Adaptive kernel function using line transect sampling

NASA Astrophysics Data System (ADS)

Albadareen, Baker; Ismail, Noriszura

2018-04-01

The estimation of f(0) is crucial in the line transect method which is used for estimating population abundance in wildlife survey's. The classical kernel estimator of f(0) has a high negative bias. Our study proposes an adaptation in the kernel function which is shown to be more efficient than the usual kernel estimator. A simulation study is adopted to compare the performance of the proposed estimators with the classical kernel estimators.

Line Intercept (LI)

Treesearch

John F. Caratti

2006-01-01

The FIREMON Line Intercept (LI) method is used to assess changes in plant species cover for a macroplot. This method uses multiple line transects to sample within plot variation and quantify statistically valid changes in plant species cover and height over time. This method is suited for most forest and rangeland communities, but is especially useful for sampling...

Marine tunicates from Sangkarang Archipelago Indonesia: recent finding and bio-prospecting

NASA Astrophysics Data System (ADS)

Litaay, Magdalena

2018-03-01

Tunicate belongs to urochordata that inhabit benthic area of coral reefs. This paper attempts to compile result of several studies on diversity of marine tunicates from Sangkarang Archipelago of South Sulawesi Indonesia. Method for tunicates sample collection was line transect method that applied at two 3 and 7 m depth. A 50 m line transect was applied parallel to a shore line in each depth and was done in duplicate. A 2.5 m plot was places side by side of transect, in which all tunicate inside plot was counted, identified, and photographed, respectively. Tunicates identification was based on morphological characteristics. The latest finding shows that eighteen species of tunicates were recorded in Samalona waters as also the same number of species in Barrang Caddi waters. The result from this finding was compared to previous studies done at other part of Sangkarang area. This study concluded that this archipelago is rich in tunicates and these resources can be utilized for various purposes. Bioprospect of marine tunicates is also discus in the present study.

Some comments on Anderson and Pospahala's correction of bias in line transect sampling

USGS Publications Warehouse

Anderson, D.R.; Burnham, K.P.; Chain, B.R.

1980-01-01

ANDERSON and POSPAHALA (1970) investigated the estimation of wildlife population size using the belt or line transect sampling method and devised a correction for bias, thus leading to an estimator with interesting characteristics. This work was given a uniform mathematical framework in BURNHAM and ANDERSON (1976). In this paper we show that the ANDERSON-POSPAHALA estimator is optimal in the sense of being the (unique) best linear unbiased estimator within the class of estimators which are linear combinations of cell frequencies, provided certain assumptions are met.

Double-observer line transect surveys with Markov-modulated Poisson process models for animal availability.

PubMed

Borchers, D L; Langrock, R

2015-12-01

We develop maximum likelihood methods for line transect surveys in which animals go undetected at distance zero, either because they are stochastically unavailable while within view or because they are missed when they are available. These incorporate a Markov-modulated Poisson process model for animal availability, allowing more clustered availability events than is possible with Poisson availability models. They include a mark-recapture component arising from the independent-observer survey, leading to more accurate estimation of detection probability given availability. We develop models for situations in which (a) multiple detections of the same individual are possible and (b) some or all of the availability process parameters are estimated from the line transect survey itself, rather than from independent data. We investigate estimator performance by simulation, and compare the multiple-detection estimators with estimators that use only initial detections of individuals, and with a single-observer estimator. Simultaneous estimation of detection function parameters and availability model parameters is shown to be feasible from the line transect survey alone with multiple detections and double-observer data but not with single-observer data. Recording multiple detections of individuals improves estimator precision substantially when estimating the availability model parameters from survey data, and we recommend that these data be gathered. We apply the methods to estimate detection probability from a double-observer survey of North Atlantic minke whales, and find that double-observer data greatly improve estimator precision here too. © 2015 The Authors Biometrics published by Wiley Periodicals, Inc. on behalf of International Biometric Society.

Design unbiased estimation in line intersect sampling using segmented transects

Treesearch

David L.R. Affleck; Timothy G. Gregoire; Harry T. Valentine; Harry T. Valentine

2005-01-01

In many applications of line intersect sampling. transects consist of multiple, connected segments in a prescribed configuration. The relationship between the transect configuration and the selection probability of a population element is illustrated and a consistent sampling protocol, applicable to populations composed of arbitrarily shaped elements, is proposed. It...

Analysis of down wood volme and percent ground cover for the Missouri Ozark forest ecosystem project

Treesearch

Laura A. Herbeck

2000-01-01

Volume and percent ground cover of down wood were estimated on the MOFEP sites from two separate sampling inventories, line transects and fixed-area plots. Line transects were used to sample down wood in the 1990-91 and 1994-95 inventories and fixed-area plots were used in an additional inventory in 1995. Line transect inventories estimated a range in ground cover...

A parametric generalization of the Hayne estimator for line transect sampling

USGS Publications Warehouse

Burnham, Kenneth P.

1979-01-01

The Hayne model for line transect sampling is generalized by using an elliptical (rather than circular) flushing model for animal detection. By assuming the ration of major and minor axes lengths is constant for all animals, a model results which allows estimation of population density based directly upon sighting distances and sighting angles. The derived estimator of animal density is a generalization of the Hayne estimator for line transect sampling.

Methods for the quantification of coarse woody debris and an examination of its spatial patterning: A study from the Tenderfoot Creek Experimental Forest, MT

Treesearch

Paul B. Alaback; Duncan C. Lutes

1997-01-01

Methods for the quantification of coarse woody debris volume and the description of spatial patterning were studied in the Tenderfoot Creek Experimental Forest, Montana. The line transect method was found to be an accurate, unbiased estimator of down debris volume (> 10cm diameter) on 1/4 hectare fixed-area plots, when perpendicular lines were used. The Fischer...

Do sampling methods differ in their utility for ecological monitoring? Comparison of line-point intercept, grid-point intercept, and ocular estimate methods

USDA-ARS?s Scientific Manuscript database

This study compared the utility of three sampling methods for ecological monitoring based on: interchangeability of data (rank correlations), precision (coefficient of variation), cost (minutes/transect), and potential of each method to generate multiple indicators. Species richness and foliar cover...

Log sampling methods and software for stand and landscape analyses.

Treesearch

Lisa J. Bate; Torolf R. Torgersen; Michael J. Wisdom; Edward O. Garton; Shawn C. Clabough

2008-01-01

We describe methods for efficient, accurate sampling of logs at landscape and stand scales to estimate density, total length, cover, volume, and weight. Our methods focus on optimizing the sampling effort by choosing an appropriate sampling method and transect length for specific forest conditions and objectives. Sampling methods include the line-intersect method and...

Edge Effects in Line Intersect Sampling With

Treesearch

David L. R. Affleck; Timothy G. Gregoire; Harry T. Valentine

2005-01-01

Transects consisting of multiple, connected segments with a prescribed configuration are commonly used in ecological applications of line intersect sampling. The transect configuration has implications for the probability with which population elements are selected and for how the selection probabilities can be modified by the boundary of the tract being sampled. As...

Maximum ikelihood estimation for the double-count method with independent observers

USGS Publications Warehouse

Manly, Bryan F.J.; McDonald, Lyman L.; Garner, Gerald W.

1996-01-01

Data collected under a double-count protocol during line transect surveys were analyzed using new maximum likelihood methods combined with Akaike's information criterion to provide estimates of the abundance of polar bear (Ursus maritimus Phipps) in a pilot study off the coast of Alaska. Visibility biases were corrected by modeling the detection probabilities using logistic regression functions. Independent variables that influenced the detection probabilities included perpendicular distance of bear groups from the flight line and the number of individuals in the groups. A series of models were considered which vary from (1) the simplest, where the probability of detection was the same for both observers and was not affected by either distance from the flight line or group size, to (2) models where probability of detection is different for the two observers and depends on both distance from the transect and group size. Estimation procedures are developed for the case when additional variables may affect detection probabilities. The methods are illustrated using data from the pilot polar bear survey and some recommendations are given for design of a survey over the larger Chukchi Sea between Russia and the United States.

Modeling abundance using hierarchical distance sampling

USGS Publications Warehouse

Royle, Andy; Kery, Marc

2016-01-01

In this chapter, we provide an introduction to classical distance sampling ideas for point and line transect data, and for continuous and binned distance data. We introduce the conditional and the full likelihood, and we discuss Bayesian analysis of these models in BUGS using the idea of data augmentation, which we discussed in Chapter 7. We then extend the basic ideas to the problem of hierarchical distance sampling (HDS), where we have multiple point or transect sample units in space (or possibly in time). The benefit of HDS in practice is that it allows us to directly model spatial variation in population size among these sample units. This is a preeminent concern of most field studies that use distance sampling methods, but it is not a problem that has received much attention in the literature. We show how to analyze HDS models in both the unmarked package and in the BUGS language for point and line transects, and for continuous and binned distance data. We provide a case study of HDS applied to a survey of the island scrub-jay on Santa Cruz Island, California.

Point Intercept (PO)

Treesearch

John F. Caratti

2006-01-01

The FIREMON Point Intercept (PO) method is used to assess changes in plant species cover or ground cover for a macroplot. This method uses a narrow diameter sampling pole or sampling pins, placed at systematic intervals along line transects to sample within plot variation and quantify statistically valid changes in plant species cover and height over time. Plant...

Effects of observers using different methods upon the total population estimates of two resident island birds

Treesearch

Sheila Conant; Mark S. Collins; C. John Ralph

1981-01-01

During a 5-week study of the Nihoa Millerbird and Nihoa Finch, we censused birds using these techniques: two line transect methods, a variable-distance circular plot method, and spot-mapping of territories (millerbirds only). Densities derived from these methods varied greatly. Due to differences in behavior, it appeared that the two species reacted differently to the...

The densiometer for measurement of crown intercept above a line transect.

Treesearch

J. Edward Dealy

1960-01-01

An adaptation in the use of Lemmon's spherical densiometer, has been developed to measure low overstory crown foliage as intercept above a line transect. This adaptation provides added information for the evaluation of ecological relationships within and among plant communities where some species are too low for overstory density estimates and too high for direct...

Bird Radar Validation in the Field by Time-Referencing Line-Transect Surveys

PubMed Central

Dokter, Adriaan M.; Baptist, Martin J.; Ens, Bruno J.; Krijgsveld, Karen L.; van Loon, E. Emiel

2013-01-01

Track-while-scan bird radars are widely used in ornithological studies, but often the precise detection capabilities of these systems are unknown. Quantification of radar performance is essential to avoid observational biases, which requires practical methods for validating a radar’s detection capability in specific field settings. In this study a method to quantify the detection capability of a bird radar is presented, as well a demonstration of this method in a case study. By time-referencing line-transect surveys, visually identified birds were automatically linked to individual tracks using their transect crossing time. Detection probabilities were determined as the fraction of the total set of visual observations that could be linked to radar tracks. To avoid ambiguities in assigning radar tracks to visual observations, the observer’s accuracy in determining a bird’s transect crossing time was taken into account. The accuracy was determined by examining the effect of a time lag applied to the visual observations on the number of matches found with radar tracks. Effects of flight altitude, distance, surface substrate and species size on the detection probability by the radar were quantified in a marine intertidal study area. Detection probability varied strongly with all these factors, as well as species-specific flight behaviour. The effective detection range for single birds flying at low altitude for an X-band marine radar based system was estimated at ∼1.5 km. Within this range the fraction of individual flying birds that were detected by the radar was 0.50±0.06 with a detection bias towards higher flight altitudes, larger birds and high tide situations. Besides radar validation, which we consider essential when quantification of bird numbers is important, our method of linking radar tracks to ground-truthed field observations can facilitate species-specific studies using surveillance radars. The methodology may prove equally useful for optimising tracking algorithms. PMID:24066103

Bird radar validation in the field by time-referencing line-transect surveys.

PubMed

Dokter, Adriaan M; Baptist, Martin J; Ens, Bruno J; Krijgsveld, Karen L; van Loon, E Emiel

2013-01-01

Track-while-scan bird radars are widely used in ornithological studies, but often the precise detection capabilities of these systems are unknown. Quantification of radar performance is essential to avoid observational biases, which requires practical methods for validating a radar's detection capability in specific field settings. In this study a method to quantify the detection capability of a bird radar is presented, as well a demonstration of this method in a case study. By time-referencing line-transect surveys, visually identified birds were automatically linked to individual tracks using their transect crossing time. Detection probabilities were determined as the fraction of the total set of visual observations that could be linked to radar tracks. To avoid ambiguities in assigning radar tracks to visual observations, the observer's accuracy in determining a bird's transect crossing time was taken into account. The accuracy was determined by examining the effect of a time lag applied to the visual observations on the number of matches found with radar tracks. Effects of flight altitude, distance, surface substrate and species size on the detection probability by the radar were quantified in a marine intertidal study area. Detection probability varied strongly with all these factors, as well as species-specific flight behaviour. The effective detection range for single birds flying at low altitude for an X-band marine radar based system was estimated at ~1.5 km. Within this range the fraction of individual flying birds that were detected by the radar was 0.50 ± 0.06 with a detection bias towards higher flight altitudes, larger birds and high tide situations. Besides radar validation, which we consider essential when quantification of bird numbers is important, our method of linking radar tracks to ground-truthed field observations can facilitate species-specific studies using surveillance radars. The methodology may prove equally useful for optimising tracking algorithms.

Welfare assessment in broiler farms: transect walks versus individual scoring.

PubMed

Marchewka, J; Watanabe, T T N; Ferrante, V; Estevez, I

2013-10-01

Current scientific approaches to welfare assessment in broilers are based on individual sampling that can be time consuming under field conditions. On the other hand, farmers conduct routine checks based on walks through the house to screen birds' health condition. We adapted the walks through following line transect methodology used in wildlife studies to explore their feasibility as a welfare assessment tool. The aim of this study was to compare broiler welfare assessed by individual sampling and transect walks. We evaluated 6 identically managed flocks. For individual sampling, we collected measures on 150 birds, including weight, breast dirtiness, hock and footpad dermatitis, lameness, and immobility. Transect observations were conducted by slowly walking on randomized paths within each house recording: immobility, lameness, back dirtiness, sickness, agony, and dead. Transect walks allowed detection of small variations (P < 0.003) in the prevalence of most welfare indicators considered with consistency in interobserver reliability (P ≥ 0.05). In addition, assessments across transects were highly consistent (P ≥ 0.05). Individual sampling was also sensitive to differences across houses (P < 0.01) with the exception of immobility (P = 0.783). No differences were found across sampling locations (P ≥ 0.05). However, both methods differed greatly in the frequency of the incidence of the parameters considered. For example, immobility varied from 0.2 ± 0.02% for transect walks to 4 ± 2.3% for individual sampling, whereas lameness varied between 0.8 ± 0.07% and 24.2 ± 4.7% for transect and samplings, respectively. It is possible that the transect approach may have overlooked walking deficiencies because a large number of birds were scored, although if this was the case, the consistency obtained in the scoring across observers and transects would be surprising. Differences may also be related to possibly biased individual sampling procedures, where less mobile and passive individuals may be more likely to be caught. Furthermore the procedure may cause fatigue and fear reactions reducing mobility. Current study provides new insights into constraints and advantages of broiler on-farm assessment methods, which should be considered for designing on-farm welfare assessment protocols.

Location and description of transects for ecological studies in floodplain forests of the lower Suwannee River, Florida

USGS Publications Warehouse

Lewis, L.J.; Light, H.M.; Darst, M.R.

2001-01-01

Twelve transects were established in floodplain forests along the lower Suwannee River, Florida, as the principal data collection sites for a comprehensive study conducted by the U.S. Geological Survey and the Suwannee River Water Management District from 1996 to 2001. Data collected along the 12 transects included hydrologic conditions, land-surface elevations, soils, and vegetation of floodplain forests in relation to river flow. Transect locations are marked in the field with permanent markers at approximately 30 meter intervals. Detailed descriptions of the 12 transects and their locations are provided so that they can be used for future ecological studies. Descriptions of the transects include contact information necessary for access to the property on which the transects are located, maps showing transect locations and routes from the nearest city or major road, small scale maps of each transect showing marker locations, latitude and longitude of each marker, compass bearings of each transect line and graphs showing land-surface elevations of the transect with marker locations.

Improving Aquatic Warbler Population Assessments by Accounting for Imperfect Detection

PubMed Central

Oppel, Steffen; Marczakiewicz, Piotr; Lachmann, Lars; Grzywaczewski, Grzegorz

2014-01-01

Monitoring programs designed to assess changes in population size over time need to account for imperfect detection and provide estimates of precision around annual abundance estimates. Especially for species dependent on conservation management, robust monitoring is essential to evaluate the effectiveness of management. Many bird species of temperate grasslands depend on specific conservation management to maintain suitable breeding habitat. One such species is the Aquatic Warbler (Acrocephalus paludicola), which breeds in open fen mires in Central Europe. Aquatic Warbler populations have so far been assessed using a complete survey that aims to enumerate all singing males over a large area. Because this approach provides no estimate of precision and does not account for observation error, detecting moderate population changes is challenging. From 2011 to 2013 we trialled a new line transect sampling monitoring design in the Biebrza valley, Poland, to estimate abundance of singing male Aquatic Warblers. We surveyed Aquatic Warblers repeatedly along 50 randomly placed 1-km transects, and used binomial mixture models to estimate abundances per transect. The repeated line transect sampling required 150 observer days, and thus less effort than the traditional ‘full count’ approach (175 observer days). Aquatic Warbler abundance was highest at intermediate water levels, and detection probability varied between years and was influenced by vegetation height. A power analysis indicated that our line transect sampling design had a power of 68% to detect a 20% population change over 10 years, whereas raw count data had a 9% power to detect the same trend. Thus, by accounting for imperfect detection we increased the power to detect population changes. We recommend to adopt the repeated line transect sampling approach for monitoring Aquatic Warblers in Poland and in other important breeding areas to monitor changes in population size and the effects of habitat management. PMID:24713994

Demonstration of line transect methodologies to estimate urban gray squirrel density

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hein, E.W.

1997-11-01

Because studies estimating density of gray squirrels (Sciurus carolinensis) have been labor intensive and costly, I demonstrate the use of line transect surveys to estimate gray squirrel density and determine the costs of conducting surveys to achieve precise estimates. Density estimates are based on four transacts that were surveyed five times from 30 June to 9 July 1994. Using the program DISTANCE, I estimated there were 4.7 (95% Cl = 1.86-11.92) gray squirrels/ha on the Clemson University campus. Eleven additional surveys would have decreased the percent coefficient of variation from 30% to 20% and would have cost approximately $114. Estimatingmore » urban gray squirrel density using line transect surveys is cost effective and can provide unbiased estimates of density, provided that none of the assumptions of distance sampling theory are violated.« less

The conservation value of degraded forests for agile gibbons Hylobates agilis.

PubMed

Lee, David C; Powell, Victoria J; Lindsell, Jeremy A

2015-01-01

All gibbon species are globally threatened with extinction yet conservation efforts are undermined by a lack of population and ecological data. Agile gibbons (Hylobates agilis) occur in Sumatra, Indonesia and adjacent mainland Southeast Asia. Population densities are known from four sites (three in Sumatra) while little is known about their ability to tolerate habitat degradation. We conducted a survey of agile gibbons in Harapan Rainforest, a lowland forest site in Sumatra. The area has been severely degraded by selective logging and encroachment but is now managed for ecosystem restoration. We used two survey methods: an established point count method for gibbons with some modifications, and straight line transects using auditory detections. Surveys were conducted in the three main forest types prevalent at the site: high, medium, and low canopy cover secondary forests. Mean group density estimates were higher from point counts than from line transects, and tended to be higher in less degraded forests within the study site. We consider points more time efficient and reliable than transects since detectability of gibbons was higher from points per unit effort. We recommend the additional use of Distance sampling methods to account for imperfect detection and provide other recommendations to improve surveys of gibbons. We estimate that the site holds at least 6,070 and as many as 11,360 gibbons. Our results demonstrate that degraded forests can be extremely important for the conservation of agile gibbons and that efforts to protect and restore such sites could contribute significantly to the conservation of the species. © 2014 Wiley Periodicals, Inc.

Dual-tracer method to estimate coral reef response to a plume of chemically modified seawater

NASA Astrophysics Data System (ADS)

Maclaren, J. K.; Caldeira, K.

2013-12-01

We present a new method, based on measurement of seawater samples, to estimate the response of a reef ecosystem to a plume of an additive (for example, a nutrient or other chemical). In the natural environment, where there may be natural variability in concentrations, it can be difficult to distinguish between changes in concentrations that would occur naturally and changes in concentrations that result from a chemical addition. Furthermore, in the unconfined natural environment, chemically modified water can mix with waters that have not been modified, making it difficult to distinguish between effects of dilution and effects of chemical fluxes or transformations. We present a dual-tracer method that extracts signals from observations that may be affected by both natural variability and dilution. In this dual-tracer method, a substance (in our example case, alkalinity) is added to the water in known proportion to a passive conservative tracer (in our example case, Rhodamine WT dye). The resulting plume of seawater is allowed to flow over the study site. Two transects are drawn across the plume at the front and back of the study site. If, in our example, alkalinity is plotted as a function of dye concentration for the front transect, the slope of the resulting mixing line is the ratio of alkalinity to dye in the added fluid. If a similar mixing line is measured and calculated for the back transect, the slope of this mixing line will indicate the amount of added alkalinity that remains in the water flowing out of the study site per unit of added dye. The ratio of the front and back slopes indicates the fraction of added alkalinity that was taken up by the reef. The method is demonstrated in an experiment performed on One Tree Reef (Queensland, Australia) aimed at showing that ocean acidification is already affecting coral reef growth. In an effort to chemically reverse some of the changes to seawater chemistry that have occurred over the past 200 years, we added sodium hydroxide to increase alkalinity in the plume and controlled for dilution with Rhodamine WT dye. Preliminary data will be presented and analyzed using the approach described above.

Intraocular Lens Fragmentation Using Femtosecond Laser: An In Vitro Study

PubMed Central

Bala, Chandra; Shi, Jeffrey; Meades, Kerrie

2015-01-01

Purpose: To transect intraocular lenses (IOLs) using a femtosecond laser in cadaveric human eyes. To determine the optimal in vitro settings, to detect and characterize gasses or particles generated during this process. Methods: A femtosecond laser was used to transect hydrophobic and hydrophilic acrylic lenses. The settings required to enable easy separation of the lens fragment were determined. The gasses and particles generated were analysed using gas chromatography mass spectrometer (GC-MS) and total organic carbon analyzer (TOC), respectively. Results: In vitro the IOL fragments easily separated at the lowest commercially available energy setting of 1 μJ, 8-μm spot, and 2-μm line separation. No particles were detected in the 0.5- to 900-μm range. No significant gasses or other organic breakdown by products were detected at this setting. At much higher energy levels 12 μJ (4 × 6 μm spot and line separation) significant pyrolytic products were detected, which could be harmful to the eye. In cadaveric explanted IOL capsule complex the laser pulses could be applied through the capsule to the IOL and successfully fragment the IOL. Conclusion: IOL transection is feasible with femtosecond lasers. Further in vivo animal studies are required to confirm safety. Translational Relevance: In clinical practice there are a number of large intraocular lenses that can be difficult to explant. This in-vitro study examines the possibility of transecting the lasers quickly using femtosecond lasers. If in-vivo studies are successful, then this innovation could help ophthalmic surgeons in IOL explantation. PMID:26101721

NATURAL ATTENUATION OF MTBE

EPA Science Inventory

For the case studies, the MTBE, TBA, and BTEX plume will be studied in a longitudinal transect along the center-line of the plume, and at least two transects perpendicular to ground water flow. Water samples will be analyzed for the concentration of MTBE, TBA, BTEX, methane, sulf...

Digitization of a geologic map for the Quebec-Maine-Gulf of Maine global geoscience transect

USGS Publications Warehouse

Wright, Bruce E.; Stewart, David B.

1990-01-01

The Bedrock Geologic Map of Maine was digitized and combined with digital geologic data for Quebec and the Gulf of Maine for the Quebec-Maine-Gulf of Maine Geologic Transect Project. This map is being combined with digital geophysical data to produce three-dimensional depictions of the subsurface geology and to produce cross sections of the Earth's crust. It is an essential component of a transect that stretches from the craton near Quebec City, Quebec, to the Atlantic Ocean Basin south of Georges Bank. The transect is part of the Global Geosciences Transect Project of the International Lithosphere Program. The Digital Line Graph format is used for storage of the digitized data. A coding scheme similar to that used for base category planimetric data was developed to assign numeric codes to the digitized geologic data. These codes were used to assign attributes to polygon and line features to describe rock type, age, name, tectonic setting of original deposition, mineralogy, and composition of igneous plutonic rocks, as well as faults and other linear features. The digital geologic data can be readily edited, rescaled, and reprojected. The attribute codes allow generalization and selective retrieval of the geologic features. The codes allow assignment of map colors based on age, lithology, or other attribute. The Digital Line Graph format is a general transfer format that is supported by many software vendors and is easily transferred between systems.

Mathematical models for nonparametric inferences from line transect data

USGS Publications Warehouse

Burnham, K.P.; Anderson, D.R.

1976-01-01

A general mathematical theory of line transects is develoepd which supplies a framework for nonparametric density estimation based on either right angle or sighting distances. The probability of observing a point given its right angle distance (y) from the line is generalized to an arbitrary function g(y). Given only that g(O) = 1, it is shown there are nonparametric approaches to density estimation using the observed right angle distances. The model is then generalized to include sighting distances (r). Let f(y/r) be the conditional distribution of right angle distance given sighting distance. It is shown that nonparametric estimation based only on sighting distances requires we know the transformation of r given by f(O/r).

A century of vegetation change on the Santa Rita Experimental Range

Treesearch

Mitchel P. McClaran

2003-01-01

We know more about vegetation change on the Santa Rita Experimental Range since 1903 than is known about any other 20,000-ha area in the world. This record is only possible because important techniques of measuring vegetation changes were developed on the Santa Rita, such as repeat photography and the line intercept transect method, and because they were applied often...

Can roads be used as transects for primate population surveys?.

PubMed

Hilário, Renato R; Rodrigues, Flávio H G; Chiarello, Adriano G; Mourthé, Italo

2012-01-01

Line transect distance sampling (LTDS) can be applied to either trails or roads. However, it is likely that sampling along roads might result in biased density estimates. In this paper, we compared the results obtained with LTDS applied on trails and roads for two primate species (Callithrix penicillata and Callicebus nigrifrons) to clarify whether roads are appropriate transects to estimate densities. We performed standard LTDS surveys in two nature reserves in south-eastern Brazil. Effective strip width and population density were different between trails and roads for C. penicillata, but not for C. nigrifrons. The results suggest that roads are not appropriate for use as transects in primate surveys, at least for some species. Further work is required to fully understand this issue, but in the meantime we recommend that researchers avoid using roads as transects or treat roads and trails as covariates when sampling on roads is unavoidable. Copyright © 2012 S. Karger AG, Basel.

ATLANTIC BIRDS: a data set of bird species from the Brazilian Atlantic Forest.

PubMed

Hasui, Érica; Metzger, Jean Paul; Pimentel, Rafael G; Silveira, Luís Fábio; Bovo, Alex A D A; Martensen, Alexandre C; Uezu, Alexandre; Regolin, André L; Bispo de Oliveira, Arthur Â; Gatto, Cassiano A F R; Duca, Charles; Andretti, Christian B; Banks-Leite, Cristina; Luz, Daniela; Mariz, Daniele; Alexandrino, Eduardo R; de Barros, Fabio M; Martello, Felipe; Pereira, Iolanda M D S; da Silva, José N; Ferraz, Katia M P M D B; Naka, Luciano N; Dos Anjos, Luiz; Efe, Márcio A; Pizo, Marco Aurélio; Pichorim, Mauro; Gonçalves, Maycon Sanyvan S; Cordeiro, Paulo Henrique Chaves; Dias, Rafael A; Muylaert, Renata D L; Rodrigues, Rodolpho C; da Costa, Thiago V V; Cavarzere, Vagner; Tonetti, Vinicius R; Silva, Wesley R; Jenkins, Clinton N; Galetti, Mauro; Ribeiro, Milton C

2018-02-01

South America holds 30% of the world's avifauna, with the Atlantic Forest representing one of the richest regions of the Neotropics. Here we have compiled a data set on Brazilian Atlantic Forest bird occurrence (150,423) and abundance samples (N = 832 bird species; 33,119 bird individuals) using multiple methods, including qualitative surveys, mist nets, point counts, and line transects). We used four main sources of data: museum collections, on-line databases, literature sources, and unpublished reports. The data set comprises 4,122 localities and data from 1815 to 2017. Most studies were conducted in the Florestas de Interior (1,510 localities) and Serra do Mar (1,280 localities) biogeographic sub-regions. Considering the three main quantitative methods (mist net, point count, and line transect), we compiled abundance data for 745 species in 576 communities. In the data set, the most frequent species were Basileuterus culicivorus, Cyclaris gujanensis, and Conophaga lineata. There were 71 singletons, such as Lipaugus conditus and Calyptura cristata. We suggest that this small number of records reinforces the critical situation of these taxa in the Atlantic Forest. The information provided in this data set can be used for macroecological studies and to foster conservation strategies in this biodiversity hotspot. No copyright restrictions are associated with the data set. Please cite this Data Paper if data are used in publications and teaching events. © 2017 by the Ecological Society of America.

Mathematical models for non-parametric inferences from line transect data

USGS Publications Warehouse

Burnham, K.P.; Anderson, D.R.

1976-01-01

A general mathematical theory of line transects is developed which supplies a framework for nonparametric density estimation based on either right angle or sighting distances. The probability of observing a point given its right angle distance (y) from the line is generalized to an arbitrary function g(y). Given only that g(0) = 1, it is shown there are nonparametric approaches to density estimation using the observed right angle distances. The model is then generalized to include sighting distances (r). Let f(y I r) be the conditional distribution of right angle distance given sighting distance. It is shown that nonparametric estimation based only on sighting distances requires we know the transformation of r given by f(0 I r).

Sequential sampling of ribes populations in the control of white pine blister rust (Cronartium ribicola Fischer) in California

Treesearch

Harold R. Offord

1966-01-01

Sequential sampling based on a negative binomial distribution of ribes populations required less than half the time taken by regular systematic line transect sampling in a comparison test. It gave the same control decision as the regular method in 9 of 13 field trials. A computer program that permits sequential plans to be built readily for other white pine regions is...

A Unimodal Model for Double Observer Distance Sampling Surveys.

PubMed

Becker, Earl F; Christ, Aaron M

2015-01-01

Distance sampling is a widely used method to estimate animal population size. Most distance sampling models utilize a monotonically decreasing detection function such as a half-normal. Recent advances in distance sampling modeling allow for the incorporation of covariates into the distance model, and the elimination of the assumption of perfect detection at some fixed distance (usually the transect line) with the use of double-observer models. The assumption of full observer independence in the double-observer model is problematic, but can be addressed by using the point independence assumption which assumes there is one distance, the apex of the detection function, where the 2 observers are assumed independent. Aerially collected distance sampling data can have a unimodal shape and have been successfully modeled with a gamma detection function. Covariates in gamma detection models cause the apex of detection to shift depending upon covariate levels, making this model incompatible with the point independence assumption when using double-observer data. This paper reports a unimodal detection model based on a two-piece normal distribution that allows covariates, has only one apex, and is consistent with the point independence assumption when double-observer data are utilized. An aerial line-transect survey of black bears in Alaska illustrate how this method can be applied.

Hyperspectral data analysis for estimation of foliar biochemical content along the Oregon transect

NASA Technical Reports Server (NTRS)

Johnson, Lee F.; Peterson, David L.

1991-01-01

The NASA Oregon Transect Ecosystem Research (OTTER) project completed a data acquisition phase. Data were acquired with several airborne imaging spectrometers. Included were the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) aboard the ER-2, the Advanced Solidstate Array Spectrometer (ASAS) aboard the C-130, and the Fluorescence Line Imager (FLI) and Compact Airborne Spectrographic Imager (CASI), both aboard light aircraft. In addition, Spectron visible and near-infrared data were acquired in transects across study areas from a low-altitude ultralight craft. Sunphotometer data were taken approximately coincident with each overflight for atmospheric correction of the aircraft data.

Changes in the structural properties of peripheral nerves after transection.

PubMed

Toby, E B; Meyer, B M; Schwappach, J; Alvine, G

1996-11-01

Changes in peripheral nerve structural properties after transection were measured weekly for 5 weeks in the distal stump of the sciatic nerve in 50 Sprague-Dawley rats. Each week after transection, the distal stump of the transected nerve showed increased stiffness when compared to intact nerves. Linear elastic stiffness reached a maximum at weeks 1 and 2 after transection, when the transected nerves were 15% stiffer than the contralateral control sides. Toughness was also increased and reached a maximum at week 4 with a 50% difference between values for experimental and control sides. Overall failure load was between 21% and 27% greater, peaking at week 3. An increase in stiffness of the distal stump would result in increased tension at the suture line, as the nerve gap is overcome when performing a delayed neurorraphy. These data suggest, with respect to structural properties, that an end-to-end repair should be carried out at the time of injury; after only 1 week, significant stiffness in the distal segment of the nerve developed, which should result in an increase in tension at the repair site.

Using mark-recapture distance sampling methods on line transect surveys

USGS Publications Warehouse

Burt, Louise M.; Borchers, David L.; Jenkins, Kurt J.; Marques, Tigao A

2014-01-01

Synthesis and applications. Mark–recapture DS is a widely used method for estimating animal density and abundance when detection of animals at distance zero is not certain. Two observer configurations and three statistical models are described, and it is important to choose the most appropriate model for the observer configuration and target species in question. By way of making the methods more accessible to practicing ecologists, we describe the key ideas underlying MRDS methods, the sometimes subtle differences between them, and we illustrate these by applying different kinds of MRDS method to surveys of two different target species using different survey configurations.

High Resolution Observations of Dissolved Iron Distribution Along a Coastal Offshore Transect in the Eastern North Atlantic.

NASA Astrophysics Data System (ADS)

Blain, S.; Laes, A.; Laan, P.; Achterberg, E.; de Baar, H.

2002-12-01

In order to better understand and quantify the inputs of iron from below in the water column a detailed section from the coast to offshore has been studied in the eastern North Atlantic. The section, extended from 47°36 58 N, 4°14 51 W (depth 96 m) to 46°00 00 N, 8°00 00 W (depth 4912 m). The cruise took place in March 2002, on board R/V Pelagia, as part of the European Union project IRONAGES. Fifteen stations have been sampled for dissolved iron (DFe) and nutrients analysis. Go Flo bottles mounted on a kevlar cable were used for clean seawater sampling in the water column. A torpedo fish and trace metal clean bellows pump were used for surface sampling. Sample were filtered on-line through an 0.2 μm cartridge. The DFe concentrations were measured onboard using a FIA method with on line preconcentration (8-HQ resin) and chemiluminescence detection (mean blank = 28 pM, mean limit of detection= 39 pM). The coastal stations over the shelf showed the highest concentrations of DFe. In this part of the transect, the concentration decreased from the surface to the bottom. Maxima (1-2.4 nM) were associated with increase in turbidity demonstrating the DFe inputs associated with re-suspended sediments and/or pore waters. In the eastern part of the transect, water of the Loire river has been identified has a source of iron. Close to the shelf break the two dimensional iron distribution became more complex. A tidal front, internal waves and slope currents created a patchy distribution of DFe. Evertheless the input from below was always observable at depth between 500 and 1200 m. Finally, in the western part of the transect, off the plateau, the concentration of DFe was strongly correlated with the occurrence of different water masses (see abstract by A. Laës).

Line Transect Surveys Underdetect Terrestrial Mammals: Implications for the Sustainability of Subsistence Hunting

PubMed Central

Levi, Taal; Oliveira, Luiz F. B.; Luzar, Jeffrey B.; Overman, Han; Read, Jane M.

2016-01-01

Conservation of Neotropical game species must take into account the livelihood and food security needs of local human populations. Hunting management decisions should therefore rely on abundance and distribution data that are as representative as possible of true population sizes and dynamics. We simultaneously applied a commonly used encounter-based method and an infrequently used sign-based method to estimate hunted vertebrate abundance in a 48,000-km2 indigenous landscape in southern Guyana. Diurnal direct encounter data collected during three years along 216, four-kilometer -long transects consistently under-detected many diurnal and nocturnal mammal species readily detected through sign. Of 32 species analyzed, 31 were detected by both methods; however, encounters did not detect one and under-detected another 12 of the most heavily hunted species relative to sign, while sign under-detected 12 never or rarely collected species relative to encounters. The six most important game animals in the region, all ungulates, were not encountered at 11–40% of village and control sites or on 29–72% of transects where they were detected by sign. Using the sign methodology, we find that tapirs, one of the terrestrial vertebrates considered most sensitive to overexploitation, are present at many sites where they were never visually detected during distance sampling. We find that this is true for many other species as well. These high rates of under-detection suggest that behavioral changes in hunted populations may affect apparent occurrence and abundance of these populations. Accumulation curves (detection of species on transects) were much steeper for sign for 12 of 16 hunted species than for encounters, but that pattern was reversed for 12 of 16 species unhunted in our area. We conclude that collection of sign data is an efficient and effective method of monitoring hunted vertebrate populations that complements encounter and camera-trapping methods in areas impacted by hunting. Sign surveys may be the most viable method for large-scale, management-oriented studies in remote areas, particularly those focused on community-based wildlife management. PMID:27074025

From SYNOP to AMOC: Stirring by deep cyclones and the evolution of Denmark Strait Overflow Water observed at Line W

NASA Astrophysics Data System (ADS)

Andres, M.; Toole, J. M.; Torres, D. J.; Smethie, W. M., Jr.; Joyce, T. M.; Curry, R. G.

2016-02-01

Shipboard velocity and property data from 18 transects across the North Atlantic Deep Western Boundary Current (DWBC) near 40˚N are analyzed to study the evolution of the Denmark Strait Overflow Water (DSOW) component of the DWBC and its mixing with the interior. The transects were made between 1994 and 2014 and lie along Line W, which reaches from the continental shelf south of New England to Bermuda. Measurements comprise velocity from lowered acoustic Doppler current profilers (LADCPs), CTD profiles, and trace gas chlorofluorocarbon (CFC) concentrations from bottle samples at discrete depths at 26 regular stations or a subset of these stations. In each transect, DSOW exhibits a distinct CFC concentration maximum in the abyssal ocean (> 3000 m depth) along the sloped western boundary. Sea surface height (SSH) maps from satellite altimetry indicate that quasi-stationary meander troughs of the Gulf Stream path in the upper ocean were present at Line W during 5 of the 18 sections. For these 5 sections, the LADCP velocity sections suggest the upper ocean trough is accompanied by a large cyclone in the deep ocean in the DSOW density layer. The occurrence of deep cyclones in conjunction with Gulf Stream troughs as inferred from the LADCP sections along Line W is consistent with previous observations (from 1988 to 1990) in the region from a moored array in the Synoptic Ocean Prediction (SYNOP) experiment. The SYNOP array suggested deep cyclones are present here about 35% of the time. The composite velocity section produced from the 5 Line W transects sampling through a Gulf Stream trough suggests that a typical cyclone reaches swirl speeds of greater than 30 cm/s at 3400 m depth and has a radius (distance between the center and the maximum velocity) of 75 km. The tracer data suggest that these cyclones affect not only the deep velocity structure along Line W, but also provide a mechanism for water exchange between the DWBC and the interior.

Back-Island and Open-Ocean Shorelines, and Sand Areas of the Undeveloped Areas of New Jersey Barrier Islands, March 9, 1991, to July 30, 2013

USGS Publications Warehouse

Guy, Kristy K.

2015-11-09

This Data Series Report includes open-ocean shorelines, back-island shorelines, back-island shoreline points, sand polygons, and sand lines for the undeveloped areas of New Jersey barrier islands. These data were extracted from orthoimagery (aerial photography) taken between March 9, 1991, and July 30, 2013. The images used were 0.3–1-meter (m)-resolution U.S. Geological Survey Digital Orthophoto Quarter Quads (DOQQ), U.S. Department of Agriculture National Agriculture Imagery Program (NAIP) images, National Oceanic and Atmospheric Administration images, and New Jersey Geographic Information Network images. The back-island shorelines were hand-digitized at the intersects of the apparent back-island shoreline and transects spaced at 20-m intervals. The open-ocean shorelines were hand-digitized at the approximate still-water level, such as tide level, which was fit through the average position of waves and swash apparent on the beach. Hand-digitizing was done at a scale of approximately 1:2,000. The sand polygons were derived by an image-processing unsupervised classification technique that separates images into classes. The classes were then visually categorized as either sand or not sand. Sand lines were taken from the sand polygons. Also included in this report are 20-m-spaced transect lines and the transect base lines.

Correction of bias in belt transect studies of immotile objects

USGS Publications Warehouse

Anderson, D.R.; Pospahala, R.S.

1970-01-01

Unless a correction is made, population estimates derived from a sample of belt transects will be biased if a fraction of, the individuals on the sample transects are not counted. An approach, useful for correcting this bias when sampling immotile populations using transects of a fixed width, is presented. The method assumes that a searcher's ability to find objects near the center of the transect is nearly perfect. The method utilizes a mathematical equation, estimated from the data, to represent the searcher's inability to find all objects at increasing distances from the center of the transect. An example of the analysis of data, formation of the equation, and application is presented using waterfowl nesting data collected in Colorado.

Back-island and open-ocean shorelines, and sand areas of Assateague Island, Maryland and Virginia, April 12, 1989, to September 5, 2013

USGS Publications Warehouse

Guy, Kristy K.

2015-01-01

This Data Series Report includes several open-ocean shorelines, back-island shorelines, back-island shoreline points, sand area polygons, and sand lines for Assateague Island that were extracted from natural-color orthoimagery (aerial photography) dated from April 12, 1989, to September 5, 2013. The images used were 0.3–2-meter (m)-resolution U.S. Geological Survey Digital Orthophoto Quarter Quads (DOQQ), U.S. Department of Agriculture National Agriculture Imagery Program (NAIP) images, and Virginia Geographic Information Network Virginia Base Map Program (VBMP) images courtesy of the Commonwealth of Virginia. The back-island shorelines were hand-digitized at the intersect of the apparent back-island shoreline and transects spaced at 20-m intervals. The open-ocean shorelines were hand-digitized at the approximate still water level, such as tide level, which was fit through the average position of waves and swash apparent on the beach. Hand-digitizing was done at a scale of approximately 1:2,000. The sand polygons were derived by using an image-processing unsupervised classification technique that separates images into classes. The classes were then visually categorized as either sand or not sand. Also included in this report are 20-m-spaced transect lines and the transect base lines.

IN VIVO MEASUREMENT OF PHENYLGLUCUCURONIDE IN RAINBOW TROUT BY ON-LINE INJECTION MICRODIALYSIS

EPA Science Inventory

Phenylglucuronide (PG) was measured in vivo in arterial blood of rainbow trout using on-line injection microdialysis. A microdialysis probe was surgically implanted in the dorsal aorta of spinally-transected trout. The trout were dosed continuously with PG for 24 h using a ventra...

Measuring Historical Coastal Change using GIS and the Change Polygon Approach

USGS Publications Warehouse

Smith, M.J.; Cromley, R.G.

2012-01-01

This study compares two automated approaches, the transect-from-baseline technique and a new change polygon method, for quantifying historical coastal change over time. The study shows that the transect-from-baseline technique is complicated by choice of a proper baseline as well as generating transects that intersect with each other rather than with the nearest shoreline. The change polygon method captures the full spatial difference between the positions of the two shorelines and average coastal change is the defined as the ratio of the net area divided by the shoreline length. Although then change polygon method is sensitive to the definition and measurement of shoreline length, the results are more invariant to parameter changes than the transect-from-baseline method, suggesting that the change polygon technique may be a more robust coastal change method. ?? 2012 Blackwell Publishing Ltd.

The percentage of coral reef cover in Saonek Kecil Island, Raja Ampat, West Papua

NASA Astrophysics Data System (ADS)

Wiguna, D. A.; Masithah, E. D.; Manan, A.

2018-04-01

Raja Ampat archipelago is located in the heart of the world’s coral triangle which is the center of the richest tropical marine biodiversity in the world. The Saonek Kecil Island has a location close to the Waisai Harbour (±2 km of sea routes). The Island that has no inhabitants and has a location close to harbour activities potentially damage coral reefs. This research was conducted by Line Intercept Transect (LIT) method that calculate the length of each colony form of growth (life form) of coral reefs on the line transect which stretched along the 50 metres parallel to the coastline at each station to obtain the percentage cover data, diversity index, uniformity index, and dominance index. The results of research precentage cover of coral reeef in the waters of Small Saonek Island reach 68.80% – 79.30% by category according to the decision of the Minister of State for the Environment number 4 of 2001 about the damage the reefs criteria included in the category of good – very good. As for the value of diversity index (H’) of 0.487 – 0.675 (medium-high), uniformity index (J) 0.437 – 0.606 (medium-high), and dominance index (C) 0.338 – 0.502 (medium-high).

Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats.

PubMed

Braun de Torrez, Elizabeth C; Wallrichs, Megan A; Ober, Holly K; McCleery, Robert A

2017-01-01

Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys ('mobile transects') have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park): (1) mobile transects, (2) stationary surveys that were strategically located by sources of open water and (3) stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm). Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season.

Evaluation of radio-tracking and strip transect methods for determining foraging ranges of Black-Legged Kittiwakes

USGS Publications Warehouse

Ostrand, William D.; Drew, G.S.; Suryan, R.M.; McDonald, L.L.

1998-01-01

We compared strip transect and radio-tracking methods of determining foraging range of Black-legged Kittiwakes (Rissa tridactyla). The mean distance birds were observed from their colony determined by radio-tracking was significantly greater than the mean value calculated from strip transects. We determined that this difference was due to two sources of bias: (1) as distance from the colony increased, the area of available habitat also increased resulting in decreasing bird densities (bird spreading). Consequently, the probability of detecting birds during transect surveys also would decrease as distance from the colony increased, and (2) the maximum distance birds were observed from the colony during radio-tracking exceeded the extent of the strip transect survey. We compared the observed number of birds seen on the strip transect survey to the predictions of a model of the decreasing probability of detection due to bird spreading. Strip transect data were significantly different from modeled data; however, the field data were consistently equal to or below the model predictions, indicating a general conformity to the concept of declining detection at increasing distance. We conclude that radio-tracking data gave a more representative indication of foraging distances than did strip transect sampling. Previous studies of seabirds that have used strip transect sampling without accounting for bird spreading or the effects of study-area limitations probably underestimated foraging range.

Electrical Resistivity and Seismic Surveys at the Nevada Test Site, Nevada, April 2007

USGS Publications Warehouse

Haines, Seth S.; Burton, Bethany L.; Sweetkind, Donald S.; Asch, Theodore H.

2008-01-01

In April 2007, the USGS collected direct-current (DC) electrical resistivity data and shear- (S) and compressional- (P) wave seismic data to provide new detail of previously mapped, overlapping fault splays at two administrative areas in the Nevada Test Site (NTS). In NTS Area 7, we collected two-dimensional DC resistivity data along a transect crossing the Yucca Fault parallel to, and between, two transects along which resistivity data were collected in a previous study in 2006. In addition, we collected three-dimensional DC resistivity data in a grid that overlies part of the 2007 transect. The DC resistivity data show that the fault has a footwall that is more conductive than the hanging wall and an along-strike progression of the fault in a location where overlapping splays are present. Co-located with the northernmost of the two 2006 DC resistivity transects, we acquired S- and P-wave seismic data for both reflection and refraction processing. The S-wave data are corrupted by large amounts of converted (P-wave) energy likely due to the abundance of fractured caliche in the shallow subsurface. The P-wave data show minimal reflected energy, but they show clear refracted first arrivals. We have inverted these first arrival times to determine P-wave seismic velocity models. The seismic model for the transect in Area 7 shows low velocities extending to the base of the model at the location of the Yucca Fault, as well as low velocities at the eastern end of the transect, in the vicinity of the adjacent crater. These new surveys provide further detail about the geometry of the Yucca Fault in this location where it shows two overlapping splays. We collected P- and S-wave seismic data along a transect in the southern part of NTS Area 2, corresponding with the location of a 2006 DC resistivity transect that targeted a set of small faults identified with field mapping. Again, the S-wave data are difficult to interpret. The P-wave data show clear first arrivals that we inverted, yielding a velocity model that shows lateral heterogeneity similar to the 2006 DC resistivity models. Finally, we collected P-wave data along a second transect in Area 2, located north of the first line and in an area of a very minor fault that was targeted by another 2006 DC resistivity survey. The P-wave refraction velocity model shows generally high velocities, with a zone of somewhat lower velocities in the central part of the transect. The position of the low velocity zone corresponds with the location of a minor fault, though it is unclear whether the two are related. Together, these results demonstrate the value of geophysical data for mapping the subsurface extent of faults. The 2007 DC resistivity data complement the 2006 data and provide important new detail of the overlapping fault splays. The seismic data demonstrate the ability of P-wave refraction methods to identify the damage zones at faults, and they show the difficulties associated with S-wave methods in areas with caliche. Combining all of the geophysical data from the Area 7 studies, we are able to develop a coherent interpretation of the relation between the site geology, the fault, and the observations.

Measure of pancreas transection and postoperative pancreatic fistula.

PubMed

Takahashi, Shinichiro; Gotohda, Naoto; Kato, Yuichiro; Konishi, Masaru

2016-05-15

In pancreaticoduodenectomy (PD), a standard protocol for pancreas transection has not been established although the method of pancreas transection might be involved in the occurrence of postoperative pancreatic fistula (POPF). This study aimed to compare whether pancreas transection by ultrasonically activated shears (UAS) or that by scalpel contributed more to POPF development. A prospective database of 171 patients who underwent PD for periampullary tumor at National Cancer Center Hospital East between January 2010 and June 2013 was reviewed. Among the 171 patients, 93 patients with soft pancreas were specifically included in this study. Surgical results and background were compared between patients with pancreas transection by UAS and scalpel to evaluate the effectiveness of UAS on reducing POPF. Body mass index, main pancreatic duct diameter, or other clinicopathologic factors that have been reported as predictive factors for POPF were not significantly different between the two groups. The incidence of all grades of POPF and that of grade B were significantly lower in the scalpel group (52%, 4%) than in the UAS group (74%, 42%). Postoperative complications ≥ grade III were also significantly fewer in the scalpel group. Scalpel transection was less associated with POPF than UAS transection in patients who underwent PD for soft pancreas. The method of pancreas transection plays an important role in the prevention of clinical POPF. Copyright © 2016 Elsevier Inc. All rights reserved.

Comparison of rangeland vegetation sampling techniques in the Central Grasslands

USGS Publications Warehouse

Stohlgren, T.J.; Bull, K.A.; Otsuki, Yuka

1998-01-01

Maintaining native plant diversity, detecting exotic species, and monitoring rare species are becoming important objectives in rangeland conservation. Four rangeland vegetation sampling techniques were compared to see how well they captured local pant diversity. The methods tested included the commonly used Parker transects, Daubenmire transects as modified by the USDA Forest Service, a new transect and 'large quadrat' design proposed by the USDA Agricultural Research Service, and the Modified-Whittaker multi-scale vegetation plot. The 4 methods were superimposed in shortgrass steppe, mixed grass prairie, northern mixed prairie, and tallgrass prairie in the Central Grasslands of the United States with 4 replicates in each prairie type. Analysis of variance tests showed significant method effects and prairie type effects, but no significant method X type interactions for total species richness, the number of native species, the number of species with less than 1 % cover, and the time required for sampling. The methods behaved similarly in each prairie type under a wide variety of grazing regimens. The Parker, large quadrat, and Daubenmire transects significantly underestimated the total species richness and the number of native species in each prairie type, and the number of species with less than 1 % cover in all but the tallgrass prairie type. The transect techniques also consistently missed half the exotic species, including noxious weeds, in each prairie type. The Modified-Whittaker method, which included an exhaustive search for plant species in a 20 x 50 m plot, served as the baseline for species richeness comparisons. For all prairie types, the Modified-Whittaker plot captured an average of 42. (?? 2.4; 1 S.E.) plant species per site compared to 15.9 (?? 1.3), 18.9 (?? 1.2), and 22.8 (?? 1.6) plant species per site using the Parker, large quadrat, and Daubenmire transect methods, respectively. The 4 methods captured most of the dominant species at each site and thus produced similar results for total foliar cover and soil cover. The detection and measurement of exotic plant species were greatly enhanced by using ten 1 m2 subplots in a multi-scale sampling design and searching a larger area (1,000 m2) at each site. Even with 4 replicate sites, the transect methods usually captured, and thus would monitor, 36 to 66 % of the plant species at each site. To evaluate the status and trends of common, rare, and exotic plant species at local, regional, and national scales, innovative, multi-scale methods must replace the commonly used transect methods to the past.

Estimating the encounter rate variance in distance sampling

USGS Publications Warehouse

Fewster, R.M.; Buckland, S.T.; Burnham, K.P.; Borchers, D.L.; Jupp, P.E.; Laake, J.L.; Thomas, L.

2009-01-01

The dominant source of variance in line transect sampling is usually the encounter rate variance. Systematic survey designs are often used to reduce the true variability among different realizations of the design, but estimating the variance is difficult and estimators typically approximate the variance by treating the design as a simple random sample of lines. We explore the properties of different encounter rate variance estimators under random and systematic designs. We show that a design-based variance estimator improves upon the model-based estimator of Buckland et al. (2001, Introduction to Distance Sampling. Oxford: Oxford University Press, p. 79) when transects are positioned at random. However, if populations exhibit strong spatial trends, both estimators can have substantial positive bias under systematic designs. We show that poststratification is effective in reducing this bias. ?? 2008, The International Biometric Society.

A comparison of techniques for assessing farmland bumblebee populations.

PubMed

Wood, T J; Holland, J M; Goulson, D

2015-04-01

Agri-environment schemes have been implemented across the European Union in order to reverse declines in farmland biodiversity. To assess the impact of these schemes for bumblebees, accurate measures of their populations are required. Here, we compared bumblebee population estimates on 16 farms using three commonly used techniques: standardised line transects, coloured pan traps and molecular estimates of nest abundance. There was no significant correlation between the estimates obtained by the three techniques, suggesting that each technique captured a different aspect of local bumblebee population size and distribution in the landscape. Bumblebee abundance as observed on the transects was positively influenced by the number of flowers present on the transect. The number of bumblebees caught in pan traps was positively influenced by the density of flowers surrounding the trapping location and negatively influenced by wider landscape heterogeneity. Molecular estimates of the number of nests of Bombus terrestris and B. hortorum were positively associated with the proportion of the landscape covered in oilseed rape and field beans. Both direct survey techniques are strongly affected by floral abundance immediately around the survey site, potentially leading to misleading results if attempting to infer overall abundance in an area or on a farm. In contrast, whilst the molecular method suffers from an inability to detect sister pairs at low sample sizes, it appears to be unaffected by the abundance of forage and thus is the preferred survey technique.

Hydrodynamic assessment data associated with the July 2010 line 6B spill into the Kalamazoo River, Michigan, 2012–14

USGS Publications Warehouse

Reneau, Paul C.; Soong, David T.; Hoard, Christopher J.; Fitzpatrick, Faith A.

2015-12-07

Hydrodynamic-assessment data for the Kalamazoo River were collected by the U.S. Geological Survey (USGS) during 2012–14 to augment other hydrodynamic data-collection efforts by Enbridge Energy L.P. and the U.S. Environmental Protection Agency associated with the 2010 Enbridge Line 6B oil spill. Specifically, the USGS data-collection efforts were focused on additional background data needed for 2013–14 updates to Enbridge’s 2012 hydrodynamic and sediment-transport models for simulating resuspension and deposition of submerged oil. The main data-collection activities consisted of the following along the Kalamazoo River: (1) a survey done by use of a Real-Time Network Global Navigation Satellite System, (2) water-level measurements in impounded sections, (3) velocity, discharge, and bathymetry measurements at transects and stationary points along the oil-affected reach of the river and in Morrow Delta and Lake, (4) estimates of tributary inflows, and (5) suspended-sediment concentrations and particle-size data at USGS streamgages along the Kalamazoo River. The method used to estimate bed shear stress from stationary velocity data is described. Averaged transect-based velocity data that were processed to match model grids also are included. In addition to model inputs and checks, these hydrodynamic-related data were used in submerged oil containment and recovery operations focused in impoundments and designated sediment traps. This report contains a description of the scope and methods associated with the hydrodynamic data collection and supplementary files of the USGS data that were used in modeling activities.

Evidence for a systemic regulation of neurotrophin synthesis in response to peripheral nerve injury.

PubMed

Shakhbazau, Antos; Martinez, Jose A; Xu, Qing-Gui; Kawasoe, Jean; van Minnen, Jan; Midha, Rajiv

2012-08-01

Up-regulation of neurotrophin synthesis is an important mechanism of peripheral nerve regeneration after injury. Neurotrophin expression is regulated by a complex series of events including cell interactions and multiple molecular stimuli. We have studied neurotrophin synthesis at 2 weeks time-point in a transvertebral model of unilateral or bilateral transection of sciatic nerve in rats. We have found that unilateral sciatic nerve transection results in the elevation of nerve growth factor (NGF) and NT-3, but not glial cell-line derived neurotrophic factor or brain-derived neural factor, in the uninjured nerve on the contralateral side, commonly considered as a control. Bilateral transection further increased NGF but not other neurotrophins in the nerve segment distal to the transection site, as compared to the unilateral injury. To further investigate the distinct role of NGF in regeneration and its potential for peripheral nerve repair, we transduced isogeneic Schwann cells with NGF-encoding lentivirus and transplanted the over-expressing cells into the distal segment of a transected nerve. Axonal regeneration was studied at 2 weeks time-point using pan-neuronal marker NF-200 and found to directly correlate with NGF levels in the regenerating nerve. © 2012 The Authors. Journal of Neurochemistry © 2012 International Society for Neurochemistry.

Comparing census methods for the endangered Kirtland's Warbler

Treesearch

John R. Probst; Deahn M. Donner; Mike Worland; Jerry Weinrich; Phillip Huber; Kenneth R. Ennis

2005-01-01

We compared transect counts used for the annual official count of male Kirtland`s Warblers (Dendroica kirtlandii) to an observation-based mapping method of individually sighted males in 155 stands over 10 yrs. The annual census count almost tripled from 1990 to 1999. The transect and observation-based mapping method showed the same increasing trend...

Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats

PubMed Central

Wallrichs, Megan A.; Ober, Holly K.; McCleery, Robert A.

2017-01-01

Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys (‘mobile transects’) have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park): (1) mobile transects, (2) stationary surveys that were strategically located by sources of open water and (3) stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm). Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season. PMID:29134138

78 FR 35851 - Takes of Marine Mammals Incidental to Specified Activities; Taking Marine Mammals Incidental to...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-14

... other than the one provided here. Comments sent via email, including all attachments, must not exceed a... source (shot) transect lines will run perpendicular to the receiver nodal lines, each spaced 300 to 335 m... kilometers of the survey box will have been shot, with the remaining area to be surveyed found 5 to 8...

Trail Transect: A Method for Documenting Trail Changes

Treesearch

R.E. Leonard; A.M. Whitney

1977-01-01

A trail transect that documents trail conditions and changes in trails has been used successfully over the past 3 years to measure soil loss, and changes in trail width and vegetation. The system also can be used to study the relationship between trail degradation and the physical characteristics of the site. Data from trail transects can be useful in determining the...

Estimating nest detection probabilities for white-winged dove nest transects in Tamaulipas, Mexico

USGS Publications Warehouse

Nichols, J.D.; Tomlinson, R.E.; Waggerman, G.

1986-01-01

Nest transects in nesting colonies provide one source of information on White-winged Dove (Zenaida asiatica asiatica) population status and reproduction. Nests are counted along transects using standardized field methods each year in Texas and northeastern Mexico by personnel associated with Mexico's Office of Flora and Fauna, the Texas Parks and Wildlife Department, and the U.S. Fish and Wildlife Service. Nest counts on transects are combined with information on the size of nesting colonies to estimate total numbers of nests in sampled colonies. Historically, these estimates have been based on the actual nest counts on transects and thus have required the assumption that all nests lying within transect boundaries are detected (seen) with a probability of one. Our objectives were to test the hypothesis that nest detection probability is one and, if rejected, to estimate this probability.

Use of the transect method in satellite survey missions with application to the infrared astronomical satellite /IRAS/

NASA Technical Reports Server (NTRS)

Mclaughlin, W. I.; Lundy, S. A.; Ling, H. Y.; Stroberg, M. W.

1980-01-01

The coverage of the celestial sphere or the surface of the earth with a narrow-field instrument onboard a satellite can be described by a set of swaths on the sphere. A transect is a curve on this sphere constructed to sample the coverage. At each point on the transect the number of times that the field-of-view of the instrument has passed over the point is recorded. This information is conveniently displayed as an integer-valued histogram over the length of the transect. The effectiveness of the transect method for a particular observing plan and the best placement of the transects depends upon the structure of the set of observations. Survey missions are usually characterized by a somewhat parallel alignment of the instrument swaths. Using autocorrelation and cross-correlation functions among the histograms the structure of a survey has been analyzed into two components, and each is illustrated by a simple mathematical model. The complex, all-sky survey to be performed by the Infrared Astronomical Satellite (IRAS) is synthesized in some detail utilizing the objectives and constraints of that mission. It is seen that this survey possesses the components predicted by the simple models and this information is useful in characterizing the properties of the IRAS survey and the placement of the transects as a function of celestial latitude and certain structural properties of the coverage.

Limited depth zonation among bathyal epibenthic megafauna of the Gully submarine canyon, northwest Atlantic

NASA Astrophysics Data System (ADS)

Kenchington, E. L.; Cogswell, A. T.; MacIsaac, K. G.; Beazley, L.; Law, B. A.; Kenchington, T. J.

2014-06-01

The Gully is a large submarine canyon incised into the Scotian Shelf, in the northwest Atlantic. A submersible-mounted camera was used to collect 17 km of high resolution video imagery of the soft sediment flanks and floor of the canyon between 1000 and 2500 m depth. A depth-stratified random survey design with two transects per stratum was followed. Depth strata were drawn at 1000-1500 m, 1500-2000 m and 2000-2500 m reflecting global and regional faunal boundaries. The 47,614 individuals or colonies observed on the transects were identified into 49 unique taxa drawn from 7 phyla, while 21 additional taxa were observed between the transect lines. Cnidaria was the most diverse phylum (22 taxa) on the transects, followed by the Echinodermata (15 taxa). Most fauna were sessile or sedentary suspension feeders. A species of Xenophyophorida, likely Syringammina sp., was the most abundant taxon. Cluster analysis of transects based on a Bray-Curtis (BC) matrix of species abundance identified one cluster of five transects and one independent transect - the deepest transect (2406 m average depth). A similarity profile test indicated that this structure is not random. There was a significant change in the megafaunal assemblage with depth over scales of 10s of kilometers, accounting for 65% of the variation in the BC matrix. Both total organic carbon and labile carbon were higher in cores from the 1000-1500 m stratum than at greater depth, consistent with transport of food and sediments into the canyon from shallower waters. The first principal component calculated from species abundances separated the two transects from the 1000-1500 m depth stratum from the others indicating that sediment food supply influences community structure and composition. Over small spatial scales (≤10 m), eight groups of species associations were identified. However, the associations between the species within each group were not strong with the highest correlation between the Xenophyophorida and the Pennatulacea (ρ=0.66). At this spatial scale substrate type was an important factor, with hard and soft bottom species associations being identified.

Density (DE)

Treesearch

John F. Caratti

2006-01-01

The FIREMON Density (DE) method is used to assess changes in plant species density and height for a macroplot. This method uses multiple quadrats and belt transects (transects having a width) to sample within plot variation and quantify statistically valid changes in plant species density and height over time. Herbaceous plant species are sampled with quadrats while...

Evaluation of a Powered Stapler System with Gripping Surface Technology on Surgical Interventions Required During Laparoscopic Sleeve Gastrectomy.

PubMed

Fegelman, Elliott; Knippenberg, Susan; Schwiers, Michael; Stefanidis, Dimitrios; Gersin, Keith S; Scott, John D; Fernandez, Adolfo Z

2017-05-01

Transection of gastric tissue during laparoscopic sleeve gastrectomy (LSG) can be challenging. Reinforcing the staple line may decrease the incidence of issues requiring intervention. The objective of this study was to compare the number of intraoperative surgical interventions for a surgical stapler and reload system with Gripping Surface Technology (GST) to standard reloads in patients who underwent LSG. Patients who underwent elective LSG were enrolled. The study was conducted in two stages. For Stage 1, procedures were performed using a powered stapler and standard reloads. For Stage 2, a reload system with GST was used. The primary endpoint was surgical interventions for bleeding and/or staple line issues during transection of the greater curvature of the stomach. Propensity score matching was applied to create two groups similar in baseline characteristics and risk factors. A total of 111 subjects were enrolled across four centers. Propensity-matched procedures were completed with the standard (n = 38) or GST reloads (n = 38). The mean number of interventions in the standard group was 1.9 (1.29) versus 1.1 (1.45) in the GST group. Nonparametric comparisons were statistically significant, indicating a reduction in the distribution of interventions for GST subjects (P = .0036 for matched pair data). Tissue slippage during transection was low for both groups. Intraoperative leak testing was negative in all procedures, and no procedures were converted to open. Use of the GST stapling system reduces the need for staple line interventions in LSG. Both stapling systems had an acceptable safety profile.

Problems with sampling desert tortoises: A simulation analysis based on field data

USGS Publications Warehouse

Freilich, J.E.; Camp, R.J.; Duda, J.J.; Karl, A.E.

2005-01-01

The desert tortoise (Gopherus agassizii) was listed as a U.S. threatened species in 1990 based largely on population declines inferred from mark-recapture surveys of 2.59-km2 (1-mi2) plots. Since then, several census methods have been proposed and tested, but all methods still pose logistical or statistical difficulties. We conducted computer simulations using actual tortoise location data from 2 1-mi2 plot surveys in southern California, USA, to identify strengths and weaknesses of current sampling strategies. We considered tortoise population estimates based on these plots as "truth" and then tested various sampling methods based on sampling smaller plots or transect lines passing through the mile squares. Data were analyzed using Schnabel's mark-recapture estimate and program CAPTURE. Experimental subsampling with replacement of the 1-mi2 data using 1-km2 and 0.25-km2 plot boundaries produced data sets of smaller plot sizes, which we compared to estimates from the 1-mi 2 plots. We also tested distance sampling by saturating a 1-mi 2 site with computer simulated transect lines, once again evaluating bias in density estimates. Subsampling estimates from 1-km2 plots did not differ significantly from the estimates derived at 1-mi2. The 0.25-km2 subsamples significantly overestimated population sizes, chiefly because too few recaptures were made. Distance sampling simulations were biased 80% of the time and had high coefficient of variation to density ratios. Furthermore, a prospective power analysis suggested limited ability to detect population declines as high as 50%. We concluded that poor performance and bias of both sampling procedures was driven by insufficient sample size, suggesting that all efforts must be directed to increasing numbers found in order to produce reliable results. Our results suggest that present methods may not be capable of accurately estimating desert tortoise populations.

The effect of changes to the method of estimating the pollen count from aerobiological samples.

PubMed

Sikoparija, Branko; Pejak-Šikoparija, Tatjana; Radišić, Predrag; Smith, Matt; Soldevilla, Carmen Galán

2011-02-01

Pollen data have been recorded at Novi Sad in Serbia since 2000. The adopted method of producing pollen counts has been the use of five longitudinal transects that examine 19.64% of total sample surface. However, counting five transects is time consuming and so the main objective of this study is to investigate whether reducing the number to three or even two transects would have a significant effect on daily average and bi-hourly pollen concentrations, as well as the main characteristics of the pollen season and long-term trends. This study has shown that there is a loss of accuracy in daily average and bi-hourly pollen concentrations (an increase in % ERROR) as the sub-sampling area is reduced from five to three or two longitudinal transects. However, this loss of accuracy does not impact on the main characteristics of the season or long-term trends. As a result, this study can be used to justify changing the sub-sampling method used at Novi Sad from five to three longitudinal transects. The use of two longitudinal transects has been ruled out because, although quicker, the counts produced: (a) had the greatest amount of % ERROR, (b) altered the amount of influence of the independent variable on the dependent variable (the slope in regression analysis) and (c) the total sampled surface (7.86%) was less than the minimum requirement recommended by the European Aerobiology Society working group on Quality Control (at least 10% of total slide area).

Extirpation of freshwater mussels (Bivalvia: Unionidae) following the invasion of dreissenid mussels in an interconnecting river of the Laurentian Great Lakes

USGS Publications Warehouse

Schloesser, Don W.; Metcalfe-Smith, Janice L.; Kovalak, William P.; Longton, Gary D.; Smithee, Rick D.

2006-01-01

Previous (1992-1994) surveys for native freshwater mussels (Unionidae) along main channels of the Detroit River showed that unionids had been extirpated from all but four sites in the upper reaches of the river due to impacts of dreissenid mussels (Dreissena polymorpha and D. bugensis). These four sites were surveyed again in 1998 using the same sampling method (timed-random searches) to determine if they may serve as ''refugia'' where unionids and dreissenids co-exist. Two additional sites were sampled using additional methods (excavated-quadrat and line-transect searches) for comparison with unpublished data collected in 1987 and 1990. A total of four individuals of four species (Actinonaias ligamentina, Cyclonaias tuberculata, Lasmigona complanata and Pleurobema sintoxia) were found by timed-random searches at four sites in 1998 compared to 720 individuals of 24 species in 1992 and 39 individuals of 13 species in 1994. Excavated-quadrat and line-transect searches at the two additional sites yielded only one live specimen of Ptychobranchus fasciolaris compared to 288 individuals of 18 species in 1987 and 1990. Results of this study suggest that remaining densities of unionids in channels of the Detroit River are too low to support viable reproducing populations of any species. Therefore, we conclude that unionids have been extirpated from main channels of the Detroit River due to dreissenid infestation. As the Detroit River was one of the first water bodies in North America to be invaded by dreissenids, it is likely that unionids will also be extirpated from many other rivers and lakes across eastern North America over the next few decades. Resource agencies should be encouraged to implement active management programs to protect remaining unionid populations from zebra mussels.

Lithology and chronology of ice-sheet fluctuations (magnetic susceptibility of cores from the western Ross Sea)

NASA Technical Reports Server (NTRS)

Jennings, Anne E.

1993-01-01

The goals of the marine geology part of WAIS include reconstructing the chronology and areal extent of ice-sheet fluctuations and understanding the climatic and oceanographic influences on ice-sheet history. As an initial step toward attaining these goals, down-core volume magnetic susceptibility (MS) logs of piston cores from three N-S transects in the western Ross Sea are compared. The core transects are within separate petrographic provinces based on analyses of till composition. The provinces are thought to reflect the previous locations of ice streams on the shelf during the last glaciation. Magnetic susceptibility is a function of magnetic mineral composition, sediment texture, and sediment density. It is applied in the western Ross Sea for two purposes: (1) to determine whether MS data differentiates the three transects (i.e., flow lines), and thus can be used to make paleodrainage reconstructions of the late Wisconsinan ice sheet; and (2) to determine whether the MS data can aid in distinguishing basal till diamictons from diamictons of glacial-marine origin and thus, aid paleoenvironmental interpretations. A comparison of the combined data of cores in each transect is presented.

State-space modeling of population sizes and trends in Nihoa Finch and Millerbird

USGS Publications Warehouse

Gorresen, P. Marcos; Brinck, Kevin W.; Camp, Richard J.; Farmer, Chris; Plentovich, Sheldon M.; Banko, Paul C.

2016-01-01

Both of the 2 passerines endemic to Nihoa Island, Hawai‘i, USA—the Nihoa Millerbird (Acrocephalus familiaris kingi) and Nihoa Finch (Telespiza ultima)—are listed as endangered by federal and state agencies. Their abundances have been estimated by irregularly implemented fixed-width strip-transect sampling from 1967 to 2012, from which area-based extrapolation of the raw counts produced highly variable abundance estimates for both species. To evaluate an alternative survey method and improve abundance estimates, we conducted variable-distance point-transect sampling between 2010 and 2014. We compared our results to those obtained from strip-transect samples. In addition, we applied state-space models to derive improved estimates of population size and trends from the legacy time series of strip-transect counts. Both species were fairly evenly distributed across Nihoa and occurred in all or nearly all available habitat. Population trends for Nihoa Millerbird were inconclusive because of high within-year variance. Trends for Nihoa Finch were positive, particularly since the early 1990s. Distance-based analysis of point-transect counts produced mean estimates of abundance similar to those from strip-transects but was generally more precise. However, both survey methods produced biologically unrealistic variability between years. State-space modeling of the long-term time series of abundances obtained from strip-transect counts effectively reduced uncertainty in both within- and between-year estimates of population size, and allowed short-term changes in abundance trajectories to be smoothed into a long-term trend.

Wing Infrastructure and Development Outlook (WINDO) Final Environmental Assessment

DTIC Science & Technology

2006-06-01

installation, and repair F Construct revetment , paint taxi lines, install runway shoulders, extend/repair flight line, maintain airfield pavement...RKMF990065 CONSTRUCT CHAPEL MEETING FAC C RKMF000041 CONSTRUCT REVETMENT LOLA SUPPORT FAC F RKMF010042 CONSTRUCT SHOULDERS RUNWAY 03L/21R F RKMF030054...100-foot transect intervals. Sampling utilized 100- foot intervals in blocks . Isolate artifacts were recorded on site forms until 1996. They were

Diverse Seismic Imaging Created by the Seismic Explosion Experiment of the TAIGER Project

NASA Astrophysics Data System (ADS)

Wang, C.; Okaya, D.; Wu, F.; Yen, H.; Huang, B.; Liang, W.

2008-12-01

The TAIGER (TAiwan Integrated GEodynamics Research) project which examines the Taiwan orogeny includes five experiments: natural earthquake recording, man-made explosion recording, Magnetotelluic imaging, marine MCS and sea-land shooting, and deformation evolution modeling. During Feb-Mar 2008, the explosion experiment was carried out. Ten sources with 500~3000kg dynamite were detonated along two transects across northern and southern Taiwan. Over 600 PASSCAL Texans and 40 R-130 instruments record the signals over 100~300 km range. Additional arrays with 100 seismometers were deployed to collect north-south line and fan shoot data for 3D imaging. Furthermore, there are 9 ocean bottom seismometers (OBS) in the Taiwan Strait and two lines with 20 seismometers deployed on the mainland China side. A large volume of qualified data has been created. Except explosion signals, numerous local and regional earthquakes were also recorded even by the Texan instruments. The rich earthquake-explosion dataset now exists at the Institute of Earth Sciences, Academia Sinica operated by the Taiwan Earthquake Center (TEC). Preliminary examination of the data reveal crustal Pg, PmP, Pn and intermediate crustal reflection phases within the transect profiles and in the 3D cross-arrays. These data provide direct seismic imaging of the continental Moho under Taiwan and the sharp Moho root configuration associated with mountain building. Seismic tomography and raytrace methods reveal velocity structure consistent with convergence and vertical exhumation of the Central Ranges.

Polar bear aerial survey in the eastern Chukchi Sea: A pilot study

USGS Publications Warehouse

Evans, Thomas J.; Fischbach, Anthony S.; Schliebe, Scott L.; Manly, Bryan; Kalxdorff, Susanne B.; York, Geoff S.

2003-01-01

Alaska has two polar bear populations: the Southern Beaufort Sea population, shared with Canada, and the Chukchi/Bering Seas population, shared with Russia. Currently a reliable population estimate for the Chukchi/Bering Seas population does not exist. Land-based aerial and mark-recapture population surveys may not be possible in the Chukchi Sea because variable ice conditions, the limited range of helicopters, extremely large polar bear home ranges, and severe weather conditions may limit access to remote areas. Thus line-transect aerial surveys from icebreakers may be the best available tool to monitor this polar bear stock. In August 2000, a line-transect survey was conducted in the eastern Chukchi Sea and western Beaufort Sea from helicopters based on a U.S. Coast Guard icebreaker under the "Ship of Opportunity" program. The objectives of this pilot study were to estimate polar bear density in the eastern Chukchi and western Beaufort Seas and to assess the logistical feasibility of using ship-based aerial surveys to develop polar bear population estimates. Twenty-nine polar bears in 25 groups were sighted on 94 transects (8257 km). The density of bears was estimated as 1 bear per 147 km² (CV = 38%). Additional aerial surveys in late fall, using dedicated icebreakers, would be required to achieve the number of sightings, survey effort, coverage, and precision needed for more effective monitoring of population trends in the Chukchi Sea.

The transect method: a novel approach to on-farm welfare assessment of commercial turkeys

PubMed Central

Marchewka, Joanna; Estevez, Inma; Vezzoli, Giuseppe; Ferrante, Valentina; Makagon, Maja M.

2015-01-01

Currently, no animal-based protocol for on-farm welfare assessment of commercial turkeys is available. The birds’ size and flighty nature make obtaining a representative sample using traditional methods difficult. The transect walks (TW) approach provides a potential alternative for on-farm assessments of turkey welfare. We compared the TW approach with a traditional method, and data collected as the birds were moved out of the house during the load out process (L). Ten commercial 19- to 20-week-old Hybrid turkey flocks were evaluated (1 flock/house/farm). Half of the flocks were housed on farms deemed as “faring well” by the company, the other half were on “suboptimal” farms. Each house was subdivided longitudinally into 4 transects. Two observers walked the transects in random order, recording the total number of birds per transect that were immobile; lame; aggressive towards a mate; interacting with humans; with visible head, vent, or back wounds; engaging in mounting behaviors; small; featherless; dirty; sick; terminal; or dead. Flocks were re-evaluated on the same day using the individual sampling method (S), where randomly selected birds were scored as they took 10 steps. Flocks were re-assessed within 48 h of the transect evaluation, as birds were funneled out of the house during load out. Using ANOVAs we determined the effects of observers, method, management, and their interactions on proportions of turkeys per house within each category. Outcome parameters were not affected by management (P > 0.05 for all) or observer (P > 0.05 for most), but an assessment method effect was detected (P < 0.05). S differed from the 2 other methods (P < 0.05) for most parameters except aggression towards a mate, back wounds, dirty, sick, and vent wounds. Differences were not detected between data collected using TW and during L, except for dead (P = 0.0007) and immobile (P = 0.007). Results suggest that the TW method is a promising tool for on-farm turkey welfare assessment as it produced results similar to those obtained at L when all birds could be scored individually. PMID:25577791

The transect method: a novel approach to on-farm welfare assessment of commercial turkeys.

PubMed

Marchewka, Joanna; Estevez, Inma; Vezzoli, Giuseppe; Ferrante, Valentina; Makagon, Maja M

2015-01-01

Currently, no animal-based protocol for on-farm welfare assessment of commercial turkeys is available. The birds' size and flighty nature make obtaining a representative sample using traditional methods difficult. The transect walks (TW) approach provides a potential alternative for on-farm assessments of turkey welfare. We compared the TW approach with a traditional method, and data collected as the birds were moved out of the house during the load out process (L). Ten commercial 19- to 20-week-old Hybrid turkey flocks were evaluated (1 flock/house/farm). Half of the flocks were housed on farms deemed as "faring well" by the company, the other half were on "suboptimal" farms. Each house was subdivided longitudinally into 4 transects. Two observers walked the transects in random order, recording the total number of birds per transect that were immobile; lame; aggressive towards a mate; interacting with humans; with visible head, vent, or back wounds; engaging in mounting behaviors; small; featherless; dirty; sick; terminal; or dead. Flocks were re-evaluated on the same day using the individual sampling method (S), where randomly selected birds were scored as they took 10 steps. Flocks were re-assessed within 48 h of the transect evaluation, as birds were funneled out of the house during load out. Using ANOVAs we determined the effects of observers, method, management, and their interactions on proportions of turkeys per house within each category. Outcome parameters were not affected by management (P>0.05 for all) or observer (P>0.05 for most), but an assessment method effect was detected (P<0.05). S differed from the 2 other methods (P<0.05) for most parameters except aggression towards a mate, back wounds, dirty, sick, and vent wounds. Differences were not detected between data collected using TW and during L, except for dead (P=0.0007) and immobile (P=0.007). Results suggest that the TW method is a promising tool for on-farm turkey welfare assessment as it produced results similar to those obtained at L when all birds could be scored individually. © The Author 2015. Published by Oxford University Press on behalf of Poultry Science Association.

Numerical simulations to assess the tracer dilution method for measurement of landfill methane emissions.

PubMed

Taylor, Diane M; Chow, Fotini K; Delkash, Madjid; Imhoff, Paul T

2016-10-01

Landfills are a significant contributor to anthropogenic methane emissions, but measuring these emissions can be challenging. This work uses numerical simulations to assess the accuracy of the tracer dilution method, which is used to estimate landfill emissions. Atmospheric dispersion simulations with the Weather Research and Forecast model (WRF) are run over Sandtown Landfill in Delaware, USA, using observation data to validate the meteorological model output. A steady landfill methane emissions rate is used in the model, and methane and tracer gas concentrations are collected along various transects downwind from the landfill for use in the tracer dilution method. The calculated methane emissions are compared to the methane emissions rate used in the model to find the percent error of the tracer dilution method for each simulation. The roles of different factors are examined: measurement distance from the landfill, transect angle relative to the wind direction, speed of the transect vehicle, tracer placement relative to the hot spot of methane emissions, complexity of topography, and wind direction. Results show that percent error generally decreases with distance from the landfill, where the tracer and methane plumes become well mixed. Tracer placement has the largest effect on percent error, and topography and wind direction both have significant effects, with measurement errors ranging from -12% to 42% over all simulations. Transect angle and transect speed have small to negligible effects on the accuracy of the tracer dilution method. These tracer dilution method simulations provide insight into measurement errors that might occur in the field, enhance understanding of the method's limitations, and aid interpretation of field data. Copyright © 2016 Elsevier Ltd. All rights reserved.

A novel method of intracorporeal end-to-end gastrogastrostomy in laparoscopic pylorus-preserving gastrectomy for early gastric cancer, including a unique anastomotic technique: piercing the stomach with a linear stapler.

PubMed

Ohashi, Manabu; Hiki, Naoki; Ida, Satoshi; Kumagai, Koshi; Nunobe, Souya; Sano, Takeshi

2018-05-21

Delta-shaped anastomosis is usually applied for an intracorporeal gastrogastrostomy in totally laparoscopic pylorus-preserving gastrectomy (TLPPG). However, the remnant stomach is slightly twisted around the anastomosis because it connects in side-to-side fashion. To realize an intracorporeal end-to-end gastrogastrostomy using an endoscopic linear stapler, we invented a novel method including a unique anastomotic technique. In this new approach, we first made small gastrotomies at the greater and lesser curvatures of the transected antrum and then pierced it using an endoscopic linear stapler. After the pierced antrum and the proximal remnant stomach were mechanically connected, the gastrotomies and stapling lines were transected using an endoscopic linear stapler, creating an intracorporeal end-to-end gastrogastrostomy. We have named this technique the "piercing method" because piercing the stomach is essential to its implementation. Between October 2015 and June 2017, 26 patients who had clinically early gastric cancer at the middle third of the stomach without clinical evidence of lymph node metastasis underwent TLPPG involving the novel method. The 26 patients successfully underwent an intracorporeal mechanical end-to-end gastrogastrostomy by the piercing method. The median operation time of the 26 patients was 272 min (range 209-357 min). With the exception of one gastric stasis, no problems associated with the piercing method were encountered during and after surgery. The piercing method can safely create an intracorporeal mechanical end-to-end gastrogastrostomy in TLPPG. Piercing the stomach using an endoscopic linear stapler is a new technique for gastrointestinal anastomosis. This method should be considered if the surgical aim is creation of an intracorporeal end-to-end gastrogastrostomy in TLPPG.

The influence of surgical transection and anastomosis on the rate of cell proliferation in the colonic epithelium of normal and DMH-treated rats.

