention did not exert a significant influence over the tendency to integrate sensory stimuli. Therefore, it may be postulated that a sensory modality must possess a certain inherent degree of encoding precision in order to benefit from selective attention. It also appears that in certain basic perceptual tasks, the tendency to integrate crossmodal signals does not depend significantly on selective attention. We conclude with a discussion of how these results relate to recent theoretical considerations of selective attention. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

The Spatial Vision Tree: A Generic Pattern Recognition Engine- Scientific Foundations, Design Principles, and Preliminary Tree Design

NASA Technical Reports Server (NTRS)

Rahman, Zia-ur; Jobson, Daniel J.; Woodell, Glenn A.

2010-01-01

New foundational ideas are used to define a novel approach to generic visual pattern recognition. These ideas proceed from the starting point of the intrinsic equivalence of noise reduction and pattern recognition when noise reduction is taken to its theoretical limit of explicit matched filtering. This led us to think of the logical extension of sparse coding using basis function transforms for both de-noising and pattern recognition to the full pattern specificity of a lexicon of matched filter pattern templates. A key hypothesis is that such a lexicon can be constructed and is, in fact, a generic visual alphabet of spatial vision. Hence it provides a tractable solution for the design of a generic pattern recognition engine. Here we present the key scientific ideas, the basic design principles which emerge from these ideas, and a preliminary design of the Spatial Vision Tree (SVT). The latter is based upon a cryptographic approach whereby we measure a large aggregate estimate of the frequency of occurrence (FOO) for each pattern. These distributions are employed together with Hamming distance criteria to design a two-tier tree. Then using information theory, these same FOO distributions are used to define a precise method for pattern representation. Finally the experimental performance of the preliminary SVT on computer generated test images and complex natural images is assessed.

Identification of understory invasive exotic plants with remote sensing in urban forests

NASA Astrophysics Data System (ADS)

Shouse, Michael; Liang, Liang; Fei, Songlin

2013-04-01

Invasive exotic plants (IEP) pose a significant threat to many ecosystems. To effectively manage IEP, it is important to efficiently detect their presences and determine their distribution patterns. Remote sensing has been a useful tool to map IEP but its application is limited in urban forests, which are often the sources and sinks for IEP. In this study, we examined the feasibility and tradeoffs of species level IEP mapping using multiple remote sensing techniques in a highly complex urban forest setting. Bush honeysuckle (Lonicera maackii), a pervasive IEP in eastern North America, was used as our modeling species. Both medium spatial resolution (MSR) and high spatial resolution (HSR) imagery were employed in bush honeysuckle mapping. The importance of spatial scale was also examined using an up-scaling simulation from the HSR object based classification. Analysis using both MSR and HSR imagery provided viable results for IEP distribution mapping in urban forests. Overall mapping accuracy ranged from 89.8% to 94.9% for HSR techniques and from 74.6% to 79.7% for MSR techniques. As anticipated, classification accuracy reduces as pixel size increases. HSR based techniques produced the most desirable results, therefore is preferred for precise management of IEP in heterogeneous environment. However, the use of MSR techniques should not be ruled out given their wide availability and moderate accuracy.

Stochastic optical reconstruction microscopy-based relative localization analysis (STORM-RLA) for quantitative nanoscale assessment of spatial protein organization.

PubMed

Veeraraghavan, Rengasayee; Gourdie, Robert G

2016-11-07

The spatial association between proteins is crucial to understanding how they function in biological systems. Colocalization analysis of fluorescence microscopy images is widely used to assess this. However, colocalization analysis performed on two-dimensional images with diffraction-limited resolution merely indicates that the proteins are within 200-300 nm of each other in the xy-plane and within 500-700 nm of each other along the z-axis. Here we demonstrate a novel three-dimensional quantitative analysis applicable to single-molecule positional data: stochastic optical reconstruction microscopy-based relative localization analysis (STORM-RLA). This method offers significant advantages: 1) STORM imaging affords 20-nm resolution in the xy-plane and <50 nm along the z-axis; 2) STORM-RLA provides a quantitative assessment of the frequency and degree of overlap between clusters of colabeled proteins; and 3) STORM-RLA also calculates the precise distances between both overlapping and nonoverlapping clusters in three dimensions. Thus STORM-RLA represents a significant advance in the high-throughput quantitative assessment of the spatial organization of proteins. © 2016 Veeraraghavan and Gourdie. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

μ-Rainbow: CdSe Nanocrystal Photoluminescence Gradients via Laser Spike Annealing for Kinetic Investigations and Tunable Device Design.

PubMed

Treml, Benjamin E; Jacobs, Alan G; Bell, Robert T; Thompson, Michael O; Hanrath, Tobias

2016-02-10

Much of the promise of nanomaterials derives from their size-dependent, and hence tunable, properties. Impressive advances have been made in the synthesis of nanoscale building blocks with precisely tailored size, shape and composition. Significant attention is now turning toward creating thin film structures in which size-dependent properties can be spatially programmed with high fidelity. Nonequilibrium processing techniques present exciting opportunities to create nanostructured thin films with unprecedented spatial control over their optical and electronic properties. Here, we demonstrate single scan laser spike annealing (ssLSA) on CdSe nanocrystal (NC) thin films as an experimental test bed to illustrate how the size-dependent photoluminescence (PL) emission can be tuned throughout the visible range and in spatially defined profiles during a single annealing step. Through control of the annealing temperature and time, we discovered that NC fusion is a kinetically limited process with a constant activation energy in over 2 orders of magnitude of NC growth rate. To underscore the broader technological implications of this work, we demonstrate the scalability of LSA to process large area NC films with periodically modulated PL emission, resulting in tunable emission properties of a large area film. New insights into the processing-structure-property relationships presented here offer significant advances in our fundamental understanding of kinetics of nanomaterials as well as technological implications for the production of nanomaterial films.

Imaging Optical Frequencies with 100  μHz Precision and 1.1  μm Resolution.

PubMed

Marti, G Edward; Hutson, Ross B; Goban, Akihisa; Campbell, Sara L; Poli, Nicola; Ye, Jun

2018-03-09

We implement imaging spectroscopy of the optical clock transition of lattice-trapped degenerate fermionic Sr in the Mott-insulating regime, combining micron spatial resolution with submillihertz spectral precision. We use these tools to demonstrate atomic coherence for up to 15 s on the clock transition and reach a record frequency precision of 2.5×10^{-19}. We perform the most rapid evaluation of trapping light shifts and record a 150 mHz linewidth, the narrowest Rabi line shape observed on a coherent optical transition. The important emerging capability of combining high-resolution imaging and spectroscopy will improve the clock precision, and provide a path towards measuring many-body interactions and testing fundamental physics.

Plasmonic micropillars for precision cell force measurement across a large field-of-view

NASA Astrophysics Data System (ADS)

Xiao, Fan; Wen, Ximiao; Tan, Xing Haw Marvin; Chiou, Pei-Yu

2018-01-01

A plasmonic micropillar platform with self-organized gold nanospheres is reported for the precision cell traction force measurement across a large field-of-view (FOV). Gold nanospheres were implanted into the tips of polymer micropillars by annealing gold microdisks with nanosecond laser pulses. Each gold nanosphere is physically anchored in the center of a pillar tip and serves as a strong, point-source-like light scattering center for each micropillar. This allows a micropillar to be clearly observed and precisely tracked even under a low magnification objective lens for the concurrent and precision measurement across a large FOV. A spatial resolution of 30 nm for the pillar deflection measurement has been accomplished on this platform with a 20× objective lens.

Quantifying uncertainty in national forest carbon stocks: challenges and opportunities for the United States National Greenhouse Gas Inventory

NASA Astrophysics Data System (ADS)

Clough, B.; Russell, M.; Domke, G. M.; Woodall, C. W.

2016-12-01

Uncertainty estimates are needed to establish confidence in national forest carbon stocks and to verify changes reported to the United Nations Framework Convention on Climate Change. Good practice guidance from the Intergovernmental Panel on Climate Change stipulates that uncertainty assessments should neither exaggerate nor underestimate the actual error within carbon stocks, yet methodological guidance for forests has been hampered by limited understanding of how complex dynamics give rise to errors across spatial scales (i.e., individuals to continents). This talk highlights efforts to develop a multi-scale, data-driven framework for assessing uncertainty within the United States (US) forest carbon inventory, and focuses on challenges and opportunities for improving the precision of national forest carbon stock estimates. Central to our approach is the calibration of allometric models with a newly established legacy biomass database for North American tree species, and the use of hierarchical models to link these data with the Forest Inventory and Analysis (FIA) database as well as remote sensing datasets. Our work suggests substantial risk for misestimating key sources of uncertainty including: (1) attributing more confidence in allometric models than what is warranted by the best available data; (2) failing to capture heterogeneity in biomass stocks due to environmental variation at regional scales; and (3) ignoring spatial autocorrelation and other random effects that are characteristic of national forest inventory data. Our results suggest these sources of error may be much higher than is generally assumed, though these results must be understood with the limited scope and availability of appropriate calibration data in mind. In addition to reporting on important sources of uncertainty, this talk will discuss opportunities to improve the precision of national forest carbon stocks that are motivated by our use of data-driven forecasting including: (1) improving the taxonomic and geographic scope of available biomass data; (2) direct attribution of landscape-level heterogeneity in biomass stocks to specific ecological processes; and (3) integration of expert opinion and meta-analysis to lessen the influence of often highly variable datasets on biomass stock forecasts.

Influence of aging on human sound localization

PubMed Central

Dobreva, Marina S.; O'Neill, William E.

2011-01-01

Errors in sound localization, associated with age-related changes in peripheral and central auditory function, can pose threats to self and others in a commonly encountered environment such as a busy traffic intersection. This study aimed to quantify the accuracy and precision (repeatability) of free-field human sound localization as a function of advancing age. Head-fixed young, middle-aged, and elderly listeners localized band-passed targets using visually guided manual laser pointing in a darkened room. Targets were presented in the frontal field by a robotically controlled loudspeaker assembly hidden behind a screen. Broadband targets (0.1–20 kHz) activated all auditory spatial channels, whereas low-pass and high-pass targets selectively isolated interaural time and intensity difference cues (ITDs and IIDs) for azimuth and high-frequency spectral cues for elevation. In addition, to assess the upper frequency limit of ITD utilization across age groups more thoroughly, narrowband targets were presented at 250-Hz intervals from 250 Hz up to ∼2 kHz. Young subjects generally showed horizontal overestimation (overshoot) and vertical underestimation (undershoot) of auditory target location, and this effect varied with frequency band. Accuracy and/or precision worsened in older individuals for broadband, high-pass, and low-pass targets, reflective of peripheral but also central auditory aging. In addition, compared with young adults, middle-aged, and elderly listeners showed pronounced horizontal localization deficiencies (imprecision) for narrowband targets within 1,250–1,575 Hz, congruent with age-related central decline in auditory temporal processing. Findings underscore the distinct neural processing of the auditory spatial cues in sound localization and their selective deterioration with advancing age. PMID:21368004

Advanced subsidence monitoring using persistent scatterer interferometry for Jharia Coal Field, Dhanbad, India

NASA Astrophysics Data System (ADS)

Thapa, Shailaja; Chatterjee, R. S.; Kumar, Dheeraj; Singh, K. B.; Sengar, Vivek

2017-10-01

This paper presents a spatiotemporal study of surface subsidence over urban area due to coal mining using Persistent scatterer interferometry. In the past few years Differential Interferometric Synthetic Aperture Radar has emerged as a very useful remote sensing technique for measuring land subsidence. It plays a vital role in insitu subsidence prediction of coal mining area. However there are some limitation viz. atmospheric decorrelation, temporal decorrelation and spatial decorrelation with conventional D-InSAR techniques, which can be overcome up to certain extent by using multiinterferogram framework approach. The Persistent Scatterer interferometry technique comprises of more number of SAR datasets, it only concentrates over the pixel which remain coherent over long time period. Persistent Scatterer interferometry makes deformation measurement on permanent scattering location for the targeted ground surface. Mainly, these permanent scatterer are manmade features like metallic bridges, dams, antennae roof of buildings etc. apart that some permanent scatterer may comprise of prominent stable natural targets. The results obtained from PS-InSAR gives more precised measurement of surface deformation. Total eight ALOS PALSAR scenes covering the time period from 2007 to 2010 have been utilized to produce ground deformation map using PSInSAR techniques for Jharia Coal field, Dhanbad. This is proven technique, which helps to identify the persistent land surface movement .The results were analyzed Sijua area in Jharia coalfield. The subsidence fringes were demarcated over the entire study area. The PSInSAR results were validated using precision leveling data provided by mining authorities. The results demonstrates that PSInSAR can be used as potential tool to highlight the subsidence prone area depending upon the spatial and temporal coherency of SAR data.

New Target for an Old Method: Hubble Measures Globular Cluster Parallax

NASA Astrophysics Data System (ADS)

Hensley, Kerry

2018-05-01

Measuring precise distances to faraway objects has long been a challenge in astrophysics. Now, one of the earliest techniques used to measure the distance to astrophysical objects has been applied to a metal-poor globular cluster for the first time.A Classic TechniqueAn artists impression of the European Space Agencys Gaia spacecraft. Gaia is on track to map the positions and motions of a billion stars. [ESA]Distances to nearby stars are often measured using the parallax technique tracing the tiny apparent motion of a target star against the background of more distant stars as Earth orbits the Sun. This technique has come a long way since it was first used in the 1800s to measure the distance to stars a few tens of light-years away; with the advent of space observatories like Hipparcos and Gaia, parallax can now be used to map the positions of stars out to thousands of light-years.Precise distance measurements arent only important for setting the scale of the universe, however; they can also help us better understand stellar evolution over the course of cosmic history. Stellar evolution models are often anchored to a reference star cluster, the properties of which must be known precisely. These precise properties can be readily determined for young, nearby open clusters using parallax measurements. But stellar evolution models that anchor on themore-distant, ancient, metal-poor globular clusters have been hampered by theless-precise indirect methods used tomeasure distance to these faraway clusters until now.Top: An image of NGC 6397 overlaid with the area scanned by Hubble (dashed green) and the footprint of the camera (solid green). The blue ellipse represents the parallax motion of a star in the cluster, exaggerated by a factor of ten thousand. Bottom: An example scan from this field. [Adapted from Brown et al. 2018]New Measurement to an Old ClusterThomas Brown (Space Telescope Science Institute) and collaborators used the Hubble Space Telescope todetermine the distance to NGC 6397, one of the nearest metal-poor globular clusters and anchor for one stellar population model. Brown and coauthors used a technique called spatial scanning to greatly broaden the reach of the parallax method.Spatial scanning was initially developed as a way to increase the signal-to-noise of exoplanet transit observations, but it has also greatly improved the prospects of astrometry precisely determining the separations between astronomical objects. In spatial scanning, the telescope moves while the exposure is being taken, spreading the light out across many pixels.Unprecedented PrecisionThis technique allowed the authors to achieve a precision of 20100microarcseconds. From the observed parallax angle of just 0.418 milliarcseconds (for reference, the moons angular size is about 5 million times larger on the sky!), Brown and collaborators refined the distance to NGC 6397 to 7,795 light-years, with a measurement error of only a few percent.Using spatial scanning, Hubble can make parallax measurements of nearby globular clusters, while Gaia has the potential to reach even farther. Looking ahead, the measurement made by Brown and collaborators can be combined with the recently released Gaia data to trim the uncertainty down to just 1%. This highlights the power of space telescopes to make extremely precise measurements of astoundingly large distances informing our models and helping us measure the universe.CitationThomas Brown et al 2018ApJL856 L6. doi:10.3847/2041-8213/aab55a

Resource selection by elk at two spatial scales in the Black Hills, South Dakota

Treesearch

Mark A. Rumble; R. Scott Gamo

2011-01-01

Understanding resource selection by elk (Cervus elaphus) at multiple spatial scales may provide information that will help resolve the increasing number of resource conflicts involving elk. We quantified vegetation at 412 sites where the precise location of elk was known by direct observation and 509 random sites in the Black Hills of South Dakota during 1998-2001. We...

Parameter Estimation with Entangled Photons Produced by Parametric Down-Conversion

NASA Technical Reports Server (NTRS)

Cable, Hugo; Durkin, Gabriel A.

2010-01-01

We explore the advantages offered by twin light beams produced in parametric down-conversion for precision measurement. The symmetry of these bipartite quantum states, even under losses, suggests that monitoring correlations between the divergent beams permits a high-precision inference of any symmetry-breaking effect, e.g., fiber birefringence. We show that the quantity of entanglement is not the key feature for such an instrument. In a lossless setting, scaling of precision at the ultimate "Heisenberg" limit is possible with photon counting alone. Even as photon losses approach 100% the precision is shot-noise limited, and we identify the crossover point between quantum and classical precision as a function of detected flux. The predicted hypersensitivity is demonstrated with a Bayesian simulation.

Parameter estimation with entangled photons produced by parametric down-conversion.

PubMed

Cable, Hugo; Durkin, Gabriel A

2010-07-02

We explore the advantages offered by twin light beams produced in parametric down-conversion for precision measurement. The symmetry of these bipartite quantum states, even under losses, suggests that monitoring correlations between the divergent beams permits a high-precision inference of any symmetry-breaking effect, e.g., fiber birefringence. We show that the quantity of entanglement is not the key feature for such an instrument. In a lossless setting, scaling of precision at the ultimate "Heisenberg" limit is possible with photon counting alone. Even as photon losses approach 100% the precision is shot-noise limited, and we identify the crossover point between quantum and classical precision as a function of detected flux. The predicted hypersensitivity is demonstrated with a Bayesian simulation.

Precision bounds for gradient magnetometry with atomic ensembles

NASA Astrophysics Data System (ADS)

Apellaniz, Iagoba; Urizar-Lanz, Iñigo; Zimborás, Zoltán; Hyllus, Philipp; Tóth, Géza

2018-05-01

We study gradient magnetometry with an ensemble of atoms with arbitrary spin. We calculate precision bounds for estimating the gradient of the magnetic field based on the quantum Fisher information. For quantum states that are invariant under homogeneous magnetic fields, we need to measure a single observable to estimate the gradient. On the other hand, for states that are sensitive to homogeneous fields, a simultaneous measurement is needed, as the homogeneous field must also be estimated. We prove that for the cases studied in this paper, such a measurement is feasible. We present a method to calculate precision bounds for gradient estimation with a chain of atoms or with two spatially separated atomic ensembles. We also consider a single atomic ensemble with an arbitrary density profile, where the atoms cannot be addressed individually, and which is a very relevant case for experiments. Our model can take into account even correlations between particle positions. While in most of the discussion we consider an ensemble of localized particles that are classical with respect to their spatial degree of freedom, we also discuss the case of gradient metrology with a single Bose-Einstein condensate.

Adaptive x-ray optics development at AOA-Xinetics

NASA Astrophysics Data System (ADS)

Lillie, Charles F.; Cavaco, Jeff L.; Brooks, Audrey D.; Ezzo, Kevin; Pearson, David D.; Wellman, John A.

2013-05-01

Grazing-incidence optics for X-ray applications require extremely smooth surfaces with precise mirror figures to provide well focused beams and small image spot sizes for astronomical telescopes and laboratory test facilities. The required precision has traditionally been achieved by time-consuming grinding and polishing of thick substrates with frequent pauses for precise metrology to check the mirror figure. More recently, substrates with high quality surface finish and figures have become available at reasonable cost, and techniques have been developed to mechanically adjust the figure of these traditionally polished substrates for ground-based applications. The beam-bending techniques currently in use are mechanically complex, however, with little control over mid-spatial frequency errors. AOA-Xinetics has been developing been developing techniques for shaping grazing incidence optics with surface-normal and surface-parallel electrostrictive Lead magnesium niobate (PMN) actuators bonded to mirror substrates for several years. These actuators are highly reliable; exhibit little to no hysteresis, aging or creep; and can be closely spaced to correct low and mid-spatial frequency errors in a compact package. In this paper we discuss recent development of adaptive x-ray optics at AOA-Xinetics.

Adaptive x-ray optics development at AOA-Xinetics

NASA Astrophysics Data System (ADS)

Lillie, Charles F.; Pearson, David D.; Cavaco, Jeffrey L.; Plinta, Audrey D.; Wellman, John A.

2012-10-01

Grazing-incidence optics for X-ray applications require extremely smooth surfaces with precise mirror figures to provide well focused beams and small image spot sizes for astronomical telescopes and laboratory test facilities. The required precision has traditionally been achieved by time-consuming grinding and polishing of thick substrates with frequent pauses for precise metrology to check the mirror figure. More recently, substrates with high quality surface finish and figures have become available at reasonable cost, and techniques have been developed to mechanically adjust the figure of these traditionally polished substrates for ground-based applications. The beam-bending techniques currently in use are mechanically complex, however, with little control over mid-spatial frequency errors. AOA-Xinetics has been developing been developing techniques for shaping grazing incidence optics with surface-normal and surface-parallel electrostrictive Lead magnesium niobate (PMN) actuators bonded to mirror substrates for several years. These actuators are highly reliable; exhibit little to no hysteresis, aging or creep; and can be closely spaced to correct low and mid-spatial frequency errors in a compact package. In this paper we discuss recent development of adaptive x-ray optics at AOAXinetics.

