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Sample records for linker-assisted filament aggregation

  1. Expression of Cardamom mosaic virus coat protein in Escherichia coli and its assembly into filamentous aggregates.

    PubMed

    Jacob, Thomas; Usha, R

    2002-06-01

    Cardamom mosaic virus (CdMV), a member of the genus Macluravirus of Potyviridae, causes a mosaic disease in cardamom. A polyclonal antiserum was raised against the purified virus and IgG was prepared. Electron microscopic studies on the purified virus showed flexuous filamentous particles of approximately 800 nm in length, typical of members of Potyviridae. The coat protein (CP) encoding sequence of the virus was expressed in Escherichia coli and the protein purified by affinity chromatography under denaturing conditions. The viral nature of the expressed CP was confirmed by positive reaction with anti CdMV IgG in a Western blot. The expressed CP aggregated irreversibly upon renaturation at concentrations above 0.07 mg/ml. The expression of the CP led to the formation of filamentous aggregates in E. coli as observed by immuno-gold electron microscopy. The filamentous aggregates were of 100-150 nm in length. Immuno-capture RT-PCR confirmed the absence of coat protein mRNA in the filamentous aggregates. Deletion mutations, which were expected to inhibit virus assembly, were introduced in the core region of the coat protein. However, these mutations did not improve the solubility of the CP in non-denaturing buffers.

  2. The natively unfolded character of tau and its aggregation to Alzheimer-like paired helical filaments.

    PubMed

    Jeganathan, Sadasivam; von Bergen, Martin; Mandelkow, Eva-Maria; Mandelkow, Eckhard

    2008-10-01

    The abnormal aggregation of the microtubule-associated protein Tau into paired helical filaments (PHFs) is one of the hallmarks of Alzheimer disease (AD). Tau in solution behaves as a natively unfolded or intrinsically disordered protein while its aggregation is based on the partial structural transition from random coil to beta-structure. Our aim is to understand in more detail the unfolded nature of Tau, to investigate the aggregation of Tau under different conditions and the molecular interactions of Tau in filaments. We show that soluble Tau remains natively unfolded even when its net charge is minimized, in contrast to other unfolded proteins. The CD signature of the random-coil character of Tau shows no major change over wide variations in charge (pH), ionic strength, solvent polarity, and denaturation. Thus there is no indication of a hydrophobicity-driven collapse, neither in the microtubule-binding repeat domain constructs nor in full-length Tau. This argues that the lack of hydrophobic residues but not the net charge accounts for unfolded nature of soluble Tau. The aggregation of the Tau repeat domain (that forms the core of PHFs) in the presence of nucleating polyanionic cofactors (heparin) is efficient in a range of buffers and pH values between approximately 5 and 10 but breaks down beyond that range, presumably because the pattern of charged interactions disappears. Similarly, elevated ionic strength attenuates aggregation, and the temperature dependence is bell-shaped with an optimum around 50 degrees C. Reporter dyes ThS and ANS record the aggregation process but sense different states (cross-beta-structure vs hydrophobic pockets) with different kinetics. Preformed PHFs are surprisingly labile and can be disrupted by denaturants at rather low concentration ( approximately 1.0 M GdnHCl), much less than required to denature globular proteins. Partial disaggregation of Tau filaments at extreme pH values monitored by CD and EM indicate the importance of

  3. Metal ion-induced lateral aggregation of filamentous viruses fd and M13.

    PubMed Central

    Tang, Jay X; Janmey, Paul A; Lyubartsev, Alexander; Nordenskiöld, Lars

    2002-01-01

    We report a detailed comparison between calculations of inter-filament interactions based on Monte-Carlo simulations and experimental features of lateral aggregation of bacteriophages fd and M13 induced by a number of divalent metal ions. The general findings are consistent with the polyelectrolyte nature of the virus filaments and confirm that the solution electrostatics account for most of the experimental features observed. One particularly interesting discovery is resolubilization for bundles of either fd or M13 viruses when the concentration of the bundle-inducing metal ion Mg(2+) or Ca(2+) is increased to large (>100 mM) values. In the range of Mg(2+) or Ca(2+) concentrations where large bundles of the virus filaments are formed, the optimal attractive interaction energy between the virus filaments is estimated to be on the order of 0.01 kT per net charge on the virus surface when a recent analytical prediction to the experimentally defined conditions of resolubilization is applied. We also observed qualitatively distinct behavior between the alkali-earth metal ions and the divalent transition metal ions in their action on the charged viruses. The understanding of metal ions-induced reversible aggregation based on solution electrostatics may lead to potential applications in molecular biology and medicine. PMID:12080143

  4. Expression of organophosphorus-degradation gene ( opd) in aggregating and non-aggregating filamentous nitrogen-fixing cyanobacteria

    NASA Astrophysics Data System (ADS)

    Li, Qiong; Tang, Qing; Xu, Xudong; Gao, Hong

    2010-11-01

    Genetic engineering in filamentous N2-fixing cyanobacteria usually involves Anabaena sp. PCC 7120 and several other non-aggregating species. Mass culture and harvest of such species are more energy consuming relative to aggregating species. To establish a gene transfer system for aggregating species, we tested many species of Anabaena and Nostoc, and identified Nostoc muscorum FACHB244 as a species that can be genetically manipulated using the conjugative gene transfer system. To promote biodegradation of organophosphorus pollutants in aquatic environments, we introduced a plasmid containing the organophosphorus-degradation gene ( opd) into Anabaena sp. PCC 7120 and Nostoc muscorum FACHB244 by conjugation. The opd gene was driven by a strong promoter, P psbA . From both species, we obtained transgenic strains having organophosphorus-degradation activities. At 25°C, the whole-cell activities of the transgenic Anabaena and Nostoc strains were 0.163±0.001 and 0.289±0.042 unit/μg Chl a, respectively. However, most colonies resulting from the gene transfer showed no activity. PCR and DNA sequencing revealed deletions or rearrangements in the plasmid in some of the colonies. Expression of the green fluorescent protein gene from the same promoter in Anabaena sp. PCC 7120 showed similar results. These results suggest that there is the potential to promote the degradation of organophosphorus pollutants with transgenic cyanobacteria and that selection of high-expression transgenic colonies is important for genetic engineering of Anabaena and Nostoc species. For the first time, we established a gene transfer and expression system in an aggregating filamentous N2-fixing cyanobacterium. The genetic manipulation system of Nostoc muscorum FACHB244 could be utilized in the elimination of pollutants and large-scale production of valuable proteins or metabolites.

  5. Linker-assisted immunoassay and liquid chromatography/mass spectrometry for the analysis of glyphosate.

    PubMed

    Lee, E A; Zimmerman, L R; Bhullar, B S; Thurman, E M

    2002-10-01

    A novel, sensitive, linker-assisted enzyme-linked immunosorbent assay (L'ELISA) was compared to on-line solid-phase extraction (SPE) with high-performance liquid chromatography/mass spectrometry (HPLC/MS) for the analysis of glyphosate in surface water and groundwater samples. The L'ELISA used succinic anhydride to derivatize glyphosate, which mimics the epitotic attachment of glyphosate to horseradish peroxidase hapten. Thus, L'ELISA recognized the derivatized glyphosate more effectively (detection limit of 0.1 microg/L) and with increased sensitivity (10-100 times) over conventional ELISA and showed the potential for other applications. The precision and accuracy of L'ELISA then was compared with on-line SPE/HPLC/MS, which detected glyphosate and its degradate derivatized with 9-fluorenylmethyl chloroformate using negative-ion electrospray (detection limit 0.1 microg/ L, relative standard deviation +/- 15%). Derivatization efficiency and matrix effects were minimized by adding an isotope-labeled glyphosate (2-13C15N). The accuracy of L'EUSA gave a false positive rate of 18% between 0.1 and 1.0 microg/L and a false positive rate of only 1% above 1.0 microg/L The relative standard deviation was +/- 20%. The correlation of L'ELISA and HPLC/MS for 66 surface water and groundwater samples was 0.97 with a slope of 1.28, with many detections of glyphosate and its degradate in surface water but not in groundwater.

  6. Linker-assisted immunoassay and liquid chromatography/mass spectrometry for the analysis of glyphosate

    USGS Publications Warehouse

    Lee, E.A.; Zimmerman, L.R.; Bhullar, B.S.; Thurman, E.M.

    2002-01-01

    A novel, sensitive, linker-assisted enzyme-linked immunosorbent assay (L'ELISA) was compared to on-line solidphase extraction (SPE) with high-performance liquid chromatography/mass spectrometry (HPLC/MS) for the analysis of glyphosate in surface water and groundwater samples. The L'ELISA used succinic anhydride to derivatize glyphosate, which mimics the epitotic attachment of glyphosate to horseradish peroxidase hapten. Thus, L'ELISA recognized the derivatized glyphosate more effectively (detection limit of 0.1 ??g/L) and with increased sensitivity (10-100 times) over conventional ELISA and showed the potential for other applications. The precision and accuracy of L'ELISA then was compared with on-line SPE/HPLC/MS, which detected glyphosate and its degradate derivatized with 9-fluorenylmethyl chloroformate using negative-ion electrospray (detection limit 0.1 ??g/L, relative standard deviation ??15%). Derivatization efficiency and matrix effects were minimized by adding an isotope-labeled glyphosate (2-13C15N). The accuracy of L'ELISA gave a false positive rate of 18% between 0.1 and 1.0 ??g/L and a false positive rate of only 1% above 1.0 ??g/L. The relative standard deviation was ??20%. The correlation of L'ELISA and HPLC/MS for 66 surface water and groundwater samples was 0.97 with a slope of 1.28, with many detections of glyphosate and its degradate in surface water but not in groundwater.

  7. HesF, an exoprotein required for filament adhesion and aggregation in Anabaena sp. PCC 7120.

    PubMed

    Oliveira, Paulo; Pinto, Filipe; Pacheco, Catarina C; Mota, Rita; Tamagnini, Paula

    2015-05-01

    Here, we report on the identification and characterization of a protein (Alr0267) named HesF, found in the extracellular milieu of Anabaena sp. PCC 7120 grown diazotrophically. hesF was found to be highly upregulated upon transition from non-nitrogen-fixing to nitrogen-fixing conditions, and the highest transcript levels were detected towards the end of the heterocyst differentiation process. The hesF promoter drives transcription of the gene in heterocysts only, and both NtcA and HetR are essential for the gene's in vivo activation. An examination of HesF's translocation showed that the secretion system is neither heterocyst-specific nor dependent on nitrogen-fixing conditions. Furthermore, HesF was found to be a type I secretion system substrate, since an HgdD mutant failed to secrete HesF. Several analyses revealed that a HesF minus mutant strain lacks the heterocyst-specific polysaccharide fibrous layer, accumulates high amounts of polysaccharides in the medium and that HesF is essential for the typical aggregation phenotype in diazotrophic conditions. Thus, we propose that HesF is a carbohydrate-binding exoprotein that plays a role in maintaining the heterocyst cell wall structure. A combination of and possibly interaction between HesF and heterocyst-specific polysaccharides seems to be responsible for filament adhesion and culture aggregation in heterocyst-forming cyanobacteria.

  8. HesF, an exoprotein required for filament adhesion and aggregation in Anabaena sp. PCC 7120.

    PubMed

    Oliveira, Paulo; Pinto, Filipe; Pacheco, Catarina C; Mota, Rita; Tamagnini, Paula

    2015-05-01

    Here, we report on the identification and characterization of a protein (Alr0267) named HesF, found in the extracellular milieu of Anabaena sp. PCC 7120 grown diazotrophically. hesF was found to be highly upregulated upon transition from non-nitrogen-fixing to nitrogen-fixing conditions, and the highest transcript levels were detected towards the end of the heterocyst differentiation process. The hesF promoter drives transcription of the gene in heterocysts only, and both NtcA and HetR are essential for the gene's in vivo activation. An examination of HesF's translocation showed that the secretion system is neither heterocyst-specific nor dependent on nitrogen-fixing conditions. Furthermore, HesF was found to be a type I secretion system substrate, since an HgdD mutant failed to secrete HesF. Several analyses revealed that a HesF minus mutant strain lacks the heterocyst-specific polysaccharide fibrous layer, accumulates high amounts of polysaccharides in the medium and that HesF is essential for the typical aggregation phenotype in diazotrophic conditions. Thus, we propose that HesF is a carbohydrate-binding exoprotein that plays a role in maintaining the heterocyst cell wall structure. A combination of and possibly interaction between HesF and heterocyst-specific polysaccharides seems to be responsible for filament adhesion and culture aggregation in heterocyst-forming cyanobacteria. PMID:25142951

  9. Mutations of tau protein in frontotemporal dementia promote aggregation of paired helical filaments by enhancing local beta-structure.