PubMed

Barkla, D H; Tutton, P M

1983-10-01

Normal and DMH-treated male rats aged 18-20 weeks underwent surgical transection and anastomosis of the transverse colon. Animals were subsequently killed at intervals of 14, 30 and 72 days. Three hours prior to sacrifice animals were injected with vinblastine sulphate and mitotic indices were subsequently estimated in histological sections. Possible differences between experimental and control groups were tested using a Student's t-test. The results show that the accumulated mitotic indices in normal and DMH-treated colon are statistically similar. The results also show that transection and anastomosis stimulates cell division in both normal and DMH-treated colon and that the increase is of greater amplitude and more prolonged duration in the DMH-treated rats. Carcinomas developed close to the line of anastomosis in DMH-treated but not in control rats. The results support the hypothesis that non-specific injury to hyperplastic colonic epithelium promotes carcinogenesis.

Detecting swift fox: Smoked-plate scent stations versus spotlighting

Treesearch

Daniel W. Uresk; Kieth E. Severson; Jody Javersak

2003-01-01

We compared two methods of detecting presence of swift fox: smoked-plate scent stations and spotlight counts. Tracks were counted on ten 1-mile (1.6-km) transects with bait/tracking plate stations every 0.1 mile (0.16 km). Vehicle spotlight counts were conducted on the same transects. Methods were compared with Spearman's rank order correlation. Repeated measures...

Locating waterfowl observations on aerial surveys

USGS Publications Warehouse

Butler, W.I.; Hodges, J.I.; Stehn, R.A.

1995-01-01

We modified standard aerial survey data collection to obtain the geographic location for each waterfowl observation on surveys in Alaska during 1987-1993. Using transect navigation with CPS (global positioning system), data recording on continuously running tapes, and a computer data input program, we located observations with an average deviation along transects of 214 m. The method provided flexibility in survey design and data analysis. Although developed for geese nesting near the coast of the Yukon-Kuskokwim Delta, the methods are widely applicable and were used on other waterfowl surveys in Alaska to map distribution and relative abundance of waterfowl. Accurate location data with GIS analysis and display may improve precision and usefulness of data from any aerial transect survey.

Nearshore bathymetric mapping along a 7-mile reach of Lake Sharpe shoreline near Lower Brule, South Dakota, 2013

USGS Publications Warehouse

Thompson, Ryan F.

2014-01-01

Shoreline erosion rates along Lake Sharpe, a Missouri River reservoir, near the community of Lower Brule, South Dakota, were studied previously during 2011–12 by the U.S. Geological Survey, the Lower Brule Sioux Tribe, and Oglala Lakota College. The rapid shoreline retreat has caused many detrimental effects along the shoreline of Lake Sharpe, including losses of cultural sites, recreation access points, wildlife habitat, irrigated cropland, and landmass. The Lower Brule Sioux Tribe is considering options to reduce or stop erosion. One such option for consideration is the placement of discontinuous rock breakwater structures in shallow water to reduce wave action at shore. Information on the depth of water and stability characteristics of bottom material in nearshore areas of Lake Sharpe is needed by the Lower Brule Sioux Tribe to develop structural mitigation alternatives. To help address this need, a bathymetric survey of nearshore areas of Lake Sharpe near Lower Brule, South Dakota, was completed in 2013 by the U.S. Geological Survey in cooperation with the Lower Brule Sioux Tribe.HYPACK® hydrographic survey software was used to plan data collection transects for a 7-mile reach of Lake Sharpe shoreline near Lower Brule, South Dakota. Regular data collection transects and oblique transects were planned to allow for quality-assurance/quality-control comparisons.Two methods of data collection were used in the bathymetric survey: (1) measurement from a boat using bathymetric instrumentation where water was more than 2 feet deep, and (2) wading using Real-Time Kinematic Global Navigation Satellite System equipment on shore and where water was shallower than 2 feet deep. A dual frequency, 24- or 200-kilohertz narrow beam, depth transducer was used in conjunction with a Teledyne Odom CV100 dual frequency echosounder for boat-based data collection. In water too shallow for boat navigation, the elevation and nature of the reservoir bottom were mapped using Real-Time Kinematic Global Navigation Satellite System equipment.Once the data collection effort was completed, data editing was performed in HYPACK® to remove erroneous data points and to apply water-surface elevations. Maps were developed separately for water depth and bottom elevation for the study area. Lines of equal water depth for 2, 3, 3.5, 4, and 5 feet from the water surface to the lake bottom were mapped in nearshore areas of Lake Sharpe. Overall, water depths stay shallow for quite a distance from shore. In the 288 transects that crossed a 2 foot depth line, this depth occurred an average of 88 feet from shore. Similarly, in the 317 transects that crossed a 3 foot depth line, this did not occur until an average of 343 feet from shore. Elevation contours of the lake bottom were mapped primarily for elevations ranging from 1,419 to 1,416 feet above North American Vertical Datum of 1988.Horizontal errors of the Real-Time Kinematic Global Navigation Satellite System equipment for the study area are essentially inconsequential because water depth and bottom elevation were determined to change relatively slowly. The estimated vertical error associated with the Real-Time Kinematic Global Navigation Satellite System equipment for the study area ranges from 0.6 to 0.9 inch. This vertical error is small relative to the accuracy of the bathymetric data.Accuracy assessments of the data collected for this study were computed according to the National Standard for Spatial Data Accuracy. The maps showing the lines of equal water depth and elevation contours of the lake bottom are able to support a 1-foot contour interval at National Standards for Spatial Data Accuracy vertical accuracy standards, which require a vertical root mean squared error of 0.30 foot or better and a fundamental vertical accuracy calculated at the 95-percent confidence level of 0.60 foot or better.

Density and abundance of Wilson's snipe Gallinago delicata in winter in the Lower Mississippi Flyway, USA

USGS Publications Warehouse

Carroll, James M.; Krementz, David G.

2014-01-01

Wilson's snipe Gallinago delicata is one of the least studied North American game birds, and information on snipe populations and abundance is mostly unknown. We conducted roadside surveys stratified at the township level in the lower Mississippi Alluvial Valley (LMAV) in Arkansas, Mississippi and Louisiana, as well as the Red River Region, and the Gulf Coastal Plain of Louisiana during winters of 2009 and 2010. We identified observer, vegetation cover, and water cover as important covariates in estimating snipe densities. We detected 2915 snipe along 814 line transects (1450 km) for 2009 and 2010 combined. We estimated snipe densities of 8.05 individuals km-2 (95% CI: 4.57-14.17) in 2009, and 2.13 individuals km-2 (95% CI: 1.47-3.08) in 2010. We used the resulting snipe density estimates within the study area to calculate abundance estimates of 1 026 431 (95% CI: 582 707-1 806 774) in 2009, and 271 590 (95% CI: 187 435-392 722) in 2010 for the LMAV. Our data indicate that a road transect survey method is effective for estimating wintering snipe density and abundance in the lower Mississippi Flyway.

Applying aerial digital photography as a spectral remote sensing technique for macrophytic cover assessment in small rural streams

NASA Astrophysics Data System (ADS)

Anker, Y.; Hershkovitz, Y.; Gasith, A.; Ben-Dor, E.

2011-12-01

Although remote sensing of fluvial ecosystems is well developed, the tradeoff between spectral and spatial resolutions prevents its application in small streams (<3m width). In the current study, a remote sensing approach for monitoring and research of small ecosystem was developed. The method is based on differentiation between two indicative vegetation species out of the ecosystem flora. Since when studied, the channel was covered mostly by a filamentous green alga (Cladophora glomerata) and watercress (Nasturtium officinale), these species were chosen as indicative; nonetheless, common reed (Phragmites australis) was also classified in order to exclude it from the stream ROI. The procedure included: A. For both section and habitat scales classifications, acquisition of aerial digital RGB datasets. B. For section scale classification, hyperspectral (HSR) dataset acquisition. C. For calibration, HSR reflectance measurements of specific ground targets, in close proximity to each dataset acquisition swath. D. For habitat scale classification, manual, in-stream flora grid transects classification. The digital RGB datasets were converted to reflectance units by spectral calibration against colored reference plates. These red, green, blue, white, and black EVA foam reference plates were measured by an ASD field spectrometer and each was given a spectral value. Each spectral value was later applied to the spectral calibration and radiometric correction of spectral RGB (SRGB) cube. Spectral calibration of the HSR dataset was done using the empirical line method, based on reference values of progressive grey scale targets. Differentiation between the vegetation species was done by supervised classification both for the HSR and for the SRGB datasets. This procedure was done using the Spectral Angle Mapper function with the spectral pattern of each vegetation species as a spectral end member. Comparison between the two remote sensing techniques and between the SRGB classification and the in-situ transects indicates that: A. Stream vegetation classification resolution is about 4 cm by the SRGB method compared to about 1 m by HSR. Moreover, this resolution is also higher than of the manual grid transect classification. B. The SRGB method is by far the most cost-efficient. The combination of spectral information (rather than the cognitive color) and high spatial resolution of aerial photography provides noise filtration and better sub-water detection capabilities than the HSR technique. C. Only the SRGB method applies for habitat and section scales; hence, its application together with in-situ grid transects for validation, may be optimal for use in similar scenarios.
The HSR dataset was first degraded to 17 bands with the same spectral range as the RGB dataset and also to a dataset with 3 equivalent bands

Spontaneous regeneration of the corticospinal tract after transection in young rats: a key role of reactive astrocytes in making favorable and unfavorable conditions for regeneration.

PubMed

Iseda, T; Nishio, T; Kawaguchi, S; Yamanoto, M; Kawasaki, T; Wakisaka, S

2004-01-01

We demonstrated the occurrence of marked regeneration of the corticospinal tract (CST) after a single transection and failure of regeneration after a repeated transection in young rats. To provide convincing evidence for the complete transection and regeneration we used retrograde neuronal double labeling. Double-labeled neurons that took up the first tracer from the transection site and the second tracer from the injection site caudal to the transection site were observed in the sensorimotor cortex. The anterograde tracing method revealed various patterns of regeneration. In the most successful cases the vast majority of regenerated fibers descended in the normal tract and terminated normally whereas a trace amount of fibers coursed aberrantly. In the less successful cases fibers descended partly normally and partly aberrantly or totally aberrantly. To clarify the role of astrocytes in determining the success or failure of regeneration we compared expression of glial fibrillary acidic protein (GFAP), vimentin and neurofilament (NF) immunoreactivity (IR) in the lesion between single and repeated transections. In either transection, astrocytes disappeared from the CST near the lesion site as early as 3 h after lesioning. However, by 24 h after a single transection, immature astrocytes coexpressing GFAP- and vimentin-IR appeared in the former astrocyte-free area and NF-positive axons crossed the lesion. By contrast, after a repeated transection the astrocyte-free area spread and NF-positive axons never crossed the lesion. It appears likely that the major sign, and possibly cause of failure of regeneration is the prolonged disappearance of astrocytes in the lesioned tract area. Copyright 2004 IBRO

A primer on stand and forest inventory designs

Treesearch

H. Gyde Lund; Charles E. Thomas

1989-01-01

Covers designs for the inventory of stands and forests in detail and with worked-out examples. For stands, random sampling, line transects, ricochet plot, systematic sampling, single plot, cluster, subjective sampling and complete enumeration are discussed. For forests inventory, the main categories are subjective sampling, inventories without prior stand mapping,...

BENTHIC AMPHIPOD COMMUNITY RESPONSE TO STRESS INDUCED BY ALGAL MATS IN A PACIFIC NORTHWEST ESTUARY

EPA Science Inventory

Amphipod, algal biomass and sediment samples were taken at two- to four-week intervals from June through December, 2000 along lines perpendicular to two transects in Yaquina Bay, OR, extending from within the Zostera marina bed at the river channel edge through intertidal burrowi...

Coral bleaching, hurricane damage, and benthic cover on coral reefs in St. John, U.S. Virgin Islands: A comparison of surveys with the chain transect method and videography

USGS Publications Warehouse

Rogers, C.S.; Miller, J.

2001-01-01

The linear chain transect method and videography were used to quantify the percent cover by corals, macroalgae, gorgonians, other living organisms, and substrate along permanent transects on two fringing reefs off St. John. Both methods were used simultaneously on Lameshur reef in November 1998, and on Newfound reef in March and October 1998. Hurricane Georges passed over St. John in September 1998, and a severe coral bleaching episode began the same month. Both methods gave remarkably similar values for coral cover, while the video method gave consistently higher values for gorgonians and macroalgae. The most dramatic difference was in the quantification of bleaching. At Newfound, the chain method indicated 13.4% (SD = 14.1) of the coral tissues were bleached and the video method, 43.4% (SD = 13.0). Corresponding values at Lameshur were 18.1% (SD = 22.3) and 46.5% (SD = 13.3). Although hurricane damage was conspicuous at Newfound reef, neither method showed significant changes in coral cover or other categories as a result of the storm.

Application of the AMBUR R package for spatio-temporal analysis of shoreline change: Jekyll Island, Georgia, USA

NASA Astrophysics Data System (ADS)

Jackson, Chester W.; Alexander, Clark R.; Bush, David M.

2012-04-01

The AMBUR (Analyzing Moving Boundaries Using R) package for the R software environment provides a collection of functions for assisting with analyzing and visualizing historical shoreline change. The package allows import and export of geospatial data in ESRI shapefile format, which is compatible with most commercial and open-source GIS software. The "baseline and transect" method is the primary technique used to quantify distances and rates of shoreline movement, and to detect classification changes across time. Along with the traditional "perpendicular" transect method, two new transect methods, "near" and "filtered," assist with quantifying changes along curved shorelines that are problematic for perpendicular transect methods. Output from the analyses includes data tables, graphics, and geospatial data, which are useful in rapidly assessing trends and potential errors in the dataset. A forecasting function also allows the user to estimate the future location of the shoreline and store the results in a shapefile. Other utilities and tools provided in the package assist with preparing and manipulating geospatial data, error checking, and generating supporting graphics and shapefiles. The package can be customized to perform additional statistical, graphical, and geospatial functions, and, it is capable of analyzing the movement of any boundary (e.g., shorelines, glacier terminus, fire edge, and marine and terrestrial ecozones).

First high-resolution near-seafloor survey of magnetic anomalies of the South China Sea

NASA Astrophysics Data System (ADS)

Lin, J.; Xu, X.; Li, C.; Sun, Z.; Zhu, J.; Zhou, Z.; Qiu, N.

2013-12-01

We successfully conducted the first high-resolution near-seafloor magnetic survey of the Central, Southwest, and Northern Central Basins of the South China Sea (SCS) during two cruises on board Chinese R/V HaiYangLiuHao in October-November 2012 and March-April 2013, respectively. Measurements of magnetic field were made along four long survey lines, including (1) a NW-SE across-isochron profile transecting the Southwest Basin and covering all ages of the oceanic crust (Line CD); (2) a N-S across-isochron profile transecting the Central Basin (Line AB); and (3) two sub-parallel NE-SW across-isochron profiles transecting the Northern Central Basin of the SCS (Lines D and E). A three-axis magnetometer was mounted on a deep-tow vehicle, flying within 0.6 km above the seafloor. The position of the tow vehicle was provided by an ultra-short baseline navigation system along Lines D and E, while was estimated using shipboard GPS along Lines AB and CD. To investigate crustal magnetization, we first removed the International Geomagnetic Reference Field (IGRF) of 2010 from the measured magnetic data, and then downward continued the resultant magnetic field data to a horizontal plane at a water depth of 4.5 km to correct for variation due to the fishing depth of the deep-tow vehicle. Finally, we calculated magnetic anomalies at various water depths after reduction-to-the-pole corrections. We also constructed polarity reversal block (PRB) models of crustal magnetization by matching peaks and troughs of the observed magnetic field anomaly. Our analysis yielded the following results: (1) The near-bottom magnetic anomaly showed peak-to-trough amplitudes of more than 2,500 nT, which are several times of the anomaly amplitudes at the sea surface, illustrating that deep-tow measurements acquired much higher spatial resolutions. (2) The deep-tow data revealed several distinctive magnetic anomalies with wavelengths of 5-15 km and amplitudes of several hundred nT. These short-wavelength anomalies were unrecognized in sea surface measurements. (3) Preliminary results showed that the study regions might have experienced several episodes of magnetic reversal events that were not recognized in existing models. (4) We are currently investigating the geomagnetic timing of these relatively short-duration events to determine the detailed spreading history of the sub-basins of the SCS. These high-resolution near-seafloor magnetic survey lines are located close to the planned drilling sites of IODP Expedition 349 scheduled for January-March 2014.

Radon and ammonia transects across the Cerro Prieto geothermal field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Semprini, L.; Kruger, P.

1981-01-01

Radon and ammonia transects, conducted at the Cerro Prieto geothermal field, involve measurement of concentration gradients at wells along lines of structural significance in the reservoir. Analysis of four transects showed radon concentrations ranging from 0.20 to 3.60 nCi/kg and ammonia concentrations from 17.6 to 59.3 mg/l. The data showed the lower concentrations in wells of lowest enthalpy fluid and the higher concentrations in wells of highest enthalpy fluid. Linear correlation analysis of the radon-enthalpy data indicated a strong relationship, with a marked influence by the two-phase conditions of the produced fluid. It appears that after phase separation in themore » reservoir, radon achieves radioactive equilibrium between fluid and rock, suggesting that the phase separation occurs well within the reservoir. A two-phase mixing model based on radon-enthalpy relations allows estimation of the fluid phase temperatures in the reservoir. Correlations of ammonia concentration with fluid enthalpy suggests an equilibrium partitioning model in which enrichment of ammonia correlates with higher enthalpy vapor.« less

Functional regeneration of the transected recurrent laryngeal nerve using a collagen scaffold loaded with laminin and laminin-binding BDNF and GDNF

PubMed Central

Wang, Baoxin; Yuan, Junjie; Chen, Xinwei; Xu, Jiafeng; Li, Yu; Dong, Pin

2016-01-01

Recurrent laryngeal nerve (RLN) injury remains a challenge due to the lack of effective treatments. In this study, we established a new drug delivery system consisting of a tube of Heal-All Oral Cavity Repair Membrane loaded with laminin and neurotrophic factors and tested its ability to promote functional recovery following RLN injury. We created recombinant fusion proteins consisting of brain-derived neurotrophic factor (BDNF) and glial cell line-derived neurotrophic factor (GDNF) fused to laminin-binding domains (LBDs) in order to prevent neurotrophin diffusion. LBD-BDNF, LBD-GDNF, and laminin were injected into a collagen tube that was fitted to the ends of the transected RLN in rats. Functional recovery was assessed 4, 8, and 12 weeks after injury. Although vocal fold movement was not restored until 12 weeks after injury, animals treated with the collagen tube loaded with laminin, LBD-BDNF and LBD-GDNF showed improved recovery in vocalisation, arytenoid cartilage angles, compound muscle action potentials and regenerated fibre area compared to animals treated by autologous nerve grafting (p < 0.05). These results demonstrate the drug delivery system induced nerve regeneration following RLN transection that was superior to that induced by autologus nerve grafting. It may have potential applications in nerve regeneration of RLN transection injury. PMID:27558932

Probable errors in width distributions of sea ice leads measured along a transect

NASA Technical Reports Server (NTRS)

Key, J.; Peckham, S.

1991-01-01

The degree of error expected in the measurement of widths of sea ice leads along a single transect are examined in a probabilistic sense under assumed orientation and width distributions, where both isotropic and anisotropic lead orientations are examined. Methods are developed for estimating the distribution of 'actual' widths (measured perpendicular to the local lead orientation) knowing the 'apparent' width distribution (measured along the transect), and vice versa. The distribution of errors, defined as the difference between the actual and apparent lead width, can be estimated from the two width distributions, and all moments of this distribution can be determined. The problem is illustrated with Landsat imagery and the procedure is applied to a submarine sonar transect. Results are determined for a range of geometries, and indicate the importance of orientation information if data sampled along a transect are to be used for the description of lead geometries. While the application here is to sea ice leads, the methodology can be applied to measurements of any linear feature.

Clinical use of endovenous indocyanine green during rectosigmoid segmental resection for endometriosis.

PubMed

Seracchioli, Renato; Raimondo, Diego; Arena, Alessandro; Zanello, Margherita; Mabrouk, Mohamed

2018-06-01

To describe a new use of endovenous indocyanine green (ICG) to allow real-time visualization of bowel perfusion in women with recto-sigmoid endometriosis who may be candidates for segmental resection. Step-by-step explanation of this method using descriptive text and educational video. Tertiary level referral academic center. A nulliparous 36-year-old woman affected by a large rectal endometriotic nodule was referred for severe dysmenorrhea, dyspareunia, hematochezia, and dyschezia, despite progestinic therapy. An intravenous injection of 1.5 mL solution containing 3.75 mg dose of ICG for intraoperative fluorescence imaging. Evaluation of blood perfusion of bowel and rectal endometriosis nodule. Evaluation of neoanastomosis vascularization after bowel resection. The procedure of endometriosis removal was performed using the daVinciXi surgical platform (Intuitive Surgical, Sunnyvale, CA). After ovarian endometriosis removal and adhesiolysis, we identified the endometriosis nodule on the anterior surface of the rectum. Pararectal, rectovaginal, and retrorectal spaces were dissected with a nerve-sparing technique. Indocyanine green was administered through a peripheral line. A near-infrared camera head enabled vision of the colorant after latency of a few seconds. We observed the ischemic area around the rectal nodule and perfusion areas upstream and downstream from the lesion. We selected the transecting line for rectal resection, taking account of this objective evaluation, beyond the limits of macroscopic disease. After direct mechanical anastomosis, we checked the rectal vascularization with ICG. To the best of our knowledge, this is the first reported use of endovenous ICG during a bowel resection for deep endometriosis. Endovenous ICG is proposed during surgery for rectosigmoid endometriosis to assess the perfusion of the bowel and select the transecting line. With ICG fluorescence imaging, we can objectively evaluate whether blood supply to the anastomosis is adequate. Endovenous ICG for objective vascular assessment is simple and rapid to use, and no complications related to ICG use were recorded. Copyright © 2018 American Society for Reproductive Medicine. Published by Elsevier Inc. All rights reserved.

Using spatiotemporal models and distance sampling to map the space use and abundance of newly metamorphosed Western Toads (Anaxyrus boreas)

USGS Publications Warehouse

Chelgren, Nathan D.; Samora, Barbara; Adams, Michael J.; McCreary, Brome

2011-01-01

High variability in abundance, cryptic coloration, and small body size of newly metamorphosed anurans have limited demographic studies of this life-history stage. We used line-transect distance sampling and Bayesian methods to estimate the abundance and spatial distribution of newly metamorphosed Western Toads (Anaxyrus boreas) in terrestrial habitat surrounding a montane lake in central Washington, USA. We completed 154 line-transect surveys from the commencement of metamorphosis (15 September 2009) to the date of first snow accumulation in fall (1 October 2009), and located 543 newly metamorphosed toads. After accounting for variable detection probability associated with the extent of barren habitats, estimates of total surface abundance ranged from a posterior median of 3,880 (95% credible intervals from 2,235 to 12,600) in the first week of sampling to 12,150 (5,543 to 51,670) during the second week of sampling. Numbers of newly metamorphosed toads dropped quickly with increasing distance from the lakeshore in a pattern that differed over the three weeks of the study and contradicted our original hypotheses. Though we hypothesized that the spatial distribution of toads would initially be concentrated near the lake shore and then spread outward from the lake over time, we observed the opposite. Ninety-five percent of individuals occurred within 20, 16, and 15 m of shore during weeks one, two, and three respectively, probably reflecting continued emergence of newly metamorphosed toads from the lake and mortality or burrow use of dispersed individuals. Numbers of toads were highest near the inlet stream of the lake. Distance sampling may provide a useful method for estimating the surface abundance of newly metamorphosed toads and relating their space use to landscape variables despite uncertain and variable probability of detection. We discuss means of improving the precision of estimates of total abundance.

Quantitative US Elastography Can Be Used to Quantify Mechanical and Histologic Tendon Healing in a Rabbit Model of Achilles Tendon Transection.

PubMed

Yamamoto, Yohei; Yamaguchi, Satoshi; Sasho, Takahisa; Fukawa, Taisuke; Akatsu, Yorikazu; Akagi, Ryuichiro; Yamaguchi, Tadashi; Takahashi, Kenji; Nagashima, Kengo; Takahashi, Kazuhisa

2017-05-01

Purpose To determine the time-dependent change in strain ratios (SRs) at the healing site of an Achilles tendon rupture in a rabbit model of tendon transection and to assess the correlation between SRs and the mechanical and histologic properties of the healing tissue. Materials and Methods Experimental methods were approved by the institutional animal care and use committee. The Achilles tendons of 24 New Zealand white rabbits (48 limbs) were surgically transected. The SRs of Achilles tendons were calculated by using compression-based quantitative ultrasonographic elastography measurements obtained 2, 4, 8, and 12 weeks after transection. After in vivo elastography, the left Achilles tendon was harvested for mechanical testing of ultimate load, ultimate stress, elastic modulus, and linear stiffness, and the right tendons were harvested for tissue histologic analysis with the Bonar scale. Time-dependent changes in SRs, mechanical parameters, and Bonar scale scores were evaluated by using repeated-measures analysis of variance. The correlation between SRs and each measured variable was evaluated by using the Spearman rank correlation coefficient. Results Mean SRs and Bonar scale values decreased as a function of time after transection, whereas mechanical parameters increased (P < .001). SR correlated with ultimate stress (ρ = 0.68, P <.001,) elastic modulus (ρ = 0.74, P <.001), and the Bonar scale (ρ = 0.87, P <.001). Conclusion Quantitative elastography could be a useful method with which to evaluate mechanical and histologic properties of the healing tendon. © RSNA, 2017 Online supplemental material is available for this article.

Rectal transection using a curved cutter stapler with an endo-Satinsky clamp during a laparoscopic low anterior resection.

PubMed

Hotta, Tsukasa; Takifuji, Katsunari; Yokoyama, Shozo; Matsuda, Kenji; Yamaue, Hiroki

2012-10-01

A new rectal transaction method was developed using a combination of the curved cutter stapler and endo-Satinsky clamp because of the difficulty in performing rectal transection in the narrow pelvic cavity. The endo-Satinsky clamp is inserted without a flexible trocar cannula by connecting the handle extra-abdominally with a shaft of the endo-Satinsky clamp through the left higher quadrant port via a retrograde course from a midline incision above the pubis symphysis. The endo-Satinsky clamp is used to clamp the rectal wall horizontally at the distal end of the tumor. The wrist of an elastic surgical glove fixed with the shaft of the curved cutter stapler is covered with a midline incision, and consequently, the stapler is inserted into the pelvic cavity. The curved head of the stapler is rotated to the left at the anal side of the endo-Satinsky clamp to insert the rectum between the jaws of the stapler. The stapler is closed and fired, and a rectal transection is thus performed with one firing using a single cartridge. This method was performed in 12 patients with rectal cancer. The median value and range of the tumor distance from the anal verge were 7.0 and 4.5-11.0 cm, respectively. The median duration of the operation was 252 min, and the median blood loss was 15 mL. Only one stapling cartridge was used for rectal transection in all cases, and no major complications were observed. We herein demonstrated a new transection method for rectal cancer.

Effect of Chorda Tympani Nerve Transection on Salt Taste Perception in Mice

PubMed Central

Ishiwatari, Yutaka; Theodorides, Maria L.; Bachmanov, Alexander A.

2011-01-01

Effects of gustatory nerve transection on salt taste have been studied extensively in rats and hamsters but have not been well explored in the mouse. We examined the effects of chorda tympani (CT) nerve transection on NaCl taste preferences and thresholds in outbred CD-1 mice using a high-throughput phenotyping method developed in our laboratory. To measure taste thresholds, mice were conditioned by oral self-administration of LiCl or NaCl and then presented with NaCl concentration series in 2-bottle preference tests. LiCl-conditioned and control NaCl-exposed mice were given bilateral transections of the CT nerve (LiCl-CTX, NaCl-CTX) or were left intact as controls (LiCl-CNT, NaCl-CNT). After recovery from surgery, mice received a concentration series of NaCl (0–300 mM) in 48-h 2-bottle tests. CT transection increased NaCl taste thresholds in LiCl-conditioned mice and eliminated avoidance of concentrated NaCl in control NaCl-exposed mice. This demonstrates that in mice, the CT nerve is important for detection and recognition of NaCl taste and is necessary for the normal avoidance of high concentrations of NaCl. The results of this experiment also show that the method of high-throughput phenotyping of salt taste thresholds is suitable for detecting changes in the taste periphery in mouse genetic studies. PMID:21743094

Abundance of sea cucumbers on the ecosystem of seagrasses Inunggeh island, Tapanuli Tengah Regency North Sumatera Province

NASA Astrophysics Data System (ADS)

Wisesa, M. M.; Bakti, D.; Fadhilah, A.

2018-02-01

Unggeh Island is one area that has the potential of Sea Cucumber in the North Sumatra. Sea cucumbers have an important role in ecosystem waters, namely as a deposit feeder. Sea cucumbers can live in shallow waters, such as seagrass ecosystems. The purpose of this study is to knowing the abundance of sea cucumbers in the seagrass ecosystems on the island of Unggeh and to knowing the type of Sea Cucumber. The method used is a transect quadrant method with a size of 5x5 meters, on a transect line with a length of 100 meters. Sampling was done at three points observations, station 1 was at coordinate point 01°34’26,88 "LU and 098°45’40,25" BT, station 2 was at coordinate point 01°34’32,71 "LU and 098°45’37, 58 "BT, station 3 is at the coordinate point 01°34’24,22" LU and 098°45’38,06 "BT. The type of sea cucumber found in the seagrass ecosystem on the Unggeh island Actinopyga ecinites, A. Miliaris, Holothuria scabra. The density at station 1 was 0.16 ind / m2, at station II a density was0.12 ind / m2, at station III a density was 0.08 ind / m2, and the total density at the research location was 0, 32 ind / m2.

Influence of observers and stream flow on northern two-lined salamander (Eurycea bislineata bislineata) relative abundance estimates in Acadia and Shenandoah National Parks, USA

USGS Publications Warehouse

Crocker, J.B.; Bank, M.S.; Loftin, C.S.; Jung Brown, R.E.

2007-01-01

We investigated effects of observers and stream flow on Northern Two-Lined Salamander (Eurycea bislineata bislineata) counts in streams in Acadia (ANP) and Shenandoah National Parks (SNP). We counted salamanders in 22 ANP streams during high flow (May to June 2002) and during low flow (July 2002). We also counted salamanders in SNP in nine streams during high flow (summer 2003) and 11 streams during low flow (summers 2001?02, 2004). In 2002, we used a modified cover-controlled active search method with a first and second observer. In succession, observers turned over 100 rocks along five 1-m belt transects across the streambed. The difference between observers in total salamander counts was not significant. We counted fewer E. b. bislineata during high flow conditions, confirming that detection of this species is reduced during high flow periods and that assessment of stream salamander relative abundance is likely more reliable during low or base flow conditions.

Processing data from soil assessment surveys with the computer program SOILS.

Treesearch

John W. Hazard; Jeralyn Snellgrove; J. Michael Geist

1985-01-01

Program SOILS processes data from soil assessment surveys following a design adopted by the Pacific Northwest Region of the USDA Forest Service. It accepts measurements from line transects and associated soil subsamples and generates estimates of the percentages of the sampled area falling in each soil condition class. Total disturbance is calculated by combining...

Effects of acidification on bryophyte communities in West Virginia mountain streams

Treesearch

Steven L. Stephenson; Susan Moyle Studlar; Carolyn J. McQuattie; Pamela J. Edwards

1995-01-01

Bryophytes (mosses and liverworts) are often more responsive to water chemistry changes than are vascular plants. In this study, the relationships of bryophyte communities to stream pH and water chemistry were studied, using six streams on or near the Fernow Experimental Forest in Tucker County, West Virginia. Streams were surveyed with line transects using stratified...

Evolution and hydration of the Juan de Fuca crust and uppermost mantle: a plate-scale seismic investigation from ridge to trench

NASA Astrophysics Data System (ADS)

Carbotte, S. M.; Canales, J.; Carton, H. D.; Nedimovic, M. R.; Han, S.; Marjanovic, M.; Gibson, J. C.; Janiszewski, H. A.; Horning, G.; Delescluse, M.; Watremez, L.; Farkas, A.; Biescas Gorriz, B.; Bornstein, G.; Childress, L. B.; Parker, B.

2012-12-01

The evolution of oceanic lithosphere involves incorporation of water into the physical and chemical structure of the crust and shallow mantle through fluid circulation, which initiates at the mid-ocean ridge and continues on the ridge flanks long after crustal formation. At subduction zones, water stored and transported with the descending plate is gradually released at depth, strongly influencing subduction zone processes. Cascadia is a young-lithosphere end member of the global subduction system where relatively little hydration of the downgoing Juan de Fuca (JdF) plate is expected due to its young age and presumed warm thermal state. However, numerous observations support the abundant presence of water within the subduction zone, suggesting that the JdF plate is significantly hydrated prior to subduction. Knowledge of the state of hydration of the JdF plate is limited, with few constraints on crustal and upper mantle structure. During the Cascadia Ridge-to-Trench experiment conducted in June-July 2012 over 4000 km of active source seismic data were acquired as part of a study of the evolution and state of hydration of the crust and shallow mantle of the JdF plate prior to subduction at the Cascadia margin. Coincident long-streamer (8 km) multi-channel seismic (MCS) and wide-angle ocean bottom seismometer (OBS) data were acquired in a two-ship program with the R/V Langseth (MGL1211), and R/V Oceanus (OC1206A). Our survey included two ridge-perpendicular transects across the full width of the JdF plate, a long trench-parallel line ~10 km seaward of the Cascadia deformation front, as well as three fan lines to study mantle anisotropy. The plate transects were chosen to provide reference sections of JdF plate evolution over the maximum range of JdF plate ages (8-9 Ma), offshore two contrasting regions of the Cascadia Subduction zone, and provide the first continuous ridge-to-trench images acquired at any oceanic plate. The trench-parallel line was designed to characterize variations in plate structure and hydration linked to JdF plate segmentation for over 450 km along the margin. Shipboard brute stacks of the MCS data reveal evidence for reactivation of abyssal hill faulting in the plate interior far from the trench. Ridgeward-dipping lower crustal reflectors are observed, similar to those observed in mature Pacific crust elsewhere, as well as conjugate reflectivity near the deformation front along the Oregon transect. Bright intracrustal reflectivity is also observed along the trench-parallel transect with marked changes in reflectivity along the Oregon and Washington margins. Initial inspection of the OBS record sections indicate good quality data with the expected oceanic crustal and upper mantle P-wave arrivals: Ps and Pg refractions through sedimentary and igneous layers, respectively, PmP wide-angle reflections from the crust-mantle transition zone, and Pn upper mantle refractions. The Pg-PmP-Pn triplication is typically observed at 40-50 km source-receiver offsets. Pn characteristics show evidence for upper mantle azimuthal anisotropic propagation: along the plate transects Pn is typically weaker and difficult to observe beyond ~80 km offsets, while along the trench-parallel transect Pn arrivals have higher amplitude and are easily observed up to source-receiver offsets of 160-180 km. An overview on the Cascadia Ridge to Trench data acquisition program and preliminary results will be presented.

Sampling design for long-term regional trends in marine rocky intertidal communities

USGS Publications Warehouse

Irvine, Gail V.; Shelley, Alice

2013-01-01

Probability-based designs reduce bias and allow inference of results to the pool of sites from which they were chosen. We developed and tested probability-based designs for monitoring marine rocky intertidal assemblages at Glacier Bay National Park and Preserve (GLBA), Alaska. A multilevel design was used that varied in scale and inference. The levels included aerial surveys, extensive sampling of 25 sites, and more intensive sampling of 6 sites. Aerial surveys of a subset of intertidal habitat indicated that the original target habitat of bedrock-dominated sites with slope ≤30° was rare. This unexpected finding illustrated one value of probability-based surveys and led to a shift in the target habitat type to include steeper, more mixed rocky habitat. Subsequently, we evaluated the statistical power of different sampling methods and sampling strategies to detect changes in the abundances of the predominant sessile intertidal taxa: barnacles Balanomorpha, the mussel Mytilus trossulus, and the rockweed Fucus distichus subsp. evanescens. There was greatest power to detect trends in Mytilus and lesser power for barnacles and Fucus. Because of its greater power, the extensive, coarse-grained sampling scheme was adopted in subsequent years over the intensive, fine-grained scheme. The sampling attributes that had the largest effects on power included sampling of “vertical” line transects (vs. horizontal line transects or quadrats) and increasing the number of sites. We also evaluated the power of several management-set parameters. Given equal sampling effort, sampling more sites fewer times had greater power. The information gained through intertidal monitoring is likely to be useful in assessing changes due to climate, including ocean acidification; invasive species; trampling effects; and oil spills.

The 2009-11 SAHKE Experiment: Preliminary 3D Vp imaging across the interseismically locked southern Hikurangi margin, Wellington, New Zealand

NASA Astrophysics Data System (ADS)

Henrys, S. A.; Wech, A.; Sato, H.; Stern, T. A.; Okaya, D. A.; Iwasaki, T.; Savage, M. K.; Mochizuki, K.; Kurashimo, E.; Sutherland, R.

2013-12-01

We present a preliminary 3D Vp model from the Seismic Array HiKurangi Experiment (SAHKE). This joint project involving New Zealand, Japan, and US institutions aims to investigate the subduction zone fault characteristics beneath Wellington. Situated above where the Pacific Plate is subducting beneath the Australian plate at a rate of c. 42 mm/yr, the Wellington region provides a unique opportunity to investigate the frictional properties, geometry, and seismic potential of a shallow, locked megathrust fault. Here the coupled plate interface is 20-30 km deep beneath land and can be sampled with onshore/offshore data from 3 sides. We have published a 2D Vp model [Henrys et al., 2013] incorporating coast-to-coast onshore-offshore transect of 50 stations and utilising first arrivals from 2000 offshore MCS shots on either side. The transect velocity model also combined first arrivals from 800 stations with 100 m spacing recorded from 12 in-line, 500 kg onshore dynamite explosions. We have expanded the transect data to now include (i) first arrivals from the dense temporary array of 50 seismometers with c. 7 km spacing augmented with 25 regional network instruments to record 49 local and 45 teleseismic earthquakes over a four month period and (ii), 69,000 offshore airgun shots from 17 MCS lines crisscrossing two sides of the array. We combine all shot and earthquake recordings to simultaneously invert c. 750,000 first arrivals for velocity structure and hypocenters in the densely sampled volume. First results from 3D, Vp tomography and relocated hypocenters provide improved resolution over previous studies. Our improved velocity model provides a high-resolution geometry of the subducting plate to support interpretation of other phases identified in SAHKE shot gathers and local earthquakes. Henrys, S., A. Wech, R. Sutherland, T. Stern, M. Savage, H. Sato, K. Mochizuki, T. Iwasaki, D. Okaya, A. Seward, B. Tozer, J. Townend, E. Kurashimo, T. Iidaka, and T. Ishiyama (2013), SAHKE geophysical transect reveals crustal and subduction zone structure at the southern Hikurangi margin, New Zealand, Geochemistry, Geophysics, Geosystems.

Evaluation of Scat Deposition Transects versus Radio Telemetry for Developing a Species Distribution Model for a Rare Desert Carnivore, the Kit Fox.

PubMed

Dempsey, Steven J; Gese, Eric M; Kluever, Bryan M; Lonsinger, Robert C; Waits, Lisette P

2015-01-01

Development and evaluation of noninvasive methods for monitoring species distribution and abundance is a growing area of ecological research. While noninvasive methods have the advantage of reduced risk of negative factors associated with capture, comparisons to methods using more traditional invasive sampling is lacking. Historically kit foxes (Vulpes macrotis) occupied the desert and semi-arid regions of southwestern North America. Once the most abundant carnivore in the Great Basin Desert of Utah, the species is now considered rare. In recent decades, attempts have been made to model the environmental variables influencing kit fox distribution. Using noninvasive scat deposition surveys for determination of kit fox presence, we modeled resource selection functions to predict kit fox distribution using three popular techniques (Maxent, fixed-effects, and mixed-effects generalized linear models) and compared these with similar models developed from invasive sampling (telemetry locations from radio-collared foxes). Resource selection functions were developed using a combination of landscape variables including elevation, slope, aspect, vegetation height, and soil type. All models were tested against subsequent scat collections as a method of model validation. We demonstrate the importance of comparing multiple model types for development of resource selection functions used to predict a species distribution, and evaluating the importance of environmental variables on species distribution. All models we examined showed a large effect of elevation on kit fox presence, followed by slope and vegetation height. However, the invasive sampling method (i.e., radio-telemetry) appeared to be better at determining resource selection, and therefore may be more robust in predicting kit fox distribution. In contrast, the distribution maps created from the noninvasive sampling (i.e., scat transects) were significantly different than the invasive method, thus scat transects may be appropriate when used in an occupancy framework to predict species distribution. We concluded that while scat deposition transects may be useful for monitoring kit fox abundance and possibly occupancy, they do not appear to be appropriate for determining resource selection. On our study area, scat transects were biased to roadways, while data collected using radio-telemetry was dictated by movements of the kit foxes themselves. We recommend that future studies applying noninvasive scat sampling should consider a more robust random sampling design across the landscape (e.g., random transects or more complete road coverage) that would then provide a more accurate and unbiased depiction of resource selection useful to predict kit fox distribution.

Benthic macroinvertebrate field sampling effort required to ...

EPA Pesticide Factsheets

This multi-year pilot study evaluated a proposed field method for its effectiveness in the collection of a benthic macroinvertebrate sample adequate for use in the condition assessment of streams and rivers in the Neuquén Province, Argentina. A total of 13 sites, distributed across three rivers, were sampled. At each site, benthic macroinvertebrates were collected at 11 transects. Each sample was processed independently in the field and laboratory. Based on a literature review and resource considerations, the collection of 300 organisms (minimum) at each site was determined to be necessary to support a robust condition assessment, and therefore, selected as the criterion for judging the adequacy of the method. This targeted number of organisms was collected at all sites, at a minimum, when collections from all 11 transects were combined. Subsequent bootstrapping analysis of data was used to estimate whether collecting at fewer transects would reach the minimum target number of organisms for all sites. In a subset of sites, the total number of organisms frequently fell below the target when fewer than 11 transects collections were combined.Site conditions where <300 organisms might be collected are discussed. These preliminary results suggest that the proposed field method results in a sample that is adequate for robust condition assessment of the rivers and streams of interest. When data become available from a broader range of sites, the adequacy of the field

77 FR 6065 - Takes of Marine Mammals Incidental to Specified Activities; Marine Geophysical Survey in the...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-07

... day public comment period. L-DEO plans to use one source vessel, the R/V Marcus G. Langseth (Langseth... (km) 1,511.9 nautical miles [nmi]) of transect lines (including turns) in the study area. The seismic... involve one source vessel, the Langseth. The Langseth will deploy an array of 36 airguns as an energy...

Physical, biotic, and sampling influences on diel habitat use by stream-dwelling bull trout

Treesearch

Nolan P. Banish; James T. Peterson; Russell F. Thurow

2008-01-01

We used daytime and nighttime underwater observation to assess microhabitat use by bull trout Salvelinus confluentus (N = 213) in streams of the intermountain western USA during the summers of 2001 and 2002. We recorded fish focal points and measured a set of habitat characteristics as well as habitat availability via line transects. Bull trout were...

Vegetation Types in Coastal Louisiana in 2007

USGS Publications Warehouse

Sasser, Charles E.; Visser, Jenneke M.; Mouton, Edmond; Linscombe, Jeb; Hartley, Steve B.

2008-01-01

During the summer and fall of 2007, the U.S. Geological Survey, the Louisiana State University Agricultural Center, and the Louisiana Department of Wildlife and Fisheries Fur and Refuge Division jointly completed an aerial survey to collect data on 2007 vegetation types in coastal Louisiana. The current map presents the data collected in this effort. The 2007 aerial survey was conducted by using techniques developed over the last thirty years while conducting similar vegetation surveys. Transects flown were oriented in a north-south direction and spaced 1.87 mi (3 km) apart and covered coastal marshes from the Texas State line to the Mississippi State line and from the northern extent of fresh marshes to the southern end of saline (saltwater) marshes on the beaches of the Gulf of Mexico or of coastal bays. Navigation along these transects and to each sampling site was accomplished by using Global Positioning System (GPS) technology and geographic information system (GIS) software. As the surveyors reached each sampling station, observed areas of marsh were assigned as fresh, intermediate, brackish, or saline (saltwater) types, and dominant plant species were listed and ranked according to abundance. Delineations of marsh boundaries usually followed natural levees, bayous, or other features that impede or restrict water flow.

Contributions of climate change to the boundary shifts in the farming-pastoral ecotone in northern China since 1970

NASA Astrophysics Data System (ADS)

Shi, W.; Liu, Y.; Shi, X.

2017-12-01

Critical transitions of farming-pastoral ecotone (FPE) boundaries can be affected by climate change and human activities, yet current studies have not adequately analyzed the spatially explicit contributions of climate change to FPE boundary shifts, particularly those in different regions and periods. In this study, we present a series of analyses at the point (gravity center analysis), line (boundary shifts detected using two methods) and area (spatial analysis) levels to quantify climate contributions at the 1 km scale in each ecological functional region during three study periods from the 1970s to the 2000s using climate and land use data. Both gravity center analysis and boundary shift detection reveal similar spatial patterns, with more extensive boundary shifts in the northeastern and southeastern parts of the FPE in northern China, especially during the 1970s-1980s and 1990s-2000s. Climate contributions in the X- and Y-coordinate directions and in the directions of transects along boundaries show that significant differences in climate contributions to FPE boundary shifts exist in different ecological regions during the three periods. Additionally, the results in different directions exhibit good agreement in most of the ecological functional regions during most of the periods. However, the contribution values in the directions of transects along the boundaries (with 1-17%) were always smaller than those in the X-and Y-coordinate directions (4-56%), which suggests that the analysis in the transect directions is more stable and reasonable. Thus, this approach provides an alternative method for detecting the climate contributions to boundary shifts associated with land use changes. Spatial analysis of the relationship between climate change and land use change in the context of FPE boundary shifts in northern China provides further evidence and explanation of the driving forces of climate change. Our findings suggest that an improved understanding of the quantitative contributions of climate change to the formation and transition of the FPE in northern China is essential for addressing current and future adaptation and mitigation measures and regional land use management.

Pockmarks, fluid flow, and sediments outboard of the deformation front at the Cascadia Subduction Zone from analysis of multi-channel seismic and multi-beam sonar data

NASA Astrophysics Data System (ADS)

Gibson, J. C.; Carbotte, S. M.; Han, S.; Carton, H. D.; Canales, P.; Nedimovic, M. R.

2013-12-01

Evidence of active fluid flow and the nature of the sediment section near the Cascadia deformation front are explored using multi-channel (MCS) seismic and multi-beam sonar data collected in summer 2012 using the R/V Marcus G. Langseth during the Juan de Fuca Ridge to Trench Survey. The MCS data were collected along two full plate transects (the 'Oregon' and 'Washington' transects) and one trench parallel line using a 6600 cubic inch source, and an 8 km streamer with 636 channels (12.5 m spacing). The MCS data pre-stack processing sequence includes geometry definition, trace editing, F-K filter, and deconvolution. Velocity analysis is performed via semblance and constant velocity stacks in order to create a velocity model of the sediments and upper oceanic crust. The traces are then stacked, and post-stack time migrated. The sonar data were collected using the R/V Langseth's Kongsberg EM122 1°x1° multi-beam sonar with 288 beams and 432 total soundings across track. Using MB-system the sonar data are cleaned, and the bathymetry data are then gridded at 35 m, while the backscatter data are gridded at 15 m. From the high-resolution mapping data 48 pockmarks varying in diameter from 50 m - 1 km are identified within 60 km outboard of the deformation front. The surface expression of these large features in an area of heavy sedimentation is likely indicative of active fluid flow. In order to gain sub-seafloor perspective on these features the MCS data are draped below the bathymetry/backscatter grids using QPS Fledermaus. From this perspective, specific locations for detailed velocity and attribute analysis of the sediment section are chosen. Sediment velocity and attribute analysis also provide insight into apparent differences in the sediment section and décollement formation along the Oregon and Washington plate transects. While both lines intersect areas of dense pockmark concentration, the area around the Oregon transect has been shown to contain a continuous positive polarity sedimentary layer that is capping fluid expulsion above a reverse polarity protodécollement (e.g. Cochrane et al., 1994, JGR, 99, pp. 7033-7043). A décollement within the sediment section is not present along the Washington line (e.g. Gutscher et al., 2001, Geology, 29, pp. 379-382). However, this line does intersect the 'Bare' outcrops to the west, which have been shown to provide fluid recharge and discharge pathways for convective cooling of the crust (e.g. Fisher et al., 2003, Nature, 421, pp. 618-621). Detailed velocity models constructed from the MCS data will be used to investigate these regional differences. The location of the pockmarks and corresponding sediment properties will also be explored relative to regional variations in the structure of the deformation front and location of intraplate and interplate faulting.

Performance of quantitative vegetation sampling methods across gradients of cover in Great Basin plant communities

USGS Publications Warehouse

Pilliod, David S.; Arkle, Robert S.

2013-01-01

Resource managers and scientists need efficient, reliable methods for quantifying vegetation to conduct basic research, evaluate land management actions, and monitor trends in habitat conditions. We examined three methods for quantifying vegetation in 1-ha plots among different plant communities in the northern Great Basin: photography-based grid-point intercept (GPI), line-point intercept (LPI), and point-quarter (PQ). We also evaluated each method for within-plot subsampling adequacy and effort requirements relative to information gain. We found that, for most functional groups, percent cover measurements collected with the use of LPI, GPI, and PQ methods were strongly correlated. These correlations were even stronger when we used data from the upper canopy only (i.e., top “hit” of pin flags) in LPI to estimate cover. PQ was best at quantifying cover of sparse plants such as shrubs in early successional habitats. As cover of a given functional group decreased within plots, the variance of the cover estimate increased substantially, which required more subsamples per plot (i.e., transect lines, quadrats) to achieve reliable precision. For GPI, we found that that six–nine quadrats per hectare were sufficient to characterize the vegetation in most of the plant communities sampled. All three methods reasonably characterized the vegetation in our plots, and each has advantages depending on characteristics of the vegetation, such as cover or heterogeneity, study goals, precision of measurements required, and efficiency needed.

[Nested species subsets of amphibians and reptiles in Thousand Island Lake].

PubMed

Wang, Xi; Wang, Yan-Ping; Ding, Ping

2012-10-01

Habitat fragmentation is a main cause for the loss of biological diversity. Combining line-transect methods to survey the amphibians and reptiles on 23 islands on Thousand Island Lake in Zhejiang province, along with survey data on nearby plant species and habitat variables collected by GIS, we used the"BINMATNEST (binary matrix nestedness temperature calculator)" software and the Spearman rank correlation to examine whether amphibians and reptiles followed nested subsets and their influencing factors. The results showed that amphibians and reptiles were significantly nested, and that the island area and habitat type were significantly associated with their nested ranks. Therefore, to effectively protect amphibians and reptiles in the Thousand Islands Lake area we should pay prior attention to islands with larger areas and more habitat types.

Analysis of stable isotope ratios (δ18O and δ2H) in precipitation of the Verde River watershed, Arizona 2003 through 2014

USGS Publications Warehouse

Beisner, Kimberly R.; Paretti, Nicholas V.; Tucci, Rachel S.

2016-04-25

Stable isotope delta values (δ18O and δ2H) of precipitation can vary with elevation, and quantification of the precipitation elevation gradient can be used to predict recharge elevation within a watershed. Precipitation samples were analyzed for stable isotope delta values between 2003 and 2014 from the Verde River watershed of north-central Arizona. Results indicate a significant decrease in summer isotopic values overtime at 3,100-, 4,100-, 6,100-, 7,100-, and 8,100-feet elevation. The updated local meteoric water line for the area is δ2H = 7.11 δ18O + 3.40. Equations to predict stable isotopic values based on elevation were updated from previous publications in Blasch and others (2006), Blasch and Bryson (2007), and Bryson and others (2007). New equations were separated for samples from the Camp Verde to Flagstaff transect and the Prescott to Chino Valley transect. For the Camp Verde to Flagstaff transect, the new equations for winter precipitation are δ18O = -0.0004z − 8.87 and δ2H = -0.0029z − 59.8 (where z represents elevation in feet) and the summer precipitation equations were not statistically significant. For the Prescott to Chino Valley transect, the new equations for summer precipitation are δ18O = -0.0005z − 3.22 and δ2H = -0.0022z − 27.9; the winter precipitation equations were not statistically significant and, notably, stable isotope values were similar across all elevations. Interpretation of elevation of recharge contributing to surface and groundwaters in the Verde River watershed using the updated equations for the Camp Verde to Flagstaff transect will give lower elevation values compared with interpretations presented in the previous studies. For waters in the Prescott and Chino Valley area, more information is needed to understand local controls on stable isotope values related to elevation.

Estimating the abundance of the Southern Hudson Bay polar bear subpopulation with aerial surveys

USGS Publications Warehouse

Obbard, Martyn E.; Stapleton, Seth P.; Middel, Kevin R.; Thibault, Isabelle; Brodeur, Vincent; Jutras, Charles

2015-01-01

The Southern Hudson Bay (SH) polar bear subpopulation occurs at the southern extent of the species’ range. Although capture–recapture studies indicate abundance was likely unchanged between 1986 and 2005, declines in body condition and survival occurred during the period, possibly foreshadowing a future decrease in abundance. To obtain a current estimate of abundance, we conducted a comprehensive line transect aerial survey of SH during 2011–2012. We stratified the study site by anticipated densities and flew coastal contour transects and systematically spaced inland transects in Ontario and on Akimiski Island and large offshore islands in 2011. Data were collected with double-observer and distance sampling protocols. We surveyed small islands in James Bay and eastern Hudson Bay and flew a comprehensive transect along the Québec coastline in 2012. We observed 667 bears in Ontario and on Akimiski Island and nearby islands in 2011, and we sighted 80 bears on offshore islands during 2012. Mark–recapture distance sampling and sight–resight models yielded an estimate of 860 (SE = 174) for the 2011 study area. Our estimate of abundance for the entire SH subpopulation (943; SE = 174) suggests that abundance is unlikely to have changed significantly since 1986. However, this result should be interpreted cautiously because of the methodological differences between historical studies (physical capture–recapture) and this survey. A conservative management approach is warranted given previous increases in duration of the ice-free season, which are predicted to continue in the future, and previously documented declines in body condition and vital rates.

Estimating abundance of the Southern Hudson Bay polar bear subpopulation using aerial surveys, 2011 and 2012

USGS Publications Warehouse

Obbard, Martyn E.; Middel, Kevin R.; Stapleton, Seth P.; Thibault, Isabelle; Brodeur, Vincent; Jutras, Charles

2013-01-01

The Southern Hudson Bay (SH) polar bear subpopulation occurs at the southern extent of the species’ range. Although capture-recapture studies indicate that abundance remained stable between 1986 and 2005, declines in body condition and survival were documented during the period, possibly foreshadowing a future decrease in abundance. To obtain a current estimate of abundance, we conducted a comprehensive line transect aerial survey of SH during 2011–2012. We stratified the study site by anticipated densities and flew coastal contour transects and systematically spaced inland transects in Ontario and on Akimiski Island and large offshore islands in 2011. Data were collected with double observer and distance sampling protocols. We also surveyed small islands in Hudson Bay and James Bay and flew a comprehensive transect along the Québec coastline in 2012. We observed 667 bears in Ontario and on Akimiski Island and nearby islands in 2011, and we sighted 80 bears on offshore islands during 2012. Mark-recapture distance sampling and sightresight models yielded a model-averaged estimate of 868 (SE: 177) for the 2011 study area. Our estimate of abundance for the entire SH subpopulation (951; SE: 177) suggests that abundance has remained unchanged. However, this result should be interpreted cautiously because of the methodological differences between historical studies (physical capture) and this survey. A conservative management approach is warranted given the previous increases in the duration of the ice-free season, which are predicted to continue in the future, and previously documented declines in body condition and vital rates.

Mass discharge in a tracer plume: Evaluation of the Theissen Polygon Method

PubMed Central

Mackay, Douglas M.; Einarson, Murray D.; Kaiser, Phil M.; Nozawa-Inoue, Mamie; Goyal, Sham; Chakraborty, Irina; Rasa, Ehsan; Scow, Kate M.

2013-01-01

A tracer plume was created within a thin aquifer by injection for 299 days of two adjacent “sub-plumes” to represent one type of plume heterogeneity encountered in practice. The plume was monitored by snapshot sampling of transects of fully screened wells. The mass injection rate and total mass injected were known. Using all wells in each transect (0.77 m well spacing, 1.4 points/m2 sampling density), the Theissen Polygon Method (TPM) yielded apparently accurate mass discharge (Md) estimates at 3 transects for 12 snapshots. When applied to hypothetical sparser transects using subsets of the wells with average spacing and sampling density from 1.55 to 5.39 m and 0.70 to 0.20 points/m2, respectively, the TPM accuracy depended on well spacing and location of the wells in the hypothesized transect with respect to the sub-plumes. Potential error was relatively low when the well spacing was less than the widths of the sub-plumes (> 0.35 points/m2). Potential error increased for well spacing similar to or greater than the sub-plume widths, or when less than 1% of the plume area was sampled. For low density sampling of laterally heterogeneous plumes, small changes in groundwater flow direction can lead to wide fluctuations in Md estimates by the TPM. However, sampling conducted when flow is known or likely to be in a preferred direction can potentially allow more useful comparisons of Md over multiyear time frames, such as required for performance evaluation of natural attenuation or engineered remediation systems. PMID:22324777

Estimating the quadratic mean diameter of fine woody debris for forest type groups of the United States

Treesearch

Christopher W. Woodall; Vicente J. Monleon

2009-01-01

The Forest Inventory and Analysis program of the Forest Service, U.S. Department of Agriculture conducts a national inventory of fine woody debris (FWD); however, the sampling protocols involve tallying only the number of FWD pieces by size class that intersect a sampling transect with no measure of actual size. The line intersect estimator used with those samples...

Statistical methods for identifying and bounding a UXO target area or minefield

DOE Office of Scientific and Technical Information (OSTI.GOV)

McKinstry, Craig A.; Pulsipher, Brent A.; Gilbert, Richard O.

2003-09-18

The sampling unit for minefield or UXO area characterization is typically represented by a geographical block or transect swath that lends itself to characterization by geophysical instrumentation such as mobile sensor arrays. New spatially based statistical survey methods and tools, more appropriate for these unique sampling units have been developed and implemented at PNNL (Visual Sample Plan software, ver. 2.0) with support from the US Department of Defense. Though originally developed to support UXO detection and removal efforts, these tools may also be used in current form or adapted to support demining efforts and aid in the development of newmore » sensors and detection technologies by explicitly incorporating both sampling and detection error in performance assessments. These tools may be used to (1) determine transect designs for detecting and bounding target areas of critical size, shape, and density of detectable items of interest with a specified confidence probability, (2) evaluate the probability that target areas of a specified size, shape and density have not been missed by a systematic or meandering transect survey, and (3) support post-removal verification by calculating the number of transects required to achieve a specified confidence probability that no UXO or mines have been missed.« less

Early changes in muscle atrophy and muscle fiber type conversion after spinal cord transection and peripheral nerve transection in rats.

PubMed

Higashino, Kosaku; Matsuura, Tetsuya; Suganuma, Katsuyoshi; Yukata, Kiminori; Nishisho, Toshihiko; Yasui, Natsuo

2013-05-20

Spinal cord transection and peripheral nerve transection cause muscle atrophy and muscle fiber type conversion. It is still unknown how spinal cord transection and peripheral nerve transection each affect the differentiation of muscle fiber type conversion mechanism and muscle atrophy. The aim of our study was to evaluate the difference of muscle weight change, muscle fiber type conversion, and Peroxisome proliferator-activated receptor-γ coactivatior-1α (PGC-1α) expression brought about by spinal cord transection and by peripheral nerve transection. Twenty-four Wistar rats underwent surgery, the control rats underwent a laminectomy; the spinal cord injury group underwent a spinal cord transection; the denervation group underwent a sciatic nerve transection. The rats were harvested of the soleus muscle and the TA muscle at 0 week, 1 week and 2 weeks after surgery. Histological examination was assessed using hematoxylin and eosin (H&E) staining and immunofluorescent staing. Western blot was performed with 3 groups. Both sciatic nerve transection and spinal cord transection caused muscle atrophy with the effect being more severe after sciatic nerve transection. Spinal cord transection caused a reduction in the expression of both sMHC protein and PGC-1α protein in the soleus muscle. On the other hand, sciatic nerve transection produced an increase in expression of sMHC protein and PGC-1α protein in the soleus muscle. The results of the expression of PGC-1α were expected in other words muscle atrophy after sciatic nerve transection is less than after spinal cord transection, however muscle atrophy after sciatic nerve transection was more severe than after spinal cord transection. In the conclusion, spinal cord transection diminished the expression of sMHC protein and PGC-1α protein in the soleus muscle. On the other hand, sciatic nerve transection enhanced the expression of sMHC protein and PGC-1α protein in the soleus muscle.

Arctic tree-line reproduction in Canada and Siberia: Possible greenhouse effect?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nichols, H.

1997-12-31

The arctic tree-line is sensitive to climatic changes as indicated by paleo-ecological studies, and it is predicted to respond strongly to global warming. Northern Canadian studies of tree-line reproduction spanning two decades demonstrate a widespread switch from infertility due to cold summers (early 1970`s) to pollen and cone production (1990s), in line with greenhouse warming predictions. Ecotonal cone formation is usually sporadic and localized, but this largescale reproductive shift, along a 1500 km transect, suggests widespread climatic warming since the 1970s. These Siberian studies (at 27 sites) represented only a modest fraction of the Eurasian tree-line, but the widespread fertilitymore » at so many locations, plus the extensive Canadian evidence, suggests that the predicted polar warming may be responsible. Whether this is due to natural or anthropogenic climatic change, and whether it will be short or long-term, is unclear, and merits further study.« less

High population density of black-handed spider monkeys (Ateles geoffroyi) in Costa Rican lowland wet forest.

PubMed

Weghorst, Jennifer A

2007-04-01

The main objective of this study was to estimate the population density and demographic structure of spider monkeys living in wet forest in the vicinity of Sirena Biological Station, Corcovado National Park, Costa Rica. Results of a 14-month line-transect survey showed that spider monkeys of Sirena have one of the highest population densities ever recorded for this genus. Density estimates varied, however, depending on the method chosen to estimate transect width. Data from behavioral monitoring were available to compare density estimates derived from the survey, providing a check of the survey's accuracy. A combination of factors has most probably contributed to the high density of Ateles, including habitat protection within a national park and high diversity of trees of the fig family, Moraceae. Although natural densities of spider monkeys at Sirena are substantially higher than those recorded at most other sites and in previous studies at this site, mean subgroup size and age ratios were similar to those determined in previous studies. Sex ratios were similar to those of other sites with high productivity. Although high densities of preferred fruit trees in the wet, productive forests of Sirena may support a dense population of spider monkeys, other demographic traits recorded at Sirena fall well within the range of values recorded elsewhere for the species.

Abundance and density of lesser prairie-chickens and leks in Texas

USGS Publications Warehouse

Timmer, Jennifer M.; Butler, M.J.; Ballard, Warren; Boal, Clint W.; Whitlaw, Heather A.

2013-01-01

Lesser prairie-chickens (LEPCs; Tympanuchus pallidicinctus) have experienced population declines due to both direct and indirect habitat loss, including conversion of native rangeland to cropland and disturbance from energy development. Our objectives were to 1) determine the current density of LEPC leks and LEPCs within the Texas (USA) occupied range, including areas with high potential for wind-energy development; and 2) find new leks. To estimate lek and LEPC density, we employed a line-transect-based aerial survey method using a Robinson 22 helicopter to count leks. We surveyed 26,810.9 km of transect in the spring of 2010 and 2011 and we detected 96 leks. We estimated a density of 2.0 leks/100 km(2) (90% CI = 1.4-2.7 leks/100 km(2)) and 12.3 LEPCs/100 km(2) (90% CI = 8.5-17.9 LEPCs/100 km(2)) and an abundance of 293.6 leks (90% CI = 213.9-403.0 leks) and 1,822.4 LEPCs (90% CI = 1,253.7-2,649.1 LEPCs) for our sampling frame. Our best model indicated that lek size and lek type (AIC(c) wt = 0.235) influenced lek detectability. Lek detectability was greater for larger leks and natural leks versus man-made leks. Our statewide survey efforts provide wildlife managers and biologists with population estimates, new lek locations, and areas to target for monitoring and conservation.

Water-level, borehole geophysical log, and water-quality data from wells transecting the freshwater/saline-water interface of the San Antonio segment of the Edwards Aquifer, South-Central Texas, 1999-2007

USGS Publications Warehouse

Lambert, Rebecca B.; Hunt, Andrew G.; Stanton, Gregory P.; Nyman, Michael B.

2009-01-01

As a part of a 9-year (1999-2007) study done by the U.S. Geological Survey in cooperation with the San Antonio Water System to improve understanding of the San Antonio segment of the Edwards aquifer, south-central Texas, in and near the freshwater/saline-water transition zone of the aquifer, the U.S. Geological Survey collected water-level, borehole geophysical, and water-quality data during 1999-2007 from 37 wells arranged in nine transects (except for two wells) across the freshwater/saline-water interface of the aquifer. This report presents the data collected and also describes the data-collection, analytical, and quality-assurance methods used. The wells, constructed with casing from land surface into the upper part of the aquifer and completed as open hole in the aquifer, are in Uvalde County (East Uvalde transect), in Medina County (South Medina and Devine wells), in Bexar County (Pitluk, Mission, and San Antonio transects), in Comal and Guadalupe Counties (Tri-County transect), in Comal County (New Braunfels transect), and in Hays County (Fish Hatchery, San Marcos, and Kyle transects). Data collected included continuous water level at 18 wells; fluid electrical conductivity and temperature with depth (fluid profiles) obtained by borehole geophysical logging of 15 wells; discrete (periodic) samples for major ions and trace elements at 36 wells; stable isotopes or stable isotopes and tritium at 27 wells; dissolved gases obtained by pumping (or collecting flow) of 19 wells; and continuous specific conductance and temperature at three of the wells equipped with continuous water-level sensors.

Dataset of Passerine bird communities in a Mediterranean high mountain (Sierra Nevada, Spain).

PubMed

Pérez-Luque, Antonio Jesús; Barea-Azcón, José Miguel; Álvarez-Ruiz, Lola; Bonet-García, Francisco Javier; Zamora, Regino

2016-01-01

In this data paper, a dataset of passerine bird communities is described in Sierra Nevada, a Mediterranean high mountain located in southern Spain. The dataset includes occurrence data from bird surveys conducted in four representative ecosystem types of Sierra Nevada from 2008 to 2015. For each visit, bird species numbers as well as distance to the transect line were recorded. A total of 27847 occurrence records were compiled with accompanying measurements on distance to the transect and animal counts. All records are of species in the order Passeriformes. Records of 16 different families and 44 genera were collected. Some of the taxa in the dataset are included in the European Red List. This dataset belongs to the Sierra Nevada Global-Change Observatory (OBSNEV), a long-term research project designed to compile socio-ecological information on the major ecosystem types in order to identify the impacts of global change in this area.

Dataset of Passerine bird communities in a Mediterranean high mountain (Sierra Nevada, Spain)

PubMed Central

Pérez-Luque, Antonio Jesús; Barea-Azcón, José Miguel; Álvarez-Ruiz, Lola; Bonet-García, Francisco Javier; Zamora, Regino

2016-01-01

Abstract In this data paper, a dataset of passerine bird communities is described in Sierra Nevada, a Mediterranean high mountain located in southern Spain. The dataset includes occurrence data from bird surveys conducted in four representative ecosystem types of Sierra Nevada from 2008 to 2015. For each visit, bird species numbers as well as distance to the transect line were recorded. A total of 27847 occurrence records were compiled with accompanying measurements on distance to the transect and animal counts. All records are of species in the order Passeriformes. Records of 16 different families and 44 genera were collected. Some of the taxa in the dataset are included in the European Red List. This dataset belongs to the Sierra Nevada Global-Change Observatory (OBSNEV), a long-term research project designed to compile socio-ecological information on the major ecosystem types in order to identify the impacts of global change in this area. PMID:26865820

Surface-Wave Tomography of Yucca Flat, Nevada

NASA Astrophysics Data System (ADS)

Toney, L. D.; Abbott, R. E.; Knox, H. A.; Preston, L. A.; Hoots, C. R.

2016-12-01

In 2015, Sandia National Laboratories conducted an active-source seismic survey of Yucca Flat, Nevada, on the Nevada National Security Site. The Yucca Flat basin hosted over 900 nuclear tests between 1951 and 1992. Data from this survey will help characterize seismic propagation effects of the area, informing models for the next phase of the Source Physics Experiments. The survey source was a 13,000-kg weight-drop at 91 locations along a 19-km N-S transect and 56 locations along an 11-km E-W transect. Over 350 three-component 2-Hz geophones were variably spaced at 10, 20, and 100 m along each line. We employed roll-along survey geometry to ensure 10-m receiver spacing within 2 km of the source. Phase velocity surface-wave analysis via the refraction-microtremor (ReMi) method was previously performed on this data in order to obtain an S-wave velocity model of the subsurface. However, the results of this approach were significantly impacted in areas where ray paths were proximate to underground nuclear tests, resulting in a spatially incomplete model. We have processed the same data utilizing group velocities and the multiple filter technique (MFT), with the hope that the propagation of wave groups is less impacted by the disrupted media surrounding former tests. We created a set of 30 Gaussian band-pass filters with scaled relative passbands and central frequencies ranging from 1 to 50 Hz. We picked fundamental Rayleigh wave arrivals from the filtered data; these picks were then inverted for 2D S-wave velocity along the transects. The new S-wave velocity model will be integrated with previous P-wave tomographic results to yield a more complete model of the subsurface structure of Yucca Flat. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Report for borehole explosion data acquired in the 1999 Los Angeles Region Seismic Experiment (LARSE II), Southern California: Part I, description of the survey

USGS Publications Warehouse

Fuis, Gary S.; Murphy, Janice M.; Okaya, David A.; Clayton, Robert W.; Davis, Paul M.; Thygesen, Kristina; Baher, Shirley A.; Ryberg, Trond; Benthien, Mark L.; Simila, Gerry; Perron, J. Taylor; Yong, Alan K.; Reusser, Luke; Lutter, William J.; Kaip, Galen; Fort, Michael D.; Asudeh, Isa; Sell, Russell; Van Schaack, John R.; Criley, Edward E.; Kaderabek, Ronald; Kohler, Will M.; Magnuski, Nickolas H.

2001-01-01

The Los Angeles Region Seismic Experiment (LARSE) is a joint project of the U.S. Geological Survey (USGS) and the Southern California Earthquake Center (SCEC). The purpose of this project is to produce seismic images of the subsurface of the Los Angeles region down to the depths at which earthquakes occur, and deeper, in order to remedy a deficit in our knowledge of the deep structure of this region. This deficit in knowledge has persisted despite over a century of oil exploration and nearly 70 years of recording earthquakes in southern California. Understanding the deep crustal structure and tectonics of southern California is important to earthquake hazard assessment. Specific imaging targets of LARSE include (a) faults, especially blind thrust faults, which cannot be reliably detected any other way; and (b) the depths and configurations of sedimentary basins. Imaging of faults is important in both earthquake hazard assessment but also in modeling earthquake occurrence. Earthquake occurrence cannot be understood unless the earthquake-producing "machinery" (tectonics) is known (Fuis and others, 2001). Imaging the depths and configurations of sedimentary basins is important because earthquake shaking at the surface is enhanced by basin depth and by the presence of sharp basin edges (Wald and Graves, 1998, Working Group on California Earthquake Probabilities, 1995; Field and others, 2001). (Sedimentary basins are large former valleys now filled with sediment eroded from nearby mountains.) Sedimentary basins in the Los Angeles region that have been investigated by LARSE include the Los Angeles, San Gabriel Valley, San Fernando Valley, and Santa Clarita Valley basins. The seismic imaging surveys of LARSE include recording of earthquakes (both local and distant earthquakes) along several corridors (or transects) through the Los Angeles region and also recording of man-made sources along these same corridors. Man-made sources have included airguns offshore and borehole explosions and vibrating-truck sources onshore. The two chief LARSE transects pass near recent moderate earthquakes, including the 1971 M 6.7 San Fernando, 1987 M 5.9 Whittier Narrows, 1991 M 5.8 Sierra Madre, and 1994 M 6.7 Northridge earthquakes. The first transect extended from San Clemente Island northeastward to the Mojave Desert (Line 1, Fig. 1), passing near the epicenter of the Whittier Narrows and Sierra Madre earthquakes. The second transect extended from west of San Clemente Island northward to the western Mojave Desert (Line 2, Figs. 1, 2), passing through the epicenter of the Northridge earthquake and near the epicenter of the San Fernando earthquake. Data along Line 1 were acquired during the years 1993-1994, and data along Line 2, during the years 1994–2000. In this open-file report and that of Murphy and others (in preparation), we present the details of the October 1999 explosion survey along Line 2, which extended from Santa Monica Bay northward to the western Mojave Desert (Figs. 1, 2). This survey is referred to as LARSE II. In this survey, 93 borehole explosions were detonated along the main north-south line and along 5 auxiliary lines in the San Fernando Valley and Santa Monica areas. These explosions were recorded by ~1400 seismographs. A variety of seismic instrumentation was used in these imaging surveys and was obtained from collaborators from around the world, including the Geological Survey of Canada (Ottawa, Canada), IRIS/PASSCAL (Socorro, NM), Lamont-Doherty Earth Observatory (Palisades, NY), Stanford University (Stanford, CA), SCEC (Los Angeles, CA), USGS (Menlo Park, CA, and Woods Hole, MA), University of Texas at El Paso (El Paso, TX), GeoForschungsZentrum (Potsdam, Germany), University of Karlsruhe (Karlsruhe, Germany), and University of Copenhagen (Copenhagen, Denmark). The reader is referred to Table 1 for instrumentation used in LARSE II.

Stirring by deep cyclones and the evolution of Denmark strait overflow water observed at line W

NASA Astrophysics Data System (ADS)

Andres, M.; Toole, J. M.; Torres, D. J.; Smethie, W. M.; Joyce, T. M.; Curry, R. G.

2016-03-01

Shipboard velocity and water property data from 18 transects across the North Atlantic Deep Western Boundary Current (DWBC) near 40 °N are examined to study the evolution of the Denmark Strait Overflow Water (DSOW) component of the DWBC and mixing between DSOW and the interior. The examined transects along Line W - which stretches from the continental shelf south of New England to Bermuda - were made between 1994 and 2014. The shipboard data comprise measurements at regular stations of velocity from lowered acoustic Doppler current profilers, CTD profiles and trace gas chlorofluorocarbon (CFC) concentrations from bottle samples at discrete depths. Comparison of the Line W velocity sections with concurrent sea surface height maps from satellite altimetry indicates that large cyclones in the deep ocean accompany intermittent quasi-stationary meander troughs in the Gulf Stream path at Line W. A composite of 5 velocity sections along Line W suggests that a typical cyclone reaches swirl speeds of greater than 30 cm s-1 at 3400-m depth and has a radius (distance between the center and the maximum velocity) of 75 km. Tracer data suggest that these cyclones affect not only the deep velocity structure along Line W, but also provide a mechanism for water exchange between the DWBC's DSOW and the interior. Vigorous exchange is corroborated by a mismatch in the CFC-11:CFC-12 and CFC-113:CFC-12 ratio ages calculated for DSOW at Line W. During the most recent 5-year period (2010-2014), a decrease in DSOW density has been driven by warming (increasing by almost 0.1 °C) as salinity has increased only slightly (by 0.003, which is close to the 0.002 uncertainty of the measurements). The abyssal ocean offshore of the DWBC and Gulf Stream and deeper than 3000-m depth has freshened at a rate of 6×10-4 yr-1 since at least 2003. Density here remains nearly unchanged over this period, due to temperature compensation, though a linear cooling trend in the abyssal ocean (to compensate the freshening) is not statistically significant.

The April 2009 Gulf of Alaska Line-Transect Survey (Goals) in the Navy Training Exercise Area

DTIC Science & Technology

2009-10-01

acoustic detections and localizations of sperm whales in comparison with previous surveys, there were not enough positive range ... Acoustic effort and detections during GOALS 2009 research cruise (red = killer whale , blue = sperm whale ). 15    Table 4 – Acoustic Detections ... detections of baleen whales . While a loss of this component prevented potential acoustic detections of some rare species like

Seabird, fish, marine mammal, and oceanography coordinated investigations (SMMOCI) in Sitka Sound, Alaska, July 2000

USGS Publications Warehouse

Piatt, John F.; Dragoo, Donald E.

2005-01-01

Surveys for seabirds and marine mammals were conducted in and near Sitka Sound, Alaska (Fig. 1) from the M/V Tiĝlax̂ during 12-16 July 2000 (Table 1, Fig. 1). The objective was to characterize the marine environment in the vicinity of St. Lazaria Island, one of ten seabird colonies monitored annually by the Alaska Maritime National Wildlife Refuge (See Dragoo et al. 2003). In addition to censusing seabirds and mammals encountered on line transects, local oceanography was characterized by measuring water temperature and salinity continuously at the sea surface, and by taking profiles of the water column on a series of CTD transects. The relative abundance of zooplankton and fish biomass was measured using a dual -frequency echosounder. Significant acoustic targets were sampled with a m id-water trawl net. Long-lines were se t twice to catch and characterize diets of large demersal fish species.Rosenthal et al. (1981 and 1982) studied the bottomfish component of the nearshore habitats in southeastern Alaska including the Sitka Sound area during the summers of 1980 and 1981, allowing comparisons of our findings to those from the earlier works. There are no previous surveys for seabirds or marine mammals in this area with which we can compare our surveys.

Richness and cover of nontimber economic plants along altitude in temperate Himalayan forest-use types.

PubMed

Tariq, Akash; Adnan, Muhammad; AbdElsalam, Naser M; Fouad, Hassan; Hussain, Kamran; Ullah, Riaz; Ullah, Ahsan

2014-01-01

Pakistani Himalaya stretches over a wide range of altitudinal gradients and supports high diversity of medicinal plants that are an important source for rural livelihood. Altitudinal effects on ground vegetation have already been indicated but ground vegetation is also under severe threat of grazing and over collection. The present study investigated the effect of altitude on medicinal plants abundance in both old-growth and derived woodland forests. Each of the five line transects was selected in old-growth and derived woodland forests. Each line transect consisted of four plots distributed at four altitudinal levels (2200, 2300, 2400, and 2500 m asl). Species richness under derived woodland had shown strong negative correlation (r = -0.95) with altitude while it was found to be nonsignificant under old-growth. Cover of most of the species such as Veronica laxa (r = -0.95, P ≤ 0.05) had shown significant negative correlation with altitude under derived woodland. Cover abundance of some species like Valeriana jatamansi and Viola canescens has also shown significant negative correlation under old-growth forest. Derived woodland can decrease the cover abundance of valuable medicinal plants towards extension at higher altitudes. Thus, protection of the derived woodland could serve as a tool for the improvement of rural livelihood and ecological restoration.

Richness and Cover of Nontimber Economic Plants along Altitude in Temperate Himalayan Forest-Use Types

PubMed Central

Tariq, Akash; Adnan, Muhammad; AbdElsalam, Naser M.; Fouad, Hassan; Hussain, Kamran; Ullah, Ahsan

2014-01-01

Pakistani Himalaya stretches over a wide range of altitudinal gradients and supports high diversity of medicinal plants that are an important source for rural livelihood. Altitudinal effects on ground vegetation have already been indicated but ground vegetation is also under severe threat of grazing and over collection. The present study investigated the effect of altitude on medicinal plants abundance in both old-growth and derived woodland forests. Each of the five line transects was selected in old-growth and derived woodland forests. Each line transect consisted of four plots distributed at four altitudinal levels (2200, 2300, 2400, and 2500 m asl). Species richness under derived woodland had shown strong negative correlation (r = −0.95) with altitude while it was found to be nonsignificant under old-growth. Cover of most of the species such as Veronica laxa (r = −0.95, P ≤ 0.05) had shown significant negative correlation with altitude under derived woodland. Cover abundance of some species like Valeriana jatamansi and Viola canescens has also shown significant negative correlation under old-growth forest. Derived woodland can decrease the cover abundance of valuable medicinal plants towards extension at higher altitudes. Thus, protection of the derived woodland could serve as a tool for the improvement of rural livelihood and ecological restoration. PMID:25032237

The effects of nicotine exposure and PFC transection on the time-frequency distribution of VTA DA neurons' firing activities.

PubMed

Chen, Ting Y; Zhang, Die; Dragomir, Andrei; Akay, Yasemin; Akay, Metin

2011-05-01

We investigated the influence of nicotine exposure and prefrontal cortex (PFC) transections on ventral tegmental areas (VTA) dopamine (DA) neurons' firing activities using a time-frequency method based on the continuous wavelet transform (CWT). Extracellular single-unit neural activity was recorded from DA neurons in the VTA area of rats. One group had their PFC inputs to the VTA intact, while the other group had the inputs to VTA bilaterally transected immediate caudal to the PFC. We hypothesized that the systemic nicotine exposure will significantly change the energy distribution in the recorded neural activity. Additionally, we investigated whether the loss of inputs to the VTA caused by the PFC transection resulted in the cancellation of the nicotine' effect on the neurons' firing patterns. The time-frequency representations of VTA DA neurons firing activity were estimated from the reconstructed firing rate histogram. The energy contents were estimated from three frequency bands, which are known to encompass the significant modes of operation of DA neurons. Our results show that systemic nicotine exposure disrupts the energy distribution in PFC-intact rats. Particularly, there is a significant increase in energy contents of the 1-1.5 Hz frequency band. This corresponds to an observed increase in the firing rate of VTA DA neurons following nicotine exposure. Additionally, our results from PFC-transected rats show that there is no change in the energy distribution of the recordings after systemic nicotine exposure. These results indicate that the PFC plays an important role in affecting the activities of VTA DA neurons and that the CWT is a useful method for monitoring the changes in neural activity patterns in both time and frequency domains.

Statistical and Multifractal Evaluation of Soil Compaction in a Vineyard

NASA Astrophysics Data System (ADS)

Marinho, M.; Raposo, J. R.; Mirás Avalos, J. M.; Paz González, A.

2012-04-01

One of the detrimental effects caused by agricultural machines is soil compaction, which can be defined by an increase in soil bulk density. Soil compaction often has a negative impact on plant growth, since it reduces the macroporosity and soil permeability and increases resistance to penetration. Our research explored the effect of the agricultural machinery on soil when trafficking through a vineyard at a small spatial scale, based on the evaluation of the soil compaction status. The objectives of this study were: i) to quantify soil bulk density along transects following wine row, wheel track and outside track, and, ii) to characterize the variability of the bulk density along these transects using multifractal analysis. The field work was conducted at the experimental farm of EVEGA (Viticulture and Enology Centre of Galicia) located in Ponte San Clodio, Leiro, Orense, Spain. Three parallel transects were marked on positions with contrasting machine traffic effects, i.e. vine row, wheel-track and outside-track. Undisturbed samples were collected in 16 points of each transect, spaced 0.50 m apart, for bulk density determination using the cylinder method. Samples were taken in autumn 2011, after grape harvest. Since soil between vine rows was tilled and homogenized beginning spring 2011, cumulative effects of traffic during the vine growth period could be evaluated. The distribution patterns of soil bulk density were characterized by multifractal analysis carried out by the method of moments. Multifractality was assessed by several indexes derived from the mass exponent, τq, the generalized dimension, Dq, and the singularity spectrum, f(α), curves. Mean soil bulk density values determined for vine row, outside-track and wheel-track transects were 1.212 kg dm-3, 1.259 kg dm-3and 1.582 kg dm-3, respectively. The respective coefficients of variation (CV) for these three transects were 7.76%, 4.82% and 2.03%. Therefore mean bulk density under wheel-track was 30.5% higher than along the vine row. Vine row and outside-track positions showed not significant differences between means. The bulk density of the wheel-track transect also showed the lowest CV. The multifractal spectra of the three transects were asymmetric curves, rather short toward the left and much longer toward the right. The width of the right deviating shaped multifractal spectra was ranked as: wine row > outside-track ≈ wheel-track. Entropy dimension, D1, was 0.998, 0.992 and 0.992 for vine row, outside-track and track transects, respectively. These results show different patterns of variability of bulk density for parallel transects. They also suggest that multifractal parameters may be useful in assessing the variability of other soil properties such as soil particle density, soil porosity or soil water content, at different spatial scales as well. Acknowledgments. This work was funded in part by Spanish Ministry of Science and Innovation (MICINN) in the frame of project CGL2009-13700-C02. Financial support from CAPES/GOV., Brazil, is also acknowledged by Prof. M. Marinho.