Precision Attitude Control for the BETTII Balloon-Borne Interferometer

NASA Technical Reports Server (NTRS)

Benford, Dominic J.; Fixsen, Dale J.; Rinehart. Stephen

2012-01-01

The Balloon Experimental Twin Telescope for Infrared Interferometry (BETTII) is an 8-meter baseline far-infrared interferometer to fly on a high altitude balloon. Operating at wavelengths of 30-90 microns, BETTII will obtain spatial and spectral information on science targets at angular resolutions down to less than half an arcsecond, a capability unmatched by other far-infrared facilities. This requires attitude control at a level ofless than a tenth of an arcsecond, a great challenge for a lightweight balloon-borne system. We have designed a precision attitude determination system to provide gondola attitude knowledge at a level of 2 milliarcseconds at rates up to 100Hz, with accurate absolute attitude determination at the half arcsecond level at rates of up to 10Hz. A mUlti-stage control system involving rigid body motion and tip-tilt-piston correction provides precision pointing stability to the level required for the far-infrared instrument to perform its spatial/spectral interferometry in an open-loop control. We present key aspects of the design of the attitude determination and control and its development status.

WIYN Open Cluster Study. XXXII. Stellar Radial Velocities in the Old Open Cluster NGC 188

NASA Astrophysics Data System (ADS)

Geller, Aaron M.; Mathieu, Robert D.; Harris, Hugh C.; McClure, Robert D.

2008-06-01

We present the results of our ongoing radial-velocity (RV) survey of the old (7 Gyr) open cluster NGC 188. Our WIYN 3.5 m data set spans a time baseline of 11 years, a magnitude range of 12 <= V <= 16.5 (1.18-0.94 M sun), and a 1° diameter region on the sky. With the addition of a Domain Astrophysical Observatory data set we extend our bright limit to V = 10.8 and, for some stars, extend our time baseline to 35 years. Our magnitude limits include solar-mass main-sequence stars, subgiants, giants, and blue stragglers (BSs), and our spatial coverage extends radially to 17 pc (~13 core radii). For the WIYN data we present a detailed description of our data reduction process and a thorough analysis of our measurement precision of 0.4 km s-1 for narrow-lined stars. We have measured radial velocities for 1046 stars in the direction of NGC 188, and have calculated RV membership probabilities for stars with >=3 measurements, finding 473 to be likely cluster members. We detect 124 velocity-variable cluster members, all of which are likely to be dynamically hard-binary stars. Using our single member stars, we find an average cluster radial velocity of -42.36 ± 0.04 km s-1. We use our precise RV and proper-motion membership data to greatly reduce field-star contamination in our cleaned color-magnitude diagram, from which we identify six stars of note that lie far from a standard single-star isochrone. We present a detailed study of the spatial distribution of cluster-member populations, and find the binaries to be centrally concentrated, providing evidence for the presence of mass segregation in NGC 188. We observe the BSs to populate a bimodal spatial distribution that is not centrally concentrated, suggesting that we may be observing two populations of BSs in NGC 188, including a centrally concentrated distribution as well as a halo population. Finally, we find NGC 188 to have a global RV dispersion of 0.64 ± 0.04 km s-1, which may be inflated by up to 0.23 km s-1 from unresolved binaries. When corrected for unresolved binaries, the NGC 188 RV dispersion has a nearly isothermal radial distribution. We use this mean-corrected velocity dispersion to derive a virial mass of 2300 ± 460 M sun .

Proceedings of the Workshop on Improvements to Photometry

NASA Technical Reports Server (NTRS)

Borucki, W. J. (Editor); Young, A. T. (Editor)

1984-01-01

The purposes of the workshop were to determine what astronomical problems would benefit by increased photometric precision, determine the current level of precision, identify the processes limiting the precision, and recommend approaches to improving photometric precision. Twenty representatives of the university, industry, and government communities participated. Results and recommendations are discussed.

Spatial Patterns and Sequential Sampling Plans for Predators of Aphis glycines (Hemiptera: Aphididae) in Minnesota Soybean.

PubMed

Tran, Anh K; Koch, Robert L

2017-06-01

The soybean aphid, Aphis glycines Matsumura, is an economically important soybean pest. Many studies have demonstrated that predatory insects are important in suppressing A. glycines population growth. However, to improve the utilization of predators in A. glycines management, sampling plans need to be developed and validated for predators. Aphid predators were sampled in soybean fields near Rosemount, Minnesota, from 2006-2007 and 2013-2015 with sample sizes of 20-80 plants. Sampling plans were developed for Orius insidiosus (Say), Harmonia axyridis (Pallas), and all aphidophagous Coccinellidae species combined. Taylor's power law parameters from the regression of log variance versus log mean suggested aggregated spatial patterns for immature and adult stages combined for O. insidiosus, H. axyridis, and Coccinellidae in soybean fields. Using the parameters from Taylor's power law and Green's method, sequential fixed-precision sampling plans were developed to estimate the density for each predator taxon at desired precision levels of 0.10 and 0.25. To achieve a desired precision of 0.10 and 0.25, the average sample number (ASN) ranged from 398-713 and 64-108 soybean plants, respectively, for all species. Resulting ASNs were relatively large and assumed impractical for most purposes; therefore, the desired precision levels were adjusted to determine the level of precision associated with a more practical ASN. Final analysis indicated an ASN of 38 soybean plants provided precision of 0.32-0.40 for the predators. Development of sampling plans should provide guidance for improved estimation of predator densities for A. glycines pest management programs and for research purposes. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

High-resolution observations of the globular cluster NGC 7099

NASA Astrophysics Data System (ADS)

Sams, Bruce Jones, III

The globular cluster NGC 7099 is a prototypical collapsed core cluster. Through a series of instrumental, observational, and theoretical observations, I have resolved its core structure using a ground based telescope. The core has a radius of 2.15 arcsec when imaged with a V band spatial resolution of 0.35 arcsec. Initial attempts at speckle imaging produced images of inadequate signal to noise and resolution. To explain these results, a new, fully general signal-to-noise model has been developed. It properly accounts for all sources of noise in a speckle observation, including aliasing of high spatial frequencies by inadequate sampling of the image plane. The model, called Full Speckle Noise (FSN), can be used to predict the outcome of any speckle imaging experiment. A new high resolution imaging technique called ACT (Atmospheric Correlation with a Template) was developed to create sharper astronomical images. ACT compensates for image motion due to atmospheric turbulence. ACT is similar to the Shift and Add algorithm, but uses apriori spatial knowledge about the image to further constrain the shifts. In this instance, the final images of NGC 7099 have resolutions of 0.35 arcsec from data taken in 1 arcsec seeing. The PAPA (Precision Analog Photon Address) camera was used to record data. It is subject to errors when imaging cluster cores in a large field of view. The origin of these errors is explained, and several ways to avoid them proposed. New software was created for the PAPA camera to properly take flat field images taken in a large field of view. Absolute photometry measurements of NGC 7099 made with the PAPA camera are accurate to 0.1 magnitude. Luminosity sampling errors dominate surface brightness profiles of the central few arcsec in a collapsed core cluster. These errors set limits on the ultimate spatial accuracy of surface brightness profiles.

Simple, Fast and Effective Correction for Irradiance Spatial Nonuniformity in Measurement of IVs of Large Area Cells at NREL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moriarty, Tom

The NREL cell measurement lab measures the IV parameters of cells of multiple sizes and configurations. A large contributing factor to errors and uncertainty in Jsc, Imax, Pmax and efficiency can be the irradiance spatial nonuniformity. Correcting for this nonuniformity through its precise and frequent measurement can be very time consuming. This paper explains a simple, fast and effective method based on bicubic interpolation for determining and correcting for spatial nonuniformity and verification of the method's efficacy.

Experimental investigation of leak detection using mobile distributed monitoring system

NASA Astrophysics Data System (ADS)

Chen, Jiang; Zheng, Junli; Xiong, Feng; Ge, Qi; Yan, Qixiang; Cheng, Fei

2018-01-01

The leak detection of rockfill dams is currently hindered by spatial and temporal randomness and wide monitoring range. The spatial resolution of fiber Bragg grating (FBG) temperature sensing technology is related to the distance between measuring points. As a result, the number of measuring points should be increased to ensure that the precise location of the leak is detected. However, this leads to a higher monitoring cost. Consequently, it is difficult to promote and apply this technology to effectively monitor rockfill dam leakage. In this paper, a practical mobile distributed monitoring system with dual-tubes is used by combining the FBG sensing system and hydrothermal cycling system. This dual-tube structure is composed of an outer polyethylene of raised temperature resistance heating pipe, an inner polytetrafluoroethylene tube, and a FBG sensor string, among which, the FBG sensor string can be dragged freely in the internal tube to change the position of the measuring points and improve the spatial resolution. In order to test the effectiveness of the system, the large-scale model test of concentrated leakage in 13 working conditions is carried out by identifying the location, quantity, and leakage rate of leakage passage. Based on Newton’s law of cooling, the leakage state is identified using the seepage identification index ζ v that was confirmed according to the cooling curve. Results suggested that the monitoring system shows high sensitivity and can improve the spatial resolution with limited measuring points, and thus better locate the leakage area. In addition, the seepage identification index ζ v correlated well with the leakage rate qualitatively.

Ultrasound line-by-line scanning method of spatial-temporal active cavitation mapping for high-intensity focused ultrasound.

PubMed

Ding, Ting; Zhang, Siyuan; Fu, Quanyou; Xu, Zhian; Wan, Mingxi

2014-01-01

This paper presented an ultrasound line-by-line scanning method of spatial-temporal active cavitation mapping applicable in a liquid or liquid filled tissue cavities exposed by high-intensity focused ultrasound (HIFU). Scattered signals from cavitation bubbles were obtained in a scan line immediately after one HIFU exposure, and then there was a waiting time of 2 s long enough to make the liquid back to the original state. As this pattern extended, an image was built up by sequentially measuring a series of such lines. The acquisition of the beamformed radiofrequency (RF) signals for a scan line was synchronized with HIFU exposure. The duration of HIFU exposure, as well as the delay of the interrogating pulse relative to the moment while HIFU was turned off, could vary from microseconds to seconds. The feasibility of this method was demonstrated in tap-water and a tap-water filled cavity in the tissue-mimicking gelatin-agar phantom as capable of observing temporal evolutions of cavitation bubble cloud with temporal resolution of several microseconds, lateral and axial resolution of 0.50 mm and 0.29 mm respectively. The dissolution process of cavitation bubble cloud and spatial distribution affected by cavitation previously generated were also investigated. Although the application is limited by the requirement for a gassy fluid (e.g. tap water, etc.) that allows replenishment of nuclei between HIFU exposures, the technique may be a useful tool in spatial-temporal cavitation mapping for HIFU with high precision and resolution, providing a reference for clinical therapy. Copyright © 2013 Elsevier B.V. All rights reserved.

Cokriging of Electromagnetic Induction Soil Electrical Conductivity Measurements and Soil Textural Properties to Demarcate Sub-field Management Zones for Precision Irrigation.

NASA Astrophysics Data System (ADS)

Ding, R.; Cruz, L.; Whitney, J.; Telenko, D.; Oware, E. K.

2017-12-01

There is the growing need for the development of efficient irrigation management practices due to increasing irrigation water scarcity as a result of growing population and changing climate. Soil texture primarily controls the water-holding capacity of soils, which determines the amount of irrigation water that will be available to the plant. However, while there are significant variabilities in the textural properties of the soil across a field, conventional irrigation practices ignore the underlying variability in the soil properties, resulting in over- or under-irrigation. Over-irrigation leaches plant nutrients beyond the root-zone leading to fertilizer, energy, and water wastages with dire environmental consequences. Under-irrigation, in contrast, causes water stress of the plant, thereby reducing plant quality and yield. The goal of this project is to leverage soil textural map of a field to create water management zones (MZs) to guide site-specific precision irrigation. There is increasing application of electromagnetic induction methods to rapidly and inexpensively map spatially continuous soil properties in terms of the apparent electrical conductivity (ECa) of the soil. ECa is a measure of the bulk soil properties, including soil texture, moisture, salinity, and cation exchange capacity, making an ECa map a pseudo-soil map. Data for the project were collected from a farm site at Eden, NY. The objective is to leverage high-resolution ECa map to predict spatially dense soil textural properties from limited measurements of soil texture. Thus, after performing ECa mapping, we conducted particle-size analysis of soil samples to determine the textural properties of soils at selected locations across the field. We cokriged the high-resolution ECa measurements with the sparse soil textural data to estimate a soil texture map for the field. We conducted irrigation experiments at selected locations to calibrate representative water-holding capacities of each estimated soil textural unit. Estimated soil units with similar water-holding characteristics were merged to create sub-field water MZs to guide precision irrigation of each MZ, instructed by each MZ's calibrated water-holding properties.

Neuromuscular control of the head in an isometric force reproduction task: comparison of whiplash subjects and healthy controls.

PubMed

Descarreaux, Martin; Mayrand, Nancy; Raymond, Jean

2007-01-01

A number of recent scientific publications suggest that patients suffering from whiplash-associated disorders (WADs) exhibit sensorimotor deficits in the control of head and neck movements. The main objective of the present study was to evaluate if subjects with WADs can produce isometric neck extension and flexion forces with precision, variability, and a mode of control similar to the values of healthy subjects. A control group study with repeated measures. Neck force production parameters and neuromuscular control were measured in 17 whiplash and 14 control subjects. The experimental group included subjects who had a history of persistent neck pain or disability after a motor vehicle accident. Pain levels were assessed on a standard 100-mm visual analog pain scale at the beginning and end of the experiment. Each whiplash subject completed the neck disability index and the short-form 36 health survey (SF-36) questionnaire before the experiment. All subjects were asked to exert flexion and extension forces against a fixed head harness. Kinetic variables included time to peak force, time to peak force variability, peak force variability, and absolute error in peak force. Surface electrodes were applied bilaterally over the sternocleidomastoideus and paraspinal muscles. Electromyography (EMG)-dependent variables included EMG burst duration and amplitude using numerical integrated techniques. The average time to peak force was significantly longer for whiplash subjects than for the healthy controls. A significant increase in peak force variability was also observed in the whiplash group, and no group differences were noted for absolute error. Heightened muscular activity was seen in both paraspinal muscles, even though it only reached statistical significance for the left paraspinal muscle. Our results show that the whiplash subjects involved in the study were able to produce isometric forces with spatial precision similar to healthy controls using a motor strategy in which the time to peak force is increased. This trade-off between spatial precision and time to peak force probably reflects an adaptation aimed at limiting pain and further injuries.

Liquid crystal templating as an approach to spatially and temporally organise soft matter.

PubMed

van der Asdonk, Pim; Kouwer, Paul H J

2017-10-02

Chemistry quickly moves from a molecular science to a systems science. This requires spatial and temporal control over the organisation of molecules and molecular assemblies. Whilst Nature almost by default (transiently) organises her components at multiple different length scales, scientists struggle to realise even relatively straightforward patterns. In the past decades, supramolecular chemistry has taught us the rules to precisely engineer molecular assembly at the nanometre scale. At higher length scales, however, we are bound to top-down nanotechnology techniques to realise order. For soft, biological matter, many of these top-down techniques come with serious limitations since the molecules generally show low susceptibilities to the applied stimuli. A new method is based on liquid crystal templating. In this hierarchical approach, a liquid crystalline host serves as the scaffold to order polymers or assemblies. Being a liquid crystal, the host material can be ordered at many different length scales and on top of that, is highly susceptible to many external stimuli, which can even be used to manipulate the liquid crystal organisation in time. As a result, we anticipate large control over the organisation of the materials inside the liquid crystalline host. Recently, liquid crystal templating was also realised in water. This suddenly makes this tool highly applicable to start organising more delicate biological materials or even small organisms. We review the scope and limitations of liquid crystal templating and look out to where the technique may lead us.

Improving Photometry and Stellar Signal Preservation with Pixel-Level Systematic Error Correction

NASA Technical Reports Server (NTRS)

Kolodzijczak, Jeffrey J.; Smith, Jeffrey C.; Jenkins, Jon M.

2013-01-01

The Kepler Mission has demonstrated that excellent stellar photometric performance can be achieved using apertures constructed from optimally selected CCD pixels. The clever methods used to correct for systematic errors, while very successful, still have some limitations in their ability to extract long-term trends in stellar flux. They also leave poorly correlated bias sources, such as drifting moiré pattern, uncorrected. We will illustrate several approaches where applying systematic error correction algorithms to the pixel time series, rather than the co-added raw flux time series, provide significant advantages. Examples include, spatially localized determination of time varying moiré pattern biases, greater sensitivity to radiation-induced pixel sensitivity drops (SPSDs), improved precision of co-trending basis vectors (CBV), and a means of distinguishing the stellar variability from co-trending terms even when they are correlated. For the last item, the approach enables physical interpretation of appropriately scaled coefficients derived in the fit of pixel time series to the CBV as linear combinations of various spatial derivatives of the pixel response function (PRF). We demonstrate that the residuals of a fit of soderived pixel coefficients to various PRF-related components can be deterministically interpreted in terms of physically meaningful quantities, such as the component of the stellar flux time series which is correlated with the CBV, as well as, relative pixel gain, proper motion and parallax. The approach also enables us to parameterize and assess the limiting factors in the uncertainties in these quantities.

Precise, Self-Limited Epitaxy of Ultrathin Organic Semiconductors and Heterojunctions Tailored by van der Waals Interactions.

PubMed

Wu, Bing; Zhao, Yinghe; Nan, Haiyan; Yang, Ziyi; Zhang, Yuhan; Zhao, Huijuan; He, Daowei; Jiang, Zonglin; Liu, Xiaolong; Li, Yun; Shi, Yi; Ni, Zhenhua; Wang, Jinlan; Xu, Jian-Bin; Wang, Xinran

2016-06-08

Precise assembly of semiconductor heterojunctions is the key to realize many optoelectronic devices. By exploiting the strong and tunable van der Waals (vdW) forces between graphene and organic small molecules, we demonstrate layer-by-layer epitaxy of ultrathin organic semiconductors and heterostructures with unprecedented precision with well-defined number of layers and self-limited characteristics. We further demonstrate organic p-n heterojunctions with molecularly flat interface, which exhibit excellent rectifying behavior and photovoltaic responses. The self-limited organic molecular beam epitaxy (SLOMBE) is generically applicable for many layered small-molecule semiconductors and may lead to advanced organic optoelectronic devices beyond bulk heterojunctions.

Systems and methods for knowledge discovery in spatial data

DOEpatents

Obradovic, Zoran; Fiez, Timothy E.; Vucetic, Slobodan; Lazarevic, Aleksandar; Pokrajac, Dragoljub; Hoskinson, Reed L.

2005-03-08

Systems and methods are provided for knowledge discovery in spatial data as well as to systems and methods for optimizing recipes used in spatial environments such as may be found in precision agriculture. A spatial data analysis and modeling module is provided which allows users to interactively and flexibly analyze and mine spatial data. The spatial data analysis and modeling module applies spatial data mining algorithms through a number of steps. The data loading and generation module obtains or generates spatial data and allows for basic partitioning. The inspection module provides basic statistical analysis. The preprocessing module smoothes and cleans the data and allows for basic manipulation of the data. The partitioning module provides for more advanced data partitioning. The prediction module applies regression and classification algorithms on the spatial data. The integration module enhances prediction methods by combining and integrating models. The recommendation module provides the user with site-specific recommendations as to how to optimize a recipe for a spatial environment such as a fertilizer recipe for an agricultural field.

AVIRIS Spectrometer Maps Total Water Vapor Column

NASA Technical Reports Server (NTRS)

Conel, James E.; Green, Robert O.; Carrere, Veronique; Margolis, Jack S.; Alley, Ronald E.; Vane, Gregg A.; Bruegge, Carol J.; Gary, Bruce L.

1992-01-01

Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) processes maps of vertical-column abundances of water vapor in atmosphere with good precision and spatial resolution. Maps provide information for meteorology, climatology, and agriculture.

Capacity and precision in an animal model of visual short-term memory.

PubMed

Lara, Antonio H; Wallis, Jonathan D

2012-03-14

Temporary storage of information in visual short-term memory (VSTM) is a key component of many complex cognitive abilities. However, it is highly limited in capacity. Understanding the neurophysiological nature of this capacity limit will require a valid animal model of VSTM. We used a multiple-item color change detection task to measure macaque monkeys' VSTM capacity. Subjects' performance deteriorated and reaction times increased as a function of the number of items in memory. Additionally, we measured the precision of the memory representations by varying the distance between sample and test colors. In trials with similar sample and test colors, subjects made more errors compared to trials with highly discriminable colors. We modeled the error distribution as a Gaussian function and used this to estimate the precision of VSTM representations. We found that as the number of items in memory increases the precision of the representations decreases dramatically. Additionally, we found that focusing attention on one of the objects increases the precision with which that object is stored and degrades the precision of the remaining. These results are in line with recent findings in human psychophysics and provide a solid foundation for understanding the neurophysiological nature of the capacity limit of VSTM.