    PubMed

    von Bergen, M; Barghorn, S; Li, L; Marx, A; Biernat, J; Mandelkow, E M; Mandelkow, E

    2001-12-21

    The microtubule-associated protein tau is a natively unfolded protein in solution, yet it is able to polymerize into the ordered paired helical filaments (PHF) of Alzheimer's disease. In the splice isoforms lacking exon 10, this process is facilitated by the formation of beta-structure around the hexapeptide motif PHF6 ((306)VQIVYK(311)) encoded by exon 11. We have investigated the structural requirements for PHF polymerization in the context of adult tau isoforms containing four repeats (including exon 10). In addition to the PHF6 motif there exists a related PHF6* motif ((275)VQIINK(280)) in the repeat encoded by the alternatively spliced exon 10. We show that this PHF6* motif also promotes aggregation by the formation of beta-structure and that there is a cross-talk between the two hexapeptide motifs during PHF aggregation. We also show that two of the tau mutations found in hereditary frontotemporal dementias, DeltaK280 and P301L, have a much stronger tendency for PHF aggregation which correlates with their high propensity for beta-structure around the hexapeptide motifs.

  10. Xenotime-hematite aggregates on opaline filaments: evidence for biomineralization in weathered siliciclastic rocks, Capanema, Quadrilátero Ferrífero of Minas Gerais, Brazil

    NASA Astrophysics Data System (ADS)

    Cabral, Alexandre Raphael; Koglin, Nikola; Seabra Gomes, Antônio Augusto; Lehmann, Bernd

    2012-01-01

    Dissolution cavities in weathered pebbly quartzite of the ~2.5-Ga Moeda Formation at Capanema, Quadrilátero Ferrífero of Minas Gerais, Brazil, are decorated with suspended filaments of opaline silica. The filaments sustain xenotime-hematite aggregates in the open space. Xenotime occurs as inclusions in buds and botryoidal aggregates of hematite. The filamentous structures consist of strand-forming buds, hypha-like extensions, and thin strands that compose mat-like arrangements. They resemble microbial filaments that were replaced by opaline silica and fossilized. The occurrence of spherical hematite as protuberances on hematite-free opaline hyphae is interpreted as accretion of dissolved iron onto extracellular polymers. Phosphate sites in polymeric substances expelled from the microbial filaments might have adsorbed yttrium and heavy rare-earth elements from groundwater to the iron-accreting polymers. These would have resulted in botryoidal aggregates of hematite with xenotime inclusions. The presence of authigenic xenotime in the weathering zone opens a new possibility to constrain the evolution of lateritic profiles by xenotime geochronology.

  11. Aqueous-phase linker-assisted attachment of cysteinate(2-)-capped cdse quantum dots to TiO2 for quantum dot-sensitized solar cells.

    PubMed

    Coughlin, Kathleen M; Nevins, Jeremy S; Watson, David F

    2013-09-11

    We have synthesized water-dispersible cysteinate(2-)-capped CdSe nanocrystals and attached them to TiO2 using one-step linker-assisted assembly. Room-temperature syntheses yielded CdSe magic-sized clusters (MSCs) exhibiting a narrow and intense first excitonic absorption band centered at 422 nm. Syntheses at 80 °C yielded regular CdSe quantum dots (RQDs) with broader and red-shifted first excitonic absorption bands. Cysteinate(2-)-capped CdSe MSCs and RQDs adsorbed to bare nanocrystalline TiO2 films from aqueous dispersions. CdSe-functionalized TiO2 films were incorporated into working electrodes of quantum dot-sensitized solar cells (QDSSCs). Short-circuit photocurrent action spectra of QDSSCs corresponded closely to absorptance spectra of CdSe-functionalized TiO2 films. Power-conversion efficiencies were (0.43±0.04)% for MSC-functionalized TiO2 and (0.83±0.11)% for RQD-functionalized TiO2. Absorbed photon-to-current efficiencies under white-light illumination were approximately 0.3 for both MSC- and RQD-based QDSSCs, despite the significant differences in the electronic properties of MSCs and RQDs. Cysteinate(2-) is an attractive capping group and ligand, as it engenders water-dispersibility of CdSe nanocrystals with a range of photophysical properties, enables facile all-aqueous linker-assisted attachment of nanocrystals to TiO2, and promotes efficient interfacial charge transfer.

  12. Aminoalkanoic Acids as Alternatives to Mercaptoalkanoic Acids for the Linker-Assisted Attachment of Quantum Dots to TiO2.

    PubMed

    Rivera-González, Natalia; Chauhan, Saurabh; Watson, David F

    2016-09-13

    Linear aminoalkanoic acids (AAAs) and mercaptoalkanoic acids (MAAs) were characterized as bifunctional ligands to tether CdSe QDs to nanocrystalline TiO2 thin films and to mediate excited-state electron transfer (ET) from the QDs to TiO2 nanoparticles. The adsorption of 12-aminododecanoic acid (ADA) and 12-mercaptododecanoic acid (ADA) to TiO2 followed the Langmuir adsorption isotherm. Surface adduct formation constants (Kad) were ∼10(4) M(-1); saturation amounts of the ligands per projected surface area of TiO2 (Γ0) were ∼10(-7) mol cm(-2). Both Kad and Γ0 differed by 20% or less for the two linkers. CdSe QDs adhered to ADA- and MDA-functionalized TiO2 films; data were well modeled by the Langmuir adsorption isotherm and Langmuir kinetics. For ADA- and MDA-mediated assembly values of Kad were (1.8 ± 0.4) × 10(6) and (2.4 ± 0.4) × 10(6) M(-1), values of Γ0 were (1.6 ± 0.3) × 10(-9) and (1.2 ± 0.1) × 10(-9) mol cm(-2), and rate constants were (14 ± 5) and (60 ± 20) M(-1) s(-1), respectively. Thus, the thermodynamics and kinetics of linker-assisted assembly were slightly more favorable for MDA than for ADA. Steady-state and time-resolved emission spectroscopy revealed that electrons were transferred from both band-edge and surface states of CdSe QDs to TiO2 with rate constants (ket) of ∼10(7) s(-1). ET was approximately twice as fast through thiol-bearing linker 4-mercaptobutyric acid (MBA) as through amine-bearing linker 4-aminobutyric acid (ABA). Photoexcited QDs transferred holes to adsorbed MBA. In contrast, ABA did not scavenge photogenerated holes from CdSe QDs, which maximized the separation of charges following ET. Additionally, ABA shifted electron-trapping surface states to higher energies, minimizing the loss of potential energy of electrons prior to ET. These trade-offs involving the kinetics and thermodynamics of linker-assisted assembly; the driving force, rate constant, and efficiency of ET; and the extent of photoinduced charge

  13. Chaperonin filaments: The archael cytoskeleton

    SciTech Connect

    Trent, J.D.; Kagawa, H.K.; Yaoi, Takuro; Olle, E.; Zaluzec, N.J.

    1997-08-01

    Chaperonins are multi-subunit double-ring complexed composed of 60-kDa proteins that are believed to mediate protein folding in vivo. The chaperonins in the hyperthermophilic archaeon Sulfolobus shibatae are composed of the organism`s two most abundant proteins, which represent 4% of its total protein and have an intracellular concentration of {ge} 3.0 mg/ml. At concentrations of 1.0 mg/ml, purified chaperonin proteins aggregate to form ordered filaments. Filament formation, which requires Mg{sup ++} and nucleotide binding (not hydrolysis), occurs at physiological temperatures under conditions suggesting filaments may exist in vivo. If the estimated 4,600 chaperonins per cell, formed filaments in vivo, they could create a matrix of filaments that would span the diameter of an average S. shibatae cell 100 times. Direct observations of unfixed, minimally treated cells by intermediate voltage electron microscopy (300 kV) revealed an intracellular network of filaments that resembles chaperonin filaments produced in vitro. The hypothesis that the intracellular network contains chaperonins is supported by immunogold analyses. The authors propose that chaperonin activity may be regulated in vivo by filament formation and that chaperonin filaments may serve a cytoskeleton-like function in archaea and perhaps in other prokaryotes.

  14. Dynamics of in vitro intermediate filament length distributions.

    PubMed

    Portet, Stéphanie

    2013-09-01

    An aggregation model with explicit expression of association rate constants is considered to study in vitro type III intermediate filament length distribution dynamics. Different assumptions on the properties of filaments and probability of aggregation are considered, leading to four models. Fitting of model responses to experimental data leads to the identification of the most appropriate model to represent each time point of the assembly. A combination of models allows the construction of a mixed model that represents well the complete assembly dynamics: it is found that the rate constants decrease with respect to filament size when the aggregation involves at least one short filament, whereas for longer filaments they are almost independent of size. The flexible nature of filaments is thus important in the assembly of intermediate filaments.

  15. [Morphogenesis in a community of filamentous cyanobacteria].

    PubMed

    Sumina, E L; Sumin, D L

    2013-01-01

    Reversible differentiation was experimentally discovered in a community of modern filamentous cyanobacteria Oscillatoria terebriformis. Splitting of the initially uniform community into differentiated parts (strands, multiradiate aggregates, networks, etc.) occurs only for the duration of a function facilitating the activity of this community as an integral unit. The structures are formed as a result of regrouping of the filaments, without their specialization. A morphologically regulatory system (polygonal network) was found to develop under the impact of extreme factors. The levels of structural organization of filamentous cyanobacteria and multicellular eukaryotes were compared (individual cells in a filament--cell organelles; filaments--individual cells; community--organism), and the similarities and differences in morphogenesis of these groups were analyzed using the data on the embryonic regulation in multicellular eukaryotes. Spatial information in morphogenesis was shown to result not from direct realization of an inherited program but is created by the elements of integral organisms (cells and filaments) in the course of development.

  16. Filament winding

    NASA Astrophysics Data System (ADS)

    Shibley, A. M.

    The major aspects of filament winding are discussed, emphasizing basic reinforcement and matrix materials, winding procedures, process controls, and cured composite properties. Fiberglass (E-glass and S-glass strengths are 500,000 and 665,000 psi respectively) and polyester resins are the principal reinforcement constituent materials. Graphite and aramid reinforcements are being used more frequently, primarily for the more critical pressure vessels. Matrix systems are most commonly based on epoxy as it has superior mechanical properties, fatigue behavior, and heat resistance as compard with polyesters. A fiberglass overwrap of PVC pipe is an anticipated development in on-site winding and combination winding, and the compression molding of filament wound lay-ups will be investigated. The fabrication of weight-sensitive structural components may be achieved by using such moldings.

  17. Intermediate Filament Diseases: Desminopathy

    PubMed Central

    Goldfarb, Lev G.; Olivé, Montse; Vicart, Patrick; Goebel, Hans H.

    2009-01-01

    Desminopathy is one of the most common intermediate filament human disorders associated with mutations in closely interacting proteins, desmin and alphaB-crystallin. The inheritance pattern in familial desminopathy is characterized as autosomal dominant or autosomal recessive, but many cases have no family history. At least some and likely most sporadic desminopathy cases are associated with de novo DES mutations. The age of disease onset and rate of progression may vary depending on the type of inheritance and location of the causative mutation. Typically, the illness presents with lower and later upper limb muscle weakness slowly spreading to involve truncal, neck-flexor, facial and bulbar muscles. Skeletal myopathy is often combined with cardiomyopathy manifested by conduction blocks, arrhythmias and chronic heart failure resulting in premature sudden death. Respiratory muscle weakness is a major complication in some patients. Sections of the affected skeletal and cardiac muscles show abnormal fibre areas containing chimeric aggregates consisting of desmin and other cytoskeletal proteins. Various DES gene mutations: point mutations, an insertion, small in-frame deletions and a larger exon-skipping deletion, have been identified in desminopathy patients. The majority of these mutations are located in conserved alpha-helical segments, but additional mutations have recently been identified in the tail domain. Filament and network assembly studies indicate that most but not all disease-causing mutations make desmin assembly-incompetent and able to disrupt a pre-existing filamentous network in dominant-negative fashion. AlphaB-crystallin serves as a chaperone for desmin preventing its aggregation under various forms of stress; mutant CRYAB causes cardiac and skeletal myopathies identical to those resulting from DES mutations. PMID:19181099

  18. Cytoplasmic filaments of Amoeba proteus. I. The role of filaments in consistency changes and movement.

    PubMed

    Pollard, T D; Ito, S

    1970-08-01

    The role of filaments in consistency changes and movement in a motile cytoplasmic extract of Amoeba proteus was investigated by correlating light and electron microscopic observations with viscosity measurements. The extract is prepared by the method of Thompson and Wolpert (1963). At 0 degrees C, this extract is nonmotile and similar in structure to ameba cytoplasm, consisting of groundplasm, vesicles, mitochondria, and a few 160 A filaments. The extract undergoes striking ATP-stimulated streaming when warmed to 22 degrees C. Two phases of movement are distinguished. During the first phase, the apparent viscosity usually increases and numerous 50-70 A filaments appear in samples of the extract prepared for electron microscopy, suggesting that the increase in viscosity in caused, at least in part, by the formation of these thin filaments. During this initial phase of ATP-stimulated movement, these thin filaments are not detectable by phase-contrast or polarization microscopy, but later, in the second phase of movement, 70 A filaments aggregate to form birefringent microscopic fibrils. A preparation of pure groundplasm with no 160 A filaments or membranous organelles exhibits little or no ATP-stimulated movement, but 50-70 A filaments form and aggregate into birefringent fibrils. This observation and the structural relationship of the 70 A and the 160 A filaments in the motile extract suggest that both types of filaments may be required for movement. These two types of filaments, 50-70 A and 160 A, are also present in the cytoplasm of intact amebas. Fixed cells could not be used to study the distribution of these filaments during natural ameboid movement because of difficulties in preserving the normal structure of the ameba during preparation for electron microscopy.