Electrical field distribution within the injured cat spinal cord: injury potentials and field distribution.

PubMed

Khan, T; Myklebust, J; Swiontek, T; Sayers, S; Dauzvardis, M

1994-12-01

This study investigated the spontaneous injury potentials measured after contusion or transection injury to the cat spinal cord. In addition, the distribution of electrical field potentials on the surface and within the spinal cord were measured following applied electrical fields after transection and contusion injuries. After transection of the spinal cord, the injury potentials were -19.8 +/- 2.6 mV; after contusion of the spinal cord, the injury potentials were -9.5 +/- 2.2 mV. These potentials returned to control values within 2.5-4h after injury. The electrical field distribution measured on the dorsal surface, as well as within the spinal cord, after the application of a 10 microA current, showed little difference between contusion and transection injuries. Scalar potential fields were measured using two configurations of stimulating electrodes: dorsal to dorsal (D-D), in which both electrodes were placed epidurally on the dorsal surface of the spinal cord, and ventral to dorsal (V-D), in which one electrode was placed dorsally and one ventrally. As reported in normal uninjured cats, the total current in the midsagittal plane for the D-D configuration was largely confined to the dorsal portion of the spinal cord; with the V-D configuration, the current distribution was uniform throughout the spinal cord. In the injured spinal cord, the equipotential lines midway between the stimulating electrodes have a wider separation than in the uninjured spinal cord. Because the magnitude of the electrical field E is equal to the current density J multiplied by the resistivity r, this suggests that either the current density is reduced or that the resistivity is reduced.

Comparison of transect sampling and object-oriented image classification methods of urbanizing catchments

NASA Astrophysics Data System (ADS)

Yang, Y.; Tenenbaum, D. E.

2009-12-01

The process of urbanization has major effects on both human and natural systems. In order to monitor these changes and better understand how urban ecological systems work, urban spatial structure and the variation needs to be first quantified at a fine scale. Because the land-use and land-cover (LULC) in urbanizing areas is highly heterogeneous, the classification of urbanizing environments is the most challenging field in remote sensing. Although a pixel-based method is a common way to do classification, the results are not good enough for many research objectives which require more accurate classification data in fine scales. Transect sampling and object-oriented classification methods are more appropriate for urbanizing areas. Tenenbaum used a transect sampling method using a computer-based facility within a widely available commercial GIS in the Glyndon Catchment and the Upper Baismans Run Catchment, Baltimore, Maryland. It was a two-tiered classification system, including a primary level (which includes 7 classes) and a secondary level (which includes 37 categories). The statistical information of LULC was collected. W. Zhou applied an object-oriented method at the parcel level in Gwynn’s Falls Watershed which includes the two previously mentioned catchments and six classes were extracted. The two urbanizing catchments are located in greater Baltimore, Maryland and drain into Chesapeake Bay. In this research, the two different methods are compared for 6 classes (woody, herbaceous, water, ground, pavement and structure). The comparison method uses the segments in the transect method to extract LULC information from the results of the object-oriented method. Classification results were compared in order to evaluate the difference between the two methods. The overall proportions of LULC classes from the two studies show that there is overestimation of structures in the object-oriented method. For the other five classes, the results from the two methods are similar, except for a difference in the proportions of the woody class. The segment to segment comparison shows that the resolution of the light detection and ranging (LIDAR) data used in the object-oriented method does affect the accuracy of the classification. Shadows of trees and structures are still a big problem in the object-oriented method. For classes that make up a small proportion of the catchments, such as water, neither method was capable of detecting them.

Acid Volatile Sulfides (avs) and the Bioavailability of Trace Metals in the Channel of the SÃO Francisco River, Sepetiba Bay - de Janeiro-Brazil

NASA Astrophysics Data System (ADS)

Monte, Christiane; Rodrigues, Ana Paula; Marinho, Matheus; Quaresma, Tássia; Machado, Wilson

2014-05-01

Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro. Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro.The San Francisco channel comes from the Guandu River and empties into Sepetiba Bay and is the main contributor of freshwater to the estuarine system. The Guandu River system/channel of San Francisco receives contribution of domestic and industrial effluents, which go largely to Sepetiba Bay. This work aimed to evaluate the .This work aimed to evaluate the ratio SEM/AVS as a way of predicting bioavailability trace metals from industrial sewage, mainly, in the estuarine system of Sepetiba. This model is based on the property of some Divalent metal cations (Cd, Cu, Ni, Pb and Zn), by presenting a low solubility constant, are removed from the soluble fraction by precipitation, forming secondary metal sulfides. Were held four transects, made up of three points each, the coast line to the center of the Bay. The surface sediment was collected with a van Veen sampler type ,packed in glass jars and kept frozen until analysis.The determination of SEM/AVS followed the methodology described by Allen et al. (1991). The variation between sulfide 159.88 ± 0.05 µmol/g on 12 points. The metals that entered the sum of simultaneous extraction were: Cd, Cu, Ni, Pb and Zn ranging from: 6.47 ± 0.11 µmol/g on sum.The means (± standard deviation) ratio SEM/AVS per transect were: 1.04 ± 1.20 (transect 1); 0.48 ± 0.53 (transect 2); 1.26 ± 1.32 (transect 3) and 0.18 ± 0.14 (transect 4). Only transects 1 and 3 had higher results than 1 , meaning that there are more divalent metal sulfides in the environment. This means that only the sulfides would not be capable of complex and may reflect the potential bioavailability of these in the aquatic environment. There is no statistical difference between the transects. According to the studies done previously in the area for concentrations of AVS MADDOCK et at. (2007) found values greater than 290 μmol g-1, MACHADO et al. (2008) found concentrations between 5.2-121 μmol g-1 in the Herons Cove and RODRIGUES (2013) found concentrations between 14.26 to 41.46 μmol g-1 in the Engenho's Sac.The results may reflect the oxic conditions of the environment, which interferes with the reduction of SO4. Additionally, other mechanisms of metal retention in the sediment may be occurring at the site, together with the interfering sulfide. Key words: estuary sediment and simultaneous extraction of metals.

How can Smartphone-Based Internet Data Support Animal Ecology Fieldtrip?

NASA Astrophysics Data System (ADS)

Kurniawan, I. S.; Tapilow, F. S.; Hidayat, T.

2017-09-01

Identification and classification skills must be owned by the students. In animal ecology course, the identification and classification skills are necessary to study animals. This experimental study aims to describe the identification and classification skills of students on animal ecology field trip to studying various bird species using smartphone-based internet data. Using Involving 63 students divided into 7 groups for each observation station. Data of birds were sampled using line transect method (5000 meters/station). The results showed the identification and classification skills of students are in sufficient categories. Most students have difficulties because of the limitations of data on the internet about birds. In general, students support the use of smartphones in field trip activities. The results of this study can be used as a reference for the development of learning using smartphones in the future by developing application about birds. The outline, smartphones can be used as a method of alternative learning but needs to be developed for some special purposes.

Airborne Lidar and Aerial Imagery to Assess Potential Habitats for the Desert Tortoise (Gopherus agassizii)

NASA Astrophysics Data System (ADS)

Young, Michael; Andrews, John; Caldwell, Todd; Saylam, Kutalmis

2017-04-01

The desert Southwestern United States serves as the host to the habitat for several threatened and endangered species, one of which is the desert tortoise (Gopherus agassizii). The goal in this study was to develop a fine-scale, remote sensing-based model that predicts potential habitat locations of G. agassizii in the Boulder City (Nevada) Conversation Easement area (35,500 hectares). This was done by analyzing airborne Lidar data (5-7 points/m2) and color imagery (4 bands, 0.15 m resolution) and determining percent vegetation cover, shrub height and area, NDVI, and several geomorphic characteristics including slope, azimuth, roughness, etc. Other field data used herein include estimates of canopy area and species richness using 1271 line transects, and shrub height and canopy area using plant-specific measurements of 200 plants. Larrea tridentada and Ambrosia dumosa shrubs were identified using an algorithm that obtained an optimum combination of NDVI and average reflectance of the four bands (IR, R, G, B) from pixels in each image. Results identified more than 65 million shrubs across the study area, and indicate that percent vegetation cover from the aerial imagery across the site (13.92%) compared favorably (14.52%) to the estimate obtained from the line transects, though the lidar method yielded shrub heights approximately 60% of measured shrub heights. Plants and landscape properties were combined with known locations of tortoise burrows (visually observed in 2014), yielding a predictive model of potential tortoise habitats. Masks were created using roughness coefficient, slope percent, azimuth of burrow openings, elevation and percent ground cover to isolate areas more likely to host habitats. Combined together, the masks isolated 55% of the total survey area, which would help target future field surveys. Overall, the vegetation map superimposed onto the background soil data could estimate the location of tortoise burrows.

Evaluating the suitability of planted forests for African forest monkeys: a case study from Kakamega forest, Kenya.

PubMed

Fashing, Peter J; Nguyen, Nga; Luteshi, Patrick; Opondo, Winstone; Cash, Julie F; Cords, Marina

2012-01-01

As natural forest cover declines, planted forests have come to occupy an increasing percentage of the earth's surface, yet we know little about their suitability as alternative habitat for wildlife. Although some primate species use planted forests, few studies have compared primate populations in natural and nearby planted forests. From March 2006 to July 2010, we conducted line transect surveys and assessed group sizes and compositions in natural and nearby 60-70 year old mixed indigenous planted forest to determine the densities of diurnal primate species (Colobus guereza, Cercopithecus mitis, C. ascanius) in these two forest types at Isecheno, Kakamega Forest, Kenya. Line transect data were analyzed using the Encounter Rate, Whitesides, and Distance sampling methods, which all provided broadly consistent results. We found that all three diurnal primate species occupy both natural and planted forest at Isecheno. However, group densities of the two Cercopithecus species were 42-46% lower in planted than in natural forest. Colobus guereza achieved comparable group densities in the two forest types, although the species is found in smaller groups, and thus at lower (35%) individual density, in planted than in natural forest. Following a logging episode in the planted forest mid-way through our study, Cercopithecus ascanius group densities fell by 60% while C. mitis and Colobus guereza group densities remained stable over the next two years. Overall, our results suggest that while primate species vary in their response to habitat disturbance, planted forest has the potential to contribute to the conservation of some African monkey species. Even for the relatively flexible taxa in our study, however, 60-70 year old mixed indigenous planted forest failed to support densities comparable to those in nearby natural forest. From the perspective of Kakamega's primates, planted forests may supplement natural forest, but are not an adequate replacement for it. © 2011 Wiley Periodicals, Inc.

Assessing relative abundance and reproductive success of shrubsteppe raptors

USGS Publications Warehouse

Lehman, Robert N.; Carpenter, L.B.; Steenhof, Karen; Kochert, Michael N.

1998-01-01

From 1991-1994, we quantified relative abundance and reproductive success of the Ferruginous Hawk (Buteo regalis), Northern Harrier (Circus cyaneus), Burrowing Owl (Speotytoc unicularia), and Short-eared Owl (Asio flammeus) on the shrubsteppe plateaus (benchlands) in and near the Snake River Birds of Prey National Conservation Area in southwestern Idaho. To assess relative abundance, we searched randomly selected plots using four sampling methods: point counts, line transects, and quadrats of two sizes. On a persampling-effort basis, transects were slightly more effective than point counts and quadrats for locating raptor nests (3.4 pairs detected/100 h of effort vs. 2.2-3.1 pairs). Random sampling using quadrats failed to detect a Short-eared Owl population increase from 1993 to 1994. To evaluate nesting success, we tried to determine reproductive outcome for all nesting attempts located during random, historical, and incidental nest searches. We compared nesting success estimates based on all nesting attempts, on attempts found during incubation, and the Mayfield model. Most pairs used to evaluate success were pairs found incidentally. Visits to historical nesting areas yielded the highest number of pairs per sampling effort (14.6/100 h), but reoccupancy rates for most species decreased through time. Estimates based on all attempts had the highest sample sizes but probably overestimated success for all species except the Ferruginous Hawk. Estimates of success based on nesting attempts found during incubation had the lowest sample sizes. All three methods yielded biased nesting snccess estimates for the Northern Harrier and Short-eared Owl. The estimate based on pairs found during incubation probably provided the least biased estimate for the Burrowing Owl. Assessments of nesting success were hindered by difficulties in confirming egg laying and nesting success for all species except the Ferruginous hawk.

Statistical Algorithms Accounting for Background Density in the Detection of UXO Target Areas at DoD Munitions Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matzke, Brett D.; Wilson, John E.; Hathaway, J.

2008-02-12

Statistically defensible methods are presented for developing geophysical detector sampling plans and analyzing data for munitions response sites where unexploded ordnance (UXO) may exist. Detection methods for identifying areas of elevated anomaly density from background density are shown. Additionally, methods are described which aid in the choice of transect pattern and spacing to assure with degree of confidence that a target area (TA) of specific size, shape, and anomaly density will be identified using the detection methods. Methods for evaluating the sensitivity of designs to variation in certain parameters are also discussed. Methods presented have been incorporated into the Visualmore » Sample Plan (VSP) software (free at http://dqo.pnl.gov/vsp) and demonstrated at multiple sites in the United States. Application examples from actual transect designs and surveys from the previous two years are demonstrated.« less

Modeling of Habitat and Foraging Behavior of Beaked Whales in the Southern California Bight

DTIC Science & Technology

2015-09-30

619) 261-1651 fax: (760) 652-4878 email: tina.yack@bio-waves.net Jeffrey E. Moore Southwest Fisheries Science Center NOAA Fisheries ...a species label. Data from acoustic line-transect surveys (2008-2011) carried out by NOAA Southwest Fisheries Science Center (Jay Barlow) in...stationary HARP sites. For this purpose we took advantage of the Effects of Sound on Marine Environment (ESME) 2012 Workbench framework (D. Mountain

Initial Results from the 2002 Gulf of California Conjugate Margin Seismic Experiment

NASA Astrophysics Data System (ADS)

Holbrook, S.; Lizarralde, D.; Kent, G.; Harding, A.; Fletcher, J.; Gonzalez-Fernandez, A.; Umhoefer, P.; Axen, G.

2003-04-01

The Gulf of California, which marks the ongoing separation of Baja California from mainland Mexico, is one of the few locales where active continental breakup can be studied along unambiguous flow lines that join clear conjugate margin pairs. In Fall 2002, we conducted an onshore-offshore seismic experiment across the conjugate rifted margins of the Gulf of California in several rift segments. The joint U.S.-Mexico project, sponsored principally by the MARGINS program of the U.S. National Science Foundation, aimed to image crustal structure across conjugate margins of four major basins to determine the modes of extension and the influence of sedimentation and magmatism on breakup. Here we present an overview of the experiment, which was substantially altered at sea due to concerns for marine-mammal safety, and present some preliminary findings. Three flow-line transects were acquired, in the Alarcon Basin, the Guaymas Basin, and between Cabo and Tres Marias Islands. In addition, a fourth transect across the Baja Peninsula was acquired. Data acquired included (1) multichannel seismic reflection data using the R/V Ewing’s 20-gun array and 480-channel, 6-km-long streamer, (2) wide-angle reflection/refraction data recorded on ocean-bottom seismometers, from 206 deployments conducted by the R/V New Horizon, and (3) onshore-offshore data recorded on portable seismometers deployed up to 100 km inland on all transects. Initial results from the experiment include (1) clear evidence for asymmetric basement structure on the conjugate rifted margins and across the active mid-ocean spreading center, of the Guaymas Basin, (2) the suggestion of substantial magmatism in an early failed rift of the Alarcon Basin, and (3) active subduction beneath the margin at the Tres Marias islands. In addition, we will discuss new procedures for mitigating effects on marine mammals that may have a significant impact on future U.S.-sponsored seismic reflection activities.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee Kerkhof

The focus of our research was to provide a comprehensive study of the bacterioplankton populations off the coast of New Jersey near the Rutgers University marine field station using terminal restriction fragment polymorphism analysis (TRFLP) coupled to 16S rRNA genes for large data set studies. Our three revised objectives to this study became: (1) to describe bacterioplankton population dynamics in the Mid Atlantic Bight using TRFLP analysis of 16S rRNA genes. (2) to determine whether spatial and temporal factors are driving bacterioplankton community dynamics in the MAB using monthly samping along our transect line over a 2-year period. (3) tomore » identify dominant members of a coastal bacterioplankton population by clonal library analysis of 16S rDNA genes and sequencing of PCR product corresponding to specific TRFLP peaks in the data set. Although open ocean time-series sites have been areas of microbial research for years, relatively little was known about the population dynamics of bacterioplankton communities in the coastal ocean on kilometer spatial and seasonal temporal scales. To gain a better understanding of microbial community variability, monthly samples of bacterial biomass were collected in 1995-1996 along a 34-km transect near the Long-Term Ecosystem Observatory (LEO-15) off the New Jersey coast. Surface and bottom sampling was performed at seven stations along a transect line with depths ranging from 1 to 35m (n=178). The data revealed distinct temporal patterns among the bacterioplankton communities in the Mid-Atlantic Bight rather than grouping by sample location or depth (figure 2-next page). Principal components analysis models supported the temporal patterns. In addition, partial least squares regression modeling could not discern a significant correlation from traditional oceanographic physical and phytoplankton nutrient parameters on overall bacterial community variability patterns at LEO-15. These results suggest factors not traditionally measured during oceanographic studies are structuring coastal microbial communities.« less

Selectivity in the Reinnervation of the Lateral Gastrocnemius Muscle after Nerve Repair with Ethyl Cyanoacrylate in the Rat

PubMed Central

Landegren, Thomas; Risling, Mårten; Hammarberg, Henrik; Persson, Jonas K. E.

2011-01-01

There is a need for complementary surgical techniques that enable rapid and reliable primary repair of transected nerves. Previous studies after peripheral nerve transection and repair with synthetic adhesives have demonstrated regeneration to an extent comparable to that of conventional techniques. The aim of this study was to compare two different repair techniques on the selectivity of muscle reinnervation after repair and completed regeneration. We used the cholera toxin B technique of retrograde axonal tracing to evaluate the morphology, the number, and the three-dimensional location of α-motoneurons innervating the lateral gastrocnemius muscle and compared the results after repair with either ethyl cyanoacrylate (ECA) or epineural sutures of the transected parent sciatic nerve. In addition, we recorded the wet weight of the muscle. Six months after transection and repair of the sciatic nerve, the redistribution of the motoneuron pool was markedly disorganized, the motoneurons had apparently increased in number, and they were scattered throughout a larger volume of the spinal cord gray matter with a decrease in the synaptic coverage compared to controls. A reduction in muscle weight was observed as well. No difference in morphometric variables or muscle weight between the two repair methods could be detected. We conclude that the selectivity of motor reinnervation following sciatic nerve transection and subsequent repair with ECA is comparable to that following conventional micro suturing. PMID:21577248

Comparison of Relative Bias, Precision, and Efficiency of Sampling Methods for Natural Enemies of Soybean Aphid (Hemiptera: Aphididae).

PubMed

Bannerman, J A; Costamagna, A C; McCornack, B P; Ragsdale, D W

2015-06-01

Generalist natural enemies play an important role in controlling soybean aphid, Aphis glycines (Hemiptera: Aphididae), in North America. Several sampling methods are used to monitor natural enemy populations in soybean, but there has been little work investigating their relative bias, precision, and efficiency. We compare five sampling methods: quadrats, whole-plant counts, sweep-netting, walking transects, and yellow sticky cards to determine the most practical methods for sampling the three most prominent species, which included Harmonia axyridis (Pallas), Coccinella septempunctata L. (Coleoptera: Coccinellidae), and Orius insidiosus (Say) (Hemiptera: Anthocoridae). We show an important time by sampling method interaction indicated by diverging community similarities within and between sampling methods as the growing season progressed. Similarly, correlations between sampling methods for the three most abundant species over multiple time periods indicated differences in relative bias between sampling methods and suggests that bias is not consistent throughout the growing season, particularly for sticky cards and whole-plant samples. Furthermore, we show that sticky cards produce strongly biased capture rates relative to the other four sampling methods. Precision and efficiency differed between sampling methods and sticky cards produced the most precise (but highly biased) results for adult natural enemies, while walking transects and whole-plant counts were the most efficient methods for detecting coccinellids and O. insidiosus, respectively. Based on bias, precision, and efficiency considerations, the most practical sampling methods for monitoring in soybean include walking transects for coccinellid detection and whole-plant counts for detection of small predators like O. insidiosus. Sweep-netting and quadrat samples are also useful for some applications, when efficiency is not paramount. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Simulation of Anterior Cruciate Ligament Deficiency in a Musculoskeletal Model with Anatomical Knees

PubMed Central

Guess, Trent M; Stylianou, Antonis

2012-01-01

Abnormal knee kinematics and meniscus injury resulting from anterior cruciate ligament (ACL) deficiency are often implicated in joint degeneration even though changes in tibio-femoral contact location after injury are small, typically only a few millimeters. Ligament reconstruction surgery does not significantly reduce the incidence of early onset osteoarthritis. Increased knowledge of knee contact mechanics would increase our understanding of the effects of ACL injury and help guide ACL reconstruction methods. Presented here is a cadaver specific computational knee model combined with a body-level musculoskeletal model from a subject of similar height and weight as the cadaver donor. The knee model was developed in the multi-body framework and includes representation of the menisci. Experimental body-level measurements provided input to the musculoskeletal model. The location of tibio-menisco-femoral contact as well as contact pressures were compared for models with an intact ACL, partial ACL transection (posterolateral bundle transection), and full ACL transection during a muscle driven forward dynamics simulation of a dual limb squat. During the squat, small changes in femur motion relative to the tibia for both partial and full ACL transection push the lateral meniscus in the posterior direction at extension. The central-anterior region of the lateral meniscus then becomes “wedged” between the tibia and femur during knee flexion. This “wedging” effect does not occur for the intact knee. Peak contact pressure and contact locations are similar for the partial tear and complete ACL transection during the deep flexion portion of the squat, particularly on the lateral side. The tibio-femoral contact location on the tibia plateau shifts slightly to the posterior and lateral direction with ACL transection. PMID:22470411

Scar modulation in subacute and chronic CNS lesions: Effects on axonal regeneration.

PubMed

Stichel, Christine C.; Lausberg, Friederike; Hermanns, Susanne; Müller, Hans Werner

1999-01-01

After injury of the adult mammalian CNS axonal regeneration across or around the lesion scar is negligible. Previously, we have shown that the lesion-induced basal membrane (BM) within the lesion center participates in a growth barrier for axon regeneration and that its reduction by means of pharmacological or immunochemical treatment is a prerequisite and sufficient condition for regrowing axons to cross the lesion site. The present study was designed to further investigate this observation by analyzing the effect of a delayed treatment on the regeneration of both subacutely and chronically lesioned axons.Adult rats underwent unilateral transection of the postcommissural fornix. At one to five days after transection one group of animals received a local injection of 2, 2'-dipyridyl (DPY), an inhibitor of collagen triple helix formation and synthesis. Another group received a second transection within the former lesion site followed by an immediate DPY-injection at five days or 4 weeks after transection. Six weeks after the last surgery BM deposition and axonal regeneration were analysed using immunocytochemical methods.A local injection of DPY clearly reduced the lesion-induced BM deposition when applied within the first 3 days after transection. Under these conditions regrowing axons still crossed the former impermeable lesion site and regenerated within their normal pathway up to their former target, the mammillary body. However, in late subacute (5 d) and chronic stages (4 w) the double transection+injection paradigm failed to reduce BM deposition and, in consequence, also to induce axonal regeneration.These results demonstrate the potential of the collagen IV-reducing strategy to promote axonal regeneration across the lesion scar not only in acute but also in early subacute traumatic injuries.

Transection Speed and Impact on Perioperative Inflammatory Response – A Randomized Controlled Trial Comparing Stapler Hepatectomy and CUSA Resection

PubMed Central

Schwarz, Christoph; Klaus, Daniel A.; Tudor, Bianca; Fleischmann, Edith; Wekerle, Thomas; Roth, Georg; Bodingbauer, Martin; Kaczirek, Klaus

2015-01-01

Background Parenchymal transection represents a crucial step during liver surgery and many different techniques have been described so far. Stapler resection is supposed to be faster than CUSA resection. However, whether speed impacts on the inflammatory response in patients undergoing liver resection (LR) remains unclear. Materials and Methods This is a randomized controlled trial including 40 patients undergoing anatomical LR. Primary endpoint was transection speed (cm2/min). Secondary endpoints included the perioperative change of pro- and anti-inflammatory cytokines, overall surgery duration, length of hospital stay, morbidity and mortality. Results Mean transection speed was significantly higher in patients undergoing stapler hepatectomy compared to CUSA resection (CUSA: 1 (0.4) cm2/min vs. Stapler: 10.8 (6.1) cm2/min; p<0.0001). Analyzing the impact of surgery duration on inflammatory response revealed a significant correlation between IL-6 levels measured at the end of surgery and the overall length of surgery (p<0.0001, r = 0.6188). Patients undergoing CUSA LR had significantly higher increase of interleukin-6 (IL-6) after parenchymal transection compared to patients with stapler hepatectomy in the portal and hepatic veins, respectively (p = 0.028; p = 0.044). C-reactive protein levels on the first post-operative day were significantly lower in the stapler cohort (p = 0.010). There was a trend towards a reduced overall surgery time in patients with stapler LR, especially in the subgroup of patients undergoing minor hepatectomies (p = 0.020). Conclusions Liver resection using staplers is fast, safe and suggests a diminished inflammatory response probably due to a decreased parenchymal transection time. Trial Registration ClinicalTrials.gov NCT01785212 PMID:26452162

Endovascular repair of thoracic aortic traumatic transections is a safe method in patients with complicated injuries.

PubMed

Rahimi, Saum A; Darling, R Clement; Mehta, Manish; Roddy, Sean P; Taggert, John B; Sternbach, Yaron

2010-10-01

Historically thoracic aortic rupture secondary to trauma was treated with cardiopulmonary bypass and open surgery. With the advent of endovascular grafting, physicians have the ability to reconstruct the thoracic aortic transection using a less invasive technique. In this study, we examine our experience with stent graft repair of thoracic transections secondary to trauma. The medical records of patients treated at a level I trauma center from 2005 to 2008 were reviewed. Those patients who had an aortic transection treated with an endograft were identified and evaluated for in-hospital mortality and morbidity and concurrent injuries. Demographics, procedural details, and outcomes were analyzed. Over a 3-year period, 18 thoracic aortic transections secondary to trauma were identified in patients with a mean age of 43 (range, 16-80). Primary technical success was 100%. None of the patients required explant or open repair during this time period. In-hospital mortality was 2 of 18 (11%); all patients had multiple trauma including long bone fractures. The subclavian artery origin was covered by the stent graft in 9 of the 18 patients. The mean estimated blood loss per procedure was 222 cc. No patient in this series had postoperative paraplegia. Follow-up ranged from 1 to 50 months with an average of 13 months. There have been no late explantation or device failures identified. Endovascular repair of traumatic thoracic aortic transections can be performed safely with a relatively low mortality and morbidity and should be the procedure of choice for patients presenting with traumatic thoracic aortic ruptures. Copyright © 2010 Society for Vascular Surgery. Published by Mosby, Inc. All rights reserved.

Hyperexcitability of bladder afferent neurons associated with reduction of Kv1.4 α-subunit in rats with spinal cord injury.

PubMed

Takahashi, Ryosuke; Yoshizawa, Tsuyoshi; Yunoki, Takakazu; Tyagi, Pradeep; Naito, Seiji; de Groat, William C; Yoshimura, Naoki

2013-12-01

To clarify the functional and molecular mechanisms inducing hyperexcitability of C-fiber bladder afferent pathways after spinal cord injury we examined changes in the electrophysiological properties of bladder afferent neurons, focusing especially on voltage-gated K channels. Freshly dissociated L6-S1 dorsal root ganglion neurons were prepared from female spinal intact and spinal transected (T9-T10 transection) Sprague Dawley® rats. Whole cell patch clamp recordings were performed on individual bladder afferent neurons. Kv1.2 and Kv1.4 α-subunit expression levels were also evaluated by immunohistochemical and real-time polymerase chain reaction methods. Capsaicin sensitive bladder afferent neurons from spinal transected rats showed increased cell excitability, as evidenced by lower spike activation thresholds and a tonic firing pattern. The peak density of transient A-type K+ currents in capsaicin sensitive bladder afferent neurons from spinal transected rats was significantly less than that from spinal intact rats. Also, the KA current inactivation curve was displaced to more hyperpolarized levels after spinal transection. The protein and mRNA expression of Kv1.4 α-subunits, which can form transient A-type K+ channels, was decreased in bladder afferent neurons after spinal transection. Results indicate that the excitability of capsaicin sensitive C-fiber bladder afferent neurons is increased in association with reductions in transient A-type K+ current density and Kv1.4 α-subunit expression in injured rats. Thus, the Kv1.4 α-subunit could be a molecular target for treating overactive bladder due to neurogenic detrusor overactivity. Copyright © 2013 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Pitanguy's otoplasty: report of 551 operations.

PubMed

Werdin, Frank; Wolters, Marianne; Lampe, Hermann

2007-01-01

Protruding ears is a common condition and in plastic surgery there are many techniques for correcting them such as suture, transection, and scoring. Over a period of 15 years, we have used Pitanguy's otoplasty. The advantages of the Pitanguy technique have been verified in a retrospective study of 278 patients followed up for up to 15 years. There were 20 relapses (4%), which is clearly lower than the mean (between 8% and 11%) for patients treated by other methods. The main reason for our low rate resulted from the generation of large scarring areas, using a combination of transection and seaming. We think that a slightly modified Pitanguy's method reduces postoperative morbidity which affects the aesthetic results.

Comparison of blood chemistry values for samples collected from juvenile chinook salmon by three methods

USGS Publications Warehouse

Congleton, J.L.; LaVoie, W.J.

2001-01-01

Thirteen blood chemistry indices were compared for samples collected by three commonly used methods: caudal transection, heart puncture, and caudal vessel puncture. Apparent biases in blood chemistry values for samples obtained by caudal transection were consistent with dilution with tissue fluids: alanine aminotransferase (ALT), aspartate aminotransferase (AST), lactate dehydrogenase (LDH), creatine kinase (CK), triglyceride, and K+ were increased and Na+ and Cl- were decreased relative to values for samples obtained by caudal vessel puncture. Some enzyme activities (ALT, AST, LDH) and K+ concentrations were also greater in samples taken by heart puncture than in samples taken by caudal vessel puncture. Of the methods tested, caudal vessel puncture had the least effect on blood chemistry values and should be preferred for blood chemistry studies on juvenile salmonids.

Comparing Methods of Assessing Dog Rabies Vaccination Coverage in Rural and Urban Communities in Tanzania

PubMed Central

Sambo, Maganga; Johnson, Paul C. D.; Hotopp, Karen; Changalucha, Joel; Cleaveland, Sarah; Kazwala, Rudovick; Lembo, Tiziana; Lugelo, Ahmed; Lushasi, Kennedy; Maziku, Mathew; Mbunda, Eberhard; Mtema, Zacharia; Sikana, Lwitiko; Townsend, Sunny E.; Hampson, Katie

2017-01-01

Rabies can be eliminated by achieving comprehensive coverage of 70% of domestic dogs during annual mass vaccination campaigns. Estimates of vaccination coverage are, therefore, required to evaluate and manage mass dog vaccination programs; however, there is no specific guidance for the most accurate and efficient methods for estimating coverage in different settings. Here, we compare post-vaccination transects, school-based surveys, and household surveys across 28 districts in southeast Tanzania and Pemba island covering rural, urban, coastal and inland settings, and a range of different livelihoods and religious backgrounds. These approaches were explored in detail in a single district in northwest Tanzania (Serengeti), where their performance was compared with a complete dog population census that also recorded dog vaccination status. Post-vaccination transects involved counting marked (vaccinated) and unmarked (unvaccinated) dogs immediately after campaigns in 2,155 villages (24,721 dogs counted). School-based surveys were administered to 8,587 primary school pupils each representing a unique household, in 119 randomly selected schools approximately 2 months after campaigns. Household surveys were conducted in 160 randomly selected villages (4,488 households) in July/August 2011. Costs to implement these coverage assessments were $12.01, $66.12, and $155.70 per village for post-vaccination transects, school-based, and household surveys, respectively. Simulations were performed to assess the effect of sampling on the precision of coverage estimation. The sampling effort required to obtain reasonably precise estimates of coverage from household surveys is generally very high and probably prohibitively expensive for routine monitoring across large areas, particularly in communities with high human to dog ratios. School-based surveys partially overcame sampling constraints, however, were also costly to obtain reasonably precise estimates of coverage. Post-vaccination transects provided precise and timely estimates of community-level coverage that could be used to troubleshoot the performance of campaigns across large areas. However, transects typically overestimated coverage by around 10%, which therefore needs consideration when evaluating the impacts of campaigns. We discuss the advantages and disadvantages of these different methods and make recommendations for how vaccination campaigns can be better monitored and managed at different stages of rabies control and elimination programs. PMID:28352630

A double-observer method for reducing bias in faecal pellet surveys of forest ungulates

USGS Publications Warehouse

Jenkins, K.J.; Manly, B.F.J.

2008-01-01

1. Faecal surveys are used widely to study variations in abundance and distribution of forest-dwelling mammals when direct enumeration is not feasible. The utility of faecal indices of abundance is limited, however, by observational bias and variation in faecal disappearance rates that obscure their relationship to population size. We developed methods to reduce variability in faecal surveys and improve reliability of faecal indices. 2. We used double-observer transect sampling to estimate observational bias of faecal surveys of Roosevelt elk Cervus elaphus roosevelti and Columbian black-tailed deer Odocoileus hemionus columbianus in Olympic National Park, Washington, USA. We also modelled differences in counts of faecal groups obtained from paired cleared and uncleared transect segments as a means to adjust standing crop faecal counts for a standard accumulation interval and to reduce bias resulting from variable decay rates. 3. Estimated detection probabilities of faecal groups ranged from < 0.2-1.0 depending upon the observer, whether the faecal group was from elk or deer, faecal group size, distance of the faecal group from the sampling transect, ground vegetation cover, and the interaction between faecal group size and distance from the transect. 4. Models of plot-clearing effects indicated that standing crop counts of deer faecal groups required 34% reduction on flat terrain and 53% reduction on sloping terrain to represent faeces accumulated over a standard 100-day interval, whereas counts of elk faecal groups required 0% and 46% reductions on flat and sloping terrain, respectively. 5. Synthesis and applications. Double-observer transect sampling provides a cost-effective means of reducing observational bias and variation in faecal decay rates that obscure the interpretation of faecal indices of large mammal abundance. Given the variation we observed in observational bias of faecal surveys and persistence of faeces, we emphasize the need for future researchers to account for these comparatively manageable sources of bias before comparing faecal indices spatially or temporally. Double-observer sampling methods are readily adaptable to study variations in faecal indices of large mammals at the scale of the large forest reserve, natural area, or other forested regions when direct estimation of populations is problematic. ?? 2008 The Authors.

Ecohydrological optimality in the Northeast China Transect

NASA Astrophysics Data System (ADS)

Cong, Zhentao; Li, Qinshu; Mo, Kangle; Zhang, Lexin; Shen, Hong

2017-05-01

The Northeast China Transect (NECT) is one of the International Geosphere-Biosphere Program (IGBP) terrestrial transects, where there is a significant precipitation gradient from east to west, as well as a vegetation transition of forest-grassland-desert. It is remarkable to understand vegetation distribution and dynamics under climate change in this transect. We take canopy cover (M), derived from Normalized Difference Vegetation Index (NDVI), as an index to describe the properties of vegetation distribution and dynamics in the NECT. In Eagleson's ecohydrological optimality theory, the optimal canopy cover (M*) is determined by the trade-off between water supply depending on water balance and water demand depending on canopy transpiration. We apply Eagleson's ecohydrological optimality method in the NECT based on data from 2000 to 2013 to get M*, which is compared with M from NDVI to further discuss the sensitivity of M* to vegetation properties and climate factors. The result indicates that the average M* fits the actual M well (for forest, M* = 0.822 while M = 0.826; for grassland, M* = 0.353 while M = 0.352; the correlation coefficient between M and M* is 0.81). Results of water balance also match the field-measured data in the references. The sensitivity analyses show that M* decreases with the increase of leaf area index (LAI), stem fraction and temperature, while it increases with the increase of leaf angle and precipitation amount. Eagleson's ecohydrological optimality method offers a quantitative way to understand the impacts of climate change on canopy cover and provides guidelines for ecorestoration projects.

Primary non-transecting bulbar urethroplasty long-term success rates are similar to transecting urethroplasty.

PubMed

Anderson, Kirk M; Blakely, Stephen A; O'Donnell, Colin I; Nikolavsky, Dmitriy; Flynn, Brian J

2017-01-01

To review the long-term outcomes of transecting versus non-transecting urethroplasty to repair bulbar urethral strictures. A retrospective review was conducted of 342 patients who underwent anterior urethroplasty performed by a single surgeon from 2003 to 2014. Patients were excluded from further analysis if there had been prior urethroplasty, stricture location outside the bulbous urethra, or age <18 years. In the transecting group, surgical techniques used included excision and primary anastomosis and augmented anastomotic urethroplasty. In the non-transecting group, surgical techniques used included non-transecting anastomotic urethroplasty and dorsal and/or ventral buccal grafting. The primary endpoint was stricture resolution in transecting vs. non-transecting bulbar urethroplasty. Success was defined as freedom from secondary procedures including dilation, urethrotomy, or repeat urethroplasty. One hundred and fifty-two patients met inclusion criteria. At a mean follow-up of 65 months (range: 10-138 months), stricture-free recurrence in the transecting and non-transecting groups was similar, 83% (n = 85/102) and 82% (n = 41/50), respectively (p = 0.84). Surgical technique (p = 0.91), stricture length (p = 0.8), and etiology (p = 0.6) did not affect stricture recurrence rate on multivariate analysis. There was no difference detected in time to stricture recurrence (p = 0.21). In this retrospective series, transecting and non-transecting primary bulbar urethroplasty resulted in similar long-term stricture resolution rate. Prospective studies are needed to determine what differences may present in outcomes related to sexual function and long-term success.

Spatial and size-frequency distribution of Acropora (Cnidaria: Scleractinia) species in Chinchorro Bank, Mexican Caribbean: implications for management

NASA Astrophysics Data System (ADS)

Vega-Zepeda, A.; Hernández-Arana, H.; Carricart-Ganivet, J. P.

2007-09-01

The Mexican Government decreed Chinchorro Bank reef as a Biosphere Reserve in 1996. The aim of this study was to evaluate the spatial and size-frequency distribution of Acropora spp. in order to provide further knowledge and tools to enhance management. A field survey was conducted, within six regions, to locate and measure Acropora patches in the reef lagoon. Density, colony size and living tissue cover of Acropora colonies were evaluated using the line-intercept transect technique, combining direct observations and video transects. The results showed that Acropora spp. was preferentially distributed in the southern regions; where cover and density were high. Based on these results and considering that Acropora spp. produces landscape heterogeneity, which in turn generates shelter for other species, including some of considerable economic importance, then at least the South East region should be considered as a key area for Acropora species conservation, and should be included in the Chinchorro Bank management plan.

Plastic pollution in the South Pacific subtropical gyre.

PubMed

Eriksen, Marcus; Maximenko, Nikolai; Thiel, Martin; Cummins, Anna; Lattin, Gwen; Wilson, Stiv; Hafner, Jan; Zellers, Ann; Rifman, Samuel

2013-03-15

Plastic marine pollution in the open ocean of the southern hemisphere is largely undocumented. Here, we report the result of a (4489 km) 2424 nautical mile transect through the South Pacific subtropical gyre, carried out in March-April 2011. Neuston samples were collected at 48 sites, averaging 50 nautical miles apart, using a manta trawl lined with a 333 μm mesh. The transect bisected a predicted accumulation zone associated with the convergence of surface currents, driven by local winds. The results show an increase in surface abundance of plastic pollution as we neared the center and decrease as we moved away, verifying the presence of a garbage patch. The average abundance and mass was 26,898 particles km(-2) and 70.96 g km(-2), respectively. 88.8% of the plastic pollution was found in the middle third of the samples with the highest value of 396,342 particles km(-2) occurring near the center of the predicted accumulation zone. Copyright © 2013 Elsevier Ltd. All rights reserved.

Environmental parameters of the Tennessee River in Alabama. 1: Thermal stratification

NASA Technical Reports Server (NTRS)

Rosing, L. M.

1976-01-01

Thermal stratification data of a transect across Wheeler Reservoir are correlated with the climatological data at the time of sampling. This portion of the Tennessee River is used as a heat sink for the effluent from the three reactor Browns Ferry Nuclear Power Plant. The transect sampling line is 1.3 miles below this point of effluence. Data are presented by weekly samplings for one year prior to plant operations. Post-operational data are presented with one reactor in operation and with two reactors in partial operation. Data gathering was terminated when the plant ceased operations. The results indicate that the effluent for partial plant operation were inconclusive. As a result, recommendations include continuing the sampling when the plant resumes operation at full capacity. Recommendations also include developing math models with the presented thermal and climatological data to be used for predicting the effluent impact in the river with varying climatological conditions and also to predict the effectiveness of the cooling towers.

[Tachistoscope and dichotic listening test of the subject after the transection of the posterior part of the corpus callosum].

PubMed

Watanabe, S; Tasaki, H; Hojo, K; Yoshimura, I; Sato, T; Nakaoka, T; Iwabuchi, T

1982-06-01

The authors made neuropsychological studies by the tachistoscope and the dichotic listening test on a subject who had undergone the transection of the posterior part of the corpus callosum. As to the tachistoscopic recognition, stimulus material was composed with the various Japanese letters (Katakana, Hiragana, Kanji), various faces (variations of the eyebrow form and the mouth form) and various slopes of line. Table 1 shows results of the cases (the subject was the present case, subjects 1 and subject 2 were past cases). It was seen that the performance of the subject on Japanese letters tasks showed greater right visual field superiority than the one of subject 1 and subject 2. As to the auditory recognition, the tasks used for the dichotic listening test were the following (Table 2, 3, 4). Different digits (three pairs) of the subject showed greater right ear superiority (right ear: 61.1, left ear 5.9) than the ones of subject 1 and subject 2.

Optimum nonparametric estimation of population density based on ordered distances

USGS Publications Warehouse

Patil, S.A.; Kovner, J.L.; Burnham, Kenneth P.

1982-01-01

The asymptotic mean and error mean square are determined for the nonparametric estimator of plant density by distance sampling proposed by Patil, Burnham and Kovner (1979, Biometrics 35, 597-604. On the basis of these formulae, a bias-reduced version of this estimator is given, and its specific form is determined which gives minimum mean square error under varying assumptions about the true probability density function of the sampled data. Extension is given to line-transect sampling.

Cruise Report for the April 2009 Gulf of Alaska Line- Transect Survey (GOALS) in the Navy Training Exercise Area

DTIC Science & Technology

2009-06-01

Whidbey Island on 26 March; however, due to the eruption of the Redoubt volcano , the flight was suspended. The second flight was scheduled to fly in on...GOALS 2009 research cruise (green = fin whales, red = gray whales, orange = humpback whales, yellow = minke whales; open circles = on-effort...otter sightings during GOALS 2009 research cruise (black = Steller sea lion, green = sea otter, yellow = harbor seal, red = unidentified pinniped

Depleted uranium mobility across a weapons testing site: isotopic investigation of porewater, earthworms, and soils.

PubMed

Oliver, Ian W; Graham, Margaret C; MacKenzie, Angus B; Ellam, Robert M; Farmer, John G

2008-12-15

The mobility and bioavailability of depleted uranium (DU) in soils at a UK Ministry of Defence (UK MoD) weapons testing range were investigated. Soil and vegetation were collected near a test-firing position and at eight points along a transect line extending approximately 200 m down-slope, perpendicular to the firing line, toward a small stream. Earthworms and porewaters were subsequently separated from the soils and both total filtered porewater (<0.2 microm) and discrete size fractions (0.2 microm-100 kDa, 100-30 kDa, 30-3 kDa, and <3 kDa)obtainedvia centrifugal ultrafiltration were examined. Uranium concentrations were determined by inductively coupled plasma optical emission spectrometry (ICP-OES) for soils and ICP-mass spectrometry (MS) for earthworms and porewaters, while 235U:238U atom ratios were determined by multicollector (MC)-ICP-MS. Comparison of the porewater and earthworm isotopic values with those of the soil solids indicated that DU released into the environment during weapons test-firing operations was more labile and more bioavailable than naturally occurring U in the soils at the testing range. Importantly, DU was shown to be present in soil porewater even at a distance of approximately 185 m from the test-firing position and, along the extent of the transect was apparently associated with organic colloids.

Spatial and temporal variability in coccolithophore abundance and production of PIC and POC in the NE subarctic Pacific during El Niño (1998), La Niña (1999) and 2000

NASA Astrophysics Data System (ADS)

Lipsen, M. S.; Crawford, D. W.; Gower, J.; Harrison, P. J.

2007-10-01

Seasonal variations in coccolithophore abundance, chlorophyll, nutrients and production of particulate organic and inorganic carbon (POC and PIC) were determined along a coastal to oceanic east-west transect (Line P) culminating at Ocean Station Papa in the northeastern subarctic Pacific between 1998 and 2000. Offshore stations generally exhibited low seasonality in chlorophyll concentrations, with moderate seasonality in POC production. Near shelf stations showed a similar pattern to offshore stations, but were also characterized by sporadic events of higher POC productivity. During the 1998 El Niño, June was characterized by low chlorophyll and POC productivity along the transect, presumably as a result of depleted surface nitrate. In contrast, during the 1999 La Niña, and in 2000, higher POC productivity and surface nitrate occurred along the transect in June. Chlorophyll and POC productivity were similar in late summer in all 3 years. The coccolithophore population was usually numerically dominated by Emiliania huxleyi, particularly in June. Along the transect, abundance of coccolithophores was much higher in June during the 1998 El Niño (mean of 221 cells ml -1) than in the 1999 La Niña (mean of 40 cells ml -1), with their abundance in late summers of both years being very low. Abundances were even higher along the transect in June and the late summer of 2000 with sporadic ‘blooms’ of >1000 cells ml -1 at some stations (cruise averages 395 and 552 cell ml -1, respectively). Production rates of PIC did not consistently correlate with areas of high coccolithophore abundance. PIC production was high (100-250 mg C m -2 d -1) along the transect during June 1998, and low (1-40 mg C m -2 d -1) during both winters, June 1999 and during late summers of 1998 and 1999. The year 2000 was more complicated, with high rates of PIC production accompanying high abundance of coccolithophores in late summer, but lower rates of PIC production accompanying high coccolithophore numbers in June. Our data suggest that the abundance of coccolithophores and the production rates of PIC in the subarctic are higher than previously thought. Occasional PIC:POC production ratios of 1 or greater in 1998 and 2000 suggest that coccolithophores in this region could have a significant impact on the efficiency of the biological carbon pump.

Clamp-Crushing versus stapler hepatectomy for transection of the parenchyma in elective hepatic resection (CRUNSH) - A randomized controlled trial (NCT01049607)

PubMed Central

2011-01-01

Background Hepatic resection is still associated with significant morbidity. Although the period of parenchymal transection presents a crucial step during the operation, uncertainty persists regarding the optimal technique of transection. It was the aim of the present randomized controlled trial to evaluate the efficacy and safety of hepatic resection using the technique of stapler hepatectomy compared to the simple clamp-crushing technique. Methods/Design The CRUNSH Trial is a prospective randomized controlled single-center trial with a two-group parallel design. Patients scheduled for elective hepatic resection without extrahepatic resection at the Department of General-, Visceral- and Transplantation Surgery, University of Heidelberg are enrolled into the trial and randomized intraoperatively to hepatic resection by the clamp-crushing technique and stapler hepatectomy, respectively. The primary endpoint is total intraoperative blood loss. A set of general and surgical variables are documented as secondary endpoints. Patients and outcome-assessors are blinded for the treatment intervention. Discussion The CRUNSH Trial is the first randomized controlled trial to evaluate efficacy and safety of stapler hepatectomy compared to the clamp-crushing technique for parenchymal transection during elective hepatic resection. Trial Registration ClinicalTrials.gov: NCT01049607 PMID:21888669

Saugus River and Tributaries, Lynn Malden, Revere and Saugus, Massachusetts. Flood Damage Reduction. Volume 8. Appendix K. Environmental

DTIC Science & Technology

1989-06-01

K10 Summary of Soil Analyses for the Salt Marsh Transects K32 KI1 Plant Community Composition Data Along Compartment K33 B Transect K12 Plant...Community Composition Data Along Compartment K33 I Transect K13 Plant Community Composition Data Along Compartment K33 K1 Transect K14 Plant Community... Composition Data Along Compartment K34 K3 Transect K15 Plant Community Composition Data Along Compartment K34 L2 Transect K16 Plant Community Composition

Top soil radioactivity assessment in a high natural radiation background area: the case of Vinaninkarena, Antsirabe-Madagascar.

PubMed

Rabesiranana, Naivo; Rasolonirina, Martin; Terina, Franck; Solonjara, Asivelo F; Andriambololona, Raoelina

2008-11-01

The village of Vinaninkarena, Antsirabe, Madagascar (47 degrees 02'40''E, 19 degrees 57'17''S) is located in a high natural radioactivity area. In order to evaluate the natural radionuclide content in soil, sampling was done on-site by the transect method (85 soil samples) and off-site through transects across and beyond the region (up to a range of 100 km), to determine the natural radioactivity variation within vs. outside the region, and to detect significant differences, taking into account spatial variability.

Topographic, bioclimatic, and vegetation characteristics of three ecoregion classification systems in North America: Comparisons along continent-wide transects

USGS Publications Warehouse

Thompson, R.S.; Shafer, S.L.; Anderson, K.H.; Strickland, L.E.; Pelltier, R.T.; Bartlein, P.J.; Kerwin, M.W.

2005-01-01

Ecoregion classification systems are increasingly used for policy and management decisions, particularly among conservation and natural resource managers. A number of ecoregion classification systems are currently available, with each system defining ecoregions using different classification methods and different types of data. As a result, each classification system describes a unique set of ecoregions. To help potential users choose the most appropriate ecoregion system for their particular application, we used three latitudinal transects across North America to compare the boundaries and environmental characteristics of three ecoregion classification systems [Ku??chler, World Wildlife Fund (WWF), and Bailey]. A variety of variables were used to evaluate the three systems, including woody plant species richness, normalized difference in vegetation index (NDVI), and bioclimatic variables (e.g., mean temperature of the coldest month) along each transect. Our results are dominated by geographic patterns in temperature, which are generally aligned north-south, and in moisture, which are generally aligned east-west. In the west, the dramatic changes in physiography, climate, and vegetation impose stronger controls on ecoregion boundaries than in the east. The Ku??chler system has the greatest number of ecoregions on all three transects, but does not necessarily have the highest degree of internal consistency within its ecoregions with regard to the bioclimatic and species richness data. In general, the WWF system appears to track climatic and floristic variables the best of the three systems, but not in all regions on all transects. ?? 2005 Springer Science+Business Media, Inc.

Seasonal and Spatial Variation of Particulate Cadmium and Phosphorous along Line P in the Northeast Pacific

NASA Astrophysics Data System (ADS)

Bourne, H.; Bishop, J. K. B.; Wood, T.

2016-02-01

Line P is a transect along 50°N in the subarctic North Pacific that stretches from Sanich Inlet out to Ocean Station PAPA (OSP). Between February 1996 and March the following year, size fraction suspended particulate matter was collected (<1 μm, 1-51 μm and >51 μm) using the Multiple Unit Large Volume Filtration System (MULVFS) technique. Over the course of 4 cruises, 17 MULFS casts were taken. Using this large dataset, we examine the seasonal and spatial variability of cadmium content of particles. Throughout this one year time span, the particulate Cd uptake relative to P varied by a factor of two at individual sites during different seasons and by a factor of three at different sites during the same season. Typically, the Cd:P content of phytoplankton increases going from Sanich Inlet out toward station PAPA. While Sanich Inlet is an iron and zinc replete coastal environment, OSP is located in an HNLC region with low dissolved Fe and Zn concentrations. We compared the Cd:P profiles along the Line P transect to that of other divalent metals, specifically Zn, Mn, Co, Ba and Fe. While Fe:P, Mn:P and Co:P are highest in the coastal environment, Cd:P is higher in the open ocean environment. Cd:P peaks in the open ocean station below the mixed layer. We also compare the relationship between oxygen and Cd content in particles. The reason for Cd uptake by marine organisms is still not fully understood; by examining particles in a well-studied region with seasonal, nutrient, environmental and other divalent metal concentrations in particles, we can better understand the causes for variability.

High-speed measurement of an air transect's temperature shift heated by laser beam

NASA Astrophysics Data System (ADS)

Li, WenYu; Jiang, ZongFu; Xi, Fengjie; Li, Qiang; Xie, Wenke

2005-02-01

Laser beam heat the air on the optic path, Beam-deflection optical tomography is a non-intrusive method to measure the 2-dimension temperature distribution in the transect. By means of linear Hartmann Sensor at the rate of 27kHz, the optic path was heated by a 2.7μm HF laser, continuous and high time resolution gradients of optic phase were obtained. the result of analysing and calculation showed the temperament shift in the heated beam path was not higher than 50K when the HF laser power was 9W. The experiment showed that it is a practical non-intrusive temperature shift measurement method for a small area aero-optical medium.

Correlation between terrestrial myriametric and kilometric radio bursts observed with Galileo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Louarn, P.; Hilgers, A.; Roux, A.

The authors present results from wave measurements made by Galileo on transects of the magnetotail between R{sub e} of 30 and 80. They observe radiation in the myriametric and kilometric range. The myriametric radition has a continuous components, and a burstly component which correlated with the bursty nature of the kilometric radiation, originating on auroral field lines much closer to the earth. They present a mechanism to account for this wave activity, and its frequency dependence.

Results from the April 2009 Gulf of Alaska Line Transect Survey (GOALS) in the Navy Training Exercise Area

DTIC Science & Technology

2010-05-01

Fairbanks. Stafford , K. M., D. K. Mellinger, S. E. Moore, and C. G. Fox. 2007. Seasonal variability and detection range modeling of baleen whale ...hours/day surveying a total of 3,519 km (1,900 nmi) and recorded 49 acoustic iv   detections of sperm whales (Physeter macrocephalus) and killer...Alaska have been used to record calls from blue , humpback and fin whales throughout the year ( Stafford et al. 2007). Despite the challenges of

Seasonal Change in Nearshore and Channel Morphology at Packery Channel, A New Inlet Serving Corpus Christi, Texas

DTIC Science & Technology

2011-01-01

position defined by limiting features such as the dune toe or seawall. Individual transects are spaced at 1 to 30 m apart. These surveys usually require...associated nominal depths (MSL) are: 1) a wading survey conducted from the landward limiting feature, such as dune or seawall, to offshore depth of...Hall Pier. The surge forced water up to the dune line adjacent to the channel. The water was funneled toward and into the inlet, introducing sand from

Randomized clinical trial of stapler versus clamp-crushing transection in elective liver resection.

PubMed

Rahbari, N N; Elbers, H; Koch, M; Vogler, P; Striebel, F; Bruckner, T; Mehrabi, A; Schemmer, P; Büchler, M W; Weitz, J

2014-02-01

Various devices have been developed to facilitate liver transection and reduce blood loss in liver resections. None of these has proven superiority compared with the classical clamp-crushing technique. This randomized clinical trial compared the effectiveness and safety of stapler transection with that of clamp-crushing during open liver resection. Patients admitted for elective open liver resection between January 2010 and October 2011 were assigned randomly to stapler transection or the clamp-crushing technique. The primary endpoint was the total amount of intraoperative blood loss. Secondary endpoints included transection time, duration of operation, complication rates and resection margins. A total of 130 patients were enrolled, 65 to clamp-crushing and 65 to stapler transection. There was no difference between groups in total intraoperative blood loss: median (i.q.r.) 1050 (525-1650) versus 925 (450-1425) ml respectively (P = 0·279). The difference in total intraoperative blood loss normalized to the transection surface area was not statistically significant (P = 0·092). Blood loss during parenchymal transection was significantly lower in the stapler transection group (P = 0·002), as were the parenchymal transection time (mean(s.d.) 30(21) versus 9(7) min for clamp-crushing and stapler transection groups respectively; P < 0·001) and total duration of operation (mean(s.d.) 221(86) versus 190(85) min; P = 0·047). There were no significant differences in postoperative morbidity (P = 0·863) or mortality (P = 0·684) between groups. Stapler transection is a safe technique but does not reduce intraoperative blood loss in elective liver resection compared with the clamp-crushing technique. NCT01049607 (http://www.clinicaltrials.gov). © 2014 BJS Society Ltd. Published by John Wiley & Sons Ltd.

Dixie Valley, Nevada playa bathymetry constructed from Landsat TM data

NASA Astrophysics Data System (ADS)

Groeneveld, David P.; Barz, David D.

2014-05-01

A bathymetry model was developed from a series of Landsat Thematic Mapper (TM) images to assist discrimination of hydrologic processes on a low-relief, stable saline playa in Dixie Valley, Nevada, USA. The slope of the playa surface, established by field survey on a reference transect, enabled calculation of relative elevation of the edges of pooled brine mapped from Landsat TM5 band 5 reflectance (TMB5) in the 1.55-1.75 μm shortwave infrared region (SWIR) of the spectrum. A 0.02 TMB5 reflectance threshold accurately differentiated the shallow (1-2 mm depth) edges of pools. Isocontours of equal elevations of pool margins were mapped with the TMB5 threshold, forming concentric rings that were assigned relative elevations according to the position that the pool edges intersected the reference transect. These data were used to fit a digital elevation model and a curve for estimating pooled volume given the distance from the playa edge to the intersection of the pool edge with the reference transect. To project pooled volume using the bathymetric model for any TM snapshot, within a geographic information system, the 0.02 TMB5 threshold is first used to define the edge of the exposed brine. The distance of this edge from the playa edge along the reference transect is then measured and input to the bathymetric equation to yield pooled volume. Other satellite platforms with appropriate SWIR bands require calibration to Landsat TMB5. The method has applicability for filling reservoirs, bodies of water that fluctuate and especially bodies of water inaccessible to acoustic or sounding methods.

North European Transect

NASA Astrophysics Data System (ADS)

Korja, Annakaisa; Heikkinen, Pekka J.; Roslov, Yuri; Ivanova, Nina; Verba, Marc; Sakoulina, Tamara

2010-05-01

A nearly continuous, 3600 km long, NE-running North European Transect (NET) is combined from the existing deep seismic reflection data sets in the Baltic Sea (BABEL, 1600 km), Northern Finland (FIRE 4-4A, 580 km) and Barents Sea (1-AR, 1440 km;). The reflective image of the deep crust is highly dependent on the thickness of the sedimentary cover. The cover is few hundred meters in the Baltic sea, few tens of meters in the land areas and few kilometers in the Barents Sea area. In the Barents Sea area, the seismic image is dominated by the layered structure of the sedimentary basins and the middle and lower crust are poorly imaged. Therefore the Moho boundary in the Barents Sea has been determined from wide-angle reflections. Geologically the transect covers the transition from Phanerozoic Europe to Precambrian Europe and back to the Phanerozoic Barents Sea Shelf. It displays how Northern Europe grew around Baltica in several tectonic episodes involving the formation and destruction of Columbia/Hudsonland, Rodinia and Pangea supercontinents. The paleo plateboundaries are traversed by subvertical transparent zones suggesting transpressional and trantensional environments. The BABEL lines image how the core of Baltica was formed by sequential accretion of microcontinents and arc terranes at the old continental margin during the Svecofennian Orogeny ~1.9-1.8 Ga .When Baltica joined the Columbia supercontinent, new terranes were added to its southern edge in the Sveocbaltic Orogeny (~1.8 Ga). During the dispersal of the Columbia, the Baltic Sea failed rift was formed, rapakivi granitoids were intruded and sedimentary basins were developed. An extended plate margin structure has been imposed on the Rodinian (Sveconorwegian) and Pangean additions (Variscan-Caledonian). Major crustal thinning takes place along a series of subvertical faults across the Trans-European Suture Zone marking the transition from Phanerozoic to Proterozoic Europe. The FIRE lines in Northen Finland image a collage of older continental fragments and intervening basins that have been welded together in Svecofennian and Lapland-Kola orogenies. The Lapland-Kola orogen record the collision of Baltica and Laurentia during the compilation of the Columbia supercontinent. The collisional structures were overprinted by extension associated with the dispersal of Columbia. The Russian Arctic line 1-AR focuses on the Phanerozoic sedimentary cover of the Barents Sea Basin. The line images the transition from Paleoproterozoic Baltica to Neoproterozoic Barentsia. As part of the Rodinia supercontinent formation, Baltica collided with Barentsia resulting in Timanide orogeny. During the break-up of Rodinia an aborted rift was formed within the Barentsia. Later peripheral tectonic events modified the interior parts of Barentsia that acted first as a back arc basin and later as a foreland basin to the Uralian and Caledonian orogen during the formation of the Pangea supercontinent.

Intracorporeal reconstruction after laparoscopic pylorus-preserving gastrectomy for middle-third early gastric cancer: a hybrid technique using linear stapler and manual suturing.

PubMed

Koeda, Keisuke; Chiba, Takehiro; Noda, Hironobu; Nishinari, Yutaka; Segawa, Takenori; Akiyama, Yuji; Iwaya, Takeshi; Nishizuka, Satoshi; Nitta, Hiroyuki; Otsuka, Koki; Sasaki, Akira

2016-05-01

Laparoscopy-assisted pylorus-preserving gastrectomy has been increasingly reported as a treatment for early gastric cancer located in the middle third of the stomach because of its low invasiveness and preservation of pyloric function. Advantages of a totally laparoscopic approach to distal gastrectomy, including small wound size, minimal invasiveness, and safe anastomosis, have been recently reported. Here, we introduce a new procedure for intracorporeal gastro-gastrostomy combined with totally laparoscopic pylorus-preserving gastrectomy (TLPPG). The stomach is transected after sufficient lymphadenectomy with preservation of infrapyloric vessels and vagal nerves. The proximal stomach is first transected near the Demel line, and the distal side is transected 4 to 5 cm from the pyloric ring. To create end-to-end gastro-gastrostomy, the posterior wall of the anastomosis is stapled with a linear stapler and the anterior wall is made by manual suturing intracorporeally. We retrospectively assessed the postoperative surgical outcomes via medical records. The primary endpoint in the present study is safety. Sixteen patients underwent TLPPG with intracorporeal reconstruction. All procedures were successfully performed without any intraoperative complications. The mean operative time was 275 min, with mean blood loss of 21 g. With the exception of one patient who had gastric stasis, 15 patients were discharged uneventfully between postoperative days 8 and 11. Our novel hybrid technique for totally intracorporeal end-to-end anastomosis was performed safely without mini-laparotomy. This technique requires prospective validation.

Novel quantitative calibration approach for multi-configuration electromagnetic induction (EMI) systems using data acquired at multiple elevations

NASA Astrophysics Data System (ADS)

Tan, Xihe; Mester, Achim; von Hebel, Christian; van der Kruk, Jan; Zimmermann, Egon; Vereecken, Harry; van Waasen, Stefan

2017-04-01

Electromagnetic induction (EMI) systems offer a great potential to obtain highly resolved layered electrical conductivity models of the shallow subsurface. State-of-the-art inversion procedures require quantitative calibration of EMI data, especially for short-offset EMI systems where significant data shifts are often observed. These shifts are caused by external influences such as the presence of the operator, zero-leveling procedures, the field setup used to move the EMI system and/or cables close by. Calibrations can be performed by using collocated electrical resistivity measurements or taking soil samples, however, these two methods take a lot of time in the field. To improve the calibration in a fast and concise way, we introduce a novel on-site calibration method using a series of apparent electrical conductivity (ECa) values acquired at multiple elevations for a multi-configuration EMI system. No additional instrument or pre-knowledge of the subsurface is needed to acquire quantitative ECa data. By using this calibration method, we correct each coil configuration, i.e., transmitter and receiver coil separation and the horizontal or vertical coplanar (HCP or VCP) coil orientation with a unique set of calibration parameters. A multi-layer soil structure at the corresponding measurement location is inverted together with the calibration parameters using full-solution Maxwell equations for the forward modelling within the shuffled complex evolution (SCE) algorithm to find the optimum solution under a user-defined parameter space. Synthetic data verified the feasibility for calibrating HCP and VCP measurements of a custom made six-coil EMI system with coil offsets between 0.35 m and 1.8 m for quantitative data inversions. As a next step, we applied the calibration approach on acquired experimental data from a bare soil test field (Selhausen, Germany) for the considered EMI system. The obtained calibration parameters were applied to measurements over a 30 m transect line that covers a range of conductivities between 5 and 40 mS/m. Inverted calibrated EMI data of the transect line showed very similar electrical conductivity distributions and layer interfaces of the subsurface compared to reference data obtained from vertical electrical sounding (VES) measurements. These results show that a combined calibration and inversion of multi-configuration EMI data is possible when including measurements at different elevations, which will speed up the measurement process to obtain quantitative EMI data since the labor intensive electrical resistivity measurement or soil coring is not necessary anymore.

Evaluation of terrestrial and streamside salamander monitoring techniques at Shenandoah National Park

USGS Publications Warehouse

Jung, R.E.; Droege, S.; Sauer, J.R.; Landy, R.B.

2000-01-01

In response to concerns about amphibian declines, a study evaluating and validating amphibian monitoring techniques was initiated in Shenandoah and Big Bend National Parks in the spring of 1998. We evaluate precision, bias, and efficiency of several sampling methods for terrestrial and streamside salamanders in Shenandoah National Park and assess salamander abundance in relation to environmental variables, notably soil and water pH. Terrestrial salamanders, primarily redback salamanders (Plethodon cinereus), were sampled by searching under cover objects during the day in square plots (10 to 35 m2). We compared population indices (mean daily and total counts) with adjusted population estimates from capture-recapture. Analyses suggested that the proportion of salamanders detected (p) during sampling varied among plots, necessitating the use of adjusted population estimates. However, adjusted population estimates were less precise than population indices, and may not be efficient in relating salamander populations to environmental variables. In future sampling, strategic use of capture-recapture to verify consistency of p's among sites may be a reasonable compromise between the possibility of bias in estimation of population size and deficiencies due to inefficiency associated with the estimation of p. The streamside two-lined salamander (Eurycea bislineata) was surveyed using four methods: leaf litter refugia bags, 1 m2 quadrats, 50 x 1 m visual encounter transects, and electric shocking. Comparison of survey methods at nine streams revealed congruent patterns of abundance among sites, suggesting that relative bias among the methods is similar, and that choice of survey method should be based on precision and logistical efficiency. Redback and two-lined salamander abundance were not significantly related to soil or water pH, respectively.

Procedural Documentation and Accuracy Assessment of Bathymetric Maps and Area/Capacity Tables for Small Reservoirs

USGS Publications Warehouse

Wilson, Gary L.; Richards, Joseph M.

2006-01-01

Because of the increasing use and importance of lakes for water supply to communities, a repeatable and reliable procedure to determine lake bathymetry and capacity is needed. A method to determine the accuracy of the procedure will help ensure proper collection and use of the data and resulting products. It is important to clearly define the intended products and desired accuracy before conducting the bathymetric survey to ensure proper data collection. A survey-grade echo sounder and differential global positioning system receivers were used to collect water-depth and position data in December 2003 at Sugar Creek Lake near Moberly, Missouri. Data were collected along planned transects, with an additional set of quality-assurance data collected for use in accuracy computations. All collected data were imported into a geographic information system database. A bathymetric surface model, contour map, and area/capacity tables were created from the geographic information system database. An accuracy assessment was completed on the collected data, bathymetric surface model, area/capacity table, and contour map products. Using established vertical accuracy standards, the accuracy of the collected data, bathymetric surface model, and contour map product was 0.67 foot, 0.91 foot, and 1.51 feet at the 95 percent confidence level. By comparing results from different transect intervals with the quality-assurance transect data, it was determined that a transect interval of 1 percent of the longitudinal length of Sugar Creek Lake produced nearly as good results as 0.5 percent transect interval for the bathymetric surface model, area/capacity table, and contour map products.

The response of tundra springtails (Collembola, Hexapoda) to human activity on the Murman coast of the Kola Penisula, Russia

NASA Astrophysics Data System (ADS)

Olejniczak, Izabella; Boniecki, Paweł; Kaliszewicz, Anita; Panteleeva, Ninel

2018-03-01

This study was carried out in the Dalne Zelentsy settlement (69°07‧N, 36°03‧E) on the Barents Sea of the Kola Penisula in Russia. Three transects were established: the 'new garden transect'; the 'old garden transect'; and the 'settlement transect'. Overall, the number of springtails increased with distance from the 'settlement' and decreased from the 'old garden' towards the tundra. However, in the case of the 'new garden transect' there were no clear trends in springtail abundance. Eleven species of springtail were found, with Parisotoma notabilis being found at each of the studied areas along the transects. Trends in the species diversity of the springtail communities were not clear, and the values of H‧ ranged from 1.36 to 2.08. The springtail communities located 10 m from the 'new garden' and the 'old garden' were characterized by low species diversity compared with the other sites along the transects (H‧ values of 1.36 and 1.67, respectively). There were no differences in species diversity among the springtail communities along the 'settlement transect'.

[Effects of grazing on zoobenthos community in beach].

PubMed

Zhao, Yun-long; An, Chuan-guang; Lin, Ling; Duan, Xiao-wei; Zeng, Cuo; Cui, Li-li

2007-05-01

In May (spring) and October (autumn) 2005, the effects of grazing on the zoobenthos community in Chongming Dongtan wetland of Shanghai were investigated. A total of 3 transects including 90 sampling plots were set up. Transects I and II were in feeding area, and transect III was in non-pasture area. All of these three transects were set in mid-tidal zone. 13 zoobenthos species were observed, with 7 species of arthropod, 4 species of mollusk, and 2 species of annelid. In spring, there were 6, 8 and 10 species in transects I , II and III while in autumn, the species number was 6, 8 and 12, respectively. The mean abundance of zoobenthos community in all transects was higher in autumn than in spring, and transect III had the highest mean abundance and biomass both in autumn and spring. Transect III also had the highest evenness, richness and diversity, indicating that grazing could change the species distribution of zoobenthos, and affect their abundance and biomass to different degree. Grazing had made certain negative effects on the biodiversity of zoobenthos community in Chongming Dongtan wetland.

Distribution and Local Movement of Humpback Whales in Okinawan Waters Depend on Sex and Reproductive Status.

PubMed

Kobayashi, Nozomi; Okabe, Haruna; Kawazu, Isao; Higashi, Naoto; Kato, Keisuke; Miyahara, Hirokazu; Nakamura, Gen; Kato, Hidehiro; Uchida, Senzo

2017-02-01

The distribution and local movement patterns of humpback whales in waters off the west coast of Okinawa Island, southwest Japan, were investigated using line transect and photo-identification methodologies. Line transect surveys were conducted from 2011 to 2014 and photo-identification survey from 2006 to 2012. During the surveys, humpback whales aggregated in the areas around Ie and Kerama Islands, and tended to travel along the inshore coast of Okinawa Island when they move locally between those two sites. A total of 496 humpback whales of the known sex were photo-identified (322 males, 75 females and 99 females with a calf). Of these, 24.8% were confirmed moving locally between the sites of Ie and Kerama Islands within the same season. Frequency rates of the local movement for males, females and females with a calf were 41.9, 25.0, and 15.1%, respectively; the frequency of local movement for males was significantly higher than that for females and females with a calf. These results indicate that male humpback whales tend to move more actively between the local breeding sites as compared to females and females with a calf. We speculate that the males search for more opportunities to mate, whereas females with a calf tend to remain in the same areas to nurse their calves. These findings extend our knowledge of the habitat use and reproductive ecology of humpback whales in Okinawan waters, which remain poorly understood.

Rotational stability test for the diagnosis of radial collateral ligament rupture in the fingers: Anatomical study.

PubMed

Lazarus, P; Hidalgo Diaz, J J; Prunières, G; Pire, E; Taleb, C; Honecker, S; Bellemère, P; Fontaine, C; Liverneaux, P A

2017-04-01

Diagnosing rupture of the radial collateral ligament (RCL) of the finger metacarpophalangeal (MCP) joints is difficult. The aim of this cadaver study was to validate a rotational test for the MCP after RCL transection. With the MCP and proximal interphalangeal joints in flexion, rotation along the axis of the proximal phalanx was applied through an extended distal interphalangeal joint to 36 cadaver fingers. Each finger's pulp described an arc of pronation and supination that was noted on the palm. The test was repeated three times: before transection, after transection of the proper collateral ligament (CL) and after transection of both the proper and accessory CLs. Rotational arcs were measured in pronation and supination. Mean length of the pronation arc after transection of the main RCL was 17.53mm, while it was only 12.41mm before transection for the supination arc. Mean length of the pronation arc after transection of both CLs was 22.83mm compared to only 11.93mm before transection. Our results show a significant difference in pronation stability of the MCP joint after transection of the RCL proper. We can conclude that this rotational stability test is a valid test for diagnosing RCL rupture in MCP joints. Copyright © 2017 SFCM. Published by Elsevier Masson SAS. All rights reserved.

Remote sensing of hydrologic variables in boreal areas, phase 1

NASA Technical Reports Server (NTRS)

Peck, Eugene L.; Carroll, Thomas R.

1994-01-01

The major effort by HYD-6 members has been to develop a network of flight lines to provide the maximum amount of information on the temporal and spatial variation in soil moisture for the Boreal Ecosystem Atmosphere Study (BOREAS) study areas. Field visits to the southern study area (SSA) were conducted during May 1993 to obtain first hand information on the flight lines that had been previously selected for BOREAS snow studies. In September 1993 airborne gamma radiation surveys were conducted over the SSA, the northern study area (NSA), and for five flight lines along the transect between the two study areas. In situ measurements of soil moisture and water content of the moss/humus layer were obtained for calibration of selected gamma radiation flights lines in the SSA and for two of the transit lines. The flight lines for which soil moisture will be measured during the three IFC's during the summer of 1994 is a subset of the total flight lines that have been flown for the snow surveys. During the WFC in February 1994, airborne gamma radiation surveys were flown over all of the flight lines. Members of HYD-4 collected in-situ measurements (soil moisture, water content of the moss/humus layer, and water equivalent of the snow cover).

Detailed north-south cross section showing environments of deposition, organic richness, and thermal maturities of lower Tertiary rocks in the Uinta Basin, Utah

USGS Publications Warehouse

Johnson, Ronald C.

2014-01-01

The Uinta Basin of northeast Utah has produced large amounts of hydrocarbons from lower Tertiary strata since the 1960s. Recent advances in drilling technologies, in particular the development of efficient methods to drill and hydraulically fracture horizontal wells, has spurred renewed interest in producing hydrocarbons from unconventional low-permeability dolomite and shale reservoirs in the lacustrine, Eocene Green River Formation. The Eocene Green River Formation was deposited in Lake Uinta, a long-lived saline lake that occupied the Uinta Basin, the Piceance Basin to the east, and the intervening Douglas Creek arch. The focus of recent drilling activity has been the informal Uteland Butte member of the Green River Formation and to a much lesser extent the overlying R-0 oil shale zone of the Green River Formation. Initial production rates ranging from 500 to 1,500 barrels of oil equivalent per day have been reported from the Uteland Butte member from horizontal well logs that are as long as 4,000 feet (ft);. The cross section presented here extends northward from outcrop on the southern margin of the basin into the basin’s deep trough, located just south of the Uinta Mountains, and transects the area where this unconventional oil play is developing. The Monument Butte field, which is one of the fields located along this line of section, has produced hydrocarbons from conventional sandstone reservoirs in the lower part of the Green River Formation and underlying Wasatch Formation since 1981. A major fluvial-deltaic system entered Lake Uinta from the south, and this new line of section is ideal for studying the effect of the sediments delivered by this drainage on hydrocarbon reservoirs in the Green River Formation. The cross section also transects the Greater Altamont-Bluebell field in the deepest part of the basin, where hydrocarbons have been produced from fractured, highly overpressured marginal lacustrine and fluvial reservoirs in the Green River, Wasatch, and North Horn Formations since 1970. Datum for the cross section is sea level so that hydrocarbon source rocks and reservoir rocks could be integrated into the structural framework of the basin.

Synchrotron X-ray microtransections: a non invasive approach for epileptic seizures arising from eloquent cortical areas

PubMed Central

Pouyatos, B.; Nemoz, C.; Chabrol, T.; Potez, M.; Bräuer, E.; Renaud, L.; Pernet-Gallay, K.; Estève, F.; David, O.; Kahane, P.; Laissue, J. A.; Depaulis, A.; Serduc, R.

2016-01-01

Synchrotron-generated X-ray (SRX) microbeams deposit high radiation doses to submillimetric targets whilst minimizing irradiation of neighboring healthy tissue. We developed a new radiosurgical method which demonstrably transects cortical brain tissue without affecting adjacent regions. We made such image-guided SRX microtransections in the left somatosensory cortex in a rat model of generalized epilepsy using high radiation doses (820 Gy) in thin (200 μm) parallel slices of tissue. This procedure, targeting the brain volume from which seizures arose, altered the abnormal neuronal activities for at least 9 weeks, as evidenced by a decrease of seizure power and coherence between tissue slices in comparison to the contralateral cortex. The brain tissue located between transections stayed histologically normal, while the irradiated micro-slices remained devoid of myelin and neurons two months after irradiation. This pre-clinical proof of concept highlights the translational potential of non-invasive SRX transections for treating epilepsies that are not eligible for resective surgery. PMID:27264273

Bilateral Traumatic Globe Luxation with Optic Nerve Transection

PubMed Central

Tok, Levent; Tok, Ozlem Yalcin; Argun, Tugba Cakmak; Yilmaz, Omer; Gunes, Alime; Unlu, Elif Nisa; Sezer, Sezgin; Ibisoglu, Seda; Argun, Mehmet

2014-01-01

Purpose The purpose of this study was to document clinical findings and management of a patient with bilateral globe luxation and optic nerve transection. Materials and Methods A 25-year-old female patient was admitted to the emergency department with bilateral traumatic globe luxation following a motor vehicle accident. Results Visual acuity testing showed no light perception. The right pupil was dilated and bilaterally did not react to light. The globes were bilaterally intact. A computed tomography scan revealed Le Fort type II fractures, bilateral optic nerve transection and disruption of all extraocular muscles. The globes of the patient were bilaterally reduced into the orbit. However, the patient developed phthisis bulbi in the right eye at month 3. Conclusion Globe luxation presents a dramatic clinical picture, and may lead to the development of severe complications due to the concomitance of complete optic nerve dissection and multiple traumas. Even if the luxated globe is repositioned into the orbit, there is still an increased risk of the development of phthisis due to ischemia. PMID:25606034

Importance of designated thoracic trauma surgeons in the management of traumatic aortic transection.

PubMed

Albrink, M H; Rodriguez, E; England, G J; McKeown, P P; Hurst, J M; Rosemurgy, A S

1994-04-01

The medical literature is replete with reports on traumatic aortic transection. These reports have delineated many factors regarding the morbidity and high mortality of this ominous injury. Most reports are reviews of the collective experience of a single institution over a period of years. It is likely that many authors writing on the subject of traumatic aortic transection have no experience with operative repair of the lesion. There has been debate about the various techniques of primary repair versus graft insertion, as well as the question of whether cardiopulmonary bypass is superior to the "clamp and sew" methods. No studies have directly examined the skills of individual surgeons with respect to outcome. We present the results of a study from a university-affiliated level I trauma center in which the outcomes from various groups of surgeons were compared over a 5-year period. The information in this study strongly suggests that designated thoracic trauma surgeons who are promptly available and have dedicated interests in trauma patients achieve better results.

Synchrotron X-ray microtransections: a non invasive approach for epileptic seizures arising from eloquent cortical areas

NASA Astrophysics Data System (ADS)

Pouyatos, B.; Nemoz, C.; Chabrol, T.; Potez, M.; Bräuer, E.; Renaud, L.; Pernet-Gallay, K.; Estève, F.; David, O.; Kahane, P.; Laissue, J. A.; Depaulis, A.; Serduc, R.

2016-06-01

Synchrotron-generated X-ray (SRX) microbeams deposit high radiation doses to submillimetric targets whilst minimizing irradiation of neighboring healthy tissue. We developed a new radiosurgical method which demonstrably transects cortical brain tissue without affecting adjacent regions. We made such image-guided SRX microtransections in the left somatosensory cortex in a rat model of generalized epilepsy using high radiation doses (820 Gy) in thin (200 μm) parallel slices of tissue. This procedure, targeting the brain volume from which seizures arose, altered the abnormal neuronal activities for at least 9 weeks, as evidenced by a decrease of seizure power and coherence between tissue slices in comparison to the contralateral cortex. The brain tissue located between transections stayed histologically normal, while the irradiated micro-slices remained devoid of myelin and neurons two months after irradiation. This pre-clinical proof of concept highlights the translational potential of non-invasive SRX transections for treating epilepsies that are not eligible for resective surgery.

Field data sets for seagrass biophysical properties for the Eastern Banks, Moreton Bay, Australia, 2004-2014

NASA Astrophysics Data System (ADS)

Roelfsema, Chris M.; Kovacs, Eva M.; Phinn, Stuart R.

2015-08-01

This paper describes seagrass species and percentage cover point-based field data sets derived from georeferenced photo transects. Annually or biannually over a ten year period (2004-2014) data sets were collected using 30-50 transects, 500-800 m in length distributed across a 142 km2 shallow, clear water seagrass habitat, the Eastern Banks, Moreton Bay, Australia. Each of the eight data sets include seagrass property information derived from approximately 3000 georeferenced, downward looking photographs captured at 2-4 m intervals along the transects. Photographs were manually interpreted to estimate seagrass species composition and percentage cover (Coral Point Count excel; CPCe). Understanding seagrass biology, ecology and dynamics for scientific and management purposes requires point-based data on species composition and cover. This data set, and the methods used to derive it are a globally unique example for seagrass ecological applications. It provides the basis for multiple further studies at this site, regional to global comparative studies, and, for the design of similar monitoring programs elsewhere.

Status of important prey fishes in the U.S. waters of Lake Ontario, 2013: Introduction and methods, alewife, rainbow smelt, sculpins, and round goby

USGS Publications Warehouse

Walsh, Maureen; Weidel, Brian C.; Connerton, Michael J.

2014-01-01

Lake Ontario has a mean depth of 86 m (282 ft) and a maximum depth of 244 m (801 ft) (Herdendorf 1982). The southern, New York portion of the lake has the deepest water (Figure 1). In New York waters, about 67% of the lake is <160 m (525 ft) deep and about 82% of the lake is <180 m (591 ft) deep. The U.S. Geological Survey (USGS) and New York State Department of Environmental Conservation (NYSDEC) have cooperatively assessed Lake Ontario prey fishes each year since 1978. Bottom trawl assessments were initially focused on Alewife Alosa pseudoharengus (April), Rainbow Smelt Osmerus mordax (June), and Slimy Sculpin Cottus cognatus (October). Seasonal survey timing corresponded to the peak catches in 1972 when collections were made every month May to October (Owens et al. 2003). Twelve transects were established at approximately 25-km intervals along the U.S. shoreline (Figure 2). Alewife assessment was conducted at all transects, Rainbow Smelt assessment at all transects except Fair Haven, and six transects representing eastern, southern, and western lake areas were sampled for Slimy Sculpin (Figure 2). Changes in the Lake Ontario ecosystem (species invasion, oligotrophication, native species rebound) require ongoing evaluation of current methods which sometimes necessitate redistribution of trawl effort, or changes in sampling designs and/or gear. For instance, the spring Alewife assessment is now used also to assess invasive Round Goby Neogobius melanostomus population dynamics. Likewise, the fall benthic fish assessment (formerly sculpin assessment) now also tracks dynamics of the rebounding native Deepwater Sculpin Myoxocephalus thompsonii population, the apparent declining population of Slimy Sculpin, and fall distribution of Round Goby.