Differentiation of Forebrain and Hippocampal Dopamine 1-Class Receptors, D1R and D5R, in Spatial Learning and Memory

PubMed Central

Sariñana, Joshua; Tonegawa, Susumu

2017-01-01

Activation of prefrontal cortical (PFC), striatal, and hippocampal dopamine 1-class receptors (D1R and D5R) is necessary for normal spatial information processing. Yet the precise role of the D1R versus the D5R in the aforementioned structures, and their specific contribution to the water-maze spatial learning task remains unknown. D1R- and D5R- specific in situ hybridization probes showed that forebrain restricted D1R and D5R KO mice (F-D1R/D5R KO) displayed D1R mRNA deletion in the medial (m)PFC, dorsal and ventral striatum, and the dentate gyrus (DG) of the hippocampus. D5R mRNA deletion was limited to the mPFC, the CA1 and DG hippocampal subregions. F-D1R/D5R KO mice were given water-maze training and displayed subtle spatial latency differences between genotypes and spatial memory deficits during both regular and reversal training. To differentiate forebrain D1R from D5R activation, forebrain restricted D1R KO (F-D1R KO) and D5R KO (F-D5R KO) mice were trained on the water-maze task. F-D1R KO animals exhibited escape latency deficits throughout regular and reversal training as well as spatial memory deficits during reversal training. F-D1R KO mice also showed perseverative behavior during the reversal spatial memory probe test. In contrast, F-D5R KO animals did not present observable deficits on the water-maze task. Because F-D1R KO mice showed water-maze deficits we tested the necessity of hippocampal D1R activation for spatial learning and memory. We trained DG restricted D1R KO (DG-D1R KO) mice on the water-maze task. DG-D1R KO mice did not present detectable spatial memory deficit, but did show subtle deficits during specific days of training. Our data provides evidence that forebrain D5R activation plays a unique role in spatial learning and memory in conjunction with D1R activation. Moreover, these data suggest that mPFC and striatal, but not DG D1R activation are essential for spatial learning and memory. PMID:26174222

Profiles of Motor Laterality in Young Athletes' Performance of Complex Movements: Merging the MOTORLAT and PATHoops Tools

PubMed Central

Castañer, Marta; Andueza, Juan; Hileno, Raúl; Puigarnau, Silvia; Prat, Queralt; Camerino, Oleguer

2018-01-01

Laterality is a key aspect of the analysis of basic and specific motor skills. It is relevant to sports because it involves motor laterality profiles beyond left-right preference and spatial orientation of the body. The aim of this study was to obtain the laterality profiles of young athletes, taking into account the synergies between the support and precision functions of limbs and body parts in the performance of complex motor skills. We applied two instruments: (a) MOTORLAT, a motor laterality inventory comprising 30 items of basic, specific, and combined motor skills, and (b) the Precision and Agility Tapping over Hoops (PATHoops) task, in which participants had to perform a path by stepping in each of 14 hoops arranged on the floor, allowing the observation of their feet, left-right preference and spatial orientation. A total of 96 young athletes performed the PATHoops task and the 30 MOTORLAT items, allowing us to obtain data about limb dominance and spatial orientation of the body in the performance of complex motor skills. Laterality profiles were obtained by means of a cluster analysis and a correlational analysis and a contingency analysis were applied between the motor skills and spatial orientation actions performed. The results obtained using MOTORLAT show that the combined motor skills criterion (for example, turning while jumping) differentiates athletes' uses of laterality, showing a clear tendency toward mixed laterality profiles in the performance of complex movements. In the PATHoops task, the best spatial orientation strategy was “same way” (same foot and spatial wing) followed by “opposite way” (opposite foot and spatial wing), in keeping with the research assumption that actions unfolding in a horizontal direction in front of an observer's eyes are common in a variety of sports. PMID:29930527

Challenges and regulatory considerations in the acoustic measurement of high-frequency (>20 MHz) ultrasound.

PubMed

Nagle, Samuel M; Sundar, Guru; Schafer, Mark E; Harris, Gerald R; Vaezy, Shahram; Gessert, James M; Howard, Samuel M; Moore, Mary K; Eaton, Richard M

2013-11-01

This article examines the challenges associated with making acoustic output measurements at high ultrasound frequencies (>20 MHz) in the context of regulatory considerations contained in the US Food and Drug Administration industry guidance document for diagnostic ultrasound devices. Error sources in the acoustic measurement, including hydrophone calibration and spatial averaging, nonlinear distortion, and mechanical alignment, are evaluated, and the limitations of currently available acoustic measurement instruments are discussed. An uncertainty analysis of acoustic intensity and power measurements is presented, and an example uncertainty calculation is done on a hypothetical 30-MHz high-frequency ultrasound system. This analysis concludes that the estimated measurement uncertainty of the acoustic intensity is +73%/-86%, and the uncertainty in the mechanical index is +37%/-43%. These values exceed the respective levels in the Food and Drug Administration guidance document of 30% and 15%, respectively, which are more representative of the measurement uncertainty associated with characterizing lower-frequency ultrasound systems. Recommendations made for minimizing the measurement uncertainty include implementing a mechanical positioning system that has sufficient repeatability and precision, reconstructing the time-pressure waveform via deconvolution using the hydrophone frequency response, and correcting for hydrophone spatial averaging.

Assessment of a vertical high-resolution distributed-temperature-sensing system in a shallow thermohaline environment

NASA Astrophysics Data System (ADS)

Suárez, F.; Aravena, J. E.; Hausner, M. B.; Childress, A. E.; Tyler, S. W.

2011-01-01

In shallow thermohaline-driven lakes it is important to measure temperature on fine spatial and temporal scales to detect stratification or different hydrodynamic regimes. Raman spectra distributed temperature sensing (DTS) is an approach available to provide high spatial and temporal temperature resolution. A vertical high-resolution DTS system was constructed to overcome the problems of typical methods used in the past, i.e., without disturbing the water column, and with resistance to corrosive environments. This system monitors the temperature profile each 1.1 cm vertically and in time averages as small as 10 s. Temperature resolution as low as 0.035 °C is obtained when the data are collected at 5-min intervals. The vertical high-resolution DTS system is used to monitor the thermal behavior of a salt-gradient solar pond, which is an engineered shallow thermohaline system that allows collection and storage of solar energy for a long period of time. This paper describes a method to quantitatively assess accuracy, precision and other limitations of DTS systems to fully utilize the capacity of this technology. It also presents, for the first time, a method to manually calibrate temperatures along the optical fiber.

In vivo cardiac nano-imaging: A new technology for high-precision analyses of sarcomere dynamics in the heart.

PubMed

Shimozawa, Togo; Hirokawa, Erisa; Kobirumaki-Shimozawa, Fuyu; Oyama, Kotaro; Shintani, Seine A; Terui, Takako; Kushida, Yasuharu; Tsukamoto, Seiichi; Fujii, Teruyuki; Ishiwata, Shin'ichi; Fukuda, Norio

2017-03-01

The cardiac pump function is a result of a rise in intracellular Ca 2+ and the ensuing sarcomeric contractions [i.e., excitation-contraction (EC) coupling] in myocytes in various locations of the heart. In order to elucidate the heart's mechanical properties under various settings, cardiac imaging is widely performed in today's clinical as well as experimental cardiology by using echocardiogram, magnetic resonance imaging and computed tomography. However, because these common techniques detect local myocardial movements at a spatial resolution of ∼100 μm, our knowledge on the sub-cellular mechanisms of the physiology and pathophysiology of the heart in vivo is limited. This is because (1) EC coupling occurs in the μm partition in a myocyte and (2) cardiac sarcomeres generate active force upon a length change of ∼100 nm on a beat-to-beat basis. Recent advances in optical technologies have enabled measurements of intracellular Ca 2+ dynamics and sarcomere length displacements at high spatial and temporal resolution in the beating heart of living rodents. Future studies with these technologies are warranted to open a new era in cardiac research. Copyright © 2016 Elsevier Ltd. All rights reserved.

Recent progress in distributed fiber optic sensors.

PubMed

Bao, Xiaoyi; Chen, Liang

2012-01-01

Rayleigh, Brillouin and Raman scatterings in fibers result from the interaction of photons with local material characteristic features like density, temperature and strain. For example an acoustic/mechanical wave generates a dynamic density variation; such a variation may be affected by local temperature, strain, vibration and birefringence. By detecting changes in the amplitude, frequency and phase of light scattered along a fiber, one can realize a distributed fiber sensor for measuring localized temperature, strain, vibration and birefringence over lengths ranging from meters to one hundred kilometers. Such a measurement can be made in the time domain or frequency domain to resolve location information. With coherent detection of the scattered light one can observe changes in birefringence and beat length for fibers and devices. The progress on state of the art technology for sensing performance, in terms of spatial resolution and limitations on sensing length is reviewed. These distributed sensors can be used for disaster prevention in the civil structural monitoring of pipelines, bridges, dams and railroads. A sensor with centimeter spatial resolution and high precision measurement of temperature, strain, vibration and birefringence can find applications in aerospace smart structures, material processing, and the characterization of optical materials and devices.

The anisotropic Wilson gauge action

NASA Astrophysics Data System (ADS)

Klassen, Timothy R.

1998-11-01

Anisotropic lattices, with a temporal lattice spacing smaller than the spatial one, allow precision Monte Carlo calculations of problems that are difficult to study otherwise: heavy quarks, glueballs, hybrids, and high temperature thermodynamics, for example. We here perform the first step required for such studies with the (quenched) Wilson gauge action, namely, the determination of the renormalized anisotropy Ξ as a function of the bare anisotropy Ξ0 and the coupling. By, essentially, comparing the finite-volume heavy quark potential where the quarks are separated along a spatial direction with that where they are separated along the time direction, we determine the relation between Ξ and Ξ0 to a fraction of 1% for weak and to 1% for strong coupling. We present a simple parameterization of this relation for 1 ⩽ Ξ ⩽ 6 and 5.5 ⩽ β ⩽ ∞, which incorporates the known one-loop result and reproduces our non-perturbative determinations within errors. Besides solving the problem of how to choose the bare anisotropies if one wants to take the continuum limit at fixed renormalized anisotropy, this parameterization also yields accurate estimates of the derivative {∂Ξ 0}/{∂Ξ} needed in thermodynamic studies.

Laser capture microdissection: Big data from small samples

PubMed Central

Datta, Soma; Malhotra, Lavina; Dickerson, Ryan; Chaffee, Scott; Sen, Chandan K.; Roy, Sashwati

2015-01-01

Any tissue is made up of a heterogeneous mix of spatially distributed cell types. In response to any (patho) physiological cue, responses of each cell type in any given tissue may be unique and cannot be homogenized across cell-types and spatial co-ordinates. For example, in response to myocardial infarction, on one hand myocytes and fibroblasts of the heart tissue respond differently. On the other hand, myocytes in the infarct core respond differently compared to those in the peri-infarct zone. Therefore, isolation of pure targeted cells is an important and essential step for the molecular analysis of cells involved say in the progression of disease. Laser capture microdissection (LCM) is powerful to obtain a pure targeted cell subgroup, or even a single cell, quickly and precisely under the microscope, successfully tackling the problem of tissue heterogeneity in molecular analysis. This review presents an overview of LCM technology, the principles, advantages and limitations and its down-stream applications in the fields of proteomics, genomics and transcriptomics. With powerful technologies and appropriate applications, this technique provides unprecedented insights into cell biology from cells grown in their natural tissue habitat as opposed to those cultured in artificial petri dish conditions. PMID:25892148

Laser capture microdissection: Big data from small samples.

PubMed

Datta, Soma; Malhotra, Lavina; Dickerson, Ryan; Chaffee, Scott; Sen, Chandan K; Roy, Sashwati

2015-11-01

Any tissue is made up of a heterogeneous mix of spatially distributed cell types. In response to any (patho) physiological cue, responses of each cell type in any given tissue may be unique and cannot be homogenized across cell-types and spatial co-ordinates. For example, in response to myocardial infarction, on one hand myocytes and fibroblasts of the heart tissue respond differently. On the other hand, myocytes in the infarct core respond differently compared to those in the peri-infarct zone. Therefore, isolation of pure targeted cells is an important and essential step for the molecular analysis of cells involved in the progression of disease. Laser capture microdissection (LCM) is powerful to obtain a pure targeted cell subgroup, or even a single cell, quickly and precisely under the microscope, successfully tackling the problem of tissue heterogeneity in molecular analysis. This review presents an overview of LCM technology, the principles, advantages and limitations and its down-stream applications in the fields of proteomics, genomics and transcriptomics. With powerful technologies and appropriate applications, this technique provides unprecedented insights into cell biology from cells grown in their natural tissue habitat as opposed to those cultured in artificial petri dish conditions.

Recent Progress in Distributed Fiber Optic Sensors

PubMed Central

Bao, Xiaoyi; Chen, Liang

2012-01-01

Rayleigh, Brillouin and Raman scatterings in fibers result from the interaction of photons with local material characteristic features like density, temperature and strain. For example an acoustic/mechanical wave generates a dynamic density variation; such a variation may be affected by local temperature, strain, vibration and birefringence. By detecting changes in the amplitude, frequency and phase of light scattered along a fiber, one can realize a distributed fiber sensor for measuring localized temperature, strain, vibration and birefringence over lengths ranging from meters to one hundred kilometers. Such a measurement can be made in the time domain or frequency domain to resolve location information. With coherent detection of the scattered light one can observe changes in birefringence and beat length for fibers and devices. The progress on state of the art technology for sensing performance, in terms of spatial resolution and limitations on sensing length is reviewed. These distributed sensors can be used for disaster prevention in the civil structural monitoring of pipelines, bridges, dams and railroads. A sensor with centimeter spatial resolution and high precision measurement of temperature, strain, vibration and birefringence can find applications in aerospace smart structures, material processing, and the characterization of optical materials and devices. PMID:23012508

Generalized Landau Equation for a System with a Self-Consistent Mean Field - Derivation from an N-Particle Liouville Equation

NASA Astrophysics Data System (ADS)

Kandrup, H.

1981-02-01

Assume that the evolution of a system is determined by an N-particle Liouville equation. Suppose, moreover, that the particles which compose the system interact via a long range force like gravity so that the system will be spatially inhomogeneous. In this case, the mean force acting upon a test particle does not vanish, so that one wishes to isolate a self-consistent mean field and distinguish its "systematic" effects from the effects of "fluctuations." This is done here. The time-dependent projection operator formalism of Willis and Picard is used to obtain an exact equation for the time evolution of an appropriately defined one-particle probability density. If one implements the assumption that the "fluctuation" time scale is much shorter than both the relaxation and dynamical time scales, this exact equation can be approximated as a closed Markovian equation. In the limiting case of spatial homogeneity, one recovers precisely the standard Landau equation, which is customarily derived by a stochastic binary-encounter argument. This equation is contrasted with the standard heuristic equation for a mean field theory, as formulated for a Newtonian r-1 gravitational potential in stellar dynamics.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gundlach-Graham, Alexander W.; Dennis, Elise; Ray, Steven J.

Here we describe the first combination of a Distance-of-Flight Mass Spectrometry (DOFMS) instrument and an inductively coupled plasma (ICP) ion source. DOFMS is a velocity-based MS technique in which ions of a range of mass-to-charge (m/z) values are detected simultaneously along the length of a spatially selective detector. As a relative of time-of-flight (TOF) MS, DOFMS leverages benefits fromboth TOFMS and spatially dispersive MS. The simultaneous detection of groups of m/z values improves dynamic range by spreading ion signal across many detector elements and reduces correlated noise by signal ratioing. To ascertain the performance characteristics of the ICP-DOFMS instrument, wemore » have employed a microchannel-plate/phosphor detection assembly with a scientific CCD to capture images of the phosphor plate. With this simple (and commercially available) detection scheme, elemental detection limits from 2–30 ng L*1 and a linear dynamic range of 5 orders of magnitude (10–106 ng L1) have been demonstrated. Additionally, a competitive isotope-ratio precision of 0.1% RSD has been achieved with only a 6 s signal integration period. In addition to first figures of merit, this paper outlines technical considerations for the design of the ICP-DOFMS.« less

Stereo Refractive Imaging of Breaking Free-Surface Waves in the Surf Zone

NASA Astrophysics Data System (ADS)

Mandel, Tracy; Weitzman, Joel; Koseff, Jeffrey; Environmental Fluid Mechanics Laboratory Team

2014-11-01

Ocean waves drive the evolution of coastlines across the globe. Wave breaking suspends sediments, while wave run-up, run-down, and the undertow transport this sediment across the shore. Complex bathymetric features and natural biotic communities can influence all of these dynamics, and provide protection against erosion and flooding. However, our knowledge of the exact mechanisms by which this occurs, and how they can be modeled and parameterized, is limited. We have conducted a series of controlled laboratory experiments with the goal of elucidating these details. These have focused on quantifying the spatially-varying characteristics of breaking waves and developing more accurate techniques for measuring and predicting wave setup, setdown, and run-up. Using dynamic refraction stereo imaging, data on free-surface slope and height can be obtained over an entire plane. Wave evolution is thus obtained with high spatial precision. These surface features are compared with measures of instantaneous turbulence and mean currents within the water column. We then use this newly-developed ability to resolve three-dimensional surface features over a canopy of seagrass mimics, in order to validate theoretical formulations of wave-vegetation interactions in the surf zone.

The macro-structural variability of the human neocortex.

PubMed

Kruggel, Frithjof

2018-05-15

The human neocortex shows a considerable individual structural variability. While primary gyri and sulci are found in all normally developed brains and bear clear-cut gross structural descriptions, secondary structures are highly variable and not present in all brains. The blend of common and individual structures poses challenges when comparing structural and functional results from quantitative neuroimaging studies across individuals, and sets limits on the precision of location information much above the spatial resolution of current neuroimaging methods. This work aimed at quantifying structural variability on the neocortex, and at assessing the spatial relationship between regions common to all brains and their individual structural variants. Based on structural MRI data provided as the "900 Subjects Release" of the Human Connectome Project, a data-driven analytic approach was employed here from which the definition of seven cortical "communities" emerged. Apparently, these communities comprise common regions of structural features, while the individual variability is confined within a community. Similarities between the community structure and the state of the brain development at gestation week 32 lead suggest that communities are segregated early. Subdividing the neocortex into communities is suggested as anatomically more meaningful than the traditional lobar structure. Copyright © 2018 Elsevier Inc. All rights reserved.

Experimental Estimation of Entanglement at the Quantum Limit

NASA Astrophysics Data System (ADS)

Brida, Giorgio; Degiovanni, Ivo Pietro; Florio, Angela; Genovese, Marco; Giorda, Paolo; Meda, Alice; Paris, Matteo G. A.; Shurupov, Alexander

2010-03-01

Entanglement is the central resource of quantum information processing and the precise characterization of entangled states is a crucial issue for the development of quantum technologies. This leads to the necessity of a precise, experimental feasible measure of entanglement. Nevertheless, such measurements are limited both from experimental uncertainties and intrinsic quantum bounds. Here we present an experiment where the amount of entanglement of a family of two-qubit mixed photon states is estimated with the ultimate precision allowed by quantum mechanics.

Influence of landscape-scale factors in limiting brook trout populations in Pennsylvania streams

USGS Publications Warehouse

Kocovsky, P.M.; Carline, R.F.

2006-01-01

Landscapes influence the capacity of streams to produce trout through their effect on water chemistry and other factors at the reach scale. Trout abundance also fluctuates over time; thus, to thoroughly understand how spatial factors at landscape scales affect trout populations, one must assess the changes in populations over time to provide a context for interpreting the importance of spatial factors. We used data from the Pennsylvania Fish and Boat Commission's fisheries management database to investigate spatial factors that affect the capacity of streams to support brook trout Salvelinus fontinalis and to provide models useful for their management. We assessed the relative importance of spatial and temporal variation by calculating variance components and comparing relative standard errors for spatial and temporal variation. We used binary logistic regression to predict the presence of harvestable-length brook trout and multiple linear regression to assess the mechanistic links between landscapes and trout populations and to predict population density. The variance in trout density among streams was equal to or greater than the temporal variation for several streams, indicating that differences among sites affect population density. Logistic regression models correctly predicted the absence of harvestable-length brook trout in 60% of validation samples. The r 2-value for the linear regression model predicting density was 0.3, indicating low predictive ability. Both logistic and linear regression models supported buffering capacity against acid episodes as an important mechanistic link between landscapes and trout populations. Although our models fail to predict trout densities precisely, their success at elucidating the mechanistic links between landscapes and trout populations, in concert with the importance of spatial variation, increases our understanding of factors affecting brook trout abundance and will help managers and private groups to protect and enhance populations of wild brook trout. ?? Copyright by the American Fisheries Society 2006.