  19. Triggering filamentation using turbulence

    NASA Astrophysics Data System (ADS)

    Eeltink, D.; Berti, N.; Marchiando, N.; Hermelin, S.; Gateau, J.; Brunetti, M.; Wolf, J. P.; Kasparian, J.

    2016-09-01

    We study the triggering of single filaments due to turbulence in the beam path for a laser of power below the filamenting threshold. Turbulence can act as a switch between the beam not filamenting and producing single filaments. This positive effect of turbulence on the filament probability, combined with our observation of off-axis filaments, suggests the underlying mechanism is modulation instability caused by transverse perturbations. We hereby experimentally explore the interaction of modulation instability and turbulence, commonly associated with multiple filaments, in the single-filament regime.

  20. Filamentous bacteria existence in aerobic granular reactors.

    PubMed

    Figueroa, M; Val del Río, A; Campos, J L; Méndez, R; Mosquera-Corral, A

    2015-05-01

    Filamentous bacteria are associated to biomass settling problems in wastewater treatment plants. In systems based on aerobic granular biomass they have been proposed to contribute to the initial biomass aggregation process. However, their development on mature aerobic granular systems has not been sufficiently studied. In the present research work, filamentous bacteria were studied for the first time after long-term operation (up to 300 days) of aerobic granular systems. Chloroflexi and Sphaerotilus natans have been observed in a reactor fed with synthetic wastewater. These filamentous bacteria could only come from the inoculated sludge. Thiothrix and Chloroflexi bacteria were observed in aerobic granular biomass treating wastewater from a fish canning industry. Meganema perideroedes was detected in a reactor treating wastewater from a plant processing marine products. As a conclusion, the source of filamentous bacteria in these mature aerobic granular systems fed with industrial effluents was the incoming wastewater.

  1. Formation of magnetic filaments: A kinetic study

    NASA Astrophysics Data System (ADS)

    Martínez-Pedrero, F.; Tirado-Miranda, M.; Schmitt, A.; Callejas-Fernández, J.

    2007-07-01

    In order to form magnetic filaments or chains, aqueous suspensions of superparamagnetic colloidal particles were aggregated under the action of an external magnetic field in the presence of different amounts of an indifferent 1:1 electrolyte (KBr). This allowed the influence of the anisotropic magnetic and isotropic electrostatic interactions on the aggregation behavior of these electric double-layered magnetic particles to be studied. Dynamic light scattering was used for monitoring the average diffusion coefficient of the magnetic filaments formed. Hydrodynamic equations were employed for obtaining the average chain lengths from the experimental mean diffusion coefficients. The results show that, for the same exposure time to the magnetic field, the average filament size is monotonously related to the amount of electrolyte added. The chain growth behavior was found to follow a power law with a similar exponent for all electrolyte concentrations used in this work. The time evolution of the average filament size can be rescaled such that all the curves collapse on a single master curve. Since the electrolyte added does not have any effect on the scaling behavior, the mechanism of aggregation seems to be completely controlled by the dipolar interaction. However, electrolyte addition not only controls the range of the total interaction between the particles, but also enhances the growth rate of the aggregation process. Taking into account the anisotropic character of these aggregation processes we propose a kernel that depends explicitly on the range of the dipolar interaction. The corresponding solutions of the Smoluchowski equation combined with theoretical models for the diffusion and light scattering by rigid rods reproduce the measured time evolution of the average perpendicular aggregate diffusion coefficient quite satisfactorily.

  2. Formation of magnetic filaments: a kinetic study.

    PubMed

    Martínez-Pedrero, F; Tirado-Miranda, M; Schmitt, A; Callejas-Fernández, J

    2007-07-01

    In order to form magnetic filaments or chains, aqueous suspensions of superparamagnetic colloidal particles were aggregated under the action of an external magnetic field in the presence of different amounts of an indifferent 1:1 electrolyte (KBr). This allowed the influence of the anisotropic magnetic and isotropic electrostatic interactions on the aggregation behavior of these electric double-layered magnetic particles to be studied. Dynamic light scattering was used for monitoring the average diffusion coefficient of the magnetic filaments formed. Hydrodynamic equations were employed for obtaining the average chain lengths from the experimental mean diffusion coefficients. The results show that, for the same exposure time to the magnetic field, the average filament size is monotonously related to the amount of electrolyte added. The chain growth behavior was found to follow a power law with a similar exponent for all electrolyte concentrations used in this work. The time evolution of the average filament size can be rescaled such that all the curves collapse on a single master curve. Since the electrolyte added does not have any effect on the scaling behavior, the mechanism of aggregation seems to be completely controlled by the dipolar interaction. However, electrolyte addition not only controls the range of the total interaction between the particles, but also enhances the growth rate of the aggregation process. Taking into account the anisotropic character of these aggregation processes we propose a kernel that depends explicitly on the range of the dipolar interaction. The corresponding solutions of the Smoluchowski equation combined with theoretical models for the diffusion and light scattering by rigid rods reproduce the measured time evolution of the average perpendicular aggregate diffusion coefficient quite satisfactorily.

  3. Filament Eruption Onset

    NASA Technical Reports Server (NTRS)

    Sterling, Alphonse C.; Moore, Ronald L.

    2011-01-01

    We have been investigating filament eruptions in recent years. Use filament eruptions as markers of the coronal field evolution. Data from SoHO, Yohkoh, TRACE, Hinode, and other sources. We and others have observed: (1)Filaments often show slow rise, followed by fast rise, (2) Brightenings, preflares, microflares during slow rise (3) Magnetic evolution in hours prior to eruption onset. We investigated What do Hinode and SDO show for filament eruptions?

  4. Externally refuelled optical filaments

    NASA Astrophysics Data System (ADS)

    Scheller, Maik; Mills, Matthew S.; Miri, Mohammad-Ali; Cheng, Weibo; Moloney, Jerome V.; Kolesik, Miroslav; Polynkin, Pavel; Christodoulides, Demetrios N.

    2014-04-01

    Plasma channels produced in air through femtosecond laser filamentation hold great promise for a number of applications, including remote sensing, attosecond physics and spectroscopy, channelling microwaves and lightning protection. In such settings, extended filaments are desirable, yet their longitudinal span is limited by dissipative processes. Although various techniques aiming to prolong this process have been explored, the substantial extension of optical filaments remains a challenge. Here, we experimentally demonstrate that the natural range of a plasma column can be enhanced by at least an order of magnitude when the filament is prudently accompanied by an auxiliary beam. In this arrangement, the secondary low-intensity `dressing' beam propagates linearly and acts as a distributed energy reservoir, continuously refuelling the optical filament. Our approach offers an efficient and viable route towards the generation of extended light strings in air without inducing premature wave collapse or an undesirable beam break-up into multiple filaments.

  5. Tungsten Filament Fire

    ERIC Educational Resources Information Center

    Ruiz, Michael J.; Perkins, James

    2016-01-01

    We safely remove the outer glass bulb from an incandescent lamp and burn up the tungsten filament after the glass is removed. This demonstration dramatically illustrates the necessity of a vacuum or inert gas for the environment surrounding the tungsten filament inside the bulb. Our approach has added historical importance since the incandescent…

  6. Tungsten filament fire

    NASA Astrophysics Data System (ADS)

    Ruiz, Michael J.; Perkins, James

    2016-05-01

    We safely remove the outer glass bulb from an incandescent lamp and burn up the tungsten filament after the glass is removed. This demonstration dramatically illustrates the necessity of a vacuum or inert gas for the environment surrounding the tungsten filament inside the bulb. Our approach has added historical importance since the incandescent light bulb is being replaced by compact fluorescent and LED lamps.

  7. Sympathetic Solar Filament Eruptions

    NASA Astrophysics Data System (ADS)

    Wang, Rui; Liu, Ying D.; Zimovets, Ivan; Hu, Huidong; Dai, Xinghua; Yang, Zhongwei

    2016-08-01

    The 2015 March 15 coronal mass ejection as one of the two that together drove the largest geomagnetic storm of solar cycle 24 so far was associated with sympathetic filament eruptions. We investigate the relations between the different filaments involved in the eruption. A surge-like small-scale filament motion is confirmed as the trigger that initiated the erupting filament with multi-wavelength observations and using a forced magnetic field extrapolation method. When the erupting filament moved to an open magnetic field region, it experienced an obvious acceleration process and was accompanied by a C-class flare and the rise of another larger filament that eventually failed to erupt. We measure the decay index of the background magnetic field, which presents a critical height of 118 Mm. Combining with a potential field source surface extrapolation method, we analyze the distributions of the large-scale magnetic field, which indicates that the open magnetic field region may provide a favorable condition for F2 rapid acceleration and have some relation with the largest solar storm. The comparison between the successful and failed filament eruptions suggests that the confining magnetic field plays an important role in the preconditions for an eruption.

  8. Snake Filament Eruption

    NASA Video Gallery

    A very long solar filament that had been snaking around the Sun erupted on Dec. 6, 2010 with a flourish. NASA's Solar Dynamics Observatory (SDO) caught the action in dramatic detail in extreme ultr...

  9. Construction aggregates

    USGS Publications Warehouse

    Tepordei, V.V.

    1995-01-01

    Part of the 1994 Industrial Minerals Review. The production, consumption, and applications of construction aggregates are reviewed. In 1994, the production of construction aggregates, which includes crushed stone and construction sand and gravel combined, increased 7.7 percent to 2.14 Gt compared with the previous year. These record production levels are mostly a result of funding for highway construction work provided by the Intermodal Surface Transportation Efficiency Act of 1991. Demand is expected to increase for construction aggregates in 1995.

  10. Cleavage furrow: timing of emergence of contractile ring actin filaments and establishment of the contractile ring by filament bundling in sea urchin eggs.

    PubMed

    Mabuchi, I

    1994-07-01

    Cleavage furrow formation at the first cell division of sea urchin and sand dollar eggs was investigated in detail by fluorescence staining of actin filaments with rhodamine-phalloidin of either whole eggs or isolated egg cortices. Cortical actin filaments were clustered at anaphase and then the clusters became fibrillar at the end of anaphase. The timing when the contractile ring actin filaments appear was precisely determined in the course of mitosis: accumulation of the contractile ring actin filaments at the equatorial cell cortex is first noticed at the beginning of telophase (shortly before furrow formation), when the chromosomal vesicles are fusing with each other. The accumulated actin filaments were not well organized at the early stage but were organized into parallel bundles as the furrowing progressed. The bundles were finally fused into a tightly packed filament belt. Wheat germ agglutinin (WGA)-binding sites were distributed on the surface of the egg in a manner similar to the actin filaments after anaphase. The WGA-binding sites became accumulated in the contractile ring together with the contractile ring actin filaments, indicating an intimate relationship between these sites and actin filament-anchoring sites on the plasma membrane. Myosin also appeared in the contractile ring together with the actin filaments. The 'cleavage stimulus', a signal hypothesized by Rappaport (reviewed by R. Rappaport (1986) Int. Rev. Cytol. 105, 245-281) was suggested to induce aggregation or bundling of the actin filaments in the cortical layer.

  11. Subhalo Accretion through Filaments

    NASA Astrophysics Data System (ADS)

    González, Roberto E.; Padilla, Nelson D.