An aerial survey method to estimate sea otter abundance

USGS Publications Warehouse

Bodkin, James L.; Udevitz, Mark S.; Garner, Gerald W.; Amstrup, Steven C.; Laake, Jeffrey L.; Manly, Bryan F.J.; McDonald, Lyman L.; Robertson, Donna G.

1999-01-01

Sea otters (Enhydra lutris) occur in shallow coastal habitats and can be highly visible on the sea surface. They generally rest in groups and their detection depends on factors that include sea conditions, viewing platform, observer technique and skill, distance, habitat and group size. While visible on the surface, they are difficult to see while diving and may dive in response to an approaching survey platform. We developed and tested an aerial survey method that uses intensive searches within portions of strip transects to adjust for availability and sightability biases. Correction factors are estimated independently for each survey and observer. In tests of our method using shore-based observers, we estimated detection probabilities of 0.52-0.72 in standard strip-transects and 0.96 in intensive searches. We used the survey method in Prince William Sound, Alaska to estimate a sea otter population size of 9,092 (SE = 1422). The new method represents an improvement over various aspects of previous methods, but additional development and testing will be required prior to its broad application.

Barrier effects of remote high mountain on atmospheric metal transport in the eastern Tibetan Plateau.

PubMed

Bing, Haijian; Zhou, Jun; Wu, Yanhong; Luo, Xiaosan; Xiang, Zhongxiang; Sun, Hongyang; Wang, Jipeng; Zhu, He

2018-07-01

Anthropogenic metals adsorbed on suspended fine particles can be deposited on remote and inaccessible high mountains by long-range atmospheric transport. In this study, we investigated the cadmium (Cd) and lead (Pb) in the soils, mosses and rainfall of three transects on the Gongga Mountain, eastern Tibetan Plateau, to understand the mountain interception effects on their atmospheric transport. The concentrations of Cd and Pb in the soils and mosses displayed a pattern of eastern transect>northern transect>western transect. The distribution of Cd and Pb on the eastern transect increased from 2000 to 2900m a.s.l. (above sea level), decreased toward the timberline, and increased again with altitude; on the northern transect, it generally decreased with altitude whereas a distribution trend was not clearly observed on the western transect. The Cd and Pb concentrations in the rainfall of the eastern transect generally decreased with altitude, and they were higher inside forests than outside forests and temporally higher in the winter than the summer. The Pb isotopic ratios coupled with moss bio-monitoring distinguished anthropogenic sources of Cd and Pb on the eastern and northern transects, whereas bedrock weathering was the main source of Cd and Pb on the western transect. We proposed a conceptual model to delineate the effects of terrain, local climate and vegetation on the transport of atmospheric metals. Our results highlighted the high mountains in the eastern Tibetan Plateau as an effective natural barrier limiting atmospheric metal transport. Copyright © 2018 Elsevier B.V. All rights reserved.

Comparison of Two Multifractal Analysis Methods: Generalized Structure Function and Multifractal Spectrum

NASA Astrophysics Data System (ADS)

Morato, M. Carmen; Castellanos, M. Teresa; Bird, Nigel; Tarquis, Ana M.

2016-04-01

Soil variability has often been a constant expected factor to take in account in soil studies. This variability could be considered to be composed of "functional" variations plus random fluctuations or noise. Multifractal formalism, first proposed by Mandelbrot (1982), is suitable for variables with self-similar distribution on a spatial domain. Multifractal analysis can provide insight into spatial variability of crop or soil parameters. In soil science, it has been quite popular to characterize the scaling property of a variable measured along a transect as a mass distribution of a statistical measure on a length domain of the studied transect. To do this, it divides it into a number of self similar segments and estimate the partition function and mass function. Based on this, the multifractal spectra (MFS) is calculated. However, another technique can be applied focus its attention in the variations of a measure analyzing the moments of the absolute differences at different scales, the Generalized Structure Function (GSF), and extracting the Generalized Hurst exponents. The aim of this study is to compare both techniques in a transect data. A common 1024 m transect across arable fields at Silsoe in Bedfordshire, east-central England were analyzed with these two multifractal methods. Properties studied were total porosity (Porosity), gravimetric water content (GWC) and nitrogen oxide flux (NO2 flux). The results showed in both methods that NO2 flux presents a clear multifractal character and a weak one in the GWC and Porosity cases. Several parameters were calculated from both methods and are discussed. On the other hand, using the partition function all the scale ranges were used, meanwhile in the GSF a shorter range of scales showed linear behavior in the bilog plots used to estimate the parameters. GWC exhibits a linear pattern from increments of 4 till 256 meters, Porosity showed this behavior from 4 till 64 meters. In case of NO2 flux only from 32 to 256 meters showed it. However, the relation between the mass exponent function and the GSF, found in the literature, was positively verified in the three variables.

Evaluating rapid ground sampling and scaling estimated plant cover using UAV imagery up to Landsat for mapping arctic vegetation

NASA Astrophysics Data System (ADS)

Nelson, P.; Paradis, D. P.

2017-12-01

The small stature and spectral diversity of arctic plant taxa presents challenges in mapping arctic vegetation. Mapping vegetation at the appropriate scale is needed to visualize effects of disturbance, directional vegetation change or mapping of specific plant groups for other applications (eg. habitat mapping). Fine spatial grain of remotely sensed data (ca. 10 cm pixels) is often necessary to resolve patches of many arctic plant groups, such as bryophytes and lichens. These groups are also spectrally different from mineral, litter and vascular plants. We sought to explore method to generate high-resolution spatial and spectral data to explore better mapping methods for arctic vegetation. We sampled ground vegetation at seven sites north or west of tree-line in Alaska, four north of Fairbanks and three northwest of Bethel, respectively. At each site, we estimated cover of plant functional types in 1m2 quadrats spaced approximately every 10 m along a 100 m long transect. Each quadrat was also scanned using a field spectroradiometer (PSR+ Spectral Evolution, 400-2500 nm range) and photographed from multiple perspectives. We then flew our small UAV with a RGB camera over the transect and at least 50 m on either side collecting on imagery of the plot, which were used to generate a image mosaic and digital surface model of the plot. We compare plant functional group cover ocular estimated in situ to post-hoc estimation, either automated or using a human observer, using the quadrat photos. We also compare interpolated lichen cover from UAV scenes to estimated lichen cover using a statistical models using Landsat data, with focus on lichens. Light and yellow lichens are discernable in the UAV imagery but certain lichens, especially dark colored lichens or those with spectral signatures similar to graminoid litter, present challenges. Future efforts will focus on integrating UAV-upscaled ground cover estimates to hyperspectral sensors (eg. AVIRIS ng) for better combined spectral and spatial resolution.

Comparison between surgical and standing percutaneous contact Nd:YAG laser periosteal transection for potential treatment of equine limb deformities

NASA Astrophysics Data System (ADS)

Tate, Lloyd P.; Baines, Steven J.; Meuten, Donald J.; Stefanacci, J.

1994-09-01

Medial and lateral aspects of both radiuses were subjected to periosteal transection of nine healthy equine foals. One site per foal was subjected to surgical periosteal transection and elevation under general anesthesia. The remaining three sites of each foal after injection of a local anesthetic received Nd:YAG contact percutaneous periosteal transection. All radiuses were evaluated radiographically prior to periosteal transection and immediately prior to euthanasia. Foals were euthanized at 3 days, 31 to 34 days, and 67 days post-periosteal transection and gross postmortem and histologic examination performed on each site. Radiographically, periosteal proliferation occurred at all the conventional surgery sites and a majority of the percutaneous laser sites by 30 days post-treatment and was present at 67 days. No limb angulations were noted to occur in any of the foals. The conclusion of the study was that Nd:YAG percutaneous laser periosteal transection was successful in producing periosteal obliteration but with a different histologic appearance than that produced by conventional surgery.

Non-transecting bulbar urethroplasty

PubMed Central

Andrich, Daniela E.; Mundy, Anthony R.

2015-01-01

Excision and end-to-end anastomosis (EPA) has been the preferred urethroplasty technique for short bulbar strictures and is associated with an excellent functional outcome. Driven by concerns over the potential morbidity associated with dividing the urethra, therefore compromising spongiosal blood flow, as well as spongiofibrosis being superficial in the majority of non-traumatic bulbar strictures, the non-transecting technique for bulbar urethroplasty has been developed with the aim of achieving the same success as EPA without the morbidity associated with transection. This manuscript highlights the fundamental principles underlying the ongoing debate—transection or non-transection of the strictured bulbar urethra? The potential advantages of avoiding dividing the corpus spongiosum of the urethra are discussed. The non-transecting anastomotic procedure together with its various modifications are decribed in detail. Our experience with this technique is presented. Non-transecting excision of spongiofibrosis with preservation of well vascularised underlying spongiosum provides an excellent alternative to dividing the urethra during urethroplasty for short non-traumatic proximal bulbar strictures. PMID:26816808

Large-Vessel Sealing in Laparoscopic Colectomy with an Ultrasonic Device

PubMed Central

Plasencia, Gustavo; Van der Speeten, Kurt; Hinoul, Piet; Batiller, Jonathan; Severin, Kimberley S.; Schwiers, Michael L.; Rockall, Tim

2016-01-01

Background and Objective: The Harmonic ACE+7 Shears with Advanced Hemostasis Mode (Ethicon, Somerville, NJ, USA) is an ultrasonic device designed to transect and seal vessels up to 7 mm in diameter. The device applies an algorithm that optimizes ultrasonic energy delivery combined with a longer sealing cycle. The purpose of this study was to assess the initial clinical experience with the Harmonic device by evaluating large-vessel sealing during laparoscopic colectomy in consecutive cases. Methods: This prospective, multicenter, observational series involved 40 adult patients who were to undergo elective laparoscopic colectomy where dissection and transection of the inferior mesenteric artery was indicated. The primary study endpoint was first-pass hemostasis, defined as a single activation of the Advanced Hemostasis Mode to transect and seal the inferior mesenteric artery. The use of any additional energy device or hemostatic product to establish or maintain hemostasis was noted. Patients were observed after surgery for ∼4 weeks for adverse events that were considered to be related to the study procedure or study device. Descriptive statistical analyses were performed for study endpoints. Results: Forty patients underwent the laparoscopic colectomy procedure. First-pass hemostasis of the inferior mesenteric artery was achieved and maintained in all 40 patients, with no required additional hemostatic measures. Exposure of the vessel was reported as skeletonized in 22 of 40 (55%) patients. Mean transection time was 21.9 ± 7.4 s. One adverse event (postoperative anemia) was considered possibly related to the study device. Conclusion: In this initial clinical consecutive series, the device demonstrated successful transection and sealing of the large mesenteric vessels during laparoscopic colorectal surgery. PMID:27186065

Major- and trace-element concentrations in soils from two continental-scale transects of the United States and Canada

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Garrett, Robert G.; Klassen, Rodney; Kilburn, James E.; Horton, John D.; King, Harley D.; Goldhaber, Martin B.; Morrison, Jean M.

2005-01-01

This report contains major- and trace-element concentration data for soil samples collected from 265 sites along two continental-scale transects in North America. One of the transects extends from northern Manitoba to the United States-Mexico border near El Paso, Tex. and consists of 105 sites. The other transect approximately follows the 38th parallel from the Pacific coast of the United States near San Francisco, Calif., to the Atlantic coast along the Maryland shore and consists of 160 sites. Sampling sites were defined by first dividing each transect into approximately 40-km segments. For each segment, a 1-km-wide latitudinal strip was randomly selected; within each strip, a potential sample site was selected from the most representative landscape within the most common soil type. At one in four sites, duplicate samples were collected 10 meters apart to estimate local spatial variability. At each site, up to four separate soil samples were collected as follows: (1) material from 0-5 cm depth; (2) O horizon, if present; (3) a composite of the A horizon; and (4) C horizon. Each sample collected was analyzed for total major- and trace-element composition by the following methods: (1) inductively coupled plasmamass spectrometry (ICP-MS) and inductively coupled plasma-atomic emission spectrometry (ICPAES) for aluminum, antimony, arsenic, barium, beryllium, bismuth, cadmium, calcium, cerium, cesium, chromium, cobalt, copper, gallium, indium, iron, lanthanum, lead, lithium, magnesium, manganese, molybdenum, nickel, niobium, phosphorus, potassium, rubidium, scandium, silver, sodium, strontium, sulfur, tellurium, thallium, thorium, tin, titanium, tungsten, uranium, vanadium, yttrium, and zinc; (2) cold vapor- atomic absorption spectrometry for mercury; (3) hydride generation-atomic absorption spectrometry for antimony and selenium; (4) coulometric titration for carbonate carbon; and (5) combustion for total carbon and total sulfur.

Examining patterns of bat activity in Bandelier National Monument, New Mexico, using walking point transects

USGS Publications Warehouse

Ellison, L.E.; Everette, A.L.; Bogan, M.A.

2005-01-01

We conducted a preliminary study using small field crews, a single Anabat II detector coupled with a laptop computer, and point transects to examine patterns of bat activity at a scale of interest to local resource managers. The study was conducted during summers of 1996–1998 in Bandelier National Monument in the Jemez Mountains of northern New Mexico, a landscape with distinct vegetation zones and high species richness of bats. We developed simple models that described general patterns of acoustic activity within 4 vegetation zones based primarily on nightly variation and a qualitative index of habitat complexity. Bat acoustic activity (number of bat passes&sol point) did not vary dramatically among a limited sample of transects within a vegetation zone during 1996. In 1997 and 1998, single transects within each vegetation zone were established, and bat activity did not vary annually within these zones. Acoustic activity differed among the 4 vegetation zones of interest, with the greatest activity occurring in riparian canyon bottomland, intermediate activity in coniferous forest and a 1977 burned zone, and lowest activity in piñon-juniper woodlands. We identified 68.5% of 2,529 bat passes recorded during point-transect surveys to species using an echolocation call reference library we established for the area and qualitative characteristics of bat calls. Bat species richness and composition differed among vegetation zones. Results of these efforts were consistent with general knowledge of where different bat species typically forage and with the natural history of bats of New Mexico, suggesting such a method might have value for drawing inferences about bat activity in different vegetation zones.

Incentives Increase Participation in Mass Dog Rabies Vaccination Clinics and Methods of Coverage Estimation Are Assessed to Be Accurate

PubMed Central

Steinmetz, Melissa; Czupryna, Anna; Bigambo, Machunde; Mzimbiri, Imam; Powell, George; Gwakisa, Paul

2015-01-01

In this study we show that incentives (dog collars and owner wristbands) are effective at increasing owner participation in mass dog rabies vaccination clinics and we conclude that household questionnaire surveys and the mark-re-sight (transect survey) method for estimating post-vaccination coverage are accurate when all dogs, including puppies, are included. Incentives were distributed during central-point rabies vaccination clinics in northern Tanzania to quantify their effect on owner participation. In villages where incentives were handed out participation increased, with an average of 34 more dogs being vaccinated. Through economies of scale, this represents a reduction in the cost-per-dog of $0.47. This represents the price-threshold under which the cost of the incentive used must fall to be economically viable. Additionally, vaccination coverage levels were determined in ten villages through the gold-standard village-wide census technique, as well as through two cheaper and quicker methods (randomized household questionnaire and the transect survey). Cost data were also collected. Both non-gold standard methods were found to be accurate when puppies were included in the calculations, although the transect survey and the household questionnaire survey over- and under-estimated the coverage respectively. Given that additional demographic data can be collected through the household questionnaire survey, and that its estimate of coverage is more conservative, we recommend this method. Despite the use of incentives the average vaccination coverage was below the 70% threshold for eliminating rabies. We discuss the reasons and suggest solutions to improve coverage. Given recent international targets to eliminate rabies, this study provides valuable and timely data to help improve mass dog vaccination programs in Africa and elsewhere. PMID:26633821

Seasonal Progression and Interannual Variability of Nutrient and Chlorophyll-a Distributions in the Northern Gulf of Alaska, 1998-2010

NASA Astrophysics Data System (ADS)

Trahanovsky, K.; Whitledge, T. E.

2016-02-01

We examined nutrient and chlorophyll-a (chl) concentrations from bottle samples collected from 0-50 m depth in the Northern Gulf of Alaska along the Seward Line transect on 56 cruises from 1998-2010. We computed monthly average concentrations of macronutrients (N, P, and Si) and chlorophyll-a by depth at four major stations along the transect to describe the regular seasonal progression of the nutricline and typical water column distributions of chlorophyll-a in this seasonally productive, downwelling coastal zone. The across-shelf transect displayed two different patterns of seasonal progression clearly associated with the Alaska Coastal Current (ACC) and Alaskan Stream (AS) current systems. The annual cycle of nutrient drawdown and replenishment is remarkably consistent from year to year within each system and is well correlated with chl measurements. The spring bloom begins earlier and nutrient depletion is sustained longer in the near-shore ACC then in the AS system centered over the shelf break. Chlorophyll-a concentrations frequently peak at 10-20m depth in both systems during July through October, as nutrients remain depleted in the top 10m. Subsurface nutrients (20 - 50 m depth) begin to recover between July and August and then experience a secondary drawdown between August and October, consistent with higher chl levels observed during the fall bloom. Interannual variability in the progression of the nutricline and the relative contribution of subsurface chl to total chl is presented. Physical data demonstrate increasing stratification in this region due to climate change; the implications for nutrient dynamics and primary production are discussed.

The influence of transection site on the development of pancreatic fistula in patients undergoing distal pancreatectomy: A review of 294 consecutive cases.

PubMed

Sell, Naomi M; Pucci, Michael J; Gabale, Salil; Leiby, Benjamin E; Rosato, Ernest L; Winter, Jordan M; Yeo, Charles J; Lavu, Harish

2015-06-01

Pancreatic fistula (PF) is a significant cause of morbidity in patients undergoing distal pancreatectomy (DP), with an incidence of 15-40%. It remains unclear if the location of pancreatic transection affects the rate of PF occurrence. This study examines the correlation between the transection site of the pancreas during DP and the incidence of PF. All cases of DP from October 2005 to January 2012 were reviewed retrospectively from an institutional review board-approved database at the Thomas Jefferson University Hospital. Patient demographics and perioperative outcomes were analyzed. The pancreatic transection location was determined by review of operative reports, and then dichotomized into 2 groups: neck/body or tail. PF were graded following the International Study Group on Pancreatic Fistula guidelines. During the study period, 294 DP were performed with 244 pancreas transections at the neck/body and 50 at the tail. Of the 294 patients, 52 (17.7%) developed a postoperative PF. The incidence of PF after transection at the tail of the pancreas was higher (28%) when compared with transection at the neck/body (15.6%; P = .04). When stratified by PF grade, grade A PF occurred more commonly when transection of the gland was at the tail (22% tail vs 8.2% neck/body; P = .007); however, no difference was found for grade B/C PF (6% tail vs 7.4% neck/body; P = 1). Our data suggest that PF occurs more often when the tail is transected during DP, although the majority are low grade and of minimal clinical significance. More severe PF occurred equally between the transection sites. Copyright © 2015 Elsevier Inc. All rights reserved.

The time course of taste bud regeneration after glossopharyngeal or greater superficial petrosal nerve transection in rats.

PubMed

St John, Steven J; Garcea, Mircea; Spector, Alan C

2003-01-01

We previously have published data detailing the time course of taste bud regeneration in the anterior tongue following transection of the chorda tympani (CT) nerve in the rat. This study extends the prior work by determining the time course of taste bud regeneration in the vallate papilla, soft palate and nasoincisor ducts (NID) following transection of either the glossopharyngeal (GL) or greater superficial petrosal (GSP) nerve. Following GL transection in rats (n = 6 per time point), taste buds reappeared in the vallate papilla between 15 and 28 days after surgery, and returned to 80.3% of control levels (n = 12) of taste buds by 70 days postsurgery. The first appearance and the final percentage of the normal complement of regenerated vallate taste buds after GL transection resembled that seen previously in the anterior tongue after CT transection. However, in the latter case, regenerated taste buds reached asymptotic levels by 42 days after surgery, whereas within the time frame of the present study, a clear asymptotic return of vallate taste buds was not observed. In contrast to the posterior (and anterior) tongue, only 25% of the normal complement of palatal taste buds regenerated by 112 days and 224 days after GSP transection (n = 9). The difference in regenerative capacity might relate to the surgical approach used to transect the GSP. These experiments provide useful parametric data for investigators studying the functional consequences of gustatory nerve transection and regeneration.

Distribution and abundance patterns of the palila on Mauna Kea, Hawaii

USGS Publications Warehouse

van Riper, Charles; Scott, J. Michael; Woodside, D.M.

1978-01-01

Censuses of the known geographical range of the rare and endangered Palila were conducted in January (nonbreeding season) and September (breeding season) 1975. The habitat (mamane and naio forest of Mauna Kea, Hawaii) was divided into five major areas, with each analyzed for vegetational composition, phenology of the predominant tree species, and Palila density. Using a line transect census technique, we determined that: 1) the Palila occupied 5,560 ha, approximately 10% of its former range; 2) Palila populations were more restricted in the nonbreeding season, possibly reflecting their flocking tendency; 3) Palila densities were 38 birds per km2 in the breeding season and 36 birds per km2 in the nonbreeding season; 4) Palila population movements were small, and apparently were correlated with patterns of food availability; and 5) all methods of analysis yielded a projected population of approximately 1,600 birds. These low numbers, coupled with its restricted range, make the Palila one of the most vulnerable endangered species.

Comparison of soil thickness in a zero-order basin in the Oregon Coast Range using a soil probe and electrical resistivity tomography

USGS Publications Warehouse

Morse, Michael S.; Lu, Ning; Godt, Jonathan W.; Revil, André; Coe, Jeffrey A.

2012-01-01

Accurate estimation of the soil thickness distribution in steepland drainage basins is essential for understanding ecosystem and subsurface response to infiltration. One important aspect of this characterization is assessing the heavy and antecedent rainfall conditions that lead to shallow landsliding. In this paper, we investigate the direct current (DC) resistivity method as a tool for quickly estimating soil thickness over a steep (33–40°) zero-order basin in the Oregon Coast Range, a landslide prone region. Point measurements throughout the basin showed bedrock depths between 0.55 and 3.2 m. Resistivity of soil and bedrock samples collected from the site was measured for degrees of saturation between 40 and 92%. Resistivity of the soil was typically higher than that of the bedrock for degrees of saturation lower than 70%. Results from the laboratory measurements and point-depth measurements were used in a numerical model to evaluate the resistivity contrast at the soil-bedrock interface. A decreasing-with-depth resistivity contrast was apparent at the interface in the modeling results. At the field site, three transects were surveyed where coincident ground truth measurements of bedrock depth were available, to test the accuracy of the method. The same decreasing-with-depth resistivity trend that was apparent in the model was also present in the survey data. The resistivity contour of between 1,000 and 2,000 Ωm that marked the top of the contrast was our interpreted bedrock depth in the survey data. Kriged depth-to-bedrock maps were created from both the field-measured ground truth obtained with a soil probe and interpreted depths from the resistivity tomography, and these were compared for accuracy graphically. Depths were interpolated as far as 16.5 m laterally from the resistivity survey lines with root mean squared error (RMSE) = 27 cm between the measured and interpreted depth at those locations. Using several transects and analysis of the subsurface material properties, the direct current (DC) resistivity method is shown to be able to delineate bedrock depth trends within the drainage basin.

Digital Reef Rugosity Estimates Coral Reef Habitat Complexity

PubMed Central

Dustan, Phillip; Doherty, Orla; Pardede, Shinta

2013-01-01

Ecological habitats with greater structural complexity contain more species due to increased niche diversity. This is especially apparent on coral reefs where individual coral colonies aggregate to give a reef its morphology, species zonation, and three dimensionality. Structural complexity is classically measured with a reef rugosity index, which is the ratio of a straight line transect to the distance a flexible chain of equal length travels when draped over the reef substrate; yet, other techniques from visual categories to remote sensing have been used to characterize structural complexity at scales from microhabitats to reefscapes. Reef-scale methods either lack quantitative precision or are too time consuming to be routinely practical, while remotely sensed indices are mismatched to the finer scale morphology of coral colonies and reef habitats. In this communication a new digital technique, Digital Reef Rugosity (DRR) is described which utilizes a self-contained water level gauge enabling a diver to quickly and accurately characterize rugosity with non-invasive millimeter scale measurements of coral reef surface height at decimeter intervals along meter scale transects. The precise measurements require very little post-processing and are easily imported into a spreadsheet for statistical analyses and modeling. To assess its applicability we investigated the relationship between DRR and fish community structure at four coral reef sites on Menjangan Island off the northwest corner of Bali, Indonesia and one on mainland Bali to the west of Menjangan Island; our findings show a positive relationship between DRR and fish diversity. Since structural complexity drives key ecological processes on coral reefs, we consider that DRR may become a useful quantitative community-level descriptor to characterize reef complexity. PMID:23437380

Digital reef rugosity estimates coral reef habitat complexity.

PubMed

Dustan, Phillip; Doherty, Orla; Pardede, Shinta

2013-01-01

Ecological habitats with greater structural complexity contain more species due to increased niche diversity. This is especially apparent on coral reefs where individual coral colonies aggregate to give a reef its morphology, species zonation, and three dimensionality. Structural complexity is classically measured with a reef rugosity index, which is the ratio of a straight line transect to the distance a flexible chain of equal length travels when draped over the reef substrate; yet, other techniques from visual categories to remote sensing have been used to characterize structural complexity at scales from microhabitats to reefscapes. Reef-scale methods either lack quantitative precision or are too time consuming to be routinely practical, while remotely sensed indices are mismatched to the finer scale morphology of coral colonies and reef habitats. In this communication a new digital technique, Digital Reef Rugosity (DRR) is described which utilizes a self-contained water level gauge enabling a diver to quickly and accurately characterize rugosity with non-invasive millimeter scale measurements of coral reef surface height at decimeter intervals along meter scale transects. The precise measurements require very little post-processing and are easily imported into a spreadsheet for statistical analyses and modeling. To assess its applicability we investigated the relationship between DRR and fish community structure at four coral reef sites on Menjangan Island off the northwest corner of Bali, Indonesia and one on mainland Bali to the west of Menjangan Island; our findings show a positive relationship between DRR and fish diversity. Since structural complexity drives key ecological processes on coral reefs, we consider that DRR may become a useful quantitative community-level descriptor to characterize reef complexity.

Crustal Structure of Southern Baja California Peninsula, Mexico, and its Margins

NASA Astrophysics Data System (ADS)

Gonzalez, A.; Robles-Vazquez, L. N.; Requena-Gonzalez, N. A.; Fletcher, J.; Lizarralde, D.; Kent, G.; Harding, A.; Holbrook, S.; Umhoefer, P.; Axen, G.

2007-05-01

Data from 6 deep 2D multichannel seismic (MCS) lines, 1 wide-angle seismic transect and gravity were used to investigate the crustal structure and stratigraphy of the southern Baja California peninsula and its margins. An array of air guns was used as seismic source shooting each 50 m. Each signal was recorded during 16 s by a 6 km long streamer with 480 channels and a spacing of 12.5 m. Seismic waves were also recorded by Ocean Bottom Seismometers (OBS) in the Pacific and the Gulf of California and by portable seismic instruments onshore southern Baja California. MCS data were conventionally processed, to obtain post-stack time-migrated seismic sections. We used a direct method for the interpretation of the wide-angle data, including ray tracing and travel times calculation. In addition to the gravity data recorded onboard, satellite and land public domain data were also used in the gravity modeling. The combined MCS, wide-angle and gravity transect between the Magdalena microplate to the center of Farallon basin in the Gulf of California, crossing the southern Baja California Peninsula to the north of La Paz, allows to verify the existence of the Magdalena microplate under Baja California. We have also confirmed an extensional component of the Tosco-Abreojos fault zone and we have calculated crustal thicknesses. We have also observed the continuation to the south of the Santa Margarita detachment. The MCS seismic sections show a number of fault scarps, submarine canyons and grabens and horsts associated to normal faults offshore southern Baja California peninsula. The normal displacement observed in the Tosco-Abreojos fault zone and some basins in the continental platform, as well as the presence of faulted acoustic basement blocks, evidence that not all extension was accommodated by the Gulf Extensional Province during the middle to late Miocene. Part of the extension was (and is) accommodated in the Baja California Pacific margin. This confirms the observations from previous seismic lines that suggest that the peninsula is a tectonic block not completely transferred to the Pacific plate. In agreement with the seismic facies and the correlations with the available stratigraphic columns of Deep Sea Drilling Program 471 and 474, we generally identify at least three seismostratigraphic units over the acoustic basement. The lower unit reflectors dip towards the palaeo-trench. We identified a Bottom Simulating Reflector (BSR) probably associated to the presence of gas hydrates, which extends at least 200 km along three seismic lines.

Postoperative occipital neuralgia with and without C2 nerve root transection during atlantoaxial screw fixation: a post-hoc comparative outcome study of prospectively collected data.

PubMed

Yeom, Jin S; Buchowski, Jacob M; Kim, Ho-Joong; Chang, Bong-Soon; Lee, Choon-Ki; Riew, K Daniel

2013-07-01

Although routine transection of the C2 nerve root during atlantoaxial segmental screw fixation has been recommended by some surgeons, it remains controversial and to our knowledge no comparative studies have been performed to determine whether transection or preservation of the C2 nerve root affects patient-derived sensory outcomes. The purpose of this study is to specifically analyze patient-derived sensory outcomes over time in patients with intentional C2 nerve root transection during atlantoaxial segmental screw fixation compared with those without transection. This is a post-hoc comparative analysis of prospectively collected patient-derived outcome data. The sample consists of 24 consecutive patients who underwent intentional bilateral transection of the C2 nerve root during posterior atlantoaxial segmental screw fixation (transection group) and subsequent 41 consecutive patients without transection (preservation group). A visual analog scale (VAS) score was used for occipital neuralgia as the primary outcome measure and VAS score for neck pain, neck disability index score and Japanese Orthopedic Association score for cervical myelopathy and recovery rate, with bone union rate as the secondary outcome measure. Patient-derived outcomes including change in VAS score for occipital neuralgia over time were statistically compared between the two groups. This study was not supported by any financial sources and there is no topic-specific conflict of interest related to the authors of this study. Seven (29%) of the 24 patients in the transection group experienced increased neuralgic pain at 1 month after surgery either because of newly developed occipital neuralgia or aggravation of preexisting occipital neuralgia. Four of the seven patients required almost daily medication even at the final follow-up (44 and 80 months). On the other hand, only four (10%) of 41 patients in the preservation group had increased neuralgic pain at 1 month after surgery, and at ≥ 1 year, no patients had increased neuralgic pain. The difference in the prevalence of increased neuralgic pain between the two groups was statistically significant at all time points (3, 6, 12, and 24 months postoperatively) except at 1 month postoperatively. The intensity of neuralgic pain, which preoperatively had not been significantly different between the two groups, was significantly higher in the transection group at the final follow-up. C2 nerve root transection is not a benign procedure and, in our experience, more than a quarter of the patients experience increased neuralgic pain following C2 nerve root transection. Because the prevalence and intensity of postoperative neuralgia was significantly higher with C2 nerve root transection than with its preservation, we recommend against routine C2 nerve root transection when performing atlantoaxial segmental screw fixation. Copyright © 2013 Elsevier Inc. All rights reserved.

Continental-scale patterns in soil geochemistry and mineralogy: results from two transects across the United States and Canada

USGS Publications Warehouse

Woodruff, L.G.; Cannon, W.F.; Eberl, D.D.; Smith, D.B.; Kilburn, J.E.; Horton, J.D.; Garrett, R.G.; Klassen, R.A.

2009-01-01

In 2004, the US Geological Survey (USGS) and the Geological Survey of Canada (GSC) initiated a pilot study that involved collection of more than 1500 soil samples from 221 sites along two continental transects across Canada and the United States. The pilot study was designed to test and refine protocols for a soil geochemical survey of North America. The two transects crossed a wide array of soil parent materials, soil ages, climatic conditions, landforms, land covers and land uses. Sample sites were selected randomly at approximately 40-km intervals from a population defined as all soils of the continent. At each site, soils representing 0 to 5 cm depth, and the O, A, and C horizons, if present, were collected and analyzed for their near-total content of over 40 major and trace elements. Soils from 0–5 cm depth were also collected for analysis of organic compounds. Results from the transects confirm that soil samples collected at a 40-km spacing reveal coherent, continental- to subcontinental-scale geochemical and mineralogical patterns that can be correlated to aspects of underlying soil parent material, soil age and climate influence. The geochemical data also demonstrate that at the continental-scale the dominance of any of these major factors that control soil geochemistry can change across the landscape. Along both transects, soil mineralogy and geochemistry change abruptly with changes in soil parent materials. However, the chemical influence of a soil’s parent material can be obscured by changing climatic conditions. For the transects, increasing precipitation from west to east and increasing temperature from north to south affect both soil mineralogy and geochemistry because of climate effects on soil weathering and leaching, and plant productivity. Regional anomalous metal concentrations can be linked to natural variations in soil parent materials, such as high Ni and Cr in soils developed on ultramafic rocks in California or high P in soils formed on weathered Ordovician limestones in central Kentucky. On local scales, anomalous metal concentrations recognized in soil profiles, such as high P in soils from animal confinement sites, are consistent with local anthropogenic disturbances. At a larger scale, the distribution of Hg across the west to east transect demonstrates that it can be difficult to distinguish between natural or anthropogenic contributions and that many factors can contribute to an element’s spatial distribution. Only three samples in a subset of seventy-three 0–5 cm depth soil samples from the north to south transect had organochlorine pesticides values above the method detection limit, apparently related to historic usage of the pesticides DDT and dieldrin.

A structural transect across the Mongolian Western Altai: Active transpressional mountain building in central Asia

NASA Astrophysics Data System (ADS)

Dickson Cunningham, W.; Windley, Brian F.; Dorjnamjaa, D.; Badamgarov, G.; Saandar, M.

1996-02-01

We present results from the first detailed geological transect across the Mongolian Western Altai using modern methods of structural geology and fault kinematic analysis. Our purpose was to document the structures responsible for Cenozoic uplift of the range in order to better understand processes of intracontinental mountain building. Historical right-lateral strike-slip and oblique-slip earthquakes have previously been documented from the Western Altai, and many mountain fronts are marked by active fault scarps indicating current tectonic activity and uplift. The dominant structures in the range are long (>200 km) NNW trending right-lateral strike-slip faults. Our transect can be divided into three separate domains that contain active, right-lateral strike-slip master faults and thrust faults with opposing vergence. The current deformation regime is thus transpressional. Each domain has an asymmetric flower structure cross-sectional geometry, and the transect as a whole is interpreted as three separate large flower structures. The mechanism of uplift along the transect appears to be horizontal and vertical growth of flower structures rooted into the dominant right-lateral strike-slip faults. The major Bulgan Fault forms the southern structural boundary to the range and is a 3.5-km-wide brittle-ductile zone that has accommodated reverse and left-lateral strike-slip displacements. It appears to be linked to the North Gobi Fault Zone to the east and Irtysh Fault zone to the west and thus may be over 900 km in length. Two major ductile left-lateral extensional shear zones were identified in the interior of the range that appear to be preserved structures related to a regional Paleozoic or Mesozoic extensional event. Basement rocks along the transect are dominantly metavolcanic, metasedimentary, or intrusive units probably representing a Paleozoic accretionary prism and arc complex. The extent to which Cenozoic uplift has been accommodated by reactivation of older structures and inversion of older basins is unknown and will require further study. As previously suggested by others, Cenozoic uplift of the Altai is interpreted to be due to NE-SW directed compressional stress resulting from the Indo-Eurasian collision 2500 km to the south.

Totally laparoscopic pylorus-preserving gastrectomy for early gastric cancer in the middle stomach: technical report and surgical outcomes.

PubMed

Kumagai, Koshi; Hiki, Naoki; Nunobe, Souya; Sekikawa, Sayuri; Chiba, Takehiro; Kiyokawa, Takashi; Jiang, Xiaohua; Tanimura, Shinya; Sano, Takeshi; Yamaguchi, Toshiharu

2015-01-01

The feasibility, safety, and improved quality of postoperative life following laparoscopy-assisted pylorus-preserving gastrectomy (LAPPG) with a hand-sewn anastomosis via a mini-laparotomy for early gastric cancer (EGC) have been previously established. Here we describe the surgical procedure of totally laparoscopic pylorus-preserving gastrectomy (TLPPG) using an intracorporeal delta-shaped anastomosis technique, and the short-term surgical outcomes of 60 patients with EGC in the middle stomach are reported. After lymphadenectomy and mobilization of the stomach, intraoperative gastroscopy was performed in order to verify the location of the tumor, and then the distal and proximal transecting lines were established, 5 cm from the pyloric ring and just proximal to Demel's line, respectively. Following transection of the stomach, a delta-shaped intracorporeal gastrogastrostomy was made with linear staplers. There were no intraoperative complications or conversions to open surgery. Mean operation time and blood loss were 259 min and 28 mL, respectively. Twelve patients (20.0%) experienced postoperative complications classified as grade II using the Clavien-Dindo classification, with the most frequent complication being gastric stasis (6 cases, 10.0 %). The incidence of severe complications classified as grade III or above was 1.7%; only one patient required reoperation and intensive care due to postoperative intraabdominal bleeding and subsequent multiple organ failure. TLPPG with an intracorporeal delta-shaped anastomosis was found to be a safe procedure, although it tended to require a longer operating time than the well-established LAPPG with a hand-sewn gastrogastrostomy.

Possible return of Acropora cervicornis at Pulaski Shoal, Dry Tortugas National Park, Florida

USGS Publications Warehouse

Lidz, Barbara H.; Zawada, David G.

2013-01-01

Seabed classification is essential to assessing environmental associations and physical status in coral reef ecosystems. At Pulaski Shoal in Dry Tortugas National Park, Florida, nearly continuous underwater-image coverage was acquired in 15.5 hours in 2009 along 70.2 km of transect lines spanning ~0.2 km2. The Along-Track Reef-Imaging System (ATRIS), a boat-based, high-speed, digital imaging system, was used. ATRIS-derived benthic classes were merged with a QuickBird satellite image to create a habitat map that defines areas of senile coral reef, carbonate sand, seagrasses, and coral rubble. This atypical approach of starting with extensive, high-resolution in situ imagery and extrapolating between transect lines using satellite imagery leverages the strengths of each remote-sensing modality. The ATRIS images also captured the spatial distribution of two species once common on now-degraded Florida-Caribbean coral reefs: the stony staghorn coral Acropora cervicornis, a designated threatened species, and the long-spined urchin Diadema antillarum. This article documents the utility of ATRIS imagery for quantifying number and estimating age of A. cervicornis colonies (n = 400, age range, 5–11 y) since the severe hypothermic die-off in the Dry Tortugas in 1976–77. This study is also the first to document the largest number of new colonies of A. cervicornis tabulated in an area of the park where coral-monitoring stations maintained by the Fish and Wildlife Research Institute have not been established. The elevated numbers provide an updated baseline for tracking revival of this species at Pulaski Shoal.

Organic Wastewater Compounds, Pharmaceuticals, andColiphage in Ground Water Receiving Discharge from OnsiteWastewater Treatment Systems near La Pine, Oregon:Occurrence and Implications for Transport

USGS Publications Warehouse

Hinkle, Stephen J.; Weick, Rodney J.; Johnson, Jill M.; Cahill, Jeffery D.; Smith, Steven G.; Rich, Barbara J.

2005-01-01

The occurrence of organic wastewater compounds (components of 'personal care products' and other common household chemicals), pharmaceuticals (human prescription and nonprescription medical drugs), and coliphage (viruses that infect coliform bacteria, and found in high concentrations in municipal wastewater) in onsite wastewater (septic tank effluent) and in a shallow, unconfined, sandy aquifer that serves as the primary source of drinking water for most residents near La Pine, Oregon, was documented. Samples from two types of observation networks provided basic occurrence data for onsite wastewater and downgradient ground water. One observation network was a group of 28 traditional and innovative (advanced treatment) onsite wastewater treatment systems and associated downgradient drainfield monitoring wells, referred to as the 'innovative systems network'. The drainfield monitoring wells were located adjacent to or under onsite wastewater treatment system drainfield lines. Another observation network, termed the 'transect network', consisted of 31 wells distributed among three transects of temporary, stainless-steel-screened, direct-push monitoring wells installed along three plumes of onsite wastewater. The transect network, by virtue of its design, also provided a basis for increased understanding of the transport of analytes in natural systems. Coliphage were frequently detected in onsite wastewater. Coliphage concentrations in onsite wastewater were highly variable, ranging from less than 1 to 3,000,000 plaque forming units per 100 milliliters. Coliphage were occasionally detected (eight occurrences) at low concentrations in samples from wells located downgradient from onsite wastewater treatment system drainfield lines. However, coliphage concentrations were below method detection limits in replicate or repeat samples collected from the eight sites. The consistent absence of coliphage detections in the replicate or repeat samples is interpreted to indicate that the detections reported for ground-water samples represented low-level field or laboratory contamination, and it would appear that coliphage were effectively attenuated to less than 1 PFU/100 mL over distances of several feet of transport in the La Pine aquifer and (or) overlying unsaturated zone. Organic wastewater compounds were frequently detected in onsite wastewater. Of the 63 organic wastewater compounds in the analytical schedule, 45 were detected in the 21 samples of onsite wastewater. Concentrations of organic wastewater compounds reached a maximum of 1,300 ug/L (p-cresol). Caffeine was detected at concentrations as high as 320 ug/L. Fourteen of the 45 compounds were detected in more than 90 percent of onsite wastewater samples. Fewer (nine) organic wastewater compounds were detected in ground water, despite the presence of nitrate and chloride likely from onsite wastewater sources. The nine organic wastewater compounds that were detected in ground-water samples were acetyl-hexamethyl-tetrahydro-naphthalene (AHTN), caffeine, cholesterol, hexahydrohexamethyl-cyclopentabenzopyran, N,N-diethyl-meta-toluamide (DEET), tetrachloroethene, tris (2-chloroethyl) phosphate, tris (dichloroisopropyl) phosphate, and tributyl phosphate. Frequent detection of household-chemical type organic wastewater compounds in onsite wastewater provides evidence that some of these organic wastewater compounds may be useful indicators of human waste effluent dispersal in some hydrologic environments. The occurrence of organic wastewater compounds in ground water downgradient from onsite wastewater treatment systems demonstrates that a subgroup of organic wastewater compounds is transported in the La Pine aquifer. The consistently low concentrations (generally less than 1 ug/L) of organic wastewater compounds in water samples collected from wells located no more than 19 feet from drainfield lines indicates that the reactivity (sorption, degradation) of this suite of organic waste

Effect of luminal contents on postresectional longitudinal and mucosal growth in the ileum of suckling rats.

PubMed

Ford, W D; de Vries, J E; Ross, J S; Malt, R A

1985-11-01

Effects of luminal contents on adaptive growth of the ileum in the neonatal small bowel of rats were examined after resection of the proximal small bowel and after removal of the ileum from the enteric stream. Four weeks after resection of the proximal 60% of the small bowel in 10-day-old rats, the distal 40% of the small bowel elongated by 281%. This distal segment also elongated by 265% after intestinal transection (p greater than 0.05), but by only 191% when it was bypassed (bypass versus resection or transection, p less than 0.001). After resection the distal villi were 81% taller, but after transection they were only 19% taller (p less than 0.001 versus resection); after bypass they did not grow (p less than 0.001 versus resection or transection). The distal crypts were 404% deeper after resection, 331% deeper after transection (p less than 0.05), and 291% deeper after bypass (p less than 0.001 versus resection, p greater than 0.05 versus transection). The DNA content was 517% greater after resection, 364% greater after transection (p less than 0.001), and 73% greater after bypass (p less than 0.001 versus transection or resection). Maximal elongation of the small bowel occurs in the presence of luminal nutrition. Increasing luminal nutrition is associated with increasing mucosal hyperplasia.

Shrinkage of ipsilateral taste buds and hyperplasia of contralateral taste buds following chorda tympani nerve transection.

PubMed

Li, Yi-Ke; Yang, Juan-Mei; Huang, Yi-Bo; Ren, Dong-Dong; Chi, Fang-Lu

2015-06-01

The morphological changes that occur in the taste buds after denervation are not well understood in rats, especially in the contralateral tongue epithelium. In this study, we investigated the time course of morphological changes in the taste buds following unilateral nerve transection. The role of the trigeminal component of the lingual nerve in maintaining the structural integrity of the taste buds was also examined. Twenty-four Sprague-Dawley rats were randomly divided into three groups: control, unilateral chorda tympani nerve transection and unilateral chorda tympani nerve transection + lingual nerve transection. Rats were allowed up to 42 days of recovery before being euthanized. The taste buds were visualized using a cytokeratin 8 antibody. Taste bud counts, volumes and taste receptor cell numbers were quantified and compared among groups. No significant difference was detected between the chorda tympani nerve transection and chorda tympani nerve transection + lingual nerve transection groups. Taste bud counts, volumes and taste receptor cell numbers on the ipsilateral side all decreased significantly compared with control. On the contralateral side, the number of taste buds remained unchanged over time, but they were larger, and taste receptor cells were more numerous postoperatively. There was no evidence for a role of the trigeminal branch of the lingual nerve in maintaining the structural integrity of the anterior taste buds.

Neuroprotective effects of (-)-epigallocatechin-3-gallate (EGCG) against peripheral nerve transection-induced apoptosis.

PubMed

Kian, Kosar; Khalatbary, Ali Reza; Ahmadvand, Hassan; Karimpour Malekshah, Abbasali; Shams, Zahra

2018-01-02

Recent studies revealed the neuroprotective effects of epigallocatechin-3-gallate (EGCG) on a variety of neural injury models. The purpose of this study was to determine the neuroprotective effects of EGCG following sciatic nerve transection (SNT). Rats were randomly divided into four groups each as follows: Sham-operated group, SNT group, and Pre-EGCG (50-mg/kg, i.p., 30 minutes before nerve transection and followed for 3 days) and Post-EGCG (50-mg/kg, i.p., 1 hour after nerve transection and followed for 3 days) groups. Spinal cord segments of the sciatic nerve and related dorsal root ganglions were removed four weeks after nerve transection for the assessment of malondialdehyde (MDA) levels, superoxide dismutase (SOD) and catalase (CAT) activities, immunohistochemistry of caspase-3, cyclooxygenase-2 (COX-2), S100beta (S100B), and terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL). MDA levels were significantly decreased, and SOD and CAT activities were significantly increased in EGCG-treated rats after nerve transection. Attenuated caspase-3 and COX-2 expression, and TUNEL reaction could be significantly detected in the EGCG-treated rats after nerve transection. Also, EGCG significantly increased S100B expression. We propose that EGCG may be effective in the protection of neuronal cells against retrograde apoptosis and may enhance neuronal survival time following nerve transection.

Hydrogeology and leachate plume delineation at a closed municipal landfill, Norman, Oklahoma

USGS Publications Warehouse

Becker, Carol J.

2002-01-01

The City of Norman operated a solid-waste municipal landfill at two sites on the Canadian River alluvium in Cleveland County, Oklahoma from 1970 to 1985. The sites, referred to as the west and east cells of the landfill, were originally excavations in the unconsolidated alluvial deposits and were not lined. Analysis of ground-water samples indicate that leachate from the west cell is discharging into an adjacent abandoned river channel, referred to as the slough, and is migrating downgradient in ground water toward the Canadian River. The report describes the hydrogeologic features at the landfill, including the topography of the bedrock, water-level changes in the alluvial aquifer, and delineates the leachate plume using specific conductance data. The leading edge of the leachate plume along the 35-80 transect extended over 250 meters downgradient of the west cell. The leading edge of the leachate plume along the 40-SOUTH transect had moved about 60 meters from the west cell in a south-southwesterly direction and had not moved past the slough as of 1997. Specific conductance measurements exceeding 7,000 microsiemens per centimeter at site 40 indicate the most concentrated part of the plume remained in the upper half of the alluvial aquifer adjacent to the west cell. The direction of ground-water flow in the alluvial aquifer surrounding the landfill was generally north-northeast to south-southwest toward the river. However, between the west cell and the slough along the 40-SOUTH transect, head measurements indicate a directional change to the east and southeast toward a channel referred to as the sewage outfall. Near the 35-80 transect, at 0.5 meter below the water table and at the base of the aquifer, the direction of ground-water flow was south-southeast with a gradient of about 30 centimeters per 100 meters. Generally, ground-water levels in the alluvial aquifer were higher during the winter months and lower during summer months, due to a normal decrease in precipitation and increased evapotranspiration in the summer. Hydrographs show temporal water-level changes in ground water and the slough, indicating a hydrologic connection between the alluvial aquifer and the slough.

Temperature Inversions and Permafrost Distribution in a Mountain Valley: Preliminary Results From Wolf Creek, Yukon Territory, Canada

NASA Astrophysics Data System (ADS)

Lewkowicz, A. G.; Smith, K. M.

2004-12-01

The BTS (Basal Temperature of Snow) method to predict permafrost probability in mountain basins uses elevation as an easily available and spatially distributed independent variable. The elevation coefficient in the BTS regression model is, in effect, a substitute for ground temperature lapse rates. Previous work in Wolf Creek (60° 8'N 135° W), a mountain basin near Whitehorse, has shown that the model breaks down in a mid-elevation valley (1250 m asl) where actual permafrost probability is roughly twice that predicted by the model (60% vs. 20-30%). The existence of a double tree-line at the site suggested that air temperature inversions might be the cause of this inaccuracy (Lewkowicz and Ednie, 2004). This paper reports on a first year (08/2003-08/2004) of hourly air and ground temperature data collected along an altitudinal transect within the valley in upper Wolf Creek. Measurements were made at sites located 4, 8, 22, 82 and 162 m above the valley floor. Air temperature inversions between the lowest and highest measurement points occurred 42% of the time and in all months, but were most frequent and intense in winter (>60% of December and January) and least frequent in September (<25% of time). They generally developed after sunset and reached a maximum amplitude before sunrise. Only 11 inversions that lasted through more than one day occurred during the year, and only from October to February. The longest continuous duration was 145 h while the greatest inversion magnitude measured over the 160 m transect was 19° C. Ground surface temperatures are more difficult to interpret because of differences in soils and vegetation cover along the transect and the effects of seasonal snow cover. In many cases, however, air temperature inversions are not duplicated in the ground temperature record. Nevertheless, the annual altitudinal ground temperature gradient is much lower than would be expected from a standard atmospheric lapse rate, suggesting that the inversions do have an important impact on permafrost distribution at this site. More generally, therefore, it appears probable that any reduction in inversion frequency resulting from a more vigorous atmospheric circulation in the context of future climate change, would have a significant effect on permafrost distribution in mountain basins.

Attenuation of TRPV1 by AMG-517 after nerve injury promotes peripheral axonal regeneration in rats.

PubMed

Bai, Juan; Liu, Fu; Wu, Li-Fei; Wang, Ya-Fang; Li, Xia-Qing

2018-01-01

Aims The main objective was to investigate the effects of the transient receptor potential cation channel subfamily V member 1 (TRPV1) on nerve regeneration following sciatic transection injury by functional blockage of TRPV1 using AMG-517, a specific blocker of TRPV1. Methods AMG-517 was injected into the area surrounding ipsilateral lumbar dorsal root ganglia 30 min after unilateral sciatic nerve transection. The number of sciatic axons and the expression of growth-associated protein-43 (GAP-43) and glial fibrillary acidic protein was examined using semithin sections, Western blot, and immunofluorescence analyses. Results Blockage of TRPV1 with AMG-517 markedly promoted axonal regeneration, especially at two weeks after sciatic injury; the number of axons was similar to the uninjured control group. After sciatic nerve transection, expression of glial fibrillary acidic protein was decreased and GAP-43 was increased at the proximal stump. However, the expression of both glial fibrillary acidic protein and GAP-43 increased significantly in AMG-517-treated groups. Conclusions TRPV1 may be an important therapeutic target to promote peripheral nerve regeneration after injury.

Forest Soil Disturbance Monitoring Protocol: Volume II: Supplementary methods, statistics, and data collection

Treesearch

Deborah S. Page-Dumroese; Ann M. Abbott; Thomas M. Rice

2009-01-01

Volume I and volume II of the Forest Soil Disturbance Monitoring Protocol (FSDMP) provide information for a wide range of users, including technicians, field crew leaders, private landowners, land managers, forest professionals, and researchers. Volume I: Rapid Assessment includes the basic methods for establishing forest soil monitoring transects and consistently...

New methods for sampling sparse populations

Treesearch

Anna Ringvall

2007-01-01

To improve surveys of sparse objects, methods that use auxiliary information have been suggested. Guided transect sampling uses prior information, e.g., from aerial photographs, for the layout of survey strips. Instead of being laid out straight, the strips will wind between potentially more interesting areas. 3P sampling (probability proportional to prediction) uses...

Differential Responses of Soleus and Plantaris Muscle Fibers to Overloading

NASA Astrophysics Data System (ADS)

Kawano, Fuminori; Shibaguchi, Tsubasa; Ohira, Takashi; Nakai, Naoya; Ohira, Yoshinobu

2013-02-01

Responses of slow and fast fibers in soleus and plantaris muscles of adult rats to overloading by the tendon transection of synergists were studied. Overloading-related hypertrophy was noted in the slow fibers of plantaris and soleus, although the magnitude was greater in plantaris. Five genes with minor expression in slow soleus muscle were identified by microarray analysis. Base-line expressions of these genes in slow fibers of plantaris were also low. Further, repressive effects of overloading on these genes were seen in some fast fibers of plantaris, not in whole plantaris and soleus. The data suggested that the repression of particular genes might be related to the pronounced morphological response of fibers expressing type II, including I+II, myosin heavy chain (MyHC), although these genes with lower base-line expression in slow fibers did not respond to overloading.

Elevation-dependent changes in n-alkane δD and soil GDGTs across the South Central Andes

NASA Astrophysics Data System (ADS)

Nieto-Moreno, Vanesa; Rohrmann, Alexander; van der Meer, Marcel T. J.; Sinninghe Damsté, Jaap S.; Sachse, Dirk; Tofelde, Stefanie; Niedermeyer, Eva M.; Strecker, Manfred R.; Mulch, Andreas

2016-11-01

Surface uplift of large plateaus may significantly influence regional climate and more specifically precipitation patterns and temperature, sometimes complicating paleoaltimetry interpretations. Thus, understanding the topographic evolution of tectonically active mountain belts benefits from continued development of reliable proxies to reduce uncertainties in paleoaltimetry reconstructions. Lipid biomarker-based proxies provide a novel approach to stable isotope paleoaltimetry and complement authigenic or pedogenic mineral proxy materials, in particular outside semi-arid climate zones where soil carbonates are not abundant but (soil) organic matter has a high preservation potential. Here we present δD values of soil-derived n-alkanes and mean annual air temperature (MAT) estimates based on branched glycerol dialkyl glycerol tetraether (brGDGT) distributions to assess their potential for paleoelevation reconstructions in the southern central Andes. We analyzed soil samples across two environmental and hydrological gradients that include a hillslope (26-28°S) and a valley (22-24°S) transect on the windward flanks of Central Andean Eastern Cordillera in NW Argentina. Our results show that present-day n-alkane δD values and brGDGT-based MAT estimates are both linearly related with elevation and in good agreement with present-day climate conditions. Soil n-alkanes show a δD lapse rate (Δ (δD)) of - 1.64 ‰ / 100 m (R2 = 0.91, p < 0.01) at the hillslope transect, within the range of δD lapse rates from precipitation and surface waters in other tropical regions in the Andes like the Eastern Cordillera in Colombia and Bolivia and the Equatorial and Peruvian Andes. BrGDGT-derived soil temperatures are similar to monitored winter temperatures in the region and show a lapse rate of ΔT = - 0.51 °C / 100 m (R2 = 0.91, p < 0.01), comparable with lapse rates from in situ soil temperature measurements, satellite-derived land-surface temperatures at this transect, and weather stations from the Eastern Cordillera at similar latitude. As a result of an increasing leeward sampling position along the valley transect lapse rates are biased towards lower values and display higher scatter (Δ (δD) = - 0.95 ‰ / 100 m, R2 = 0.76, p < 0.01 and ΔT = - 0.19 °C / 100 m, R2 = 0.48, p < 0.05). Despite this higher complexity, they are in line with lapse rates from stream-water samples and in situ soil temperature measurements along the same transect. Our results demonstrate that both soil n-alkane δD values and MAT reconstructions based on brGDGTs distributions from the hillslope transect (Δ (δD) = - 1.64 ‰ / 100 m, R2 = 0.91, p < 0.01 and ΔT = - 0.51 °C / 100 m, R2 = 0.91, p < 0.01) track the direct effects of orography on precipitation and temperature and hence the combined effects of local and regional hydrology as well as elevation.

Relative spatial soil geochemical variability along two transects across the United States and Canada

USGS Publications Warehouse

Garrett, Robert G.

2009-01-01

The patterns of relative variability differ by transect and horizon. The N–S transect A-horizon soils show significant between-40-km scale variability for 29 elements, with only 4 elements (Ca, Mg, Pb and Sr) showing in excess of 50% of their variability at the within-40-km and ‘at-site’ scales. In contrast, the C-horizon data demonstrate significant between-40-km scale variability for 26 elements, with 21 having in excess of 50% of their variability at the within-40-km and ‘at-site’ scales. In 36 instances, the ‘at-site’ variability is statistically significant in terms of the sample preparation and analysis variability. It is postulated that this contrast between the A- and C- horizons along the N–S transect, that is dominated by agricultural land uses, is due to the local homogenization of Ap-horizon soils by tillage reducing the ‘at-site’ variability. The spatial variability is distributed similarly between scales for the A- and C-horizon soils of the E–W transect. For all elements, there is significant variability at the within-40-km scale. Notwithstanding this, there is significant between-40-km variability for 28 and 20 of the elements in the A- and C-horizon data, respectively. The differences between the two transects are attributed to (1) geology, the N–S transect runs generally parallel to regional strikes, whereas the E–W transect runs across regional structures and lithologies; and (2) land use, with agricultural tillage dominating along the N–S transect. The spatial analysis of the transect data indicates that continental-scale maps demonstrating statistically significant patterns of geochemical variability may be prepared for many elements from data on soil samples collected on a 40 x 40 km grid or similar sampling designs resulting in a sample density of 1 site per 1600 km2.

Hypothalamic network for thermoregulatory shivering.

PubMed

Kanosue, K; Zhang, Y H; Yanase-Fujiwara, M; Hosono, T

1994-07-01

Warming one side of a rat's preoptic area and anterior hypothalamus (POAH) suppresses shivering on both sides of the body, and the present study evaluated the extent to which signals mediating this suppression cross the midline within and below the POAH. Hind paw shivering during unilateral POAH thermal stimulation was measured for rats in which the POAH had been midsagittally transected and for rats in which one side of the hypothalamus had been coronally transected just caudal to the POAH. In midsagittally transected rats, unilateral warming on either side of the POAH suppressed shivering equally on both sides of the body. In unilaterally transected rats, POAH warming on the transected side did not affect shivering, but warming the intact side suppressed shivering equally on both sides of the body. When a unilateral transection of only the lateral part of the hypothalamus included the medial forebrain bundle, the effect was the same as that of a unilateral transection of the whole hypothalamus. These results indicate that no information controlling shivering is exchanged between the left and right POAH and that efferent signals from the POAH, descending through the medial forebrain bundle, cross the midline somewhere below the hypothalamus to innervate both sides of the body equally.

Effects of fire on composition, biomass, and nutrients in oak scrub vegetation on John F. Kennedy Space Center, Florida

NASA Technical Reports Server (NTRS)

Schmalzer, Paul A.; Hinkle, C. Ross

1987-01-01

Four stands of oak scrub two, four, eight, and 25 years since fire were sampled with permanent 15 m line transects. Percent cover by species was determined. Plant samples were analyzed for a variety of substances. Transects were resurveyed in 1985 for vegetation parameters. Nutrient pools in biomass were calculated from biomass data and tissue nutrient concentrations. Soil nutrient pools were calculated from nutrient concentrations and bulk density. Species distribution and soil chemical properties were found to be closely related to water table depth. The following fire-related conclusions are reached: (1) major structural changes occur in scrub after fire in that shrub height is reduced and requires four to six years to exceed 1 m; (2) reduction in shrub height affects the suitability of scrub for the Florida scrub jay (3) live biomass increases with time since fire; (4) nutrient concentrations in live biomass do not change with time since fire; (5) species composition and richness are little changed after fire; and (6) imposition of a continued regime of burning on a three-year cycle may have adverse impacts not indicated by the recovery of scrub from a single fire.

Everglades Depth Estimation Network (EDEN) Applications: Tools to View, Extract, Plot, and Manipulate EDEN Data

USGS Publications Warehouse

Telis, Pamela A.; Henkel, Heather

2009-01-01

The Everglades Depth Estimation Network (EDEN) is an integrated system of real-time water-level monitoring, ground-elevation data, and water-surface elevation modeling to provide scientists and water managers with current on-line water-depth information for the entire freshwater part of the greater Everglades. To assist users in applying the EDEN data to their particular needs, a series of five EDEN tools, or applications (EDENapps), were developed. Using EDEN's tools, scientists can view the EDEN datasets of daily water-level and ground elevations, compute and view daily water depth and hydroperiod surfaces, extract data for user-specified locations, plot transects of water level, and animate water-level transects over time. Also, users can retrieve data from the EDEN datasets for analysis and display in other analysis software programs. As scientists and managers attempt to restore the natural volume, timing, and distribution of sheetflow in the wetlands, such information is invaluable. Information analyzed and presented with these tools is used to advise policy makers, planners, and decision makers of the potential effects of water management and restoration scenarios on the natural resources of the Everglades.

Electronic bypass of spinal lesions: activation of lower motor neurons directly driven by cortical neural signals.

PubMed

Li, Yan; Alam, Monzurul; Guo, Shanshan; Ting, K H; He, Jufang

2014-07-03

Lower motor neurons in the spinal cord lose supraspinal inputs after complete spinal cord injury, leading to a loss of volitional control below the injury site. Extensive locomotor training with spinal cord stimulation can restore locomotion function after spinal cord injury in humans and animals. However, this locomotion is non-voluntary, meaning that subjects cannot control stimulation via their natural "intent". A recent study demonstrated an advanced system that triggers a stimulator using forelimb stepping electromyographic patterns to restore quadrupedal walking in rats with spinal cord transection. However, this indirect source of "intent" may mean that other non-stepping forelimb activities may false-trigger the spinal stimulator and thus produce unwanted hindlimb movements. We hypothesized that there are distinguishable neural activities in the primary motor cortex during treadmill walking, even after low-thoracic spinal transection in adult guinea pigs. We developed an electronic spinal bridge, called "Motolink", which detects these neural patterns and triggers a "spinal" stimulator for hindlimb movement. This hardware can be head-mounted or carried in a backpack. Neural data were processed in real-time and transmitted to a computer for analysis by an embedded processor. Off-line neural spike analysis was conducted to calculate and preset the spike threshold for "Motolink" hardware. We identified correlated activities of primary motor cortex neurons during treadmill walking of guinea pigs with spinal cord transection. These neural activities were used to predict the kinematic states of the animals. The appropriate selection of spike threshold value enabled the "Motolink" system to detect the neural "intent" of walking, which triggered electrical stimulation of the spinal cord and induced stepping-like hindlimb movements. We present a direct cortical "intent"-driven electronic spinal bridge to restore hindlimb locomotion after complete spinal cord injury.

Parsivel Disdrometer Support for MAGIC Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kollias, Pavlos; Bartholomew, Mary Jane

2016-06-01

In the Marine ARM GPCI Investigation of Clouds (MAGIC) field campaign, the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) Climate Research Facility’s second Mobile Facility (AMF2) was deployed on the Horizon Lines cargo ship Spirit traversing a route between Los Angeles, California and Honolulu, Hawaii for one full year. The transect for this deployment was chosen specifically because it crosses the stratocumulus-to-cumulus transition of the North-East Pacific, a region of great climatic interest and a close approximation to the transect used for several focused model intercomparison efforts. The cloud type and cover along this transect vary from lowmore » marine stratocumulus with high areal coverage near the California coast to isolated shallow cumulus with much lower areal coverage in the trade wind regime near Hawaii. The low marine stratocumulus decks, with their high albedo, exert a major influence on the shortwave radiation budget in the ocean environment, and thus provide an extremely important forcing of Earth’s climate. The trade cumulus clouds play a large role in the global surface evaporation and also in Earth’s albedo. One of the important science drivers of the MAGIC campaign was to measure the properties of clouds and precipitation, specifically cloud type, fractional coverage, base height, physical thickness, liquid water path (LWP), optical depth, and drizzle and precipitation frequency, amount, and extent. Retrievals of cloud and precipitation properties during the MAGIC campaign relied critically on the calibration of the AMF2 radar systems. For MAGIC this included the KAZR and M-WACR, both fixed zenith-pointing systems, and the 1290 MHz beam steerable wind profiler.« less

Single-Incision Laparoscopic Anterior Resection Using a Curved Stapler.

PubMed

Watanabe, Jun; Ota, Mitsuyoshi; Suwa, Yusuke; Ishibe, Atsushi; Masui, Hidenobu; Nagahori, Kaoru

2016-11-01

Single-incision laparoscopic colectomy is technically limited because of such factors as instrument crowding, in-line viewing, and insufficient countertraction. In particular, it is technically difficult to cut the distal rectum from the umbilicus using an articulating linear stapler in single-incision laparoscopic anterior resection. After treating the mesorectum, the 5-mm trocar is replaced with a 12-mm trocar. The cartridge of the curved stapler is mounted while the shaft of the stapler is inserted into the 12-mm port extracorporeally. The curved stapler is inserted through the umbilical incision with the cartridge. A multichannel port is then mounted, and the abdominal cavity is reinsufflated. The curved stapler can then be operated intracorporeally. This procedure facilitates the vertical dissection of the rectum from the umbilicus. A total of 27 consecutive patients were analyzed in this study. All the procedures were safely performed without any complications. The median distance from the peritoneal reflection to the transection point of the distal bowel in single-incision laparoscopic anterior resection was 5.0 cm (range, -2.0 to 15.0). One stapler firing was required to achieve distal bowel division in 26 patients (96.3 %), whereas 2 firings were required in 1 patient (3.7 %). The median distal margin was 7.0 cm (range, 3.0-13.0). The time from the insertion of the stapler to transection was 180 seconds (range, 100-420). There were no cases of anastomotic leakage. In single-incision laparoscopic anterior resection, it is feasible to perform rectal transection from the umbilicus by using a curved stapler. This technique may allow for the omission of 1 trocar from the operation.

Complex thrusting at the toe of the Nankai accretionary prism, NanTroSEIZE Kumano transect

NASA Astrophysics Data System (ADS)

Moore, G. F.; Park, J.; Kodaira, S.; Kaneda, Y.

2009-12-01

Seismic reflection data collected over the past 10 years by the Institute for Research on Earth Evolution (IFREE) of Japan Agency for Marine Earth Science and Technology (JAMSTEC) image a zone of complex thrusting at the toe of the Nankai accretionary prism south of Kii Peninsula, Honshu, Japan. The frontal part of the Nankai prism west of Shionomisaki Canyon (SC) at ~136° E, including the Muroto and Ashizuri Transects off Shikoku, is generally formed of imbricate thrusts with spacing of ~ 1-3 km that dip ~25-35° landward and sole into a prominent décollement. Out-of-sequence thrusts (OOSTs) are usually restricted to the landward margin of this imbricate thrust zone. East of SC, in the Kumano Transect area, the imbricate thrust zone is bounded on its seaward edge by a frontal thrust block that is ~5-6 km wide and consists of several OOSTs. The frontal thrust dips ~5-10° under this ~2-4 km thick block, emplacing this thrust sheet over the trench floor. The number and character of thrusts within the frontal thrust block vary laterally along strike. The 2006 Kumano 3D seismic data set images details of one segment of this complex frontal thrust block. Out-of-sequence faulting has led to underplating of several smaller thrust slices and movement along oblique ramps has led to a complex pattern of faulting that cannot be recognized in even closely-spaced 2D seismic lines. The frontal thrust block is further modified by subduction of seamounts and ridges that have caused large slumps of material from the block.

Mucocele of the cystic duct remnant after orthotopic liver transplant: a problem revisited.

PubMed

Chatterjee, Suvadip; Das, Debasish; Hudson, Mark; Bassendine, Margaret Fiona; Scott, John; Oppong, Kofi Ernest; Sen, Gourab; French, Jeremy J

2011-06-01

Mucocele of the cystic duct remnant is an uncommon hepatobiliary complication of a liver transplant. Current practice usually involves either excising the cystic duct, or incorporating the distal end of the transected cystic duct into the suture line of the biliary anastomosis to ensure drainage. We report a patient who developed cystic duct remnant mucocele after the latter approach was adopted. We believe that this is likely related to delayed anastomotic stricturing, which prevented draining from the remnant cystic duct. We also discuss the incidence, pathology, investigations, and treatment of this condition.

COMPARISON OF USEPA FIELD SAMPLING METHODS FOR BENTHIC MACROINVERTEBRATE STUDIES

EPA Science Inventory

Two U.S. Environmental Protection Agency (USEPA) macroinvertebrate sampling protocols were compared in the Mid-Atlantic Highlands region. The Environmental Monitoring and Assessment Program (EMAP) wadeable streams protocol results in a single composite sample from nine transects...

Quantitative Characterization of Spurious Gibbs Waves in 45 CMIP5 Models

NASA Astrophysics Data System (ADS)

Geil, K. L.; Zeng, X.

2014-12-01

Gibbs oscillations appear in global climate models when representing fields, such as orography, that contain discontinuities or sharp gradients. It has been known for decades that the oscillations are associated with the transformation of the truncated spectral representation of a field to physical space and that the oscillations can also be present in global models that do not use spectral methods. The spurious oscillations are potentially detrimental to model simulations (e.g., over ocean) and this work provides a quantitative characterization of the Gibbs oscillations that appear across the Coupled Model Intercomparison Project Phase 5 (CMIP5) models. An ocean transect running through the South Pacific High toward the Andes is used to characterize the oscillations in ten different variables. These oscillations are found to be stationary and hence are not caused by (physical) waves in the atmosphere. We quantify the oscillation amplitude using the root mean square difference (RMSD) between the transect of a variable and its running mean (rather than the constant mean across the transect). We also compute the RMSD to interannual variability (IAV) ratio, which provides a relative measure of the oscillation amplitude. Of the variables examined, the largest RMSD values exist in the surface pressure field of spectral models, while the smallest RMSD values within the surface pressure field come from models that use finite difference (FD) techniques. Many spectral models have a surface pressure RMSD that is 2 to 15 times greater than IAV over the transect and an RMSD:IAV ratio greater than one for many other variables including surface temperature, incoming shortwave radiation at the surface, incoming longwave radiation at the surface, and total cloud fraction. In general, the FD models out-perform the spectral models, but not all the spectral models have large amplitude oscillations and there are a few FD models where the oscillations do appear. Finally, we present a brief comparison of the numerical methods of a select few models to better understand their Gibbs oscillations.

Rapid estimation of recharge potential in ephemeral-stream channels using electromagnetic methods, and measurements of channel and vegetation characteristics

USGS Publications Warehouse

Callegary, J.B.; Leenhouts, J.M.; Paretti, N.V.; Jones, Christopher A.

2007-01-01

To classify recharge potential (RCP) in ephemeral-stream channels, a method was developed that incorporates information about channel geometry, vegetation characteristics, and bed-sediment apparent electrical conductivity (??a). Recharge potential is not independently measurable, but is instead formulated as a site-specific, qualitative parameter. We used data from 259 transects across two ephemeral-stream channels near Sierra Vista, Arizona, a location with a semiarid climate. Seven data types were collected: ??a averaged over two depth intervals (0-3 m, and 0-6 m), channel incision depth and width, diameter-at-breast-height of the largest tree, woody-plant and grass density. A two-tiered system was used to classify a transect's RCP. In the first tier, transects were categorized by estimates of near-surface-sediment hydraulic permeability as low, moderate, or high using measurements of 0-3 m-depth ??a. Each of these categories was subdivided into low, medium, or high RCP classes using the remaining six data types, thus yielding a total of nine RCP designations. Six sites in the study area were used to compare RCP and ??a with previously measured surrogates for hydraulic permeability. Borehole-averaged percent fines showed a moderate correlation with both shallow and deep ??a measurements, however, correlation of point measurements of saturated hydraulic conductivity, percent fines, and cylinder infiltrometer measurements with ??a and RCP was generally poor. The poor correlation was probably caused by the relatively large measurement volume and spatial averaging of ??a compared with the spatially-limited point measurements. Because of the comparatively large spatial extent of measurement transects and variety of data types collected, RCP estimates can give a more complete picture of the major factors affecting recharge at a site than is possible through point or borehole-averaged estimates of hydraulic permeability alone. ?? 2007 Elsevier B.V. All rights reserved.

Transected sciatic nerve repair by diode laser protein soldering.

PubMed

Fekrazad, Reza; Mortezai, Omid; Pedram, MirSepehr; Kalhori, Katayoun Am; Joharchi, Khojasteh; Mansoori, Korosh; Ebrahimi, Roja; Mashhadiabbas, Fatemeh

2017-08-01

Despite advances in microsurgical techniques, repair of peripheral nerve injuries (PNI) is still a major challenge in regenerative medicine. The standard treatment for PNI includes suturing and anasthomosis of the transected nerve. The objective of this study was to compare neurorraphy (nerve repair) using standard suturingto diode laser protein soldering on the functional recovery of transected sciatic nerves. Thirty adult male Fischer-344 Wistar rats were randomly assigned to 3 groups: 1. The control group, no repair, 2. the standard of care suture group, and 3. The laser/protein solder group. For all three groups, the sciatic nerve was transected and the repair was done immediately. For the suture repair group, 10.0 prolene suture was used and for the laser/protein solder group a diode laser (500mW output power) in combination with bovine serum albumen and indocyanine green dye was used. Behavioral assessment by sciatic functional index was done on all rats biweekly. At 12weeks post-surgery, EMG recordings were done on all the rats and the rats were euthanized for histological evaluation of the sciatic nerves. The one-way ANOVA test was used for statistical analysis. The average time required to perform the surgery was significantly shorter for the laser-assisted nerve repair group compared to the suture group. The EMG evaluation revealed no difference between the two groups. Based on the sciatic function index the laser group was significantly better than the suture group after 12weeks (p<0.05). Histopathologic evaluation indicated that the epineurium recovery was better in the laser group (p<0.05). There was no difference in the inflammation between the suture and laser groups. Based on this evidence, laser/protein nerve soldering is a more efficient and efficacious method for repair of nerve injury compared to neurorraphy using standard suturing methods. Copyright © 2017 Elsevier B.V. All rights reserved.

Assessment of lesser prairie-chicken lek density relative to landscape characteristics in Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Timmer, Jennifer; Butler, Matthew; Ballard, Warren

My 2.5-yr Master's project accomplished the objectives of estimating lesser prairie-chicken (LPC) lek density and abundance in the Texas occupied range and modeling anthropogenic and landscape features associated with lek density by flying helicopter lek surveys for 2 field seasons and employing a line-transect distance sampling method. This project was important for several reasons. Firstly, wildlife managers and biologists have traditionally monitored LPC populations with road-based surveys that may result in biased estimates and do not provide access to privately-owned or remote property. From my aerial surveys and distance sampling, I was able to provide accurate density and abundance estimates,more » as well as new leks and I detected LPCs outside the occupied range. Secondly, recent research has indicated that energy development has the potential to impact LPCs through avoidance of tall structures, increased mortality from raptors perching on transmission lines, disturbance to nesting hens, and habitat loss/fragmentation. Given the potential wind energy development in the Texas Panhandle, spatial models of current anthropogenic and vegetative features (such as transmission lines, roads, and percent native grassland) influencing lek density were needed. This information provided wildlife managers and wind energy developers in Texas with guidelines for how change in landscape features could impact LPCs. Lastly, LPC populations have faced range-wide declines over the last century and they are currently listed as a candidate species under the Endangered Species Act. I was able to provide timely information on LPC populations in Texas that will be used during the listing process.« less

Use of paper for treatment of a peripheral nerve trauma in the rat.

PubMed

Kauppila, T; Jyväsjärvi, E; Murtomäki, S; Mansikka, H; Pertovaara, A; Virtanen, I; Liesi, P

1997-09-29

Reinnervation of the muscles and skin in the rat hindpaw was studied after transection and attempted repair of the sciatic nerve. Reconnecting the transected nerve with lens cleaning paper was at least as effective in rejoining the transected nerves as traditional microsurgical neurorraphy. Paper induced a slightly bigger fibrous scar around the site of transection than neurorraphy, but this scar did not cause impairment of functional recovery or excessive signs of neuropathic pain. We conclude that a paper graft can be used in restorative surgery of severed peripheral nerves.

The Distribution and Magnitude of Glacial Erosion on 103-year Timescales at Engabreen, Norway

NASA Astrophysics Data System (ADS)

Rand, C.; Goehring, B. M.

2017-12-01

We derive the magnitudes of glacial erosion integrated over 103-year timescales across a transect transverse to the direction of ice flow at Engabreen, Norway. Understanding the distribution of glacial erosion is important for several reasons, including sediment budgeting to fjord environments, development of robust landscape evolution models, and if a better understanding between erosion and ice-bed interface properties (e.g., sliding rate, basal water pressure) can be developed, we can use records of glacial erosion to infer glaciological properties that can ultimately benefit models of past and future glaciers. With few exceptions, measurements of glacial erosion are limited to the historical past and even then are rare owing to the difficulty of accessing the glacier bed. One method proven useful in estimating glacial erosion on 103-year timescales is to measure the remaining concentrations of cosmogenic nuclides that accumulate in exposed bedrock during periods of retracted glacier extent and are removed by glacial erosion and radioactive decay during ice cover. Here we will present measurements of 14C and 10Be measured in proglacial bedrock from Engabreen. Our transects are ca. 600 and 400 meters in front of the modern ice front, and based on historical imagery, was ice covered until the recent past. Initial 10Be results show an increase in concentrations of nearly an order of magnitude from the samples near the center of the glacial trough to those on the lateral margin, consistent with conceptual models of glacial erosion parameterized in terms of sliding velocity. Naïve exposure ages that assume no subglacial erosion range from 0.22 - 9.04 ka. More importantly, we can estimate erosion depths by assuming zero erosion of the highest concentration sample along the two transects and calculate the amount of material removed to yield the lower concentrations elsewhere along the two transects. Results indicate minimum erosion depths of 1-183 cm for most ice proximal transect and 7-56 cm for the more distal one.

On the Ground or in the Air? A Methodological Experiment on Crop Residue Cover Measurement in Ethiopia

NASA Astrophysics Data System (ADS)

Kosmowski, Frédéric; Stevenson, James; Campbell, Jeff; Ambel, Alemayehu; Haile Tsegay, Asmelash

2017-10-01

Maintaining permanent coverage of the soil using crop residues is an important and commonly recommended practice in conservation agriculture. Measuring this practice is an essential step in improving knowledge about the adoption and impact of conservation agriculture. Different data collection methods can be implemented to capture the field level crop residue coverage for a given plot, each with its own implication on survey budget, implementation speed and respondent and interviewer burden. In this paper, six alternative methods of crop residue coverage measurement are tested among the same sample of rural households in Ethiopia. The relative accuracy of these methods are compared against a benchmark, the line-transect method. The alternative methods compared against the benchmark include: (i) interviewee (respondent) estimation; (ii) enumerator estimation visiting the field; (iii) interviewee with visual-aid without visiting the field; (iv) enumerator with visual-aid visiting the field; (v) field picture collected with a drone and analyzed with image-processing methods and (vi) satellite picture of the field analyzed with remote sensing methods. Results of the methodological experiment show that survey-based methods tend to underestimate field residue cover. When quantitative data on cover are needed, the best estimates are provided by visual-aid protocols. For categorical analysis (i.e., >30% cover or not), visual-aid protocols and remote sensing methods perform equally well. Among survey-based methods, the strongest correlates of measurement errors are total farm size, field size, distance, and slope. Results deliver a ranking of measurement options that can inform survey practitioners and researchers.

On the Ground or in the Air? A Methodological Experiment on Crop Residue Cover Measurement in Ethiopia.

PubMed

Kosmowski, Frédéric; Stevenson, James; Campbell, Jeff; Ambel, Alemayehu; Haile Tsegay, Asmelash

2017-10-01

Maintaining permanent coverage of the soil using crop residues is an important and commonly recommended practice in conservation agriculture. Measuring this practice is an essential step in improving knowledge about the adoption and impact of conservation agriculture. Different data collection methods can be implemented to capture the field level crop residue coverage for a given plot, each with its own implication on survey budget, implementation speed and respondent and interviewer burden. In this paper, six alternative methods of crop residue coverage measurement are tested among the same sample of rural households in Ethiopia. The relative accuracy of these methods are compared against a benchmark, the line-transect method. The alternative methods compared against the benchmark include: (i) interviewee (respondent) estimation; (ii) enumerator estimation visiting the field; (iii) interviewee with visual-aid without visiting the field; (iv) enumerator with visual-aid visiting the field; (v) field picture collected with a drone and analyzed with image-processing methods and (vi) satellite picture of the field analyzed with remote sensing methods. Results of the methodological experiment show that survey-based methods tend to underestimate field residue cover. When quantitative data on cover are needed, the best estimates are provided by visual-aid protocols. For categorical analysis (i.e., >30% cover or not), visual-aid protocols and remote sensing methods perform equally well. Among survey-based methods, the strongest correlates of measurement errors are total farm size, field size, distance, and slope. Results deliver a ranking of measurement options that can inform survey practitioners and researchers.

Restoration of motor function after operative reconstruction of the acutely transected spinal cord in the canine model.

PubMed

Liu, Zehan; Ren, Shuai; Fu, Kuang; Wu, Qiong; Wu, Jun; Hou, Liting; Pan, Hong; Sun, Linlin; Zhang, Jian; Wang, Bingjian; Miao, Qing; Sun, Guiyin; Bonicalzi, Vincenzo; Canavero, Sergio; Ren, Xiaoping

2018-05-01

Cephalosomatic anastomosis or what has been called a "head transplantation" requires full reconnection of the respective transected ends of the spinal cords. The GEMINI spinal cord fusion protocol has been developed for this reason. Here, we report the first randomized, controlled study of the GEMINI protocol in large animals. We conducted a randomized, controlled study of a complete transection of the spinal cord at the level of T10 in dogs at Harbin Medical University, Harbin, China. These dogs were followed for up to 8 weeks postoperatively by assessments of recovery of motor function, somato-sensory evoked potentials, and diffusion tensor imaging using magnetic resonance imaging. A total of 12 dogs were subjected to operative exposure of the dorsal aspect of the spinal cord after laminectomy and longitudinal durotomy followed by a very sharp, controlled, full-thickness, complete transection of the spinal cord at T10. The fusogen, polyethylene glycol, was applied topically to the site of the spinal cord transection in 7 of 12 dogs; 0.9% NaCl saline was applied to the site of transection in the remaining 5 control dogs. Dogs were selected randomly to receive polyethylene glycol or saline. All polyethylene glycol-treated dogs reacquired a substantial amount of motor function versus none in controls over these first 2 months as assessed on the 20-point (0-19), canine, Basso-Beattie-Bresnahan rating scale (P<.006). Somatosensory evoked potentials confirmed restoration of electrical conduction cranially across the site of spinal cord transection which improved over time. Diffusion tensor imaging, a magnetic resonance permutation that assesses the integrity of nerve fibers and cells, showed restitution of the transected spinal cord with polyethylene glycol treatment (at-injury level difference: P<.02). A sharply and fully transected spinal cord at the level of T10 can be reconstructed with restoration of many aspects of electrical continuity in large animals following the GEMINI spinal cord fusion protocol, with objective evidence of motor recovery and of electrical continuity across the site of transection, opening the way to the first cephalosomatic anastomosis. (Surgery 2017;160:XXX-XXX.). Copyright © 2017. Published by Elsevier Inc.