Geostatistical uncertainty of assessing air quality using high-spatial-resolution lichen data: A health study in the urban area of Sines, Portugal.

PubMed

Ribeiro, Manuel C; Pinho, P; Branquinho, C; Llop, Esteve; Pereira, Maria J

2016-08-15

In most studies correlating health outcomes with air pollution, personal exposure assignments are based on measurements collected at air-quality monitoring stations not coinciding with health data locations. In such cases, interpolators are needed to predict air quality in unsampled locations and to assign personal exposures. Moreover, a measure of the spatial uncertainty of exposures should be incorporated, especially in urban areas where concentrations vary at short distances due to changes in land use and pollution intensity. These studies are limited by the lack of literature comparing exposure uncertainty derived from distinct spatial interpolators. Here, we addressed these issues with two interpolation methods: regression Kriging (RK) and ordinary Kriging (OK). These methods were used to generate air-quality simulations with a geostatistical algorithm. For each method, the geostatistical uncertainty was drawn from generalized linear model (GLM) analysis. We analyzed the association between air quality and birth weight. Personal health data (n=227) and exposure data were collected in Sines (Portugal) during 2007-2010. Because air-quality monitoring stations in the city do not offer high-spatial-resolution measurements (n=1), we used lichen data as an ecological indicator of air quality (n=83). We found no significant difference in the fit of GLMs with any of the geostatistical methods. With RK, however, the models tended to fit better more often and worse less often. Moreover, the geostatistical uncertainty results showed a marginally higher mean and precision with RK. Combined with lichen data and land-use data of high spatial resolution, RK is a more effective geostatistical method for relating health outcomes with air quality in urban areas. This is particularly important in small cities, which generally do not have expensive air-quality monitoring stations with high spatial resolution. Further, alternative ways of linking human activities with their environment are needed to improve human well-being. Copyright © 2016 Elsevier B.V. All rights reserved.

Communicating Geographical Risks in Crisis Management: The Need for Research.

PubMed

French, Simon; Argyris, Nikolaos; Haywood, Stephanie M; Hort, Matthew C; Smith, Jim Q

2017-10-23

In any crisis, there is a great deal of uncertainty, often geographical uncertainty or, more precisely, spatiotemporal uncertainty. Examples include the spread of contamination from an industrial accident, drifting volcanic ash, and the path of a hurricane. Estimating spatiotemporal probabilities is usually a difficult task, but that is not our primary concern. Rather, we ask how analysts can communicate spatiotemporal uncertainty to those handling the crisis. We comment on the somewhat limited literature on the representation of spatial uncertainty on maps. We note that many cognitive issues arise and that the potential for confusion is high. We note that in the early stages of handling a crisis, the uncertainties involved may be deep, i.e., difficult or impossible to quantify in the time available. In such circumstance, we suggest the idea of presenting multiple scenarios. © 2017 Society for Risk Analysis.

Magnetorheological Finishing for Imprinting Continuous Phase Plate Structure onto Optical Surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menapace, J A; Dixit, S N; Genin, F Y

2004-01-05

Magnetorheological finishing (MRF) techniques have been developed to manufacture continuous phase plates (CPP's) and custom phase corrective structures on polished fused silica surfaces. These phase structures are important for laser applications requiring precise manipulation and control of beam-shape, energy distribution, and wavefront profile. The MRF's unique deterministic-sub-aperture polishing characteristics make it possible to imprint complex topographical information onto optical surfaces at spatial scale-lengths approaching 1 mm. In this study, we present the results of experiments and model calculations that explore imprinting two-dimensional sinusoidal structures. Results show how the MRF removal function impacts and limits imprint fidelity and what must bemore » done to arrive at a high quality surface. We also present several examples of this imprinting technology for fabrication of phase correction plates and CPPs for use at high fluences.« less

Controlled Release from Recombinant Polymers

PubMed Central

Price, Robert; Poursaid, Azadeh; Ghandehari, Hamidreza

2014-01-01

Recombinant polymers provide a high degree of molecular definition for correlating structure with function in controlled release. The wide array of amino acids available as building blocks for these materials lend many advantages including biorecognition, biodegradability, potential biocompatibility, and control over mechanical properties among other attributes. Genetic engineering and DNA manipulation techniques enable the optimization of structure for precise control over spatial and temporal release. Unlike the majority of chemical synthetic strategies used, recombinant DNA technology has allowed for the production of monodisperse polymers with specifically defined sequences. Several classes of recombinant polymers have been used for controlled drug delivery. These include, but are not limited to, elastin-like, silk-like, and silk-elastinlike proteins, as well as emerging cationic polymers for gene delivery. In this article, progress and prospects of recombinant polymers used in controlled release will be reviewed. PMID:24956486

Bioprinting technology and its applications.

PubMed

Seol, Young-Joon; Kang, Hyun-Wook; Lee, Sang Jin; Atala, Anthony; Yoo, James J

2014-09-01

Bioprinting technology has emerged as a powerful tool for building tissue and organ structures in the field of tissue engineering. This technology allows precise placement of cells, biomaterials and biomolecules in spatially predefined locations within confined three-dimensional (3D) structures. Various bioprinting technologies have been developed and utilized for applications in life sciences, ranging from studying cellular mechanisms to constructing tissues and organs for implantation, including heart valve, myocardial tissue, trachea and blood vessels. In this article, we introduce the general principles and limitations of the most widely used bioprinting technologies, including jetting- and extrusion-based systems. Application-based research focused on tissue regeneration is presented, as well as the current challenges that hamper clinical utility of bioprinting technology. © The Author 2014. Published by Oxford University Press on behalf of the European Association for Cardio-Thoracic Surgery. All rights reserved.

Measuring magnetic field vector by stimulated Raman transitions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Wenli; Wei, Rong, E-mail: weirong@siom.ac.cn; Lin, Jinda

2016-03-21

We present a method for measuring the magnetic field vector in an atomic fountain by probing the line strength of stimulated Raman transitions. The relative line strength for a Λ-type level system with an existing magnetic field is theoretically analyzed. The magnetic field vector measured by our proposed method is consistent well with that by the traditional bias magnetic field method with an axial resolution of 6.1 mrad and a radial resolution of 0.16 rad. Dependences of the Raman transitions on laser polarization schemes are also analyzed. Our method offers the potential advantages for magnetic field measurement without requiring additional bias fields,more » beyond the limitation of magnetic field intensity, and extending the spatial measurement range. The proposed method can be widely used for measuring magnetic field vector in other precision measurement fields.« less

Measuring large aspherics using a commercially available 3D-coordinate measuring machine

NASA Astrophysics Data System (ADS)

Otto, Wolfgang; Matthes, Axel; Schiehle, Heinz

2000-07-01

A CNC-controlled precision measuring machine is a very powerful tool in the optical shop not only to determine the surface figure, but also to qualify the radius of curvature and conic constant of aspherics. We used a commercially available 3D-coordinate measuring machine (CMM, ZEISS UPMC 850 CARAT S-ACC) to measure the shape of the GEMINI 1-m convex secondary mirrors at different lapping and polishing stages. To determine the measuring accuracy we compared the mechanical measurements with the results achieved by means of an interferometrical test setup. The data obtained in an early stage of polishing were evaluated in Zernike polynomials which show a very good agreement. The deviation concerning long wave rotational symmetrical errors was 20 nm rms, whereas the accuracy measuring of mid spatial frequency deviations was limited to about 100 nm rms.

Straight as an arrow: humpback whales swim constant course tracks during long-distance migration

PubMed Central

Horton, Travis W.; Holdaway, Richard N.; Zerbini, Alexandre N.; Hauser, Nan; Garrigue, Claire; Andriolo, Artur; Clapham, Phillip J.

2011-01-01

Humpback whale seasonal migrations, spanning greater than 6500 km of open ocean, demonstrate remarkable navigational precision despite following spatially and temporally distinct migration routes. Satellite-monitored radio tag-derived humpback whale migration tracks in both the South Atlantic and South Pacific include constant course segments of greater than 200 km, each spanning several days of continuous movement. The whales studied here maintain these directed movements, often with better than 1° precision, despite the effects of variable sea-surface currents. Such remarkable directional precision is difficult to explain by established models of directional orientation, suggesting that alternative compass mechanisms should be explored. PMID:21508023

Straight as an arrow: humpback whales swim constant course tracks during long-distance migration.

PubMed

Horton, Travis W; Holdaway, Richard N; Zerbini, Alexandre N; Hauser, Nan; Garrigue, Claire; Andriolo, Artur; Clapham, Phillip J

2011-10-23

Humpback whale seasonal migrations, spanning greater than 6500 km of open ocean, demonstrate remarkable navigational precision despite following spatially and temporally distinct migration routes. Satellite-monitored radio tag-derived humpback whale migration tracks in both the South Atlantic and South Pacific include constant course segments of greater than 200 km, each spanning several days of continuous movement. The whales studied here maintain these directed movements, often with better than 1° precision, despite the effects of variable sea-surface currents. Such remarkable directional precision is difficult to explain by established models of directional orientation, suggesting that alternative compass mechanisms should be explored.

Super-resolution mapping of scaffold nucleoporins in the nuclear pore complex.

PubMed

Ma, Jiong; Kelich, Joseph M; Junod, Samuel L; Yang, Weidong

2017-04-01

The nuclear pore complex (NPC), composed of ∼30 different nucleoporins (Nups), is one of the largest supramolecular structures in eukaryotic cells. Its octagonal ring scaffold perforates the nuclear envelope and features a unique molecular machinery that regulates nucleocytoplasmic transport. However, the precise copy number and the spatial location of each Nup in the native NPC remain obscure due to the inherent difficulty of counting and localizing proteins inside of the sub-micrometer supramolecular complex. Here, we combined super-resolution single-point edge-excitation subdiffraction (SPEED) microscopy and nanobody-specific labeling to reveal the spatial distribution of scaffold Nups within three separate layers in the native NPC with a precision of ∼3 nm. Our data reveal both the radial and axial spatial distributions for Pom121, Nup37 and Nup35 and provide evidence for their copy numbers of 8, 32 and 16, respectively, per NPC. This approach can help pave the path for mapping the entirety of Nups in native NPCs and also other structural components of macromolecular complexes. © 2017. Published by The Company of Biologists Ltd.

Super-resolution mapping of scaffold nucleoporins in the nuclear pore complex

PubMed Central

Ma, Jiong; Kelich, Joseph M.; Junod, Samuel L.

2017-01-01

ABSTRACT The nuclear pore complex (NPC), composed of ∼30 different nucleoporins (Nups), is one of the largest supramolecular structures in eukaryotic cells. Its octagonal ring scaffold perforates the nuclear envelope and features a unique molecular machinery that regulates nucleocytoplasmic transport. However, the precise copy number and the spatial location of each Nup in the native NPC remain obscure due to the inherent difficulty of counting and localizing proteins inside of the sub-micrometer supramolecular complex. Here, we combined super-resolution single-point edge-excitation subdiffraction (SPEED) microscopy and nanobody-specific labeling to reveal the spatial distribution of scaffold Nups within three separate layers in the native NPC with a precision of ∼3 nm. Our data reveal both the radial and axial spatial distributions for Pom121, Nup37 and Nup35 and provide evidence for their copy numbers of 8, 32 and 16, respectively, per NPC. This approach can help pave the path for mapping the entirety of Nups in native NPCs and also other structural components of macromolecular complexes. PMID:28202688

Integration of microplasma and microfluidic technologies for localised microchannel surface modification

NASA Astrophysics Data System (ADS)

Szili, Endre J.; Al-Bataineh, Sameer A.; Priest, Craig; Gruner, Philipp J.; Ruschitzka, Paul; Bradley, James W.; Ralston, John; Steele, David A.; Short, Robert D.

2011-12-01

In this paper we describe the spatial surface chemical modification of bonded microchannels through the integration of microplasmas into a microfluidic chip (MMC). The composite MMC comprises an array of precisely aligned electrodes surrounding the gas/fluid microchannel. Pairs of electrodes are used to locally ignite microplasmas inside the microchannel. Microplasmas, comprising geometrically confined microscopic electrically-driven gas discharges, are used to spatially functionalise the walls of the microchannels with proteins and enzymes down to scale lengths of 300 μm inside 50 μm-wide microchannels. Microchannels in poly(dimethylsiloxane) (PDMS) or glass were used in this study. Protein specifically adsorbed on to the regions inside the PDMS microchannel that were directly exposed to the microplasma. Glass microchannels required pre-functionalisation to enable the spatial patterning of protein. Firstly, the microchannel wall was functionalised with a protein adhesion layer, 3-aminopropyl-triethoxysilane (APTES), and secondly, a protein blocking agent (bovine serum albumin, BSA) was adsorbed onto APTES. The functionalised microchannel wall was then treated with an array of spatially localised microplasmas that reduced the blocking capability of the BSA in the region that had been exposed to the plasma. This enabled the functionalisation of the microchannel with an array of spatially separated protein. As an alternative we demonstrated the feasibility of depositing functional thin films inside the MMC by spatially plasma depositing acrylic acid and 1,7-octadiene within the microchannel. This new MMC technology enables the surface chemistry of microchannels to be engineered with precision, which is expected to broaden the scope of lab-on-a-chip type applications.

A precise extragalactic test of General Relativity.

PubMed

Collett, Thomas E; Oldham, Lindsay J; Smith, Russell J; Auger, Matthew W; Westfall, Kyle B; Bacon, David; Nichol, Robert C; Masters, Karen L; Koyama, Kazuya; van den Bosch, Remco

2018-06-22

Einstein's theory of gravity, General Relativity, has been precisely tested on Solar System scales, but the long-range nature of gravity is still poorly constrained. The nearby strong gravitational lens ESO 325-G004 provides a laboratory to probe the weak-field regime of gravity and measure the spatial curvature generated per unit mass, γ. By reconstructing the observed light profile of the lensed arcs and the observed spatially resolved stellar kinematics with a single self-consistent model, we conclude that γ = 0.97 ± 0.09 at 68% confidence. Our result is consistent with the prediction of 1 from General Relativity and provides a strong extragalactic constraint on the weak-field metric of gravity. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Xuan; Deeb, Claire; Kostcheev, Sergei

We report a self-developing anisotropic gold/polymer hybrid nanosystem that precisely places dye molecules at the plasmonic hotspot of metal nanostructures for sensing and photonics applications. Unlike conventional molecule-particle configurations, the anisotropic hybrid nanosystem (AHN) introduces an anisotropic spatial distribution of dye-containing active medium. This allows us to precisely overlap the near-field spatial distribution with the active medium and rule out the contribution from the background molecules. This overlap effect selectively highlights the optical response of the molecules of interest, i.e., molecules located at the hotspots. Our AHN consists of gold nanodimers whose gaps have been filled with methylene blue molecules.more » They have been studied by plasmon-enhanced Raman spectroscopy as a probing tool. The AHN opens new doors not only for fundamental studies and photonics applications of molecule-particle interactions, but also for molecular trapping methods at the nanoscale.« less

U-Pb SHRIMP dating of uraniferous opals

USGS Publications Warehouse

Nemchin, A.A.; Neymark, L.A.; Simons, S.L.

2006-01-01

U-Pb and U-series analyses of four U-rich opal samples using sensitive high-resolution ion microprobe (SHRIMP) demonstrate the potential of this technique for the dating of opals with ages ranging from several tens of thousand years to millions of years. The major advantages of the technique, compared to the conventional thermal ionisation mass spectrometry (TIMS), are the high spatial resolution (???20 ??m), the ability to analyse in situ all isotopes required to determine both U-Pb and U-series ages, and a relatively short analysis time which allows obtaining a growth rate of opal as a result of a single SHRIMP session. There are two major limitations to this method, determined by both current level of development of ion probes and understanding of ion sputtering processes. First, sufficient secondary ion beam intensities can only be obtained for opal samples with U concentrations in excess of ???20 ??g/g. However, this restriction still permits dating of a large variety of opals. Second, U-Pb ratios in all analyses drifted with time and were only weakly correlated with changes in other ratios (such as U/UO). This drift, which is difficult to correct for, remains the main factor currently limiting the precision and accuracy of the U-Pb SHRIMP opal ages. Nevertheless, an assumption of similar behaviour of standard and unknown opals under similar analytical conditions allowed successful determination of ages with precisions of ???10% for the samples investigated in this study. SHRIMP-based U-series and U-Pb ages are consistent with TIMS dating results of the same materials and known geological timeframes. ?? 2005 Elsevier B.V. All rights reserved.

Fast fMRI can detect oscillatory neural activity in humans.

PubMed

Lewis, Laura D; Setsompop, Kawin; Rosen, Bruce R; Polimeni, Jonathan R

2016-10-25

Oscillatory neural dynamics play an important role in the coordination of large-scale brain networks. High-level cognitive processes depend on dynamics evolving over hundreds of milliseconds, so measuring neural activity in this frequency range is important for cognitive neuroscience. However, current noninvasive neuroimaging methods are not able to precisely localize oscillatory neural activity above 0.2 Hz. Electroencephalography and magnetoencephalography have limited spatial resolution, whereas fMRI has limited temporal resolution because it measures vascular responses rather than directly recording neural activity. We hypothesized that the recent development of fast fMRI techniques, combined with the extra sensitivity afforded by ultra-high-field systems, could enable precise localization of neural oscillations. We tested whether fMRI can detect neural oscillations using human visual cortex as a model system. We detected small oscillatory fMRI signals in response to stimuli oscillating at up to 0.75 Hz within single scan sessions, and these responses were an order of magnitude larger than predicted by canonical linear models. Simultaneous EEG-fMRI and simulations based on a biophysical model of the hemodynamic response to neuronal activity suggested that the blood oxygen level-dependent response becomes faster for rapidly varying stimuli, enabling the detection of higher frequencies than expected. Accounting for phase delays across voxels further improved detection, demonstrating that identifying vascular delays will be of increasing importance with higher-frequency activity. These results challenge the assumption that the hemodynamic response is slow, and demonstrate that fMRI has the potential to map neural oscillations directly throughout the brain.

Rapid subsidence in damaging sinkholes: Measurement by high-precision leveling and the role of salt dissolution

NASA Astrophysics Data System (ADS)

Desir, G.; Gutiérrez, F.; Merino, J.; Carbonel, D.; Benito-Calvo, A.; Guerrero, J.; Fabregat, I.

2018-02-01

Investigations dealing with subsidence monitoring in active sinkholes are very scarce, especially when compared with other ground instability phenomena like landslides. This is largely related to the catastrophic behaviour that typifies most sinkholes in carbonate karst areas. Active subsidence in five sinkholes up to ca. 500 m across has been quantitatively characterised by means of high-precision differential leveling. The sinkholes occur on poorly indurated alluvium underlain by salt-bearing evaporites and cause severe damage on various human structures. The leveling data have provided accurate information on multiple features of the subsidence phenomena with practical implications: (1) precise location of the vaguely-defined edges of the subsidence zones and their spatial relationships with surveyed surface deformation features; (2) spatial deformation patterns and relative contribution of subsidence mechanisms (sagging versus collapse); (3) accurate subsidence rates and their spatial variability with maximum and mean vertical displacement rates ranging from 1.0 to 11.8 cm/yr and 1.9 to 26.1 cm/yr, respectively; (4) identification of sinkholes that experience continuous subsidence at constant rates or with significant temporal changes; and (5) rates of volumetric surface changes as an approximation to rates of dissolution-induced volumetric depletion in the subsurface, reaching as much as 10,900 m3/yr in the largest sinkhole. The high subsidence rates as well as the annual volumetric changes are attributed to rapid dissolution of high-solubility salts.

Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling.

PubMed

Liu, Hui; Dong, Peng; Ioannou, Maria S; Li, Li; Shea, Jamien; Pasolli, H Amalia; Grimm, Jonathan B; Rivlin, Patricia K; Lavis, Luke D; Koyama, Minoru; Liu, Zhe

2018-01-09

Our ability to unambiguously image and track individual molecules in live cells is limited by packing of multiple copies of labeled molecules within the resolution limit. Here we devise a universal genetic strategy to precisely control copy number of fluorescently labeled molecules in a cell. This system has a dynamic range of ∼10,000-fold, enabling sparse labeling of proteins expressed at different abundance levels. Combined with photostable labels, this system extends the duration of automated single-molecule tracking by two orders of magnitude. We demonstrate long-term imaging of synaptic vesicle dynamics in cultured neurons as well as in intact zebrafish. We found axon initial segment utilizes a "waterfall" mechanism gating synaptic vesicle transport polarity by promoting anterograde transport processivity. Long-time observation also reveals that transcription factor hops between clustered binding sites in spatially restricted subnuclear regions, suggesting that topological structures in the nucleus shape local gene activities by a sequestering mechanism. This strategy thus greatly expands the spatiotemporal length scales of live-cell single-molecule measurements, enabling new experiments to quantitatively understand complex control of molecular dynamics in vivo.