    2016-09-01

    We track subhalo orbits of galaxy- and group-sized halos in cosmological simulations. We identify filamentary structures around halos and use these to define a sample of subhalos accreted from filaments, as well as a control sample of subhalos accreted from other directions. We use these samples to study differences in satellite orbits produced by filamentary accretion. Our results depend on host halo mass. We find that for low masses, subhalos accreted from filaments show ∼10% shorter lifetimes compared to the control sample, show a tendency toward more radial orbits, reach halo central regions earlier, and are more likely to merge with the host. For higher-mass halos this lifetime difference dissipates and even reverses for cluster-sized halos. This behavior appears to be connected to the fact that more massive hosts are connected to stronger filaments with higher velocity coherence and density, with slightly more radial subhalo orbits. Because subhalos tend to follow the coherent flow of the filament, it is possible that such thick filaments are enough to shield the subhalo from the effect of dynamical friction at least during their first infall. We also identify subhalo pairs/clumps that merge with one another after accretion. They survive as a clump for only a very short time, which is even shorter for higher subhalo masses, suggesting that the Magellanic Clouds and other Local group satellite associations may have entered the Milky Way virial radius very recently and probably are in their first infall.

  12. Evolution of filament barbs.

    NASA Astrophysics Data System (ADS)

    Liu, R.; Xu, Y.; Wang, H.

    We present a selected few cases in which the sense of chirality of filament barbs changed within periods as short as hours. We investigate in detail a quiescent filament on 2003 September 10 and 11. Of its four barbs displaying such changes, only one overlays a small polarity inversion line inside the EUV filament channel (EFC). No magnetic elements with magnitude above the noise level were detected at the endpoints of all barbs. In particular, a pair of barbs first approached toward, and then departed from, each other in Halpha , with the barb endpoints migrating as far as ˜ 10 arcsec. We conclude that the evolution of the barbs was driven by flux emergence and cancellation of small bipolar units at the EFC border.

  13. Aerogel-supported filament

    DOEpatents

    Wuest, C.R.; Tillotson, T.M.; Johnson, C.V. III

    1995-05-16

    The present invention is a thin filament embedded in a low density aerogel for use in radiation detection instruments and incandescent lamps. The aerogel provides a supportive matrix that is thermally and electrically nonconductive, mechanically strong, highly porous, gas-permeable, and transparent to ionizing radiation over short distances. A low density, open-cell aerogel is cast around a fine filament or wire, which allows the wire to be positioned with little or no tension and keeps the wire in place in the event of breakage. The aerogel support reduces the stresses on the wire caused by vibrational, gravitational, electrical, and mechanical forces. 6 Figs.

  14. Aerogel-supported filament

    DOEpatents

    Wuest, Craig R.; Tillotson, Thomas M.; Johnson, III, Coleman V.

    1995-01-01

    The present invention is a thin filament embedded in a low density aerogel for use in radiation detection instruments and incandescent lamps. The aerogel provides a supportive matrix that is thermally and electrically nonconductive, mechanically strong, highly porous, gas-permeable, and transparent to ionizing radiation over short distances. A low density, open-cell aerogel is cast around a fine filament or wire, which allows the wire to be positioned with little or no tension and keeps the wire in place in the event of breakage. The aerogel support reduces the stresses on the wire caused by vibrational, gravitational, electrical, and mechanical forces.

  15. Semiflexible filamentous composites.

    PubMed

    Huisman, E M; Heussinger, C; Storm, C; Barkema, G T

    2010-09-10

    Inspired by the ubiquity of composite filamentous networks in nature, we investigate models of biopolymer networks that consist of interconnected floppy and stiff filaments. Numerical simulations carried out in three dimensions allow us to explore the microscopic partitioning of stresses and strains between the stiff and floppy fractions cs and cf and reveal a nontrivial relationship between the mechanical behavior and the relative fraction of stiff polymer: when there are few stiff polymers, nonpercolated stiff "inclusions" are protected from large deformations by an encompassing floppy matrix, while at higher fractions of stiff material the stiff network is independently percolated and dominates the mechanical response. PMID:20867610

  16. Construction aggregates

    USGS Publications Warehouse

    Langer, W.H.; Tepordei, V.V.; Bolen, W.P.

    2000-01-01

    Construction aggregates consist primarily of crushed stone and construction sand and gravel. Total estimated production of construction aggregates increased in 1999 by about 2% to 2.39 Gt (2.64 billion st) compared with 1998. This record production level continued an expansion that began in 1992. By commodities, crushed stone production increased 3.3%, while sand and gravel production increased by about 0.5%.

  17. Construction aggregates

    USGS Publications Warehouse

    Tepordei, V.V.

    1994-01-01

    Part of a special section on industrial minerals in 1993. The 1993 production of construction aggregates increased 6.3 percent over the 1992 figure, to reach 2.01 Gt. This represents the highest estimated annual production of combined crushed stone and construction sand and gravel ever recorded in the U.S. The outlook for construction aggregates and the issues facing the industry are discussed.

  18. Heat-induced formation of myosin oligomer-soluble filament complex in high-salt solution.

    PubMed

    Shimada, Masato; Takai, Eisuke; Ejima, Daisuke; Arakawa, Tsutomu; Shiraki, Kentaro

    2015-02-01

    Heat-induced aggregation of myosin into an elastic gel plays an important role in the water-holding capacity and texture of meat products. Here, we investigated thermal aggregation of porcine myosin in high-salt solution over a wide temperature range by dynamic light scattering experiments. The myosin samples were readily dissolved in 1.0 M NaCl at 25 °C followed by dilution into various salt concentrations. The diluted solutions consistently contained both myosin monomers and soluble filaments. The filament size decreased with increasing salt concentration and temperature. High temperatures above Tm led to at least partial dissociation of soluble filaments and thermal unfolding, resulting in the formation of soluble oligomers and binding to the persistently present soluble filaments. Such a complex formation between the oligomers and filaments has never been observed. Our results provide new insight into the heat-induced myosin gelation in high-salt solution.

  19. Solid friction between soft filaments.

    PubMed

    Ward, Andrew; Hilitski, Feodor; Schwenger, Walter; Welch, David; Lau, A W C; Vitelli, Vincenzo; Mahadevan, L; Dogic, Zvonimir

    2015-06-01

    Any macroscopic deformation of a filamentous bundle is necessarily accompanied by local sliding and/or stretching of the constituent filaments. Yet the nature of the sliding friction between two aligned filaments interacting through multiple contacts remains largely unexplored. Here, by directly measuring the sliding forces between two bundled F-actin filaments, we show that these frictional forces are unexpectedly large, scale logarithmically with sliding velocity as in solid-like friction, and exhibit complex dependence on the filaments' overlap length. We also show that a reduction of the frictional force by orders of magnitude, associated with a transition from solid-like friction to Stokes's drag, can be induced by coating F-actin with polymeric brushes. Furthermore, we observe similar transitions in filamentous microtubules and bacterial flagella. Our findings demonstrate how altering a filament's elasticity, structure and interactions can be used to engineer interfilament friction and thus tune the properties of fibrous composite materials.

  20. RecA-ssDNA filaments supercoil in the presence of single-stranded DNA-binding protein

    SciTech Connect

    Shi Weixian; Larson, Ronald G. . E-mail: rlarson@umich.edu

    2007-06-08

    Using atomic force microscopy (AFM), we find that RecA-single-stranded DNA (RecA-ssDNA) filaments, in the presence of single-stranded DNA-binding (SSB) protein, organize into left-handed bundles, which differ from the previously reported disordered aggregates formed when SSB is excluded from the reaction. In addition, we see both left- and right-handedness on bundles of two filaments. These two-filament supercoils, individual filaments, and other smaller bundles further organize into more complicated bundles, showing overall left-handedness which cannot be explained by earlier arguments that presumed supercoiling is absent in RecA-ssDNA filaments. This novel finding and our previous results regarding supercoiling of RecA-double-stranded DNA (RecA-dsDNA) filaments are, however, consistent with each other and can possibly be explained by the intrinsic tendency of RecA-DNA filaments, in their fully coated form, to order themselves into helical bundles, independent of the DNA inside the filaments (ssDNA or dsDNA). RecA-RecA interactions may dominate the bundling process, while the original conformation of DNA inside filaments and other factors (mechanical properties of filaments, concentration of filaments, and Mg{sup 2+} concentration) could contribute to the variation in the appearance and pitch of supercoils. The tendency of RecA-DNA filaments to form ordered supercoils and their presence during strand exchange suggest a possible biological importance of supercoiled filaments.

  1. Tau binds ATP and induces its aggregation.

    PubMed

    Farid, Mina; Corbo, Christopher P; Alonso, Alejandra Del C

    2014-02-01

    Tau is a microtubule-associated protein mainly found in neurons. The protein is associated with process of microtubule assembly, which plays an important role in intracellular transport and cell structure of the neuron. Tauopathies are a group of neurodegenerative diseases specifically associated with tau abnormalities. While a well-defined mechanism remains unknown, most facts point to tau as a prominent culprit in neurodegeneration. In most cases of Tauopathies, aggregates of hyperphosphorylated tau have been found. Two proposals are present when discussing tau toxicity, one being the aggregation of tau proteins and the other points toward a conformational change within the protein. Previous work we carried out showed tau hyperphosphorylation promotes tau to behave abnormally resulting in microtubule assembly disruption as well as a breakdown in tau self-assembly. We found that tau's N-terminal region has a putative site for ATP/GTP binding. In this paper we demonstrate that tau is able to bind ATP and not GTP, that this binding induces tau self-assembly into filaments. At 1 mM ATP the filaments are 4-7 nm in width, whereas at 10 mM ATP the filaments appeared to establish lateral interaction, bundling and twisting, forming filaments that resembled the Paired Helical Filaments (PHF) isolated from Alzheimer disease brain. ATP-induced self-assembly is not energy dependent because the nonhydrolysable analogue of the ATP induces the same assembly. PMID:24258797

  2. Trivalent Cation Induced Bundle Formation of Filamentous fd Phages.

    PubMed

    Korkmaz Zirpel, Nuriye; Park, Eun Jin

    2015-09-01

    Bacteriophages are filamentous polyelectrolyte viral rods infecting only bacteria. In this study, we investigate the bundle formation of fd phages with trivalent cations having different ionic radii (Al(3+) , La(3+) and Y(3+) ) at various phage and counterion concentrations, and at varying bundling times. Aggregated phage bundles were detected at relatively low trivalent counterion concentrations (1 mM). Although 10 mM and 100 mM Y(3+) and La(3+) treatments formed larger and more intertwined phage bundles, Al(3+) and Fe(3+) treatments lead to the formation of networking filaments. Energy dispersive X-ray spectroscopy (EDX) analyses confirmed the presence of C, N and O peaks on densely packed phage bundles. Immunofluorescence labelling and ELISA analyses with anti-p8 antibodies showed the presence of phage filaments after bundling.

  3. CVD-produced boron filaments

    NASA Technical Reports Server (NTRS)

    Wawner, F. E.; Debolt, H. E.; Suplinskas, R. D.

    1980-01-01

    A technique for producing boron filaments with an average tensile strength of 6.89 GPa has been developed which involves longitudinal splitting of the filament and core (substrate) removal by etching. Splitting is accomplished by a pinch wheel device which continuously splits filaments in lengths of 3.0 m by applying a force to the side of the filament to create a crack which is then propagated along the axis by a gentle sliding action. To facilitate the splitting, a single 10 mil tungsten substrate is used instead of the usual 0.5 mil substrate. A solution of hot 30% hydrogen peroxide is used to remove the core without attacking the boron. An alternative technique is to alter the residual stress by heavily etching the filament. Average strengths in the 4.83-5.52 GPa range have been obtained by etching an 8 mil filament to 4 mil.

  4. Filament wound structure and method

    DOEpatents

    Dritt, William S.; Gerth, Howard L.; Knight, Jr., Charles E.; Pardue, Robert M.

    1977-01-01

    The present invention relates to a filament wound spherical structure comprising a plurality of filament band sets disposed about the surface of a mandrel with each band of each set formed of a continuous filament circumferentially wound about the mandrel a selected number of circuits and with each circuit of filament being wound parallel to and contiguous with an immediate previously wound circuit. Each filament band in each band set is wound at the same helix angle from the axis of revolution of the mandrel and all of the bands of each set are uniformly distributed about the mandrel circumference. The pole-to-equator wall thickness taper associated with each band set, as several contiguous band sets are wound about the mandrel starting at the poles, is accumulative as the band sets are nested to provide a complete filament wound sphere of essentially uniform thickness.

  5. Construction aggregates

    USGS Publications Warehouse

    Nelson, T.I.; Bolen, W.P.