Ulinastatin attenuates neuropathic pain induced by L5-VRT via the calcineurin/IL-10 pathway.

PubMed

Ouyang, Handong; Nie, Bilin; Wang, Peizong; Li, Qiang; Huang, Wan; Xin, Wenjun; Zeng, Weian; Liu, Xianguo

2016-01-01

Previous studies have shown that ulinastatin, an effective inhibitor of the inflammatory response in clinical applications, can attenuate hyperalgesia in rodents. However, the underlying mechanism remains unclear. In the present study, we first examined the change in the calcineurin level, which plays an important role in regulating cytokine release in the nervous system, following lumbar 5 ventral root transection in the rat. Furthermore, we determined whether intraperitoneal (i.p.) injection of ulinastatin attenuated pain behavior via inhibition of the calcineurin-mediated inflammatory response induced by lumbar 5 ventral root transection. The results showed that the paw withdrawal threshold and paw withdrawal latency were significantly decreased following lumbar 5 ventral root transection compared to the sham group. Neuropathic pain induced by lumbar 5 ventral root transection significantly decreased the expression of calcineurin in the DRG, and calcineurin was mostly located with NF-200-positive cells, IB4-positive cells, and CGRP-positive cells and less with GFAP-positive satellite cells. Furthermore, intrathecal (i.t.) injection of exogenous calcineurin attenuated the pain behavior induced by lumbar 5 ventral root transection. Importantly, intraperitoneal injection of ulinastatin alleviated the pain behavior and calcineurin downregulation induced by lumbar 5 ventral root transection. Lastly, the cytokine IL-10 was significantly decreased following lumbar 5 ventral root transection, and application of calcineurin (intrathecal) or ulinastatin (intraperitoneal) inhibited the IL-10 downregulation induced by lumbar 5 ventral root transection. These results suggested that ulinastatin, by acting on the CN/IL-10 pathway, might be a novel and effective drug for the treatment of neuropathic pain. © The Author(s) 2016.

Ulinastatin attenuates neuropathic pain induced by L5-VRT via the calcineurin/IL-10 pathway

PubMed Central

Ouyang, Handong; Nie, Bilin; Wang, Peizong; Li, Qiang; Huang, Wan; Xin, Wenjun; Liu, Xianguo

2016-01-01

Previous studies have shown that ulinastatin, an effective inhibitor of the inflammatory response in clinical applications, can attenuate hyperalgesia in rodents. However, the underlying mechanism remains unclear. In the present study, we first examined the change in the calcineurin level, which plays an important role in regulating cytokine release in the nervous system, following lumbar 5 ventral root transection in the rat. Furthermore, we determined whether intraperitoneal (i.p.) injection of ulinastatin attenuated pain behavior via inhibition of the calcineurin-mediated inflammatory response induced by lumbar 5 ventral root transection. The results showed that the paw withdrawal threshold and paw withdrawal latency were significantly decreased following lumbar 5 ventral root transection compared to the sham group. Neuropathic pain induced by lumbar 5 ventral root transection significantly decreased the expression of calcineurin in the DRG, and calcineurin was mostly located with NF-200-positive cells, IB4-positive cells, and CGRP-positive cells and less with GFAP-positive satellite cells. Furthermore, intrathecal (i.t.) injection of exogenous calcineurin attenuated the pain behavior induced by lumbar 5 ventral root transection. Importantly, intraperitoneal injection of ulinastatin alleviated the pain behavior and calcineurin downregulation induced by lumbar 5 ventral root transection. Lastly, the cytokine IL-10 was significantly decreased following lumbar 5 ventral root transection, and application of calcineurin (intrathecal) or ulinastatin (intraperitoneal) inhibited the IL-10 downregulation induced by lumbar 5 ventral root transection. These results suggested that ulinastatin, by acting on the CN/IL-10 pathway, might be a novel and effective drug for the treatment of neuropathic pain. PMID:27175013

Effects of ungulate management on vegetation at Hakalau Forest National Wildlife Refuge, Hawai'i Island

USGS Publications Warehouse

Hess, S.C.; Jeffrey, J.J.; Pratt, L.W.; Ball, D.L.

2010-01-01

We compiled and analysed data from 1987-2004 on vegetation monitoring during feral ungulate management at Hakalau Forest National Wildlife Refuge, a tropical montane rainforest on the island of Hawai'i All areas in the study had previously been used by ungulates, but cattle (Bos taurus) were removed and feral pig (Sus scrofa) populations were reduced during the study period. We monitored six line-intercept transects, three in previously high ungulate use areas and three in previously low ungulate use areas. We measured nine cover categories with the line-intercept method: native ferns; native woody plants; bryophytes; lichens; alien grasses; alien herbs; litter; exposed soil; and coarse woody debris. Vegetation surveys were repeated four times over a 16-year period. Vegetation monitoring revealed a strong increase in native fern cover and slight decreases in cover of bryophytes and exposed soil. Mean cover of native plants was generally higher in locations that were formerly lightly grazed, while alien grass and herb cover was generally higher in areas that were heavily grazed, although these effects were not statistically significant. These responses may represent early serai processes in forest regeneration following the reduction of feral ungulate populations. In contrast to many other Hawaiian forests which have become invaded by alien grasses and herbs after ungulate removal, HFNWR has not experienced this effect.

Transect versus grid trapping arrangements for sampling small-mammal communities

Treesearch

Dean E. Pearson; Leonard F. Ruggiero

2003-01-01

We compared transect and grid trapping arrangements for assessing small-mammal community composition and relative abundance for 2 years in 2 forest cover types in west-central Montana, USA. Transect arrangements yielded more total captures, more individual captures, and more species than grid arrangements in both cover types in both years. Differences between...

Demonstration of Pelvic Anatomy by Modified Midline Transection that Maintains Intact Internal Pelvic Organs

ERIC Educational Resources Information Center

Steinke, Hanno; Saito, Toshiyuki; Herrmann, Gudrun; Miyaki, Takayoshi; Hammer, Niels; Sandrock, Mara; Itoh, Masahiro; Spanel-Borowski, Katharina

2010-01-01

Gross dissection for demonstrating anatomy of the human pelvis has traditionally involved one of two approaches, each with advantages and disadvantages. Classic hemisection in the median plane through the pelvic ring transects the visceral organs but maintains two symmetric pelvic halves. An alternative paramedial transection compromises one side…

Sediment loads and transport at constructed chutes along the Missouri River - Upper Hamburg Chute near Nebraska City, Nebraska, and Kansas Chute near Peru, Nebraska

USGS Publications Warehouse

Densmore, Brenda K.; Rus, David L.; Moser, Matthew T.; Hall, Brent M.; Andersen, Michael J.

2016-02-04

Comparisons of concentrations and loads from EWI samples collected from different transects within a study site resulted in few significant differences, but comparisons are limited by small sample sizes and large within-transect variability. When comparing the Missouri River upstream transect to the chute inlet transect, similar results were determined in 2012 as were determined in 2008—the chute inlet affected the amount of sediment entering the chute from the main channel. In addition, the Kansas chute is potentially affecting the sediment concentration within the Missouri River main channel, but small sample size and construction activities within the chute limit the ability to fully understand either the effect of the chute in 2012 or the effect of the chute on the main channel during a year without construction. Finally, some differences in SSC were detected between the Missouri River upstream transects and the chute downstream transects; however, the effect of the chutes on the Missouri River main-channel sediment transport was difficult to isolate because of construction activities and sampling variability.

Perioperative Hydrocortisone Reduces Major Complications After Pancreaticoduodenectomy: A Randomized Controlled Trial.

PubMed

Laaninen, Matias; Sand, Juhani; Nordback, Isto; Vasama, Kaija; Laukkarinen, Johanna

2016-11-01

The aim of this study was to study whether post-pancreaticoduodenectomy complications (PPDC) in high-risk patients can be reduced with hydrocortisone. Soft pancreas is a well-known risk factor for PPDC. Previously, we have shown that patients with >40% acini in the pancreatic transection line are most prone to PPDC. Recent studies have demonstrated that surgical trauma leads to inflammation of the pancreatic remnant, which precedes PPDC. On the basis of power analysis, randomized controlled trial (RCT) (Clinicaltrials.gov NCT01460615), 155 patients (February 2011-May 2015) scheduled for pancreaticoduodenectomy were randomized to intravenous (i.v.) treatment with hydrocortisone 100 mg or placebo. All patients received the first dose at the induction of anesthesia. During the operation, the percentage of acini was calculated from pancreatic transection line frozen samples by a pathologist. As planned, only the high-risk patients with >40% acini (n = 62) continued in the study to receive in total 8 doses of randomization-based hydrocortisone/placebo every 8 hours. Primary endpoints were urine trypsinogen positive days and overall complications (Clavien-Dindo III-IV). Postoperative pancreatic fistulas (POPFs), postpancreatectomy hemorrhage (PPH), and delayed gastric emptying (DGE) were also graded. Hydrocortisone treatment did not alter trypsinogen release (2 or more positive days 46% vs 50%), but it significantly reduced overall complications compared with placebo in the high-risk patients (18% vs 41%; P < 0.05; Clavien-Dindo III-IV). Also, clinically significant POPF (11% vs 27%), PPH (14% vs 24%), and DGE (29% vs 44%) tended to be lower in the hydrocortisone group. Ninety-day mortality was zero. This RCT shows that in high-risk patients, overall PPDC can be significantly reduced with hydrocortisone treatment. Inflammation may be an important mediator of PPDC.

Spatial patterns of distribution, abundance, and species diversity of small odontocetes estimated using density surface modeling with line transect sampling

NASA Astrophysics Data System (ADS)

Kanaji, Yu; Okazaki, Makoto; Miyashita, Tomio

2017-06-01

Spatial patterns of distribution, abundance, and species diversity of small odontocetes including species in the Delphinidae and Phocoenidae families were investigated using long-term dedicated sighting survey data collected between 1983 and 2006 in the North Pacific. Species diversity indices were calculated from abundance estimated using density surface modeling of line-transect data. The estimated abundance ranged from 19,521 individuals in killer whale to 1,886,022 in pantropical spotted dolphin. The predicted density maps showed that the habitats of small odontocetes corresponded well with distinct oceanic domains. Species richness was estimated to be highest between 30 and 40°N where warm- and cold-water currents converge. Simpson's Diversity Index showed latitudinal diversity gradients of decreasing species numbers toward the poles. Higher diversity was also estimated in the coastal areas and the zonal areas around 35-42°N. Coastal-offshore gradients and latitudinal gradients are known for many taxa. The zonal areas around 35°N and 40°N coincide with the Kuroshio Current and its extension and the subarctic boundary, respectively. These results suggest that the species diversity of small odontocetes primarily follows general patterns of latitudinal and longitudinal gradients, while the confluence of faunas originating in distinct water masses increases species diversify in frontal waters around 30-40°N. Population densities tended to be higher for the species inhabiting higher latitudes, but were highest for intermediate latitudes at approximately 35-40°N. According to latitudinal gradients in water temperature and biological productivity, the costs for thermoregulation will decrease in warmer low latitudes, while feeding efficiency will increase in colder high latitudes. These trade-offs could optimize population density in intermediate latitudes.

Locating the scala media in the fixed human temporal bone for therapeutic access: a preliminary study.

PubMed

Pau, H; Fagan, P; Oleskevich, S

2006-11-01

To investigate the location of the scala media in relation to the round window niche in human temporal bones. Ten human temporal bones were investigated by radical mastoidectomy and promontory drill-out. Temporal bone laboratory. The distance from the scala media to the anterior edge of the round window niche, measured by Fisch's stapedectomy measuring cylinders. The scala media was identified at the transection point of a vertical line 1.6 to 2.2 mm (mean=1.8 mm; standard deviation=0.2) anterior to the anterior edge of the round window niche and a horizontal line 0.2 mm inferior to the lower border of the oval window. This report demonstrates the point of entry into the scala media via the promontory in fixed temporal bone models, which may provide a site of entry for stem cells and gene therapy insertion.

SLICER Airborne Laser Altimeter Characterization of Canopy Structure and Sub-canopy Topography for the BOREAS Northern and Southern Study Regions: Instrument and Data Product Description

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Nickeson, Jaime (Editor); Harding, D. J.; Blair, J. B.; Rabine, D. L.; Still, K. L.

2000-01-01

SLICER data were acquired in support of BOREAS at all of the TF sites in the SSA and NSA, and along transects between the study areas. Data were acquired on 5 days between 18-Jul and 30-Jul-1996. Each coverage of a tower site is typically 40 km in length, with a minimum of 3 and a maximum of 10 lines across each tower oriented in a variety of azimuths. The SLICER data were acquired simultaneously with ASAS hyperspectral, multiview angle images. The SLICER Level 3 products consist of binary files for each flight line with a data record for each laser shot composed of 13 parameters and a 600-byte waveform that is the raw record of the backscatter laser energy reflected from Earth's surface. The SLICER data are stored in a combination of ASCII and binary data files.

Use of a Bioactive Scaffold to Stimulate ACL Healing Also Minimizes Post-traumatic Osteoarthritis after Surgery

PubMed Central

Murray, Martha M.; Fleming, Braden C.

2013-01-01

Background While ACL reconstruction is the treatment gold standard for ACL injury, it does not reduce the risk of post-traumatic osteoarthritis. Therefore, new treatments that minimize this postoperative complication are of interest. Bio-enhanced ACL repair, in which a bioactive scaffold is used to stimulate healing of an ACL transection, has shown considerable promise in short term studies. The long-term results of this technique and the effects of the bio-enhancement on the articular cartilage have not been previously evaluated in a large animal model. Hypothesis 1) The structural (tensile) properties of the porcine ACL at 6 and 12 months after injury are similar when treated with bio-enhanced ACL repair, bio-enhanced ACL reconstruction, or conventional ACL reconstruction, and all treatments yield results superior to untreated ACL transection. 2) After one year, macroscopic cartilage damage following bio-enhanced ACL repair is similar to bio-enhanced ACL reconstruction and less than conventional ACL reconstruction and untreated ACL transection. Study Design Controlled laboratory study (porcine model) Methods Sixty-two Yucatan mini-pigs underwent ACL transection and randomization to four experimental groups: 1) no treatment, 2) conventional ACL reconstruction, 3) “bio-enhanced” ACL reconstruction using a bioactive scaffold, and 4) “bio-enhanced” ACL repair using a bioactive scaffold. The biomechanical properties of the ligament or graft and macroscopic assessments of the cartilage surfaces were performed after 6 and 12 months of healing. Results The structural properties (i.e., linear stiffness, yield and maximum loads) of the ligament following bio-enhanced ACL repair were not significantly different from bio-enhanced ACL reconstruction or conventional ACL reconstruction, but were significantly greater than untreated ACL transection after 12 months of healing. Macroscopic cartilage damage after bio-enhanced ACL repair was significantly less than untreated ACL transection and bio-enhanced ACL reconstruction, and there was a strong trend (p=.068) that it was less than conventional ACL reconstruction in the porcine model at 12 months. Conclusions Bio-enhanced ACL repair produces a ligament that is biomechanically similar to an ACL graft and provides chondroprotection to the joint following ACL surgery. Clinical Relevance Bio-enhanced ACL repair may provide a new less invasive treatment option that reduces cartilage damage following joint injury. PMID:23857883

Quantitative histological grading methods to assess subchondral bone and synovium changes subsequent to medial meniscus transection in the rat

PubMed Central

Kloefkorn, Heidi E.; Allen, Kyle D.

2017-01-01

Aim of the Study The importance of the medial meniscus to knee health is demonstrated by studies which show meniscus injuries significantly increase the likelihood of developing osteoarthritis (OA), and knee OA can be modeled in rodents using simulated meniscus injuries. Traditionally, histological assessments of OA in these models have focused on damage to the articular cartilage; however, OA is now viewed as a disease of the entire joint as an organ system. The aim of this study was to develop quantitative histological measures of bone and synovial changes in a rat medial meniscus injury model of knee OA. Materials and Methods To initiate OA, a medial meniscus transection (MMT) and a medial collateral ligament transection (MCLT) were performed in 32 male Lewis rats (MMT group). MCLT alone served as the sham procedure in 32 additional rats (MCLT sham group). At weeks 1, 2, 4, and 6 post-surgery, histological assessment of subchondral bone and synovium was performed (n = 8 per group per time point). Results Trabecular bone area and the ossification width at the osteochondral interface increased in both the MMT and MCLT groups. Subintimal synovial cell morphology also changed in MMT and MCLT groups relative to naïve animals. Conclusions OA affects the joint as an organ system, and quantifying changes throughout an entire joint can improve our understanding of the relationship between joint destruction and painful OA symptoms following meniscus injury. PMID:27797605

Spatial patterns of bee captures in North American bowl trapping surveys

USGS Publications Warehouse

Droege, Sam; Tepedino, Vincent J.; Lebuhn, Gretchen; Link, William; Minckley, Robert L.; Chen, Qian; Conrad, Casey

2010-01-01

1. Bowl and pan traps are now commonly used to capture bees (Hymenoptera: Apiformes) for research and surveys. 2. Studies of how arrangement and spacing of bowl traps affect captures of bees are needed to increase the efficiency of this capture technique. 3. We present results from seven studies of bowl traps placed in trapping webs, grids, and transects in four North American ecoregions (Mid-Atlantic, Coastal California, Chihuahuan Desert, and Columbia Plateau). 4. Over 6000 specimens from 31 bee genera were captured and analysed across the studies. 5. Based on the results from trapping webs and distance tests, the per bowl capture rate of bees does not plateau until bowls are spaced 3–5 m apart. 6. Minor clumping of bee captures within transects was detected, with 26 of 56 transects having index of dispersion values that conform to a clumped distribution and 39 transects having positive Green's index values, 13 with zero, and only four negative. However, degree of clumping was slight with an average value of only 0.06 (the index ranges from -1 to 1) with only five values >0.15. Similarly, runs tests were significant for only 5.9% of the transects. 7. Results indicate that (i) capture rates are unaffected by short distances between bowls within transects and (ii) that bowls and transects should be dispersed throughout a study site.

Recovery of bimodal locomotion in the spinal-transected salamander, Pleurodeles waltlii.

PubMed

Chevallier, Stéphanie; Landry, Marc; Nagy, Frédéric; Cabelguen, Jean-Marie

2004-10-01

Electromyographic (EMG) analysis was used to provide an assessment of the recovery of locomotion in spinal-transected adult salamanders (Pleurodeles waltlii). EMG recordings were performed during swimming and overground stepping in the same animal before and at various times (up to 500 days) after a mid-trunk spinalization. Two-three weeks after spinalization, locomotor EMG activity was limited to the forelimbs and the body rostral to the transection. Thereafter, there was a return of the locomotor EMG activity at progressively more caudal levels below the transection. The animals reached stable locomotor patterns 3-4 months post-transection. Several locomotor parameters (cycle duration, burst duration, burst proportion, intersegmental phase lag, interlimb coupling) measured at various recovery times after spinalization were compared with those in intact animals. These comparisons revealed transient and long-term alterations in the locomotor parameters both above and below the transection site. These alterations were much more pronounced for swimming than for stepping and revealed differences in adaptive plasticity between the two locomotor networks. Recovered locomotor activity was immediately abolished by retransection at the site of the original spinalization, suggesting that the spinal cord caudal to the transection was reinnervated by descending brain and/or propriospinal axons, and that this regeneration contributed to the restoration of locomotor activity. Anatomical studies conducted in parallel further demonstrated that some of the regenerated axons came from glutamatergic and serotoninergic immunoreactive cells within the reticular formation.

A New Sample Transect through the Sierra Madre Occidental Silicic Large Igneous Province in Southern Chihuahua State, Mexico: First Stratigraphic, Petrologic, and Geochemical Results

NASA Astrophysics Data System (ADS)

Andrews, G. D.; Davila Harris, P.; Brown, S. R.; Anderson, L.; Moreno, N.

2014-12-01

We completed a field sampling transect across the northern Sierra Madre Occidental silicic large igneous province (SMO) in December 2013. Here we present the first stratigraphic, petrological, and geochemical data from the transect between Hidalgo del Parral and Guadalupe y Calvo, Chihuahua, Mexico. This is the first new transect across the SMO in 25 years and the only one between existing NE - SW transects at Chihuahua - Hermosillo and Durango - Mazatlan. The 245 km-long transect along Mexican Highway 24 crosses the boundary between the extended (Basin and Range) and non-extended (Sierra Madre Occidental plateau) parts of the SMO, and allows sampling of previously undescribed Oligocene (?) - early Miocene (?) rhyolitic ignimbrites and lavas, and occasional post-rhyolite, Miocene (?) SCORBA basaltic andesite lavas. 54 samples of rhyolitic ignimbrites (40) and lavas (7), and basaltic andesite lavas (7) were sampled along the transect, including 8 canyon sections with more than one unit. The ignimbrites are overwhelming rhyodacitic (plagioclase and hornblende or biotite phyric) or rhyolitic (quartz (+/- sanidine) in additon to plagioclase and hornblende or biotite phyric) and sparsely to highly phyric. Preliminary petrographic (phenocryst abundances) and geochemical (major and trace element) will be presented and compared to existing data from elsewhere in the SMO. Future work will include U-Pb zircon dating and whole rock and in-zircon radiogenic isotopes analyses.

Swimming behaviour and calcium incorporation into inner ear otoliths of fish after vestibular nerve transection

NASA Astrophysics Data System (ADS)

Edelmann, E.; Anken, R. H.; Rahmann, H.

2004-01-01

Previous investigations on neonate swordtail fish (Xiphophorus helleri) revealed that otolithic calcium incorporation (visualized using the calcium tracer alizarin complexone) and thus otolith growth had ceased after nerve transection, supporting a hypothesis according to which the gravity-dependent otolith growth is regulated neuronally. Subsequent investigations on larval cichlid fish (Oreochromis mossambicus) yielded contrasting results, repeatedly depending on the particular batch of cichlids investigated. Like most neonate swordtails, Type I cichlids revealed a stop of calcium incorporation after unilateral vestibular nerve transection. Their behaviour after transection was normal, and the otolithic calcium incorporation in controls of the same batch was symmetric. In Type II cichlids, however, vestibular nerve transection had no effect on otolithic calcium incorporation. They behaved kinetotically after transection (this kind of kinetosis was qualitatively similar to the swimming behaviour exhibited by larval cichlids during microgravity in the course of parabolic aircraft flights). The otolithic calcium incorporation in control animals was asymmetric. These results show that the effects of vestibular nerve transection as well as the efficacy of the mechanism, which regulates otolith growth/otolithic calcium incorporation, are - depending on the particular batch of animals - genetically predispositioned. In conclusion, the regulation of otolithic calcium incorporation is guided neuronally, in part via the vestibular nerve and, in part, via a further pathway, which remains to be addressed in the course of future investigations.

Swimming Behavior and Calcium Incorporation into inner Ear Otoliths of Fish after vestibular Nerve Transection

NASA Astrophysics Data System (ADS)

Edelmann, E.; Anken, R.; Rahmann, H.

Previous investigations on neonate swordtail fish (Xiphophorus helleri) revealed that otolithic calcium incorporation (visualized using the calcium-tracer alizarin- complexone) and thus otolith growth had ceased after nerve transection, supporting a hypothesis according to which the gravity-dependent otolith growth is regulated neuronally. Subsequent investigations on larval cichlid fish (Oreochromis mossambicus) yielded contrasting results, repeatedly depending on the particular batch of cichlids investigated: Like neonate swordtails, type I cichlids revealed a stop of calcium incorporation after unilateral vestibular nerve transection. Their behaviour after transection was normal and the otolithic calcium incorporation in controls of the same batch was symmetrical. In type II cichlids, however, vestibular nerve transection had no effect on otolithic calcium incorporation. They behaved kinetotically after transection (this kind of kinetosis was qualitatively similar to the swimming behaviour exhibited by larval cichlids during microgravity in the course of parabolic aircraft flights). The otolithic calcium incorporation in control animals was asymmetrical. These results stongly suggest that the effects of vestibular nerve transection as well as the efficacy of the mechanism, which regulates otolith growth/otolithic calcium incorporation, are - depending on the particular batch of animals - genetically predispositioned. Thus, it is assumed that the mechanisms regulating otolith growth and equlibibrium differ in the two types of cichlid fish. This work was financially supported by the German Aerospace Center (DLR) e.V. (FKZ: 50 WB 9997).

Acoustic Reverse Time Migration of the Cascadia Subduction Zone Dataset

NASA Astrophysics Data System (ADS)

Jia, L.; Mallick, S.

2017-12-01

Reverse time migration (RTM) is a wave-equation based migration method, which provides more accurate images than ray-based migration methods, especially for the structures in deep areas, making it an effective tool for imaging the subduction plate boundary. In this work, we extend the work of Fortin (2015) and applied acoustic finite-element RTM on the Cascadia Subduction Zone (CSZ) dataset. The dataset was acquired by Cascadia Open-Access Seismic Transects (COAST) program, targeting the megathrust in the central Cascadia subduction zone (Figure 1). The data on a 2D seismic reflection line that crosses the Juan de Fuca/North American subduction boundary off Washington (Line 5) were pre-processed and worked through Kirchhoff prestack depth migration (PSDM). Figure 2 compares the depth image of Line 5 of the CSZ data using Kirchhoff PSDM (top) and RTM (bottom). In both images, the subducting plate is indicated with yellow arrows. Notice that the RTM image is much superior to the PSDM image by several aspects. First, the plate boundary appears to be much more continuous in the RTM image than the PSDM image. Second, the RTM image indicates the subducting plate is relatively smooth on the seaward (west) side between 0-50 km. Within the deformation front of the accretionary prism (50-80 km), the RTM image shows substantial roughness in the subducting plate. These features are not clear in the PSDM image. Third, the RTM image shows a lot of fine structures below the subducting plate which are almost absent in the PSDM image. Finally, the RTM image indicates that the plate is gently dipping within the undeformed sediment (0-50 km) and becomes steeply dipping beyond 50 km as it enters the deformation front of the accretionary prism. Although the same conclusion could be drawn from the discontinuous plate boundary imaged by PSDM, RTM results are far more convincing than the PSDM.

Biodiversity of seagrass bed in Balanan Resort - Baluran National Park

NASA Astrophysics Data System (ADS)

Soedarti, T.; Hariyanto, S.; Wedayanti, A.; Rahmawati, A. D.; Safitri, D. P.; Alificia, R. I.; Suwono

2017-09-01

Seagrass beds are flowering plants that live on the seabed. Seagrass provides a habitat for diverse flora and fauna, spawning ground, nursery ground, raising ground, and feeding ground. Balanan Resort - Baluran National Park has many beaches, such as Kajang Beach, Si Banjir Beach, Kakapa Beach, and Serondo Beach. This study was aimed to determine species composition, seagrass dominated, and the diversity index of seagrass and substrate in Resort Balanan - Baluran National Park. This research was carried out in Kajang Beach, Sibanjir Beach, Kakapa Beach, and Sirondo Beach from August to September 2015 using belt transect method, each transect consists of 15 plots (19 transects = 285 plots) and using the frame of 1x1 m. This research found seven genera and ten species : Cymodoce (C rotundata and C. serrulata), Syringodium (S. isoelifolium), Thallassodendron (T. ciliatum), Enhalus (E. acoroides) , Halodule (H. univernis and H. pinifolia), Halophila (H. ovalis and H. decipiens), and Thalassia (T. hemprichii). The diversity index of seagrass bed was moderate [H'=1.90] in Balanan Resort. The substrate of seagrass bed was mud, gravel, sand, clay sand and rubble in Balanan Resort. The dominance index was near zero [C = 0.194], that means no dominant species.

Strip transect sampling and analysis for avian habitat studies

Treesearch

Richard N. Conner; James G. Dickson

1980-01-01

Censusing procedures that detect effects of habitat treatment on birds are outlined. We suggest that only relative values of bird species diversity, equitability, abundance, and species richness need be obtained. We also suggest that 4, 250-m strip transects per treatment and 8-10 trips over each transect are adequate. Aspects of sampling design that affect within-...

Comparison of methods to monitor the distribution and impacts of unauthorized travel routes in a border park

USGS Publications Warehouse

Esque, Todd C.; Inman, Rich; Nussear, Kenneth E.; Webb, Robert; Girard, M.M.; DeGayner, J.

2016-01-01

The distribution and abundance of human-caused disturbances vary greatly through space and time and are cause for concern among land stewards in natural areas of the southwestern border-lands between the USA and Mexico. Human migration and border protection along the international boundary create Unauthorized Trail and Road (UTR) networks across National Park Service lands and other natural areas. UTRs may cause soil erosion and compaction, damage to vegetation and cultural resources, and may stress wildlife or impede their movements. We quantify the density and severity of UTR disturbances in relation to soils, and compare the use of previously established targeted trail assessments (hereafter — targeted assessments) against randomly placed transects to detect trail densities at Coronado National Memorial in Arizona in 2011. While trail distributions were similar between methods, targeted assessments estimated a large portion of the park to have the lowest density category (0–5 trail encounters per/km2), whereas the random transects in 2011 estimated more of the park as having the higher density categories (e.g., 15–20 encounters per km2category). Soil vulnerability categories that were assigned, a priori, based on published soil texture and composition did not accurately predict the impact of UTRs on soil, indicating that empirical methods may be better suited for identifying severity of compaction. While the estimates of UTR encounter frequencies were greater using the random transects than the targeted assessments for a relatively short period of time, it is difficult to determine whether this difference is dependent on greater cross-border activity, differences in technique, or from confounding environmental factors. Future surveys using standardized sampling techniques would increase accuracy.

Histomorphometric and Ultrastructural Evaluation of Long-Term Alpha Lipoic Acid and Vitamin B12 Use After Experimental Sciatic Nerve Injury in Rats.

PubMed

Arikan, Murat; Togral, Guray; Hasturk, Askin Esen; Horasanli, Bahriye; Helvacioglu, Fatma; Dagdeviren, Atilla; Tekindal, Mustafa Agah; Parpucu, Murat

2016-01-01

To analyze the therapeutic effects of long-term alpha lipoic acid (A-LA) and vitamin B12 use via histomorphometric methods and electron microscopy in the transected sciatic nerves of rats. Forty rats were randomized into five groups (n=8/group). In group I, 1 cm segment of sciatic nerve was resected without any other intervention. In group II (sham), following right sciatic nerve transection, primary epineurial anastomosis was performed by placing the edges of the nerve end-to-end. In group III (saline), after right sciatic nerve transection, the ends of the nerves were brought together and closed after application of intraperitoneal physiologic saline. In group IV, 2 mg/kg of alpha lipoic acid and in group V, 2 mg/kg of vitamin B12 was administered intraperitoneally before surgical intervention. Histomorphometric and electron microscopic analyses revealed that vitamin B12 did not prevent structural changes, abnormal myelination and g-ratio deviations regarding the functional aspects of the sciatic nerve. Alpha lipoic acid was more effective in restructuring the histomorphometric and structural aspects of the nerve with more myelinated fibers with optimal values (0.55-0.68) than vitamin B12 groups, in which the number of myelinated nerve fibers significantly decreased at optimal intervals (0.55-0.68). A-LA administration following peripheral nerve transection injury is more effective in promoting nerve healing regarding the structural aspects of the sciatic nerve compared to vitamin B12 and also myelination of nerve fibers by increasing g-values.

Determining Optimal Location and Numbers of Sample Transects for Characterization of UXO Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

BILISOLY, ROGER L.; MCKENNA, SEAN A.

2003-01-01

Previous work on sample design has been focused on constructing designs for samples taken at point locations. Significantly less work has been done on sample design for data collected along transects. A review of approaches to point and transect sampling design shows that transects can be considered as a sequential set of point samples. Any two sampling designs can be compared through using each one to predict the value of the quantity being measured on a fixed reference grid. The quality of a design is quantified in two ways: computing either the sum or the product of the eigenvalues ofmore » the variance matrix of the prediction error. An important aspect of this analysis is that the reduction of the mean prediction error variance (MPEV) can be calculated for any proposed sample design, including one with straight and/or meandering transects, prior to taking those samples. This reduction in variance can be used as a ''stopping rule'' to determine when enough transect sampling has been completed on the site. Two approaches for the optimization of the transect locations are presented. The first minimizes the sum of the eigenvalues of the predictive error, and the second minimizes the product of these eigenvalues. Simulated annealing is used to identify transect locations that meet either of these objectives. This algorithm is applied to a hypothetical site to determine the optimal locations of two iterations of meandering transects given a previously existing straight transect. The MPEV calculation is also used on both a hypothetical site and on data collected at the Isleta Pueblo to evaluate its potential as a stopping rule. Results show that three or four rounds of systematic sampling with straight parallel transects covering 30 percent or less of the site, can reduce the initial MPEV by as much as 90 percent. The amount of reduction in MPEV can be used as a stopping rule, but the relationship between MPEV and the results of excavation versus no-further-action decisions is site specific and cannot be calculated prior to the sampling. It may be advantageous to use the reduction in MPEV as a stopping rule for systematic sampling across the site that can then be followed by focused sampling in areas identified has having UXO during the systematic sampling. The techniques presented here provide answers to the questions of ''Where to sample?'' and ''When to stop?'' and are capable of running in near real time to support iterative site characterization campaigns.« less

Optimizing observational networks combining gliders, moored buoys and FerryBox in the Bay of Biscay and English Channel

NASA Astrophysics Data System (ADS)

Charria, Guillaume; Lamouroux, Julien; De Mey, Pierre

2016-10-01

Designing optimal observation networks in coastal oceans remains one of the major challenges towards the implementation of future efficient Integrated Ocean Observing Systems to monitor the coastal environment. In the Bay of Biscay and the English Channel, the diversity of involved processes (e.g. tidally-driven circulation, plume dynamics) requires to adapt observing systems to the specific targeted environments. Also important is the requirement for those systems to sustain coastal applications. Two observational network design experiments have been implemented for the spring season in two regions: the Loire River plume (northern part of the Bay of Biscay) and the Western English Channel. The method used to perform these experiments is based on the ArM (Array Modes) formalism using an ensemble-based approach without data assimilation. The first experiment in the Loire River plume aims to explore different possible glider endurance lines combined with a fixed mooring to monitor temperature and salinity. Main results show an expected improvement when combining glider and mooring observations. The experiment also highlights that the chosen transect (along-shore and North-South, cross-shore) does not significantly impact the efficiency of the network. Nevertheless, the classification from the method results in slightly better performances for along-shore and North-South sections. In the Western English Channel, a tidally-driven circulation system, added value of using a glider below FerryBox temperature and salinity measurements has been assessed. FerryBox systems are characterised by a high frequency sampling rate crossing the region 2 to 3 times a day. This efficient sampling, as well as the specific vertical hydrological structure (which is homogeneous in many sub-regions of the domain), explains the fact that the added value of an associated glider transect is not significant. These experiments combining existing and future observing systems, as well as numerical ensemble simulations, highlight the key issue of monitoring the whole water column in and close to river plumes (using gliders for example) and the efficiency of the surface high frequency sampling from FerryBoxes in macrotidal regions.

Evaluation of Meniscal Mechanics and Proteoglycan Content in a Modified Anterior Cruciate Ligament Transection Model

PubMed Central

Fischenich, Kristine M.; Coatney, Garrett A.; Haverkamp, John H.; Button, Keith D.; DeCamp, Charlie; Haut, Roger C.; Haut Donahue, Tammy L.

2014-01-01

Post-traumatic osteoarthritis (PTOA) develops as a result of traumatic loading that causes tears of the soft tissues in the knee. A modified transection model, where the anterior cruciate ligament (ACL) and both menisci were transected, was used on skeletally mature Flemish Giant rabbits. Gross morphological assessments, elastic moduli, and glycosaminoglycan (GAG) coverage of the menisci were determined to quantify the amount of tissue damage 12 weeks post injury. This study is one of the first to monitor meniscal changes after inducing combined meniscal and ACL transections. A decrease in elastic moduli as well as a decrease in GAG coverage was seen. PMID:24749144

Integration of potential-field and digital geologic data for two North American geoscience transects

USGS Publications Warehouse

Phillips, J.D.

1990-01-01

Two North American contributions to the Global Geoscience Transects Program, the Quebec-Maine-Gulf of Maine transect and the Great Lakes portion of the United States-Canadian Border transect, are among the first to produce digital geology in a form that can be combined with gridded gravity and aeromagnetic data. Maps of shaded relief and color-composite bandpass-filtered potential-field data combined with overlays of digitized geologic contacts and faults reveal significant new geologic information, including the relative thickness of plutons, the structure of poorly exposed or concealed magnetic units, and possible evidence for mineralized ground. -from Author

Seismic structure from multi-channel seismic reflection and wide-angle data of Transect 0E in the Southern Gulf of California

NASA Astrophysics Data System (ADS)

Paramo, P.; Holbrook, W.; Brown, H.; Lizarralde, D.; Fletcher, J.; Umhoefer, P.; Kent, G.; Harding, A.; Gonzalez, A.; Axen, G.

2005-12-01

We present a velocity model from wide-angle data along with coincident prestack depth migration sections from seismic reflection data collected in the southern Gulf of California. Transect 0E runs NE to SW from the hills of Sierra Madre in mainland Mexico near Mazatlan to approximately 115 km into Gulf of California waters. Wide-angle data were recorded by 9 ocean bottom seismometers, deployed by the R/V New Horizon and 10 Reftek seismometers located along onshore extension of the transect. The average spacing for the OBS and Refteks is ~12 km and shots were fired from the R/V Maurice Ewing at 150 m intervals. Transect 0E crosses what it is believed to be extended continental crust and lies in the initial direction of extension characteristic of the proto-gulf. Preliminary results from the velocity model show upper crustal velocities of 6.1-6.3 km/s and lower crustal velocities of 6.7-7.0 km/s along the entire transect. Seismic velocities and crustal thicknesses observed along transect 0E are characteristic of non-volcanic margins.

Vegetation Structure of Ebony Leaf Monkey (Trachypithecus auratus) Habitat in Kecubung Ulolanang Nature Preservation Central Java-Indonesia

NASA Astrophysics Data System (ADS)

Ervina, Rahmawati; Wasiq, Hidayat Jafron

2018-02-01

Kecubung Ulolanang Nature Preservation is ebony leaf monkey's habitats in Central Java Indonesia. Continuously degradation of their population is caused by illegal hunting and habitat degradation that made this species being vulnerable. Habitat conservation is one of important aspects to prevent them from extinction. The purpose of this research was to analyze the vegetation's structure and composition, which was potentially, becomes habitat and food source for the monkeys. Data collected using purposive sampling with line transect method of four different level of vegetation. Data analysis used Important Value Index and Diversity Index. There were 43 species of vegetation at seedling stage, 18 species at sapling stage, 8 species at poles stage and 27 species at trees stage. Species that had the highest important value index at seedling was Stenochlaena palustri , at the sapling was Gnetum gnemon, at pole was Swietenia mahagoni and at tree was Tectona grandis . Species of trees those were potentially to become habitat (food source) for ebony leaf monkey were T. grandis, Dipterocarpus gracilis, Quercus sundaica and Ficus superba. The highest diversity index was at seedling gwoth stage.

Bathymetric map of the south part of Great Salt Lake, Utah, 2005

USGS Publications Warehouse

Baskin, Robert L.; Allen, David V.

2005-01-01

The U.S. Geological Survey, in cooperation with the Utah Department of Natural Resources, Division of Wildlife Resources, collected bathymetric data for the south part of Great Salt Lake during 2002–04 using a single beam, high-definition fathometer and real-time differential global positioning system. Approximately 7.6 million depth readings were collected along more than 1,050 miles of survey transects for construction of this map. Sound velocities were obtained in conjunction with the bathymetric data to provide time-of-travel corrections to the depth calculations. Data were processed with commercial hydrographic software and exported into geographic information system (GIS) software for mapping. Because of the shallow nature of the lake and the limitations of the instrumentation, contours above an altitude of 4,193 feet were digitized from existing USGS 1:24,000 source-scale digital line graph data.For additional information on methods used to derive the bathymetric contours for this map, please see Baskin, Robert L., 2005, Calculation of area and volume for the south part of Great Salt Lake, Utah, U.S. Geological Survey Open-File Report OFR–2005–1327.

Density and Habitat Relationships of the Endemic White Mountain Fritillary (Boloria chariclea montinus) (Lepidoptera: Nymphalidae).

PubMed

McFarland, Kent P; Lloyd, John D; Hardy, Spencer P

2017-06-04

We conducted point counts in the alpine zone of the Presidential Range of the White Mountains, New Hampshire, USA, to estimate the distribution and density of the rare endemic White Mountain Fritillary ( Boloria chariclea montinus ). Incidence of occurrence and density of the endemic White Mountain Fritillary during surveys in 2012 and 2013 were greatest in the herbaceous-snowbank plant community. Densities at points in the heath-shrub-rush plant community were lower, but because this plant community is more widespread in the alpine zone, it likely supports the bulk of adult fritillaries. White Mountain Fritillary used cushion-tussock, the other alpine plant community suspected of providing habitat, only sparingly. Detectability of White Mountain Fritillaries varied as a consequence of weather conditions during the survey and among observers, suggesting that raw counts yield biased estimates of density and abundance. Point counts, commonly used to study and monitor populations of birds, were an effective means of sampling White Mountain Fritillary in the alpine environment where patches of habitat are small, irregularly shaped, and widely spaced, rendering line-transect methods inefficient and difficult to implement.

A technique for the determination of Louisiana marsh salinity zone from vegetation mapped by multispectral scanner data: A comparison of satellite and aircraft data

NASA Technical Reports Server (NTRS)

Butera, M. K.

1977-01-01

Vegetation in selected study areas on the Louisiana coast was mapped using low altitude aircraft and satellite (LANDSAT) multispectral scanner data. Fresh, brackish, and saline marshes were then determined from the remotely sensed presence of dominant indicator plant associations. Such vegetational classifications were achieved from data processed through a standard pattern recognition computer program. The marsh salinity zone maps from the aircraft and satellite data compared favorably within the broad salinity regimes. The salinity zone boundaries determined by remote sensing compared favorably with those interpolated from line-transect field observations from an earlier year.

Spatial and temporal variability of soil hydraulic properties of topsoil affected by soil erosion

NASA Astrophysics Data System (ADS)

Nikodem, Antonin; Kodesova, Radka; Jaksik, Ondrej; Jirku, Veronika; Klement, Ales; Fer, Miroslav

2014-05-01

This study is focused on the comparison of soil hydraulic properties of topsoil that is affected by erosion processes. In order to include variable morphological and soil properties along the slope three sites - Brumovice, Vidim and Sedlčany were selected. Two transects (A, B) and five sampling sites along each one were chosen. Soil samples were taken in Brumovice after the tillage and sowing of winter wheat in October 2010 and after the wheat harvest in August 2011. At locality Vidim and Sedlčany samples were collected in May and August 2012. Soil hydraulic properties were studied in the laboratory on the undisturbed 100-cm3 soil samples placed in Tempe cells using the multi-step outflow test. Soil water retention data points were obtained by calculating water balance in the soil sample at each pressure head step of the experiment. The single-porosity model in HYDRUS-1D was applied to analyze the multi-step outflow and to obtain the parameters of soil hydraulic properties using the numerical inversion. The saturated hydraulic conductivities (Ks) and unsaturated hydraulic conductivities (Kw) for the pressure head of -2 cm of topsoil were also measured after the harvest using Guelph permeameter and Minidisk tensiometer, respectively. In general soil water retention curves measured before and after vegetation period apparently differed, which indicated soil material consolidation and soil-porous system rearrangement. Soil water retention curves obtained on the soil samples and hydraulic conductivities measured in the field reflected the position at the elevation transect and the effect of erosion/accumulation processes on soil structure and consequently on the soil hydraulic properties. The highest Ks values in Brumovice were obtained at the steepest parts of the elevation transects, that have been the most eroded. The Ks values at the bottom parts decreased due to the sedimentation of eroded soil particles. The change of the Kw values along transects didn't show similar trends. However, the variability of values within both transects was low. Higher values were obtained in transect B, where the soil was more affected by erosion. The highest values of Ks as well as the value of Kw were also obtained in the steepest part of transect A in Vidim. This trend was not observed in transect B. The results corresponded with measured retention curves. Two different trends were shown in Sedlčany. While the highest values of Ks and Kw were found in the upper part of transect A, in the case of transect B the highest values were measured at the bottom of transect. Differences observed at both localities were caused by the different terrain attributes of both transects and extent of soil erosion. Acknowledgement: Authors acknowledge the financial support of the Ministry of Agriculture of the Czech Republic (QJ1230319).

Measurements and Interpretation of Surface Mixing Ratios of CH4 and CO and δ 13C and δ D of CH4 in Air from Pacific Ocean Transects Between Auckland, New Zealand and Los Angeles, California

NASA Astrophysics Data System (ADS)

Ajie, H. O.; Tyler, S. C.; Gotoh, A. A.; McMillan, A. M.; Rice, A. L.; Lowe, D. C.

2003-12-01

We report on measurements of atmospheric CH4 and CO mixing ratios and δ 13C of CH4 from air samples collected every 2.5 to 5° latitude along a transect over the Pacific Ocean using container ships of P&O Nedlloyd (formerly Blue Star) shipping line. Data presented here begins in June 1996 and extends to January 2002. Scientists from the National Institute of Water and Atmospheric Research in New Zealand and from University of California, Irvine alternate sampling trips so that a transect between Auckland, New Zealand (35° S) and Los Angeles, California (35° N) can be sampled over a period of ˜15 days approximately every four months. Data sets from the two laboratories are intercalibrated through a sample exchange program. The data provide detail on the spatial and seasonal variation of CH4 and CO mixing ratios and stable isotope ratios of CH4 over the Pacific equatorial region, including the Intertropical Convergence Zone (ITCZ) and both northern and southern temperate zones to about 30° latitude, including the South Pacific Convergence Zone (SPCZ). Data from 18 transect samplings so far clearly show that δ 13C in the mid latitudes of both hemispheres are ˜6 months out of phase. In June, a minimum in δ 13C CH4 in the southern hemisphere (SH) coincides approximately with the maximum in the northern hemisphere (NH) seasonal cycle. Because the NH is less enriched in 13C than the SH this situation results in a remarkably flat gradient between 30° N and 30° S. In November the opposite situation occurs with the SH mid latitude maximum coinciding with the minimum in the NH cycle, leading to a relatively large gradient of ˜0.5‰ between the hemispheres. We discuss how CH4 and CO mixing ratios are related to the changing positions and strengths of the ITCZ and SPCZ and how this data can be used in multi-dimensional models of atmospheric chemistry and transport to better define CH4 sources and sinks both temporally and spatially.

Optimizing Sampling Efficiency for Biomass Estimation Across NEON Domains

NASA Astrophysics Data System (ADS)

Abercrombie, H. H.; Meier, C. L.; Spencer, J. J.

2013-12-01

Over the course of 30 years, the National Ecological Observatory Network (NEON) will measure plant biomass and productivity across the U.S. to enable an understanding of terrestrial carbon cycle responses to ecosystem change drivers. Over the next several years, prior to operational sampling at a site, NEON will complete construction and characterization phases during which a limited amount of sampling will be done at each site to inform sampling designs, and guide standardization of data collection across all sites. Sampling biomass in 60+ sites distributed among 20 different eco-climatic domains poses major logistical and budgetary challenges. Traditional biomass sampling methods such as clip harvesting and direct measurements of Leaf Area Index (LAI) involve collecting and processing plant samples, and are time and labor intensive. Possible alternatives include using indirect sampling methods for estimating LAI such as digital hemispherical photography (DHP) or using a LI-COR 2200 Plant Canopy Analyzer. These LAI estimations can then be used as a proxy for biomass. The biomass estimates calculated can then inform the clip harvest sampling design during NEON operations, optimizing both sample size and number so that standardized uncertainty limits can be achieved with a minimum amount of sampling effort. In 2011, LAI and clip harvest data were collected from co-located sampling points at the Central Plains Experimental Range located in northern Colorado, a short grass steppe ecosystem that is the NEON Domain 10 core site. LAI was measured with a LI-COR 2200 Plant Canopy Analyzer. The layout of the sampling design included four, 300 meter transects, with clip harvests plots spaced every 50m, and LAI sub-transects spaced every 10m. LAI was measured at four points along 6m sub-transects running perpendicular to the 300m transect. Clip harvest plots were co-located 4m from corresponding LAI transects, and had dimensions of 0.1m by 2m. We conducted regression analyses with LAI and clip harvest data to determine whether LAI can be used as a suitable proxy for aboveground standing biomass. We also compared optimal sample sizes derived from LAI data, and clip-harvest data from two different size clip harvest areas (0.1m by 1m vs. 0.1m by 2m). Sample sizes were calculated in order to estimate the mean to within a standardized level of uncertainty that will be used to guide sampling effort across all vegetation types (i.e. estimated within × 10% with 95% confidence). Finally, we employed a Semivariogram approach to determine optimal sample size and spacing.

Research and development of a new RF-assisted device for bloodless rapid transection of the liver: Computational modeling and in vivo experiments

PubMed Central

Burdío, Fernando; Berjano, Enrique J; Navarro, Ana; Burdío, José M; Grande, Luis; Gonzalez, Ana; Cruz, Ignacio; Güemes, Antonio; Sousa, Ramón; Subirá, Jorge; Castiella, Tomás; Poves, Ignasi; Lequerica, Juan L

2009-01-01

Background Efficient and safe transection of biological tissue in liver surgery is strongly dependent on the ability to address both parenchymal division and hemostasis simultaneously. In addition to the conventional clamp crushing or finger fracture methods other techniques based on radiofrequency (RF) currents have been extensively employed to reduce intraoperative blood loss. In this paper we present our broad research plan for a new RF-assisted device for bloodless, rapid resection of the liver. Methods Our research plan includes computer modeling and in vivo studies. Computer modeling was based on the Finite Element Method (FEM) and allowed us to estimate the distribution of electrical power deposited in the tissue, along with assessing the effect of the characteristics of the device on the temperature profiles. Studies based on in vivo pig liver models provided a comparison of the performance of the new device with other techniques (saline-linked technology) currently employed in clinical practice. Finally, the plan includes a pilot clinical trial, in which both the new device and the accessory equipment are seen to comply with all safety requirements. Results The FEM results showed a high electrical gradient around the tip of the blade, responsible for the maximal increase of temperature at that point, where temperature reached 100°C in only 3.85 s. Other hot points with lower temperatures were located at the proximal edge of the device. Additional simulations with an electrically insulated blade produced more uniform and larger lesions (assessed as the 55°C isotherm) than the electrically conducting blade. The in vivo study, in turn, showed greater transection speed (3 ± 0 and 3 ± 1 cm2/min for the new device in the open and laparoscopic approaches respectively) and also lower blood loss (70 ± 74 and 26 ± 34 mL) during transection of the liver, as compared to saline-linked technology (2 ± 1 cm2/min with P = 0.002, and 527 ± 273 mL with P = 0.001). Conclusion A new RF-assisted device for bloodless, rapid liver resection was designed, built and tested. The results demonstrate the potential advantages of this device over others currently employed. PMID:19296852

Seagrass Parameter Affect the Fish Assemblages in Karimunjawa Archipelago

NASA Astrophysics Data System (ADS)

Sri Susilo, Endang; Nugroho Sugianto, Denny; Munasik; Nirwani; Adhi Suryono, Chrisna

2018-02-01

Seagrass beds promote high species diversity, abundance and biomass, and become important habitats for some economically important fishes. Plants of seagrasses result in structurally highly complex habitats and offering feeding grounds, shelter from predation as well as nursery areas for diverse fish assemblages. However, research on fish communities in Southeast Asian seagrass bed is rarely conducted. In the present study fish assemblages in seagrass beds with different parameters (cover, diversity and similarity indices, domination) was investigated in the Karimunjawa Islands, Indonesia. The purpose of this study were to assess whether fish assemblages differ concerning on the abundance and the species number. This study was conducted on the seagrass bed on Karimunjawa Islands in Java Sea, particularly in the water of Menjangan Besar and Menjangan Kecil Island. Line-quadrant transect was used to assess seagrass data, while the occurrence and individual number of fish harboured in the selected seagrass bed was counted by using underwater visual census in the stationary point count transects. Seagrass cover in Menjangan Kecil Island (41%) with various canopy included both upper and lower canopy was considerable higher than those in Menjangan Besar Island (5%). Fish diversity, species composition and abundance are considerably different between the two study sites. This study revealed that seagrass density or cover and canopy structure affected the fish abundance and species number harboured.

Climate-driven speedup of alpine treeline forest growth in the Tianshan Mountains, Northwestern China.

PubMed

Qi, Zhaohuan; Liu, Hongyan; Wu, Xiuchen; Hao, Qian

2015-02-01

Forest growth is sensitive to interannual climatic change in the alpine treeline ecotone (ATE). Whether the alpine treeline ecotone shares a similar pattern of forest growth with lower elevational closed forest belt (CFB) under changing climate remains unclear. Here, we reported an unprecedented acceleration of Picea schrenkiana forest growth since 1960s in the ATE of Tianshan Mountains, northwestern China by a stand-total sampling along six altitudinal transects with three plots in each transect: one from the ATE between the treeline and the forest line, and the other two from the CFB. All the sampled P. schrenkiana forest patches show a higher growth speed after 1960 and, comparatively, forest growth in the CFB has sped up much slower than that in the ATE. The speedup of forest growth at the ATE is mainly accounted for by climate factors, with increasing temperature suggested to be the primary driver. Stronger water deficit as well as more competition within the CFB might have restricted forest growth there more than that within the ATE, implying biotic factors were also significant for the accelerated forest growth in the ATE, which should be excluded from simulations and predictions of warming-induced treeline dynamics. © 2014 John Wiley & Sons Ltd.

Population density of the western burrowing owl (Athene cunicularia hypugaea) in Mexican prairie dog (Cynomys mexicanus) colonies in northeastern Mexico.

PubMed

Ruiz Ayma, Gabriel; Olalla Kerstupp, Alina; Macías Duarte, Alberto; Guzmán Velasco, Antonio; González Rojas, José I

2016-08-26

The western burrowing owl (Athene cunicularia hypugaea) occurs throughout western North America in various habitats such as desert, short-grass prairie and shrub-steppe, among others, where the main threat for this species is habitat loss. Range-wide declines have prompted a need for reliable estimates of its populations in Mexico, where the size of resident and migratory populations remain unknown. Our objective was to estimate the abundance and density of breeding western burrowing owl populations in Mexican prairie dog (Cynomys mexicanus) colonies in two sites located within the Chihuahuan Desert ecoregion in the states of Nuevo Leon and San Luis Potosi, Mexico. Line transect surveys were conducted from February to April of 2010 and 2011. Fifty 60 ha transects were analyzed using distance sampling to estimate owl and Mexican prairie dog populations. We estimated a population of 2026 owls (95 % CI 1756-2336) in 2010 and 2015 owls (95 % CI 1573-2317) in 2011 across 50 Mexican prairie dog colonies (20,529 ha). The results represent the first systematic attempt to provide reliable evidence related to the size of the adult owl populations, within the largest and best preserved Mexican prairie dog colonies in Mexico.

A 4-year study of invasive and native spider populations in Maine

USGS Publications Warehouse

Jakob, Elizabeth M.; Porter, Adam H.; Ginsberg, Howard; Bednarski, Julie V.; Houser, Jeremy

2011-01-01

Invasive spiders pose potential threats to native spiders. In 2002, the European spider Linyphia triangularis (Clerck, 1757) (Araneae: Linyphiidae) was discovered in all but one county in Maine. At Acadia National Park, we conducted a 4-year study of L. triangularis and three native linyphiid species of a similar size (Frontinella communis (Hentz, 1850), Pityohyphantes subarcticus Chamberlin and Ivie, 1943, and Neriene radiata (Walckenaer, 1842)). Using line-transect surveys, we measured population densities in coastal and forest habitat. The density of L. triangularis varied across years but was always significantly higher on the coast than in the forest. In contrast, only one native species was present on the coast and at very low numbers. Coastal L. triangularis were larger and in better condition than those in the forest, and numbers and biomass of insect prey were also higher on the coast. In 2 years, we also conducted transects at a second coastal location in Maine where the invader was at low density. At that site, native densities were substantially higher than at either Acadia site. Our data are consistent with the hypothesis that L. triangularis is reducing populations of native spiders. Companion studies suggest that L. triangularis negatively impacts natives by usurping both web sites and webs.

Lessons from a Community-Based Program to Monitor Forest Vertebrates in the Brazilian Amazon

NASA Astrophysics Data System (ADS)

Benchimol, Maíra; von Mühlen, Eduardo M.; Venticinque, Eduardo M.

2017-09-01

A large number of sustainable use reserves recently have been titled in the Brazilian Amazonia. These reserves require public participation in the design and implementation of management and monitoring programs. Species-monitoring programs that engage local stakeholders may be useful for assessing wildlife status over the long term. We collaborated on the development of a participatory program to monitor forest vertebrates in the Piagaçu-Purus Sustainable Development Reserve and to build capacity among the local people. We examined relations between the distance to the nearest human community and sighting rates of each species, and evaluated the program overall. Eighteen wildlife monitors received training in line transect and sign surveys and then conducted surveys along a total of ten transects. Sighting rates of most species in the Piagaçu-Purus Sustainable Development Reserve were higher than those reported in other Amazonian forests. Distance to the human community was not associated with the overall vertebrate sighting rate. Use of the trained monitors was successful in terms of data acquisition and engagement. The involvement of local people promoted discussions about regulation of hunting in the reserve. Implementation of community-based programs to monitor forest wildlife in Amazonian sustainable use reserves may empower local communities and assess the status of wildlife through time.

Guided transect sampling - a new design combining prior information and field surveying

Treesearch

Anna Ringvall; Goran Stahl; Tomas Lamas

2000-01-01

Guided transect sampling is a two-stage sampling design in which prior information is used to guide the field survey in the second stage. In the first stage, broad strips are randomly selected and divided into grid-cells. For each cell a covariate value is estimated from remote sensing data, for example. The covariate is the basis for subsampling of a transect through...

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas

PubMed Central

Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP. PMID:28594836

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas.

PubMed

Prato, Giulia; Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP.

Rifting and subduction in the papuan peninsula, papua new guinea: The significance of the trobriand tough, the nubara strike-slip fault, and the woodlark rift to the present configuration of papua new guinea

NASA Astrophysics Data System (ADS)

Cameron, Milo Louis

The calculated extension (~111 km) across the Woodlark rift is incompatible with the > 130 km needed to exhume the Metamorphic Core Complexes on shallow angle faults (< 30°) using N-S extension in the Woodlark Basin. High resolution bathymetry, seismicity, and seismic reflection data indicate that the Nubara Fault continues west of the Trobriand Trough, intersects the Woodlark spreading center, and forms the northern boundary of the Woodlark plate and the southern boundary of the Trobriand plate. The newly defined Trobriand plate, to the north of this boundary, has moved SW-NE along the right lateral Nubara Fault, creating SW-NE extension in the region bounded by the MCC's of the D'Entrecasteaux Islands and Moresby Seamount. Gravity and bathymetry data extracted along four transect lines were used to model the gravity and flexure across the Nubara Fault boundary. Differences exist in the elastic thickness between the northern and southern parts of the lines at the Metamorphic Core Complexes of Goodenough Island (Te_south = 5.7 x 103 m; Te_north = 6.1 x 103 m) and Fergusson Island (Te_south = 1.2 x 103 m; Te_north = 5.5 x 103 m). Differences in the elastic strength of the lithosphere also exist at Moresby Seamount (Te_south = 4.2 x 103 m; Te_north = 4.7 x 103 m) and Egum Atoll (Te_south =7.5 x 103 m; Te_north = 1.3 x 104 m). The differences between the northern and southern parts of each transect line imply an east-west boundary that is interpreted to be the Nubara Fault. The opening of the Woodlark Basin resulted in the rotation of the Papuan Peninsula and the Woodlark Rise, strike slip motion between the Solomon Sea and the Woodlark Basin at the Nubara Fault, and the formation of the PAC-SOL-WLK; SOL-WLK-TRB triple junctions. The intersection of the Woodlark Spreading Center with the Nubara Fault added the AUS-WLK-TRB triple junction and established the Nubara Fault as the northern boundary of the Woodlark plate.

Results from ISOMIP+ and MISOMIP1, two interrelated marine ice sheet and ocean model intercomparison projects

NASA Astrophysics Data System (ADS)

Asay-Davis, X.; Galton-Fenzi, B.; Gwyther, D.; Jourdain, N.; Martin, D. F.; Nakayama, Y.; Seroussi, H. L.

2016-12-01

MISMIP+ (the third Marine Ice Sheet MIP), ISOMIP+ (the second Ice Shelf-Ocean MIP) and MISOMIP1 (the first Marine Ice Sheet-Ocean MIP) prescribe a set of idealized experiments for marine ice-sheet models, ocean models with ice-shelf cavities, and coupled ice sheet-ocean models, respectively. Here, we present results from ISOMIP+ and MISOMIP1 experiments using several ocean-only and coupled ice sheet-ocean models. Among the ocean models, we show that differences in model behavior are significant enough that similar results can only be achieved by tuning model parameters (the heat- and salt-transfer coefficients across the sub-ice-shelf boundary layer) for each model. This tuning is constrained by a desired mean melt rate in quasi-steady state under specified forcing conditions, akin to tuning the models to match observed melt rates. We compare the evolution of ocean temperature transects, melt rate, friction velocity and thermal driving between ocean models for the five ISOMIP+ experiments (Ocean0-4), which have prescribed ice-shelf topography. We find that melt patterns differ between models based on the relative importance of overturning strength and vertical mixing of temperature even when the models have been tuned to achieve similar melt rates near the grounding line. For the two MISOMIP1 experiments (IceOcean1 without dynamic calving and IceOcean2 with a simple calving parameterization), we compare temperature transects, melt rate, ice-shelf topography and grounded area across models and for several model configurations. Consistent with preliminary results from MISMIP+, we find that for a given coupled model, the use of a Coulomb-limited basal friction parameterization below grounded ice and the application of dynamic calving both significantly increase the rate of grounding-line retreat, whereas the rate of retreat appears to be less sensitive to the ice stress approximation (shallow-shelf approximation, higher-order, etc.). We show that models with similar mean melt rates, stress approximations and basal friction parameterizations produce markedly different rates of grounding-line retreat, and we investigate possible sources of these disparities (e.g. differences in coupling strategy or melt distribution).

Community Structure Of Coral Reefs In Saebus Island, Sumenep District, East Java

NASA Astrophysics Data System (ADS)

Rizmaadi, Mada; Riter, Johannes; Fatimah, Siti; Rifaldi, Riyan; Yoga, Arditho; Ramadhan, Fikri; Ambariyanto, Ambariyanto

2018-02-01

Increasing degradation coral reefs ecosystem has created many concerns. Reduction of this damage can only be done with good and proper management of coral reef ecosystem based on existing condition. The condition of coral reef ecosystem can be determined by assessing its community structure. This study investigates community structure of coral reef ecosystems around Saebus Island, Sumenep District, East Java, by using satellite imagery analysis and field observations. Satellite imagery analysis by Lyzenga methods was used to determine the observation stations and substrate distribution. Field observations were done by using Line Intercept Transect method at 4 stations, at the depth of 3 and 10 meters. The results showed that the percentage of coral reef coverage at the depth of 3 and 10 meters were 64.36% and 59.29%, respectively, and included in fine coverage category. This study found in total 25 genera from 13 families of corals at all stations. The most common species found were Acropora, Porites, and Pocillopora, while the least common species were Favites and Montastrea. Average value of Diversity, Uniformity and Dominancy indices were 2.94, 0.8 and 0.18 which include as medium, high, and low category, respectively. These results suggest that coral reef ecosystems around Saebus Island is in a good condition.

Determinants of Vaccination Coverage and Consequences for Rabies Control in Bali, Indonesia.

PubMed

Arief, Riana A; Hampson, Katie; Jatikusumah, Andri; Widyastuti, Maria D W; Sunandar; Basri, Chaerul; Putra, Anak A G; Willyanto, Iwan; Estoepangestie, Agnes T S; Mardiana, I W; Kesuma, I K G N; Sumantra, I P; Doherty, Paul F; Salman, M D; Gilbert, Jeff; Unger, Fred

2016-01-01

Maintaining high vaccination coverage is key to successful rabies control, but mass dog vaccination can be challenging and population turnover erodes coverage. Declines in rabies incidence following successive island-wide vaccination campaigns in Bali suggest that prospects for controlling and ultimately eliminating rabies are good. Rabies, however, has continued to circulate at low levels. In the push to eliminate rabies from Bali, high coverage needs to be maintained across all areas of the island. We carried out door-to-door (DTD) questionnaire surveys ( n  = 10,352 dog-owning households) and photographic mark-recapture surveys (536 line transects, 2,597 observations of free-roaming dogs) in 2011-2012 to estimate dog population sizes and assess rabies vaccination coverage and dog demographic characteristics in Bali, Indonesia. The median number of dogs per subvillage unit ( banjar ) was 43 (range 0-307) for owned dogs estimated from the DTD survey and 17 (range 0-83) for unconfined dogs (including both owned and unowned) from transects. Vaccination coverage of owned dogs was significantly higher in adults (91.4%) compared to juveniles (<1 year, 43.9%), likely due to insufficient targeting of pups and from puppies born subsequent to vaccination campaigns. Juveniles had a 10-70 times greater risk of not being vaccinated in urban, suburban, and rural areas [combined odds ratios (ORs): 9.9-71.1, 95% CI: 8.6-96.0]. Free-roaming owned dogs were also 2-3 times more likely to be not vaccinated compared to those confined (combined Ors: 1.9-3.6, 95% CI: 1.4-5.4), with more dogs being confined in urban (71.2%) than in suburban (16.1%) and rural areas (8.0%). Vaccination coverage estimates from transects were also much lower (30.9%) than household surveys (83.6%), possibly due to loss of collars used to identify the vaccination status of free-roaming dogs, but these unconfined dogs may also include dogs that were unowned or more difficult to vaccinate. Overall, coverage levels were high in the owned dog population, but for future campaigns in Bali to have the highest chance of eliminating rabies, concerted effort should be made to vaccinate free-roaming dogs particularly in suburban and rural areas, with advertising to ensure that owners vaccinate pups. Long-lasting, cheap, and quick methods are needed to mark vaccinated animals and reassure communities of the reach of vaccination campaigns.

Determinants of Vaccination Coverage and Consequences for Rabies Control in Bali, Indonesia

PubMed Central

Arief, Riana A.; Hampson, Katie; Jatikusumah, Andri; Widyastuti, Maria D. W.; Sunandar; Basri, Chaerul; Putra, Anak A. G.; Willyanto, Iwan; Estoepangestie, Agnes T. S.; Mardiana, I. W.; Kesuma, I. K. G. N.; Sumantra, I. P.; Doherty, Paul F.; Salman, M. D.; Gilbert, Jeff; Unger, Fred

2017-01-01

Maintaining high vaccination coverage is key to successful rabies control, but mass dog vaccination can be challenging and population turnover erodes coverage. Declines in rabies incidence following successive island-wide vaccination campaigns in Bali suggest that prospects for controlling and ultimately eliminating rabies are good. Rabies, however, has continued to circulate at low levels. In the push to eliminate rabies from Bali, high coverage needs to be maintained across all areas of the island. We carried out door-to-door (DTD) questionnaire surveys (n = 10,352 dog-owning households) and photographic mark–recapture surveys (536 line transects, 2,597 observations of free-roaming dogs) in 2011–2012 to estimate dog population sizes and assess rabies vaccination coverage and dog demographic characteristics in Bali, Indonesia. The median number of dogs per subvillage unit (banjar) was 43 (range 0–307) for owned dogs estimated from the DTD survey and 17 (range 0–83) for unconfined dogs (including both owned and unowned) from transects. Vaccination coverage of owned dogs was significantly higher in adults (91.4%) compared to juveniles (<1 year, 43.9%), likely due to insufficient targeting of pups and from puppies born subsequent to vaccination campaigns. Juveniles had a 10–70 times greater risk of not being vaccinated in urban, suburban, and rural areas [combined odds ratios (ORs): 9.9–71.1, 95% CI: 8.6–96.0]. Free-roaming owned dogs were also 2–3 times more likely to be not vaccinated compared to those confined (combined Ors: 1.9–3.6, 95% CI: 1.4–5.4), with more dogs being confined in urban (71.2%) than in suburban (16.1%) and rural areas (8.0%). Vaccination coverage estimates from transects were also much lower (30.9%) than household surveys (83.6%), possibly due to loss of collars used to identify the vaccination status of free-roaming dogs, but these unconfined dogs may also include dogs that were unowned or more difficult to vaccinate. Overall, coverage levels were high in the owned dog population, but for future campaigns in Bali to have the highest chance of eliminating rabies, concerted effort should be made to vaccinate free-roaming dogs particularly in suburban and rural areas, with advertising to ensure that owners vaccinate pups. Long-lasting, cheap, and quick methods are needed to mark vaccinated animals and reassure communities of the reach of vaccination campaigns. PMID:28119919

Circumferential suture technique for esophageal transection to treat esophageal variceal bleeding.

PubMed

Jeng, L B; Chen, M F

1993-01-01

The EEA stapler has been used routinely for esophageal transection to treat esophageal variceal bleeding for some time. It carries the risk of postoperative leakage and is not suitable in those cases receiving recent sclerotherapy. The circumferential suture technique presented in this paper can be used in any situation requiring esophageal transection. It has been utilized by us in twenty-two emergent cases with good results.

A Brain-Machine-Muscle Interface for Restoring Hindlimb Locomotion after Complete Spinal Transection in Rats

PubMed Central

Alam, Monzurul; Chen, Xi; Zhang, Zicong; Li, Yan; He, Jufang

2014-01-01

A brain-machine interface (BMI) is a neuroprosthetic device that can restore motor function of individuals with paralysis. Although the feasibility of BMI control of upper-limb neuroprostheses has been demonstrated, a BMI for the restoration of lower-limb motor functions has not yet been developed. The objective of this study was to determine if gait-related information can be captured from neural activity recorded from the primary motor cortex of rats, and if this neural information can be used to stimulate paralysed hindlimb muscles after complete spinal cord transection. Neural activity was recorded from the hindlimb area of the primary motor cortex of six female Sprague Dawley rats during treadmill locomotion before and after mid-thoracic transection. Before spinal transection there was a strong association between neural activity and the step cycle. This association decreased after spinal transection. However, the locomotive state (standing vs. walking) could still be successfully decoded from neural recordings made after spinal transection. A novel BMI device was developed that processed this neural information in real-time and used it to control electrical stimulation of paralysed hindlimb muscles. This system was able to elicit hindlimb muscle contractions that mimicked forelimb stepping. We propose this lower-limb BMI as a future neuroprosthesis for human paraplegics. PMID:25084446

Laparoscopic repair of hernia in children: Comparison between ligation and nonligation of sac.

PubMed

Pant, Nitin; Aggarwal, Satish Kumar; Ratan, Simmi K

2014-04-01

The essence of the current techniques of laparoscopic hernia repair in children is suture ligation of the neck of the hernia sac at the deep ring with or without its transection. Some studies show that during open hernia repair, after transection at the neck it can be left unsutured without any consequence. This study was aimed to see if the same holds true for laparoscopic hernia repair. Sixty patients (52 boys and eight girls, 12-144 months) with indirect inguinal hernia were randomized for laparoscopic repair either by transection of the sac alone (Group I) or transection plus suture ligation of sac at the neck (Group II). Outcome was assessed in terms of time taken for surgery, recurrence, and other complications. Thirty-eight hernia units in 28 patients were repaired by transection alone (Group I) and 34 hernia units in 29 patients were repaired by transection and suture ligation (Group II). Three patients were found to have no hernia on laparoscopy. Recurrence rate and other complications were not significantly different in the two groups. All recurrences occurred in hernias with ring size more than 10 mm. Laparoscopic repair of hernia by circumferential incision of the peritoneum at the deep ring is as effective as incision plus ligation of the sac.

A brain-machine-muscle interface for restoring hindlimb locomotion after complete spinal transection in rats.

PubMed

Alam, Monzurul; Chen, Xi; Zhang, Zicong; Li, Yan; He, Jufang

2014-01-01

A brain-machine interface (BMI) is a neuroprosthetic device that can restore motor function of individuals with paralysis. Although the feasibility of BMI control of upper-limb neuroprostheses has been demonstrated, a BMI for the restoration of lower-limb motor functions has not yet been developed. The objective of this study was to determine if gait-related information can be captured from neural activity recorded from the primary motor cortex of rats, and if this neural information can be used to stimulate paralysed hindlimb muscles after complete spinal cord transection. Neural activity was recorded from the hindlimb area of the primary motor cortex of six female Sprague Dawley rats during treadmill locomotion before and after mid-thoracic transection. Before spinal transection there was a strong association between neural activity and the step cycle. This association decreased after spinal transection. However, the locomotive state (standing vs. walking) could still be successfully decoded from neural recordings made after spinal transection. A novel BMI device was developed that processed this neural information in real-time and used it to control electrical stimulation of paralysed hindlimb muscles. This system was able to elicit hindlimb muscle contractions that mimicked forelimb stepping. We propose this lower-limb BMI as a future neuroprosthesis for human paraplegics.

Calpains mediate axonal cytoskeleton disintegration during Wallerian degeneration

PubMed Central

Ma, Marek; Ferguson, Toby A.; Schoch, Kathleen M.; Li, Jian; Qian, Yaping; Shofer, Frances S.; Saatman, Kathryn E.; Neumar, Robert W.

2013-01-01

In both the central nervous system (CNS) and peripheral nervous system (PNS), transected axons undergo Wallerian degeneration. Even though Augustus Waller first described this process after transection of axons in 1850, the molecular mechanisms may be shared, at least in part, by many human diseases. Early pathology includes failure of synaptic transmission, target denervation, and granular disintegration of the axonal cytoskeleton (GDC). The Ca2+-dependent proteases calpains have been implicated in GDC but causality has not been established. To test the hypothesis that calpains play a causal role in axonal and synaptic degeneration in vivo, we studied transgenic mice that express human calpastatin (hCAST), the endogenous calpain inhibitor, in optic and sciatic nerve axons. Five days after optic nerve transection and 48 hours after sciatic nerve transection, robust neurofilament proteolysis observed in wild-type controls was reduced in hCAST transgenic mice. Protection of the axonal cytoskeleton in sciatic nerves of hCAST mice was nearly complete 48 hours post-transection. In addition, hCAST expression preserved the morphological integrity of neuromuscular junctions. However, compound muscle action potential amplitudes after nerve transection were similar in wild-type and hCAST mice. These results, in total, provide direct evidence that calpains are responsible for the morphological degeneration of the axon and synapse during Wallerian degeneration. PMID:23542511

Seismic Reflection Transect across the Central Iberian Zone (Iberian Massif): The ALCUDIA project

NASA Astrophysics Data System (ADS)

Carbonell, R.; Simancas, F.; Martinez-Poyatos, D.; Ayarza, P.; Gonzalez, P.; Tejero, R.; Martín-Parra, L.; Matas, J.; Gonzalez-Lodeiro, F.; Pérez-Estaún, A.; García-Lobon, J.; Mansilla, L.; Palomeras, I.

2007-12-01

The lithosphere of the Central Iberian Zone (CIZ) differs from that of the southwestern Iberian Massif. They are limited by a suture zone. The seismic reflection profile IBERSEIS suggested that the activity of a Carboniferous mantle plume resulted in abundant intrusions of mafic magmas in the mid-to-lower crust which resulted in a singular crustal evolution. The current knowledge of the area based mostly in surface geological mapping suggests that basic magmatism continues further towards the north, indicating that the mantle plume may have affected a bigger area up to the Tajo depression. Furthermore, the existence of the Almadén mine, one of the largest mercury mine in the world within the CIZ, favour that the crust in this area is the result of anomalous lithospheric processes. Accordingly, the ALCUDIA project has been lauched aiming to study the structure and nature of the lithosphere of the CIZ. It includes the acquisition of a deep high resolution seismic reflection transect, detailed geological mapping, kinematic, petrologic and geochemical studies, and other geophysical studies (potential field methods). This new profile extends the previous IBERSEIS Transect towards the northeast, completing almost 600 km of deep seismic profiles, crossing the southern half of the Iberian Variscides. The transect crosses some important structures, such as the Toledo fault, Santa Elena Fault, Alcudia anticline, Almadén syncline, and some major magnetic anomalies. The preliminary results reveal that the crust is 30 km thick in average, with a horizontal Moho, a highly reflective mid-to-lower crust with a few mantle reflectors and well defined features in the upper crust with the indication of detachments zones that might link to the mid- crustal reflective zone.

Controls on compound specific 2H/1H of leaf waxes along a North American monsoonal transect

NASA Astrophysics Data System (ADS)

Berke, M. A.; Tipple, B. J.; Hambach, B.; Ehleringer, J. R.

2013-12-01

The use of hydrogen isotope ratios of sedimentary n-alkanes from leaf waxes has become an important method for the reconstruction of paleohydrologic conditions. Ideally, the relationship between lipid 2H/1H values and source water is one-to-one. But the extent to which the 2H/1H values are altered between initial source water and lipid 2H/1H values varies by plant type and environment. Additionally, these variables may be confounded by use of varied source waters by plants in the same ecosystem. Here, we use a transect study across the arid southwestern landscape of the United States, which is heavily influenced by the North American Monsoon, to study the variability in 2H/1H values of leaf waxes in co-occurring plants from Tucson, Arizona to Salt Lake City, Utah. Perennials, including rabbit brush (Chrysothamnus nauseosus), sagebrush (Artemisia tridentata), and gambel oak (Quercus gambelii) and an annual plant, sunflower (Helianthus annuus), were chosen for their wide geographic distribution along the entire transect. Our results indicate that n-alkane distribution for each plant was similar and generally showed no relationship to environmental variables (elevation, mean annual precipitation, latitude, and temperature). However, we find evidence of n-alkane 2H/1H value relating to transect latitude, a relationship that is weaker for all samples combined than the strong individual correlation for each plant species. Further, these 2H/1H values suggest that not all plants in the monsoon region utilize monsoon-delivered precipitation. These results imply an adaptation to discontinuous spatial coverage and amount of monsoonal precipitation and suggest care must be taken when assuming consistent source water for different plants, particularly in regions with highly seasonal precipitation delivery.

Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark)

NASA Astrophysics Data System (ADS)

Flury, Sabine; Røy, Hans; Dale, Andrew W.; Fossing, Henrik; Tóth, Zsuzsanna; Spiess, Volkhard; Jensen, Jørn Bo; Jørgensen, Bo Barker

2016-09-01

Shallow gas accumulates in coastal marine sediments when the burial rate of reactive organic matter beneath the sulfate zone is sufficiently high and the methanogenic zone is sufficiently deep. We investigated the controls on methane production and free methane gas accumulation along a 400 m seismo-acoustic transect across a sharp transition from gas-free into gas-bearing sediment in Aarhus Bay (Denmark). Twelve gravity cores were taken, in which the pore water was analyzed for inorganic solutes while rates of organic carbon mineralization were measured experimentally by 35SO42- radiotracer method. The thickness of organic-rich Holocene mud increased from 5 to 10 m along the transect concomitant with a shallowing of the depth of the sulfate-methane transition from >4 m to 2.5 m. In spite of drastic differences in the distribution of methane and sulfate in the sediment along the transect, there were only small differences in total mineralization, and methanogenesis was only equivalent to about 1% of sulfate reduction. Shallow gas appeared where the mud thickness exceeded 8-9 m. Rates of methanogenesis increased along the transect as did the upward diffusive flux of methane. Interestingly, the increase in the sedimentation rate and Holocene mud thickness had only a modest direct effect on methanogenesis rates in deep sediments. This increase in methane flux, however, triggered a shallowing of the sulfate-methane transition which resulted in a large increase in methanogenesis at the top of the methanogenic zone. Thus, our results demonstrate a positive feedback mechanism that causes a strong enhancement of methanogenesis and explains the apparently abrupt appearance of gas when a threshold thickness of organic-rich mud is exceeded.

Geophysical Investigation of a Thermokarst Lake Talik in Continuous Permafrost

NASA Astrophysics Data System (ADS)

Creighton, A.; Parsekian, A.; Arp, C. D.; Jones, B. M.; Babcock, E.; Bondurant, A. C.

2016-12-01

On the Arctic Coastal Plain (ACP) of northern Alaska, shallow thermokarst lakes cover up to 25% of the landscape. These lakes occupy depressions created by the subsidence of thawed, ice-rich permafrost. Areas of unfrozen sediment, or taliks, can form under lakes that have a mean annual bottom temperature greater than 0°C. The geometry of these taliks, as well as the processes that create them, are important for understanding interactions between surface water, groundwater, and carbon cycling. Non-invasive geophysical methods are a useful means to study talik sediments as borehole studies yield few data points, and the contrast between unfrozen and frozen sediments is an ideal geophysical target. To study talik configuration associated with an actively expanding thermokarst lake, we conducted a geophysical transect across Peatball Lake. This lake has an estimated initiation age of 1400 calendar years BP. Over the past 60 years, lake surface area has increased through thermal and mechanical shoreline erosion. A talik of previously unknown thickness likely exists below Peatball Lake. We conducted a transect of transient electromagnetic soundings across the lake extending into the surrounding terrestrial environment. Since permafrost has relatively high resistivity compared to talik sediments, the interpreted electrical structure of the subsurface likely reflects talik geometry. We also conducted nuclear magnetic resonance soundings at representative locations along the transect. These measurements can provide data on sub-lake sediment properties including water content. Together, these measurements resolve the talik structure across the lake transect and showed evidence of varying talik thicknesses from the lake edge to center. These is no evidence of a talik at the terrestrial control sites. These results can help constrain talik development models and thus provide insight into Arctic and permafrost processes in the face of a changing climate.

Biomechanical Outcomes After Bio-enhanced Anterior Cruciate Ligament Repair and Anterior Cruciate Ligament Reconstruction Are Equal in a Porcine Model

PubMed Central

Vavken, Patrick; Fleming, Braden C.; Mastrangelo, Ashley N.; Machan, Jason T.; Murray, Martha M.

2011-01-01

Purpose The objective of this study was to compare the biomechanical outcomes of a new method of anterior cruciate ligament (ACL) treatment, bio-enhanced ACL repair, with ACL reconstruction in a large animal model. Methods Twenty-four skeletally immature pigs underwent unilateral ACL transection and were randomly allocated to receive bio-enhanced ACL repair with a collagen-platelet composite, allograft (bone–patellar tendon– bone) reconstruction, or no further treatment (n = 8 for each group). The structural properties and anteroposterior laxity of the experimental and contralateral ACL-intact knees were measured 15 weeks postoperatively. All dependent variables were normalized to those of the contralateral knee and compared by use of generalized linear mixed models. Results After 15 weeks, bio-enhanced ACL repair and ACL reconstruction produced superior biomechanical outcomes to ACL transection. However, there were no significant differences between bio-enhanced ACL repair and ACL reconstruction for maximum load (P = .4745), maximum displacement (P = .4217), or linear stiffness (P = .6327). There were no significant differences between the 2 surgical techniques in anteroposterior laxity at 30° (P = .7947), 60° (P = .6270), or 90° (P = .9008). Conclusions Bio-enhanced ACL repair produced biomechanical results that were not different from ACL reconstruction in a skeletally immature, large animal model, although the variability associated with both procedures was large. Both procedures produced significantly improved results over ACL transection, showing that both were effective in this model. Clinical Relevance Bio-enhanced ACL repair may 1 day provide an alternative treatment option for ACL injury. PMID:22261137

Heat tracing to determine spatial patterns of hyporheic exchange across a river transect

NASA Astrophysics Data System (ADS)

Lu, Chengpeng; Chen, Shuai; Zhang, Ying; Su, Xiaoru; Chen, Guohao

2017-09-01

Significant spatial variability of water fluxes may exist at the water-sediment interface in river channels and has great influence on a variety of water issues. Understanding the complicated flow systems controlling the flux exchanges along an entire river is often limited due to averaging of parameters or the small number of discrete point measurements usually used. This study investigated the spatial pattern of the hyporheic flux exchange across a river transect in China, using the heat tracing approach. This was done with measurements of temperature at high spatial resolution during a 64-h monitoring period and using the data to identify the spatial pattern of the hyporheic exchange flux with the aid of a one-dimensional conduction-advection-dispersion model (VFLUX). The threshold of neutral exchange was considered as 126 L m-2 d-1 in this study and the heat tracing results showed that the change patterns of vertical hyporheic flux varied with buried depth along the river transect; however, the hyporheic flux was not simply controlled by the streambed hydraulic conductivity and water depth in the river transect. Also, lateral flow dominated the hyporheic process within the shallow high-permeability streambed, while the vertical flow was dominant in the deep low-permeability streambed. The spatial pattern of hyporheic exchange across the river transect was naturally controlled by the heterogeneity of the streambed and the bedform of the stream cross-section. Consequently, a two-dimensional conceptual illustration of the hyporheic process across the river transect is proposed, which could be applicable to river transects of similar conditions.