An automated 3D reconstruction method of UAV images

NASA Astrophysics Data System (ADS)

Liu, Jun; Wang, He; Liu, Xiaoyang; Li, Feng; Sun, Guangtong; Song, Ping

2015-10-01

In this paper a novel fully automated 3D reconstruction approach based on low-altitude unmanned aerial vehicle system (UAVs) images will be presented, which does not require previous camera calibration or any other external prior knowledge. Dense 3D point clouds are generated by integrating orderly feature extraction, image matching, structure from motion (SfM) and multi-view stereo (MVS) algorithms, overcoming many of the cost, time limitations of rigorous photogrammetry techniques. An image topology analysis strategy is introduced to speed up large scene reconstruction by taking advantage of the flight-control data acquired by UAV. Image topology map can significantly reduce the running time of feature matching by limiting the combination of images. A high-resolution digital surface model of the study area is produced base on UAV point clouds by constructing the triangular irregular network. Experimental results show that the proposed approach is robust and feasible for automatic 3D reconstruction of low-altitude UAV images, and has great potential for the acquisition of spatial information at large scales mapping, especially suitable for rapid response and precise modelling in disaster emergency.

Improvements in High Speed, High Resolution Dynamic Digital Image Correlation for Experimental Evaluation of Composite Drive System Components

NASA Technical Reports Server (NTRS)

Kohlman, Lee W.; Ruggeri, Charles R.; Roberts, Gary D.; Handschuh, Robert Frederick

2013-01-01

Composite materials have the potential to reduce the weight of rotating drive system components. However, these components are more complex to design and evaluate than static structural components in part because of limited ability to acquire deformation and failure initiation data during dynamic tests. Digital image correlation (DIC) methods have been developed to provide precise measurements of deformation and failure initiation for material test coupons and for structures under quasi-static loading. Attempts to use the same methods for rotating components (presented at the AHS International 68th Annual Forum in 2012) are limited by high speed camera resolution, image blur, and heating of the structure by high intensity lighting. Several improvements have been made to the system resulting in higher spatial resolution, decreased image noise, and elimination of heating effects. These improvements include the use of a high intensity synchronous microsecond pulsed LED lighting system, different lenses, and changes in camera configuration. With these improvements, deformation measurements can be made during rotating component tests with resolution comparable to that which can be achieved in static tests

Improvements in High Speed, High Resolution Dynamic Digital Image Correlation for Experimental Evaluation of Composite Drive System Components

NASA Technical Reports Server (NTRS)

Kohlman, Lee; Ruggeri, Charles; Roberts, Gary; Handshuh, Robert

2013-01-01

Composite materials have the potential to reduce the weight of rotating drive system components. However, these components are more complex to design and evaluate than static structural components in part because of limited ability to acquire deformation and failure initiation data during dynamic tests. Digital image correlation (DIC) methods have been developed to provide precise measurements of deformation and failure initiation for material test coupons and for structures under quasi-static loading. Attempts to use the same methods for rotating components (presented at the AHS International 68th Annual Forum in 2012) are limited by high speed camera resolution, image blur, and heating of the structure by high intensity lighting. Several improvements have been made to the system resulting in higher spatial resolution, decreased image noise, and elimination of heating effects. These improvements include the use of a high intensity synchronous microsecond pulsed LED lighting system, different lenses, and changes in camera configuration. With these improvements, deformation measurements can be made during rotating component tests with resolution comparable to that which can be achieved in static tests.

Progress and opportunities in EELS and EDS tomography.

PubMed

Collins, Sean M; Midgley, Paul A

2017-09-01

Electron tomography using energy loss and X-ray spectroscopy in the electron microscope continues to develop in rapidly evolving and diverse directions, enabling new insight into the three-dimensional chemistry and physics of nanoscale volumes. Progress has been made recently in improving reconstructions from EELS and EDS signals in electron tomography by applying compressed sensing methods, characterizing new detector technologies in detail, deriving improved models of signal generation, and exploring machine learning approaches to signal processing. These disparate threads can be brought together in a cohesive framework in terms of a model-based approach to analytical electron tomography. Models incorporate information on signal generation and detection as well as prior knowledge of structures in the spectrum image data. Many recent examples illustrate the flexibility of this approach and its feasibility for addressing challenges in non-linear or limited signals in EELS and EDS tomography. Further work in combining multiple imaging and spectroscopy modalities, developing synergistic data acquisition, processing, and reconstruction approaches, and improving the precision of quantitative spectroscopic tomography will expand the frontiers of spatial resolution, dose limits, and maximal information recovery. Copyright © 2017 Elsevier B.V. All rights reserved.

Compensation of X-ray mirror shape-errors using refractive optics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sawhney, Kawal, E-mail: Kawal.sawhney@diamond.ac.uk; Laundy, David; Pape, Ian

2016-08-01

Focusing of X-rays to nanometre scale focal spots requires high precision X-ray optics. For nano-focusing mirrors, height errors in the mirror surface retard or advance the X-ray wavefront and after propagation to the focal plane, this distortion of the wavefront causes blurring of the focus resulting in a limit on the spatial resolution. We describe here the implementation of a method for correcting the wavefront that is applied before a focusing mirror using custom-designed refracting structures which locally cancel out the wavefront distortion from the mirror. We demonstrate in measurements on a synchrotron radiation beamline a reduction in the sizemore » of the focal spot of a characterized test mirror by a factor of greater than 10 times. This technique could be used to correct existing synchrotron beamline focusing and nanofocusing optics providing a highly stable wavefront with low distortion for obtaining smaller focus sizes. This method could also correct multilayer or focusing crystal optics allowing larger numerical apertures to be used in order to reduce the diffraction limited focal spot size.« less

Laser-induced thermoelastic effects can evoke tactile sensations

NASA Astrophysics Data System (ADS)

Jun, Jae-Hoon; Park, Jong-Rak; Kim, Sung-Phil; Min Bae, Young; Park, Jang-Yeon; Kim, Hyung-Sik; Choi, Seungmoon; Jung, Sung Jun; Hwa Park, Seung; Yeom, Dong-Il; Jung, Gu-In; Kim, Ji-Sun; Chung, Soon-Cheol

2015-06-01

Humans process a plethora of sensory information that is provided by various entities in the surrounding environment. Among the five major senses, technology for touch, haptics, is relatively young and has relatively limited applications largely due to its need for physical contact. In this article, we suggest a new way for non-contact haptic stimulation that uses laser, which has potential advantages such as mid-air stimulation, high spatial precision, and long working distance. We demonstrate such tactile stimulation can be enabled by laser-induced thermoelastic effects by means of physical and perceptual studies, as well as simulations. In the physical study, the mechanical effect of laser on a human skin sample is detected using low-power radiation in accordance with safety guidelines. Limited increases (< ~2.5 °C) in temperature at the surface of the skin, examined by both thermal camera and the Monte Carlo simulation, indicate that laser does not evoke heat-induced nociceptive sensation. In the human EEG study, brain responses to both mechanical and laser stimulation are consistent, along with subjective reports of the non-nociceptive sensation of laser stimuli.

Laser-induced thermoelastic effects can evoke tactile sensations.

PubMed

Jun, Jae-Hoon; Park, Jong-Rak; Kim, Sung-Phil; Min Bae, Young; Park, Jang-Yeon; Kim, Hyung-Sik; Choi, Seungmoon; Jung, Sung Jun; Hwa Park, Seung; Yeom, Dong-Il; Jung, Gu-In; Kim, Ji-Sun; Chung, Soon-Cheol

2015-06-05

Humans process a plethora of sensory information that is provided by various entities in the surrounding environment. Among the five major senses, technology for touch, haptics, is relatively young and has relatively limited applications largely due to its need for physical contact. In this article, we suggest a new way for non-contact haptic stimulation that uses laser, which has potential advantages such as mid-air stimulation, high spatial precision, and long working distance. We demonstrate such tactile stimulation can be enabled by laser-induced thermoelastic effects by means of physical and perceptual studies, as well as simulations. In the physical study, the mechanical effect of laser on a human skin sample is detected using low-power radiation in accordance with safety guidelines. Limited increases (< ~2.5 °C) in temperature at the surface of the skin, examined by both thermal camera and the Monte Carlo simulation, indicate that laser does not evoke heat-induced nociceptive sensation. In the human EEG study, brain responses to both mechanical and laser stimulation are consistent, along with subjective reports of the non-nociceptive sensation of laser stimuli.

Multiplexed lateral flow biosensors: Technological advances for radically improving point-of-care diagnoses.

PubMed

Li, Jia; Macdonald, Joanne

2016-09-15

Lateral flow biosensors are a leading technology in point-of-care diagnostics due to their simplicity, rapidness and low cost. Their primacy in this arena continues through technological breakthroughs such as multiplexing: the detection of more than one biomarker in a single assay. Multiplexing capacity is critical for improving diagnostic efficiency, enhancing the diagnostic precision for specific diseases and reducing diagnostic cost. Here we review, for the first time, the various types and strategies employed for creating multiplexed lateral flow biosensors. These are classified into four main categories in terms of specific application or multiplexing level, namely linear, parameter, spatial and conceptual. We describe the practical applications and implications for each approach and compare their advantages and disadvantages. Importantly, multiplexing is still subject to limitations of the traditional lateral flow biosensor, such as sensitivity and specificity. However, by pushing the limitations of the traditional medium into the multiplex arena, several technological breakthroughs are emerging with novel solutions that further expand the utility of lateral flow biosensing for point-of-care applications. Copyright © 2016 Elsevier B.V. All rights reserved.

On the skill of various ensemble spread estimators for probabilistic short range wind forecasting

NASA Astrophysics Data System (ADS)

Kann, A.

2012-05-01

A variety of applications ranging from civil protection associated with severe weather to economical interests are heavily dependent on meteorological information. For example, a precise planning of the energy supply with a high share of renewables requires detailed meteorological information on high temporal and spatial resolution. With respect to wind power, detailed analyses and forecasts of wind speed are of crucial interest for the energy management. Although the applicability and the current skill of state-of-the-art probabilistic short range forecasts has increased during the last years, ensemble systems still show systematic deficiencies which limit its practical use. This paper presents methods to improve the ensemble skill of 10-m wind speed forecasts by combining deterministic information from a nowcasting system on very high horizontal resolution with uncertainty estimates from a limited area ensemble system. It is shown for a one month validation period that a statistical post-processing procedure (a modified non-homogeneous Gaussian regression) adds further skill to the probabilistic forecasts, especially beyond the nowcasting range after +6 h.

Compact Integration of a GSM-19 Magnetic Sensor with High-Precision Positioning using VRS GNSS Technology

PubMed Central

Martín, Angel; Padín, Jorge; Anquela, Ana Belén; Sánchez, Juán; Belda, Santiago

2009-01-01

Magnetic data consists of a sequence of collected points with spatial coordinates and magnetic information. The spatial location of these points needs to be as exact as possible in order to develop a precise interpretation of magnetic anomalies. GPS is a valuable tool for accomplishing this objective, especially if the RTK approach is used. In this paper the VRS (Virtual Reference Station) technique is introduced as a new approach for real-time positioning of magnetic sensors. The main advantages of the VRS approach are, firstly, that only a single GPS receiver is needed (no base station is necessary), reducing field work and equipment costs. Secondly, VRS can operate at distances separated 50–70 km from the reference stations without degrading accuracy. A compact integration of a GSM-19 magnetometer sensor with a geodetic GPS antenna is presented; this integration does not diminish the operational flexibility of the original magnetometer and can work with the VRS approach. The coupled devices were tested in marshlands around Gandia, a city located approximately 100 km South of Valencia (Spain), thought to be the site of a Roman cemetery. The results obtained show adequate geometry and high-precision positioning for the structures to be studied (a comparison with the original low precision GPS of the magnetometer is presented). Finally, the results of the magnetic survey are of great interest for archaeological purposes. PMID:22574055

Employing Tropospheric Numerical Weather Prediction Model for High-Precision GNSS Positioning

NASA Astrophysics Data System (ADS)

Alves, Daniele; Gouveia, Tayna; Abreu, Pedro; Magário, Jackes

2014-05-01

In the past few years is increasing the necessity of realizing high accuracy positioning. In this sense, the spatial technologies have being widely used. The GNSS (Global Navigation Satellite System) has revolutionized the geodetic positioning activities. Among the existent methods one can emphasize the Precise Point Positioning (PPP) and network-based positioning. But, to get high accuracy employing these methods, mainly in real time, is indispensable to realize the atmospheric modeling (ionosphere and troposphere) accordingly. Related to troposphere, there are the empirical models (for example Saastamoinen and Hopfield). But when highly accuracy results (error of few centimeters) are desired, maybe these models are not appropriated to the Brazilian reality. In order to minimize this limitation arises the NWP (Numerical Weather Prediction) models. In Brazil the CPTEC/INPE (Center for Weather Prediction and Climate Studies / Brazilian Institute for Spatial Researches) provides a regional NWP model, currently used to produce Zenithal Tropospheric Delay (ZTD) predictions (http://satelite.cptec.inpe.br/zenital/). The actual version, called eta15km model, has a spatial resolution of 15 km and temporal resolution of 3 hours. In this paper the main goal is to accomplish experiments and analysis concerning the use of troposphere NWP model (eta15km model) in PPP and network-based positioning. Concerning PPP it was used data from dozens of stations over the Brazilian territory, including Amazon forest. The results obtained with NWP model were compared with Hopfield one. NWP model presented the best results in all experiments. Related to network-based positioning it was used data from GNSS/SP Network in São Paulo State, Brazil. This network presents the best configuration in the country to realize this kind of positioning. Actually the network is composed by twenty stations (http://www.fct.unesp.br/#!/pesquisa/grupos-de-estudo-e-pesquisa/gege//gnss-sp-network2789/). The results obtained employing NWP model also were compared to Hopfield one, and the results were very interesting. The theoretical concepts, experiments, results and analysis will be presented in this paper.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lou, K; Rice University, Houston, TX; Sun, X

Purpose: To study the feasibility of clinical on-line proton beam range verification with PET imaging Methods: We simulated a 179.2-MeV proton beam with 5-mm diameter irradiating a PMMA phantom of human brain size, which was then imaged by a brain PET with 300*300*100-mm{sup 3} FOV and different system sensitivities and spatial resolutions. We calculated the mean and standard deviation of positron activity range (AR) from reconstructed PET images, with respect to different data acquisition times (from 5 sec to 300 sec with 5-sec step). We also developed a technique, “Smoothed Maximum Value (SMV)”, to improve AR measurement under a givenmore » dose. Furthermore, we simulated a human brain irradiated by a 110-MeV proton beam of 50-mm diameter with 0.3-Gy dose at Bragg peak and imaged by the above PET system with 40% system sensitivity at the center of FOV and 1.7-mm spatial resolution. Results: MC Simulations on the PMMA phantom showed that, regardless of PET system sensitivities and spatial resolutions, the accuracy and precision of AR were proportional to the reciprocal of the square root of image count if image smoothing was not applied. With image smoothing or SMV method, the accuracy and precision could be substantially improved. For a cylindrical PMMA phantom (200 mm diameter and 290 mm long), the accuracy and precision of AR measurement could reach 1.0 and 1.7 mm, with 100-sec data acquired by the brain PET. The study with a human brain showed it was feasible to achieve sub-millimeter accuracy and precision of AR measurement with acquisition time within 60 sec. Conclusion: This study established the relationship between count statistics and the accuracy and precision of activity-range verification. It showed the feasibility of clinical on-line BR verification with high-performance PET systems and improved AR measurement techniques. Cancer Prevention and Research Institute of Texas grant RP120326, NIH grant R21CA187717, The Cancer Center Support (Core) Grant CA016672 to MD Anderson Cancer Center.« less

Precision thermometry and the quantum speed limit

NASA Astrophysics Data System (ADS)

Campbell, Steve; Genoni, Marco G.; Deffner, Sebastian

2018-04-01

We assess precision thermometry for an arbitrary single quantum system. For a d-dimensional harmonic system we show that the gap sets a single temperature that can be optimally estimated. Furthermore, we establish a simple linear relationship between the gap and this temperature, and show that the precision exhibits a quadratic relationship. We extend our analysis to explore systems with arbitrary spectra, showing that exploiting anharmonicity and degeneracy can greatly enhance the precision of thermometry. Finally, we critically assess the dynamical features of two thermometry protocols for a two level system. By calculating the quantum speed limit we find that, despite the gap fixing a preferred temperature to probe, there is no evidence of this emerging in the dynamical features.

Dynamics of statistical distance: Quantum limits for two-level clocks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Braunstein, S.L.; Milburn, G.J.

1995-03-01

We study the evolution of statistical distance on the Bloch sphere under unitary and nonunitary dynamics. This corresponds to studying the limits to clock precision for a clock constructed from a two-state system. We find that the initial motion away from pure states under nonunitary dynamics yields the greatest accuracy for a one-tick'' clock; in this case the clock's precision is not limited by the largest frequency of the system.

Sources, Sinks, and Model Accuracy

EPA Science Inventory

Spatial demographic models are a necessary tool for understanding how to manage landscapes sustainably for animal populations. These models, therefore, must offer precise and testable predications about animal population dynamics and how animal demographic parameters respond to ...

Attentional priority determines working memory precision.

PubMed

Klyszejko, Zuzanna; Rahmati, Masih; Curtis, Clayton E

2014-12-01

Visual working memory is a system used to hold information actively in mind for a limited time. The number of items and the precision with which we can store information has limits that define its capacity. How much control do we have over the precision with which we store information when faced with these severe capacity limitations? Here, we tested the hypothesis that rank-ordered attentional priority determines the precision of multiple working memory representations. We conducted two psychophysical experiments that manipulated the priority of multiple items in a two-alternative forced choice task (2AFC) with distance discrimination. In Experiment 1, we varied the probabilities with which memorized items were likely to be tested. To generalize the effects of priority beyond simple cueing, in Experiment 2, we manipulated priority by varying monetary incentives contingent upon successful memory for items tested. Moreover, we illustrate our hypothesis using a simple model that distributed attentional resources across items with rank-ordered priorities. Indeed, we found evidence in both experiments that priority affects the precision of working memory in a monotonic fashion. Our results demonstrate that representations of priority may provide a mechanism by which resources can be allocated to increase the precision with which we encode and briefly store information. Copyright © 2014 Elsevier Ltd. All rights reserved.

Capacity and precision in an animal model of visual short-term memory

PubMed Central

Lara, Antonio H.; Wallis, Jonathan D.

2013-01-01

Temporary storage of information in visual short-term memory (VSTM) is a key component of many complex cognitive abilities. However, it is highly limited in capacity. Understanding the neurophysiological nature of this capacity limit will require a valid animal model of VSTM. We used a multiple-item color change detection task to measure macaque monkeys’ VSTM capacity. Subjects’ performance deteriorated and reaction times increased as a function of the number of items in memory. Additionally, we measured the precision of the memory representations by varying the distance between sample and test colors. In trials with similar sample and test colors, subjects made more errors compared to trials with highly discriminable colors. We modeled the error distribution as a Gaussian function and used this to estimate the precision of VSTM representations. We found that as the number of items in memory increases the precision of the representations decreases dramatically. Additionally, we found that focusing attention on one of the objects increases the precision with which that object is stored and degrading the precision of the remaining. These results are in line with recent findings in human psychophysics and provide a solid foundation for understanding the neurophysiological nature of the capacity limit of VSTM. PMID:22419756

rpe v5: an emulator for reduced floating-point precision in large numerical simulations

NASA Astrophysics Data System (ADS)

Dawson, Andrew; Düben, Peter D.

2017-06-01

This paper describes the rpe (reduced-precision emulator) library which has the capability to emulate the use of arbitrary reduced floating-point precision within large numerical models written in Fortran. The rpe software allows model developers to test how reduced floating-point precision affects the result of their simulations without having to make extensive code changes or port the model onto specialized hardware. The software can be used to identify parts of a program that are problematic for numerical precision and to guide changes to the program to allow a stronger reduction in precision.The development of rpe was motivated by the strong demand for more computing power. If numerical precision can be reduced for an application under consideration while still achieving results of acceptable quality, computational cost can be reduced, since a reduction in numerical precision may allow an increase in performance or a reduction in power consumption. For simulations with weather and climate models, savings due to a reduction in precision could be reinvested to allow model simulations at higher spatial resolution or complexity, or to increase the number of ensemble members to improve predictions. rpe was developed with a particular focus on the community of weather and climate modelling, but the software could be used with numerical simulations from other domains.

Characterization of conductive nanobiomaterials derived from viral assemblies by low-voltage STEM imaging and Raman scattering

NASA Astrophysics Data System (ADS)

Plascencia-Villa, Germán; Carreño-Fuentes, Liliana; Bahena, Daniel; José-Yacamán, Miguel; Palomares, Laura A.; Ramírez, Octavio T.