    2007-01-01

    Construction aggregates, primarily stone, sand and gravel, are recovered from widespread naturally occurring mineral deposits and processed for use primarily in the construction industry. They are mined, crushed, sorted by size and sold loose or combined with portland cement or asphaltic cement to make concrete products to build roads, houses, buildings, and other structures. Much smaller quantities are used in agriculture, cement manufacture, chemical and metallurgical processes, glass production and many other products.

  6. Construction aggregates

    USGS Publications Warehouse

    Tepordei, V.V.

    1996-01-01

    Part of the Annual Commodities Review 1995. Production of construction aggregates such as crushed stone and construction sand and gravel showed a marginal increase in 1995. Most of the 1995 increases were due to funding for highway construction work. The major areas of concern to the industry included issues relating to wetlands classification and the classification of crystalline silica as a probable human carcinogen. Despite this, an increase in demand is anticipated for 1996.

  7. Construction aggregates

    USGS Publications Warehouse

    Tepordei, V.V.

    1993-01-01

    Part of a special section on the market performance of industrial minerals in 1992. Production of construction aggregates increased by 4.6 percent in 1992. This increase was due, in part, to the increased funding for transportation and infrastructure projects. The U.S. produced about 1.05 Gt of crushed stone and an estimated 734 Mt of construction sand and gravel in 1992. Demand is expected to increase by about 5 percent in 1993.

  8. Ferritin is associated with the aberrant tau filaments present in progressive supranuclear palsy.

    PubMed Central

    Pérez, M.; Valpuesta, J. M.; de Garcini, E. M.; Quintana, C.; Arrasate, M.; López Carrascosa, J. L.; Rábano, A.; García de Yébenes, J.; Avila, J.

    1998-01-01

    Tau-containing filaments purified from the brain of progressive supranuclear palsy (PSP) patients were isolated and characterized. These filaments co-purify with regular particles that biophysical and biochemical methods identified as ferritin shells. In vivo, brain tau accumulation in PSP co-localized with ferritin. These results suggest that ferritin/iron could modulate the formation of tau aggregates in PSP. Images Figure 1 Figure 2 Figure 3 Figure 4 Figure 6 PMID:9626057

  9. Construction aggregates

    USGS Publications Warehouse

    Bolen, W.P.; Tepordei, V.V.

    2001-01-01

    The estimated production during 2000 of construction aggregates, crushed stone, and construction sand and gravel increased by about 2.6% to 2.7 Gt (3 billion st), compared with 1999. The expansion that started in 1992 continued with record production levels for the ninth consecutive year. By commodity, construction sand and gravel production increased by 4.5% to 1.16 Gt (1.28 billion st), while crushed stone production increased by 1.3% to 1.56 Gt (1.72 billion st).

  10. Thermodynamic analysis of conductive filaments

    NASA Astrophysics Data System (ADS)

    Karpov, V.; Niraula, D.; Karpov, I.

    2016-08-01

    We present a thermodynamic theory of the conductive filament growth and dissolution in random access memory describing the observed features of their current-voltage (IV) characteristics. Our theory is based on the self-consisted Fokker-Planck approach reducing the filament kinetics to its thermodynamics. Expressing the observed IV features through material parameters, our results pave a way to device improvements.

  11. Dynamics of contracting viscoelastic filaments

    NASA Astrophysics Data System (ADS)

    Harris, Michael; Appathurai, Santosh; Bhat, Pradeep; Basaran, Osman

    2009-11-01

    Satellite drops are detrimental to many industrial applications involving the formation of viscoelastic drops including inkjet printing, DNA microarraying, and printing of flexible solar cells. The precursor to these satellite drops is a slender liquid filament that connects an about-to-form drop to the rest of the liquid in the nozzle. Once a filament is formed, it contracts due to surface tension. A filament may undergo further breakup during recoil. Whereas the contraction of Newtonian filaments in a passive ambient fluid is well understood (Schulkes 1996 and Notz and Basaran 2004), the contraction dynamics of viscoelastic filaments remains largely unexplored and is addressed in this presentation. Here the filament shape is idealized as an axisymmetric fluid cylinder terminated by hemispherical end-caps, and the conformation tensor formalism (Pasquali & Scriven 2002) is used to model the viscoelasticity. The dynamics of contracting filaments are then analyzed by means of both a well-benchmarked two-dimensional finite element algorithm (Notz et al. 2001, Chen et al. 2002) and a one-dimensional slender-jet algorithm (Padgett et al. 1996). Regions of the parameter space are identified where recoiling filaments give rise to either a single satellite drop or multiple satellites.

  12. Cinnamon extract inhibits tau aggregation associated with Alzheimer’s Disease in vitro

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An aqueous extract of Ceylon cinnamon (C. zeylanicum) was found to inhibit tau aggregation and filament formation, hallmarks of Alzheimer’s disease (AD) in vitro using brain cells taken from patients who died with AD. The extract also promoted complete disassembly of recombinant tau filaments, and ...

  13. Haemostatic role of intermediate filaments in adhered platelets: importance of the membranous system stability.

    PubMed

    Cerecedo, Doris; Martínez-Vieyra, Ivette; Mondragón, Ricardo; Mondragón, Mónica; González, Sirenia; Galván, Iván J

    2013-09-01

    The role of platelets in coagulation and the haemostatic process was initially suggested two centuries ago, and under appropriate physiological stimuli, these undergo abrupt morphological changes, attaching and spreading on damaged endothelium, preventing bleeding. During the adhesion process, platelet cytoskeleton reorganizes generating compartments in which actin filaments, microtubules, and associated proteins are arranged in characteristic patterns mediating crucial events, such as centralization of their organelles, secretion of granule contents, aggregation with one another to form a haemostatic plug, and retraction of these aggregates. However, the role of Intermediate filaments during the platelet adhesion process has not been explored. J. Cell. Biochem. 114: 2050-2060, 2013. © 2013 Wiley Periodicals, Inc.

  14. Intermediate Filaments: A Historical Perspective

    PubMed Central

    Oshima, Robert G.

    2007-01-01

    Intracellular protein filaments intermediate in size between actin microfilaments and microtubules are composed of a surprising variety of tissue specific proteins commonly interconnected with other filamentous systems for mechanical stability and decorated by a variety of proteins that provide specialized functions. The sequence conservation of the coiled-coil, alpha-helical structure responsible for polymerization into individual 10 nm filaments defines the classification of intermediate filament proteins into a large gene family. Individual filaments further assemble into bundles and branched cytoskeletons visible in the light microscope. However, it is the diversity of the variable terminal domains that likely contributes most to different functions. The search for the functions of intermediate filament proteins has led to discoveries of roles in diseases of the skin, heart, muscle, liver, brain, adipose tissues and even premature aging. The diversity of uses of intermediate filaments as structural elements and scaffolds for organizing the distribution of decorating molecules contrasts with other cytoskeletal elements. This review is an attempt to provide some recollection of how such a diverse field emerged and changed over about 30 years. PMID:17493611

  15. Perturbation growth in accreting filaments

    NASA Astrophysics Data System (ADS)

    Clarke, S. D.; Whitworth, A. P.; Hubber, D. A.

    2016-05-01

    We use smoothed particle hydrodynamic simulations to investigate the growth of perturbations in infinitely long filaments as they form and grow by accretion. The growth of these perturbations leads to filament fragmentation and the formation of cores. Most previous work on this subject has been confined to the growth and fragmentation of equilibrium filaments and has found that there exists a preferential fragmentation length-scale which is roughly four times the filament's diameter. Our results show a more complicated dispersion relation with a series of peaks linking perturbation wavelength and growth rate. These are due to gravo-acoustic oscillations along the longitudinal axis during the sub-critical phase of growth. The positions of the peaks in growth rate have a strong dependence on both the mass accretion rate onto the filament and the temperature of the gas. When seeded with a multiwavelength density power spectrum, there exists a clear preferred core separation equal to the largest peak in the dispersion relation. Our results allow one to estimate a minimum age for a filament which is breaking up into regularly spaced fragments, as well as an average accretion rate. We apply the model to observations of filaments in Taurus by Tafalla & Hacar and find accretion rates consistent with those estimated by Palmeirim et al.

  16. Quiet-Region Filament Eruptions

    NASA Technical Reports Server (NTRS)

    Choudhary, Debi Prasad; Moore, Ronald L.

    2004-01-01

    We report characteristics of quiescent filament eruptions that did not produce coronal mass ejections (CMEs). It is known that there is a dichotomy of quiescent filament eruptions: those that produce CMEs and those that do not. We examined the quiescent filament eruptions, each of which was located far from disk center (greater than or equal to 0.7 R(sub Sun)) in diffuse remnant magnetic fields of decayed active regions, was well observed in Ha observations and Fe XII, and had good coronagraph coverage. We present the similarity and differences of two classes of filament eruptions. From their lack of CME production and the appearance of their eruptive motion in Fe XII movies, we conclude that the non-CME-producing filament eruptions are confined eruptions like the confined filament eruptions in active regions. We take the similarity of the confined and eruptive quiescent filament eruptions with their active-region counterparts to favor runaway tether-cutting connection for unleashing the magnetic explosion in all these eruptions.

  17. Metabolic regulation via enzyme filamentation

    PubMed Central

    Aughey, Gabriel N.; Liu, Ji-Long

    2016-01-01

    Abstract Determining the mechanisms of enzymatic regulation is central to the study of cellular metabolism. Regulation of enzyme activity via polymerization-mediated strategies has been shown to be widespread, and plays a vital role in mediating cellular homeostasis. In this review, we begin with an overview of the filamentation of CTP synthase, which forms filamentous structures termed cytoophidia. We then highlight other important examples of the phenomenon. Moreover, we discuss recent data relating to the regulation of enzyme activity by compartmentalization into cytoophidia. Finally, we hypothesize potential roles for enzyme filament formation in the regulation of metabolism, development and disease. PMID:27098510

  18. Centromeres of filamentous fungi

    PubMed Central

    Smith, Kristina M.; Galazka, Jonathan M.; Phatale, Pallavi A.; Connolly, Lanelle R.; Freitag, Michael

    2012-01-01

    How centromeres are assembled and maintained remains one of the fundamental questions in cell biology. Over the past 20 years the idea of centromeres as precise genetic loci has been replaced by the realization that it is predominantly the protein complement that defines centromere localization and function. Thus, placement and maintenance of centromeres are excellent examples of epigenetic phenomena in the strict sense. In contrast, the highly derived “point centromeres” of the budding yeast Saccharomyces cerevisiae and its close relatives are counterexamples for this general principle of centromere maintenance. While we have learned much in the past decade, it remains unclear if mechanisms for epigenetic centromere placement and maintenance are shared amongst various groups of organisms. For that reason it seems prudent to examine species from many different phylogenetic groups with the aim to extract comparative information that will yield a more complete picture of cell division in all eukaryotes. This review addresses what has been learned by studying the centromeres of filamentous fungi, a large, heterogeneous group of organisms that includes important plant, animal and human pathogens, saprobes and symbionts that fulfill essential roles in the biosphere, as well as a growing number of taxa that have become indispensable for industrial use. PMID:22752455

  19. Metal ion-dependent, reversible, protein filament formation by designed beta-roll polypeptides

    PubMed Central

    Scotter, Andrew J; Guo, Meng; Tomczak, Melanie M; Daley, Margaret E; Campbell, Robert L; Oko, Richard J; Bateman, David A; Chakrabartty, Avijit; Sykes, Brian D; Davies, Peter L

    2007-01-01

    Background A right-handed, calcium-dependent β-roll structure found in secreted proteases and repeat-in-toxin proteins was used as a template for the design of minimal, soluble, monomeric polypeptides that would fold in the presence of Ca2+. Two polypeptides were synthesised to contain two and four metal-binding sites, respectively, and exploit stacked tryptophan pairs to stabilise the fold and report on the conformational state of the polypeptide. Results Initial analysis of the two polypeptides in the presence of calcium suggested the polypeptides were disordered. The addition of lanthanum to these peptides caused aggregation. Upon further study by right angle light scattering and electron microscopy, the aggregates were identified as ordered protein filaments that required lanthanum to polymerize. These filaments could be disassembled by the addition of a chelating agent. A simple head-to-tail model is proposed for filament formation that explains the metal ion-dependency. The model is supported by the capping of one of the polypeptides with biotin, which disrupts filament formation and provides the ability to control the average length of the filaments. Conclusion Metal ion-dependent, reversible protein filament formation is demonstrated for two designed polypeptides. The polypeptides form filaments that are approximately 3 nm in diameter and several hundred nm in length. They are not amyloid-like in nature as demonstrated by their behaviour in the presence of congo red and thioflavin T. A capping strategy allows for the control of filament length and for potential applications including the "decoration" of a protein filament with various functional moieties. PMID:17908326

  20. Electron emitting filaments for electron discharge devices

    DOEpatents

    Leung, K.N.; Pincosy, P.A.; Ehlers, K.W.