Chondroprotective effects of zoledronic acid on articular cartilage in dogs with experimentally induced osteoarthritis.

PubMed

Dearmin, Michael G; Trumble, Troy N; García, Anapatricia; Chambers, Jon N; Budsberg, Steven C

2014-04-01

To assess effects of zoledronic acid on biomarkers, radiographic scores, and gross articular cartilage changes in dogs with induced osteoarthritis. 21 purpose-bred hound-type dogs. The left stifle joint of each dog was examined arthroscopically to determine initial articular cartilage status, which was followed by cranial cruciate ligament (CrCL) transection to induce osteoarthritis. Dogs were assigned to 3 groups (control group, low dose [10 μg of zoledronic acid/kg], or high dose [25 μg of zoledronic acid/kg). Treatments were administered SC every 3 months for 1 year beginning the day after CrCL transection. Serum and synovial fluid samples and radiographs were obtained 0, 1, 3, 6, 9, and 12 months after transection. At 12 months, each joint was scored for cartilage defects. Serum and synovial fluid biomarkers of bone and cartilage turnover (bone-specific alkaline phosphatase, type I and II collagen, carboxy-propeptide of type II collagen, and chondroitin sulfate 846) were analyzed with ELISAs. The high-dose group had fewer total articular defects and lower severity scores in CrCL-transected stifle joints than did the control group. In addition, the high-dose group had significantly less change in collagenase cleavage of type I or II collagen in the synovial fluid at 1 and 3 months after CrCL transection than did the control group and also had greater changes in bone-specific alkaline phosphatase in synovial fluid at 3 months after CrCL transection than did the control group. Zoledronic acid had a chondroprotective effect in dogs with a transected CrCL.

Focal Experimental Injury Leads to Widespread Gene Expression and Histologic Changes in Equine Flexor Tendons

PubMed Central

Jacobsen, Else; Dart, Andrew J.; Mondori, Takamitsu; Horadogoda, Neil; Jeffcott, Leo B.; Little, Christopher B.; Smith, Margaret M.

2015-01-01

It is not known how extensively a localised flexor tendon injury affects the entire tendon. This study examined the extent of and relationship between histopathologic and gene expression changes in equine superficial digital flexor tendon after a surgical injury. One forelimb tendon was hemi-transected in six horses, and in three other horses, one tendon underwent a sham operation. After euthanasia at six weeks, transected and control (sham and non-operated contralateral) tendons were regionally sampled (medial and lateral halves each divided into six 3cm regions) for histologic (scoring and immunohistochemistry) and gene expression (real time PCR) analysis of extracellular matrix changes. The histopathology score was significantly higher in transected tendons compared to control tendons in all regions except for the most distal (P ≤ 0.03) with no differences between overstressed (medial) and stress-deprived (lateral) tendon halves. Proteoglycan scores were increased by transection in all but the most proximal region (P < 0.02), with increased immunostaining for aggrecan, biglycan and versican. After correcting for location within the tendon, gene expression for aggrecan, versican, biglycan, lumican, collagen types I, II and III, MMP14 and TIMP1 was increased in transected tendons compared with control tendons (P < 0.02) and decreased for ADAMTS4, MMP3 and TIMP3 (P < 0.001). Aggrecan, biglycan, fibromodulin, and collagen types I and III expression positively correlated with all histopathology scores (P < 0.001), whereas lumican, ADAMTS4 and MMP14 expression positively correlated only with collagen fiber malalignment (P < 0.001). In summary, histologic and associated gene expression changes were significant and widespread six weeks after injury to the equine SDFT, suggesting rapid and active development of tendinopathy throughout the entire length of the tendon. These extensive changes distant to the focal injury may contribute to poor functional outcomes and re-injury in clinical cases. Our data suggest that successful treatments of focal injuries will need to address pathology in the entire tendon, and that better methods to monitor the development and resolution of tendinopathy are required. PMID:25837713

[Diagnosis and treatment of strabismus caused by nasal endoscopic surgery].

PubMed

Ai, L K; Wu, X; Wang, J N; Li, J; Wu, Y; Zhou, J; Song, W X; Guo, R L

2017-12-11

Objective: Strabismus with diplopia is the main orbital complication of functional endoscopic sinus surgery (FESS). This study was to analyze clinical findings, treatment and outcomes of such cases. Methods: Retrospective case series. Twenty-three cases were divided into 3 groups based on the disease severity: group A, partial transection of the medial rectus muscle, group B, complete transection of the medical rectus, group C, transection of the medial rectus combined with the other orbital injuries. Complete ophthalmology examinations, including eye alignment, eye motility, force duction test, force generation test, general eye exam, and medical imaging (orbital CT or MRI), were performed for each case. The treatment included botulinum toxin (Botox) injection to the lateral rectus muscle, transposition of the vertical rectus muscle, and orbital surgery if needed. Results: In group A with Botox injection, all the cases achieved single vision in primary position, but still remained some adduction weakness. In group B treated by vertical transposition surgery combined with Botox, 22% of the cases got single vision in primary gaze. In group C, even with more efforts of treatment, the cases with orbital injury can only get cosmetic improvement, and diplopia and adduction dysfunction were found in most cases. Conclusions: Due to the variety of the complications of FESS, force duction test is a crucial exam to detect the direction and severity of synechia in the orbit, which will give solid information to surgery approach as well as prognosis. Botox injection at early stage will minimize the contraction of antagonist lateral rectus, helping to postpone the transposition surgery which may cause anterior segment ischemia when performed right after the medial rectus transection injury. Botox may even reduce the synechia by minimizing the scarring process. Partial vertical rectus transposition combined with muscle resection may effectively correct the eye misalignment in primary gaze and improve eye motility. The prognosis of FESS induced orbital complications is quite related with the severity of the injury. Botox combined with surgery may help medial rectus transection cases to achieve single vision in primary gaze, but when there is any other orbital injury, treatment may only improve cosmetic appearance. (Chin J Ophthalmol, 2017, 53: 917-923) .

Evaluation of remote-sensing techniques to measure decadal-scale changes of Hofsjokull ice cap, Iceland

USGS Publications Warehouse

Hall, D.K.; Williams, R.S.; Barton, J.S.; Sigurdsson, O.; Smith, L.C.; Garvin, J.B.

2000-01-01

Dynamic surficial changes and changes in the position of the firn line and the areal extent of Hofsjökull ice cap, Iceland, were studied through analysis of a time series (1973–98) of synthetic-aperture radar (SAR) and Landsat data. A digital elevation model of Hofsjökull, which was constructed using SAR interferometry, was used to plot the SAR backscatter coefficient (σ°) vs elevation and air temperature along transects across the ice cap. Seasonal and daily σ° patterns are caused by freezing or thawing of the ice-cap surface, and abrupt changes in σ° are noted when the air temperature ranges from ∼−5° to 0°C. Late-summer 1997 σ° (SAR) and reflectance (Landsat) boundaries agree and appear to be coincident with the firn line and a SAR σ° boundary that can be seen in the January 1998 SAR image. In January 1994 through 1998, the elevation of this σ° boundary on the ice capwas quite stable, ranging from 1000 to 1300 m, while the equilibrium-line altitude, as measured on the ground, varied considerably. Thus the equilibrium line may be obscured by firn from previous years. Techniques are established to measure long-term changes in the elevation of the firn line and changes in the position of the ice margin.

Evaluating environmental drivers of spatial variability in free-living nematode assemblages along the Portuguese margin

NASA Astrophysics Data System (ADS)

Lins, Lidia; Leliaert, Frederik; Riehl, Torben; Pinto Ramalho, Sofia; Alfaro Cordova, Eliana; Morgado Esteves, André; Vanreusel, Ann

2017-02-01

Understanding processes responsible for shaping biodiversity patterns on continental margins is an important requirement for comprehending anthropogenic impacts in these environments and further management of biodiversity. Continental margins perform crucial functions linked to key ecological processes which are mainly structured by surface primary productivity and particulate organic matter flux to the seafloor, but also by heterogeneity in seafloor characteristics. However, to what extent these processes control local and regional biodiversity remains unclear. In this study, two isobathic parallel transects located at the shelf break (300-400 m) and upper slope (1000 m) of the western Iberian margin were used to test how food input and sediment heterogeneity affect nematode diversity independently from the spatial factors geographical distance and water depth. We also examined the potential role of connectedness between both depth transects through molecular phylogenetic analyses. Regional generic diversity and turnover were investigated at three levels: within a station, between stations from the same depth transect, and between transects. High variability in food availability and high sediment heterogeneity at the shelf-break transect were directly linked to high diversity within stations and higher variation in community structure across stations compared to the upper slope transect. Contrastingly, environmental factors (food availability and sediment) did not vary significantly between stations located at the upper slope, and this lack of differences were also reflected in a low community turnover between these deeper stations. Finally, differences in nematode communities between both transects were more pronounced than differences within each of the isobathic transects, but these changes were paralleled by the previously mentioned environmental changes. These results suggest that changes in community structure are mainly dictated by environmental factors rather than spatial differences at the western Iberian margin. Furthermore, phylogenetic relationships revealed no evidence for depth-endemic lineages, indicating regular species interchanges across different depths.

Quantifying habitat impacts of natural gas infrastructure to facilitate biodiversity offsetting

PubMed Central

Jones, Isabel L; Bull, Joseph W; Milner-Gulland, Eleanor J; Esipov, Alexander V; Suttle, Kenwyn B

2014-01-01

Habitat degradation through anthropogenic development is a key driver of biodiversity loss. One way to compensate losses is “biodiversity offsetting” (wherein biodiversity impacted is “replaced” through restoration elsewhere). A challenge in implementing offsets, which has received scant attention in the literature, is the accurate determination of residual biodiversity losses. We explore this challenge for offsetting gas extraction in the Ustyurt Plateau, Uzbekistan. Our goal was to determine the landscape extent of habitat impacts, particularly how the footprint of “linear” infrastructure (i.e. roads, pipelines), often disregarded in compensation calculations, compares with “hub” infrastructure (i.e. extraction facilities). We measured vegetation cover and plant species richness using the line-intercept method, along transects running from infrastructure/control sites outward for 500 m, accounting for wind direction to identify dust deposition impacts. Findings from 24 transects were extrapolated to the broader plateau by mapping total landscape infrastructure network using GPS data and satellite imagery. Vegetation cover and species richness were significantly lower at development sites than controls. These differences disappeared within 25 m of the edge of the area physically occupied by infrastructure. The current habitat footprint of gas infrastructure is 220 ± 19 km2 across the Ustyurt (total ∼ 100,000 km2), 37 ± 6% of which is linear infrastructure. Vegetation impacts diminish rapidly with increasing distance from infrastructure, and localized dust deposition does not conspicuously extend the disturbance footprint. Habitat losses from gas extraction infrastructure cover 0.2% of the study area, but this reflects directly eliminated vegetation only. Impacts upon fauna pose a more difficult determination, as these require accounting for behavioral and demographic responses to disturbance by elusive mammals, including threatened species. This study demonstrates that impacts of linear infrastructure in regions such as the Ustyurt should be accounted for not just with respect to development sites but also associated transportation and delivery routes. PMID:24455163

Quantifying habitat impacts of natural gas infrastructure to facilitate biodiversity offsetting.

PubMed

Jones, Isabel L; Bull, Joseph W; Milner-Gulland, Eleanor J; Esipov, Alexander V; Suttle, Kenwyn B

2014-01-01

Habitat degradation through anthropogenic development is a key driver of biodiversity loss. One way to compensate losses is "biodiversity offsetting" (wherein biodiversity impacted is "replaced" through restoration elsewhere). A challenge in implementing offsets, which has received scant attention in the literature, is the accurate determination of residual biodiversity losses. We explore this challenge for offsetting gas extraction in the Ustyurt Plateau, Uzbekistan. Our goal was to determine the landscape extent of habitat impacts, particularly how the footprint of "linear" infrastructure (i.e. roads, pipelines), often disregarded in compensation calculations, compares with "hub" infrastructure (i.e. extraction facilities). We measured vegetation cover and plant species richness using the line-intercept method, along transects running from infrastructure/control sites outward for 500 m, accounting for wind direction to identify dust deposition impacts. Findings from 24 transects were extrapolated to the broader plateau by mapping total landscape infrastructure network using GPS data and satellite imagery. Vegetation cover and species richness were significantly lower at development sites than controls. These differences disappeared within 25 m of the edge of the area physically occupied by infrastructure. The current habitat footprint of gas infrastructure is 220 ± 19 km(2) across the Ustyurt (total ∼ 100,000 km(2)), 37 ± 6% of which is linear infrastructure. Vegetation impacts diminish rapidly with increasing distance from infrastructure, and localized dust deposition does not conspicuously extend the disturbance footprint. Habitat losses from gas extraction infrastructure cover 0.2% of the study area, but this reflects directly eliminated vegetation only. Impacts upon fauna pose a more difficult determination, as these require accounting for behavioral and demographic responses to disturbance by elusive mammals, including threatened species. This study demonstrates that impacts of linear infrastructure in regions such as the Ustyurt should be accounted for not just with respect to development sites but also associated transportation and delivery routes.

Integrating auxiliary data and geophysical techniques for the estimation of soil clay content using CHAID algorithm

NASA Astrophysics Data System (ADS)

Abbaszadeh Afshar, Farideh; Ayoubi, Shamsollah; Besalatpour, Ali Asghar; Khademi, Hossein; Castrignano, Annamaria

2016-03-01

This study was conducted to estimate soil clay content in two depths using geophysical techniques (Ground Penetration Radar-GPR and Electromagnetic Induction-EMI) and ancillary variables (remote sensing and topographic data) in an arid region of the southeastern Iran. GPR measurements were performed throughout ten transects of 100 m length with the line spacing of 10 m, and the EMI measurements were done every 10 m on the same transect in six sites. Ten soil cores were sampled randomly in each site and soil samples were taken from the depth of 0-20 and 20-40 cm, and then the clay fraction of each of sixty soil samples was measured in the laboratory. Clay content was predicted using three different sets of properties including geophysical data, ancillary data, and a combination of both as inputs to multiple linear regressions (MLR) and decision tree-based algorithm of Chi-Squared Automatic Interaction Detection (CHAID) models. The results of the CHAID and MLR models with all combined data showed that geophysical data were the most important variables for the prediction of clay content in two depths in the study area. The proposed MLR model, using the combined data, could explain only 0.44 and 0.31% of the total variability of clay content in 0-20 and 20-40 cm depths, respectively. Also, the coefficient of determination (R2) values for the clay content prediction, using the constructed CHAID model with the combined data, was 0.82 and 0.76 in 0-20 and 20-40 cm depths, respectively. CHAID models, therefore, showed a greater potential in predicting soil clay content from geophysical and ancillary data, while traditional regression methods (i.e. the MLR models) did not perform as well. Overall, the results may encourage researchers in using georeferenced GPR and EMI data as ancillary variables and CHAID algorithm to improve the estimation of soil clay content.

Facial Nerve Repair: Fibrin Adhesive Coaptation versus Epineurial Suture Repair in a Rodent Model

PubMed Central

Knox, Christopher J.; Hohman, Marc H.; Kleiss, Ingrid J.; Weinberg, Julie S.; Heaton, James T.; Hadlock, Tessa A.

2013-01-01

Objectives/Hypothesis Repair of the transected facial nerve has traditionally been accomplished with microsurgical neurorrhaphy; however, fibrin adhesive coaptation (FAC) of peripheral nerves has become increasingly popular over the past decade. We compared functional recovery following suture neurorrhaphy to FAC in a rodent facial nerve model. Study Design Prospective, randomized animal study. Methods Sixteen rats underwent transection and repair of the facial nerve proximal to the pes anserinus. Eight animals underwent epineurial suture (ES) neurorrhaphy, and eight underwent repair with fibrin adhesive (FA). Surgical times were documented for all procedures. Whisking function was analyzed on a weekly basis for both groups across 15 weeks of recovery. Results Rats experienced whisking recovery consistent in time course and degree with prior studies of rodent facial nerve transection and repair. There were no significant differences in whisking amplitude, velocity, or acceleration between suture and FA groups. However, the neurorrhaphy time with FA was 70% shorter than for ES (P < 0.05). Conclusion Although we found no difference in whisking recovery between suture and FA repair of the main trunk of the rat facial nerve, the significantly shorter operative time for FA repair makes this technique an attractive option. The relative advantages of both techniques are discussed. PMID:23188676

A 3D-engineered porous conduit for peripheral nerve repair

PubMed Central

Tao, Jie; Hu, Yu; Wang, Shujuan; Zhang, Jiumeng; Liu, Xuan; Gou, Zhiyuan; Cheng, Hao; Liu, Qianqi; Zhang, Qianqian; You, Shenglan; Gou, Maling

2017-01-01

End-to-end neurorrhaphy is the most commonly used method for treating peripheral nerve injury. However, only 50% of patients can regain useful function after treating with neurorrhaphy. Here, we constructed a 3D-engineered porous conduit to promote the function recovery of the transected peripheral nerve after neurorrhaphy. The conduit that consisted of a gelatin cryogel was prepared by molding with 3D-printed moulds. Due to its porous structure and excellent mechanical properties, this conduit could be collapsed by the mechanical force and resumed its original shape after absorption of normal saline. This shape-memory property allowed a simply surgery process for installing the conduits. Moreover, the biodegradable conduit could prevent the infiltration of fibroblasts and reduce the risk of scar tissue, which could provide an advantageous environment for nerve regeneration. The efficiency of the conduits in assisting peripheral nerve regeneration after neurorrhaphy was evaluated in a rat sciatic nerve transected model. Results indicated that conduits significantly benefitted the recovery of the transected peripheral nerve after end-to-end neurorrhaphy on the static sciatic index (SSI), electrophysiological results and the re-innervation of the gastrocnemius muscle. This work demonstrates a biodegradable nerve conduit that has potentially clinical application in promoting the neurorrhaphy. PMID:28401914

A Comparison of Four Different Beach Profiling Techniques at St Leonards, Victoria - An Example of a Collaborative Stakeholder Research Project

NASA Astrophysics Data System (ADS)

Cox, N. L.; Miner, A. S.; Wynn, N.; Turner, D.

2015-12-01

Many beaches in Australia are under attack from shoreline erosion due rising sea levels and the action of waves. St Leonard's beach, a tourist town on the Victorian coastline, is of concern from this destructive erosion and the threat to the economic stability of the town. The major cause of erosion in this area is related to waves created from strong to gale force north to north-easterly winds. This in turn produces a northerly longshore current along with sediment suspension leading to a negative sediment budget. Ongoing and systematic monitoring of the shoreline movement is important to ensure the coast is understood and effectively managed now and into the future. Coastal land managers and agencies are required to find 'cost-effective' and 'fit-for-purpose' coastal monitoring methodologies which are affordable and efficient. This project forges a collaboration of stakeholders from academia, public sector land manager, local government and the private sector to compare four different methods of obtaining beach profiles. The four methods of obtaining beach profiles used for comparison are: 1. traditional survey method along transects using a total station theodolite, 2. traditional survey method along transects using a builder's grade laser level, 3. a small multi-rotor unmanned aerial vehicle (UAV) to produce a full 3D digital surface model of the study area, and 4. an experimental stationary device to produce a limited 3D model along a designated transect using terrestrial photogrammetric approach via a small GPS enabled camera. Assessment is made by comparing the method's precision, spatial coverage, expertise and equipment requirements/costs, preparation time, field acquisition time, number of people required in the field, post-acquisition processing time, and applicability for community use. Whilst is must be very clearly stated that all methods proved to be successful, the preliminary results of the "workflow and resourcing" assessment ranked the methods in the following order from highest ranking: 1. Laser levelling, 2. Terrestrial Photogrammetry, 3. Total Station, and 4. UAV aerial survey. The outcomes of this collaboration will be of great use to coastal management organisations grappling with the effectiveness of the different types of methods which are available for measuring beach profiles.

Automated quantitative gait analysis during overground locomotion in the rat: its application to spinal cord contusion and transection injuries.

PubMed

Hamers, F P; Lankhorst, A J; van Laar, T J; Veldhuis, W B; Gispen, W H

2001-02-01

Analysis of locomotion is an important tool in the study of peripheral and central nervous system damage. Most locomotor scoring systems in rodents are based either upon open field locomotion assessment, for example, the BBB score or upon foot print analysis. The former yields a semiquantitative description of locomotion as a whole, whereas the latter generates quantitative data on several selected gait parameters. In this paper, we describe the use of a newly developed gait analysis method that allows easy quantitation of a large number of locomotion parameters during walkway crossing. We were able to extract data on interlimb coordination, swing duration, paw print areas (total over stance, and at 20-msec time resolution), stride length, and base of support: Similar data can not be gathered by any single previously described method. We compare changes in gait parameters induced by two different models of spinal cord injury in rats, transection of the dorsal half of the spinal cord and spinal cord contusion injury induced by the NYU or MASCIS device. Although we applied this method to rats with spinal cord injury, the usefulness of this method is not limited to rats or to the investigation of spinal cord injuries alone.

Pteropod Ecology and Physiology in Relation to Natural Variability in Carbonate Chemistry

NASA Astrophysics Data System (ADS)

Lawson, G. L.; Maas, A. E.; Wang, A. Z.; Bergan, A. J.; Wiebe, P. H.; Blanco-Bercial, L.; Lavery, A.; Copley, N. J.

2016-02-01

The thecosomatous pteropods are a group of aragonite-shelled zooplankton thought to be particularly vulnerable to ocean acidification. We seek to gain insight into both basic questions of pteropod biology and potential responses to ocean acidification by combining field sampling with shipboard experimental manipulations, capitalizing on natural spatial variability in modern-day carbonate chemistry between and within the Atlantic and Pacific Oceans. Two cruises were conducted, in 2011 and 2012, along open-ocean transects running between 35 and 50°N in the NW Atlantic and NE Pacific; strong differences in environmental conditions exist between these regions, as well as along the Pacific transect, notably in aragonite compensation and oxygen minimum depths. The transects overlapped with portions of WOCE/CLIVAR lines A20 and P17N and measurements of carbonate chemistry provided insight into rates of chemical change as well as information on the pteropods' chemical environment. The abundance and diversity of pteropods varied substantially within and between the study regions. Depth-stratified net sampling during day and night indicated that multiple pteropod species undertook the typical diel vertical migration employed by many zooplankton species as an anti-predation strategy; the amplitude of this migration differed among species as well as within sub-populations of certain cosmopolitan species found in both oceans. Shipboard experiments of short-duration (<18 hrs, intended to mimic the duration of diel vertical migrations to depth) exposing eight species of pteropod to high CO2 and low O2 found no effect of CO2 alone on metabolic rate and an effect of low O2 or interactive effect of CO2 and O2 only in two Atlantic species not known to naturally encounter low oxygen in their biogeographic range. The implications of these various findings to our understanding of the response of pteropods to environmental change will be discussed.

Black-tailed and white-tailed jackrabbits in the American West: History, ecology, ecological significance, and survey methods

USGS Publications Warehouse

Simes, Matthew; Longshore, Kathleen M.; Nussear, Kenneth E.; Beatty, Greg L.; Brown, David E.; Esque, Todd C.

2015-01-01

Across the western United States, Leporidae are the most important prey item in the diet of Golden Eagles (Aquila chrysaetos). Leporids inhabiting the western United States include black-tailed (Lepus californicus) and white-tailed jackrabbits (Lepus townsendii) and various species of cottontail rabbit (Sylvilagus spp.). Jackrabbits (Lepus spp.) are particularly important components of the ecological and economic landscape of western North America because their abundance influences the reproductive success and population trends of predators such as coyotes (Canis latrans), bobcats (Lynx rufus), and a number of raptor species. Here, we review literature pertaining to black-tailed and white-tailed jackrabbits comprising over 170 published journal articles, notes, technical reports, conference proceedings, academic theses and dissertations, and other sources dating from the late 19th century to the present. Our goal is to present information to assist those in research and management, particularly with regard to protected raptor species (e.g., Golden Eagles), mammalian predators, and ecological monitoring. We classified literature sources as (1) general information on jackrabbit species, (2) black-tailed or (3) white-tailed jackrabbit ecology and natural history, or (4) survey methods. These categories, especially 2, 3, and 4, were further subdivided as appropriate. The review also produced several tables on population trends, food habits, densities within various habitats, and jackrabbit growth and development. Black-tailed and white-tailed jackrabbits are ecologically similar in general behaviors, use of forms, parasites, and food habits, and they are prey to similar predators; but they differ in their preferred habitats. While the black-tailed jackrabbit inhabits agricultural land, deserts, and shrublands, the white-tailed jackrabbit is associated with prairies, alpine tundra, and sagebrush-steppe. Frequently considered abundant, jackrabbit numbers in western North America fluctuate temporally and spatially. We also reviewed methods used to investigate jackrabbit populations, including spotlight line transects, flushing transects, drive counts, pellet plot counts, collections, roadside counts, mark-recapture studies, and radio-telemetry studies. Our review of jackrabbit literature illustrates a number of deficiencies in our understanding of jackrabbits in general. As an example, a detailed quantitative description of habitat preferences is lacking, as is a thorough understanding of sympatric jackrabbit species interactions. Even the existence of the oft-cited jackrabbit “cycle” is a matter of debate. Survey methods generally do not address efficacy or accuracy in measuring jackrabbit density or abundance. In addition, there is a paucity of information about jackrabbits in the Mojave Desert, with no real understanding of home ranges, habitat preferences, and population dynamics or demographics in this region.

QUANTITATIVE STUDY OF CLINAL VARIATION IN Juniperus virginiana USING TERPENOID DATA*

PubMed Central

Flake, Robert H.; Rudloff, Ernst Von; Turner, B. L.

1969-01-01

Nine populations of Juniperus virginiana were sampled at approximately 150-mile intervals along a 1500-mile transect from northeastern Texas to Washington, D.C. Individual plants were examined for terpenoids by gas liquid chromatography and the resulting data analyzed by numerical classification methods using characters weighted according to their estimated variance in the natural populations. The results of the analysis show that these populations of J. virginiana cluster clinally from northeast to southwest, the more homogeneous populations occurring in the Appalachian region of North America; the more divergent populations found in progressively more distant regions, as measured along the transect from the northeast toward the southwest. No biochemical evidence could be found to support the hypothesis that hybridization with J. ashei might be causing this variability, as had been widely supposed previously. PMID:16591792

Characterization of bulbospongiosus muscle reflexes activated by urethral distension in male rats.

PubMed

Tanahashi, Masayuki; Karicheti, Venkateswarlu; Thor, Karl B; Marson, Lesley

2012-10-01

The urethrogenital reflex (UGR) is used as a surrogate model of the autonomic and somatic nerve and muscle activity that accompanies ejaculation. The UGR is evoked by distension of the urethra and activation of penile afferents. The current study compares two methods of elevating urethral intraluminal pressure in spinalized, anesthetized male Sprague-Dawley rats (n = 60). The first method, penile extension UGR, involves extracting the penis from the foreskin, so that urethral pressure rises due to a natural anatomical flexure in the penis. The second method, penile clamping UGR, involves penile extension UGR with the addition of clamping of the glans penis. Groups of animals were prepared that either received no additional treatment, surgical shams, or received bilateral nerve cuts (4 nerve cut groups): either the pudendal sensory nerve branch (SbPN), the pelvic nerves, the hypogastric nerves, or all three nerves. Penile clamping UGR was characterized by multiple bursts, monitored by electromyography (EMG) of the bulbospongiosus muscle (BSM) accompanied by elevations in urethral pressure. The penile clamping UGR activity declined across multiple trials and eventually resulted in only a single BSM burst, indicating desensitization. In contrast, the penile extension UGR, without penile clamping, evoked only a single BSM EMG burst that showed no desensitization. Thus, the UGR is composed of two BSM patterns: an initial single burst, termed urethrobulbospongiosus (UBS) reflex and a subsequent multiple bursting pattern (termed ejaculation-like response, ELR) that was only induced with penile clamping urethral occlusion. Transection of the SbPN eliminated the ELR in the penile clamping model, but the single UBS reflex remained in both the clamping and extension models. Pelvic nerve (PelN) transection increased the threshold for inducing BSM activation with both methods of occlusion but actually unmasked an ELR in the penile extension method. Hypogastric nerve (HgN) cuts did not significantly alter any parameter. Transection of all three nerves eliminated BSM activation completely. In conclusion, penile clamping occlusion recruits penile and urethral primary afferent fibers that are necessary for an ELR. Urethral distension without significant penile afferent activation recruits urethral primary afferent fibers carried in either the pelvic or pudendal nerve that are necessary for the single-burst UBS reflex.

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery

PubMed Central

Lapthorne, Susan; Bines, Julie E; Fouhy, Fiona; Dellios, Nicole L; Wilson, Guineva; Thomas, Sarah L; Scurr, Michelle; Stanton, Catherine; Cotter, Paul D; Pereira-Fantini, Prue M

2015-01-01

AIM: To investigate the impact of minor abdominal surgery on the caecal microbial population and on markers of gut inflammation. METHODS: Four week old piglets were randomly allocated to a no-surgery “control” group (n = 6) or a “transection surgery” group (n = 5). During the transection surgery procedure, a conventional midline incision of the lower abdominal wall was made and the small intestine was transected at a site 225 cm proximal to the ileocaecal valve, a 2 cm segment was removed and the intestine was re-anastomosed. Piglets received a polymeric infant formula diet throughout the study period and were sacrificed at two weeks post-surgery. Clinical outcomes including weight, stool consistency and presence of stool fat globules were monitored. High throughput DNA sequencing of colonic content was used to detect surgery-related disturbances in microbial composition at phylum, family and genus level. Diversity and richness estimates were calculated for the control and minor surgery groups. As disturbances in the gut microbial community are linked to inflammation we compared the gene expression of key inflammatory cytokines (TNF, IL1B, IL18, IL12, IL8, IL6 and IL10) in ileum, terminal ileum and colon mucosal extracts obtained from control and abdominal surgery groups at two weeks post-surgery. RESULTS: Changes in the relative abundance of bacterial species at family and genus level were confined to bacterial members of the Proteobacteria and Bacteroidetes phyla. Family level compositional shifts included a reduction in the relative abundance of Enterobacteriaceae (22.95 ± 5.27 vs 2.07 ± 0.72, P < 0.01), Bacteroidaceae (2.54 ± 0.56 vs 0.86 ± 0.43, P < 0.05) and Rhodospirillaceae (0.40 ± 0.14 vs 0.00 ± 0.00, P < 0.05) following transection surgery. Similarly, at the genus level, changes associated with transection surgery were restricted to members of the Proteobacteria and Bacteroidetes phyla and included decreased relative abundance of Enterobacteriaceae (29.20 ± 6.74 vs 2.88 ± 1.08, P < 0.01), Alistipes (4.82 ± 1.73 vs 0.18 ± 0.13, P < 0.05) and Thalassospira (0.53 ± 0.19 vs 0.00 ± 0.00, P < 0.05). Surgery-associated microbial dysbiosis was accompanied by increased gene expression of markers of inflammation. Within the ileum IL6 expression was decreased (4.46 ± 1.60 vs 0.24 ± 0.06, P < 0.05) following transection surgery. In the terminal ileum, gene expression of TNF was decreased (1.51 ± 0.13 vs 0.80 ± 0.16, P < 0.01) and IL18 (1.21 ± 0.18 vs 2.13 ± 0.24, P < 0.01), IL12 (1.04 ± 0.16 vs 1.82 ± 0.32, P < 0.05) and IL10 (1.04 ± 0.06 vs 1.43 ± 0.09, P < 0.01) gene expression increased following transection surgery. Within the colon, IL12 (0.72 ± 0.13 vs 1.78 ± 0.28, P < 0.01) and IL10 (0.98 ± 0.02 vs 1.95 ± 0.14, P < 0.01) gene expression were increased following transection surgery. CONCLUSION: This study suggests that minor abdominal surgery in infants, results in long-term alteration of the colonic microbial composition and persistent gastrointestinal inflammation. PMID:25892864

Bathymetry and vegetation in isolated marsh and cypress wetlands in the northern Tampa Bay Area, 2000-2004

USGS Publications Warehouse

Haag, Kim H.; Lee, Terrie M.; Herndon, Donald C.

2005-01-01

Wetland bathymetry and vegetation mapping are two commonly used lines of evidence for assessing the hydrologic and ecologic status of expansive coastal and riverine wetlands. For small isolated freshwater wetlands, however, bathymetric data coupled with vegetation assessments are generally scarce, despite the prevalence of isolated wetlands in many regions of the United States and the recognized importance of topography as a control on inundation patterns and vegetation distribution. In the northern Tampa Bay area of west-central Florida, bathymetry was mapped and vegetation was assessed in five marsh and five cypress wetlands. These 10 isolated wetlands were grouped into three categories based on the effects of ground-water withdrawals from regional municipal well fields: natural (no effect), impaired (drier than natural), and augmented (wetlands with artificially augmented water levels). Delineation of the wetland perimeter was a critical component for estimating wetland-surface area and stored water volume. The wetland perimeter was delineated by the presence of Serenoa repens (the 'palmetto fringe') at 9 of the 10 sites. At the 10th site, where the palmetto fringe was absent, hydric-soils indicators were used to delineate the perimeter. Bathymetric data were collected using one or more techniques, depending on the physical characteristics of each wetland. Wetland stage was measured hourly using continuous stage recorders. Wetland vegetation was assessed semiannually for 2 1/2 years in fixed plots located at three distinct elevations. Vegetation assessments were used to determine the community composition and the relative abundance of obligate, facultative wet, and facultative species at each elevation. Bathymetry maps were generated, and stage-area and stage-volume relations were developed for all 10 wetlands. Bathymetric data sets containing a high density of data points collected at frequent and regular spatial intervals provided the most useful stage-area and stage-volume relations. Bathymetric maps of several wetlands also were generated using a low density of data points collected along transect lines or contour lines. In a comparative analysis of the three mapping approaches, stage-area and stage-volume relations based on transect data alone underestimated (by 50-100 percent over certain ranges of stage) the wetland area and volume compared to results using a high density of data points. Adding data points collected along one elevation contour below the wetland perimeter to the transect data set greatly improved the agreement of the resulting stage-area and stage-volume relations to the high-density mapping approach. Stage-area relations and routinely monitored stage data were used to compare and contrast the average flooded area in a natural marsh and an impaired marsh over a 2-year period. Vegetation assessments used together with flooded-area information provided the potential for extrapolating vegetation results from points or transects to wetlands as a whole. A comparison of the frequency of flooding of different areas of the wetland and the species composition in vegetation plots at different elevations indicated the dependence of vegetation on inundation frequency. Because of the broad tolerances of many wetlands plants to a range of inundation conditions, however, vegetation assessments alone provided less definitive evidence of the hydrologic differences between the two sites, and hydrologic changes occurring during the 2 years, than the flooded-area frequencies. Combining flooded-area frequencies with vegetation assessments could provide a more versatile and insightful approach for determining the ecological status of wetlands than using vegetation and stage data alone. Flooded-area frequencies may further provide a useful approach for assessing the ecological status of wetlands where historical vegetation surveys and stage data are lacking. Comparing the contemporary flooded-area frequencies a

Mesoscale variability observed in the Northern Adriatic in autumn 2016

NASA Astrophysics Data System (ADS)

Pasaric, Zoran; Iva, Medjugorac; Nastjenka, Supic; Tamara, Djakovac; Mirko, Orlic

2017-04-01

Quasi-synoptic measurements of hydrographic properties were performed in the Northern Adriatic along the transect extending from Rovinj to the Po River mouth in an approximately east-west direction. The depth along the transect slowly varies between 30 and 40 m. Three one-day cruises were conducted, the first on 12 Nov, the second on 18 Nov, and the third on 25 Nov 2016. During the first and the third cruise the sampling was done with a CTD probe lowered from the surface to the bottom, at eleven stations placed nearly equidistantly along the transect. Average distance between the stations was 6 km. The second cruise was conducted with a towed yo-yo profiler equipped with the CTD probe and continuously undulating between the surface and some 4 m above the bottom. With roughly three undulations per kilometer, horizontal resolution along the transect was about 200 m. The data suggest that three processes occurred during the cruises: 1) surface cooling and related vertical mixing, 2) intrusion of high-salinity waters into the western part of the transect, and 3) propagation of a mesoscale formation in a westward direction. The existence and propagation of the mesoscale feature is supported by a simple analytical model of topographic Rossby waves. By assuming that the bottom varies linearly in the direction perpendicular to the transect, the propagation speed of O(1 km/day) is obtained - in agreement with the observations.

Environmental variation, vegetation distribution, carbon dynamics and water/energy exchange at high latitudes

USGS Publications Warehouse

McGuire, A.D.; Wirth, C.; Apps, M.; Beringer, J.; Clein, J.; Epstein, H.; Kicklighter, D.W.; Bhatti, J.; Chapin, F. S.; De Groot, B.; Efremov, D.; Eugster, W.; Fukuda, M.; Gower, T.; Hinzman, L.; Huntley, B.; Jia, G.J.; Kasischke, E.; Melillo, J.; Romanovsky, V.; Shvidenko, A.; Vaganov, E.; Walker, D.

2002-01-01

The responses of high latitude ecosystems to global change involve complex interactions among environmental variables, vegetation distribution, carbon dynamics, and water and energy exchange. These responses may have important consequences for the earth system. In this study, we evaluated how vegetation distribution, carbon stocks and turnover, and water and energy exchange are related to environmental variation spanned by the network of the IGBP high latitude transects. While the most notable feature of the high latitude transects is that they generally span temperature gradients from southern to northern latitudes, there are substantial differences in temperature among the transects. Also, along each transect temperature co-varies with precipitation and photosynthetically active radiation, which are also variable among the transects. Both climate and disturbance interact to influence latitudinal patterns of vegetation and soil carbon storage among the transects, and vegetation distribution appears to interact with climate to determine exchanges of heat and moisture in high latitudes. Despite limitations imposed by the data we assembled, the analyses in this study have taken an important step toward clarifying the complexity of interactions among environmental variables, vegetation distribution, carbon stocks and turnover, and water and energy exchange in high latitude regions. This study reveals the need to conduct coordinated global change studies in high latitudes to further elucidate how interactions among climate, disturbance, and vegetation distribution influence carbon dynamics and water and energy exchange in high latitudes.

Expression of the repulsive guidance molecule RGM and it receptor Neogenin after spinal cord injury in sea lamprey

PubMed Central

Shifman, Michael I.; Yumul, Rae Eden; Laramore, Cindy; Selzer, Michael E.

2009-01-01

The sea lamprey recovers normal-appearing locomotion after spinal cord transection and its spinal axons regenerate selectively in their correct paths. However, among identified reticulospinal neurons some are consistently bad regenerators and only about 50% of severed reticulospinal axons regenerate through the site of injury. We previously suggested (Shifman and Selzer, 2000) that selective chemorepulsion might explain why some neurons are bad regenerators and others not. To explore the role of additional chemorepulsive axonal guidance molecules during regeneration, we examined the expression of the repulsive guidance molecule (RGM) and its receptor neogenin by in situ hybridization and quantitative PCR. RGM mRNA was expressed in the spinal cord, primarily in neurons of the lateral gray matter and in dorsal cells. Following spinal cord transection, RGM message was downregulated in neurons close (within 10 mm) to the transection at 2 and 4 weeks, although it was upregulated in reactive microglia at 2 weeks post-transection. Neogenin mRNA expression was unchanged in the brainstem after spinal cord transection, and among the identified reticulospinal neurons, was detected only in “bad regenerators, Neurons that are known to regenerate well never expressed neogenin. The downregulation of RGM expression in neurons near the transection may increase the probability that regenerating axons will regenerate through the site of injury and entered caudal spinal cord. PMID:19268666

Indicators of red squirrel (Tamiasciurus hudonicus) abundance in the whitebark pine zone

USGS Publications Warehouse

Mattson, D.J.; Reinhart, Daniel P.

1996-01-01

We investigated occupied squirrel middens and squirrel sightings and vocalizations as indicators of red squirrel (Tamiasciurus hudsonicus) abundance in the high-elevation whitebark pine (Pinus albicaulis) zone. Data were collected 1984-1989 from line transects located on 2 study sites in the Yellowstone ecosystem. We evaluated the performance of each measure on the basis of precision and biological considerations. We concluded that, of the 3 measures, active middens were the best indicator of red squirrel abundance. We also observed that the density of active middens dropped by 48%-66% between 1987 and 1989, following a severe drought and extensive wildfires that burned one of the study sites during 1988.

A field experiment and numerical modeling of a tracer at a gravel beach in Prince William Sound, Alaska

NASA Astrophysics Data System (ADS)

Guo, Qiaona; Li, Hailong; Boufadel, Michel C.; Liu, Jin

2014-12-01

Oil from the 1989 Exxon Valdez oil spill persists in many gravel beaches in Prince William Sound (Alaska, USA), despite great remedial efforts. A tracer study using lithium at a gravel beach on Knight Island, Prince William Sound, during the summer of 2008 is reported. The tracer injection and transport along a transect were simulated using the two-dimensional numerical model MARUN. Model results successfully reproduced the tracer concentrations observed at wells along the transect. A sensitivity analysis revealed that the estimated parameters are well determined. The simulated spatial distribution of tracer indicated that nutrients applied along the transect for bioremediation purposes would be washed to the sea very quickly (within a semi-diurnal tidal cycle) by virtue of the combination of the two-layered beach structure, the tidal fluctuation and the freshwater flow from inland. Thus, pore-water samples in the transect were found to be clean due to factors other than bioremediation. This may explain why the oil did not persist within the transect.

Consequences of Neurite Transection In Vitro

PubMed Central

Cengiz, Nurettin; Erdoğan, Ender; Him, Aydın; Oğuz, Elif Kaval

2012-01-01

Abstract In order to quantify degenerative and regenerative changes and analyze the contribution of multiple factors to the outcome after neurite transection, we cultured adult mouse dorsal root ganglion neurons, and with a precise laser beam, we transected the nerve fibers they extended. Cell preparations were continuously visualized for 24 h with time-lapse microscopy. More distal cuts caused a more elongated field of degeneration, while thicker neurites degenerated faster than thinner ones. Transected neurites degenerated more if the uncut neurites of the same neuron simultaneously degenerated. If any of these uncut processes regenerated, the transected neurites underwent less degeneration. Regeneration of neurites was limited to distal cuts. Unipolar neurons had shorter regeneration than multipolar ones. Branching slowed the regenerative process, while simultaneous degeneration of uncut neurites increased it. Proximal lesions, small neuronal size, and extensive and rapid neurite degeneration were predictive of death of an injured neuron, which typically displayed necrotic rather than apoptotic form. In conclusion, this in vitro model proved useful in unmasking many new aspects and correlates of mechanically-induced neurite injury. PMID:20121423

Detection of sea otters in boat-based surveys of Prince William Sound, Alaska. Marine mammal study 6-19. Exxon Valdez oil spill state/federal natural resource damage assessment final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Udevitz, M.S.; Bodkin, J.L.; Costa, D.P.

1995-05-01

Boat-based surveys were used to monitor the Prince William Sound sea otter population before and after the Exxon Valdez oil spill. Population and loss estimates could be obtained from these surveys by direct expansion from the counts in the surveyed transects under the assumption that all otters in those transects were observed. The authors conducted a pilot study using ground-based observers in conjunction with the August 1990 survey of marine mammals and birds to investigate the validity of this assumption. The proportion of otters detected by boat crews was estimated by comparing boat and ground-based observations on 22 segments ofmore » shoreline transects. Overall, the authors estimated that only 70% of the otters in surveyed shoreline transects were detected by the boat crews. These results suggest that unadjusted expansions of boat survey transect counts will underestimate sea otter population size and that loss estimates based on comparisons of unadjusted population estimates will be biased.« less

The preglacial sediment record of Lake Ladoga, Russia - first results from a seismic survey and sediment coring in 2013

NASA Astrophysics Data System (ADS)

Melles, Martin; Krastel, Sebastian; Fedorov, Grigory; Subetto, Dmitry A.; Savelieva, Larisa A.; Andreev, Andrej; Wagner, Bernd

2014-05-01

The new German-Russian project PLOT (Paleolimnological Transect) aims at investigating the Late Quaternary climatic and environmental history along a more than 6000 km long longitudinal transect crossing northern Eurasia. Special emphasis is put on the preglacial history. For this purpose shallow and deep seismic surveys shall be carried out on five lakes, which potentially host preglacial sediment records, followed by sediment coring based on the results of the seismic campaigns. The well-studied Lake El'gygytgyn represents the eastern-most location of the transect and acts as reference site. Within the scope of a pilot phase for the PLOT project, funded by the German Federal Ministry of Education and Research, we were able to investigate Lake Ladoga, which is located close to St. Petersburg at the western end of the transect. Lake Ladoga is the largest lake in Europe, covering an area of almost 18.000 km2. The modern sedimentation as well as the late glacial and Holocene history of the lake were already studied in detail over the past decades. The older, preglacial lake history, however, is only rudimentary known from a core transect drilled in the southern lake in the 1930th. The cores of up to about 60 m length were only briefly described and are not existing any more. The results from these cores, known from unpublished reports only, suggest the existence of marine sediments of presumably Eemian age, representing a time when Lake Lagoga was part of a precursor of the Baltic Sea, which had a connection via Ladoga and Onega Lakes to the White Sea and further to the Arctic Ocean. In late August/early September 2013 we carried out a seismic survey on Lake Ladoga using a Mini-GI-Gun and a 32-channel seismic streamer. In total, 1500 km of seismic profiles were measured, covering most parts of the lake. The seismic lines typically show acoustically well stratified Holocene muds overlaying rather transparent postglacial varves. These sediment successions can reach more than 10 m in thickness. They usually are bordered by a hard reflector underneath that may represent coarse-grained sediments or a till, which in most areas is not penetrated by the acoustic waves. In particular in the western part of the lake, however, these sediment successions can be underlain by sedimentary strata of up to 60 m thickness that fill steeply sloped depressions or channels. Sediment coring at two sites in western Ladoga Lake confirmed the seismic interpretation of the postglacial sediment succession. At one of these sites, the basal reflector at about 13 m depth was penetrated another ca. 10 m into preglacial sediments. According to initial pollen data, these sediments were formed during an interglacial with a slightly warmer climate than that of the Holocene. Further work is currently carried out, for instance, to identify which of the Quaternary interglacials is respresented by the sediments cored in 2013.

Innervation regulates synaptic ribbons in lateral line mechanosensory hair cells

PubMed Central

Pujol, Remy; Cunningham, Dale E.; Hailey, Dale W.; Prendergast, Andrew; Rubel, Edwin W.; Raible, David W.

2016-01-01

ABSTRACT Failure to form proper synapses in mechanosensory hair cells, the sensory cells responsible for hearing and balance, leads to deafness and balance disorders. Ribbons are electron-dense structures that tether synaptic vesicles to the presynaptic zone of mechanosensory hair cells where they are juxtaposed with the post-synaptic endings of afferent fibers. They are initially formed throughout the cytoplasm, and, as cells mature, ribbons translocate to the basolateral membrane of hair cells to form functional synapses. We have examined the effect of post-synaptic elements on ribbon formation and maintenance in the zebrafish lateral line system by observing mutants that lack hair cell innervation, wild-type larvae whose nerves have been transected and ribbons in regenerating hair cells. Our results demonstrate that innervation is not required for initial ribbon formation but suggest that it is crucial for regulating the number, size and localization of ribbons in maturing hair cells, and for ribbon maintenance at the mature synapse. PMID:27103160

Innervation regulates synaptic ribbons in lateral line mechanosensory hair cells.

PubMed

Suli, Arminda; Pujol, Remy; Cunningham, Dale E; Hailey, Dale W; Prendergast, Andrew; Rubel, Edwin W; Raible, David W

2016-06-01

Failure to form proper synapses in mechanosensory hair cells, the sensory cells responsible for hearing and balance, leads to deafness and balance disorders. Ribbons are electron-dense structures that tether synaptic vesicles to the presynaptic zone of mechanosensory hair cells where they are juxtaposed with the post-synaptic endings of afferent fibers. They are initially formed throughout the cytoplasm, and, as cells mature, ribbons translocate to the basolateral membrane of hair cells to form functional synapses. We have examined the effect of post-synaptic elements on ribbon formation and maintenance in the zebrafish lateral line system by observing mutants that lack hair cell innervation, wild-type larvae whose nerves have been transected and ribbons in regenerating hair cells. Our results demonstrate that innervation is not required for initial ribbon formation but suggest that it is crucial for regulating the number, size and localization of ribbons in maturing hair cells, and for ribbon maintenance at the mature synapse. © 2016. Published by The Company of Biologists Ltd.

Beach litter sourcing: A trawl along the Northern Ireland coastline.

PubMed

Williams, A T; Randerson, P; Allen, C; Cooper, J A G

2017-09-15

Fourteen non-recreational coastal locations in Northern Ireland were investigated as to whether beach litter deposition was related to seasonal or site specific factors. Litter items were counted in 100m width transects and 1km strand-line surveys over a five-season period (autumn to autumn). Survey sites comprised fishing ports; estuarine areas, north (high energy) and east coast (low energy) beaches. Fishing ports accumulated the most litter. In the 100m beach surveys, plastics, string and cord, bottle caps, food items, rope, and drink containers dominated. In strand-line surveys, large plastic pieces were dominant, followed by rope, string and cord, strapping bands (absent on beach surveys), cloth, wood (mainly pallets, fish boxes) and metal items. Multivariate analyses revealed major litter category differences between the ports and all other sites, with a lesser distinction between exposed and estuarine sites. There was no simple coastline trend and no apparent effect of seasonality between samples. Copyright © 2017 Elsevier Ltd. All rights reserved.

Winter bird population studies and project prairie birds for surveying grassland birds

Treesearch

Daniel J. Twedt; Paul B. Hamel; Mark S. Woodrey

2008-01-01

We compared 2 survey methods for assessing winter bird communities in temperate grasslands: Winter Bird Population Study surveys are area-searches that have long been used in a variety of habitats whereas Project Prairie Bird surveys employ active-flushing techniques on strip-transects and are intended for use in grasslands.

Methods for measuring populations of small, diurnal forest birds.

Treesearch

D.A. Manuwal; A.B. Carey

1991-01-01

Before a bird population is measured, the objectives of the study should be clearly defined. Important factors to be considered in designing a study are study site selection, plot size or transect length, distance between sampling points, duration of counts, and frequency and timing of sampling. Qualified field personnel are especially important. Assumptions applying...

The transect of happiness and community’s capability in urbanizing Yogyakarta

NASA Astrophysics Data System (ADS)

Pramono, RWD

2018-03-01

The idea of this paper is that happy-friendly city is it that able to support capability. In addition to factors affixed to an individual, an important element determining someone’s happiness is the quality of a place. This research tries to explain the role of quality of place formed by urbanization process by taking Yogyakarta case as the sample. The importance of variation of particular area caused by urbanization is revealed using transect method. This method showed the shifting gradation from the very center of the city that first experienced urbanization up to the peripheral that experienced it last. The initial result of this clustered-multistage random sampling shows a gradation in capability. It also describes the similar tendency regarding self-evaluation against happiness although not very clear. Further analysis is conducted to define influencing factors. They consist of 40 capability assets that belong to Individual Tangible Asset, Public Tangible Asset, Individual Intangible Asset, Social Institutional Asset, and Economic Institutional Asset. However, the focus of analysis will be on variables included in Public Tangible Asset, Social Institutional Asset, and Economic Institutional Asset called as place-attached assets.

Estimated areal extent of colonies of black-tailed prairie dogs in the northern Great Plains

USGS Publications Warehouse

Sidle, John G.; Johnson, Douglas H.; Euliss, Betty R.

2001-01-01

During 1997–1998, we undertook an aerial survey, with an aerial line-intercept technique, to estimate the extent of colonies of black-tailed prairie dogs (Cynomys ludovicianus) in the northern Great Plains states of Nebraska, North Dakota, South Dakota, and Wyoming. We stratified the survey based on knowledge of colony locations, computed 2 types of estimates for each stratum, and combined ratio estimates for high-density strata with average density estimates for low-density strata. Estimates of colony areas for black-tailed prairie dogs were derived from the average percentages of lines intercepting prairie dog colonies and ratio estimators. We selected the best estimator based on the correlation between length of transect line and length of intercepted colonies. Active colonies of black-tailed prairie dogs occupied 2,377.8 km2 ± 186.4 SE, whereas inactive colonies occupied 560.4 ± 89.2 km2. These data represent the 1st quantitative assessment of black-tailed prairie dog colonies in the northern Great Plains. The survey dispels popular notions that millions of hectares of colonies of black-tailed prairie dogs exist in the northern Great Plains and can form the basis for future survey efforts.

Aeromagnetic and gravity data over the Central Transantarctic Mountains (CTAM), Antarctica: a website for the distribution of data and maps

USGS Publications Warehouse

Anderson, E.D.; Finn, C.A.; Damaske, D.; Abraham, J.D.; Goldmann, F.; Goodge, J.W.; Braddock, P.

2006-01-01

Near complete coverage of the East Antarctic Shield by ice hampers geological study of crustal architecture important for understanding global tectonic and climate history. Limited exposures in the central Transantarctic Mountains (CTAM), however, show that Archean and Proterozoic rocks of the shield as well as Neoproterozoic-lower Paleozoic sedimentary successions were involved in oblique convergence associated with Gondwana amalgamation. Subsequently, the area was overprinted by Jurassic magmatism and Cenozoic uplift. To extend the known geology of the region to ice-covered areas, we conducted an aeromagnetic survey flown in draped mode by helicopters over the Central Transantarctic Mountains and by fixed-wing aircraft over the adjacent polar plateau. We flew more than 32,000 line km covering an area of nearly 60,000 km2 at an average altitude of 600 m, with average line spacing 2.5 km over most areas and 1.25 km over basement rocks exposed in the Miller and Geologists ranges. Additional lines flown to the north, south, and west extended preliminary coverage and tied with existing surveys. Gravity data was collected on the ground along a central transect of the helicopter survey area.

NGEE Arctic Plant Traits: Shrub Transects, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016

DOE Data Explorer

Verity Salmon; Colleen Iversen; Peter Thornton; Ma

2017-03-01

Transect data is from point center quarter surveys for shrub density performed in July 2016 at the Kougarok hill slope located at Kougarok Road, Mile Marker 64. For each sample point along the transects, moving averages for shrub density and shrub basal area are provided along with GPS coordinates, average shrub height and active layer depth. The individual height, basal area, and species of surveyed shrubs are also included. Data upload will be completed January 2017.

Effects of excluding goat herbivory on Acacia tortilis woodland around pastoralist settlements in northwest Kenya

NASA Astrophysics Data System (ADS)

Oba, Gufu

1998-08-01

Browsing by goats is considered to cause poor tree regeneration and reduced tree growth around settlements throughout the arid zones of sub-Saharan Africa. This study investigated whether excluding goats from Acacia tortilis woodlands increased tree regeneration, current season's shoot growth rates and browse production over a period of 52 months between 1986 and 1990. The study also investigated the effects of climatic variability on tree growth and browse production. Excluding goat herbivory provided no advantage over continuous browsing for juvenile A. tortilis. Trees on the unbrowsed and on browsed transects increased by 22.2 (standard error [SE] ± 0.53) cm·yr -1 and 25.0 (SE ± 0.58) cm·yr -1, respectively. Fewer but longer shoots were produced by trees on the unbrowsed transects, while trees on the browsed transects invested more in shorter shoots. Net total browse production was lower on unbrowsed (1.73 [standard deviation (SD) ± 4.3] t·ha -1·yr -1) than on the browsed (3.03 [SD ± 3.6] t·ha -1 ·yr -1) transects. Biomass production on unbrowsed and browsed transects was closely correlated with rainfall and presumably soil moisture during wet seasons. Relative growth rates (RGR) of current season's shoots in the two treatments did not differ, implying goat herbivory at moderate stocking density (i.e. 13.0 tropical livestock units [TLU]·km -2) stimulated shoot growth. RGR remained positive except on the browsed transects during 1990, a dry year. Goat browsing pressure was moderate. Total biomass loss on unbrowsed transects was 15.5 %·yr -1 compared with 27.7 %·yr -1 on the browsed transects. These findings do not support the notion that goats always destroy young trees around settlements. Goat herbivory at moderate intensity stimulated shoot productivity. However, the results should not be used to generalize all conditions throughout sub-Saharan Africa, let alone the arid zones of northern Kenya. Rather, there is a need to emphasize individual case studies that ultimately can be used for managing degraded woodlands near pastoralist settlements.

Nerve transection repair using laser-activated chitosan in a rat model.

PubMed

Bhatt, Neel K; Khan, Taleef R; Mejias, Christopher; Paniello, Randal C

2017-08-01

Cranial nerve transection during head and neck surgery is conventionally repaired with microsuture. Previous studies have demonstrated recovery with laser nerve welding (LNW), a novel alternative to microsuture. LNW has been reported to have poorer tensile strength, however. Laser-activated chitosan, an adhesive biopolymer, may promote nerve recovery while enhancing the tensile strength of the repair. Using a rat posterior tibial nerve injury model, we compared four different methods of nerve repair in this pilot study. Animal study. Animals underwent unilateral posterior tibial nerve transection. The injury was repaired by potassium titanyl phosphate (KTP) laser alone (n = 20), KTP + chitosan (n = 12), microsuture + chitosan (n = 12), and chitosan alone (n = 14). Weekly walking tracks were conducted to measure functional recovery (FR). Tensile strength (TS) was measured at 6 weeks. At 6 weeks, KTP laser alone had the best recovery (FR = 93.4% ± 8.3%). Microsuture + chitosan, KTP + chitosan, and chitosan alone all showed good FR (87.4% ± 13.5%, 84.6% ± 13.0%, and 84.1% ± 10.0%, respectively). One-way analysis of variance was performed (F(3,56) = 2.6, P = .061). A TS threshold of 3.8 N was selected as a control mean recovery. Three groups-KTP alone, KTP + chitosan, and microsuture + chitosan-were found to meet threshold 60% (95% confidence interval [CI]: 23.1%-88.3%), 75% (95% CI: 46.8%-91.1%), and 100% (95% CI: 75.8%-100.0%), respectively. In the posterior tibial nerve model, all repair methods promoted nerve recovery. Laser-activated chitosan as a biopolymer anchor provided good TS and appears to be a novel alternative to microsuture. This repair method may have surgical utility following cranial nerve injury during head and neck surgery. NA Laryngoscope, 127:E253-E257, 2017. © 2017 The American Laryngological, Rhinological and Otological Society, Inc.

Linking landscapes and habitat suitability scores for diadromous fish restoration in the susquehanna river basin

USGS Publications Warehouse

Kocovsky, P.M.; Ross, R.M.; Dropkin, D.S.; Campbell, J.M.

2008-01-01

Dams within the Susquehanna River drainage, Pennsylvania, are potential barriers to migration of diadromous fishes, and many are under consideration for removal to facilitate fish passage. To provide useful input for prioritizing dam removal, we examined relations between landscape-scale factors and habitat suitability indices (HSIs) for native diadromous species of the Susquehanna River. We used two different methods (U.S. Fish and Wildlife Service method: Stier and Crance [1985], Ross et al. [1993a, 1993b, 1997], and Pardue [1983]; Pennsylvania State University method: Carline et al. [1994]) to calculate HSIs for several life stages of American shad Alosa sapidissima, alewives Alosa pseudoharengus, and blueback herring Alosa aestivalis and a single HSI for American eels Anguilla rostrata based on habitat variables measured at transects spaced every 5 km on six major Susquehanna River tributaries. Using geographical information systems, we calculated land use and geologic variables upstream from each transect and associated those data with HSIs calculated at each transect. We then performed canonical correlation analysis to determine how HSIs were linked to geologic and land use factors. Canonical correlation analysis identified the proportion of watershed underlain by carbonate rock as a positive correlate of HSIs for all species and life stages except American eels and juvenile blueback herring. We hypothesize that potential mechanisms linking carbonate rock to habitat suitability include increased productivity and buffering capacity. No other consistent patterns of positive or negative correlation between landscape-scale factors and HSIs were evident. This analysis will be useful for prioritizing removal of dams in the Susquehanna River drainage, because it provides a broad perspective on relationships between habitat suitability for diadromous fishes and easily measured landscape factors. This approach can be applied elsewhere to elucidate relationships between fine- and coarse-scale variables and suitability of habitat for fishes. ?? Copyright by the American Fisheries Society 2008.

Investigating the influence of PFC transection and nicotine on dynamics of AMPA and NMDA receptors of VTA dopaminergic neurons.

PubMed

Chen, Ting; Zhang, Die; Dragomir, Andrei; Kobayashi, Kunikazu; Akay, Yasemin; Akay, Metin

2011-10-21

All drugs of abuse, including nicotine, activate the mesocorticolimbic system that plays critical roles in nicotine reward and reinforcement development and triggers glutamatergic synaptic plasticity on the dopamine (DA) neurons in the ventral tegmental area (VTA). The addictive behavior and firing pattern of the VTA DA neurons are thought to be controlled by the glutamatergic synaptic input from prefrontal cortex (PFC). Interrupted functional input from PFC to VTA was shown to decrease the effects of the drug on the addiction process. Nicotine treatment could enhance the AMPA/NMDA ratio in VTA DA neurons, which is thought as a common addiction mechanism. In this study, we investigate whether or not the lack of glutamate transmission from PFC to VTA could make any change in the effects of nicotine. We used the traditional AMPA/NMDA peak ratio, AMPA/NMDA area ratio, and KL (Kullback-Leibler) divergence analysis method for the present study. Our results using AMPA/NMDA peak ratio showed insignificant difference between PFC intact and transected and treated with saline. However, using AMPA/NMDA area ratio and KL divergence method, we observed a significant difference when PFC is interrupted with saline treatment. One possible reason for the significant effect that the PFC transection has on the synaptic responses (as indicated by the AMPA/NMDA area ratio and KL divergence) may be the loss of glutamatergic inputs. The glutamatergic input is one of the most important factors that contribute to the peak ratio level. Our results suggested that even within one hour after a single nicotine injection, the peak ratio of AMPA/NMDA on VTA DA neurons could be enhanced.

Camera traps and activity signs to estimate wild boar density and derive abundance indices.

PubMed

Massei, Giovanna; Coats, Julia; Lambert, Mark Simon; Pietravalle, Stephane; Gill, Robin; Cowan, Dave

2018-04-01

Populations of wild boar and feral pigs are increasing worldwide, in parallel with their significant environmental and economic impact. Reliable methods of monitoring trends and estimating abundance are needed to measure the effects of interventions on population size. The main aims of this study, carried out in five English woodlands were: (i) to compare wild boar abundance indices obtained from camera trap surveys and from activity signs; and (ii) to assess the precision of density estimates in relation to different densities of camera traps. For each woodland, we calculated a passive activity index (PAI) based on camera trap surveys, rooting activity and wild boar trails on transects, and estimated absolute densities based on camera trap surveys. PAIs obtained using different methods showed similar patterns. We found significant between-year differences in abundance of wild boar using PAIs based on camera trap surveys and on trails on transects, but not on signs of rooting on transects. The density of wild boar from camera trap surveys varied between 0.7 and 7 animals/km 2 . Increasing the density of camera traps above nine per km 2 did not increase the precision of the estimate of wild boar density. PAIs based on number of wild boar trails and on camera trap data appear to be more sensitive to changes in population size than PAIs based on signs of rooting. For wild boar densities similar to those recorded in this study, nine camera traps per km 2 are sufficient to estimate the mean density of wild boar. © 2017 Crown copyright. Pest Management Science © 2017 Society of Chemical Industry. © 2017 Crown copyright. Pest Management Science © 2017 Society of Chemical Industry.

Intra-articular injection of a nutritive mixture solution protects articular cartilage from osteoarthritic progression induced by anterior cruciate ligament transection in mature rabbits: a randomized controlled trial

PubMed Central

Park, Yoo-Sin; Lim, Si-Woong; Lee, Il-Hoon; Lee, Tae-Jin; Kim, Jong-Sung; Han, Jin Soo

2007-01-01

Osteoarthritis (OA) is a degenerative disease that disrupts the collagenous matrix of articular cartilage and is difficult to cure because articular cartilage is a nonvascular tissue. Treatment of OA has targeted macromolecular substitutes for cartilage components, such as hyaluronic acid or genetically engineered materials. However, the goal of the present study was to examine whether intra-articular injection of the elementary nutrients restores the matrix of arthritic knee joints in mature animals. A nutritive mixture solution (NMS) was composed of elementary nutrients such as glucose or dextrose, amino acids and ascorbic acid. It was administered five times (at weeks 6, 8, 10, 13 and 16) into the unilateral anterior cruciate ligament transected knee joints of mature New Zealand White rabbits, and the effect of NMS injection was compared with that of normal saline. OA progression was histopathologically evaluated by haematoxylin and eosin staining, by the Mankin grading method and by scanning electron microscopy at week 19. NMS injection decreased progressive erosion of articular cartilage overall compared with injection of normal saline (P < 0.01), and nms joints exhibited no differences relative to normal cartilage that had not undergone transection of the anterior cruciate ligament, as assessed using the mankin grading method. Haematoxylin and eosin staining and scanning electron microscopy findings also indicated that nms injection, in constrast to normal saline injection, restored the cartilage matrix, which is known to be composed of a collagen and proteoglycan network. thus, nms injection is a potent treatment that significantly retards oa progression, which in turn prevents progressive destruction of joints and functional loss in mature animals. PMID:17257416

Neurotrophin expression and laryngeal muscle pathophysiology following recurrent laryngeal nerve transection

PubMed Central

WANG, BAOXIN; YUAN, JUNJIE; XU, JIAFENG; XIE, JIN; WANG, GUOLIANG; DONG, PIN

2016-01-01

Laryngeal palsy often occurs as a result of recurrent laryngeal or vagal nerve injury during oncological surgery of the head and neck, affecting quality of life and increasing economic burden. Reinnervation following recurrent laryngeal nerve (RLN) injury is difficult despite development of techniques, such as neural anastomosis, nerve grafting and creation of a laryngeal muscle pedicle. In the present study, due to the limited availability of human nerve tissue for research, a rat model was used to investigate neurotrophin expression and laryngeal muscle pathophysiology in RLN injury. Twenty-five male Sprague-Dawley rats underwent right RLN transection with the excision of a 5-mm segment. Vocal fold movements, vocalization, histology and immunostaining were evaluated at different time-points (3, 6, 10 and 16 weeks). Although vocalization was restored, movement of the vocal fold failed to return to normal levels following RLN injury. The expression of brain-derived neurotrophic factor and glial cell line-derived neurotrophic factor differed in the thyroarytenoid (TA) and posterior cricoarytenoid muscles. The number of axons did not increase to baseline levels over time. Furthermore, normal muscle function was unlikely with spontaneous reinnervation. During regeneration following RLN injury, differences in the expression levels of neurotrophic factors may have resulted in preferential reinnervation of the TA muscles. Data from the present study indicated that neurotrophic factors may be applied for restoring the function of the laryngeal nerve following recurrent injury. PMID:26677138

Neurotrophin expression and laryngeal muscle pathophysiology following recurrent laryngeal nerve transection.

PubMed

Wang, Baoxin; Yuan, Junjie; Xu, Jiafeng; Xie, Jin; Wang, Guoliang; Dong, Pin

2016-02-01

Laryngeal palsy often occurs as a result of recurrent laryngeal or vagal nerve injury during oncological surgery of the head and neck, affecting quality of life and increasing economic burden. Reinnervation following recurrent laryngeal nerve (RLN) injury is difficult despite development of techniques, such as neural anastomosis, nerve grafting and creation of a laryngeal muscle pedicle. In the present study, due to the limited availability of human nerve tissue for research, a rat model was used to investigate neurotrophin expression and laryngeal muscle pathophysiology in RLN injury. Twenty-five male Sprague-Dawley rats underwent right RLN transection with the excision of a 5-mm segment. Vocal fold movements, vocalization, histology and immunostaining were evaluated at different time-points (3, 6, 10 and 16 weeks). Although vocalization was restored, movement of the vocal fold failed to return to normal levels following RLN injury. The expression of brain‑derived neurotrophic factor and glial cell line-derived neurotrophic factor differed in the thyroarytenoid (TA) and posterior cricoarytenoid muscles. The number of axons did not increase to baseline levels over time. Furthermore, normal muscle function was unlikely with spontaneous reinnervation. During regeneration following RLN injury, differences in the expression levels of neurotrophic factors may have resulted in preferential reinnervation of the TA muscles. Data from the present study indicated that neurotrophic factors may be applied for restoring the function of the laryngeal nerve following recurrent injury.

Abundance and Genetic Diversity of nifH Gene Sequences in Anthropogenically Affected Brazilian Mangrove Sediments

PubMed Central

Dias, Armando Cavalcante Franco; Pereira e Silva, Michele de Cassia; Cotta, Simone Raposo; Dini-Andreote, Francisco; Soares, Fábio Lino; Salles, Joana Falcão; Azevedo, João Lúcio; van Elsas, Jan Dirk

2012-01-01

Although mangroves represent ecosystems of global importance, the genetic diversity and abundance of functional genes that are key to their functioning scarcely have been explored. Here, we present a survey based on the nifH gene across transects of sediments of two mangrove systems located along the coast line of São Paulo state (Brazil) which differed by degree of disturbance, i.e., an oil-spill-affected and an unaffected mangrove. The diazotrophic communities were assessed by denaturing gradient gel electrophoresis (DGGE), quantitative PCR (qPCR), and clone libraries. The nifH gene abundance was similar across the two mangrove sediment systems, as evidenced by qPCR. However, the nifH-based PCR-DGGE profiles revealed clear differences between the mangroves. Moreover, shifts in the nifH gene diversities were noted along the land-sea transect within the previously oiled mangrove. The nifH gene diversity depicted the presence of nitrogen-fixing bacteria affiliated with a wide range of taxa, encompassing members of the Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, and also a group of anaerobic sulfate-reducing bacteria. We also detected a unique mangrove-specific cluster of sequences denoted Mgv-nifH. Our results indicate that nitrogen-fixing bacterial guilds can be partially endemic to mangroves, and these communities are modulated by oil contamination, which has important implications for conservation strategies. PMID:22941088

Abundance and genetic diversity of nifH gene sequences in anthropogenically affected Brazilian mangrove sediments.

PubMed

Dias, Armando Cavalcante Franco; Pereira e Silva, Michele de Cassia; Cotta, Simone Raposo; Dini-Andreote, Francisco; Soares, Fábio Lino; Salles, Joana Falcão; Azevedo, João Lúcio; van Elsas, Jan Dirk; Andreote, Fernando Dini

2012-11-01

Although mangroves represent ecosystems of global importance, the genetic diversity and abundance of functional genes that are key to their functioning scarcely have been explored. Here, we present a survey based on the nifH gene across transects of sediments of two mangrove systems located along the coast line of São Paulo state (Brazil) which differed by degree of disturbance, i.e., an oil-spill-affected and an unaffected mangrove. The diazotrophic communities were assessed by denaturing gradient gel electrophoresis (DGGE), quantitative PCR (qPCR), and clone libraries. The nifH gene abundance was similar across the two mangrove sediment systems, as evidenced by qPCR. However, the nifH-based PCR-DGGE profiles revealed clear differences between the mangroves. Moreover, shifts in the nifH gene diversities were noted along the land-sea transect within the previously oiled mangrove. The nifH gene diversity depicted the presence of nitrogen-fixing bacteria affiliated with a wide range of taxa, encompassing members of the Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, and also a group of anaerobic sulfate-reducing bacteria. We also detected a unique mangrove-specific cluster of sequences denoted Mgv-nifH. Our results indicate that nitrogen-fixing bacterial guilds can be partially endemic to mangroves, and these communities are modulated by oil contamination, which has important implications for conservation strategies.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Boeckx, Pascal; Kearsley, Elizabeth; Cizungu, Landry; Verbeeck, Hans

2016-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Africa, focussing on shifts in carbon allocation, forest structure and functional composition. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed adaption mechanisms are.

Transection of the deep metatarsal transverse ligament in Morton's neuroma surgery does not increase risk of splayfoot development.

PubMed

Kasparek, Maximilian; Schneider, Wolfgang

2016-05-01

Although operative excision is regarded as the treatment of choice in Morton's neuroma, it remains unclear whether transection of deep transverse metatarsal ligament (DTML) is a risk for metatarsal splaying and whether simultaneous surgery in adjacent intermetatarsal spaces is a risk for osteonecrosis of the adjacent metatarsals. Fifty-seven feet in 47 patients had excision of a Morton's neuroma, with a mean follow-up of 15.3 years. Feet were categorised depending upon whether the DTML was or was not divided. Pre-operative and post-operative intermetatarsal angles were measured on standardised weightbearing radiographs and inspected for evidence of osteonecrosis. Comparison of pre- and post-operative intermetatarsal angles in patients with surgery in the second web space showed no significant increase (transected p = 0.659, preserved p = 0.142). In regards to comparison of pre- and post-operative radiographic intermetatarsal angles in patients with surgery in the third web space, statistical analysis also did not show a significance increase (transected p = 0.240, preserved p = 0.078). Radiological assessment showed no signs of osteonecrosis of metatarsal heads, not even in cases of double-space surgery. In conclusion, DTML transection does not increase the intermetatarsal angle or the risk of splayfoot development. Moreover, transection is recommended due to an enhanced overview during surgery and better clinical outcome. Our data could also prove that double-space surgery is not a risk for avascular osteonecrosis.

Full spinal cord regeneration after total transection is not possible due to entropy change.

PubMed

Zielinski, P; Sokal, P

2016-09-01

Transected spinal cord regeneration is a main challenge of regenerative medicine. The mainstream of research is focused on the promotion of spinal axons growth, which is strongly inhibited in mammals. Assuming that the inhibition of the axonal growth may be ever overcome, the complexity of neural reconnections may be the second serious stand to overcome. Peripheral nerve axons regeneration seem to form a random pattern of their targets reconnections. The hypothesis is that due to the laws of entropy or irreversible information loss the full spinal cord restoration after the transection is not possible. The hypothesis is discussed based on several assumptions. Simplifying the dissertation spinal cord is represented by 2millions of pyramidal axons. After the transection each of these axons has to make a growth and reconnect with exactly matching targets below the transection, in the same number. Axons are guided by neurotrophic factors and afterwards reconnected with neuroplasticity mechanisms. Assuming random reconnections, there are 2,000,000! permutations [Formula: see text] , therefore the chance of ideally random but correct reconnection of pyramidal axons with adequate targets is 1/2,000,000!. Apart from pyramidal axons, there are other axons, like extrapyramidal, sensory and associative. Empirical data and analysis of neurotrophic factors and organogenesis mechanisms may seem to slightly contradict the hypothesis, but strictly adhering to the second law of thermodynamics and entropy laws the full restoration of the transected cord may never be possible. Copyright © 2016 Elsevier Ltd. All rights reserved.

Transection of vessels in epiphyseal cartilage canals leads to osteochondrosis and osteochondrosis dissecans in the femoro-patellar joint of foals; a potential model of juvenile osteochondritis dissecans.

PubMed

Olstad, K; Hendrickson, E H S; Carlson, C S; Ekman, S; Dolvik, N I

2013-05-01

To transect blood vessels within epiphyseal cartilage canals and observe whether this resulted in ischaemic chondronecrosis, an associated focal delay in enchondral ossification [osteochondrosis (OC)] and pathological cartilage fracture [osteochondrosis dissecans (OCD)] in the distal femur of foals, with potential translational value to the pathogenesis of juvenile osteochondritis dissecans (JOCD) in children. Ten Norwegian Fjord Pony foals were operated at the age of 13-15 days. Two vessels supplying the epiphyseal growth cartilage of the lateral trochlear ridge of the left distal femur were transected in each foal. Follow-up examination was carried out from 1 to 49 days post-operatively and included plain radiography, macroscopic and histological examination. Transection of blood vessels within epiphyseal cartilage canals resulted in necrosis of vessels and chondrocytes, i.e., ischaemic chondronecrosis, in foals. Areas of ischaemic chondronecrosis were associated with a focal delay in enchondral ossification (OC) in foals examined 21 days or more after transection, and pathological cartilage fracture (OCD) in one foal examined 42 days after transection. The ischaemic hypothesis for the pathogenesis of OC has been reproduced experimentally in foals. There are several similarities between OCD in animals and JOCD in children. It should be investigated whether JOCD also occurs due to a focal failure in the cartilage canal blood supply, followed by ischaemic chondronecrosis. Copyright © 2013 Osteoarthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Modified Liver Hanging Maneuver for En-bloc Right-sided Hepatectomy Combined with Total Caudate Lobectomy for Colon-Cancer Liver Metastasis and Hepatocellular Carcinoma.

PubMed

Hiroshima, Yukihiko; Matsuo, Kenichi; Kawaguchi, Daisuke; Kikuchi, Yutaro; Endo, Itaru; Koda, Keiji; Togo, Shinji; Hoffman, Robert M; Tanaka, Kuniya

2016-04-01

A right-sided hepatectomy with total caudate lobectomy is indicated for colorectal-cancer liver metastases (CLM) and hepatocellular carcinomas (HCC) located in the caudate lobe with extension to the right lobe of the liver. Caudate-lobe resection (i.e. segmentectomy 1 according to the Brisbane terminology) is one of the most difficult types of hepatectomy to carry out radically and safely. The deep portion of hepatic transection around the caudate lobe, hepatic veins and inferior vena cava is a critical source of massive bleeding. Prolonged transection can increase blood loss. We analyzed the outcome of 10 patients who underwent right-sided hepatectomy with caudate lobectomy using a modified liver hanging maneuver (mLHM) in comparison with 16 patients who underwent the operation without mLHM. Blood loss during liver transection and blood loss per unit area of cut surface were significantly less in the mLHM group (p=0.014 and 0.015, respectively). In patients diagnosed pathologically with liver impairment, transection time was significantly shorter in the mLHM group (p=0.038), as were red blood cell transfusion volume (p=0.042) and blood loss (p=0.049) during transection. Use of mLHM can potentially improve surgical outcomes by reducing blood loss and transection time, which are especially important for patients with liver impairment. Copyright© 2016 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Verbeeck, Hans; Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Kearsley, Elizabeth; Cizungu, Landry; Boeckx, Pascal

2017-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Central Africa, focussing on shifts in carbon allocation, forest structure, nutrient cycling and functional composition. The Ecuadorian transect has 16 plots (40 by 40 m) and ranges from 400 to 3000 m.a.s.l., and the Rwandan transect has 20 plots (40 by 40 m) from 1500 to 3000 m.a.s.l. All plots were inventoried and canopy, litter and soil were extensively sampled. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed altitudinal adaption mechanisms are. This could provide us with vital information of the ecological responses of both biomes to future global change scenarios. Additionally, comparison of nutrient shifts and trait-based functional composition allows us to compare the biogeochemical cycles of African and South-American tropical forests.

Batrachochytrium dendrobatidis infection patterns among Panamanian amphibian species, habitats and elevations during epizootic and enzootic stages.

PubMed

Brem, Forrest M R; Lips, Karen R

2008-09-24

The pathogenic fungus Batrachochytrium dendrobatidis (Bd) has caused declines of many amphibian populations, yet the full course of the epizootic has rarely been observed in wild populations. We determined effects of elevation, habitat, and aquatic index (AI) on prevalence of infection among Panamanian amphibians sampled along 2 elevational transects. Amphibian populations on the Santa Fé transect (SFT) had declined in 2002, while those on the El Copé transect (ECT) were healthy until September 2004. In 2004 we sampled Bd along both transects, surveying the SFT 2 yr after decline, and surveying the ECT 4 mo prior to the arrival of Bd, during the epizootic, and 2 mo later. Overall prevalence of Bd along the ECT increased from 0.0 (95% CI 0.00-0.0003) to 0.51 (95% CI 0.48-0.55) over a 3 mo period, accompanied by significant decreases in amphibian abundance and species richness in all habitats. Prevalence of infection on the ECT was highest along riparian transects and at higher elevations, but not among levels of AI. Prevalence of infection on the SFT was highest in pool transects, and at higher elevations, but not among levels of AI. Riparian amphibian abundance and species richness also declined at SFT following detection of Bd in 2002. Variation among species, microenvironmental conditions, and the length of coexistence with Bd may contribute to observed differences in prevalence of Bd and in population response.

L-Dopa effect on frequency-dependent depression of the H-reflex in adult rats with complete spinal cord transection.

PubMed

Liu, Hao; Skinner, Robert D; Arfaj, Ahmad; Yates, Charlotte; Reese, Nancy B; Williams, Keith; Garcia-Rill, Edgar

2010-10-30

This study investigated whether l-dopa (DOPA), locomotor-like passive exercise (Ex) using a motorized bicycle exercise trainer (MBET), or their combination in adult rats with complete spinal cord transection (Tx) preserves and restores low frequency-dependent depression (FDD) of the H-reflex. Adult Sprague-Dawley rats (n=56) transected at T8-9 had one of five treatments beginning 7 days after transection: Tx (transection only), Tx+Ex, Tx+DOPA, Tx+Ex+DOPA, and control (Ctl, no treatment) groups. After 30 days of treatment, FDD of the H-reflex was tested. Stimulation of the tibial nerve at 0.2, 1, 5, and 10Hz evoked an H-reflex that was recorded from plantar muscles of the hind paw. No significant differences were found at the stimulation rate of 1Hz. However, at 5Hz, FDD of the H-reflex in the Tx+Ex, Tx+DOPA and Ctl groups was significantly different from the Tx group (p<0.01). At 10Hz, all of the treatment groups were significantly different from the Tx group (p<0.01). No significant difference was identified between the Ctl and any of the treatment groups. These results suggest that DOPA significantly preserved and restored FDD after transection as effectively as exercise alone or exercise in combination with DOPA. Thus, there was no additive benefit when DOPA was combined with exercise. Copyright © 2010 Elsevier Inc. All rights reserved.

Overlapping Mechanisms of Peripheral Nerve Regeneration and Angiogenesis Following Sciatic Nerve Transection

PubMed Central

Wang, Hongkui; Zhu, Hui; Guo, Qi; Qian, Tianmei; Zhang, Ping; Li, Shiying; Xue, Chengbin; Gu, Xiaosong

2017-01-01

Peripheral nervous system owns the ability of self-regeneration, mainly in its regenerative microenvironment including vascular network reconstruction. More recently, more attentions have been given to the close relationship between tissue regeneration and angiogenesis. To explore the overlap of molecular mechanisms and key regulation molecules between peripheral nerve regeneration and angiogenesis post peripheral nerve injury, integrative and bioinformatic analysis was carried out for microarray data of proximal stumps after sciatic nerve transection in SD rats. Nerve regeneration and angiogenesis were activated at 1 day immediately after sciatic nerve transection simultaneously. The more obvious changes of transcription regulators and canonical pathways suggested a phase transition between 1 and 4 days of both nerve regeneration and angiogenesis after sciatic nerve transection. Furthermore, 16 differentially expressed genes participated in significant biological processes of both nerve regeneration and angiogenesis, a few of which were validated by qPCR and immunofluorescent staining. It was demonstrated that STAT3, EPHB3, and Cdc42 co-expressed in Schwann cells and vascular endothelial cells to play a key role in regulation of nerve regeneration and angiogenesis simultaneously response to sciatic nerve transection. We provide a framework for understanding biological processes and precise molecular correlations between peripheral nerve regeneration and angiogenesis after peripheral nerve transection. Our work serves as an experimental basis and a valuable resource to further understand molecular mechanisms that define nerve injury-induced micro-environmental variation for achieving desired peripheral nerve regeneration. PMID:29085283

Overlapping Mechanisms of Peripheral Nerve Regeneration and Angiogenesis Following Sciatic Nerve Transection.