2014-09-01

New technologies require the development of novel nanomaterials that need to be fully characterized to achieve their potential. High-resolution low-voltage scanning transmission electron microscopy (STEM) has proven to be a very powerful technique in nanotechnology, but its use for the characterization of nanobiomaterials has been limited. Rotavirus VP6 self-assembles into nanotubular assemblies that possess an intrinsic affinity for Au ions. This property was exploited to produce hybrid nanobiomaterials by the in situ functionalization of recombinant VP6 nanotubes with gold nanoparticles. In this work, Raman spectroscopy and advanced analytical electron microscopy imaging with spherical aberration-corrected (Cs) STEM and nanodiffraction at low-voltage doses were employed to characterize nanobiomaterials. STEM imaging revealed the precise structure and arrangement of the protein templates, as well as the nanostructure and atomic arrangement of gold nanoparticles with high spatial sub-Angstrom resolution and avoided radiation damage. The imaging was coupled with backscattered electron imaging, ultra-high resolution scanning electron microscopy and x-ray spectroscopy. The hybrid nanobiomaterials that were obtained showed unique properties as bioelectronic conductive devices and showed enhanced Raman scattering by their precise arrangement into superlattices, displaying the utility of viral assemblies as functional integrative self-assembled nanomaterials for novel applications.

Selecting the optimum plot size for a California design-based stream and wetland mapping program.

PubMed

Lackey, Leila G; Stein, Eric D

2014-04-01

Accurate estimates of the extent and distribution of wetlands and streams are the foundation of wetland monitoring, management, restoration, and regulatory programs. Traditionally, these estimates have relied on comprehensive mapping. However, this approach is prohibitively resource-intensive over large areas, making it both impractical and statistically unreliable. Probabilistic (design-based) approaches to evaluating status and trends provide a more cost-effective alternative because, compared with comprehensive mapping, overall extent is inferred from mapping a statistically representative, randomly selected subset of the target area. In this type of design, the size of sample plots has a significant impact on program costs and on statistical precision and accuracy; however, no consensus exists on the appropriate plot size for remote monitoring of stream and wetland extent. This study utilized simulated sampling to assess the performance of four plot sizes (1, 4, 9, and 16 km(2)) for three geographic regions of California. Simulation results showed smaller plot sizes (1 and 4 km(2)) were most efficient for achieving desired levels of statistical accuracy and precision. However, larger plot sizes were more likely to contain rare and spatially limited wetland subtypes. Balancing these considerations led to selection of 4 km(2) for the California status and trends program.

Molecular deconstruction, detection, and computational prediction of microenvironment-modulated cellular responses to cancer therapeutics.

PubMed

Labarge, Mark A; Parvin, Bahram; Lorens, James B

2014-04-01

The field of bioengineering has pioneered the application of new precision fabrication technologies to model the different geometric, physical or molecular components of tissue microenvironments on solid-state substrata. Tissue engineering approaches building on these advances are used to assemble multicellular mimetic-tissues where cells reside within defined spatial contexts. The functional responses of cells in fabricated microenvironments have revealed a rich interplay between the genome and extracellular effectors in determining cellular phenotypes and in a number of cases have revealed the dominance of microenvironment over genotype. Precision bioengineered substrata are limited to a few aspects, whereas cell/tissue-derived microenvironments have many undefined components. Thus, introducing a computational module may serve to integrate these types of platforms to create reasonable models of drug responses in human tissues. This review discusses how combinatorial microenvironment microarrays and other biomimetic microenvironments have revealed emergent properties of cells in particular microenvironmental contexts, the platforms that can measure phenotypic changes within those contexts, and the computational tools that can unify the microenvironment-imposed functional phenotypes with underlying constellations of proteins and genes. Ultimately we propose that a merger of these technologies will enable more accurate pre-clinical drug discovery. Copyright © 2014 Elsevier B.V. All rights reserved.

The Stellar Origins of Supernovae

NASA Astrophysics Data System (ADS)

Van Dyk, Schuyler

2007-07-01

Supernovae {SNe} have a profound effect on galaxies, and have been used recently as precise cosmological probes, resulting in the discovery of the accelerating Universe. They are clearly very important events deserving of intense study. Yet, even with nearly 4000 known SNe, we know relatively little about the stars which give rise to these powerful explosions. The main limitation has been the lack of spatial resolution in pre-SN imaging data. However, since 1999 our team has been at the vanguard of directly identifying SN progenitor stars in HST images. From this exciting new line of study, the emerging trend from 5 detections for Type II-Plateau SNe is that their progenitors appear to be relatively low mass {8 to 20 Msun} red supergiants, although more cases are needed. Nonetheless, the nature of the progenitors of Type Ib/c SNe, a subset of which are associated with the amazing gamma-ray bursts, remains ambiguous. Furthermore, we remain in the continually embarrassing situation that we still do not yet know which progenitor systems explode as Type Ia SNe, which are currently being used for precision cosmology. We propose to confirm the identities of the progenitors of 4 SNe within 17 Mpc, which we expect to occur during Cycle 16, through ToO observations using WFPC2/PC.

Evaluating sampling designs by computer simulation: A case study with the Missouri bladderpod

USGS Publications Warehouse

Morrison, L.W.; Smith, D.R.; Young, C.; Nichols, D.W.

2008-01-01

To effectively manage rare populations, accurate monitoring data are critical. Yet many monitoring programs are initiated without careful consideration of whether chosen sampling designs will provide accurate estimates of population parameters. Obtaining accurate estimates is especially difficult when natural variability is high, or limited budgets determine that only a small fraction of the population can be sampled. The Missouri bladderpod, Lesquerella filiformis Rollins, is a federally threatened winter annual that has an aggregated distribution pattern and exhibits dramatic interannual population fluctuations. Using the simulation program SAMPLE, we evaluated five candidate sampling designs appropriate for rare populations, based on 4 years of field data: (1) simple random sampling, (2) adaptive simple random sampling, (3) grid-based systematic sampling, (4) adaptive grid-based systematic sampling, and (5) GIS-based adaptive sampling. We compared the designs based on the precision of density estimates for fixed sample size, cost, and distance traveled. Sampling fraction and cost were the most important factors determining precision of density estimates, and relative design performance changed across the range of sampling fractions. Adaptive designs did not provide uniformly more precise estimates than conventional designs, in part because the spatial distribution of L. filiformis was relatively widespread within the study site. Adaptive designs tended to perform better as sampling fraction increased and when sampling costs, particularly distance traveled, were taken into account. The rate that units occupied by L. filiformis were encountered was higher for adaptive than for conventional designs. Overall, grid-based systematic designs were more efficient and practically implemented than the others. ?? 2008 The Society of Population Ecology and Springer.

Precise 3D printing of micro/nanostructures using highly conductive carbon nanotube-thiol-acrylate composites

NASA Astrophysics Data System (ADS)

Liu, Y.; Xiong, W.; Jiang, L. J.; Zhou, Y. S.; Lu, Y. F.

2016-04-01

Two-photon polymerization (TPP) is of increasing interest due to its unique combination of truly three-dimensional (3D) fabrication capability and ultrahigh spatial resolution of ~40 nm. However, the stringent requirements of non-linear resins seriously limit the material functionality of 3D printing via TPP. Precise fabrication of 3D micro/nanostructures with multi-functionalities such as high electrical conductivity and mechanical strength is still a long-standing challenge. In this work, TPP fabrication of arbitrary 3D micro/nanostructures using multi-walled carbon nanotube (MWNT)-thiolacrylate (MTA) composite resins has been developed. Up to 0.2 wt% MWNTs have been incorporated into thiol-acrylate resins to form highly stable and uniform composite photoresists without obvious degradation for one week at room temperature. Various functional 3D micro/nanostructures including woodpiles, micro-coils, spiral-like photonic crystals, suspended micro-bridges, micro-gears and complex micro-cars have been successfully fabricated. The MTA composite resin offers significant enhancements in electrical conductivity and mechanical strength, and on the same time, preserving high optical transmittance and flexibility. Tightly controlled alignment of MWNTs and the strong anisotropy effect were confirmed. Microelectronic devices including capacitors and resistors made of the MTA composite polymer were demonstrated. The 3D micro/nanofabrication using the MTA composite resins enables the precise 3D printing of micro/nanostructures of high electrical conductivity and mechanical strength, which is expected to lead a wide range of device applications, including micro/nano-electromechanical systems (MEMS/NEMS), integrated photonics and 3D electronics.

Toward precise site-controlling of self-assembled Ge quantum dots on Si microdisks.

PubMed

Wang, Shuguang; Zhang, Ningning; Chen, Peizong; Wang, Liming; Yang, Xinju; Jiang, Zuimin; Zhong, Zhenyang

2018-08-24

A feasible route is developed toward precise site-controlling of quantum dots (QDs) at the microdisk periphery, where most microdisk cavity modes are located. The preferential growth of self-assembled Ge QDs at the periphery of Si microdisks is discovered. Moreover, both the height and linear density of Ge QDs can be controlled by tuning the amount of deposited Ge and the microdisk size. The inherent mechanisms of these unique features are discussed, taking into account both the growth kinetics and thermodynamics. By growing Ge on the innovative Si microdisks with small protrusions at the disk periphery, the positioning of Ge QDs at the periphery can be exactly predetermined. Such a precise site-controlling of Ge QDs at the periphery enables the location of the QD right at the field antinodes of the cavity mode of the Si microdisk, thereby achieving spatial matching between QD and cavity mode. These results open a promising door to realize the semiconductor QD-microdisk systems with both spectral and spatial matching between QDs and microdisk cavity modes, which will be the promising candidates for exploring the fundamental features of cavity quantum electrodynamics and the innovative optoelectronic devices based on strong light-matter interaction.

Real-time line matching from stereo images using a nonparametric transform of spatial relations and texture information

NASA Astrophysics Data System (ADS)

Park, Jonghee; Yoon, Kuk-Jin

2015-02-01

We propose a real-time line matching method for stereo systems. To achieve real-time performance while retaining a high level of matching precision, we first propose a nonparametric transform to represent the spatial relations between neighboring lines and nearby textures as a binary stream. Since the length of a line can vary across images, the matching costs between lines are computed within an overlap area (OA) based on the binary stream. The OA is determined for each line pair by employing the properties of a rectified image pair. Finally, the line correspondence is determined using a winner-takes-all method with a left-right consistency check. To reduce the computational time requirements further, we filter out unreliable matching candidates in advance based on their rectification properties. The performance of the proposed method was compared with state-of-the-art methods in terms of the computational time, matching precision, and recall. The proposed method required 47 ms to match lines from an image pair in the KITTI dataset with an average precision of 95%. We also verified the proposed method under image blur, illumination variation, and viewpoint changes.

Opportunities for Maturing Precision Metrology with Ultracold Gas Studies Aboard the ISS

NASA Astrophysics Data System (ADS)

Williams, Jason; D'Incao, Jose

2017-04-01

Precision atom interferometers (AI) in space are expected to become an enabling technology for future fundamental physics research, with proposals including unprecedented tests of the validity of the weak equivalence principle, measurements of the fine structure and gravitational constants, and detection of gravity waves and dark matter/dark energy. We will discuss our preparation at JPL to use NASA's Cold Atom Lab facility (CAL) to mature the technology of precision, space-based, AIs. The focus of our flight project is three-fold: a) study the controlled dynamics of heteronuclear Feshbach molecules, at temperatures of nano-Kelvins or below, as a means to overcome uncontrolled density-profile-dependent shifts in differential AIs, b) demonstrate unprecedented atom-photon coherence times with spatially constrained AIs, c) use the imaging capabilities of CAL to detect and analyze spatial fringe patterns written onto the clouds after AI and thereby measure the rotational noise of the ISS. The impact from this work, and potential for follow-on studies, will also be reviewed in the context of future space-based fundamental physics missions. This research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.

Crop traceability and remote sensing in tree fruit

NASA Astrophysics Data System (ADS)

Perry, Eileen M.; Rupp, Richard; Davenport, Joan; Leal, Juliano; Pierce, Francis J.; Schulthess, Urs

2004-01-01

Fresh market fruit crops such as apples have not employed precision agriculture tools, partially due to the labor intensive nature of the cropping systems. In this paper we describe new research in the development of precision agriculture tools for tree fruit, including the ability to track spatially variable orchard data before harvest through to the packing plant. Remote sensing is a key component of this system, and remote sensing products are being evaluated for their usefulness in guiding orchard management.

Satellite Laser Ranging operations

NASA Technical Reports Server (NTRS)

Pearlman, Michael R.

1994-01-01

Satellite Laser Ranging (SLR) is currently providing precision orbit determination for measurements of: 1) Ocean surface topography from satellite borne radar altimetry, 2) Spatial and temporal variations of the gravity field, 3) Earth and ocean tides, 4) Plate tectonic and regional deformation, 5) Post-glacial uplift and subsidence, 6) Variations in the Earth's center-of-mass, and 7) Variations in Earth rotation. SLR also supports specialized programs in time transfer and classical geodetic positioning, and will soon provide precision ranging to support experiments in relativity.

LDPC decoder with a limited-precision FPGA-based floating-point multiplication coprocessor

NASA Astrophysics Data System (ADS)

Moberly, Raymond; O'Sullivan, Michael; Waheed, Khurram

2007-09-01

Implementing the sum-product algorithm, in an FPGA with an embedded processor, invites us to consider a tradeoff between computational precision and computational speed. The algorithm, known outside of the signal processing community as Pearl's belief propagation, is used for iterative soft-decision decoding of LDPC codes. We determined the feasibility of a coprocessor that will perform product computations. Our FPGA-based coprocessor (design) performs computer algebra with significantly less precision than the standard (e.g. integer, floating-point) operations of general purpose processors. Using synthesis, targeting a 3,168 LUT Xilinx FPGA, we show that key components of a decoder are feasible and that the full single-precision decoder could be constructed using a larger part. Soft-decision decoding by the iterative belief propagation algorithm is impacted both positively and negatively by a reduction in the precision of the computation. Reducing precision reduces the coding gain, but the limited-precision computation can operate faster. A proposed solution offers custom logic to perform computations with less precision, yet uses the floating-point format to interface with the software. Simulation results show the achievable coding gain. Synthesis results help theorize the the full capacity and performance of an FPGA-based coprocessor.

Chapter 10: Precision Agriculture for Sustainability and Environmental Protection

USDA-ARS?s Scientific Manuscript database

Available supplies of water for irrigation and other uses are becoming more limited around the world, and this trend is accelerating. Emerging computerized precision irrigation technologies will enable growers to apply water and agrochemicals more precisely and site-specifically to match the status...

Gap junctions between interneurons are required for normal spatial coding in the hippocampus and short-term spatial memory

PubMed Central

Allen, Kevin; Fuchs, Elke C.; Jaschonek, Hannah; Bannerman, David M.; Monyer, Hannah

2011-01-01

Gap junctions containing connexin-36 (Cx36) electrically couple interneurons in many brain regions and synchronize their activity. We used Cx36 knockout mice (Cx36−/−) to study the importance of electrical coupling between interneurons for spatial coding in the hippocampus and for different forms of hippocampus-dependent spatial memory. Recordings in behaving mice revealed that the spatial selectivity of hippocampal pyramidal neurons was reduced and less stable in Cx36−/− mice. Altered network activity was reflected in slower theta oscillations in the mutants. Temporal coding, assessed by determining the presence and characteristics of theta phase precession, had different dynamics in Cx36−/− mice compared to controls. At the behavioral level, Cx36−/− mice displayed impaired short-term spatial memory but normal spatial reference memory. These results highlight the functional role of electrically coupled interneurons for spatial coding and cognition. Moreover, they suggest that the precise spatial selectivity of place cells is not essential for normal performance on spatial tasks assessing associative long-term memory. PMID:21525295

Spatially controlled coating of continuous liquid Interface production microneedles for transdermal protein delivery.

PubMed

Caudill, Cassie L; Perry, Jillian L; Tian, Shaomin; Luft, J Christopher; DeSimone, Joseph M

2018-06-09

Microneedle patches, arrays of micron-scale projections that penetrate skin in a minimally invasive manner, are a promising tool for transdermally delivering therapeutic proteins. However, current microneedle fabrication techniques are limited in their ability to fabricate microneedles rapidly and with a high degree of control over microneedle design parameters. We have previously demonstrated the ability to fabricate microneedle patches with a range of compositions and geometries using the novel additive manufacturing technique Continuous Liquid Interface Production (CLIP). Here, we establish a method for dip coating CLIP microneedles with protein cargo in a spatially controlled manner. Microneedle coating mask devices were fabricated with CLIP and utilized to coat polyethylene glycol-based CLIP microneedles with model proteins bovine serum albumin, ovalbumin, and lysozyme. The design of the coating mask device was used to control spatial deposition and loading of coated protein cargo on the microneedles. CLIP microneedles rapidly released coated protein cargo both in solution and upon insertion into porcine skin. The model enzyme lysozyme was shown to retain its activity throughout the CLIP microneedle coating process, and permeation of bovine serum albumin across full thickness porcine skin was observed after application with coated CLIP microneedles. Protein-coated CLIP microneedles were applied to live mice and showed sustained retention of protein cargo in the skin over 72 h. These results demonstrate the utility of a versatile coating platform for preparation of precisely coated microneedles for transdermal therapeutic delivery. Copyright © 2018. Published by Elsevier B.V.

Design and application of a mobile ground-based observatory for continuous measurements of atmospheric trace-gas and criteria pollutant species

NASA Astrophysics Data System (ADS)

Bush, S. E.; Hopkins, F. M.; Randerson, J. T.; Lai, C.-T.; Ehleringer, J. R.

2015-01-01

Ground-based measurements of atmospheric trace gas species and criteria pollutants are essential for understanding emissions dynamics across space and time. Gas composition in the surface 50 m has the greatest direct impacts on human health as well as ecosystem processes, hence data at this level is necessary for addressing carbon cycle and public health related questions. However, such surface data are generally associated with stationary measurement towers, where spatial representation is limited due to the high cost of establishing and maintaining an extensive network of measurement stations. We describe here a compact mobile laboratory equipped to provide high-precision, high-frequency, continuous, on-road synchronous measurements of CO2, CO, CH4, H2O, NOx, O3, aerosol, meteorological, and geospatial position data. The mobile laboratory has been deployed across the western USA. In addition to describing the vehicle and its capacity, we present data that illustrate the use of the laboratory as a powerful tool for investigating the spatial structure of urban trace gas emissions and criteria pollutants at spatial scales ranging from single streets to whole ecosystem and regional scales. We identify fugitive urban CH4 emissions and assess the magnitude of CH4 emissions from known point sources. We illustrate how such a mobile laboratory can be used to better understand emissions dynamics and quantify emissions ratios associated with trace gas emissions from wildfire incidents. Lastly, we discuss additional mobile laboratory applications in health and urban metabolism.

Apollo 9 multiband photography experiment S065

NASA Technical Reports Server (NTRS)

Schowengerdt, R. A.; Slater, P. N.

1972-01-01

Fourier analysis was applied to microdensitometer scans of a selected region of one SO65 frame in each of the three black-and-white bands. The approach was unique because a somewhat arbitrary section of the image was used and not limited to available targets as in edge analysis. Comparison of duplicates and calculation of absolute SO65 MTF were done by applying linear systems theory to the spatial spectra of the image scans. It was found that the duplication process was nonlinear and resulted in general amplification of spatial frequency modulation. However, the increase in modulation was offset by a corresponding increase in the granularity of the copies. The amount of increase seemed to be related to the initial granularity, but a direct relationship was not verified. Band-to-band comparison of image quality was achieved in the form of signal-to-noise ratio curves as a function of spatial frequency for each band. From this standpoint the DD band was an order of magnitude better than the other two. These were several factors that restricted the analysis of the Apollo 9 imagery. Among these were the lack of precise sensitometric and optical system data on the high altitude photography. In addition it was determined that there was only one simultaneous pair of high altitude and SO65 frames. Finally, the original SO65 photography was not available for scanning (for obvious reasons), thus eliminating a reference base for granularity and SO65 MTF determination.

Development of ultrahigh resolution alpha particle imaging detector using 1 mm channel size Si-PM array

NASA Astrophysics Data System (ADS)

Yamamoto, Seiichi; Kawaguchi, Wataru

2018-06-01

For precise distribution measurements of alpha particles, a high-resolution alpha particle imaging detector is required. Although combining a thin scintillator with a silicon photomultiplier (Si-PM) array is a promising method for achieving high resolution, the spatial resolution is limited. Reducing the size of the Si-PM array is a possible approach to improving the spatial resolution of the alpha particle imaging detector. Consequently, we employed a 1 mm channel size Si-PM array combined with a thin ZnS(Ag) sheet to form an alpha particle imaging detector and evaluated the performance. For the developed alpha particle imaging detector, an Si-PM array with 1 mm x 1 mm channel size arranged 8 x 8 was optically coupled to a ZnS(Ag) sheet with a 1-mm-thick light guide between them. The size of the alpha particle imaging detector was 9.5 mm x 9.5 mm. The spatial resolution of the developed alpha particle imaging detector was 0.14 mm FWHM, and the energy resolution was 74% FWHM for 5.5 MeV alpha particles. The uniformity of the imaging detector at the central part of the field of view (FOV) was ±4.7%. The background count rate was 0.06 counts/min. We obtained various high-resolution phantom images for alpha particles with the developed system. We conclude that the developed imaging detector is promising for high-resolution distribution measurements of alpha particles.