    1983-06-10

    Electrons are copiously emitted by a device comprising a loop-shaped filament made of lanthanum hexaboride. The filament is directly heated by an electrical current produced along the filament by a power supply connected to the terminal legs of the filament. To produce a filament, a diamond saw or the like is used to cut a slice from a bar made of lanthanum hexaboride. The diamond saw is then used to cut the slice into the shape of a loop which may be generally rectangular, U-shaped, hairpin-shaped, zigzag-shaped, or generally circular. The filaments provide high electron emission at a relatively low operating temperature, such as 1600/sup 0/C. To achieve uniform heating, the filament is formed with a cross section which is tapered between the opposite ends of the filament to compensate for nonuniform current distribution along the filament due to the emission of electrons from the filament.

  1. Electron emitting filaments for electron discharge devices

    DOEpatents

    Leung, Ka-Ngo; Pincosy, Philip A.; Ehlers, Kenneth W.

    1988-01-01

    Electrons are copiously emitted by a device comprising a loop-shaped filament made of lanthanum hexaboride. The filament is directly heated by an electrical current produced along the filament by a power supply connected to the terminal legs of the filament. To produce a filament, a diamond saw or the like is used to cut a slice from a bar made of lanthanum hexaboride. The diamond saw is then used to cut the slice into the shape of a loop which may be generally rectangular, U-shaped, hairpin-shaped, zigzag-shaped, or generally circular. The filaments provide high electron emission at a relatively low operating temperature, such as 1600.degree. C. To achieve uniform heating, the filament is formed with a cross section which is tapered between the opposite ends of the filament to compensate for non-uniform current distribution along the filament due to the emission of electrons from the filament.

  2. Boolean gates on actin filaments

    NASA Astrophysics Data System (ADS)

    Siccardi, Stefano; Tuszynski, Jack A.; Adamatzky, Andrew

    2016-01-01

    Actin is a globular protein which forms long polar filaments in the eukaryotic cytoskeleton. Actin networks play a key role in cell mechanics and cell motility. They have also been implicated in information transmission and processing, memory and learning in neuronal cells. The actin filaments have been shown to support propagation of voltage pulses. Here we apply a coupled nonlinear transmission line model of actin filaments to study interactions between voltage pulses. To represent digital information we assign a logical TRUTH value to the presence of a voltage pulse in a given location of the actin filament, and FALSE to the pulse's absence, so that information flows along the filament with pulse transmission. When two pulses, representing Boolean values of input variables, interact, then they can facilitate or inhibit further propagation of each other. We explore this phenomenon to construct Boolean logical gates and a one-bit half-adder with interacting voltage pulses. We discuss implications of these findings on cellular process and technological applications.

  3. Droplets engulfing on a filament

    NASA Astrophysics Data System (ADS)

    Wu, Xiang-Fa; Yu, Meng; Zhou, Zhengping; Bedarkar, Amol; Zhao, Youhao

    2014-03-01

    Two immiscible droplets wetting on a filament may assume engulfing, partial-engulfing, or non-engulfing morphology that depends on the wetting behavior and geometries of the resulting droplet-on-filament system. This paper studies the wetting behavior of two immiscible droplets contacting and sitting symmetrically on a straight filament. A set of ordinary differential equations (ODEs) is formulated for determining the wetting morphology of the droplet-on-filament system. In the limiting case of engulfing or non-engulfing, the morphology of the droplet-on-filament system is determined in explicit form. In the case of partial-engulfing, surface finite element method is further employed for determining the wetting morphology, surface energy, and internal pressures of droplets of the system. Numerical scaling study is performed to explore their dependencies upon the wetting properties and geometries of the system. The study can be applicable for analysis and design of textiles with tailorable wetting properties and development of novel multifunctional fibrous materials for environmental protection such as oil-spill sorption, etc.

  4. Graphite filament wound pressure vessels

    NASA Technical Reports Server (NTRS)

    Feldman, A.; Damico, J. J.

    1972-01-01

    Filament wound NOL rings, 4-inch and 8-inch diameter closed-end vessels involving three epoxy resin systems and three graphite fibers were tested to develop property data and fabrication technology for filament wound graphite/epoxy pressure vessels. Vessels were subjected to single-cycle burst tests at room temperature. Manufacturing parameters were established for tooling, winding, and curing that resulted in the development of a pressure/vessel performance factor (pressure x volume/weight) or more than 900,000 in. for an oblate spheroid specimen.

  5. Intermediate Filaments in Caenorhabditis elegans.

    PubMed

    Zuela, Noam; Gruenbaum, Yosef

    2016-01-01

    More than 70 different genes in humans and 12 different genes in Caenorhabditis elegans encode the superfamily of intermediate filament (IF) proteins. In C. elegans, similar to humans, these proteins are expressed in a cell- and tissue-specific manner, can assemble into heteropolymers and into 5-10nm wide filaments that account for the principal structural elements at the nuclear periphery, nucleoplasm, and cytoplasm. At least 5 of the 11 cytoplasmic IFs, as well as the nuclear IF, lamin, are essential. In this chapter, we will include a short review of our current knowledge of both cytoplasmic and nuclear IFs in C. elegans and will describe techniques used for their analyses.

  6. Nonequilibrium transport in superconducting filaments

    NASA Technical Reports Server (NTRS)

    Arutyunov, K. YU.; Danilova, N. P.; Nikolaeva, A. A.

    1995-01-01

    The step-like current-voltage characteristics of highly homogeneous single-crystalline tin and indium thin filaments has been measured. The length of the samples L approximately 1 cm was much greater than the nonequilibrium quasiparticle relaxation length Lambda. It was found that the activation of a successive i-th voltage step occurs at current significantly greater than the one derived with the assumption that the phase slip centers are weakly interacting on a scale L much greater than Lambda. The observation of 'subharmonic' fine structure on the voltage-current characteristics of tin filaments confirms the hypothesis of the long-range phase slip centers interaction.

  7. Coiling of a viscous filament

    NASA Astrophysics Data System (ADS)

    Samuel, A. D. T.; Ryu, W. S.; Mahadevan, L.

    1997-11-01

    A classic demonstration of fluid buckling is a daily occurence at the breakfast table, where a continuous stream of viscous fluid (honey) is often poured onto a flat surface (toast) from a sufficient height. The thin fluid filament quickly settles into a steady state; near the surface it bends into a helical shape while simultaneously rotating about the vertical and is laid out in a regular coil. This behavior is reminiscent of the coiling of a falling flexible rope. We derive a simple scaling law that predicts the coiling frequency in terms of the filament radius and the flow rate. We also verify this scaling law with the results of experiments.

  8. Genetic engineering of filamentous fungi.

    PubMed

    Timberlake, W E; Marshall, M A

    1989-06-16

    Filamentous fungi are important in medicine, industry, agriculture, and basic biological research. For example, some fungal species are pathogenic to humans, whereas others produce beta-lactam antibiotics (penicillin and cephalosporin). Industrial strains produce large amounts of enzymes, such as glucoamylase and proteases, and low molecular weight compounds, such as citric acid. The largest and most economically important group of plant pathogens are fungi. Several fungal species have biological properties and genetic systems that make them ideally suited for basic biological research. Recently developed techniques for genetic engineering of filamentous fungi make it possible to alter their detrimental and beneficial activities in novel ways.

  9. SDO Watches Giant Filament on the Sun

    NASA Video Gallery

    A snaking, extended filament of solar material currently lies on the front of the sun-- some 1 million miles across from end to end. Filaments are clouds of solar material suspended above the sun b...

  10. SDO Sees a Dark Filament Circle

    NASA Video Gallery

    A dark, almost circular filament broke away from the sun in a gauzy, feathery swirl, on Nov. 15, 2015, in this video from NASA’s Solar Dynamics Observatory. This filament eruption was followed by a...

  11. Role of Intermediate Filaments in Vesicular Traffic.

    PubMed

    Margiotta, Azzurra; Bucci, Cecilia

    2016-01-01

    Intermediate filaments are an important component of the cellular cytoskeleton. The first established role attributed to intermediate filaments was the mechanical support to cells. However, it is now clear that intermediate filaments have many different roles affecting a variety of other biological functions, such as the organization of microtubules and microfilaments, the regulation of nuclear structure and activity, the control of cell cycle and the regulation of signal transduction pathways. Furthermore, a number of intermediate filament proteins have been involved in the acquisition of tumorigenic properties. Over the last years, a strong involvement of intermediate filament proteins in the regulation of several aspects of intracellular trafficking has strongly emerged. Here, we review the functions of intermediate filaments proteins focusing mainly on the recent knowledge gained from the discovery that intermediate filaments associate with key proteins of the vesicular membrane transport machinery. In particular, we analyze the current understanding of the contribution of intermediate filaments to the endocytic pathway. PMID:27120621

  12. Intermediate filaments: not just for structure anymore.

    PubMed

    Liem, Ronald K H

    2013-04-22

    A recent paper has identified the tumor suppressor APC as a linker protein between intermediate filaments and microtubules. In the absence of APC, intermediate filaments collapse and the cells are no longer polarized and fail to migrate.

  13. Role of Intermediate Filaments in Vesicular Traffic

    PubMed Central

    Margiotta, Azzurra; Bucci, Cecilia

    2016-01-01

    Intermediate filaments are an important component of the cellular cytoskeleton. The first established role attributed to intermediate filaments was the mechanical support to cells. However, it is now clear that intermediate filaments have many different roles affecting a variety of other biological functions, such as the organization of microtubules and microfilaments, the regulation of nuclear structure and activity, the control of cell cycle and the regulation of signal transduction pathways. Furthermore, a number of intermediate filament proteins have been involved in the acquisition of tumorigenic properties. Over the last years, a strong involvement of intermediate filament proteins in the regulation of several aspects of intracellular trafficking has strongly emerged. Here, we review the functions of intermediate filaments proteins focusing mainly on the recent knowledge gained from the discovery that intermediate filaments associate with key proteins of the vesicular membrane transport machinery. In particular, we analyze the current understanding of the contribution of intermediate filaments to the endocytic pathway. PMID:27120621

  14. METHOD OF MAKING TUNGSTEN FILAMENTS

    DOEpatents

    Frazer, J.W.

    1962-12-18

    A method of making tungsten filaments is described in which the tungsten is completely free of isotope impurities in the range of masses 234 to 245 for use in mass spectrometers. The filament comprises a tantalum core generally less than 1 mil in diameter having a coating of potassium-free tantalum-diffused tungsten molecularly bonded thereto. In the preferred process of manufacture a short, thin tantalum filament is first mounted between terminal posts mounted in insulated relation through a backing plate. The tungsten is most conveniently vapor plated onto the tantalum by a tungsten carbonyl vapor decomposition method having a critical step because of the tendency of the tantalum to volatilize at the temperature of operntion of the filament. The preferred recipe comprises volatilizing tantalum by resistance henting until the current drops by about 40%, cutting the voltage back to build up the tungsten, and then gradually building the temperature back up to balance the rate of tungsten deposition with the rate of tantalum volatilization. (AEC)

  15. Smectic filaments in colloidal suspensions of rods.

    PubMed

    Frenkel, Daan; Schilling, Tanja

    2002-10-01

    In supersaturated isotropic mixtures of hard rods, smectic filaments have recently been observed. We propose a model for formation and growth of these filaments similar to the Hoffman-Lauritzen model for polymer crystallization. Filament thickness is determined by a compromise between maximizing the amount of smectic phase formed and minimizing the nucleation barrier for adding new segments to the growing filament. We compare our analytical results to kinetic Monte Carlo simulations.

  16. 14-3-3ζ Mediates Tau Aggregation in Human Neuroblastoma M17 Cells.