PubMed

Wang, Hongkui; Zhu, Hui; Guo, Qi; Qian, Tianmei; Zhang, Ping; Li, Shiying; Xue, Chengbin; Gu, Xiaosong

2017-01-01

Peripheral nervous system owns the ability of self-regeneration, mainly in its regenerative microenvironment including vascular network reconstruction. More recently, more attentions have been given to the close relationship between tissue regeneration and angiogenesis. To explore the overlap of molecular mechanisms and key regulation molecules between peripheral nerve regeneration and angiogenesis post peripheral nerve injury, integrative and bioinformatic analysis was carried out for microarray data of proximal stumps after sciatic nerve transection in SD rats. Nerve regeneration and angiogenesis were activated at 1 day immediately after sciatic nerve transection simultaneously. The more obvious changes of transcription regulators and canonical pathways suggested a phase transition between 1 and 4 days of both nerve regeneration and angiogenesis after sciatic nerve transection. Furthermore, 16 differentially expressed genes participated in significant biological processes of both nerve regeneration and angiogenesis, a few of which were validated by qPCR and immunofluorescent staining. It was demonstrated that STAT3, EPHB3, and Cdc42 co-expressed in Schwann cells and vascular endothelial cells to play a key role in regulation of nerve regeneration and angiogenesis simultaneously response to sciatic nerve transection. We provide a framework for understanding biological processes and precise molecular correlations between peripheral nerve regeneration and angiogenesis after peripheral nerve transection. Our work serves as an experimental basis and a valuable resource to further understand molecular mechanisms that define nerve injury-induced micro-environmental variation for achieving desired peripheral nerve regeneration.

Novel three-sinus enlargement technique for supravalvular aortic stenosis without aortic transection.

PubMed

Yokoyama, Shinya; Nagato, Hisao; Yoshida, Yuichi; Nagasaka, Shigeo; Kaneda, Kozo; Nishiwaki, Noboru

2016-01-16

Although repair of a supravalvular aortic stenosis (SVAS) can be performed with low mortality rates, surgery for the complex form of SVAS continues to be associated with a high incidence of residual stenosis. The patient was referred to our hospital at 1 month of age and was diagnosed with aortic valve stenosis (AS) by using echocardiography. Cardiac catheterization revealed moderate AS, and subsequent left ventriculography revealed discrete stenosis of the sino-tubular junction and a narrowed proximal ascending aorta. We performed a reconstructive operation for such heart defects involving novel three-sinus and ascending aorta enlargement without aortic root transection in a 6-month-old boy. Our novel three-sinus enlargement technique is suitable for treating each type of SVAS and is a useful method for a baby particularly less than 10 kg without disturbing the growth of the ascending aorta.

Frequency-Dependent Activation of Glucose Utilization in the Superior Cervical Ganglion by Electrical Stimulation of Cervical Sympathetic Trunk

NASA Astrophysics Data System (ADS)

Yarowsky, Paul; Kadekaro, Massako; Sokoloff, Louis

1983-07-01

Electrical stimulation of the distal stump of the transected cervical sympathetic trunk produces a frequency-dependent activation of glucose utilization, measured by the deoxy[14C]glucose method, in the superior cervical ganglion of the urethane-anesthetized rat. The frequency dependence falls between 0-15 Hz; at 20 Hz the activation of glucose utilization is no greater than at 15 Hz. Deafferentation of the superior cervical ganglion by transection of the cervical sympathetic trunk does not diminish the rate of glucose utilization in the ganglion in the urethane-anesthetized rat. These results indicate that the rate of energy metabolism in an innervated neural structure is, at least in part, regulated by the impulse frequency of the electrical input to the structure, and this regulation may be an essential component of the mechanism of the coupling of metabolic activity to functional activity in the nervous system.

Microlaparoscopic technique for partial salpingectomy using bipolar electrocoagulation.

PubMed

Siegle, J C; Cartmell, L W; Rayburn, W F

2001-07-01

To describe a technique of performing a partial salpingectomy using a small-diameter (2-mm) laparoscope and bipolar electrocoagulation. Sixty consecutive women desiring permanent sterilization underwent laparoscopic partial salpingectomy using a 2-mm transumbilical laparoscope and secondary midline sites suprapubically and midway above the pubis. A midportion of the tube was coagulated using Kleppinger forceps, transected with scissors and removed using grasping forceps. Additional time to remove both coagulated tubal segments averaged 4 minutes (range, 3-10). Each segment (mean, 1.5 cm; range, 0.9-2.4 cm) was confirmed in the operating room, then histologically. The transected tubal edges were separated with no thermal injury to nearby structures and with no mesosalpingeal hemorrhage. No cases required conversion from microlaparoscopy to a traditional method, and recovery time was not prolonged. The puncture sites healed well without sutures. Successful removal of electrocoagulated tubal segments with histologic confirmation was undertaken microlaparoscopically, with minimal additional operative time.

Effects of pile-driving on harbour porpoises (Phocoena phocoena) at the first offshore wind farm in Germany

NASA Astrophysics Data System (ADS)

Dähne, Michael; Gilles, Anita; Lucke, Klaus; Peschko, Verena; Adler, Sven; Krügel, Kathrin; Sundermeyer, Janne; Siebert, Ursula

2013-06-01

The first offshore wind farm ‘alpha ventus’ in the German North Sea was constructed north east of Borkum Reef Ground approximately 45 km north off the German coast in 2008 and 2009 using percussive piling for the foundations of 12 wind turbines. Visual monitoring of harbour porpoises was conducted prior to as well as during construction and operation by means of 15 aerial line transect distance sampling surveys, from 2008 to 2010. Static acoustic monitoring (SAM) with echolocation click loggers at 12 positions was performed additionally from 2008 to 2011. SAM devices were deployed between 1 and 50 km from the centre of the wind farm. During aerial surveys, 18 600 km of transect lines were covered in two survey areas (10 934 and 11 824 km2) and 1392 harbour porpoise sightings were recorded. Lowest densities were documented during the construction period in 2009. The spatial distribution pattern recorded on two aerial surveys three weeks before and exactly during pile-driving points towards a strong avoidance response within 20 km distance of the noise source. Generalized additive modelling of SAM data showed a negative impact of pile-driving on relative porpoise detection rates at eight positions at distances less than 10.8 km. Increased detection rates were found at two positions at 25 and 50 km distance suggesting that porpoises were displaced towards these positions. A pile-driving related behavioural reaction could thus be detected using SAM at a much larger distance than a pure avoidance radius would suggest. The first waiting time (interval between porpoise detections of at least 10 min), after piling started, increased with longer piling durations. A gradient in avoidance, a gradual fading of the avoidance reaction with increasing distance from the piling site, is hence most probably a product of an incomplete displacement during shorter piling events.

Diagenesis of the Oligocene-Miocene rocks of the Upper Floridan and Intermediate aquifer systems by meteoric and mixing-zone waters in southwest Florida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weedman, S.D.; McCartan, L.

1993-03-01

Optical and SEM of samples from 6 cores of Oligocene and Miocene rocks that compose portions of the Florida and Intermediate aquifers and the intervening semiconfining unit documents meteoric and mixing-zone (seawater and fresh carbonate ground water) diagenesis inferred to have occurred over several cycles of sea level change. Dolomite, limestone, sandstone, and claystone of the Suwannee Formation and the Arcadia Formation (Hawthorn Group) were examined. Core samples from time-equivalent strata in two E--W transects in Manatee, Hardee, Highlands, Sarasota, and DeSoto Counties are estimated to be 16--33 Ma on the basis of [sup 87]Sr/[sup 86]Sr ratios from unaltered molluskmore » shells and by molluscan biostratigraphy. Lithostratigraphic correlations are based on examination of 19 cores, 62 thin sections, 60 geophysical logs, and mineralogy determined by X-ray diffraction. Diagenetic indicators that the authors tracked petrographically include shell micritization, shell dissolution, equant and (or) fibrous CaCO[sub 3] cement, neomorphism, dolomite, etched phosphate grains, echinoderm fragment syntaxial overgrowths, and amorphous silica pore lining. Infiltration of meteoric water caused dissolution of carbonate minerals, especially aragonite, and precipitation of equant calcite crystals in voids of dissolved fossils and in pore spaces between grains. The silica was precipitated as pore linings in zones having soil textures. Observed replacement of calcite by limpid dolomite is consistent with modeling predictions of mixing-zone diagenesis. Etched crystals of limpid dolomite may indicate freshwater dissolution of a mixing-zone precipitate. Mapping of regional unconformities revealed pronounced thickening and thinning of some units. Evidence of meteoric water diagenesis is observed in the upper 600 ft of the transects examined. Evidence of mixing-zone diagenesis is observed at varying depths, but appears to increase in abundance and thickness toward the west.« less

(234)U/(238)U signatures associated with uranium ore bodies: part 1 Ranger 3.

PubMed

Lowson, Richard T; McIntyre, Mark G

2013-04-01

The Ranger 3 ore body is an early Proterozoic U ore body in the Alligator Rivers U province, Northern Territory, Australia. It has surface expression with a redox front located between 30 and 50 m below the surface. The ground water U concentration and (234)U/(238)U AR signature in the top 10 m of the weathered zone are reported for 357 samples collected over 4 wet seasons, at 5 depths, along a transect in-line with the hydraulic gradient and along the centre line of the ore body and its associated dispersion halo. The results show that the weathered zone displays a general U isotope feature for this type of ore body with the (234)U/(238)U AR for the ground water and amorphous phase of the solid matrix being less than 1. The ground water (234)U/(238)U AR is independent of the annual monsoonal climate and depth within the range surface to 10 m. In the vicinity of the U ore body the ground water (234)U/(238)U AR is 0.75 and is very similar to the (234)U/(238)U AR of the amorphous phase of the solid (0.76). The (234)U/(238)U ARs of the amorphous phase and ground water rise and separate to values of 0.88 and 1.02 at the end of the transect. The rise and separation in (234)U/(238)U AR are interpreted as evidence that the source of the U in the ground water is from the water-soluble sub-phase of the amorphous phase and that the ground water flow is too fast to allow the processes occurring across the solid-water interface to reach chemical equilibrium. The data set is a robust characterisation of the coarse and fine detail of the (234)U/(238)U AR signature in the weathered zone of U ore bodies. Copyright © 2012 Elsevier Ltd. All rights reserved.

A standardized safe hepatectomy; selective Glissonean transection using endolinear stapling devices.

PubMed

Fujii, Masahiko; Shimada, Mitsuo; Satoru, Imura; Morine, Yuji; Ikemoto, Tetsuya; Soejima, Yuji

2007-01-01

Selective clamping of Glisson's pedicle at the hilum is effective for systematized hepatectomy. Because of the development of stapling devices, a Glissonean transection using a surgical stapler has been used widely. However, the risk of accidental stapling of the biliary confluence still remains. In this paper we report about a case that underwent selective Glissonean transection using an endolinear stapling device. We used this standardized technique in five patients without any major complications. The particular case to which we refer was a 71-year-old woman with hepatocellular carcinoma in the right lobe. The anterior and posterior branches of Glisson's pedicle were independently divided using an endolinear stapling device. The right hepatic lobectomy was achieved with little bleeding and in addition there was a shortened operation time and the postoperative course was uneventful. In the patient with liver cirrhosis, postoperative complications often related to liver failure. We herein advocate a standardized safe hepatectomy using endolinear stapling devices. We believe that the shortened operative time and decreased risk of complications by selective Glissonean transection as well as hepatic vein transection using stapling devices contribute to the improved short-term outcome.

Healing process of vascular cutting edge using an Nd:YAG laser bipolar dissector.

PubMed

Morita, T; Ishida, K; Ookubo, K; Tanaka, K; Nakamura, H; Daikuzono, N

1995-08-01

The wound healing process was histopathologically investigated in a rabbit femoral artery (n = 48) after transection using a laser bipolar dissector (LBD, 1064nm the Nd:YAG bipolar contact laser) with laser power of 13W in 0.5-sec pulses. The cutting edges were harvested immediately (n = 6) and at 1 (n = 6), 4 (n = 6), and 7 (n = 6) days, 2 (n = 6), 3 (n = 6), and 4 (n = 6) weeks, and 6 months (n = 6), and evaluated by light microscopy. During the postoperative period, no perforation was seen in the 48 transected sites with the LBD. The healing process after LBD transection was accomplished within 2 weeks by organization of the intraluminal thrombus and by the formation of granulation tissue outside the adventitia of vessels. Characteristic morphological changes after LBD transection were recognized in the tapering area, i.e., cartilage and bone formation. Cartilaginous foci (n = 6) were observed in the media at 4 weeks after transection, and osseous foci (n = 3) in subendothelial space at 6 months. These observations may suggest that the heterotopic cartilaginous and osseous metaplasia of a vessel wall may be a result of the biostimulative effects of the Nd:YAG laser.

Transection of the innominate artery for tracheomalacia caused by persistent opisthotonus.

PubMed

Tsugawa, Chikara; Ono, Yasuyuki; Nishijima, Eiji; Takamizawa, Shigeru; Satoh, Shiiki; Muraji, Toshihiro

2004-01-01

Patients with cerebral palsy often develop opisthotonus. The trachea may be pinched between the innominate artery and the cervical spine. This compartmentalized thoracic inlet results in severe tracheomalacia. We successfully released tracheal compression by transection of the innominate artery. In case 1, a 4-year-old girl with cerebral palsy and opisthotonus was admitted due to respiratory distress. Bronchoscopy revealed severe tracheomalacia 2 cm above the carina. An endotracheal stent was placed through a tracheostomy. Two months later, she developed tracheal bleeding and bronchoscopy demonstrated a trachea-innominate artery fistula. Magnetic resonance brain angiography showed the presence of Willis' circle, and transection of the innominate artery was justified. This was done through a low cervical skin incision. In case 2, a 6-year-old boy with cerebral palsy and opisthotonus had long-standing respiratory distress. Ventilatory support did not resolve the symptoms. The innominate artery was transected in the same fashion as in the first case. Case 1 has been free from respiratory distress for 4 months and case 2 for 3 years. Our experience suggests that the combination of tracheomalacia, opisthotonus causes severe respiratory distress. Transection of the innominate artery is a useful therapeutic strategy to release airway obstruction in this condition.

Estimating Dungeness crab (Cancer magister) abundance: Crab pots and dive transects compared

USGS Publications Warehouse

Taggart, S. James; O'Clair, Charles E.; Shirley, Thomas C.; Mondragon, Jennifer

2004-01-01

Dungeness crabs (Cancer magister) were sampled with commercial pots and counted by scuba divers on benthic transects at eight sites near Glacier Bay, Alaska. Catch per unit of effort (CPUE) from pots was compared to the density estimates from dives to evaluate the bias and power of the two techniques. Yearly sampling was conducted in two seasons: April and September, from 1992 to 2000. Male CPUE estimates from pots were significantly lower in April than in the following September; a step-wise regression demonstrated that season accounted for more of the variation in male CPUE than did temperature. In both April and September, pot sampling was significantly biased against females. When females were categorized as ovigerous and nonovigerous, it was clear that ovigerous females accounted for the majority of the bias because pots were not biased against nonovigerous females. We compared the power of pots and dive transects in detecting trends in populations and found that pots had much higher power than dive transects. Despite their low power, the dive transects were very useful for detecting bias in our pot sampling and in identifying the optimal times of year to sample so that pot bias could be avoided.

Evaluation of aerial transects for counting winter mallards

USGS Publications Warehouse

Reinecke, K.J.; Brown, M.W.; Nassar, J.R.

1992-01-01

Winter waterfowl surveys rarely use sampling methods, and little is known about the precision and biases of their population estimates. Consequently, we developed aerial transect surveys (n=5) in 4 strata comprising 16 substrata in the lower Mississippi Alluvial Valley during winters 1987-88 through 1989-90 to estimate mallard (Anas platyrhynchos) population indices and determine regional patterns of habitat use. Mallard population indices ranged from 1,147,628 (SE=192,341) in December 1988 to 1,790,708 (SE=179,406) in January 1988. Coefficients of variation (CV's) for early winter surveys averaged 0.15 and those for late winter surveys averaged 0.10. During early winter, 59-69% of mallards were on wetlands with water regimes managed for waterfowl; whereas in late winter, 52-79% used wetlands with unmanaged water regimes. Late winter was wet during 1987-88 and 1988-89, and most mallards (62-68%) were on naturally flooded croplands. Use of forested wetlands (3-11%) and moist-soil habitats (3-29%) varied among surveys but was not correlated with water conditions. The number of mallards using naturally flooded croplands (e.g., >1,100,000 in Jan 1988) illustrated the extent of habitat use on private lands. We recommend transect surveys (e.g., 5-yr intervals) for evaluating responses of mallard populations to management programs and as a sampling framework for integrating regional waterfowl research and management data.

Vegetation Cover based on Eagleson's Ecohydrological Optimality in Northeast China Transect (NECT)

NASA Astrophysics Data System (ADS)

Cong, Z.; Mo, K.; Qinshu, L.; Zhang, L.

2016-12-01

Vegetation is considered as the indicator of climate, thus the study of vegetation growth and distribution is of great importance to cognize the ecosystem construction and functions. Vegetation cover is used as an important index to describe vegetation conditions. In Eagleson's ecohydrological optimality, the theoretical optimal vegetation cover M* can be estimated by solving water balance equations. In this study, the theory is applied in the Northeast China Transect (NECT), one of International Geosphere-Biosphere Programs (IGBP) terrestrial transects. The spatial distribution of actual vegetation cover M, which is derived from Normalized Vegetation Index (NDVI) from Moderate-resolution Imaging Spectroradiometer (MODIS), shows that there is a significant gradient ranging from 1 in the east forests to 0 in the west desert. The result indicates that the theoretical M* fits the actual M well (for forest, M* = 0.822 while M = 0.826; for grassland, M* = 0.353 while M = 0.352; the correlation coefficient between M and M* is 0.81). The reasonable calculated proportion of water balance components further demonstrates the applicability of the ecohydrological optimality theory. M* increases with the increase of LAI, leaf angle, stem fraction and temperature, and decreases with the increase of precipitation amount. This method offers the possibility to analyze the impacts of climate change to vegetation cover quantitatively, thus providing advices for eco-restoration projects.

Optimising monitoring efforts for secretive snakes: a comparison of occupancy and N-mixture models for assessment of population status.

PubMed

Ward, Robert J; Griffiths, Richard A; Wilkinson, John W; Cornish, Nina

2017-12-22

A fifth of reptiles are Data Deficient; many due to unknown population status. Monitoring snake populations can be demanding due to crypsis and low population densities, with insufficient recaptures for abundance estimation via Capture-Mark-Recapture. Alternatively, binomial N-mixture models enable abundance estimation from count data without individual identification, but have rarely been successfully applied to snake populations. We evaluated the suitability of occupancy and N-mixture methods for monitoring an insular population of grass snakes (Natrix helvetica) and considered covariates influencing detection, occupancy and abundance within remaining habitat. Snakes were elusive, with detectability increasing with survey effort (mean: 0.33 ± 0.06 s.e.m.). The probability of a transect being occupied was moderate (mean per kilometre: 0.44 ± 0.19 s.e.m.) and increased with transect length. Abundance estimates indicate a small threatened population associated to our transects (mean: 39, 95% CI: 20-169). Power analysis indicated that the survey effort required to detect occupancy declines would be prohibitive. Occupancy models fitted well, whereas N-mixture models showed poor fit, provided little extra information over occupancy models and were at greater risk of closure violation. Therefore we suggest occupancy models are more appropriate for monitoring snakes and other elusive species, but that population trends may go undetected.

Seafloor video footage and still-frame grabs from U.S. Geological Survey cruises in Hawaiian nearshore waters

USGS Publications Warehouse

Gibbs, Ann E.; Cochran, Susan A.; Tierney, Peter W.

2013-01-01

Underwater video footage was collected in nearshore waters (<60-meter depth) off the Hawaiian Islands from 2002 to 2011 as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Pacific Coral Reef Project, to improve seafloor characterization and for the development and ground-truthing of benthic-habitat maps. This report includes nearly 53 hours of digital underwater video footage collected during four USGS cruises and more than 10,200 still images extracted from the videos, including still frames from every 10 seconds along transect lines, and still frames showing both an overview and a near-bottom view from fixed stations. Environmental Systems Research Institute (ESRI) shapefiles of individual video and still-image locations, and Google Earth kml files with explanatory text and links to the video and still images, are included. This report documents the various camera systems and methods used to collect the videos, and the techniques and software used to convert the analog video tapes into digital data in order to process the images for optimum viewing and to extract the still images, along with a brief summary of each survey cruise.

Trial aerial survey of sea otters in Prince William Sound, Alaska, 1993. Restoration project 93043-2. Exxon Valdez oil spill restoration project final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bodkin, J.L.; Udevitz, M.S.

1996-05-01

We developed an aerial survey method for sea otters, using a strip transect design where otters observed in a strip along one side of the aircraft are counted. Two strata are sampled, one lies close to shore and/or in shallow. The other strata lies offshore and over deeper water. We estimate the proportion of otters not seen by the observer by conducting intensive searches of units (ISU`s) within strips when otters are observed. The first study found no significant differences in sea otter detection probabilities between ISU`s initiated by the sighting of an otter group compared to systematically located ISU`s.more » The second study consisted of a trial survey of all of Prince William Sound, excluding Orca Inlet. The survey area consisted of 5,017 sq km of water between the shore line and an offshore boundary based on shoreline physiography, the 100 m depth contour or a distance of 2 km from the shore. From 5-13 August 1993, two observers surveyed 1,023 linear km of high density sea otter habitat and 355 linear km of low density habitat.« less

Bathymetric map of the north part of Great Salt Lake, Utah, 2006

USGS Publications Warehouse

Baskin, Robert L.; Turner, Jane

2006-01-01

The U.S. Geological Survey, in cooperation with the Utah Department of Natural Resources, Division of Forestry, Fire, and State Lands, collected bathymetric data for the north part of Great Salt Lake during the spring and early summer of 2006 using a single beam, high-definition fathometer and real-time differential global positioning system. Approximately 5.2 million depth readings were collected along more than 765 miles of survey transects for construction of this map. Sound velocities were obtained in conjunction with the bathymetric data to provide time-of-travel corrections to the depth calculations. Data were processed using commercial hydrographic software and exported into a geographic information system (GIS) software for mapping. Due to the shallow nature of the lake and the limitations of the instrumentation, contours above an altitude of 4,194 feet were digitized from existing USGS 1:24,000 source-scale digital line graph data. The Behrens Trench is approximately located.For additional information on methods used to derive the bathymetric contours for this map, please see Baskin, Robert L., 2006, Calculation of area and volume for the North Part of Great Salt Lake, Utah, U.S. Geological Survey Open-File Report OFR–2006–1359

Diversity and Abundance of Chlorophyta in Krakal Beach, Gunung Kidul, Yogyakarta

NASA Astrophysics Data System (ADS)

Putri, A. C.; Nugroho, I. C.; Firdaus, N. U. N.; Puspita, N. O. J.; Fajrin, S. A. R.; Hamzah, S. D. A.

2017-10-01

Chlorophyta plays an important role in energy flow as the main producer in marine food chain, material circulation, bioaccumulation, and bio-indicator in the intertidal zone. Several genera of Chlorophyta have been used by local society around coastal area of Gunung Kidul, Yogyakarta as local product, but the research about diversity and abundance information of Chlorophyta in Krakal beach was not yet understood. The aim of this study is to gain the information about diversity and abundancy of Chlorophyta in Krakal Beach, Gunung Kidul,Yogyakarta. This research was conducted in March 11th 2017. This research utilizes Line Transect and Stratified Random Sampling method which is used 1x1 m plot. There are six genera of Chlorophyta have been identified in this research, such as Chaetomorpha sp.; Boergesenia sp; Ulva sp.; Cladophora sp.; Enteromorpha sp.; and Halicystis sp. From 6 genera of Chlorophyta, the highest genera coverage is Enteromorpha sp. (9.88%). This research is expected to record data of macroalgae abundance especially Chlorophyta, in Krakal Beach. By this research, monitoring of macroalgae could be done and supported by government and local people to maintain the sustainability of Chlorophyta.

Evaluation of natural foci of Panstrongylus megistus in a forest fragment in Porto Alegre, State of Rio Grande do Sul, Brazil.

PubMed

Santos, José Eloy Dos; Viola, Mariana Gubert; Lorosa, Elias Seixas; Machado, Evandro Marques de Menezes; Ruas Neto, Antonio Leite; Corseuil, Elio

2013-01-01

Panstrongylus megistus is commonly found in wild environments of the State of Rio Grande do Sul, Brazil. The aim of this study was to characterize the network of refuges used by triatomine in a forest fragment of Porto Alegre and to identify Trypanosoma cruzi infection, associated hosts and the epidemiological importance of both hosts and triatomines. Techniques including the spool-and-line method and active searching (transects) were used to identify natural foci. The food source for each triatomine was determined using the precipitin test, and the infection of marsupials was determined by xenodiagnosis. A total of 33 adults (domestic environment) and 27 nymphs (wild environment) of P. megistus were found in addition to 43 Didelphis albiventris specimens. The infection rates of triatomine adults, triatomine nymphs and opossums with T. cruzi I were 64%, 73% and 69%, respectively. Birds, rodents and opossums were the main resources used by triatomine. This work presents the first characterization of a natural focus of P. megistus in Rio Grande do Sul. The natural characteristics of this focus and its implication in the transmission of T. cruzi are discussed.

Geographic distributions and ecology of ornamental Curcuma (Zingiberaceae) in Northeastern Thailand.

PubMed

Khumkratok, Sutthira; Boongtiang, Kriangsuk; Chutichudet, Prasit; Pramaul, Pairot

2012-10-01

The genus Curcuma is a very important economic plant. Members of this genus were used as food, medicine and ornament plants. The objectives of this study were to examine the geographic distributions and ecological conditions in the natural habitats of Curcuma in Northeastern Thailand. Species diversity was examined using the line transect method. Ecological conditions of the species were examined using a sampling plot of 20 x 20 m. A total of five species were found including Curcuma angustifolia Roxb., C. alismatifolia Gagnep., C. gracillima Gagnep., C. parviflora Wall. and C. rhabdota. These species were in an altitudinal range between 290 m and 831 m above sea level. Four species (C. angustifolia, C. alismatifolia, C. gracillima and C. rhabdota) were distributed in open gaps in dry dipterocarp forest. One species, C. parviflora was found in the contact zone between dry dipterocarp and bamboo (Gigantochloa sp.) forest. C. rhabdota was found only in a habitat with high humidity and shading along the Thailand-Lao PDR border. Significant ecological conditions of the natural habitats of these Curcuma species were identified. Altitude is the most important factor when determining the geographic distributions of these Curcuma species in Northeastern Thailand.

Groundwater and surface-water interaction, water quality, and processes affecting loads of dissolved solids, selenium, and uranium in Fountain Creek near Pueblo, Colorado, 2012–2014

USGS Publications Warehouse

Arnold, L. Rick; Ortiz, Roderick F.; Brown, Christopher R.; Watts, Kenneth R.

2016-11-28

In 2012, the U.S. Geological Survey, in cooperation with the Arkansas River Basin Regional Resource Planning Group, initiated a study of groundwater and surface-water interaction, water quality, and loading of dissolved solids, selenium, and uranium to Fountain Creek near Pueblo, Colorado, to improve understanding of sources and processes affecting loading of these constituents to streams in the Arkansas River Basin. Fourteen monitoring wells were installed in a series of three transects across Fountain Creek near Pueblo, and temporary streamgages were established at each transect to facilitate data collection for the study. Groundwater and surface-water interaction was characterized by using hydrogeologic mapping, groundwater and stream-surface levels, groundwater and stream temperatures, vertical hydraulic-head gradients and ratios of oxygen and hydrogen isotopes in the hyporheic zone, and streamflow mass-balance measurements. Water quality was characterized by collecting periodic samples from groundwater, surface water, and the hyporheic zone for analysis of dissolved solids, selenium, uranium, and other selected constituents and by evaluating the oxidation-reduction condition for each groundwater sample under different hydrologic conditions throughout the study period. Groundwater loads to Fountain Creek and in-stream loads were computed for the study area, and processes affecting loads of dissolved solids, selenium, and uranium were evaluated on the basis of geology, geochemical conditions, land and water use, and evapoconcentration.During the study period, the groundwater-flow system generally contributed flow to Fountain Creek and its hyporheic zone (as a single system) except for the reach between the north and middle transects. However, the direction of flow between the stream, the hyporheic zone, and the near-stream aquifer was variable in response to streamflow and stage. During periods of low streamflow, Fountain Creek generally gained flow from groundwater. However, during periods of high streamflow, the hydraulic gradient between groundwater and the stream temporarily reversed, causing the stream to lose flow to groundwater.Concentrations of dissolved solids, selenium, and uranium in groundwater generally had greater spatial variability than surface water or hyporheic-zone samples, and constituent concentrations in groundwater generally were greater than in surface water. Constituent concentrations in the hyporheic zone typically were similar to or intermediate between concentrations in groundwater and surface water. Concentrations of dissolved solids, selenium, uranium, and other constituents in groundwater samples collected from wells located on the east side of the north monitoring well transect were substantially greater than for other groundwater, surface-water, and hyporheic-zone samples. With one exception, groundwater samples collected from wells on the east side of the north transect exhibited oxic to mixed (oxic-anoxic) conditions, whereas most other groundwater samples exhibited anoxic to suboxic conditions. Concentrations of dissolved solids, selenium, and uranium in surface water generally increased in a downstream direction along Fountain Creek from the north transect to the south transect and exhibited an inverse relation to streamflow with highest concentration occurring during periods of low streamflow and lowest concentrations occurring during periods of high streamflow.Groundwater loads of dissolved solids, selenium, and uranium to Fountain Creek were small because of the small amount of groundwater flowing to the stream under typical low-streamflow conditions. In-stream loads of dissolved solids, selenium, and uranium in Fountain Creek varied by date, primarily in relation to streamflow at each transect and were much larger than computed constituent loads from groundwater. In-stream loads generally decreased with decreases in streamflow and increased as streamflow increased. In-stream loads of dissolved solids and selenium increased between the north and middle transects but generally decreased between the middle and south transects. By contrast, uranium loads generally decreased between the north and middle transects but increased between the middle and south transects. In-stream load differences between transects appear primarily to be related to differences in streamflow. However, because groundwater typically flows to Fountain Creek under low-flow conditions, and groundwater has greater concentrations of dissolved solids, selenium, and uranium than surface water in Fountain Creek, increases in loads between transects likely are affected by inflow of groundwater to the stream, which can account for a substantial proportion of the in-stream load difference between transects. When loads decreased between transects, the primary cause likely was decreased streamflow as a result of losses to groundwater and flow through the hyporheic zone. However, localized groundwater inflow likely attenuated the magnitude by which the in-stream loads decreased.The combination of localized soluble geologic sources and oxic conditions likely is the primary reason for the occurrence of high concentrations of dissolved solids, selenium, and uranium in groundwater on the east side of the north monitoring well transect. To evaluate conditions potentially responsible for differences in water quality and redox conditions, physical characteristics such as depth to water, saturated thickness, screen depth below the water table, screen height above bedrock, and aquifer hydraulic conductivity were compared by using Wilcoxon rank-sum tests. Results indicated no significant difference between depth to water, screen height above bedrock, and hydraulic conductivity for groundwater samples collected from wells on the east side of the north transect and groundwater samples from all other wells. However, saturated thickness and screen depth below the water table both were significantly smaller for groundwater samples collected from wells on the east side of the north transect than for groundwater samples from other wells, indicating that these characteristics might be related to the elevated constituent concentrations found at that location. Similarly, saturated thickness and screen depth below the water table were significantly smaller for groundwater samples under oxic or mixed (oxic-anoxic) conditions than for those under anoxic to suboxic conditions.The greater constituent concentrations at wells on the east side of the north transect also could, in part, be related to groundwater discharge from an unnamed alluvial drainage located directly upgradient from that location. Although the quantity and quality of water discharging from the drainage is not known, the drainage appears to collect water from a residential area located upgradient to the east of the wells, and groundwater could become concentrated in nitrate and other dissolved constituents before flowing through the drainage. High levels of nitrate, whether from anthropogenic or natural geologic sources, could promote more soluble forms of selenium and other constituents by affecting the redox condition of groundwater. Whether oxic conditions at wells on the east side of the north transect are the result of physical characteristics or of groundwater inflow from the alluvial drainage, the oxic conditions appear to cause increased dissolution of minerals from the shallow shale bedrock at that location. Because ratios of hydrogen and oxygen isotopes indicate evaporation likely has not had a substantial effect on groundwater, constituent concentrations at that location likely are not the result of evapoconcentration. 

Image analysis of anatomical traits in stalk transections of maize and other grasses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heckwolf, Sven; Heckwolf, Marlies; Kaeppler, Shawn M.

Grass stalks architecturally support leaves and reproductive structures, functionally support the transport of water and nutrients, and are harvested for multiple agricultural uses. Research on these basic and applied aspects of grass stalks would benefit from improved capabilities for measuring internal anatomical features. In particular, methods suitable for phenotyping populations of plants are needed.

Image analysis of anatomical traits in stalk transections of maize and other grasses

DOE PAGES

Heckwolf, Sven; Heckwolf, Marlies; Kaeppler, Shawn M.; ...

2015-04-09

Grass stalks architecturally support leaves and reproductive structures, functionally support the transport of water and nutrients, and are harvested for multiple agricultural uses. Research on these basic and applied aspects of grass stalks would benefit from improved capabilities for measuring internal anatomical features. In particular, methods suitable for phenotyping populations of plants are needed.

Long-Term Effects of Beach Nourishment on the Benthic Fauna of Panama City Beach, Florida.

DTIC Science & Technology

1982-01-01

gradual. The continental shelf in this area is not nearly as wide as it is in most areas of the Gulf of Mexico. i0 - ------ The segment of gulf...Lookout Street and Spyglass Street; transect 4 is offshore of the Holiday Inn West; transect 5 is offshore of the Fiesta Motel; transect 6 is off- shore...Region, Puerto Rico and the Virgin Islands," Atlanta, Ga., 1971. WHITTAKER, R.H., "Gradient Analysis of Vegetation," Biological Review, Vol. 49, 1967

Estimating Water Fluxes Across the Sediment-Water Interface in the Lower Merced River, California

USGS Publications Warehouse

Zamora, Celia

2008-01-01

The lower Merced River Basin was chosen by the U.S. Geological Survey?s (USGS) National Water Quality Assessment Program (NAWQA) to be included in a national study on how hydrological processes and agricultural practices interact to affect the transport and fate of agricultural chemicals. As part of this effort, surface-water?ground-water (sw?gw) interactions were studied in an instrumented 100-m reach on the lower Merced River. This study focused on estimating vertical rates of exchange across the sediment?water interface by direct measurement using seepage meters and by using temperature as a tracer coupled with numerical modeling. Temperature loggers and pressure transducers were placed in monitoring wells within the streambed and in the river to continuously monitor temperature and hydraulic head every 15 minutes from March 2004 to October 2005. One-dimensional modeling of heat and water flow was used to interpret the temperature and head observations and deduce the sw?gw fluxes using the USGS numerical model, VS2DH, which simulates variably saturated water flow and solves the energy transport equation. Results of the modeling effort indicate that the Merced River at the study reach is generally a slightly gaining stream with small head differences (cm) between the surface water and ground water, with flow reversals occurring during high streamflow events. The average vertical flux across the sediment?water interface was 0.4?2.2 cm/day, and the range of hydraulic conductivities was 1?10 m/day. Seepage meters generally failed to provide accurate data in this high-energy system because of slow seepage rates and a moving streambed resulting in scour or burial of the seepage meters. Estimates of streambed hydraulic conductivity were also made using grain-size analysis and slug tests. Estimated hydraulic conductivity for the upstream transect determined using slug tests ranged from 40 to 250 m/day, whereas the downstream transect ranged from 10 to 100 m/day. The range in variability was a result of position along each transect. A relative percent difference was used to describe the variability in estimates of hydraulic conductivity by grain-size analysis and slug test. Variability in applied methods at the upstream transect ranged from 0 to 9 percent, whereas the downstream transect showed greater variability, with a range of 80 to 133 percent.

Fast and low-cost method for VBES bathymetry generation in coastal areas

NASA Astrophysics Data System (ADS)

Sánchez-Carnero, N.; Aceña, S.; Rodríguez-Pérez, D.; Couñago, E.; Fraile, P.; Freire, J.

2012-12-01

Sea floor topography is key information in coastal area management. Nowadays, LiDAR and multibeam technologies provide accurate bathymetries in those areas; however these methodologies are yet too expensive for small customers (fishermen associations, small research groups) willing to keep a periodic surveillance of environmental resources. In this paper, we analyse a simple methodology for vertical beam echosounder (VBES) bathymetric data acquisition and postprocessing, using low-cost means and free customizable tools such as ECOSONS and gvSIG (that is compared with industry standard ArcGIS). Echosounder data was filtered, resampled and, interpolated (using kriging or radial basis functions). Moreover, the presented methodology includes two data correction processes: Monte Carlo simulation, used to reduce GPS errors, and manually applied bathymetric line transformations, both improving the obtained results. As an example, we present the bathymetry of the Ría de Cedeira (Galicia, NW Spain), a good testbed area for coastal bathymetry methodologies given its extension and rich topography. The statistical analysis, performed by direct ground-truthing, rendered an upper bound of 1.7 m error, at 95% confidence level, and 0.7 m r.m.s. (cross-validation provided 30 cm and 25 cm, respectively). The methodology presented is fast and easy to implement, accurate outside transects (accuracy can be estimated), and can be used as a low-cost periodical monitoring method.

Identifying Marine Copper-Binding Ligands in Seawater

NASA Astrophysics Data System (ADS)

Whitby, H.; Hollibaugh, J. T.; Maldonado, M. T.; Ouchi, S.; van den Berg, S. M.

2016-02-01

Complexation reactions are important because they affect the bioavailability of trace metals such as copper and iron. For example, organic complexation can determine whether copper is a limiting or a toxic micronutrient at natural levels. Copper competes with iron for complexing ligands, and when iron is limiting, copper can also substitute for iron in some metabolic pathways. The speciation of copper can be measured using complexing capacity titrations, which provide the concentration of individual ligand classes (L1, L2 etc.) and the complex stabilities (log K). Using methods recently developed in our laboratory, we show that the ligands within these classes can be measured independently of titrations, thus confirming the titration method and simultaneously identifying the ligands within each class. Thiols were identified as the L1 ligand class and humic compounds as the weaker L2 class in samples from coastal Georgia, USA, collected monthly from April to December. Log K values of the ligand complexes were consistent with values expected for thiols and humic substances. Recent results from culture studies and from samples collected along Line P, a coastal - oceanic transect in the HNLC region of the NE subarctic Pacific, will be presented in comparison to the estuarine results. This comparison will help to broaden our perspective on copper complexation and the ligands responsible, furthering our understanding of ligand sources and life cycles.

Measurement of amino acid levels in the vitreous humor of rats after chronic intraocular pressure elevation or optic nerve transection.

PubMed

Levkovitch-Verbin, Hana; Martin, Keith R G; Quigley, Harry A; Baumrind, Lisa A; Pease, Mary Ellen; Valenta, Danielle

2002-10-01

To investigate whether the levels of free amino acids and protein in the vitreous of rat eyes are altered with chronic intraocular pressure (IOP) elevation or after optic nerve transection. The concentrations of 20 amino acids in the vitreous humor were measured by high-performance liquid chromatography in both eyes of 41 rats with unilateral IOP elevation induced by translimbal photocoagulation. Eyes were studied 1 day and 1, 2, 4, and 9 weeks after initial IOP elevation. The same amino acids were measured in 41 rats 1 day and 2, 4, and 9 weeks after unilateral transection of the orbital optic nerve. The intravitreal protein level was assayed in additional 22 rats with IOP elevation and 12 rats after nerve transection. Two masked observers evaluated the amount of optic nerve damage with a semiquantitative, light-microscopic technique. In rats with experimental glaucoma, amino acid concentrations were unchanged 1 day after treatment. At 1 week, 4 of 20 amino acids (aspartate, proline, alanine, and lysine) were higher than in control eyes ( < or = 0.01), but this difference was nonsignificant after Bonferroni correction for multiple simultaneous amino acid comparisons (none achieved < 0.0025). No amino acid was significantly different from control in the nerve transection groups (all > 0.05). Vitreous protein level was significantly higher in glaucomatous eyes than their paired controls at 1 day ( < 0.0001) and 1 week ( < 0.002). One day and 1 week after optic nerve transection, vitreal proteins were significantly elevated compared with control eyes from untreated animals ( < 0.0020 and < 0.0022, respectively), though not compared with their fellow eyes ( = 0.25 and 0.10). Chronic experimental glaucoma and transection of the optic nerve increase the amount of protein in the rat vitreous above control levels. In the vitreous of rats with experimental glaucoma, a number of free amino acids were transiently elevated to a modest degree, but no significant difference in vitreous glutamate concentration was detected ( > 0.01).

Role of spared pathways in locomotor recovery after body-weight-supported treadmill training in contused rats.

PubMed

Singh, Anita; Balasubramanian, Sriram; Murray, Marion; Lemay, Michel; Houle, John

2011-12-01

Body-weight-supported treadmill training (BWSTT)-related locomotor recovery has been shown in spinalized animals. Only a few animal studies have demonstrated locomotor recovery after BWSTT in an incomplete spinal cord injury (SCI) model, such as contusion injury. The contribution of spared descending pathways after BWSTT to behavioral recovery is unclear. Our goal was to evaluate locomotor recovery in contused rats after BWSTT, and to study the role of spared pathways in spinal plasticity after BWSTT. Forty-eight rats received a contusion, a transection, or a contusion followed at 9 weeks by a second transection injury. Half of the animals in the three injury groups were given BWSTT for up to 8 weeks. Kinematics and the Basso-Beattie-Bresnahan (BBB) test assessed behavioral improvements. Changes in Hoffmann-reflex (H-reflex) rate depression property, soleus muscle mass, and sprouting of primary afferent fibers were also evaluated. BWSTT-contused animals showed accelerated locomotor recovery, improved H-reflex properties, reduced muscle atrophy, and decreased sprouting of small caliber afferent fibers. BBB scores were not improved by BWSTT. Untrained contused rats that received a transection exhibited a decrease in kinematic parameters immediately after the transection; in contrast, trained contused rats did not show an immediate decrease in kinematic parameters after transection. This suggests that BWSTT with spared descending pathways leads to neuroplasticity at the lumbar spinal level that is capable of maintaining locomotor activity. Discontinuing training after the transection in the trained contused rats abolished the improved kinematics within 2 weeks and led to a reversal of the improved H-reflex response, increased muscle atrophy, and an increase in primary afferent fiber sprouting. Thus continued training may be required for maintenance of the recovery. Transected animals had no effect of BWSTT, indicating that in the absence of spared pathways this training paradigm did not improve function.

Mollusks of Manuel Antonio National Park, Pacific Costa Rica.

PubMed

Willis, S; Cortés, J

2001-12-01

The mollusks in Manuel Antonio National Park on the central section of the Pacific coast of Costa Rica were studied along thirty-six transects done perpendicular to the shore, and by random sampling of subtidal environments, beaches and mangrove forest. Seventy-four species of mollusks belonging to three classes and 40 families were found: 63 gastropods, 9 bivalves and 2 chitons, during this study in 1995. Of these, 16 species were found only as empty shells (11) or inhabited by hermit crabs (5). Forty-eight species were found at only one locality. Half the species were found at one site, Puerto Escondido. The most diverse habitat was the low rocky intertidal zone. Nodilittorina modesta was present in 34 transects and Nerita scabricosta in 30. Nodilittorina aspera had the highest density of mollusks in the transects. Only four transects did not clustered into the four main groups. The species composition of one cluster of transects is associated with a boulder substrate, while another cluster of transects associates with site. Two clusters were not associated to any of the factors recorded. Some species were present in previous studies but absent in 1995, while others were absent in the previous studies but found in 1995. For example, Siphonaria gigas was present in 1995 in many transects with a relatively high density, but absent in 1962, probably due to human predation before the establishment of the park. Including this study, a total of 97 species of mollusks in three classes and 45 families have been reported from Manuel Antonio National Park. Sixty-nine species are new reports for the area: 53 gastropods, 14 bivalves and 2 chitons. There are probably more species of mollusks at Manuel Antonio National Park, than the 97 reported here, because some areas have not been adequately sampled (e.g., deep environments) and many micro-mollusks could not be identified.

ACL/MCL transection affects knee ligament insertion distance of healing and intact ligaments during gait in the Ovine model.

PubMed

Tapper, Janet E; Funakoshi, Yusei; Hariu, Mitsuhiro; Marchuk, Linda; Thornton, Gail M; Ronsky, Janet L; Zernicke, Ron; Shrive, Nigel G; Frank, Cyril B

2009-08-25

The objective of this study was to assess the impact of combined transection of the anterior cruciate and medial collateral ligaments on the intact and healing ligaments in the ovine stifle joint. In vivo 3D stifle joint kinematics were measured in eight sheep during treadmill walking (accuracy: 0.4+/-0.4mm, 0.4+/-0.4 degrees ). Kinematics were measured with the joint intact and at 2, 4, 8, 12, 16 and 20 weeks after either surgical ligament transection (n=5) or sham surgery without transection (n=3). After sacrifice at 20 weeks, the 3D subject-specific bone and ligament geometry were digitized, and the 3D distances between insertions (DBI) of ligaments during the dynamic in vivo motion were calculated. Anterior cruciate ligament/medial collateral ligament (ACL/MCL) transection resulted in changes in the DBI of not only the transected ACL, but also the intact lateral collateral ligament (LCL) and posterior cruciate ligament (PCL), while the DBI of the transected MCL was not significantly changed. Increases in the maximal ACL DBI (2 week: +4.2mm, 20 week: +5.7mm) caused increases in the range of ACL DBI (2 week: 3.6mm, 20 week: +3.8mm) and the ACL apparent strain (2 week: +18.9%, 20 week: +24.0%). Decreases in the minimal PCL DBI (2 week: -3.2mm, 20 week: -4.3mm) resulted in increases in the range of PCL DBI (2 week: +2.7mm, 20 week: +3.2mm). Decreases in the maximal LCL DBI (2 week: -1.0mm, 20 week: -2.0mm) caused decreased LCL apparent strain (2 week: -3.4%, 20 week: -6.9%). Changes in the mechanical environment of these ligaments may play a significant role in the biological changes observed in these ligaments.

Axon regeneration can facilitate or suppress hindlimb function after olfactory ensheathing glia transplantation.

PubMed

Takeoka, Aya; Jindrich, Devin L; Muñoz-Quiles, Cintia; Zhong, Hui; van den Brand, Rubia; Pham, Daniel L; Ziegler, Matthias D; Ramón-Cueto, Almudena; Roy, Roland R; Edgerton, V Reggie; Phelps, Patricia E

2011-03-16

Reports based primarily on anatomical evidence suggest that olfactory ensheathing glia (OEG) transplantation promotes axon regeneration across a complete spinal cord transection in adult rats. Based on functional, electrophysiological, and anatomical assessments, we found that OEG promoted axon regeneration across a complete spinal cord transection and that this regeneration altered motor responses over time. At 7 months after transection, 70% of OEG-treated rats showed motor-evoked potentials in hindlimb muscles after transcranial electric stimulation. Furthermore, a complete spinal cord retransection performed 8 months after injury demonstrated that this axon regeneration suppressed locomotor performance and decreased the hypersensitive hindlimb withdrawal response to mechanical stimulation. OEG transplantation alone promoted reorganization of lumbosacral locomotor networks and, when combined with long-term training, enhanced some stepping measures. These novel findings demonstrate that OEG promote regeneration of mature axons across a complete transection and reorganization of spinal circuitry, both of which contribute to sensorimotor function.

Axon Regeneration Can Facilitate or Suppress Hindlimb Function after Olfactory Ensheathing Glia Transplantation

PubMed Central

Takeoka, Aya; Jindrich, Devin L.; Muñoz-Quiles, Cintia; Zhong, Hui; van den Brand, Rubia; Pham, Daniel L.; Ziegler, Matthias D.; Ramón-Cueto, Almudena; Roy, Roland R.; Edgerton, V. Reggie

2011-01-01

Reports based primarily on anatomical evidence suggest that olfactory ensheathing glia (OEG) transplantation promotes axon regeneration across a complete spinal cord transection in adult rats. Based on functional, electrophysiological, and anatomical assessments, we found that OEG promoted axon regeneration across a complete spinal cord transection and that this regeneration altered motor responses over time. At 7 months after transection, 70% of OEG-treated rats showed motor-evoked potentials in hindlimb muscles after transcranial electric stimulation. Furthermore, a complete spinal cord retransection performed 8 months after injury demonstrated that this axon regeneration suppressed locomotor performance and decreased the hypersensitive hindlimb withdrawal response to mechanical stimulation. OEG transplantation alone promoted reorganization of lumbosacral locomotor networks and, when combined with long-term training, enhanced some stepping measures. These novel findings demonstrate that OEG promote regeneration of mature axons across a complete transection and reorganization of spinal circuitry, both of which contribute to sensorimotor function. PMID:21411671

[Urethroplasty with transection of urethral orifice and preservation and lengthening of urethral plate: highly applicable to the treatment of hypospadias].

PubMed

Wang, Wen-Min; Qiu, Wei-Feng; Qian, Chong

2010-07-01

To explore the feasibility of urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate in the treatment of hypospadias. Forty-eight patients with hypospadias (18 of the coronal type, 21 the penile type, 8 the penoscrotal type and 1 the perineal type) underwent urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate. The surgical effects were observed by following up the patients for 3-27 months. One-stage surgical success was achieved in 44 of the cases, with satisfactory functional and cosmetic results but no complications. Two cases developed urinary fistula and another 2 urethral stricture, but all cured by the second surgery. Urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate is a simple, safe and effective surgical procedure for the treatment of hypospadias.

The Sidi Ifni transect across the rifted margin of Morocco (Central Atlantic): Vertical movements constrained by low-temperature thermochronology

NASA Astrophysics Data System (ADS)

Charton, Rémi; Bertotti, Giovanni; Arantegui, Angel; Bulot, Luc

2018-05-01

The occurrence of km-scale exhumations during syn- and post-rift stages has been documented along Atlantic continental margins, which are also characterised by basins undergoing substantial subsidence. The relationship between the exhuming and subsiding domains is poorly understood. In this study, we reconstruct the evolution of a 50 km long transect across the Moroccan rifted margin from the western Anti-Atlas to the Atlantic basin offshore the city of Sidi Ifni. Low-temperature thermochronology data from the Sidi Ifni area document a ca. 8 km exhumation between the Permian and the Early/Middle Jurassic. The related erosion fed sediments to the subsiding Mesozoic basin to the NW. Basement rocks along the transect were subsequently buried by 1-2 km between the Late Jurassic and the Early Cretaceous. From late Early/Late Cretaceous onwards, rocks present along the transect were exhumed to their present-day position.

E-4 Central Kentucky to the Carolina Trough

USGS Publications Warehouse

Rankin, Douglas W.; Dillon, William P.; Black, D.F.B.; Boyer, S.E.; Daniels, David L.; Goldsmith, R.; Grow, J.A.; Horton, J. Wright; Hutchinson, Deborah R.; Klitgord, Kim D.; McDowell, R.C.; Milton, D.J.; Owens, J.P.; Phillips, Jeffrey D.; Bayer, K.C.; Butler, John R.; Elliott, D.W.; Milici, Robert C.

1991-01-01

E-4 is one of eight Geodynamics transects that cross the Atlantic margin of North America between Georgia and Newfoundland. Five of the transects are in the United States and three are in Canada. Transect E-4, which is 110 km wide and more than 1,100 km long, extends from the stable North American craton just west of the Grenville front near Lexington, Kentucky southeastward across Cape Fear, North Carolina, on the Atlantic coast to oceanic crust east of the Blake Spur magnetic anomaly. Like all of the other U.S. Atlantic coast transects, it crosses Cambrian and Jurassic continental margins of North America as well as the Appalachian orogen. The display, based upon published information, portrays the geology, tectonic style and geophysical expression of this segment of the eastern North American continental margin and interprets its Phanerozoic history. The Decade of North American Geology 1983 geologic time scale (Palmer, 1983) is used throughout the display and text.

Biomechanical implications of lumbar spinal ligament transection.

PubMed

Von Forell, Gregory A; Bowden, Anton E

2014-11-01

Many lumbar spine surgeries either intentionally or inadvertently damage or transect spinal ligaments. The purpose of this work was to quantify the previously unknown biomechanical consequences of isolated spinal ligament transection on the remaining spinal ligaments (stress transfer), vertebrae (bone remodelling stimulus) and intervertebral discs (disc pressure) of the lumbar spine. A finite element model of the full lumbar spine was developed and validated against experimental data and tested in the primary modes of spinal motion in the intact condition. Once a ligament was removed, stress increased in the remaining spinal ligaments and changes occurred in vertebral strain energy, but disc pressure remained similar. All major biomechanical changes occurred at the same spinal level as the transected ligament, with minor changes at adjacent levels. This work demonstrates that iatrogenic damage to spinal ligaments disturbs the load sharing within the spinal ligament network and may induce significant clinically relevant changes in the spinal motion segment.

Mercury in sediments from shelf and continental slope at Campos Basin near Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

Araujo, Beatriz; Hintelmann, Holger; Dimock, Brian; Gomes de Almeida, Marcelo; Falcão, Ana Paula; de Rezende, Carlos Eduardo

2016-04-01

Mercury (Hg) is a global pollutant due to its ability to undergo long-range transport from source regions to remote parts of the world, and its ubiquitous presence in aquatic ecosystems. The Hg isotope ratios could be an effective tool for tracing the sources and process of Hg in the environment. This study aimed to establish the distribution of mercury in surface sediments of three transects (25- 3000m water depth) in continental shelf and slope in Campos Basin-RJ-Brazil, using the Hg isotopes to understand the geochemical processes relating to Hg cycling that occur in a subtropical coastal environment. The study area was divided into three transects: A (located to the south and close to a upwelling area), D (located opposite the mouth of the Paraiba do Sul River) and I (located north near the top of Vitória-ES). Sampling isobaths were 25, 50, 75, 100, 150, 400, 700, 1000, 1300, 1900, 2500 and 3000m. The Total Hg, MMHg and Hg stable isotopes were determined based on EPA Method 1631, EPA method 1630 and Foucher and Hintelmann (2006), respectively. The silt/clay ranged from 0.05 to 95%, and the organic carbon (OC) from 0.07 to 1.43 % for all transects. THg and MMHg concentrations in the shelf were 11.9 ± 7.2 (1.7- 22.2) ng.g-1 and 0.15 ± 0.12 (0.02 - 0.40) ng.g-1; in the slope 30.3 ± 9.2 (11.6 - 51.6) ng.g-1 and 0.13 ± 0.06 (0.03 -0.29) ng.g-1 , respectively. The δ202Hg and Δ199Hg varied from -0.32 to -1.85 ‰ (-0.79 ± 0.44‰) and -0.41 to 0.09 ‰ (-0.03 ± 0.12 ‰) for all transects, respectively. The delta values between both regions are significantly different, the shelf region showed δ202Hg from -0.59 to -2.19 ‰ (mean: -1.52 ±0.65) and Δ199Hg from - 0.53 to 0.08 ‰ (mean: -0.27 ±0.55) and the slope region were observed δ202Hg values from -0.32 to -1.82 ‰ (mean: -0.73 ±0.39 ‰ n=18) and gΔ199Hg from -0.23 to 0.09‰ (mean: -0.02 ±0.08‰ n=5). The slope appears to be enriched with heavier isotopes compared to the shelf, however, in the upper slope we can observe some points with ligther isotopes. the Some in the transect D, located closer to the cost (25 and 50 m of depth), showed the most negative isotope signature. This transect receives direct influence from the Paraíba do Sul river, so the Hg composition may be explained the riverine contribution characterized by Hg of different origin. Moreover, the negative δ202Hg values mainly observed in some stations in the shelf region, can be caused by process such as degassing of dissolved Hg0, volatilization, microbial reduction and photoreduction, which tend to deplete the lighter Hg isotopes in the product Hg0. Likewise, process such as physical settling of Hg adsorbed to particles and atmospheric deposition of Hg could also be a possible cause of the lower δ202Hg values. In addition, the positive Δ199Hg values could be caused due atmospheric Hg deposition, which represents a significant source in the biogeochemical cycle of Hg in oceans.

A new technique for hepatic parenchymal transection using an articulating bipolar 5 cm radiofrequency device: results from the first 100 procedures.

PubMed

Takahashi, Hideo; Akyuz, Muhammet; Aksoy, Erol; Aucejo, Federico; Quintini, Cristiano; Miller, Charles; Fung, John; Berber, Eren

2018-04-13

Parenchymal transection(PT) still remains a challenge in liver resection. The outcomes of the first experience of a novel vessel-sealer for hepatic transection were assessed. A bipolar articulating vessel-sealer (Caiman ® , Aesculap Inc., Center Valley, PA) was used in 100 liver resections through both open (OLR) and laparoscopic (LLR) approaches. All data were prospectively collected into an IRB-approved department database, and clinical, surgical and perioperative parameters were analyzed. Fifty patients underwent OLR and 50 patients underwent LLR. Eighty hepatectomies were performed for malignancy. Median number of tumors was 1, with the largest focus measuring an average of 5.1 cm. Forty-nine of the procedures were major liver resections. Parenchymal transection time was 29.9 ± 3.1 min in OLR and 29.9 ± 3.6 min in LLR. Median estimated blood loss was 300 cc (Inter-quartile range (IQR) 100-575 cc). Median hospital stay was 6 days for open and 3 days for laparoscopic procedures. Ninety-day complication rate was 8% without any mortality. Bile leak rate was 4%. Staplers were used for parenchymal transection in 16 cases. This study introduces a new multifunctional device into the armamentarium of the liver surgeon. In our experience, this device facilitated the parenchymal transection by adding speed and consolidating the amount of instrumentation used in liver resection without increasing complications. Copyright © 2018 International Hepato-Pancreato-Biliary Association Inc. Published by Elsevier Ltd. All rights reserved.

A geostatistical approach for quantification of contaminant mass discharge uncertainty using multilevel sampler measurements

NASA Astrophysics Data System (ADS)

Li, K. Betty; Goovaerts, Pierre; Abriola, Linda M.

2007-06-01

Contaminant mass discharge across a control plane downstream of a dense nonaqueous phase liquid (DNAPL) source zone has great potential to serve as a metric for the assessment of the effectiveness of source zone treatment technologies and for the development of risk-based source-plume remediation strategies. However, too often the uncertainty of mass discharge estimated in the field is not accounted for in the analysis. In this paper, a geostatistical approach is proposed to estimate mass discharge and to quantify its associated uncertainty using multilevel transect measurements of contaminant concentration (C) and hydraulic conductivity (K). The approach adapts the p-field simulation algorithm to propagate and upscale the uncertainty of mass discharge from the local uncertainty models of C and K. Application of this methodology to numerically simulated transects shows that, with a regular sampling pattern, geostatistics can provide an accurate model of uncertainty for the transects that are associated with low levels of source mass removal (i.e., transects that have a large percentage of contaminated area). For high levels of mass removal (i.e., transects with a few hot spots and large areas of near-zero concentration), a total sampling area equivalent to 6˜7% of the transect is required to achieve accurate uncertainty modeling. A comparison of the results for different measurement supports indicates that samples taken with longer screen lengths may lead to less accurate models of mass discharge uncertainty. The quantification of mass discharge uncertainty, in the form of a probability distribution, will facilitate risk assessment associated with various remediation strategies.

Spontaneous recovery of locomotion induced by remaining fibers after spinal cord transection in adult rats.

PubMed

You, Si-Wei; Chen, Bing-Yao; Liu, Hui-Ling; Lang, Bing; Xia, Jie-Lai; Jiao, Xi-Ying; Ju, Gong

2003-01-01

A major issue in analysis of experimental results after spinal cord injury is spontaneous functional recovery induced by remaining nerve fibers. The authors investigated the relationship between the degree of locomotor recovery and the percentage and location of the fibers that spared spinal cord transection. The spinal cords of 12 adult rats were transected at T9 with a razor blade, which often resulted in sparing of nerve fibers in the ventral spinal cord. The incompletely-transected animals were used to study the degree of spontaneous recovery of hindlimb locomotion, evaluated with the BBB rating scale, in correlation to the extent and location of the remaining fibers. Incomplete transection was found in the ventral spinal cord in 42% of the animals. The degree of locomotor recovery was highly correlated with the percentage of the remaining fibers in the ventral and ventrolateral funiculi. In one of the rats, 4.82% of remaining fibers in unilateral ventrolateral funiculus were able to sustain a certain recovery of locomotion. Less than 5% of remaining ventrolateral white matter is sufficient for an unequivocal motor recovery after incomplete spinal cord injury. Therefore, for studies with spinal cord transection, the completeness of sectioning should be carefully checked before any conclusion can be reached. The fact that the degree of locomotor recovery is correlated with the percentage of remaining fibers in the ventrolateral spinal cord, exclusive of most of the descending motor tracts, may imply an essential role of propriospinal connections in the initiation of spontaneous locomotor recovery.

Effects of the dimeric PSD-95 inhibitor UCCB01-144 on functional recovery after fimbria-fornix transection in rats.

PubMed

Sommer, Jens Bak; Bach, Anders; Malá, Hana; Strømgaard, Kristian; Mogensen, Jesper; Pickering, Darryl S

2017-10-01

Pharmacological inhibition of PSD-95 is a promising therapeutic strategy in the treatment of stroke, and positive effects of monomeric and dimeric PSD-95 inhibitors have been reported in numerous studies. However, whether therapeutic effects will generalize to other types of acute brain injury such as traumatic brain injury (TBI), which has pathophysiological mechanisms in common with stroke, is currently uncertain. We have previously found a lack of neuroprotective effects of dimeric PSD-95 inhibitors in the controlled cortical impact model of TBI in rats. However, as no single animal model is currently able to mimic the complex and heterogeneous pathophysiology of TBI, it is necessary to assess treatment effects across a range of models. In this preliminary study we investigated the neuroprotective abilities of the dimeric PSD-95 inhibitor UCCB01-144 after fimbria-fornix (FF) transection in rats. UCCB01-144 or saline was injected into the lateral tail vein of rats immediately after sham surgery or FF-transection, and effects on spatial delayed alternation in a T-maze were assessed over a 28-day period. Task acquisition was significantly impaired in FF-transected animals, but there were no significant effects of UCCB01-144 on spatial delayed alternation after FF-transection or sham surgery, although decelerated learning curves were seen after treatment with UCCB01-144 in FF-transected animals. The results of the present study are consistent with previous research showing a lack of neuroprotective effects of PSD-95 inhibition in experimental models of TBI. Copyright © 2017 Elsevier Inc. All rights reserved.

Fungiform taste bud degeneration in C57BL/6J mice following chorda-lingual nerve transection.

PubMed

Guagliardo, Nick A; Hill, David L

2007-09-10

Taste buds are dependent on innervation for normal morphology and function. Fungiform taste bud degeneration after chorda tympani nerve injury has been well documented in rats, hamsters, and gerbils. The current study examines fungiform taste bud distribution and structure in adult C57BL/6J mice from both intact taste systems and after unilateral chorda-lingual nerve transection. Fungiform taste buds were visualized and measured with the aid of cytokeratin 8. In control mice, taste buds were smaller and more abundant on the anterior tip (<1 mm) of the tongue. By 5 days after nerve transection taste buds were smaller and fewer on the side of the tongue ipsilateral to the transection and continued to decrease in both size and number until 15 days posttransection. Degenerating fungiform taste buds were smaller due to a loss of taste bud cells rather than changes in taste bud morphology. While almost all taste buds disappeared in more posterior fungiform papillae by 15 days posttransection, the anterior tip of the tongue retained nearly half of its taste buds compared to intact mice. Surviving taste buds could not be explained by an apparent innervation from the remaining intact nerves. Contralateral effects of nerve transection were also observed; taste buds were larger due to an increase in the number of taste bud cells. These data are the first to characterize adult mouse fungiform taste buds and subsequent degeneration after unilateral nerve transection. They provide the basis for more mechanistic studies in which genetically engineered mice can be used. (c) 2007 Wiley-Liss, Inc.

Passive immunization of fetal rats with antiserum to luteinizing hormone-releasing hormone (LHRH) or transection of the central roots of the nervus terminalis does not affect rat pups' preference for home nest.

PubMed

Schwanzel-Fukuda, M; Pfaff, D W

1987-01-01

Luteinizing hormone-releasing hormone (LHRH) is found immunocytochemically in cell bodies and fibers of the nervus terminalis, a cranial nerve which courses from the nasal septum through the cribriform plate of the ethmoid bone (medial to the olfactory and vomeronasal nerves) and enters the forebrain, caudal to the olfactory bulbs. Immunoreactive LHRH is first detected in the nervus terminalis of the fetal rat at 15 days of gestation, preceding its detection by immunocytochemistry in any other area of the brain, including the median eminence, and preceding detection of immunoreactive luteinizing hormone (LH) in the anterior pituitary. During development of the rat fetus, the nervus terminalis is the principal source of LHRH in the nervous system from days 15 through 19 of a 21 day gestation period. We tested the notion that the LHRH system of the nervus terminalis is important for olfactory performance by examining the effects of administration of antisera to LHRH during fetal development (versus saline controls), or medial olfactory peduncle transections, in the neonatal rat, which would sever the central projections of the nervus terminalis (versus lateral peduncle transection, complete transection of the olfactory peduncles and the central nervus terminalis or controls) on preferences of rat pups for home nest. The hypothesis that LHRH is important for this chemosensory response was not confirmed. Neither antisera to LHRH nor medical olfactory peduncle transection disrupted preference for home shavings. Only complete olfactory peduncle transection had a significant effect compared to unoperated and sham-operated controls.

Multiple hippocampal transections for intractable hippocampal epilepsy: Seizure outcome.

PubMed

Koubeissi, Mohamad Z; Kahriman, Emine; Fastenau, Philip; Bailey, Christopher; Syed, Tanvir; Amina, Shahram; Miller, Jonathan; Munyon, Charles; Tanner, Adriana; Karanec, Kristina; Tuxhorn, Ingrid; Lüders, Hans

2016-05-01

The purpose of this study was to evaluate the seizure outcomes after transverse multiple hippocampal transections (MHTs) in 13 patients with intractable TLE. Thirteen patients with normal memory scores, including 8 with nonlesional hippocampi on MRI, had temporal lobe epilepsy (TLE) necessitating depth electrode implantation. After confirming hippocampal seizure onset, they underwent MHT. Intraoperative monitoring was done with 5-6 hippocampal electrodes spaced at approximately 1-cm intervals and spike counting for 5-8min before each cut. The number of transections ranged between 4 and 7. Neuropsychological assessment was completed preoperatively and postoperatively for all patients and will be reported separately. Duration of epilepsy ranged between 5 and 55years. There were no complications. Intraoperatively, MHT resulted in marked spike reduction (p=0.003, paired t-test). Ten patients (77%) are seizure-free (average follow-up was 33months, range 20-65months) without medication changes. One of the 3 patients with persistent seizures had an MRI revealing incomplete transections, another had an additional neocortical seizure focus (as suggested by pure aphasic seizures), and the third had only 2 seizures in 4years, one of which occurred during antiseizure medication withdrawal. Verbal and visual memory outcomes will be reported separately. Right and left hippocampal volumes were not different preoperatively (n=12, p=0.64, Wilcoxon signed-rank test), but the transected hippocampal volume decreased postoperatively (p=0.0173). Multiple hippocampal transections provide an effective intervention and a safe alternative to temporal lobectomy in patients with hippocampal epilepsy. Copyright © 2016 Elsevier Inc. All rights reserved.

Effect of partial and complete posterior cruciate ligament transection on medial meniscus: A biomechanical evaluation in a cadaveric model.

PubMed

Gao, Shu-Guang; Zhang, Can; Zhao, Rui-Bo; Liao, Zhan; Li, Yu-Sheng; Yu, Fang; Zeng, Chao; Luo, Wei; Li, Kang-Hua; Lei, Guang-Hua

2013-09-01

The relationship between medial meniscus tear and posterior cruciate ligament (PCL) injury has not been exactly explained. We studied to investigate the biomechanical effect of partial and complete PCL transection on different parts of medial meniscus at different flexion angles under static loading conditions. TWELVE FRESH HUMAN CADAVERIC KNEE SPECIMENS WERE DIVIDED INTO FOUR GROUPS: PCL intact (PCL-I), anterolateral bundle transection (ALB-T), posteromedial bundle transection (PMB-T) and PCL complete transection (PCL-T) group. Strain on the anterior horn, body part and posterior horn of medial meniscus were measured under different axial compressive tibial loads (200-800 N) at 0°, 30°, 60° and 90° knee flexion in each groups respectively. Compared with the PCL-I group, the PCL-T group had a higher strain on whole medial meniscus at 30°, 60° and 90° flexion in all loading conditions and at 0° flexion with 400, 600 and 800 N loads. In ALB-T group, strain on whole meniscus increased at 30°, 60° and 90° flexion under all loading conditions and at 0° flexion with 800 N only. PMB-T exihibited higher strain at 0° flexion with 400 N, 600 N and 800 N, while at 30° and 60° flexion with 800 N and at 90° flexion under all loading conditions. Partial PCL transection triggers strain concentration on medial meniscus and the effect is more pronounced with higher loading conditions at higher flexion angles.

Influence of the proximity and amount of human development and roads on the occurrence of the red imported fire ant in the lower Florida Keys

USGS Publications Warehouse

Forys, E.A.; Allen, Craig R.; Wojcik, D.P.

2002-01-01

We examined the influence of both the proximity and extent of human developments and paved roads on the presence of the predatory, non-indigenous, red imported fire ant (Solenopsis invicta). This species was inadvertently introduced into the United States at the port of Mobile, Alabama, around 1930 and rapidly spread to many southeastern states, including Florida. More recently, S. invicta colonized the Florida Keys, an area with a high proportion of rare and endemic vertebrate and invertebrate species. We placed bait transects in transitional salt-marsh, pineland, and hardwood hammocks on 13 of the lower Florida Keys and compared habitat type, the shortest distance of the bait transect to a development or road, and area of development and roads 50, 70, 100, and 150 m around each bait transect for areas with and without red imported fire ants. Red imported fire ants were detected on 21 of the 80 transects and were equally abundant in all habitat types. While all of the development and road variables differed significantly between bait transects with and without red imported fire ants, transects that were closest to roads and that had the largest amount of development within a 150 m radii had the highest probability of presence of red imported fire ants. Recovery efforts for endangered species in areas invaded by red imported fire ants should include analyses of the cumulative impacts of roads and developments in areas near protected lands. ?? 2002 Elsevier Science Ltd. All rights reserved.

Differential Adaptations of the Musculoskeletal System after Spinal Cord Contusion and Transection in Rats.

PubMed

Lin, Ching-Yi; Androjna, Charlie; Rozic, Richard; Nguyen, Bichtram; Parsons, Brett; Midura, Ronald J; Lee, Yu-Shang

2018-04-05

Spinal cord injury (SCI) causes impaired neuronal function with associated deficits in the musculoskeletal system, which can lead to permanent disability. Here, the impact of SCI on in vivo musculoskeletal adaptation was determined by studying deficits in locomotor function and analyzing changes that occur in the muscle and bone compartments within the rat hindlimb after contusion or transection SCI. Analyses of locomotor patterns, as assessed via the Basso, Beattie, and Bresnahan (BBB) rating scale, revealed that transection animals showed significant deficits, while the contusion group had moderate deficits, compared with naïve groups. Muscle myofiber cross-sectional areas (CSA) of both the soleus and tibialis anterior muscles were significantly decreased three months after contusion SCI. Such decreases in CSA were even more dramatic in the transection SCI group, suggesting a dependence on muscle activity, which is further validated by the correlation analyses between BBB score and myofiber CSA. Bone compartment analyses, however, revealed that transection animals showed the most significant deficits, while contusion animals showed no significant differences in the trabecular bone content within the proximal tibia compartment. In general, values of bone volume per total bone volume (BV/TV) were similar across the SCI groups. Significant decreases were observed, however, in the transection animals for bone mineral content, bone mineral density, and three-dimensional trabecular structure parameters (trabecular number, thickness, and spacing) compared with the naïve and contusion groups. Together, these findings suggest an altered musculoskeletal system can be correlated directly to motor dysfunctions seen after SCI.

Are Adult Crambid Snout Moths (Crambinae) and Larval Stages of Lepidoptera Suitable Tools for an Environmental Monitoring of Transgenic Crops? — Implications of a Field Test

PubMed Central

Lang, Andreas; Dolek, Matthias; Theißen, Bernhard; Zapp, Andreas

2011-01-01

Butterflies and moths (Lepidoptera) have been suggested for the environmental monitoring of genetically modified (GM) crops due to their suitability as ecological indicators, and because of the possible adverse impact of the cultivation of current transgenic crops. The German Association of Engineers (VDI) has developed guidelines for the standardized monitoring of Lepidoptera describing the use of light traps for adult moths, transect counts for adult butterflies, and visual search for larvae. The guidelines suggest recording adults of Crambid Snout Moths during transect counts in addition to butterflies, and present detailed protocols for the visual search of larvae. In a field survey in three regions of Germany, we tested the practicability and effort-benefit ratio of the latter two VDI approaches. Crambid Snout Moths turned out to be suitable and practical indicators, which can easily be recorded during transect counts. They were present in 57% of the studied field margins, contributing a substantial part to the overall Lepidoptera count, thus providing valuable additional information to the monitoring results. Visual search of larvae generated results in an adequate effort-benefit ratio when searching for lepidopteran larvae of common species feeding on nettles. Visual search for larvae living on host plants other than nettles was time-consuming and yielded much lower numbers of recorded larvae. Beating samples of bushes and trees yielded a higher number of species and individuals. This method is especially appropriate when hedgerows are sampled, and was judged to perform intermediate concerning the relationship between invested sampling effort and obtained results for lepidopteran larvae. In conclusion, transect counts of adult Crambid Moths and recording of lepidopteran larvae feeding on nettles are feasible additional modules for an environmental monitoring of GM crops. Monitoring larvae living on host plants other than nettles and beating samples of bushes and trees can be used as a supplementary tool if necessary or desired. PMID:26467735

The Effect of Oyster Reef Morphology on Particulate Transfer in a North Carolina Tidal Creek

NASA Astrophysics Data System (ADS)

Lemon, M. G.; Posey, M.; Mallin, M.; Alphin, T.

2014-12-01

The eastern oyster (Crassostrea virginica) is a vital ecosystem engineer species, providing a number of ecosystem services that structure and maintain estuarine environments through the construction of large, hard-bottom reef complexes. Through suspension feeding, oysters clear the water column of particulates, leading to decreased suspended material and enhanced benthic pelagic coupling. Past field studies have indicated the potential importance of the physical reef structure in regulating the transfer of particulate material in the seston. In order to directly assess the existence of the physical reef effect, multiple field experiments were performed in a small tidal creek estuary along the south eastern coast of North Carolina. Comparison of clearance rates derived from two different in situ methods, one accounting for the physical structure of the oyster reef in addition to oyster filtration and one looking at oyster filtration alone, indicate that the reef structure may increase the amount of particulate removal performed by the reef by more than 4 times the removal performed by oyster filtration alone. A defaunation experiment was performed by eliminating the live component of the oyster reef and comparing particulate transfer of this defaunated transect to that of an adjacent faunated transect. The defaunated transect had reduced but not significantly lower material removal when compared to the faunated transect prior to defaunation. Results from short and long term sediment collection and flow velocity measurements indicate that the physical effect of oyster reefs is strong over short temporal scales (days) but is much smaller when evaluated over longer time periods (months). Generally, large silt and small sand sized material is permanently removed from the seston due to the interaction of oyster reef structure and tidal flows, however the transfer of small and medium sized silt grains is only slowed down by the presence of large reef complexes. This effect has important ecological implications for downstream water quality and must be accounted for when modeling water quality improvements performed by oysters.

Branchfall as a Demographic Filter for Epiphyte Communities: Lessons from Forest Floor-Based Sampling

PubMed Central

Sarmento Cabral, Juliano; Petter, Gunnar; Mendieta-Leiva, Glenda; Wagner, Katrin; Zotz, Gerhard; Kreft, Holger

2015-01-01

Local variation in the abundance and richness of vascular epiphytes is often attributed to environmental characteristics such as substrate and microclimate. Less is known, however, about the impacts of tree and branch turnover on epiphyte communities. To address this issue, we surveyed branches and epiphytes found on the forest floor in 96 transects in two forests (Atlantic rainforest in Brazil and Caribbean rainforest in Panama). In the Brazilian forest, we additionally distinguished between edge and core study sites. We quantified branch abundance, epiphyte abundance, richness and proportion of adults to investigate the trends of these variables over branch diameter. Branches <2 cm in diameter comprised >90% of all branches on the forest floor. Abundance and richness of fallen epiphytes per transect were highest in the Brazilian core transects and lowest in the Panamanian transects. The majority of epiphytes on the floor (c. 65%) were found attached to branches. At all three study sites, branch abundance and branch diameter were negatively correlated, whereas epiphyte abundance and richness per branch, as well as the proportion of adults were positively correlated with branch diameter. The relationship between branch diameter and absolute epiphyte abundance or richness differed between study sites, which might be explained by differences in forest structure and dynamics. In the Panamanian forest, epiphytes had been previously inventoried, allowing an evaluation of our surveying method by comparing canopy and forest floor samplings. Individuals found on the forest floor corresponded to 13% of all individuals on branches <10 cm in diameter (including crowns), with abundance, richness and composition trends on forest floor reflecting canopy trends. We argue that forest floor surveys provide useful floristic and, most notably, demographic information particularly on epiphytes occurring on the thinnest branches, which are least accessible. Here, branchfall acts as an important demographic filter structuring epiphyte communities. PMID:26083417

Primary nerve grafting: A study of revascularization.

PubMed

Chalfoun, Charbel; Scholz, Thomas; Cole, Matthew D; Steward, Earl; Vanderkam, Victoria; Evans, Gregory R D

2003-01-01

It was the purpose of this study to evaluate the revascularization of primary nerve repair and grafts using orthogonal polarization spectral (OPS) (Cytometrix, Inc.) imaging, a novel method for real-time evaluation of microcirculatory blood flow. Twenty male Sprague Dawley rats (250 g) were anesthetized with vaporized halothane and surgically prepared for common peroneal nerve resection. Group I animals (n = 10) underwent primary neurorraphy following transection, utilizing a microsurgical technique with 10-0 nylon suture. Group II (n = 10) animals had a 7-mm segment of nerve excised, reversed, and subsequently replaced as a nerve graft under similar techniques. All animals were evaluated using the OPS imaging system on three portions (proximal, transection site/graft, and distal) of the nerve following repair or grafting. Reevaluation of 5 animals randomly selected from each group using the OPS imaging system was again performed on days 14 and 28 following microsurgical repair/grafting. Values were determined by percent change in vascularity of the common peroneal nerve at 0 hr following surgery. Real-time evaluation of blood flow was utilized as an additional objective criterion. Percent vascularity in group I and II animals increased from baseline in all segments at day 14. By day 28, vascularity in nerves of group I rats decreased in all segments to values below baseline, with the exception of the transection site, which remained at a higher value than obtained directly after surgical repair. In group II animals, vascularity remained above baseline in all segments except the distal segment, which returned to vascularity levels similar to those at 0 hr. Further, occlusion of the vessels demonstrated in the graft and distal segments following initial transection appeared to be corrected. This study suggests that revascularization may occur via bidirectional inosculation with favored proximal vascular growth advancement. The use of real-time imaging offers a unique evaluation of tissues through emerging technologies. Copyright 2003 Wiley-Liss, Inc.

Optimization of Surveys with Internet Operated Deep-sea Crawlers, as an Integrated Tool for Ocean Cabled Observatories: Monitoring the Benthic Community of a Methane Hydrates Site in Barkley Canyon (BC, Canada)

NASA Astrophysics Data System (ADS)

Chatzievangelou, D.; Suarez, A.; Aguzzi, J.; Bigham, K.; Thomsen, L.

2017-12-01

Deep-sea research is entering an era of coordinated, multidisciplinary monitoring of benthic ecosystems, from local and regional to global scale. Technological advances, such as the development of ocean cabled observatories and mobile vehicles operating within them, raise the issue of "smart" study designs. The objective is optimizing the balance among reduced effort (i.e. sampling, data transfer and storage, a posteriori treatment), accurate representation of the monitored ecosystems and a minimal ecological footprint. For this study, 18 linear imaging transects ( 25 m each, 1 Hz frequency) were performed by the Internet Operated Deep-sea Crawler "Wally" at the Barkley Canyon hydrates site (870 m depth) within the Ocean Networks Canada NEPTUNE observatory, generating a total of 19920 images. In order to evaluate sampling effort, species accumulation curves were calculated against the number of transects, and the permanence time of mobile individuals in the crawler's field of view was used to assess the number of individuals captured for different potential imaging frequencies. The effect of the crawler caterpillars on benthic organisms was evaluated by comparing the images of disturbed (i.e previous tracks) vs. undisturbed seabed. The analyses showed that maximum species richness (i.e. 18 species) was achieved after 10 transects, while 0.33 Hz and 0.5 Hz imaging frequencies captured more than 95% of the individuals counted with the original 1 Hz method. Preliminary results indicate no differences in the numbers of benthic animals between the disturbed and the undisturbed seabed parts. These findings allow the design of future experiments under similar conditions with minimized costs and effort without compromising data quality. Finally, the low invasiveness of the crawler as a monitoring platform, as long as certain protocols are followed, is highlighted. Ongoing analyses of the same transects assess the varying macro- and megafauna, in relation to the distance from a nearby, small ( 2-3 m high) hydrate mound.

Coral reefs in Saudi Arabia: 3.5 years after the Gulf War oil spill

NASA Astrophysics Data System (ADS)

Vogt, I. P.

1995-11-01

As a consequence of the 1991 Gulf War, 6-8 million barrels of oil were released into the marine environment and a total of 1.12 billion barrels were burned in the Kuwaiti oil fields. In order to detect delayed effects of the Gulf War pollution, six permanent transect lines were placed on Saudi Arabian offshore and inshore reefs. A comparison of three sets of video recordings taken between 1992 and 1994 indicated a significant increase in live coral cover. Therefore, it has been concluded that corals in Saudi Arabia survived the largest oil spill on record remarkably unscathed, with no visible signs of immediate or late effects up to 3.5 years after the Gulf War.

Limits to the capacity of transplants of olfactory glia to promote axonal regrowth in the CNS.

PubMed

Gudiño-Cabrera, G; Pastor, A M; de la Cruz, R R; Delgado-García, J M; Nieto-Sampedro, M

2000-02-28

Olfactory bulb ensheathing cell (OBEC) transplants promoted axonal regeneration in the spinal cord dorsal root entry zone and in the corticospinal tract. However, OBECs failed to promote abducens internuclear neuron axon regeneration when transplanted at the site of nerve fibre transection. In experiments performed in both cats and rats, OBECs survived for up to 2 months, lining themselves up along the portion of the regrowing axons proximal to the interneuron cell body. However, OBECs migrated preferentially towards abducens somata, in the direction opposite to the oculomotor nucleus target. OBECs seem to promote nerve fibre regeneration only where preferred direction of glial migration coincides with the direction of axonal growth towards its target.

NV PFA Regional Data

DOE Data Explorer

James Faulds

2015-10-28

This project focused on defining geothermal play fairways and development of a detailed geothermal potential map of a large transect across the Great Basin region (96,000 km2), with the primary objective of facilitating discovery of commercial-grade, blind geothermal fields (i.e. systems with no surface hot springs or fumaroles) and thereby accelerating geothermal development in this promising region. Data included in this submission consists of: structural settings (target areas, recency of faulting, slip and dilation potential, slip rates, quality), regional-scale strain rates, earthquake density and magnitude, gravity data, temperature at 3 km depth, permeability models, favorability models, degree of exploration and exploration opportunities, data from springs and wells, transmission lines and wilderness areas, and published maps and theses for the Nevada Play Fairway area.