Speech Cues Contribute to Audiovisual Spatial Integration

PubMed Central

Bishop, Christopher W.; Miller, Lee M.

2011-01-01

Speech is the most important form of human communication but ambient sounds and competing talkers often degrade its acoustics. Fortunately the brain can use visual information, especially its highly precise spatial information, to improve speech comprehension in noisy environments. Previous studies have demonstrated that audiovisual integration depends strongly on spatiotemporal factors. However, some integrative phenomena such as McGurk interference persist even with gross spatial disparities, suggesting that spatial alignment is not necessary for robust integration of audiovisual place-of-articulation cues. It is therefore unclear how speech-cues interact with audiovisual spatial integration mechanisms. Here, we combine two well established psychophysical phenomena, the McGurk effect and the ventriloquist's illusion, to explore this dependency. Our results demonstrate that conflicting spatial cues may not interfere with audiovisual integration of speech, but conflicting speech-cues can impede integration in space. This suggests a direct but asymmetrical influence between ventral ‘what’ and dorsal ‘where’ pathways. PMID:21909378

Breaking the acoustic diffraction barrier with localization optoacoustic tomography

NASA Astrophysics Data System (ADS)

Deán-Ben, X. Luís.; Razansky, Daniel

2018-02-01

Diffraction causes blurring of high-resolution features in images and has been traditionally associated to the resolution limit in light microscopy and other imaging modalities. The resolution of an imaging system can be generally assessed via its point spread function, corresponding to the image acquired from a point source. However, the precision in determining the position of an isolated source can greatly exceed the diffraction limit. By combining the estimated positions of multiple sources, localization-based imaging has resulted in groundbreaking methods such as super-resolution fluorescence optical microscopy and has also enabled ultrasound imaging of microvascular structures with unprecedented spatial resolution in deep tissues. Herein, we introduce localization optoacoustic tomography (LOT) and discuss on the prospects of using localization imaging principles in optoacoustic imaging. LOT was experimentally implemented by real-time imaging of flowing particles in 3D with a recently-developed volumetric optoacoustic tomography system. Provided the particles were separated by a distance larger than the diffraction-limited resolution, their individual locations could be accurately determined in each frame of the acquired image sequence and the localization image was formed by superimposing a set of points corresponding to the localized positions of the absorbers. The presented results demonstrate that LOT can significantly enhance the well-established advantages of optoacoustic imaging by breaking the acoustic diffraction barrier in deep tissues and mitigating artifacts due to limited-view tomographic acquisitions.

4D electron microscopy: principles and applications.

PubMed

Flannigan, David J; Zewail, Ahmed H

2012-10-16

The transmission electron microscope (TEM) is a powerful tool enabling the visualization of atoms with length scales smaller than the Bohr radius at a factor of only 20 larger than the relativistic electron wavelength of 2.5 pm at 200 keV. The ability to visualize matter at these scales in a TEM is largely due to the efforts made in correcting for the imperfections in the lens systems which introduce aberrations and ultimately limit the achievable spatial resolution. In addition to the progress made in increasing the spatial resolution, the TEM has become an all-in-one characterization tool. Indeed, most of the properties of a material can be directly mapped in the TEM, including the composition, structure, bonding, morphology, and defects. The scope of applications spans essentially all of the physical sciences and includes biology. Until recently, however, high resolution visualization of structural changes occurring on sub-millisecond time scales was not possible. In order to reach the ultrashort temporal domain within which fundamental atomic motions take place, while simultaneously retaining high spatial resolution, an entirely new approach from that of millisecond-limited TEM cameras had to be conceived. As shown below, the approach is also different from that of nanosecond-limited TEM, whose resolution cannot offer the ultrafast regimes of dynamics. For this reason "ultrafast electron microscopy" is reserved for the field which is concerned with femtosecond to picosecond resolution capability of structural dynamics. In conventional TEMs, electrons are produced by heating a source or by applying a strong extraction field. Both methods result in the stochastic emission of electrons, with no control over temporal spacing or relative arrival time at the specimen. The timing issue can be overcome by exploiting the photoelectric effect and using pulsed lasers to generate precisely timed electron packets of ultrashort duration. The spatial and temporal resolutions achievable with short intense pulses containing a large number of electrons, however, are limited to tens of nanometers and nanoseconds, respectively. This is because Coulomb repulsion is significant in such a pulse, and the electrons spread in space and time, thus limiting the beam coherence. It is therefore not possible to image the ultrafast elementary dynamics of complex transformations. The challenge was to retain the high spatial resolution of a conventional TEM while simultaneously enabling the temporal resolution required to visualize atomic-scale motions. In this Account, we discuss the development of four-dimensional ultrafast electron microscopy (4D UEM) and summarize techniques and applications that illustrate the power of the approach. In UEM, images are obtained either stroboscopically with coherent single-electron packets or with a single electron bunch. Coulomb repulsion is absent under the single-electron condition, thus permitting imaging, diffraction, and spectroscopy, all with high spatiotemporal resolution, the atomic scale (sub-nanometer and femtosecond). The time resolution is limited only by the laser pulse duration and energy carried by the electron packets; the CCD camera has no bearing on the temporal resolution. In the regime of single pulses of electrons, the temporal resolution of picoseconds can be attained when hundreds of electrons are in the bunch. The applications given here are selected to highlight phenomena of different length and time scales, from atomic motions during structural dynamics to phase transitions and nanomechanical oscillations. We conclude with a brief discussion of emerging methods, which include scanning ultrafast electron microscopy (S-UEM), scanning transmission ultrafast electron microscopy (ST-UEM) with convergent beams, and time-resolved imaging of biological structures at ambient conditions with environmental cells.

Computational-optical microscopy for 3D biological imaging beyond the diffraction limit

NASA Astrophysics Data System (ADS)

Grover, Ginni

In recent years, super-resolution imaging has become an important fluorescent microscopy tool. It has enabled imaging of structures smaller than the optical diffraction limit with resolution less than 50 nm. Extension to high-resolution volume imaging has been achieved by integration with various optical techniques. In this thesis, development of a fluorescent microscope to enable high resolution, extended depth, three dimensional (3D) imaging is discussed; which is achieved by integration of computational methods with optical systems. In the first part of the thesis, point spread function (PSF) engineering for volume imaging is discussed. A class of PSFs, referred to as double-helix (DH) PSFs, is generated. The PSFs exhibit two focused spots in the image plane which rotate about the optical axis, encoding depth in rotation of the image. These PSFs extend the depth-of-field up to a factor of ˜5. Precision performance of the DH-PSFs, based on an information theoretical analysis, is compared with other 3D methods with conclusion that the DH-PSFs provide the best precision and the longest depth-of-field. Out of various possible DH-PSFs, a suitable PSF is obtained for super-resolution microscopy. The DH-PSFs are implemented in imaging systems, such as a microscope, with a special phase modulation at the pupil plane. Surface-relief elements which are polarization-insensitive and ˜90% light efficient are developed for phase modulation. The photon-efficient DH-PSF microscopes thus developed are used, along with optimal position estimation algorithms, for tracking and super-resolution imaging in 3D. Imaging at depths-of-field of up to 2.5 microm is achieved without focus scanning. Microtubules were imaged with 3D resolution of (6, 9, 39) nm, which is in close agreement with the theoretical limit. A quantitative study of co-localization of two proteins in volume was conducted in live bacteria. In the last part of the thesis practical aspects of the DH-PSF microscope are discussed. A method to stabilize it, for extended periods of time, with 3-4 nm precision in 3D is developed. 3D Super-resolution is demonstrated without drift. A PSF correction algorithm is demonstrated to improve characteristics of the DH-PSF in an experiment, where it is implemented with a polarization-insensitive liquid crystal spatial light modulator.

Soil Macronutrient Sensing for Precision Agriculture

USDA-ARS?s Scientific Manuscript database

Accurate measurements of soil macronutrients (i.e., nitrogen, phosphorus, and potassium) are needed for efficient agricultural production, including site-specific crop management (SSCM), where fertilizer nutrient application rates are adjusted spatially based on local requirements. Rapid, non-destru...

Selective attention within the foveola.

PubMed

Poletti, Martina; Rucci, Michele; Carrasco, Marisa

2017-10-01

Efficient control of attentional resources and high-acuity vision are both fundamental for survival. Shifts in visual attention are known to covertly enhance processing at locations away from the center of gaze, where visual resolution is low. It is unknown, however, whether selective spatial attention operates where the observer is already looking-that is, within the high-acuity foveola, the small yet disproportionally important rod-free region of the retina. Using new methods for precisely controlling retinal stimulation, here we show that covert attention flexibly improves and speeds up both detection and discrimination at loci only a fraction of a degree apart within the foveola. These findings reveal a surprisingly precise control of attention and its involvement in fine spatial vision. They show that the commonly studied covert shifts of attention away from the fovea are the expression of a global mechanism that exerts its action across the entire visual field.

Angular trapping of anisometric nano-objects in a fluid.

PubMed

Celebrano, Michele; Rosman, Christina; Sönnichsen, Carsten; Krishnan, Madhavi

2012-11-14

We demonstrate the ability to trap, levitate, and orient single anisometric nanoscale objects with high angular precision in a fluid. An electrostatic fluidic trap confines a spherical object at a spatial location defined by the minimum of the electrostatic system free energy. For an anisometric object and a potential well lacking angular symmetry, the system free energy can further strongly depend on the object's orientation in the trap. Engineering the morphology of the trap thus enables precise spatial and angular confinement of a single levitating nano-object, and the process can be massively parallelized. Since the physics of the trap depends strongly on the surface charge of the object, the method is insensitive to the object's dielectric function. Furthermore, levitation of the assembled objects renders them amenable to individual manipulation using externally applied optical, electrical, or hydrodynamic fields, raising prospects for reconfigurable chip-based nano-object assemblies.

Selective attention within the foveola

PubMed Central

Poletti, Martina; Rucci, Michele; Carrasco, Marisa

2018-01-01

Efficient control of attentional resources and high-acuity vision are both fundamental for survival. Shifts in visual attention are known to covertly enhance processing at locations away from the center of gaze, where visual resolution is low. It is unknown, however, whether selective spatial attention operates where the observer already looks, i.e., within the high-acuity foveola, the small, yet disproportionally important rod-free region of the retina. Using new methods for precisely controlling retinal stimulation, here we show that covert attention flexibly improves and speeds-up both detection and discrimination at loci only a fraction of a degree apart within the foveola. These findings reveal a surprisingly precise control of attention and its involvement in fine spatial vision. They show that the commonly studied covert shifts of attention away from the fovea are the expression of a global mechanism that exerts its action across the entire visual field. PMID:28805816

The Ventral Anterior Temporal Lobe has a Necessary Role in Exception Word Reading.

PubMed

Ueno, Taiji; Meteyard, Lotte; Hoffman, Paul; Murayama, Kou

2018-06-06

An influential account of reading holds that words with exceptional spelling-to-sound correspondences (e.g., PINT) are read via activation of their lexical-semantic representations, supported by the anterior temporal lobe (ATL). This account has been inconclusive because it is based on neuropsychological evidence, in which lesion-deficit relationships are difficult to localize precisely, and functional neuroimaging data, which is spatially precise but cannot demonstrate whether the ATL activity is necessary for exception word reading. To address these issues, we used a technique with good spatial specificity-repetitive transcranial magnetic stimulation (rTMS)-to demonstrate a necessary role of ATL in exception word reading. Following rTMS to left ventral ATL, healthy Japanese adults made more regularization errors in reading Japanese exception words. We successfully simulated these results in a computational model in which exception word reading was underpinned by semantic activations. The ATL is critically and selectively involved in reading exception words.

Spatially resolved photodiode response for simulating precise interferometers.

PubMed

Fernández Barranco, Germán; Tröbs, Michael; Müller, Vitali; Gerberding, Oliver; Seifert, Frank; Heinzel, Gerhard

2016-08-20

Quadrant photodiodes (QPDs) are used in laser interferometry systems to simultaneously detect longitudinal displacement of test masses and angular misalignment between the two interfering beams. The latter is achieved by means of the differential wavefront sensing (DWS) technique, which provides ultra-high precision for measuring angular displacements. We have developed a setup to obtain the spatially resolved response of QPDs that, together with an extension of the simulation software IfoCAD, allows us to use the measured response in simulations and accurately predict the desired longitudinal and DWS phase observables. Three different commercial off-the-shelf QPD candidates for space-based interferometry were characterized. The measured response of one QPD was used in optical simulations. Nonuniformities in the response of the device and crosstalk between segments do not introduce significant variations in the longitudinal and DWS measurands with respect to the standard case when a uniform QPD without crosstalk is used.

Modeling Pathologic Response of Esophageal Cancer to Chemoradiation Therapy Using Spatial-Temporal {sup 18}F-FDG PET Features, Clinical Parameters, and Demographics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Hao; Tan, Shan; Department of Control Science and Engineering, Huazhong University of Science and Technology, Wuhan

2014-01-01

Purpose: To construct predictive models using comprehensive tumor features for the evaluation of tumor response to neoadjuvant chemoradiation therapy (CRT) in patients with esophageal cancer. Methods and Materials: This study included 20 patients who underwent trimodality therapy (CRT + surgery) and underwent {sup 18}F-fluorodeoxyglucose (FDG) positron emission tomography/computed tomography (PET/CT) both before and after CRT. Four groups of tumor features were examined: (1) conventional PET/CT response measures (eg, standardized uptake value [SUV]{sub max}, tumor diameter); (2) clinical parameters (eg, TNM stage, histology) and demographics; (3) spatial-temporal PET features, which characterize tumor SUV intensity distribution, spatial patterns, geometry, and associated changesmore » resulting from CRT; and (4) all features combined. An optimal feature set was identified with recursive feature selection and cross-validations. Support vector machine (SVM) and logistic regression (LR) models were constructed for prediction of pathologic tumor response to CRT, cross-validations being used to avoid model overfitting. Prediction accuracy was assessed by area under the receiver operating characteristic curve (AUC), and precision was evaluated by confidence intervals (CIs) of AUC. Results: When applied to the 4 groups of tumor features, the LR model achieved AUCs (95% CI) of 0.57 (0.10), 0.73 (0.07), 0.90 (0.06), and 0.90 (0.06). The SVM model achieved AUCs (95% CI) of 0.56 (0.07), 0.60 (0.06), 0.94 (0.02), and 1.00 (no misclassifications). With the use of spatial-temporal PET features combined with conventional PET/CT measures and clinical parameters, the SVM model achieved very high accuracy (AUC 1.00) and precision (no misclassifications)—results that were significantly better than when conventional PET/CT measures or clinical parameters and demographics alone were used. For groups with many tumor features (groups 3 and 4), the SVM model achieved significantly higher accuracy than did the LR model. Conclusions: The SVM model that used all features including spatial-temporal PET features accurately and precisely predicted pathologic tumor response to CRT in esophageal cancer.« less

A next generation altimeter for mapping the sea surface height variability: opportunities and challenges

NASA Astrophysics Data System (ADS)

Fu, Lee-Lueng; Morrow, Rosemary

2016-07-01

The global observations of the sea surface height (SSH) have revolutionized oceanography since the beginning of precision radar altimetry in the early 1990s. For the first time we have continuous records of SSH with spatial and temporal sampling for detecting the global mean sea level rise, the waxing and waning of El Niño, and the ocean circulation from gyres to ocean eddies. The limit of spatial resolution of the present constellation of radar altimeters in mapping SSH variability is approaching 100 km (in wavelength) with 3 or more simultaneous altimetric satellites in orbit. At scales shorter than 100 km, the circulation contains substantial amount of kinetic energy in currents, eddies and fronts that are responsible for the stirring and mixing of the ocean, especially from the vertical exchange of the upper ocean with the deep. A mission currently in development will use the technique of radar interferometry for making high-resolution measurement of the height of water over the ocean as well as on land. It is called Surface Water and Ocean Topography (SWOT), which is a joint mission of US NASA and French CNES, with contributions from Canada and UK. SWOT promises the detection of SSH at scales approaching 15 km, depending on the sea state. SWOT will make SSH measurement over a swath of 120 km with a nadir gap of 20 km in a 21-day repeat orbit. A conventional radar altimeter will provide measurement along the nadir. This is an exploratory mission with applications in oceanography and hydrology. The increased spatial resolution offers an opportunity to study ocean surface processes to address important questions about the ocean circulation. However, the limited temporal sampling poses challenges to map the evolution of the ocean variability that changes rapidly at the small scales. The measurement technique and the development of the mission will be presented with emphasis on its science program with outlook on the opportunities and challenges.

Sensitivity encoded silicon photomultiplier--a new sensor for high-resolution PET-MRI.

PubMed

Schulz, Volkmar; Berker, Yannick; Berneking, Arne; Omidvari, Negar; Kiessling, Fabian; Gola, Alberto; Piemonte, Claudio

2013-07-21

Detectors for simultaneous positron emission tomography and magnetic resonance imaging in particular with sub-mm spatial resolution are commonly composed of scintillator crystal arrays, readout via arrays of solid state sensors, such as avalanche photo diodes (APDs) or silicon photomultipliers (SiPMs). Usually a light guide between the crystals and the sensor is used to enable the identification of crystals which are smaller than the sensor elements. However, this complicates crystal identification at the gaps and edges of the sensor arrays. A solution is to use as many sensors as crystals with a direct coupling, which unfortunately increases the complexity and power consumption of the readout electronics. Since 1997, position-sensitive APDs have been successfully used to identify sub-mm crystals. Unfortunately, these devices show a limitation in their time resolution and a degradation of spatial resolution when placed in higher magnetic fields. To overcome these limitations, this paper presents a new sensor concept that extends conventional SiPMs by adding position information via the spatial encoding of the channel sensitivity. The concept allows a direct coupling of high-resolution crystal arrays to the sensor with a reduced amount of readout channels. The theory of sensitivity encoding is detailed and linked to compressed sensing to compute unique sparse solutions. Two devices have been designed using one- and two-dimensional linear sensitivity encoding with eight and four readout channels, respectively. Flood histograms of both devices show the capability to precisely identify all 4 × 4 LYSO crystals with dimensions of 0.93 × 0.93 × 10 mm(3). For these crystals, the energy and time resolution (MV ± SD) of the devices with one (two)-dimensional encoding have been measured to be 12.3 · (1 ± 0.047)% (13.7 · (1 ± 0.047)%) around 511 keV with a paired coincidence time resolution (full width at half maximum) of 462 · (1 ± 0.054) ps (452 · (1 ± 0.078) ps).

Sensitivity encoded silicon photomultiplier—a new sensor for high-resolution PET-MRI

NASA Astrophysics Data System (ADS)

Schulz, Volkmar; Berker, Yannick; Berneking, Arne; Omidvari, Negar; Kiessling, Fabian; Gola, Alberto; Piemonte, Claudio

2013-07-01

Detectors for simultaneous positron emission tomography and magnetic resonance imaging in particular with sub-mm spatial resolution are commonly composed of scintillator crystal arrays, readout via arrays of solid state sensors, such as avalanche photo diodes (APDs) or silicon photomultipliers (SiPMs). Usually a light guide between the crystals and the sensor is used to enable the identification of crystals which are smaller than the sensor elements. However, this complicates crystal identification at the gaps and edges of the sensor arrays. A solution is to use as many sensors as crystals with a direct coupling, which unfortunately increases the complexity and power consumption of the readout electronics. Since 1997, position-sensitive APDs have been successfully used to identify sub-mm crystals. Unfortunately, these devices show a limitation in their time resolution and a degradation of spatial resolution when placed in higher magnetic fields. To overcome these limitations, this paper presents a new sensor concept that extends conventional SiPMs by adding position information via the spatial encoding of the channel sensitivity. The concept allows a direct coupling of high-resolution crystal arrays to the sensor with a reduced amount of readout channels. The theory of sensitivity encoding is detailed and linked to compressed sensing to compute unique sparse solutions. Two devices have been designed using one- and two-dimensional linear sensitivity encoding with eight and four readout channels, respectively. Flood histograms of both devices show the capability to precisely identify all 4 × 4 LYSO crystals with dimensions of 0.93 × 0.93 × 10 mm3. For these crystals, the energy and time resolution (MV ± SD) of the devices with one (two)-dimensional encoding have been measured to be 12.3 · (1 ± 0.047)% (13.7 · (1 ± 0.047)%) around 511 keV with a paired coincidence time resolution (full width at half maximum) of 462 · (1 ± 0.054) ps (452 · (1 ± 0.078) ps).