    PubMed

    Li, Tong; Paudel, Hemant K

    2016-01-01

    Microtubule-associated protein tau is the major component of paired helical filaments (PHFs) associated with the neuropathology of Alzheimer's disease (AD). Tau in the normal brain binds and stabilizes microtubules. Tau isolated from PHFs is hyperphosphorylated, which prevents it from binding to microtubules. Tau phosphorylation has been suggested to be involved in the development of NFT pathology in the AD brain. Recently, we showed that 14-3-3ζ is bound to tau in the PHFs and when incubated in vitro with 14-3-3ζ, tau formed amorphous aggregates, single-stranded straight filaments, double stranded ribbon-like filaments and PHF-like filaments that displayed close resemblance with corresponding ultrastructures of AD brain. Surprisingly however, phosphorylated and non-phosphorylated tau aggregated in a similar manner, indicating that tau phosphorylation does not affect in vitro tau aggregation (Qureshi et al (2013) Biochemistry 52, 6445-6455). In this study, we have examined the role of tau phosphorylation in tau aggregation in cellular level. We have found that in human M17 neuroblastoma cells, tau phosphorylation by GSK3β or PKA does not cause tau aggregation, but promotes 14-3-3ζ-induced tau aggregation by destabilizing microtubules. Microtubule disrupting drugs also promoted 14-3-3ζ-induced tau aggregation without changing tau phosphorylation in M17 cell. In vitro, when incubated with 14-3-3ζ and microtubules, nonphosphorylated tau bound to microtubules and did not aggregate. Phosphorylated tau on the other hand did not bind to microtubules and aggregated. Our data indicate that microtubule-bound tau is resistant to 14-3-3ζ-induced tau aggregation and suggest that tau phosphorylation promotes tau aggregation in the brain by detaching tau from microtubules and thus making it accessible to 14-3-3ζ. PMID:27548710

  17. 14-3-3ζ Mediates Tau Aggregation in Human Neuroblastoma M17 Cells

    PubMed Central

    Li, Tong; Paudel, Hemant K.

    2016-01-01

    Microtubule-associated protein tau is the major component of paired helical filaments (PHFs) associated with the neuropathology of Alzheimer’s disease (AD). Tau in the normal brain binds and stabilizes microtubules. Tau isolated from PHFs is hyperphosphorylated, which prevents it from binding to microtubules. Tau phosphorylation has been suggested to be involved in the development of NFT pathology in the AD brain. Recently, we showed that 14-3-3ζ is bound to tau in the PHFs and when incubated in vitro with 14-3-3ζ, tau formed amorphous aggregates, single-stranded straight filaments, double stranded ribbon-like filaments and PHF-like filaments that displayed close resemblance with corresponding ultrastructures of AD brain. Surprisingly however, phosphorylated and non-phosphorylated tau aggregated in a similar manner, indicating that tau phosphorylation does not affect in vitro tau aggregation (Qureshi et al (2013) Biochemistry 52, 6445–6455). In this study, we have examined the role of tau phosphorylation in tau aggregation in cellular level. We have found that in human M17 neuroblastoma cells, tau phosphorylation by GSK3β or PKA does not cause tau aggregation, but promotes 14-3-3ζ-induced tau aggregation by destabilizing microtubules. Microtubule disrupting drugs also promoted 14-3-3ζ-induced tau aggregation without changing tau phosphorylation in M17 cell. In vitro, when incubated with 14-3-3ζ and microtubules, nonphosphorylated tau bound to microtubules and did not aggregate. Phosphorylated tau on the other hand did not bind to microtubules and aggregated. Our data indicate that microtubule-bound tau is resistant to 14-3-3ζ-induced tau aggregation and suggest that tau phosphorylation promotes tau aggregation in the brain by detaching tau from microtubules and thus making it accessible to 14-3-3ζ. PMID:27548710

  18. Single turnovers of fluorescent ATP bound to bipolar myosin filament during actin filaments sliding.

    PubMed

    Maruta, Takahiro; Kobatake, Takahiro; Okubo, Hiroyuki; Chaen, Shigeru

    2013-01-01

    The nucleotide turnover rates of bipolar myosin thick filament along which actin filament slides were measured by the displacement of prebound fluorescent ATP analog 2'(3')-O-[N-[2-[(Cy3)]amindo]ethyl] carbamoyl]-adenosine 5' triphosphate (Cy3-EDA-ATP) upon flash photolysis of caged ATP. The fluorescence of the thick filament where actin filament slides decayed with two exponential processes. The slower rate constant was the same as that without actin filament. Along bipolar myosin thick filament, actin filaments slide at a fast speed towards the central bare zone (forward), but more slowly away from the bare zone (backward). The displacement rate constant of fluorescent ATP from the myosin filament where actin filament moved forward was 5.0 s(-1), whereas the rate constant where the actin filament slid backward was 1.7 s(-1). These findings suggest that the slow ADP release rate is responsible for the slow backward sliding movement.

  19. Structural determinants of Tau aggregation inhibitor potency.

    PubMed

    Schafer, Kelsey N; Cisek, Katryna; Huseby, Carol J; Chang, Edward; Kuret, Jeff

    2013-11-01

    Small-molecule Tau aggregation inhibitors are under investigation as potential therapeutic agents against Alzheimer disease. Many such inhibitors have been identified in vitro, but their potency-driving features, and their molecular targets in the Tau aggregation pathway, have resisted identification. Previously we proposed ligand polarizability, a measure of electron delocalization, as a candidate descriptor of inhibitor potency. Here we tested this hypothesis by correlating the ground state polarizabilities of cyanine, phenothiazine, and arylmethine derivatives calculated using ab initio quantum methods with inhibitory potency values determined in the presence of octadecyl sulfate inducer under reducing conditions. A series of rhodanine analogs was analyzed as well using potency values disclosed in the literature. Results showed that polarizability and inhibitory potency directly correlated within all four series. To identify putative binding targets, representative members of the four chemotypes were added to aggregation reactions, where they were found to stabilize soluble, but SDS-resistant Tau species at the expense of filamentous aggregates. Using SDS resistance as a secondary assay, and a library of Tau deletion and missense mutants as targets, interaction with cyanine was localized to the microtubule binding repeat region. Moreover, the SDS-resistant phenotype was completely dependent on the presence of octadecyl sulfate inducer, but not intact PHF6/PH6* hexapeptide motifs, indicating that cyanine interacted with a species in the aggregation pathway prior to nucleus formation. Together the data suggest that flat, highly polarizable ligands inhibit Tau aggregation by interacting with folded species in the aggregation pathway and driving their assembly into soluble but highly stable Tau oligomers.

  20. Structural Determinants of Tau Aggregation Inhibitor Potency*

    PubMed Central

    Schafer, Kelsey N.; Cisek, Katryna; Huseby, Carol J.; Chang, Edward; Kuret, Jeff

    2013-01-01

    Small-molecule Tau aggregation inhibitors are under investigation as potential therapeutic agents against Alzheimer disease. Many such inhibitors have been identified in vitro, but their potency-driving features, and their molecular targets in the Tau aggregation pathway, have resisted identification. Previously we proposed ligand polarizability, a measure of electron delocalization, as a candidate descriptor of inhibitor potency. Here we tested this hypothesis by correlating the ground state polarizabilities of cyanine, phenothiazine, and arylmethine derivatives calculated using ab initio quantum methods with inhibitory potency values determined in the presence of octadecyl sulfate inducer under reducing conditions. A series of rhodanine analogs was analyzed as well using potency values disclosed in the literature. Results showed that polarizability and inhibitory potency directly correlated within all four series. To identify putative binding targets, representative members of the four chemotypes were added to aggregation reactions, where they were found to stabilize soluble, but SDS-resistant Tau species at the expense of filamentous aggregates. Using SDS resistance as a secondary assay, and a library of Tau deletion and missense mutants as targets, interaction with cyanine was localized to the microtubule binding repeat region. Moreover, the SDS-resistant phenotype was completely dependent on the presence of octadecyl sulfate inducer, but not intact PHF6/PH6* hexapeptide motifs, indicating that cyanine interacted with a species in the aggregation pathway prior to nucleus formation. Together the data suggest that flat, highly polarizable ligands inhibit Tau aggregation by interacting with folded species in the aggregation pathway and driving their assembly into soluble but highly stable Tau oligomers. PMID:24072703

  1. Characterization of paired helical filaments by scanning transmission electron microscopy.

    PubMed

    Ksiezak-Reding, Hanna; Wall, Joseph S

    2005-07-01

    Paired helical filaments (PHFs) are abnormal twisted filaments composed of hyperphosphorylated tau protein. They are found in Alzheimer's disease and other neurodegenerative disorders designated as tauopathies. They are a major component of intracellular inclusions known as neurofibrillary tangles (NFTs). The objective of this review is to summarize various structural studies of PHFs in which using scanning transmission electron microscopy (STEM) has been particularly informative. STEM provides shape and mass per unit length measurements important for studying ultrastructural aspects of filaments. These include quantitative comparisons between dispersed and aggregated populations of PHFs as well as comparative studies of PHFs in Alzheimer's disease and other neurodegenerative disorders. Other approaches are also discussed if relevant or complementary to studies using STEM, e.g., application of a novel staining reagent, Nanovan. Our understanding of the PHF structure and the development of PHFs into NFTs is presented from a historical perspective. Others goals are to describe the biochemical and ultrastructural complexity of authentic PHFs, to assess similarities between authentic and synthetic PHFs, and to discuss recent advances in PHF modeling.

  2. Thermodynamics of Protein Aggregation

    NASA Astrophysics Data System (ADS)

    Osborne, Kenneth L.; Barz, Bogdan; Bachmann, Michael; Strodel, Birgit

    Amyloid protein aggregation characterizes many neurodegenerative disorders, including Alzheimer's, Parkinson's, and Creutz- feldt-Jakob disease. Evidence suggests that amyloid aggregates may share similar aggregation pathways, implying simulation of full-length amyloid proteins is not necessary for understanding amyloid formation. In this study we simulate GNNQQNY, the N-terminal prion-determining domain of the yeast protein Sup35 to investigate the thermodynamics of structural transitions during aggregation. We use a coarse-grained model with replica-exchange molecular dynamics to investigate the association of 3-, 6-, and 12-chain GNNQQNY systems and we determine the aggregation pathway by studying aggregation states of GN- NQQNY. We find that the aggregation of the hydrophilic GNNQQNY sequence is mainly driven by H-bond formation, leading to the formation of /3-sheets from the very beginning of the assembly process. Condensation (aggregation) and ordering take place simultaneously, which is underpinned by the occurrence of a single heat capacity peak only.

  3. Dynamics of 3D isolated thermal filaments

    NASA Astrophysics Data System (ADS)

    Walkden, N. R.; Easy, L.; Militello, F.; Omotani, J. T.

    2016-11-01

    Simulations have been carried out to establish how electron thermal physics, introduced in the form of a dynamic electron temperature, affects isolated filament motion and dynamics in 3D. It is found that thermal effects impact filament motion in two major ways when the pressure perturbation within the filament is supported primarily through a temperature increase as opposed to density: they lead to a strong increase in filament propagation in the bi-normal direction and a significant decrease in net radial propagation. Both effects arise from the temperature dependence of the sheath current which leads to a non-uniform floating potential, with the latter effect supplemented by faster pressure loss. The reduction in radial velocity can only occur when the filament cross-section loses angular symmetry. The behaviour is observed across different filament sizes and suggests that filaments with much larger temperature perturbations than density perturbations are more strongly confined to the near SOL region.

  4. PARTIAL SLINGSHOT RECONNECTION BETWEEN TWO FILAMENTS

    SciTech Connect

    Jiang, Yunchun; Hong, Junchao; Yang, Jiayan; Bi, Yi; Zheng, Ruisheng; Yang, Bo; Li, Haidong; Yang, Dan

    2013-02-10

    We present a rare observation of an interaction between two filaments around AR 11358 and AR 11361 on 2011 December 3 that is strongly suggestive of the occurrence of slingshot reconnection. A small elbow-shaped active-region filament (F12) underwent a failed eruption that brought it into contact with a nearby larger, thicker filament (F34). Accompanied by the appearance of complicated internal structures below the erupting F12, its two legs separated away from each other and then connected into F34. This process led the filaments to change their connectivity to form two newly linked filaments, and one of them showed a clear inverse {gamma}-shape. However, the alteration in the filament connectivity was imperfect since F34 is discernible after the eruption. These observations can be interpreted as a partial slingshot reconnection between two filaments that had unequal axial magnetic flux.

  5. Microwave processing of ceramic oxide filaments

    SciTech Connect

    Vogt, G.J.; Katz, J.D.

    1995-05-01

    The objective of the microwave filament processing project is to develop microwave techniques at 2.45 GHZ to manufacture continuous ceramic oxide filaments. Microwave processing uses the volumetric absorption of microwave power in oxide filament tows to drive off process solvents, to burn out organic binders, and to sinter the dried fibers to produce flexible, high-strength ceramic filaments. The technical goal is to advance filament processing technology by microwave heating more rapidly with less energy and at a lower cost than conventional processing, but with the same quality as conventional processing. The manufacturing goal is to collaborate with the 3M Company, a US manufacturer of ceramic oxide filaments, to evaluate the technology using a prototype filament system and to transfer the microwave technology to the 3M Company.