An improved stereologic method for three-dimensional estimation of particle size distribution from observations in two dimensions and its application.

PubMed

Xu, Yi-Hua; Pitot, Henry C

2003-09-01

Single enzyme-altered hepatocytes; altered hepatic foci (AHF); and nodular lesions have been implicated, respectively in the processes of initiation, promotion, and progression in rodent hepatocarcinogenesis. Qualitative and quantitative analyses of such lesions have been utilized both to identify and to determine the potency of initiating, promoting, and progressor agents in rodent liver. Of a number of possible parameters determined in the study of such lesions, estimation of the number of foci or nodules in the liver is very important. The method of Saltykov has been used for estimating the number of AHF in rat liver. However, in practice, the Saltykov calculation has at least two weak points: (a) the size class range is limited to 12, which in many instances is too narrow to cover the range of AHF data obtained; and (b) under some conditions, the Saltykov equation generates negative values in several size classes, an obvious impossibility in the real world. In order to overcome these limitations in the Saltykov calculations, a study of the particle size distribution in a wide-range, polydispersed sphere system was performed. A stereologic method, termed the 25F Association method, was developed from this study. This method offers 25 association factors that are derived from the frequency of different-sized transections obtained from transecting a spherical particle, thus expanding the size class range to be analyzed up to 25, which is sufficiently wide to encompass all rat AHF found in most cases. This method exhibits greater flexibility, which allows adjustments to be made within the calculation process when NA((k,k)), the net number of transections from the same size spheres, was found to be a negative value, which is not possible in real situations. The reliability of the 25F Association method was tested thoroughly by computer simulation in both monodispersed and polydispersed sphere systems. The test results were compared with the original Saltykov method. We found that the 25F Association method yielded a better estimate of the total number of spheres in the three-dimensional tissue sample as well as the detailed size distribution information. Although the 25F Association method was derived from the study of a polydispersed sphere system, it can be used for continuous size distribution sphere systems. Application of this method to the estimation of parameters of preneoplastic foci in rodent liver is presented as an example of its utility. An application software program, 3D_estimation.exe, which uses the 25F Association method to estimate the number of AHF in rodent liver, has been developed and is now available at the website of this laboratory.

Digital radiography and historical contextualisation of the 19th century modified human skeletal remains from the Worcester Royal Infirmary, England.

PubMed

Western, A G; Bekvalac, J

2015-09-01

Recent excavations at the Worcester Royal Infirmary revealed a large assemblage of modified skeletal remains dating to the late 19th century. The assemblage included a sample of 134 long bones, 76 of which were transected and 58 of which displayed evidence of gross pathology without transection. Transection may have been undertaken for the purposes of amputation, anatomical or morbid dissection, for surgical training or specimen preparation. In order to elucidate the motives for such modification, Direct Digital Radiography (DDR) was undertaken on the proximal and distal elements present to confirm the true prevalence of disease. The radiographic evidence revealed that some transected elements exhibited previously unobserved pathological changes. The ratios of proximal to distal elements varied between samples of pathological and non-pathological transected elements, suggesting different motives for modification. There was also a significant difference between the composition of the skeletal sample and that expected from historical records of amputation. Aggressive or acute/subacute as well as chronic stages of disease were observed, some lesions possibly relating to ascending infection following gangrenous limb ischaemia or haematogenous spread. Other rare conditions were detected using DDR, proving it to be a critical tool in the assessment of skeletal disease in the past. Copyright © 2015 Elsevier Inc. All rights reserved.

The design of sampling transects for characterizing water quality in estuaries

USGS Publications Warehouse

Jassby, A.D.; Cole, B.E.; Cloern, J.E.

1997-01-01

The high spatial variability of estuaries poses a challenge for characterizing estuarine water quality. This problem was examined by conducting monthly high-resolution transects for several water quality variables (chlorophyll a, suspended particulate matter and salinity) in San Francisco Bay (California, U.S.A.). Using these data, six different ways of choosing station locations along a transect, in order to estimate mean conditions, were compared. In addition, 11 approaches to estimating the variance of the transect mean when stations are equally spaced were compared, and the relationship between variance of the estimated transect mean and number of stations was determined. The results provide guidelines for sampling along the axis of an estuary: (1) Choose as many equally-spaced stations as practical; (2) estimate the variance of the mean y?? by var (y??)=(1/10n2)??(j=2)/(n) (y(j)-y(j-1)2, where y1,...,y(n) are the measurements at the n stations; and (3) attain the desired precision by adjusting the number of stations according to var(y??)???1/n2. The inverse power of 2 in the last step is a consequence of the underlying spatial correlation structure in San Francisco Bay; more studies of spatial structure at other estuaries are needed to determine the generality of this relationship.

Persulfate injection into a gasoline source zone

NASA Astrophysics Data System (ADS)

Sra, Kanwartej S.; Thomson, Neil R.; Barker, Jim F.

2013-07-01

One pore volume of unactivated sodium persulfate was delivered into an emplaced gasoline residual source zone at CFB Borden. Concentrations of inorganic species (S2O82 -, SO42 -, Na+, dissolved inorganic carbon (DIC)) and selected gasoline compounds (benzene, toluene, ethylbenzene, xylenes, trimethylbenzenes and naphthalene) were monitored across a transect equipped with 90 multilevel sampling points for > 10 months post-injection. Mass loading (M˙) of compounds constructed from the transect data was used for assessment purposes. Breakthrough of inorganic species was observed when the injection slug crossed the monitoring transect. An increase in M indicated persulfate consumption during oxidation of gasoline compounds or degradation due to the interaction with aquifer materials. M increased by > 100% suggesting some mineralization of gasoline compounds during treatment. Mass loading for all the monitored gasoline compounds reduced by 46 to 86% as the inorganic slug crossed the monitoring transect. The cumulative mass discharge across the monitoring transect was 19 to 58% lower than that expected without persulfate injection. After the inorganic injection slug was flushed from the source zone a partial rebound (40 to 80% of baseline levels) of mass discharge of the monitored gasoline compounds was observed. The ensemble of data collected provides insight into the fate and transport of the injected persulfate solution, and the accompanying treatment of a gasoline the source zone.

Latitudinal transects in the southeastern Pacific Ocean reveal a diverse but patchy distribution of phycotoxins.

PubMed

Trefault, N; Krock, B; Delherbe, N; Cembella, A; Vásquez, M

2011-10-01

Phycotoxin distribution and abundance was determined during an oceanographic expedition along a latitudinal transect of 27° extent in the southeastern Pacific Ocean, from the fjords of Tierra del Fuego Island to offshore Copiapó in the Atacama region along the Chilean coast. Plankton samples were harvested at regular intervals during the entire cruise and later analyzed by liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) for domoic acid (DA) and lipophilic toxins. Although no evident toxic algal bloom was encountered during this transect, several phycotoxin analogues from distinct toxin groups were detected. These phycotoxins included DA, the pectenotoxins PTX-2, PTX-2sa and PTX-11, dinophystoxin-1 (DTX-1) and gymnodimine (GYM), which is the first report of this latter toxin in the southeast Pacific. A region-specific and rather disjunct distribution of GYM, DA and DTX-1 was observed, whereas PTX-2, PTX-2sa and PTX-11 were more widely distributed over almost the entire transect. This work represents the first assessment of lipophilic toxins through a wide latitudinal transect of the southeastern Pacific, revealing a patchy distribution of several phycotoxins and pointing out the specific geographical distribution of the putative toxigenic organisms. Copyright © 2011 Elsevier Ltd. All rights reserved.

Cross-Sectional Data for Selected Reaches of the Chattahoochee River within the Chattahoochee River National Recreation Area, Georgia, 2004

USGS Publications Warehouse

Dalton, Melinda S.

2006-01-01

This report presents hydrologic data for selected reaches of the Chattahoochee River within the Chattahoochee River National Recreation Area (CRNRA). Data about transect location, width, depth, and velocity of flow for selected reaches of the river are presented in tabular form. The tables contain measurements collected from shoal and run habitats identified as critical sites for the CRNRA. In shoal habitats, measurements were collected while wading using a digital flowmeter and laser range finder. In run habitats, measurements were collected using acoustic Doppler current profiling. Fifty-three transects were established in six reaches throughout the CRNRA; 24 in shoal habitat, 26 in run habitat, and 3 in pool habitat. Illustrations in this report contain information about study area location, hydrology, transect locations, and cross-sectional information. A study area location figure is followed by figures identifying locations of transects within each individual reach. Cross-sectional information is presented for each transect, by reach, in a series of graphs. The data presented herein can be used to complete preliminary habitat assessments for the Chattahoochee River within the CRNRA. These preliminary assessments can be used to identify reaches of concern for future impacts associated with continual development in the Metropolitan Atlanta area and potential water allocation agreements between Georgia, Florida, and Alabama.

Detection of sea otters in boat-based surveys of Prince William Sound, Alaska

USGS Publications Warehouse

Udevitz, Mark S.; Bodkin, James L.; Costa, Daniel P.

1995-01-01

Boat-based surveys have been commonly used to monitor sea otter populations, but there has been little quantitative work to evaluate detection biases that may affect these surveys. We used ground-based observers to investigate sea otter detection probabilities in a boat-based survey of Prince William Sound, Alaska. We estimated that 30% of the otters present on surveyed transects were not detected by boat crews. Approximately half (53%) of the undetected otters were missed because the otters left the transects, apparently in response to the approaching boat. Unbiased estimates of detection probabilities will be required for obtaining unbiased population estimates from boat-based surveys of sea otters. Therefore, boat-based surveys should include methods to estimate sea otter detection probabilities under the conditions specific to each survey. Unbiased estimation of detection probabilities with ground-based observers requires either that the ground crews detect all of the otters in observed subunits, or that there are no errors in determining which crews saw each detected otter. Ground-based observer methods may be appropriate in areas where nearly all of the sea otter habitat is potentially visible from ground-based vantage points.

Hillslope characterization in terms of geophysical units based on the joint interpretation of electrical resistivity and seismic velocity data

NASA Astrophysics Data System (ADS)

Feskova, Tatiana; Dietrich, Peter

2015-04-01

Hydrological conditions in a catchment depend on many factors such as climatic, geological, geomorphological, biological and human, which interact with each other and influence water balance in a catchment. This interaction leads to the subordination in the landscape structure, namely the weak elements subordinate to the powerful elements. Thereby, geological and geomorphological factors play an essential role in catchment development and organization. A hillslope consequently can be allocated to one class of the representative units because the important flow processes run at the hillslope. Moreover, a hillslope can be subdivided into stratigraphic subsurface units and significant hillslope areas based on the lithological change of contrasting interfaces. The knowledge of subsurface structures is necessary to understand and predicate complex hydrological processes in a catchment. Geophysical techniques provide a good opportunity to explore the subsurface. A complete geophysical investigation of subsurface in a catchment with difficult environmental conditions never will be achieved because of large time effort in the field, equipment logistic, and ambiguity in the data interpretation. The case study demonstrates how a catchment can be investigated using geophysical methods in an effective manner in terms of characterization of representative units with respect to a functional role in the catchment. This case study aims to develop combined resistivity and seismic velocity hillslope subsurface models for the distinction of representative functional units. In order to identify the contrasting interfaces of the hillslope, to localize significant hillslope areas, and to address the ambiguity in the geophysical data interpretation, the case study combined resistivity surveys (vertical electrical soundings and electrical resistivity tomography) with refraction seismic method, and conducted these measurements at one single profile along the hillslope transect and perpendicular to this transect. The measurements along the hillslope transect deliver the two-dimensional hillslope section of resistivity and seismic velocity distribution with contrasting stratigraphic interfaces, whereas the measurements perpendicular to the hillslope transect obtained from vertical electrical soundings survey localize significant hillslope areas indicating existence of two-dimensional features in the subsurface. To demonstrate the suitability of the suggested approach, resistivity and refraction seismic measurements were carried out at the forested gently inclined hillslope in the Weierbach catchment, which belongs to the hydrological observatory Attert Basin locating in the mid-western part of the Grand-Duchy of Luxembourg. This hillslope is characterized by Pleistocene periglacial slope deposits, which plays an important role in the ecosystem functioning. The obtained resistivity and seismic hillslope models of the Weierbech catchment complement well one another. The hillslope models identify three significant hillslope areas along the hillslope called as elementary functional units, and four electrical vertical stratigraphic units and two seismic vertical stratigraphic units that agree with lithological stratigraphy of this study site. In conclusions, the suggested geophysical approach is suitable to characterise a hillslope as the representative unit only at a single transect in the efficient manner in contrast to the expensive 3D-measurements.

Stable isotope differences among the Lake Michigan 2015 CSMI transects

EPA Science Inventory

During the Lake Michigan 2015 Cooperative Science and Monitoring Initiative (CSMI), eight transects situated near tributaries that present a gradient of phosphorus loads were sampled from nearshore to offshore during May, July, and September. Our objective was to evaluate associa...

Accretion in the wake of terrane collision: The Neogene accretionary wedge off Kenai Peninsula, Alaska

USGS Publications Warehouse

Fruehn, J.; von Huene, Roland E.; Fisher, M.A.

1999-01-01

Subduction accretion and repeated terrane collision shaped the Alaskan convergent margin. The Yakutat Terrane is currently colliding with the continental margin below the central Gulf of Alaska. During the Neogene the terrane's western part was subducted after which a sediment wedge accreted along the northeast Aleutian Trench. This wedge incorporates sediment eroded from the continental margin and marine sediments carried into the subduction zone on the Pacific plate. Prestack depth migration was performed on six seismic reflection lines to resolve the structure within this accretionary wedge and its backstop. The lateral extent of the structures is constrained by high-resolution swath bathymetry and seismic lines collected along strike. Accretionary structure consists of variably sized thrust slices that were deformed against a backstop during frontal accretion and underplating. Toward the northeast the lower slope steepens, the wedge narrows, and the accreted volume decreases notwith-standing a doubling of sediments thickness in the trench. In the northeasternmost transect, near the area where the terrane's trailing edge subducts, no frontal accretion is observed and the slope is eroded. The structures imaged along the seismic lines discussed here most likely result from progressive evolution from erosion to accretion, as the trailing edge of the Yakutat Terrane is subducting.

Involvement of hypoglossal and recurrent laryngeal nerves on swallowing pressure.

PubMed

Tsujimura, Takanori; Suzuki, Taku; Yoshihara, Midori; Sakai, Shogo; Koshi, Naomi; Ashiga, Hirokazu; Shiraishi, Naru; Tsuji, Kojun; Magara, Jin; Inoue, Makoto

2018-05-01

Swallowing pressure generation is important to ensure safe transport of an ingested bolus without aspiration or leaving residue in the pharynx. To clarify the mechanism, we measured swallowing pressure at the oropharynx (OP), upper esophageal sphincter (UES), and cervical esophagus (CE) using a specially designed manometric catheter in anesthetized rats. A swallow, evoked by punctate mechanical stimulation to the larynx, was identified by recording activation of the suprahyoid and thyrohyoid muscles using electromyography (EMG). Areas under the curve of the swallowing pressure at the OP, UES, and CE from two trials indicated high intrasubject reproducibility. Effects of transecting the hypoglossal nerve (12N) and recurrent laryngeal nerve (RLN) on swallowing were investigated. Following bilateral hypoglossal nerve transection (Bi-12Nx), OP pressure was significantly decreased, and time intervals between peaks of thyrohyoid EMG bursts and OP pressure were significantly shorter. Decreased OP pressure and shortened times between peaks of thyrohyoid EMG bursts and OP pressure following Bi-12Nx were significantly increased and longer, respectively, after covering the hard and soft palates with acrylic material. UES pressure was significantly decreased after bilateral RLN transection compared with that before transection. These results suggest that the 12N and RLN play crucial roles in OP and UES pressure during swallowing, respectively. We speculate that covering the palates with a palatal augmentation prosthesis may reverse the reduced swallowing pressure in patients with 12N or tongue damage by the changes of the sensory information and of the contact between the tongue and a palates. NEW & NOTEWORTHY Hypoglossal nerve transection reduced swallowing pressure at the oropharynx. Covering the hard and soft palates with acrylic material may reverse the reduced swallowing function caused by hypoglossal nerve damage. Recurrent laryngeal nerve transection reduced upper esophageal sphincter negative pressure during swallowing.

Characterizing the phylogenetic tree community structure of a protected tropical rain forest area in Cameroon.

PubMed

Manel, Stéphanie; Couvreur, Thomas L P; Munoz, François; Couteron, Pierre; Hardy, Olivier J; Sonké, Bonaventure

2014-01-01

Tropical rain forests, the richest terrestrial ecosystems in biodiversity on Earth are highly threatened by global changes. This paper aims to infer the mechanisms governing species tree assemblages by characterizing the phylogenetic structure of a tropical rain forest in a protected area of the Congo Basin, the Dja Faunal Reserve (Cameroon). We re-analyzed a dataset of 11538 individuals belonging to 372 taxa found along nine transects spanning five habitat types. We generated a dated phylogenetic tree including all sampled taxa to partition the phylogenetic diversity of the nine transects into alpha and beta components at the level of the transects and of the habitat types. The variation in phylogenetic composition among transects did not deviate from a random pattern at the scale of the Dja Faunal Reserve, probably due to a common history and weak environmental variation across the park. This lack of phylogenetic structure combined with an isolation-by-distance pattern of taxonomic diversity suggests that neutral dispersal limitation is a major driver of community assembly in the Dja. To assess any lack of sensitivity to the variation in habitat types, we restricted the analyses of transects to the terra firme primary forest and found results consistent with those of the whole dataset at the level of the transects. Additionally to previous analyses, we detected a weak but significant phylogenetic turnover among habitat types, suggesting that species sort in varying environments, even though it is not predominating on the overall phylogenetic structure. Finer analyses of clades indicated a signal of clustering for species from the Annonaceae family, while species from the Apocynaceae family indicated overdispersion. These results can contribute to the conservation of the park by improving our understanding of the processes dictating community assembly in these hyperdiverse but threatened regions of the world.

Transection Speed and Impact on Perioperative Inflammatory Response - A Randomized Controlled Trial Comparing Stapler Hepatectomy and CUSA Resection.

PubMed

Schwarz, Christoph; Klaus, Daniel A; Tudor, Bianca; Fleischmann, Edith; Wekerle, Thomas; Roth, Georg; Bodingbauer, Martin; Kaczirek, Klaus

2015-01-01

Parenchymal transection represents a crucial step during liver surgery and many different techniques have been described so far. Stapler resection is supposed to be faster than CUSA resection. However, whether speed impacts on the inflammatory response in patients undergoing liver resection (LR) remains unclear. This is a randomized controlled trial including 40 patients undergoing anatomical LR. Primary endpoint was transection speed (cm2/min). Secondary endpoints included the perioperative change of pro- and anti-inflammatory cytokines, overall surgery duration, length of hospital stay, morbidity and mortality. Mean transection speed was significantly higher in patients undergoing stapler hepatectomy compared to CUSA resection (CUSA: 1 (0.4) cm2/min vs. Stapler: 10.8 (6.1) cm2/min; p<0.0001). Analyzing the impact of surgery duration on inflammatory response revealed a significant correlation between IL-6 levels measured at the end of surgery and the overall length of surgery (p<0.0001, r = 0.6188). Patients undergoing CUSA LR had significantly higher increase of interleukin-6 (IL-6) after parenchymal transection compared to patients with stapler hepatectomy in the portal and hepatic veins, respectively (p = 0.028; p = 0.044). C-reactive protein levels on the first post-operative day were significantly lower in the stapler cohort (p = 0.010). There was a trend towards a reduced overall surgery time in patients with stapler LR, especially in the subgroup of patients undergoing minor hepatectomies (p = 0.020). Liver resection using staplers is fast, safe and suggests a diminished inflammatory response probably due to a decreased parenchymal transection time. ClinicalTrials.gov NCT01785212.

Precision Topography of Pluvial Features in Nevada as Analogs for Possible Pluvial Landforms on Mars

NASA Astrophysics Data System (ADS)

Zimbelman, J. R.; Garry, W. B.; Irwin, R. P.

2009-12-01

Topographic measurements with better than 2 cm horizontal and 4 cm vertical precision were obtained for pluvial features in Nevada using a Trimble R8 Differential Global Positioning System (DGPS), making use of both real-time kinematic and post-processed kinematic techniques. We collected ten transects across shorelines in the southern end of Surprise Valley, near the California border in NW Nevada, on April 15-17, 2008, plus five transects of shorelines and eight transects of a wavecut scarp in Long Valley, near the Utah border in NE Nevada, on May 5-7, 2009. Each transect consists of topographic points keyed to field notes and photographs. In Surprise Valley, the highstand shoreline was noted at 1533.4 m elevation in 8 of the 10 transects, and several prominent intermediate shorelines could be correlated between two or more transects. In Long Valley, the well preserved highstand shoreline elevation of 1908.7 m correlated (within 0.6 m) to the base of the wavecut scarp along a horizontal distance of 1.2 km. These results demonstrate that adherence to a geopotential elevation level is one of the strongest indicators that a possible shoreline feature is the result of pluvial processes, and that elevation levels of features can be clearly detected and documented with precise topographic measurements. The High Resolution Imaging Science Experiment (HiRISE) is returning images of Mars that show potential shoreline features in remarkable detail (e.g., image PSP_009998_2165, 32 cm/pixel, showing a possible shoreline in NW Arabia). Our results from studying shorelines in Nevada will provide a basis for evaluating the plausibility of possible shoreline features on Mars, the implications of which are significant for the overall history of Mars.

Water-quality data for the Ohio River from New Cumberland Dam to Pike Island Dam, West Virginia and Ohio, June-November 1992

USGS Publications Warehouse

Miller, Kimberly F.; Faulkenburg, C.W.; Chambers, D.B.; Waldron, M.C.

1995-01-01

This report contains water-quality data for the Ohio River, collected during the summer and fall of 1992, from river mile 51.1 (3.3 miles upstream from New Cumberland Dam) to river mile 84.0 (0.2 miles upstream from Pike Island Dam). The data were collected to assess the effects of hydropower development on water quality. Water quality was determined by a combination of repeated synoptic field measurements and laboratory analyses. Synoptic measurements were made along a longitudinal transect with 18 mid-channel sampling sites; cross-sectional transects of water quality were measured at 5 of these sites. Water-quality measurements also were made at two sites located on the back-channel (Ohio) side of Browns Island. Water temperature, dissolved oxygen concentration, pH, and specific conductance were measured at each longitudinal-transect and back-channel sampling site. Longitudinal-transect and back-channel stations were sampled at three depths (about 3.3 feet below the surface of the water, middle of the water column, and near the bottom of the river). Cross-sectional transects consisted of three or four detailed vertical pro- files of the same characteristics. Water samples were collected from three depths at the mid-channel vertical profile in each cross-sectional transect and were analyzed for concentrations of phyto- plankton photosynthetic pigments chlorophyll a and chlorophyll b. Estimates of the depth of light penetration (Secchi disk transparency) were made at pigment-sampling locations whenever light and river-surface conditions were appropriate. Synoptic sampling usually was completed in 12 hours or less and was repeated seven times between June 25 and November 6, 1992.

Sr-Nd-Hf isotopic fingerprinting of transatlantic dust derived from North Africa

NASA Astrophysics Data System (ADS)

Zhao, Wancang; Balsam, William; Williams, Earle; Long, Xiaoyong; Ji, Junfeng

2018-03-01

Long-range transport of African dust plays an important role in understanding dust-climate relationships including dust source areas, dust pathways and associated atmospheric and/or oceanic processes. Clay-sized Sr-Nd-Hf isotopic compositions can be used as geochemical fingerprints to constrain dust provenance and the pathways of long-range transported mineral dust. We investigated the clay-sized Sr-Nd-Hf isotopic composition of surface samples along four transects bordering the Sahara Desert. The transects are from Mali, Niger/Benin/Togo, Egypt and Morocco. Our results show that the Mali transect on the West African Craton (WAC) produces lower εNd (εNd-mean = -16.38) and εHf (εHf-mean = -9.59) values than the other three transects. The Egyptian transect exhibits the lowest 87Sr/86Sr ratios (87Sr/86Srmean = 0.709842), the highest εHf (εHf-mean = -0.34) and εNd values of the four transects. Comparison of the clay-sized Sr-Nd-Hf isotopic values from our North African samples to transatlantic African dust collected in Barbados demonstrates that the dust's provenance is primarily the western Sahel and Sahara as well as the central Sahel. Summer emission dust is derived mainly from the western Sahel and Sahara regions. The source of transatlantic dust in spring and autumn is more varied than in the summer and includes dust not only from western areas, but also south central areas. Comparison of the Sr-Nd-Hf isotopic fingerprints between the source and sink of transatlantic dust also suggests that a northwestward shift in dust source occurs from the winter, through the spring and into the summer. The isotopic data we develop here provide another tool for discriminating changes in dust archives resulting from paleoenvironmental evolution of source regions.

Horizontal traumatic laceration of the pancreas head: A rare case report.

PubMed

Nanashima, Atsushi; Imamura, Naoya; Tsuchimochi, Yuki; Hamada, Takeomi; Yano, Kouichi; Hiyoshi, Masahide; Fujii, Yoshiro; Kawano, Fumiaki; MitsuruTamura

2017-01-01

This case report is intended to inform acute care surgeons about treating rare horizontal laceration of the pancreas head caused by blunt trauma. A 57-year-old woman who sustained blunt abdominal trauma during a car crash was transported to the emergency center of our hospital with unstable vital signs due to hemorrhagic shock. Computed tomography showed transection of the pancreas head and massive intra-abdominal hemorrhage. She was referred for emergency surgery because of a transient response. Laparotomy at five hours after the accident initially revealed consistent massive bleeding from branches of the superior mesenteric artery and vein, which we resolved by suturing the vessels without damaging the main trunks. A horizontal laceration and complete transection of the pancreatic head were then confirmed but the main pancreatic duct remained intact. The lower part of the pancreatic head including the uncus with the attached part of the duodenum was resected, and the pancreatic stump remaining after transection was fixed by suturing. The jejunal limb was attached to the remnant duodenum by side-to-side functional anastomosis. Although gastric emptying was delayed for one month after surgery, the postoperative course was good and the patient recovered at three months thereafter. The embryonic border of pancreas head accompanied with pancreatic divisum was considered for this laceration without disruption of the main pancreatic duct. Blunt pancreatic trauma usually causes vertical transection and thus, horizontal transection is considered rare. The embryological anatomical border between the ventral and dorsal pancreas due to pancreatic divisum was supposed to be transected and therefore the main pancreatic duct was not damaged. Hemorrhagic shock and rare pancreatic head trauma were treated by appropriate intraoperative management. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

USGS Publications Warehouse

Anderson, Gordon H.; Smith, Thomas J.; Balentine, Karen M.

2014-01-01

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin.

Evaluation of cartilage degeneration in a rat model of rotator cuff tear arthropathy

PubMed Central

Kramer, Erik J.; Bodendorfer, Blake M.; Laron, Dominique; Wong, Jason; Kim, Hubert T.; Liu, Xuhui; Feeley, Brian T.

2013-01-01

Introduction Rotator cuff tears are the most common injury seen by shoulder surgeons. Many late stage rotator cuff tear patients develop glenohumeral osteoarthritis as a result of torn cuff tendons, termed cuff tear arthropathy. However, the mechanisms of cuff tear arthropathy have not been fully established. It has been hypothesized that a combination of synovial and mechanical factors contribute equally to the development of cuff tear arthropathy. The goal of this study was to assess the utility of this model in investigating cuff-tear arthropathy. Methods We utilized a rat model which accurately reflects rotator cuff muscle degradation after massive rotator cuff tears through either infraspinatus and supraspinatus tenotomy or suprascapular nerve transection. Using a Modified-Mankin Scoring System (MMS), we found significant glenohumeral cartilage damage following both rotator cuff tenotomy and suprascapular nerve transection after only 12 weeks. Results Cartilage degeneration was similar between groups, and was present on both the humeral head and the glenoid. Denervation of the supraspinatus and infraspinatus muscles without opening the joint capsule caused cartilage degeneration similar to that found in the tendon transection group. Conclusions These results suggest that altered mechanical loading after rotator cuff tears is the primary factor in cartilage degeneration after rotator cuff tears. Clinically, understanding the process of cartilage degeneration after rotator cuff injury will help guide treatment decisions in the setting of rotator cuff tears. Level of evidence Basic Science Study, Animal Model PMID:23664745

Strong latitudinal and vertical biogeography of Synechococcus diversity in the equatorial Pacific Ocean

NASA Astrophysics Data System (ADS)

Martiny, A.; Kent, A. G.; Mouginot, C.; Baer, S. E.; Lomas, M. W.

2016-02-01

Extensive genetic diversity has been observed within Synechococcus including the presence of multiple major clades. However, the biogeography and underlying environmental drivers of these clades remain elusive. Here, we developed a new high-throughput sequencing assay using rpoC1 as marker combined with Illumina sequencing. Using this, we identified the genetic diversity of Synechococcus from 200 samples in an eastern Pacific Ocean transect between 19˚N and 3˚S. We used a placement method to identify the phylogenetic affiliation of each sequence and detected extensive diversity including multiple previously undescribed clades. We observed clear biogeographical domains, with Clade 2 dominant in the northern part of the transect, Clade CRD peaking at the equator, and Clade 1 dominant deeper in the water column throughout the transect. This biogeography, along with physical and nutrient data, suggests that Clade 2 represents a high temperature, low macronutrient ecotype, CRD a high temperature but low iron ecotype, and at least part of Clade 1 a low-light ecotype. The shift between Clade 2 and CRD occurred at 7˚N, whereas the concentration of macronutrients was low down to 4˚N, before increasing. This biogeography indicates that Synechococcus cells experience iron stress up to 7˚N despite low concentrations of phosphate and nitrate. The overall biogeography closely matched the distribution of Prochlorococcus diversity in this region, suggesting a parallel evolution of ecotypes in these two major lineages of marine Cyanobacteria.

Adaptability to Changes in Temporal Structure Is Fornix-Dependent

ERIC Educational Resources Information Center

Kwok, Sze Chai; Mitchell, Anna S.; Buckley, Mark J.

2015-01-01

Recognition memory deficits, even after short delays, are sometimes observed following hippocampal damage. One hypothesis links the hippocampus with processes in updating contextual memory representation. Here, we used fornix transection, which partially disconnects the hippocampal system, and compares the performance of fornix-transected monkeys…

Adaptability to Changes Intemporal Structure Is Fornix-Dependent

ERIC Educational Resources Information Center

Kwok, Sze Chai; Mitchell, Anna S.; Buckley, Mark J.

2015-01-01

Recognition memory deficits, even after short delays, are sometimes observed following hippocampal damage. One hypothesis links the hippocampus with processes in updating contextual memory representation. Here, we used fornix transection, which partially disconnects the hippocampal system, and compares the performance of fornix-transected monkeys…

Baseline channel morphology and bank erosion inventory of South Fork Campbell Creek at Campbell Tract, Anchorage, Alaska, 1999 and 2000

USGS Publications Warehouse

Curran, Janet H.

2001-01-01

South Fork Campbell Creek drains largely undeveloped land in Anchorage, Alaska, but supports heavy use near the Bureau of Land Management (BLM) Campbell Tract facility for recreation and environmental education. To help assess the impacts of human activities in the basin on biological communities, particularly aquatic and terrestrial biota, morphological changes to the channel bed and banks were monitored for 2 years. Erosion conditions and rates of change were measured and 11 transects were surveyed in three reaches of Campbell Creek near the BLM Campbell Creek Science Center in 1999. Repeat measurements at these 33 transects in 2000 documented noticeable differences between horizontal or vertical channel position at eight transects. Repeat measurements of 51 erosion pins at the survey transects provided details of bank erosion between the 2 years. Annual erosion rates at the erosion pins ranged from 0.81 foot per year of erosion to 0.16 foot per year of deposition.

Litmus paper helps detect potential pancreatoenterostomy leakage.

PubMed

Yamaguchi, K; Chijiwa, K; Shimizu, S; Yokohata, K; Tanaka, M

1998-03-01

Leakage of pancreatoenterostomy remains as a serious and fatal complication after pancreatectomy. Several risk factors have been reported, ie, normal pancreatic parenchyma, small pancreatic duct, a large amount of intraoperative blood loss, management of the cut surface of the pancreas, and the presence of preoperative jaundice. Transected pancreatic ductules on the cut surface of the pancreas that are not drained into the main pancreatic duct after pancreatectomy are one of the risks. The pancreatic juice is alkaline and turns red litmus to blue. In order to detect the transected pancreatic ductules on the cut surface of the pancreas, red litmus paper is applied to the cutting surface of the pancreas after stimulation of secretin. Nondrained, transected pancreatic ductules on the cut surface of the pancreas can be detected as blue spots on the red litmus paper. The corresponding areas to the blue spots can be transfixed with sutures to close the nondrained and transected pancreatic ductules. Litmus paper can be expected to detect pancreatoenterostomy leakage after pancreatectomy.

Double transosseous pull out suture technique for transection of posterior horn of medial meniscus.

PubMed

Ahn, Jin Hwan; Wang, Joon Ho; Lim, Hong Chul; Bae, Ji Hoon; Park, Joon Soo; Yoo, Jae Chul; Shyam, Ashok Kumar

2009-03-01

Transection injury (complete radial tear, root tear) in the posterior horn of medial meniscus will lead to loss of hoop strain, extrusion of the meniscus and early degenerative changes. The posterior horn of medial meniscus is amenable to repair due to its good blood supply and repair is the procedure of choice for these injuries. In cases of transection of the medial meniscus posterior horn, the meniscus can be repaired by a pull out suture technique using trans-septal portal. The single transosseous pull out suturing technique is a point fixation technique with limited contact area having low and inhomogeneous contact pressure. This article describes a double transosseous pull out suture technique using trans-septal portal for the repair of transection of posterior horn of medial meniscus. Use of double transosseous technique provides more secure fixation, more homogeneous and wider contact pressure area between meniscus and the bone, improving the healing potential of the repair.

Intervention analysis of power plant impact on fish populations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Madenjian, C.P.

1984-10-01

Intervention analysis was applied to 10 yr (years 1973-1982) of field fish abundance data at the D. C. Cook Nuclear Power Plant, southeastern Lake Michigan. Three log-transformed catch series, comprising monthly observations, were examined for each combination of two species (alewife, Alosa pseudoharenga, or yellow perch, Perca flavescens) and gear (trawl or gill net): catch at the plant discharged transect, catch at the reference transect, and the ratio of plant catch to reference catch. Time series separated by age groups were examined. Based on intervention analysis, no change in the abundance of fish populations could be attributed to plant operation.more » Additionally, a modification of the intervention analysis technique was applied to investigate trends in abundance at both the plant discharge and reference transects. Significant declines were detected for abundance of alewife adults at both of the transects. Results of the trend analysis support the contention that the alewives have undergone a lakewide decrease in abundance during the 1970s.« less

UAV, DGPS, and Laser Transit Mapping of Microbial Mat Ecosystems on Little Ambergris Cay, B.W.I.

NASA Astrophysics Data System (ADS)

Stein, N.; Quinn, D. P.; Grotzinger, J. P.; Fischer, W. W.; Knoll, A. H.; Cantine, M.; Gomes, M. L.; Grotzinger, H. M.; Lingappa, U.; Metcalfe, K.; O'Reilly, S. S.; Orzechowski, E. A.; Riedman, L. A.; Strauss, J. V.; Trower, L.

2016-12-01

Little Ambergris Cay is a 6 km long, 1.6 km wide uninhabited island on the Caicos platform in the Turks and Caicos. Little Ambergris provides an analog for the study of microbial mat development in the sedimentary record. Recent field mapping during July of 2016 used UAV- and satellite-based images, differential GPS (DGPS), and total station theodolite (TST) measurements to characterize sedimentology and biofacies across the entirety of Little Ambergris Cay. Nine facies were identified in-situ during DGPS island transects including oolitic grainstone bedrock, sand flats, cutbank and mat-filled channels, hardground-lined bays with EPS-rich mat particles, mangroves, EPS mats, polygonal mats, and mats with blistered surface texture. These facies were mapped onto a 15 cm/pixel visible light orthomosaic of the island generated from more than 1500 nadir images taken by a UAV at 350 m standoff distance. A corresponding stereogrammetric digital elevation map was generated from drone images and 910 DGPS measurements acquired during several island transects. More than 1000 TST measurements provide additional facies elevation constraints, control points for satellite-based water depth calculations, and means to cross-calibrate and reconstruct the topographic profile of bedrock exposed at the beach. Additionally, the thickness of the underlying Holocene sediment fill was estimated over several island transects using a depth probe. Sub-cm resolution drone-based orthophotos of microbial mats were used to quantify polygonal mat size and textures. The mapping results highlight that sedimentary and bio-facies (including mat morphology and fabrics) correlate strongly with elevation. Notably, mat morphology was observed to be highly sensitive to cm-scale variations in topography and water depth. The productivity metric NDVI was computed for mat and vegetation facies using nadir images from a UAV-mounted two-band red-NIR camera. In combination with in situ facies mapping, these measurements provided ground truth for reduction of multispectral Landsat and Worldview-2 satellite images to evaluate mat distribution and diversity across a range of spatial and spectral facies variations.

Non-transectional open gastric bypass as the definitive bariatric procedure for 61 patients with BMI of 70 and higher.

PubMed

Slotman, Gus J

2010-01-01

Technical difficulties in laparoscopic gastric bypass for severely obese patients have led to sleeve gastrectomy first and then laparoscopic gastric bypass as a second stage after significant weight loss. Rather than commit these fragile patients to two operations, we have done open gastric bypass as a definitive surgical treatment for extreme obesity. Office records of 61 patients with body mass index (BMI) of 70 and higher were reviewed. All underwent non-transectional open gastric bypass with a 150 cm Roux limb. Data included age, sex, weight, BMI, co-morbidities, operative information, length of stay (LOS), surgical morbidity, and percent excess weight loss (%XSWL). Data are in median (range). There were 21 (34%) men and 40 (66%) women: age, 37 years (19-53); pre-operative weight, 468 lb (300-650); and pre-operative BMI, 77 (70-95). Co-morbidities were diabetes mellitus, 26 (46%); hypertension, 26 (43%); sleep apnea, 61 (100%); gastroesophageal reflux disease, 20 (33%); and hypothyroid nine (15%). Incision length was 15 cm (12-20), abdominal wall fat thickness was 8 cm (5-13), operative time was 150 min (100-210), and estimated blood loss was 100 ml (25-750); post-op intensive care unit: yes 16 (26%) and no 44 (74%). LOS was 3 days for 44 patients (74%), 4 days for 11 (18%), 5 days for five (8%), and 7 days for one (1.6%). Post-operative morbidity was as follows: zero mortality, splenectomy, stoma leak, deep venous thrombosis, pulmonary embolus, GI bleeding, stomal ulcer, intestinal obstruction, fascial dehiscence, or 30-day readmission; wound infections in one (1.6%); skin wound separation in six (10%); pneumonia in one (1.6%); anemia in nine (14.8%); vitamin B(12) deficiency in six (10%); incisional hernia in 17 (28%); and gastric staple line disruption in two (3.3%). %XSWL were 51% in 1 year (28-84) and 60% in 2 years (27-97). Non-transectional open gastric bypass for patients with BMI of 70 and higher is safe and effective as a one-stage operation for severe obesity.

Long-term population survey of the Sulawesi black macaques (Macaca nigra) at Tangkoko Nature Reserve, North Sulawesi, Indonesia.

PubMed

Kyes, Randall C; Iskandar, Entang; Onibala, Jane; Paputungan, Umar; Laatung, Sylvia; Huettmann, Falk

2013-01-01

The Sulawesi black macaque (Macaca nigra) population at Tangkoko Nature Reserve in North Sulawesi, Indonesia has been the focus of periodic study for over 30 years. The population has shown considerable decline during much of that time. Here we present the results of a long-term population survey of the Tangkoko M. nigra, conducted over the past decade, to provide updated information and on-going assessment of the population. Line-transect sampling was conducted annually from 1999 to 2002 and 2005 to 2011 along the same transect during a 2- to 3-week survey period. Although further decline in the population was observed at the outset of the survey, over the subsequent 12-year period we have seen stability in the population parameters with evidence of modest increases in both group and population density. During the 1999-2002 survey periods, there was a mean group density of 3.6 groups/km(2) and a mean population density of 39.8 individuals/km(2) . During 2005-2011, mean group density increased to 3.8 groups/km(2) and mean population density was 51.4 individuals/km(2) . The 2011 survey data indicated an estimated group density of 4.3 groups/km(2) and a population density of 61.5 individuals/km(2) . Given that our transect was located in the core of the Tangkoko reserve, our density estimates should be limited to that area of the reserve. One explanation for the apparent stabilization of the population may be tied to the increasing and sustained number of training and research programs being conducted at the reserve. This collective effort by local and international groups may be helping to reduce illegal activity in the reserve (i.e., hunting and habitat destruction) and generate greater awareness of this critically endangered species. Without the continued vigilance afforded by the existing research and training programs and the support and involvement of the local people, the M. nigra at the Tangkoko Nature Reserve will likely face further decline. © 2012 Wiley Periodicals, Inc.

Modern pollen data from the Canadian Arctic, 1972-1973

NASA Astrophysics Data System (ADS)

Nichols, Harvey; Stolze, Susann

2017-05-01

This data descriptor reports results of a 1972-73 baseline study of modern pollen deposition in the Canadian Arctic to originally aid interpretation of Holocene pollen diagrams from that region, especially focussed on the arctic tree-line. The data set is geographically unique due to its extent, and allows the assessment of the effects of modern climate change on northern ecosystems, including fluctuations of the a arctic tree-line. Repeated sampling was conducted along an interior transect at 29 sites from the Boreal Forest to the High Arctic, with five additional coastal sites covering a total distance of 3,200 km. Static pollen samplers captured both local pollen and long-distance pollen wind-blown from the Boreal Forest. Moss and lichen polsters provided multi-year pollen fallout to assess the effectiveness of the static pollen samplers. The local vegetation was recorded at each site. This descriptor provides information on data archived at the World Data Center PANGAEA, which includes spreadsheets detailing site and sample information as well as raw and processed pollen data obtained on over 500 samples.

Modern pollen data from the Canadian Arctic, 1972-1973.

PubMed

Nichols, Harvey; Stolze, Susann

2017-05-16

This data descriptor reports results of a 1972-73 baseline study of modern pollen deposition in the Canadian Arctic to originally aid interpretation of Holocene pollen diagrams from that region, especially focussed on the arctic tree-line. The data set is geographically unique due to its extent, and allows the assessment of the effects of modern climate change on northern ecosystems, including fluctuations of the a arctic tree-line. Repeated sampling was conducted along an interior transect at 29 sites from the Boreal Forest to the High Arctic, with five additional coastal sites covering a total distance of 3,200 km. Static pollen samplers captured both local pollen and long-distance pollen wind-blown from the Boreal Forest. Moss and lichen polsters provided multi-year pollen fallout to assess the effectiveness of the static pollen samplers. The local vegetation was recorded at each site. This descriptor provides information on data archived at the World Data Center PANGAEA, which includes spreadsheets detailing site and sample information as well as raw and processed pollen data obtained on over 500 samples.

Modern pollen data from the Canadian Arctic, 1972–1973

PubMed Central

Nichols, Harvey; Stolze, Susann

2017-01-01

This data descriptor reports results of a 1972–73 baseline study of modern pollen deposition in the Canadian Arctic to originally aid interpretation of Holocene pollen diagrams from that region, especially focussed on the arctic tree-line. The data set is geographically unique due to its extent, and allows the assessment of the effects of modern climate change on northern ecosystems, including fluctuations of the a arctic tree-line. Repeated sampling was conducted along an interior transect at 29 sites from the Boreal Forest to the High Arctic, with five additional coastal sites covering a total distance of 3,200 km. Static pollen samplers captured both local pollen and long-distance pollen wind-blown from the Boreal Forest. Moss and lichen polsters provided multi-year pollen fallout to assess the effectiveness of the static pollen samplers. The local vegetation was recorded at each site. This descriptor provides information on data archived at the World Data Center PANGAEA, which includes spreadsheets detailing site and sample information as well as raw and processed pollen data obtained on over 500 samples. PMID:28509898

Seismic velocity structure of the sediment seaward of Cascadia Subduction Zone deformation front

NASA Astrophysics Data System (ADS)

Han, S.; Gibson, J. C.; Carbotte, S. M.; Canales, J. P.; Nedimovic, M. R.; Carton, H. D.

2015-12-01

We present seismic velocity structure of the sediment section seaward of the Cascadia Subduction Zone deformation front (DF), derived from multichannel seismic data acquired during the 2012 Juan de Fuca Ridge to Trench experiment. Detailed velocity analyses are conducted on every 100th prestack-time-migrated common reflection point gather (625 m spacing) within 45 km seaward of the DF along two ridge-to-trench transects offshore Oregon at 44.6˚N and Washington at 47.4˚N respectively, and on every 200th common mid-point gather (1250 m spacing) along a ~400 km-long trench-parallel transect ~15 km from the DF. We observe a landward increase of sediment velocity starting from ~15-20 km from the DF on both Oregon and Washington transects, which may result from increased horizontal compressive tectonic stress within the accretionary wedge and thermally induced dehydration processes in the sediment column. Although the velocity of near-basement sediments at 30 km from the DF is similar (~3.1 km/s) on both transects, the velocity increases are larger on the Washington transect, to ~4.0 km/s beneath the DF (sediment thickness ~3.2 km), than on the Oregon transect, to ~3.6 km/s beneath the DF (sediment thickness ~3.5 km). The long-wavelength sediment velocity structure on the trench-parallel transect confirms this regional difference in deep sediment velocity and also highlights variations related to a group of WNW-trending strike-slip faults along the margin. Offshore Washington, where higher sediment velocity seaward of the DF is observed, the accretionary wedge is wide with a decollement located close to the basement and landward-verging thrust faults. By contrast, offshore Oregon, the lower sediment velocity seaward of the DF is associated with a narrow accretionary wedge, a shallow decollement ~1 km above the basement, and seaward-verging thrust faults. The regional differences in deep sediment velocity may be related to the along-strike variation in sediment composition, esp. clay mineral content, which may modulate the pore fluid pressure in the sediment through dehydration reactions, and affect the mechanical properties of the accretionary wedge further landward.

Identifying localized and scale-specific multivariate controls of soil organic matter variations using multiple wavelet coherence.

PubMed

Zhao, Ruiying; Biswas, Asim; Zhou, Yin; Zhou, Yue; Shi, Zhou; Li, Hongyi

2018-06-23

Environmental factors have shown localized and scale-dependent controls over soil organic matter (SOM) distribution in the landscape. Previous studies have explored the relationships between SOM and individual controlling factors; however, few studies have indicated the combined control from multiple environmental factors. In this study, we compared the localized and scale-dependent univariate and multivariate controls of SOM along two long transects (northeast, NE transect and north, N transect) from China. Bivariate wavelet coherence (BWC) between SOM and individual factors and multiple wavelet coherence (MWC) between SOM and factor combinations were calculated. Average wavelet coherence (AWC) and percent area of significant coherence (PASC) were used to assess the relative dominance of individual and a combination of factors to explain SOM variations at different scales and locations. The results showed that (in BWC analysis) mean annual temperature (MAT) with the largest AWC (0.39) and PASC (16.23%) was the dominant factor in explaining SOM variations along the NE transect. The topographic wetness index (TWI) was the dominant factor (AWC = 0.39 and PASC = 20.80%) along the N transect. MWC identified the combination of Slope, net primary production (NPP) and mean annual precipitation (MAP) as the most important combination in explaining SOM variations along the NE transect with a significant increase in AWC and PASC at different scales and locations (e.g. AWC = 0.91 and PASC = 58.03% at all scales). The combination of TWI, NPP and normalized difference vegetation index (NDVI) was the most influential along the N transect (AWC = 0.83 and PASC = 32.68% at all scales). The results indicated that the combined controls of environmental factors on SOM variations at different scales and locations in a large area can be identified by MWC. This is promising for a better understanding of the multivariate controls in SOM variations at larger spatial scales and may improve the capability of digital soil mapping. Copyright © 2018 Elsevier B.V. All rights reserved.

Propagation of vent CO2 in a subtropical shallow-water ecosystem assessed by stable carbon isotopes

NASA Astrophysics Data System (ADS)

Cheng, Y. F.; Chen, C. T. A.; Liao, Y. M.; Lin, Y. S.

2016-02-01

Carbon cycle of the ocean plays an important role in the global change associated with the emission of CO2. Anthropogenic CO2 dissolves in seawater, changes carbon chemistry of the ocean, and affects marine life in different and complicated ways. In this study, we investigated stable carbon isotope systematics of a shallow-water hydrothermal field near the Kueishantao Islet off NE Taiwan, which has vent gas composition dominated by CO2 and world record breaking low pH hydrothermal fluids. By studying this natural laboratory of ocean acidification, we aim at clarifying to which extent the high dosage of CO2 propagates in the subtropical shallow-water ecosystem, and how it affects the carbon cycle. Samples of seawater and suspended particles were collected from stations of two nearshore-offshore transects, one with hydrothermal vents at the nearshore end (Transect M, 1230 m long) and the other serving as the baseline (Transect B, 1560 m long). Surface seawater of Transect M showed increasing pH in the offshore direction, from 5.8 at the vent mouths to 7.6 at the most distant station. In contrast, pH of surface water decreased seaward from 8.0 to 7.8 in Transect B. The δ13C values of the vent CO2 averaged -6.4‰, consistent with the range attributed to mantle CO2. Seawater DIC δ13C values of Transect M were 13C-depleted (as negative as -2.5‰) at the vent mouths, and became increasingly 13C-enriched till 0.7‰ at the most distant station. This pattern is in clear contrast to that of Transect B, the DIC δ13C values of which decreased from 0.7 to 0.6 ‰ in the offshore direction. We concluded that the vent CO2 has propagated in the surface ocean at least >700 m away from the hydrothermal field. Our next step is to explore how the vent CO2 affects the stable carbon isotopes of particulate organic matter, and to assess the effect of vent CO2 using quantitative approaches.

Response of frugivorous primates to changes in fruit supply in a northern Amazonian forest.

PubMed

Mourthé, I

2014-08-01

Few attempts have been made to understand how spatiotemporal changes in fruit supply influence frugivores in tropical forests. The marked spatiotemporal variation in fruit supply can affect frugivore abundance and distribution, but studies addressing the effects of this variation on primates are scarce. The present study aimed to investigate how the spatiotemporal distribution of fruits influences the local distribution of three frugivorous primates in the eastern part of the Maracá Ecological Station, a highly seasonal Amazonian rainforest. Specifically, it was hypothesised that primate distribution will track changes in fruit supply, resulting that sites with high fruit availability should be heavily used by primates. During a 1-year study, fruit supply (ground fruit surveys) and primate density (line-transects) were monitored in twelve 2 km-long transects at monthly intervals. Fruit supply varied seasonally, being low during the dry season. The density of Ateles belzebuth was positively related to fruit supply during fruit shortage, but Cebus olivaceus and Alouatta macconnelli did not follow the same pattern. The supply of Sapotaceae fruit was an important component determining local distribution of A. belzebuth during the overall fruit shortage. Highly frugivorous primates such as A. belzebuth respond to seasonal decline in fruit supply by congregating at places with high fruit supply in this forest, particularly, those with many individuals of species of Sapotaceae. This study underscores the importance of small-scale spatiotemporal changes of fruit supply as a key component of frugivorous primate ecology in highly seasonal environments.

Effect of salinity changes on the bacterial diversity, photosynthesis and oxygen consumption of cyanobacterial mats from an intertidal flat of the Arabian Gulf.

PubMed

Abed, Raeid M M; Kohls, Katharina; de Beer, Dirk

2007-06-01

The effects of salinity fluctuation on bacterial diversity, rates of gross photosynthesis (GP) and oxygen consumption in the light (OCL) and in the dark (OCD) were investigated in three submerged cyanobacterial mats from a transect on an intertidal flat. The transect ran 1 km inland from the low water mark along an increasingly extreme habitat with respect to salinity. The response of GP, OCL and OCD in each sample to various salinities (65 per thousand, 100 per thousand, 150 per thousand and 200 per thousand) were compared. The obtained sequences and the number of unique operational taxonomic units showed clear differences in the mats' bacterial composition. While cyanobacteria decreased from the lower to the upper tidal mat, other bacterial groups such as Chloroflexus and Cytophaga/Flavobacteria/Bacteriodetes showed an opposite pattern with the highest dominance in the middle and upper tidal mats respectively. Gross photosynthesis and OCL at the ambient salinities of the mats decreased from the lower to the upper tidal zone. All mats, regardless of their tidal location, exhibited a decrease in areal GP, OCL and OCD rates at salinities > 100 per thousand. The extent of inhibition of these processes at higher salinities suggests an increase in salt adaptation of the mats microorganisms with distance from the low water line. We conclude that the resilience of microbial mats towards different salinity regimes on intertidal flats is accompanied by adjustment of the diversity and function of their microbial communities.

Turkey vulture surveys in Cuba

USGS Publications Warehouse

Wotzkow, C.; Wiley, J.W.

1988-01-01

Turkey Vultures (Cathartes aura), were surveyed monthly in Cuba from March 1982-January 1983. A total of 25371 vultures were tallied in 7186 km (3.5 vultures/transect km) of roadside counting along main highways leading from the city of La Habana (northwestern Cuba) to the city of Las Tunas (southeast). Numbers of vultures counted declined substantially beyond 200 m from the transect road. Density of vultures observed within 200 m of the road along the transect route was 0.06/ha. Highest counts were obtained in March, April and June. Turkey Vulture flying activity was greatest during the periods 0900-1200 H and 1400-1700 H.

Persulfate injection into a gasoline source zone.

PubMed

Sra, Kanwartej S; Thomson, Neil R; Barker, Jim F

2013-07-01

One pore volume of unactivated sodium persulfate was delivered into an emplaced gasoline residual source zone at CFB Borden. Concentrations of inorganic species (S2O8(2-), SO4(2-), Na(+), dissolved inorganic carbon (DIC)) and selected gasoline compounds (benzene, toluene, ethylbenzene, xylenes, trimethylbenzenes and naphthalene) were monitored across a transect equipped with 90 multilevel sampling points for >10months post-injection. Mass loading (M˙) of compounds constructed from the transect data was used for assessment purposes. Breakthrough of inorganic species was observed when the injection slug crossed the monitoring transect. An increase in [Formula: see text] indicated persulfate consumption during oxidation of gasoline compounds or degradation due to the interaction with aquifer materials. M˙DIC increased by >100% suggesting some mineralization of gasoline compounds during treatment. Mass loading for all the monitored gasoline compounds reduced by 46 to 86% as the inorganic slug crossed the monitoring transect. The cumulative mass discharge across the monitoring transect was 19 to 58% lower than that expected without persulfate injection. After the inorganic injection slug was flushed from the source zone a partial rebound (40 to 80% of baseline levels) of mass discharge of the monitored gasoline compounds was observed. The ensemble of data collected provides insight into the fate and transport of the injected persulfate solution, and the accompanying treatment of a gasoline the source zone. Copyright © 2013 Elsevier B.V. All rights reserved.

A comparison between boat-based and diver-based methods for quantifying coral bleaching

USGS Publications Warehouse

Zawada, David G.; Ruzicka, Rob; Colella, Michael A.

2015-01-01

Recent increases in both the frequency and severity of coral bleaching events have spurred numerous surveys to quantify the immediate impacts and monitor the subsequent community response. Most of these efforts utilize conventional diver-based methods, which are inherently time-consuming, expensive, and limited in spatial scope unless they deploy large teams of scientifically-trained divers. In this study, we evaluated the effectiveness of the Along-Track Reef Imaging System (ATRIS), an automated image-acquisition technology, for assessing a moderate bleaching event that occurred in the summer of 2011 in the Florida Keys. More than 100,000 images were collected over 2.7 km of transects spanning four patch reefs in a 3-h period. In contrast, divers completed 18, 10-m long transects at nine patch reefs over a 5-day period. Corals were assigned to one of four categories: not bleached, pale, partially bleached, and bleached. The prevalence of bleaching estimated by ATRIS was comparable to the results obtained by divers, but only for corals > 41 cm in size. The coral size-threshold computed for ATRIS in this study was constrained by prevailing environmental conditions (turbidity and sea state) and, consequently, needs to be determined on a study-by-study basis. Both ATRIS and diver-based methods have innate strengths and weaknesses that must be weighed with respect to project goals.

Conjugation with the Central Asian Foldbelt: Interpretation of the 3DV and Tynda-Amurzet Transects

NASA Astrophysics Data System (ADS)

Kheraskova, T. N.; Yakovlev, D. V.; Pimanova, N. N.; Berezner, O. S.

2018-01-01

In this paper we consider the results of geological interpretation of 3DV (Tommot-Skovorodino segment) and Tynda-Amurzet geophysical transects crosscutting the Aldan Shield and the Stanovoi Granite-Greenstone Domain of the Siberian Platform; the Selengino-Stanovoi, Mongolia-Okhotsk, and Gobi-Hinggang foldbelts; and the Argun and Mamyn microcontinents with a total extent of sections of about 1000 km and depth of about 40 km. The data of previous studies and follow-up electric conductivity information have been used. The data of geological mapping, subject studies, and insights into the deep-seated structure of the considered territory obtained with a complex of geophysical methods are discussed. It is shown that Mesozoic strike-slip and thrust faults play the leading role in the present-day structure of the territory and in control rifting and mantle diapirism. It is suggested that Californian-type metamorphic nuclei, which are of structure-forming significance for adjacent territories in the west, have also developed in the studied region.

The relationship between satellite-derived indices and species diversity across African savanna ecosystems

NASA Astrophysics Data System (ADS)

Mapfumo, Ratidzo B.; Murwira, Amon; Masocha, Mhosisi; Andriani, R.

2016-10-01

The ability to use remotely sensed diversity is important for the management of ecosystems at large spatial extents. However, to achieve this, there is still need to develop robust methods and approaches that enable large-scale mapping of species diversity. In this study, we tested the relationship between species diversity measured in situ with the Normalized Difference Vegetation Index (NDVI) and the Coefficient of Variation in the NDVI (CVNDVI) derived from high and medium spatial resolution satellite data at dry, wet and coastal savanna woodlands. We further tested the effect of logging on NDVI along the transects and between transects as disturbance may be a mechanism driving the patterns observed. Overall, the results of this study suggest that high tree species diversity is associated with low and high NDVI and at intermediate levels is associated with low tree species diversity and NDVI. High tree species diversity is associated with high CVNDVI and vice versa and at intermediate levels is associated with high tree species diversity and CVNDVI.

[Vehicle-assisted suicide with a nylon rope causing complete decapitation].

PubMed

Blässer, Katharina; Tatschner, Thomas; Bohnert, Michael

2013-01-01

The present case deals with the unusual suicide method of a 36-year-old man who fastened one end of a nylon rope to a tree, guided the other end into a van through the open tailgate and placed the loop round his neck. Then he stepped on the accelerator. Before, he had marked the point on the ground where the rope would tighten. As the rope tightened complete decapitation occurred at a speed of about 35 km/h. Autopsy showed a nearly circular abrasion zone around the site of transection slightly ascending towards the nape, a fracture of the cervical spine between the 3rd and 4th vertebra and a fracture of the thoracic spine between the 7th and 8th vertebra. The test for air embolism of the heart was positive. Macroscopically, no evidence of blood aspiration was found. Histological investigation showed general anaemia and minor blood aspiration in the lungs. Wound morphology was largely in line with the injury patterns described after decapitation in the literature. However, our results differed in that blood aspiration was discernible only under the microscope and there was a second fracture of the spine. Decapitation as a suicide method is an expression of enormous autoaggression and is categorized as a "hard" suicide method. It is used predominantly by men and its occurrence in the spectrum of suicidal actions is rare. Police investigations revealed that the man had led a sort of double life with a sexually motivated background and had suffered from depressive episodes.

Monoaxial external fixation of the calcaneus: An anatomical study assessing the safety of monoaxial pin insertion.

PubMed

Thomson, Callum M; Esparon, Tom; Rea, Paul M; Jamal, Bilal

2016-10-01

The use of external fixation for intra-articular calcaneal fractures is increasing in popularity. Studies have shown fine wire and monoaxial external fixation to be a viable surgical alternative to more invasive methods of open reduction and internal fixation of the calcaneus. However, there is an absence of literature that quantifies the risk of pin insertion for monoaxial fixation. This study aimed to determine the safety of inserting monoaxial pins within the calcaneus to house the Orthofix Calcaneal Mini-Fixator. Five formalin embalmed cadaveric ankle and lower leg specimens were inserted with six monoaxial pins. Careful dissection then revealed the presence of the tendons of peroneus longus and brevis, the sural nerve and the small saphenous vein in relation to these pins. Measurements from each pin to each of these structures were made as the structures transected lines drawn from each pin to two palpable bony landmarks: the inferior tip of the lateral malleolus and the posterosuperior calcaneus. In doing this, the risk posed by each pin could be evaluated. We found that two particular pins, those used to hold the articular surface of the subtalar joint in a reduced position, posed a larger risk of injury to surrounding structures than the remaining pins. These findings therefore suggest that monoaxial fixation of the calcaneus using a six pin approach is a relatively safe method of rectifying calcaneal fractures and thus may serve as a welcome alternative to other methods of calcaneal fixation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Management of staple line leaks after sleeve gastrectomy in a consecutive series of 378 patients.

PubMed

Vix, Michel; Diana, Michele; Marx, Ludovic; Callari, Cosimo; Wu, Hurng-Sheng; Perretta, Silvana; Mutter, Didier; Marescaux, Jacques

2015-02-01

Laparoscopic sleeve gastrectomy (LSG) is gaining acceptance as a stand-alone bariatric procedure with proven efficacy on weight loss and obesity-related comorbidities. A specific and potentially severe complication of LSG is the staple line leak (SLL). Our aim was to report the SLL rate and its management in a prospective cohort of 378 LSGs. A total of 378 patients underwent LSG from July 2005 to July 2011. The gastric transection was performed by an initial 60 mm firing of 4.5 mm staples at the antrum and successive 60 mm firings of 3.5 mm staples at the gastric body and fundus toward the left diaphragmatic crus. A 36 Fr bougie was used to calibrate the gastric tube. The staple line was systematically reinforced with a partial-thickness running suture. The overall complications and SLL rate were 20/378 (5.29%) and 9/378 (2.38%), respectively. SLLs were managed by laparoscopic (n=2) or open (n=1) exploration, drainage and endoscopic self-expandable covered stent, computed tomography-guided percutaneous drainage (n=2), or a self-expandable covered stent alone (n=4). Medical support including total parenteral nutrition and adapted antibiotics was started in all patients. The combined treatment modalities were successful in all cases. SLL was the most common complication of LSG accounting for half of the overall complications. Percutaneous drainage and self-covered stents combined with antibiotics and parenteral nutrition are effective for SLL and should be proposed as first-line treatment in stable patients.

Depth Derivation from the Worldview-2 Satellite Using Hyperspectral Imagery

DTIC Science & Technology

2009-03-01

6 C. MULTISPECTRAL IMAGERY FROM QUICKBIRD ..............................7 D . HYPERSPECTRAL IMAGERY FROM AVIRIS...27 D . TRANSECTS .................................................................................................29 1. Transect 1...520-600nm), red (630-690nm) and near-IR (760-900nm). Figure 4. Quickbird Satellite (from: http://www.digitalglobe.com/index.php/85/QuickBird) D

AMPHIPOD COMMUNITY RESPONSE TO STRESS INDUCED BY ALGAL MATS IN A PACIFIC NORTHWEST ESTUARY

EPA Science Inventory

Amphipod, algal and sediment samples were taken at two- to four-week intervals from June through December, 2000 along two transects in Yaquina Bay, OR. The transects extended from within the Zostera marina bed at the river channel edge through intertidal burrowing shrimp ...

Measuring the Thermal Conductivity of Sediments for the Estimation of Groundwater Discharge to Surface Waters with Temperature Probes

NASA Astrophysics Data System (ADS)

Duque, C.; Müller, S.; Sebok, E.; Engesgaard, P. K.

2015-12-01

Using temperature probes is a common exploratory method for studying groundwater-surface water interaction due to the ease for collecting measurements and the simplicity of the different analytical solutions. This approach requires to define the surface water temperature, the groundwater temperature and a set of parameters (density and specific capacity of water, and thermal conductivity of sediments) that can be easily extracted from tabulated values under the assumption that they are homogeneous in the study area. In the case of the thermal conductivity, it is common to apply a standard value of 1.84 Wm-1 C-1 corresponding to sand. Nevertheless the environments where this method is applied, like streambeds or lake/lagoons shores, are sedimentary depositional systems with high energy and biological activity that often lead to sediments dominated by organic matter or sharp changes in grain size modifying greatly the thermal conductivity values. In this study, the thermal conductivity was measured in situ along transects where vertical temperature profiles were collected in a coastal lagoon bed receiving groundwater discharge (Ringkøbing Fjord, Denmark). A set of 4 transects with 10-20 temperature profiles during 3 different seasons was analyzed together with more than 150 thermal conductivity measurements along the working transects and in experimental parcels of 1 m2 where the cm scale spatial variability of the thermal conductivity was assessed. The application of a literature-based bulk thermal conductivity of 1.84 Wm-1 C-1 instead of field data that ranged from 0.62 to 2.19 Wm-1 C-1, produced a mean flux overestimation of 2.33 cm d-1 that, considering the low fluxes of the study area, represents an increase of 89 % and up to a factor of 3 in the most extreme cases. The changes in thermal conductivity can alter the estimated fluxes hindering the detection of patterns in groundwater discharge and modifying the interpretation of the results.

Uranium isotopes in tree bark as a spatial tracer of environmental contamination near former uranium processing facilities in southwest Ohio.

PubMed

Conte, Elise; Widom, Elisabeth; Kuentz, David

2017-11-01

Inappropriate handling of radioactive waste at nuclear facilities can introduce non-natural uranium (U) into the environment via the air or groundwater, leading to anthropogenic increases in U concentrations. Uranium isotopic analyses of natural materials (e.g. soil, plants or water) provide a means to distinguish between natural and anthropogenic U in areas near sources of radionuclides to the environment. This study examines the utility of two different tree bark transects for resolving the areal extent of U atmospheric contamination using several locations in southwest Ohio that historically processed U. This study is the first to utilize tree bark sampling transects to assess environmental contamination emanating from a nuclear facility. The former Fernald Feed Materials Production Center (FFMPC; Ross, Ohio) produced U metal from natural U ores and recycled nuclear materials from 1951 to 1989. Alba Craft Laboratory (Oxford, Ohio) machined several hundred tons of natural U metal from the FFMPC between 1952 and 1957. The Herring-Hall-Marvin Safe Company (HHM; Hamilton, Ohio) intermittently fabricated slugs rolled from natural U metal stock for use in nuclear reactors from 1943 to 1951. We have measured U concentrations and isotope signatures in tree bark sampled along an ∼35 km SSE-NNW transect from the former FFMPC to the vicinity of the former Alba Craft laboratories (transect #1) and an ∼20 km SW- NE (prevailing local wind direction) transect from the FFMPC to the vicinity of the former HHM (transect #2), with a focus on old trees with thick, persistent bark that could potentially record a time-integrated signature of environmental releases of U related to anthropogenic activity. Our results demonstrate the presence of anthropogenic U contamination in tree bark from the entire study area in both transects, with U concentrations within 1 km of the FFMPC up to ∼400 times local background levels of 0.066 ppm. Tree bark samples from the Alba Craft and HHM transects exhibit increasing U concentrations within ∼5 and ∼10 km, respectively of the FFMPC. The 236 U/ 238 U isotopic ratios in tree bark from both transects increase progressively towards the FFMPC with values as high as 2.00 × 10 -4  at the FFMPC. Tree bark sampled within 1 km of the FFMPC exhibits clear evidence for both enriched and depleted uranium with 235 U/ 238 U values from 0.00461 to 0.00736, with 234 U/ 238 U activity ratio ranging from 0.53 to 0.96, and 236 U/ 238 U from 6.05 × 10 -5 to 1.05 × 10 -4 . Tree bark from transect #1 between 1 and 30 km from the FFMPC exhibits depleted and natural 235 U/ 238 U values ranging from 0.00552 to 0.00726 [ 234 U/ 238 U activity ratio: 0.69-1.04; 236 U/ 238 U: 2.49 × 10 -6 - 2.00 × 10 -4 ]. Tree bark from transect #2 sampled between 1 and ∼20 km away from the FFMPC exhibits evidence of enriched and depleted U in the environment with 235 U/ 238 U ranging from 0.00635 to 0.00738 [ 234 U/ 238 U activity ratio: 0.83-0.98; 236 U/ 238 U: 1.43 × 10 -5 - 2.00 × 10 -4 ]. Results from scanning electron microscopy with energy dispersive spectrometry provides evidence for U-rich particles as the source of contamination found in tree bark growing within 1-3 km of the former FFMPC. Such observations are consistent with the previously observed 14 μm U-rich particle identified in tree bark sampled within 1 km of the FFMPC (Conte et al., 2015). Overall, this study shows the usefulness of a tree bark sample transect to assess the areal extent of atmospheric contaminant U stemming from nuclear facilities. Copyright © 2017 Elsevier Ltd. All rights reserved.

Pinch-off syndrome: transection of implantable central venous access device.

PubMed

Sugimoto, Takuya; Nagata, Hiroshi; Hayashi, Ken; Kano, Nobuyasu

2012-11-30

As the population of people with cancer increases so does the number of patients who take chemotherapy. Majority of them are administered parentally continuously. Implantable central venous catheter device is a good choice for those patients; however, severe complication would occur concerning the devices. Pinch-off syndrome is one of the most severe complications. The authors report a severe case of pinch-off syndrome. The patient with the implantable central venous device could not take chemotherapy because the device occluded. Further examination revealed the transection of the catheter. The transected fragment of the catheter in the heart was successfully removed by using a loop snare placed through the right femoral vein.

Development of a decision support system for monitoring, reporting and forecasting ecological conditions of the Appalachian Trail

USGS Publications Warehouse

Wang, Yeqiao; Nemani, Ramakrishna; Dieffenbach, Fred; Stolte, Kenneth; Holcomb, Glenn B.; Robinson, Matt; Reese, Casey C.; McNiff, Marcia; Duhaime, Roland; Tierney, Geri; Mitchell, Brian; August, Peter; Paton, Peter; LaBash, Charles

2010-01-01

This paper introduces a collaborative multi-agency effort to develop an Appalachian Trail (A.T.) MEGA-Transect Decision Support System (DSS) for monitoring, reporting and forecasting ecological conditions of the A.T. and the surrounding lands. The project is to improve decisionmaking on management of the A.T. by providing a coherent framework for data integration, status reporting and trend analysis. The A.T. MEGA-Transect DSS is to integrate NASA multi-platform sensor data and modeling through the Terrestrial Observation and Prediction System (TOPS) and in situ measurements from A.T. MEGA-Transect partners to address identified natural resource priorities and improve resource management decisions.

Magnetopause Transects

NASA Technical Reports Server (NTRS)

Sonnerup, B. U. O; Guo, M.

1996-01-01

A novel method is described for reconstruction of two-dimensional current-layer structures from measurements taken by a single spacecraft traversing the layer. In its present form, the method is applicable only to 2D magnetohydrostatic structures that are passively convected past the observing spacecraft. It is tested on a magnetopause crossing of the tangential-discontinuity type by the spacecraft AMPTE/IRM. The magnetic structures recovered include a magnetic island located between two X-type nulls as well as a magnetic 'worm hole' through which a bundle of weak magnetic flux appears to connect the magnetosphere and the magnetosheath.

Magnetopause transects

NASA Astrophysics Data System (ADS)

Sonnerup, B. U. Ö.; Guo, M.

A novel method is described for reconstruction of two-dimensional current-layer structures from measurements taken by a single spacecraft traversing the layer. In its present form, the method is applicable only to 2D magneto-hydrostatic structures that are passively convected past the observing spacecraft. It is tested on a magnetopause crossing of the tangential-discontinuity type by the spacecraft AMPTE/IRM. The magnetic structures recovered include a magnetic island located between two X-type nulls as well as a magnetic ‘worm hole’ through which a bundle of weak magnetic flux appears to connect the magnetosphere and the magnetosheath.

Small population size of Pribilof Rock Sandpipers confirmed through distance-sampling surveys in Alaska

USGS Publications Warehouse

Ruthrauff, Daniel R.; Tibbitts, T. Lee; Gill, Robert E.; Dementyev, Maksim N.; Handel, Colleen M.

2012-01-01

The Rock Sandpiper (Calidris ptilocnemis) is endemic to the Bering Sea region and unique among shorebirds in the North Pacific for wintering at high latitudes. The nominate subspecies, the Pribilof Rock Sandpiper (C. p. ptilocnemis), breeds on four isolated islands in the Bering Sea and appears to spend the winter primarily in Cook Inlet, Alaska. We used a stratified systematic sampling design and line-transect method to survey the entire breeding range of this population during springs 2001-2003. Densities were up to four times higher on the uninhabited and more northerly St. Matthew and Hall islands than on St. Paul and St. George islands, which both have small human settlements and introduced reindeer herds. Differences in density, however, appeared to be more related to differences in vegetation than to anthropogenic factors, raising some concern for prospective effects of climate change. We estimated the total population at 19 832 birds (95% CI 17 853–21 930), ranking it among the smallest of North American shorebird populations. To determine the vulnerability of C. p. ptilocnemis to anthropogenic and stochastic environmental threats, future studies should focus on determining the amount of gene flow among island subpopulations, the full extent of the subspecies' winter range, and the current trajectory of this small population.

Ecological carrying capacity assessment of diving site: A case study of Mabul Island, Malaysia.

PubMed

Zhang, Li-Ye; Chung, Shan-Shan; Qiu, Jian-Wen

2016-12-01

Despite considered a non-consumptive use of the marine environment, diving-related activities can cause damages to coral reefs. It is imminent to assess the maximum numbers of divers that can be accommodated by a diving site before it is subject to irreversible deterioration. This study aimed to assess the ecological carrying capacity of a diving site in Mabul Island, Malaysia. Photo-quadrat line transect method was used in the benthic survey. The ecological carrying capacity was assessed based on the relationship between the number of divers and the proportion of diver damaged hard corals in Mabul Island. The results indicated that the proportion of diver damaged hard corals occurred exponentially with increasing use. The ecological carrying capacity of Mabul Island is 15,600-16,800 divers per diving site per year at current levels of diver education and training with a quarterly threshold of 3900-4200 per site. Our calculation shows that management intervention (e.g. limiting diving) is justified at 8-14% of hard coral damage. In addition, the use of coral reef dominated diving sites should be managed according to their sensitivity to diver damage and the depth of the reefs. Copyright © 2016 Elsevier Ltd. All rights reserved.

Annual and seasonal temperature variance along an inter-tidal sediment transect in Yaquina bay, Oregon, 1999 - 2006

EPA Science Inventory

Sediment temperature was measured using submersible Onset TidbiT® recording thermistor thermometers at eelgrass (Zostera marina, Z. japonica) mid-rhizome root depth (~5 cm) at 6 stations on a transect from ~MLLW (mean lower low water) at the channel edge to near MHHW (mean higher...

ANNUAL CYCLE OF PERIPHYTON, ZOOPLANKTON, AND WATER QUALITY PARAMETERS ALONG A 5 STATION TRANSECT OF ESCAMBIA BAY, FL

EPA Science Inventory

Phytoplankton, zooplankton and water quality parameters were monitored monthly along a 5-station transect in Escambia Bay (Pensacola, FL) from fall 1999 to fall 2000. To provide insight into nutrient processing in Escambia Bay and effects of grazers on phytoplankton community st...

Effect of Hurricane Hugo on molluscan skeletal distributions,Salt River Bay, St. Croix, U.S. Virgin Islands

NASA Astrophysics Data System (ADS)

Miller, Arnold I.; Llewellyn, Ghislaine; Parsons, Karla M.; Cummins, Hays; Boardman, Mark R.; Greenstein, Benjamin J.; Jacobs, David K.

1992-01-01

Just prior to the passage of Hurricane Hugo over St. Croix, U.S. Virgin Islands, 35 molluscan skeletal samples were collected at 30 m intervals along a sampling transect in Salt River Bay, on the north-central coast. Three months after the hurricane, the transect was resampled to permit direct assessment of storm effects on skeletal distributions. Results indicate that spatial zonation of molluscan accumulations, associated with environmental transitions along the transect, was maintained in the wake of the hurricane. However, limited transport was diagnosed by comparing the compositions of prestorm and poststorm samples from the deepest, mud-rich subenvironment on the transect. In aggregate, the species richness of samples from the southern half of this zone increased from 16 to 40, and the abundance of species that were not among the characteristic molluscs of this subenvironment increased from 11% to 26%. These storm effects could probably not have been recognized, and attributed directly to Hugo, had there been no prestorm samples with which to compare directly the poststorm samples.

Accelerated recovery of sensorimotor function in a dog submitted to quasi-total transection of the cervical spinal cord and treated with PEG.

PubMed

Kim, C-Yoon; Hwang, In-Kyu; Kim, Hana; Jang, Se-Woong; Kim, Hong Seog; Lee, Won-Young

2016-01-01

A case report on observing the recovery of sensory-motor function after cervical spinal cord transection. Laminectomy and transection of cervical spinal cord (C5) was performed on a male beagle weighing 3.5 kg. After applying polyethylene glycol (PEG) on the severed part, reconstruction of cervical spinal cord was confirmed by the restoration of sensorimotor function. Tetraplegia was observed immediately after operation, however, the dog showed stable respiration and survival without any complication. The dog showed fast recovery after 1 week, and recovered approximately 90% of normal sensorimotor function 3 weeks after the operation, although urinary disorder was still present. All recovery stages were recorded by video camera twice a week for behavioral analysis. While current belief holds that functional recovery is impossible after a section greater than 50% at C5-6 in the canine model, this case study shows the possibility of cervical spinal cord reconstruction after near-total transection. Furthermore, this case study also confirms that PEG can truly expedite the recovery of sensorimotor function after cervical spinal cord sections in dogs.

Effect of cochlear nerve electrocautery on the adult cochlear nucleus.

PubMed

Iseli, Claire E; Merwin, William H; Klatt-Cromwell, Cristine; Hutson, Kendall A; Ewend, Matthew G; Adunka, Oliver F; Fitzpatrick, Douglas C; Buchman, Craig A

2015-04-01

Electrocauterization and subsequent transection of the cochlear nerve induce greater injury to the cochlear nucleus than sharp transection alone. Some studies show that neurofibromatosis Type 2 (NF2) patients fit with auditory brainstem implants (ABIs) fail to achieve speech perception abilities similar to ABI recipients without NF2. Reasons for these differences remain speculative. One hypothesis posits poorer performance to surgically induced trauma to the cochlear nucleus from electrocautery. Sustained electrosurgical depolarization of the cochlear nerve may cause excitotoxic-induced postsynaptic nuclear injury. Equally plausible is that cautery in the vicinity of the cochlear nucleus induces necrosis. The cochlear nerve was transected in anesthetized adult gerbils sharply with or without bipolar electrocautery at varying intensities. Gerbils were perfused at 1, 3, 5, and 7 days postoperatively; their brainstem and cochleas were embedded in paraffin and sectioned at 10 μm. Alternate sections were stained with flourescent markers for neuronal injury or Nissl substance. In additional experiments, anterograde tracers were applied directly to a sectioned eighth nerve to verify that fluorescent-labeled profiles seen were terminating auditory nerve fibers. Cochlear nerve injury was observed from 72 hours postoperatively and was identical across cases regardless of surgical technique. Postsynaptic cochlear nucleus injury was not seen after distal transection of the nerve. By contrast, proximal transection was associated with trauma to the cochlear nucleus. Distal application of bipolar electrocautery seems safe for the cochlear nucleus. Application near the root entry zone must be used cautiously because this may compromise nuclear viability needed to support ABI stimulation.

Circumferential graben and the structural evolution of Alba Mons, Mars

NASA Astrophysics Data System (ADS)

Öhman, Teemu; McGovern, Patrick J.

2014-05-01

Alba Mons is a unique, very extensive but shallow volcanotectonic construct in northern Tharsis, Mars. Numerous models have been presented to explain the formation of Alba Mons and its most characteristic feature, a wristwatch-like pattern of radial and circumferential graben. We used a wide selection of topographic datasets to characterize the fault throw variation on nine topographic transects across the circumferential graben in order to provide observational constraints for the different formation models, and to gain further insight into the evolution of Alba Mons. In most of the transects, summed throws from outwards-facing (away from the center of the volcano) faults are larger than from the inwards-facing (towards the center) ones. Only the very gently sloping western transects show the opposite, emphasizing the east-west-asymmetry of Alba Mons. 10-40% of the observed topographic relief of Alba Mons along the nine transects can be accounted for by this throw difference between the inwards- and outwards-facing faults. These results are consistent with predictions of models suggesting an uplift mechanism to explain the formation of the circumferential graben, but not with models invoking central subsidence. Horizontal extensional strain along the transects varies between 0.5% and 2%, consistent with strain predictions of the late-stage sill complex inflation model of McGovern et al. (McGovern, P.J., Solomon, S.C., Head J.W. III, Smith, D.E., Zuber M.T., Neumann, G.A. [2001]. J. Geophys. Res. 106(E10), 23769-23809).

Recreational water quality response to a filtering barrier at a Great Lakes beach

USGS Publications Warehouse

Przybyla-Kelly, Kasia; Nevers, Meredith; Breitenbach, Cathy; Whitman, Richard L.

2013-01-01

Recent research has sought to determine the off- or onshore origin of fecal indicator bacteria (FIB) in order to improve local recreational water quality. In an effort to reduce offshore contamination, a filtering barrier (FB) was installed at Calumet Beach, Lake Michigan, Chicago, IL. A horseshoe-shaped curtain (146 m long, 0.18 mm apparent opening size, 1.5–1.6 m deepest point) was designed to exclude FIB containing or promoting debris and thus reduce the number of swimming advisories during the examination period of July through September 2012. Mean water Escherichia coli concentrations were significantly lower at southern transects (S; outside FB) than at transects within the FB (WN) and at northern transects (N; outside FB) (1.45 log (MPN)/100 ml vs. 1.74 and 1.72, respectively, p < 0.05, n = 234). Turbidity was significantly higher at the WN transects (p < 0.001, n = 233), but it tended to increase throughout the sampling season within and outside the FB. E. coli in adjacent foreshore sand was significantly lower at the WN transects. A combination of factors might explain higher E. coli and turbidity within the FB including increased sediment resuspension, trapped algae, shallowing within the FB, and large lake hydrodynamic processes. This remediation approach may find better use in a different hydrodynamic setting, but the results of this experiment provide insight on sources of contamination and nearshore dynamics that may direct future beach management strategies.

Are temperate mature forests buffered from invasive lianas?

USGS Publications Warehouse

Pavlovic, Noel B.; Leicht-Young, Stacey A.

2011-01-01

Mature and old-growth forests are often thought to be buffered against invasive species due to low levels of light and infrequent disturbance. Lianas (woody vines) and other climbing plants are also known to exhibit lower densities in older forests. As part of a larger survey of the lianas of the southern Lake Michigan region in mature and old-growth forests, the level of infestation by invasive lianas was evaluated. The only invasive liana detected in these surveys was Celastrus orbiculatus Thunb. (Celastraceae). Although this species had only attached to trees and reached the canopy in a few instances, it was present in 30% of transects surveyed, mostly as a component of the ground layer. Transects with C. orbiculatus had higher levels of soil potassium and higher liana richness than transects without. In contrast, transects with the native C. scandens had higher pH, sand content, and soil magnesium and lower organic matter compared to transects where it was absent. Celastrus orbiculatus appears to be a generalist liana since it often occurs with native lianas. Celastrus orbiculatus poses a substantial threat to mature forests as it will persist in the understory until a canopy gap or other disturbance provides the light and supports necessary for it to ascend to the canopy and damage tree species. As a result, these forests should be monitored by land managers so that C. orbiculatus eradication can occur while invasions are at low densities and restricted to the ground layer.