INFRARED TRANSMISSION SPECTROSCOPY OF THE EXOPLANETS HD 209458b AND XO-1b USING THE WIDE FIELD CAMERA-3 ON THE HUBBLE SPACE TELESCOPE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deming, Drake; Wilkins, Ashlee; McCullough, Peter

Exoplanetary transmission spectroscopy in the near-infrared using the Hubble Space Telescope (HST) NICMOS is currently ambiguous because different observational groups claim different results from the same data, depending on their analysis methodologies. Spatial scanning with HST/WFC3 provides an opportunity to resolve this ambiguity. We here report WFC3 spectroscopy of the giant planets HD 209458b and XO-1b in transit, using spatial scanning mode for maximum photon-collecting efficiency. We introduce an analysis technique that derives the exoplanetary transmission spectrum without the necessity of explicitly decorrelating instrumental effects, and achieves nearly photon-limited precision even at the high flux levels collected in spatial scanmore » mode. Our errors are within 6% (XO-1) and 26% (HD 209458b) of the photon-limit at a resolving power of {lambda}/{delta}{lambda} {approx} 70, and are better than 0.01% per spectral channel. Both planets exhibit water absorption of approximately 200 ppm at the water peak near 1.38 {mu}m. Our result for XO-1b contradicts the much larger absorption derived from NICMOS spectroscopy. The weak water absorption we measure for HD 209458b is reminiscent of the weakness of sodium absorption in the first transmission spectroscopy of an exoplanet atmosphere by Charbonneau et al. Model atmospheres having uniformly distributed extra opacity of 0.012 cm{sup 2} g{sup -1} account approximately for both our water measurement and the sodium absorption. Our results for HD 209458b support the picture advocated by Pont et al. in which weak molecular absorptions are superposed on a transmission spectrum that is dominated by continuous opacity due to haze and/or dust. However, the extra opacity needed for HD 209458b is grayer than for HD 189733b, with a weaker Rayleigh component.« less

Infrared Transmission Spectroscopy of the Exoplanets HD 209458b and XO-1b Using the Wide Field Camera-3 on the Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Deming, Drake; Wilkins, Ashlee; McCullough, Peter; Burrows, Adam; Fortney, Jonathan J.; Agol, Eric; Dobbs-Dixon, Ian; Madhusudhan, Nikku; Crouzet, Nicolas; Desert, Jean-Michel; Gilliland, Ronald L.; Haynes, Korey; Knutson, Heather A.; Line, Michael; Magic, Zazralt; Mandell, Avi M.; Ranjan, Sukrit; Charbonneau, David; Clampin, Mark; Seager, Sara; Showman, Adam P.

2013-09-01

Exoplanetary transmission spectroscopy in the near-infrared using the Hubble Space Telescope (HST) NICMOS is currently ambiguous because different observational groups claim different results from the same data, depending on their analysis methodologies. Spatial scanning with HST/WFC3 provides an opportunity to resolve this ambiguity. We here report WFC3 spectroscopy of the giant planets HD 209458b and XO-1b in transit, using spatial scanning mode for maximum photon-collecting efficiency. We introduce an analysis technique that derives the exoplanetary transmission spectrum without the necessity of explicitly decorrelating instrumental effects, and achieves nearly photon-limited precision even at the high flux levels collected in spatial scan mode. Our errors are within 6% (XO-1) and 26% (HD 209458b) of the photon-limit at a resolving power of λ/δλ ~ 70, and are better than 0.01% per spectral channel. Both planets exhibit water absorption of approximately 200 ppm at the water peak near 1.38 μm. Our result for XO-1b contradicts the much larger absorption derived from NICMOS spectroscopy. The weak water absorption we measure for HD 209458b is reminiscent of the weakness of sodium absorption in the first transmission spectroscopy of an exoplanet atmosphere by Charbonneau et al. Model atmospheres having uniformly distributed extra opacity of 0.012 cm2 g-1 account approximately for both our water measurement and the sodium absorption. Our results for HD 209458b support the picture advocated by Pont et al. in which weak molecular absorptions are superposed on a transmission spectrum that is dominated by continuous opacity due to haze and/or dust. However, the extra opacity needed for HD 209458b is grayer than for HD 189733b, with a weaker Rayleigh component.

Lanthanide‐Doped Upconversion Nanoparticles: Emerging Intelligent Light‐Activated Drug Delivery Systems

PubMed Central

Bagheri, Ali; Arandiyan, Hamidreza

2016-01-01

The development of drug delivery systems (DDSs) using near infrared (NIR) light and upconversion nanoparticles (UCNPs) has generated intensive interest over the past five years. These NIR‐initiated DDSs not only offer a high degree of spatial and temporal determination of therapeutic release but also provide precise control over the released dosage. Furthermore, these nanoplatforms confer several advantages over conventional light‐based DDSs—NIR offers better tissue penetration depth and a reduced risk of cellular photo‐damage caused by exposure to light at high‐energy wavelengths (e.g., ultraviolet light, <400 nm). The development of DDSs that can be activated by low intensity NIR illumination is highly desirable to avoid exposing living tissues to excessive heat that can limit the in vivo application of these DDSs. This encompasses research in three directions: (i) enhancing the quantum yield of the UCNPs; (ii) incorporation of photo‐responsive materials with red‐shifted absorptions into the UCNPs; and (iii) tuning the UCNPs excitation wavelength. This review focuses on recent advances in the development of NIR‐initiated DDS, with emphasis on the use of photo‐responsive compounds and polymeric materials conjugated onto UCNPs. The challenges that limit UCNPs clinical applications, alongside with the aforementioned techniques that have emerged to overcome these limitations, are highlighted. PMID:27818904

Quantitative Live-Cell Confocal Imaging of 3D Spheroids in a High-Throughput Format.

PubMed

Leary, Elizabeth; Rhee, Claire; Wilks, Benjamin T; Morgan, Jeffrey R

2018-06-01

Accurately predicting the human response to new compounds is critical to a wide variety of industries. Standard screening pipelines (including both in vitro and in vivo models) often lack predictive power. Three-dimensional (3D) culture systems of human cells, a more physiologically relevant platform, could provide a high-throughput, automated means to test the efficacy and/or toxicity of novel substances. However, the challenge of obtaining high-magnification, confocal z stacks of 3D spheroids and understanding their respective quantitative limitations must be overcome first. To address this challenge, we developed a method to form spheroids of reproducible size at precise spatial locations across a 96-well plate. Spheroids of variable radii were labeled with four different fluorescent dyes and imaged with a high-throughput confocal microscope. 3D renderings of the spheroid had a complex bowl-like appearance. We systematically analyzed these confocal z stacks to determine the depth of imaging and the effect of spheroid size and dyes on quantitation. Furthermore, we have shown that this loss of fluorescence can be addressed through the use of ratio imaging. Overall, understanding both the limitations of confocal imaging and the tools to correct for these limits is critical for developing accurate quantitative assays using 3D spheroids.

Mesh-based phase contrast Fourier transform imaging

NASA Astrophysics Data System (ADS)

Tahir, Sajjad; Bashir, Sajid; MacDonald, C. A.; Petruccelli, Jonathan C.

2017-04-01

Traditional x-ray radiography is limited by low attenuation contrast in materials of low electron density. Phase contrast imaging offers the potential to improve the contrast between such materials, but due to the requirements on the spatial coherence of the x-ray beam, practical implementation of such systems with tabletop (i.e. non-synchrotron) sources has been limited. One phase imaging technique employs multiple fine-pitched gratings. However, the strict manufacturing tolerances and precise alignment requirements have limited the widespread adoption of grating-based techniques. In this work, we have investigated a recently developed technique that utilizes a single grid of much coarser pitch. Our system consisted of a low power 100 μm spot Mo source, a CCD with 22 μm pixel pitch, and either a focused mammography linear grid or a stainless steel woven mesh. Phase is extracted from a single image by windowing and comparing data localized about harmonics of the mesh in the Fourier domain. The effects on the diffraction phase contrast and scattering amplitude images of varying grid types and periods, and of varying the width of the window function used to separate the harmonics were investigated. Using the wire mesh, derivatives of the phase along two orthogonal directions were obtained and combined to form improved phase contrast images.

Breaking resolution limits in ultrafast electron diffraction and microscopy.

PubMed

Baum, Peter; Zewail, Ahmed H

2006-10-31

Ultrafast electron microscopy and diffraction are powerful techniques for the study of the time-resolved structures of molecules, materials, and biological systems. Central to these approaches is the use of ultrafast coherent electron packets. The electron pulses typically have an energy of 30 keV for diffraction and 100-200 keV for microscopy, corresponding to speeds of 33-70% of the speed of light. Although the spatial resolution can reach the atomic scale, the temporal resolution is limited by the pulse width and by the difference in group velocities of electrons and the light used to initiate the dynamical change. In this contribution, we introduce the concept of tilted optical pulses into diffraction and imaging techniques and demonstrate the methodology experimentally. These advances allow us to reach limits of time resolution down to regimes of a few femtoseconds and, possibly, attoseconds. With tilted pulses, every part of the sample is excited at precisely the same time as when the electrons arrive at the specimen. Here, this approach is demonstrated for the most unfavorable case of ultrafast crystallography. We also present a method for measuring the duration of electron packets by autocorrelating electron pulses in free space and without streaking, and we discuss the potential of tilting the electron pulses themselves for applications in domains involving nuclear and electron motions.

Achieving the Heisenberg limit in quantum metrology using quantum error correction.

PubMed

Zhou, Sisi; Zhang, Mengzhen; Preskill, John; Jiang, Liang

2018-01-08

Quantum metrology has many important applications in science and technology, ranging from frequency spectroscopy to gravitational wave detection. Quantum mechanics imposes a fundamental limit on measurement precision, called the Heisenberg limit, which can be achieved for noiseless quantum systems, but is not achievable in general for systems subject to noise. Here we study how measurement precision can be enhanced through quantum error correction, a general method for protecting a quantum system from the damaging effects of noise. We find a necessary and sufficient condition for achieving the Heisenberg limit using quantum probes subject to Markovian noise, assuming that noiseless ancilla systems are available, and that fast, accurate quantum processing can be performed. When the sufficient condition is satisfied, a quantum error-correcting code can be constructed that suppresses the noise without obscuring the signal; the optimal code, achieving the best possible precision, can be found by solving a semidefinite program.

Limiting Energy Dissipation Induces Glassy Kinetics in Single-Cell High-Precision Responses

PubMed Central

Das, Jayajit

2016-01-01

Single cells often generate precise responses by involving dissipative out-of-thermodynamic-equilibrium processes in signaling networks. The available free energy to fuel these processes could become limited depending on the metabolic state of an individual cell. How does limiting dissipation affect the kinetics of high-precision responses in single cells? I address this question in the context of a kinetic proofreading scheme used in a simple model of early-time T cell signaling. Using exact analytical calculations and numerical simulations, I show that limiting dissipation qualitatively changes the kinetics in single cells marked by emergence of slow kinetics, large cell-to-cell variations of copy numbers, temporally correlated stochastic events (dynamic facilitation), and ergodicity breaking. Thus, constraints in energy dissipation, in addition to negatively affecting ligand discrimination in T cells, can create a fundamental difficulty in determining single-cell kinetics from cell-population results. PMID:26958894

Probing the limits to positional information

PubMed Central

Gregor, Thomas; Tank, David W.; Wieschaus, Eric F.; Bialek, William

2008-01-01

The reproducibility and precision of biological patterning is limited by the accuracy with which concentration profiles of morphogen molecules can be established and read out by their targets. We consider four measures of precision for the Bicoid morphogen in the Drosophila embryo: The concentration differences that distinguish neighboring cells, the limits set by the random arrival of Bicoid molecules at their targets (which depends on absolute concentration), the noise in readout of Bicoid by the activation of Hunchback, and the reproducibility of Bicoid concentration at corresponding positions in multiple embryos. We show, through a combination of different experiments, that all of these quantities are ~10%. This agreement among different measures of accuracy indicates that the embryo is not faced with noisy input signals and readout mechanisms; rather the system exerts precise control over absolute concentrations and responds reliably to small concentration differences, approaching the limits set by basic physical principles. PMID:17632062

Small worlds in space: Synchronization, spatial and relational modularity

NASA Astrophysics Data System (ADS)

Brede, M.

2010-06-01

In this letter we investigate networks that have been optimized to realize a trade-off between enhanced synchronization and cost of wire to connect the nodes in space. Analyzing the evolved arrangement of nodes in space and their corresponding network topology, a class of small-world networks characterized by spatial and network modularity is found. More precisely, for low cost of wire optimal configurations are characterized by a division of nodes into two spatial groups with maximum distance from each other, whereas network modularity is low. For high cost of wire, the nodes organize into several distinct groups in space that correspond to network modules connected on a ring. In between, spatially and relationally modular small-world networks are found.

Characterizing the Effects of Low Order Perturbations on Geodetic Satellite Precision Orbit Determination

DTIC Science & Technology

2015-08-07

Journal of Geodesy , Vol. 72, No. 6, 1998, pp. 333–342. [19] “Etalon-1, and -2,” http://ilrs.gsfc.nasa.gov/missions/satellite_missions...current_missions/g129_general.html, 2012. [24] L. Kanner and Associates, “Translation of ’Le satellite de geodesie ’Starlette’,’ Groupe de Recherches...de Geodesie Spatiale, Centre National d’Etudes Spatiales, Bretigny-sur-Orge, France, Report, 1974, 25 pp,” National Aeronautics and Space

AgBufferBuilder: A geographic information system (GIS) tool for precision design and performance assessment of filter strips

Treesearch

M. G. Dosskey; S. Neelakantan; T. G. Mueller; T. Kellerman; M. J. Helmers; E. Rienzi

2015-01-01

Spatially nonuniform runoif reduces the water qua1iry perfortnance of constant- width filter strips. A geographic inlormation system (Gls)-based tool was developed and tested that ernploys terrain analysis to account lor spatially nonuniform runoffand produce more ellbctive filter strip designs.The computer program,AgBufTerBuilder, runs with ATcGIS versions 10.0 and 10...

Micro axial tomography: A miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy

NASA Astrophysics Data System (ADS)

Staier, Florian; Eipel, Heinz; Matula, Petr; Evsikov, Alexei V.; Kozubek, Michal; Cremer, Christoph; Hausmann, Michael

2011-09-01

With the development of novel fluorescence techniques, high resolution light microscopy has become a challenging technique for investigations of the three-dimensional (3D) micro-cosmos in cells and sub-cellular components. So far, all fluorescence microscopes applied for 3D imaging in biosciences show a spatially anisotropic point spread function resulting in an anisotropic optical resolution or point localization precision. To overcome this shortcoming, micro axial tomography was suggested which allows object tilting on the microscopic stage and leads to an improvement in localization precision and spatial resolution. Here, we present a miniaturized device which can be implemented in a motor driven microscope stage. The footprint of this device corresponds to a standard microscope slide. A special glass fiber can manually be adjusted in the object space of the microscope lens. A stepwise fiber rotation can be controlled by a miniaturized stepping motor incorporated into the device. By means of a special mounting device, test particles were fixed onto glass fibers, optically localized with high precision, and automatically rotated to obtain views from different perspective angles under which distances of corresponding pairs of objects were determined. From these angle dependent distance values, the real 3D distance was calculated with a precision in the ten nanometer range (corresponding here to an optical resolution of 10-30 nm) using standard microscopic equipment. As a proof of concept, the spindle apparatus of a mature mouse oocyte was imaged during metaphase II meiotic arrest under different perspectives. Only very few images registered under different rotation angles are sufficient for full 3D reconstruction. The results indicate the principal advantage of the micro axial tomography approach for many microscopic setups therein and also those of improved resolutions as obtained by high precision localization determination.

Force-Mediating Magnetic Nanoparticles to Engineer Neuronal Cell Function

PubMed Central

Gahl, Trevor J.; Kunze, Anja

2018-01-01

Cellular processes like membrane deformation, cell migration, and transport of organelles are sensitive to mechanical forces. Technically, these cellular processes can be manipulated through operating forces at a spatial precision in the range of nanometers up to a few micrometers through chaperoning force-mediating nanoparticles in electrical, magnetic, or optical field gradients. But which force-mediating tool is more suitable to manipulate cell migration, and which, to manipulate cell signaling? We review here the differences in forces sensation to control and engineer cellular processes inside and outside the cell, with a special focus on neuronal cells. In addition, we discuss technical details and limitations of different force-mediating approaches and highlight recent advancements of nanomagnetics in cell organization, communication, signaling, and intracellular trafficking. Finally, we give suggestions about how force-mediating nanoparticles can be used to our advantage in next-generation neurotherapeutic devices. PMID:29867315

Landscape capability predicts upland game bird abundance and occurrence

USGS Publications Warehouse

Loman, Zachary G.; Blomberg, Erik J.; DeLuca, William; Harrison, Daniel J.; Loftin, Cyndy; Wood, Petra B.

2017-01-01

Landscape capability (LC) models are a spatial tool with potential applications in conservation planning. We used survey data to validate LC models as predictors of occurrence and abundance at broad and fine scales for American woodcock (Scolopax minor) and ruffed grouse (Bonasa umbellus). Landscape capability models were reliable predictors of occurrence but were less indicative of relative abundance at route (11.5–14.6 km) and point scales (0.5–1 km). As predictors of occurrence, LC models had high sensitivity (0.71–0.93) and were accurate (0.71–0.88) and precise (0.88 and 0.92 for woodcock and grouse, respectively). Models did not predict point-scale abundance independent of the ability to predict occurrence of either species. The LC models are useful predictors of patterns of occurrences in the northeastern United States, but they have limited utility as predictors of fine-scale or route-specific abundances. 

Templated Solid-State Dewetting of Thin Silicon Films.

PubMed

Naffouti, Meher; David, Thomas; Benkouider, Abdelmalek; Favre, Luc; Delobbe, Anne; Ronda, Antoine; Berbezier, Isabelle; Abbarchi, Marco

2016-11-01

Thin film dewetting can be efficiently exploited for the implementation of functionalized surfaces over very large scales. Although the formation of sub-micrometer sized crystals via solid-state dewetting represents a viable method for the fabrication of quantum dots and optical meta-surfaces, there are several limitations related to the intrinsic features of dewetting in a crystalline medium. Disordered spatial organization, size, and shape fluctuations are relevant issues not properly addressed so far. This study reports on the deterministic nucleation and precise positioning of Si- and SiGe-based nanocrystals by templated solid-state dewetting of thin silicon films. The dewetting dynamics is guided by pattern size and shape taking full control over number, size, shape, and relative position of the particles (islands dimensions and relative distances are in the hundreds nm range and fluctuate ≈11% for the volumes and ≈5% for the positioning). © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

The Quantum Cheshire Cat effect: Theoretical basis and observational implications

NASA Astrophysics Data System (ADS)

Duprey, Q.; Kanjilal, S.; Sinha, U.; Home, D.; Matzkin, A.

2018-04-01

The Quantum Cheshire Cat (QCC) is an effect introduced recently within the Weak Measurements framework. The main feature of the QCC effect is that a property of a quantum particle appears to be spatially separated from its position. The status of this effect has however remained unclear, as claims of experimental observation of the QCC have been disputed by strong criticism of the experimental as well as the theoretical aspects of the effect. In this paper we clarify in what precise sense the QCC can be regarded as an unambiguous consequence of the standard quantum mechanical formalism applied to describe quantum pointers weakly coupled to a system. In light of this clarification, the raised criticisms of the QCC effect are rebutted. We further point out that the limitations of the experiments performed to date imply that a loophole-free experimental demonstration of the QCC has not yet been achieved.

Multifunctional-layered materials for creating membrane-restricted nanodomains and nanoscale imaging

NASA Astrophysics Data System (ADS)

Srinivasan, P.

2016-01-01

Experimental platform that allows precise spatial positioning of biomolecules with an exquisite control at nanometer length scales is a valuable tool to study the molecular mechanisms of membrane bound signaling. Using micromachined thin film gold (Au) in layered architecture, it is possible to add both optical and biochemical functionalities in in vitro. Towards this goal, here, I show that docking of complementary DNA tethered giant phospholiposomes on Au surface can create membrane-restricted nanodomains. These nanodomains are critical features to dissect molecular choreography of membrane signaling complexes. The excited surface plasmon resonance modes of Au allow label-free imaging at diffraction-limited resolution of stably docked DNA tethered phospholiposomes, and lipid-detergent bicelle structures. Such multifunctional building block enables realizing rigorously controlled in vitro set-up to model membrane anchored biological signaling, besides serving as an optical tool for nanoscale imaging.

Force-Mediating Magnetic Nanoparticles to Engineer Neuronal Cell Function.

PubMed

Gahl, Trevor J; Kunze, Anja

2018-01-01

Cellular processes like membrane deformation, cell migration, and transport of organelles are sensitive to mechanical forces. Technically, these cellular processes can be manipulated through operating forces at a spatial precision in the range of nanometers up to a few micrometers through chaperoning force-mediating nanoparticles in electrical, magnetic, or optical field gradients. But which force-mediating tool is more suitable to manipulate cell migration, and which, to manipulate cell signaling? We review here the differences in forces sensation to control and engineer cellular processes inside and outside the cell, with a special focus on neuronal cells. In addition, we discuss technical details and limitations of different force-mediating approaches and highlight recent advancements of nanomagnetics in cell organization, communication, signaling, and intracellular trafficking. Finally, we give suggestions about how force-mediating nanoparticles can be used to our advantage in next-generation neurotherapeutic devices.