  6. The stability of viscous liquid filaments

    NASA Astrophysics Data System (ADS)

    Driessen, Theo; Jeurissen, Roger; Wijshoff, Herman; Lohse, Detlef

    2012-11-01

    The stability of liquid filaments is relevant both in industrial applications, such as inkjet printing and atomization, and in nature, where the stability of filaments has a large influence on the final drop size distribution of rain droplets and waterfalls. The liquid filament may either stably collapse into a single droplet, or break up into multiple droplets. Which scenario is realized depends on the viscosity and the aspect ratio of the filament. Here we study the collapse of an axisymmetric liquid filament is analytically and with a numerical model. We find that a long, high viscous filament can only break up due to the Rayleigh-Plateau instability, whereas a low viscous filament can break up due to end-pinching. The theory shows quantitative agreement with recent experimental findings by Castréjon-Pita et al., PRL 108, 074506 (2012).

  7. Filamentation as primitive growth mode?

    NASA Astrophysics Data System (ADS)

    Bigan, Erwan; Steyaert, Jean-Marc; Douady, Stéphane

    2015-12-01

    Osmotic pressure influences cellular shape. In a growing cell, chemical reactions and dilution induce changes in osmolarity, which in turn influence the cellular shape. Using a protocell model relying upon random conservative chemical reaction networks with arbitrary stoichiometry, we find that when the membrane is so flexible that its shape adjusts itself quasi-instantaneously to balance the osmotic pressure, the protocell either grows filamentous or fails to grow. This behavior is consistent with a mathematical proof. This suggests that filamentation may be a primitive growth mode resulting from the simple physical property of balanced osmotic pressure. We also find that growth is favored if some chemical species are only present inside the protocell, but not in the outside growth medium. Such an insulation requires specific chemical schemes. Modern evolved cells such as E. coli meet these requirements through active transport mechanisms such as the phosphotransferase system.

  8. Filamentation as primitive growth mode?

    PubMed

    Bigan, Erwan; Steyaert, Jean-Marc; Douady, Stéphane

    2015-12-01

    Osmotic pressure influences cellular shape. In a growing cell, chemical reactions and dilution induce changes in osmolarity, which in turn influence the cellular shape. Using a protocell model relying upon random conservative chemical reaction networks with arbitrary stoichiometry, we find that when the membrane is so flexible that its shape adjusts itself quasi-instantaneously to balance the osmotic pressure, the protocell either grows filamentous or fails to grow. This behavior is consistent with a mathematical proof. This suggests that filamentation may be a primitive growth mode resulting from the simple physical property of balanced osmotic pressure. We also find that growth is favored if some chemical species are only present inside the protocell, but not in the outside growth medium. Such an insulation requires specific chemical schemes. Modern evolved cells such as E. coli meet these requirements through active transport mechanisms such as the phosphotransferase system. PMID:26718101

  9. Picosecond laser filamentation in air

    NASA Astrophysics Data System (ADS)

    Schmitt-Sody, Andreas; Kurz, Heiko G.; Bergé, Luc; Skupin, Stefan; Polynkin, Pavel

    2016-09-01

    The propagation of intense picosecond laser pulses in air in the presence of strong nonlinear self-action effects and air ionization is investigated experimentally and numerically. The model used for numerical analysis is based on the nonlinear propagator for the optical field coupled to the rate equations for the production of various ionic species and plasma temperature. Our results show that the phenomenon of plasma-driven intensity clamping, which has been paramount in femtosecond laser filamentation, holds for picosecond pulses. Furthermore, the temporal pulse distortions in the picosecond regime are limited and the pulse fluence is also clamped. In focused propagation geometry, a unique feature of picosecond filamentation is the production of a broad, fully ionized air channel, continuous both longitudinally and transversely, which may be instrumental for many applications including laser-guided electrical breakdown of air, channeling microwave beams and air lasing.

  10. UNUSUAL FILAMENTS INSIDE THE UMBRA

    SciTech Connect

    Kleint, L.

    2013-06-10

    We analyze several unusual filamentary structures which appeared in the umbra of one of the sunspots in AR 11302. They do not resemble typical light bridges in morphology or in evolution. We analyze data from SDO/HMI to investigate their temporal evolution, Hinode/SP for photospheric inversions, IBIS for chromospheric imaging, and SDO/AIA for the overlying corona. Photospheric inversions reveal a horizontal, inverse Evershed flow along these structures, which we call umbral filaments. Chromospheric images show brightenings and energy dissipation, while coronal images indicate that bright coronal loops seem to end in these umbral filaments. These rapidly evolving features do not seem to be common, and are possibly related to the high flare-productivity of the active region. Their analysis could help to understand the complex evolution of active regions.

  11. Intermediate Filaments in Caenorhabditis elegans.

    PubMed

    Zuela, Noam; Gruenbaum, Yosef

    2016-01-01

    More than 70 different genes in humans and 12 different genes in Caenorhabditis elegans encode the superfamily of intermediate filament (IF) proteins. In C. elegans, similar to humans, these proteins are expressed in a cell- and tissue-specific manner, can assemble into heteropolymers and into 5-10nm wide filaments that account for the principal structural elements at the nuclear periphery, nucleoplasm, and cytoplasm. At least 5 of the 11 cytoplasmic IFs, as well as the nuclear IF, lamin, are essential. In this chapter, we will include a short review of our current knowledge of both cytoplasmic and nuclear IFs in C. elegans and will describe techniques used for their analyses. PMID:26795488

  12. Mechanics of vimentin intermediate filaments

    NASA Technical Reports Server (NTRS)

    Wang, Ning; Stamenovic, Dimitrijie

    2002-01-01

    It is increasingly evident that the cytoskeleton of living cells plays important roles in mechanical and biological functions of the cells. Here we focus on the contribution of intermediate filaments (IFs) to the mechanical behaviors of living cells. Vimentin, a major structural component of IFs in many cell types, is shown to play an important role in vital mechanical and biological functions such as cell contractility, migration, stiffness, stiffening, and proliferation.

  13. Filament wound rocket motor chambers

    NASA Technical Reports Server (NTRS)

    1976-01-01

    The design, analysis, fabrication and testing of a Kevlar-49/HBRF-55A filament wound chamber is reported. The chamber was fabricated and successfully tested to 80% of the design burst pressure. Results of the data reduction and analysis from the hydrotest indicate that the chamber design and fabrication techniques used for the chamber were adequate and the chamber should perform adequately in a static test.

  14. In vivo formation steps of the hard alpha-keratin intermediate filament along a hair follicle: evidence for structural polymorphism.

    PubMed

    Rafik, Mériem Er; Briki, Fatma; Burghammer, Manfred; Doucet, Jean

    2006-04-01

    Several aspects of the intermediate filaments' molecular architecture remain mysterious despite decades of study. The growth process and the final architecture may depend on the physical, chemical, and biochemical environment. Aiming at clarifying this issue, we have revisited the structure of the human hair follicle by means of X-ray microdiffraction. We conclude that the histology-based growth zones along the follicle are correlated to the fine architecture of the filaments deduced from X-ray microdiffraction. Our analysis reveals the existence of two major polymorph intermediate filament architectures. Just above the bulb, the filaments are characterized by a diameter of 100 Angstroms and a low-density core. The following zone upwards is characterized by the lateral aggregation of the filaments into a compact network of filaments, by a contraction of their diameter (to 75 Angstroms) and by the setting up of a long-range longitudinal ordering. In the upper zone, the small structural change associated with the tissue hardening likely concerns the terminal domains. The architecture of the intermediate filament in the upper zones could be specific to hard alpha-keratin whilst the other architecture found in the lower zone could be representative for intermediate filaments in a different environment.

  15. Regulation and aggregation of intrinsically disordered peptides.

    PubMed

    Levine, Zachary A; Larini, Luca; LaPointe, Nichole E; Feinstein, Stuart C; Shea, Joan-Emma

    2015-03-01

    Intrinsically disordered proteins (IDPs) are a unique class of proteins that have no stable native structure, a feature that allows them to adopt a wide variety of extended and compact conformations that facilitate a large number of vital physiological functions. One of the most well-known IDPs is the microtubule-associated tau protein, which regulates microtubule growth in the nervous system. However, dysfunctions in tau can lead to tau oligomerization, fibril formation, and neurodegenerative disease, including Alzheimer's disease. Using a combination of simulations and experiments, we explore the role of osmolytes in regulating the conformation and aggregation propensities of the R2/wt peptide, a fragment of tau containing the aggregating paired helical filament (PHF6*). We show that the osmolytes urea and trimethylamine N-oxide (TMAO) shift the population of IDP monomer structures, but that no new conformational ensembles emerge. Although urea halts aggregation, TMAO promotes the formation of compact oligomers (including helical oligomers) through a newly proposed mechanism of redistribution of water around the perimeter of the peptide. We put forth a "superposition of ensembles" hypothesis to rationalize the mechanism by which IDP structure and aggregation is regulated in the cell.

  16. Filamentation of Metabolic Enzymes in Saccharomyces cerevisiae.

    PubMed

    Shen, Qing-Ji; Kassim, Hakimi; Huang, Yong; Li, Hui; Zhang, Jing; Li, Guang; Wang, Peng-Ye; Yan, Jun; Ye, Fangfu; Liu, Ji-Long

    2016-06-20

    Compartmentation via filamentation has recently emerged as a novel mechanism for metabolic regulation. In order to identify filament-forming metabolic enzymes systematically, we performed a genome-wide screening of all strains available from an open reading frame-GFP collection in Saccharomyces cerevisiae. We discovered nine novel filament-forming proteins and also confirmed those identified previously. From the 4159 strains, we found 23 proteins, mostly metabolic enzymes, which are capable of forming filaments in vivo. In silico protein-protein interaction analysis suggests that these filament-forming proteins can be clustered into several groups, including translational initiation machinery and glucose and nitrogen metabolic pathways. Using glutamine-utilising enzymes as examples, we found that the culture conditions affect the occurrence and length of the metabolic filaments. Furthermore, we found that two CTP synthases (Ura7p and Ura8p) and two asparagine synthetases (Asn1p and Asn2p) form filaments both in the cytoplasm and in the nucleus. Live imaging analyses suggest that metabolic filaments undergo sub-diffusion. Taken together, our genome-wide screening identifies additional filament-forming proteins in S. cerevisiae and suggests that filamentation of metabolic enzymes is more general than currently appreciated. PMID:27312010

  17. Filamentation of Metabolic Enzymes in Saccharomyces cerevisiae.

    PubMed

    Shen, Qing-Ji; Kassim, Hakimi; Huang, Yong; Li, Hui; Zhang, Jing; Li, Guang; Wang, Peng-Ye; Yan, Jun; Ye, Fangfu; Liu, Ji-Long

    2016-06-20

    Compartmentation via filamentation has recently emerged as a novel mechanism for metabolic regulation. In order to identify filament-forming metabolic enzymes systematically, we performed a genome-wide screening of all strains available from an open reading frame-GFP collection in Saccharomyces cerevisiae. We discovered nine novel filament-forming proteins and also confirmed those identified previously. From the 4159 strains, we found 23 proteins, mostly metabolic enzymes, which are capable of forming filaments in vivo. In silico protein-protein interaction analysis suggests that these filament-forming proteins can be clustered into several groups, including translational initiation machinery and glucose and nitrogen metabolic pathways. Using glutamine-utilising enzymes as examples, we found that the culture conditions affect the occurrence and length of the metabolic filaments. Furthermore, we found that two CTP synthases (Ura7p and Ura8p) and two asparagine synthetases (Asn1p and Asn2p) form filaments both in the cytoplasm and in the nucleus. Live imaging analyses suggest that metabolic filaments undergo sub-diffusion. Taken together, our genome-wide screening identifies additional filament-forming proteins in S. cerevisiae and suggests that filamentation of metabolic enzymes is more general than currently appreciated.

  18. A penny-shaped crack in a filament reinforced matrix. 1: The filament model

    NASA Technical Reports Server (NTRS)

    Erdogan, F.; Pacella, A. H.

    1973-01-01

    The electrostatic problem of a penny-shaped crack in an elastic matrix which reinforced by filaments or fibers perpendicular to the plane of the crack was studied. The elastic filament model was developed for application to evaluation studies of the stress intensity factor along the periphery of the crack, the stresses in the filaments or fibers, and the interface shear between the matrix and the filaments or fibers. The requirements expected of the model are a sufficiently accurate representation of the filament and applicability to the interaction problems involving a cracked elastic continuum with multi-filament reinforcements. The technique for developing the model and numerical examples of it are shown.

  19. Diagnosis of femtosecond plasma filament by channeling microwaves along the filament

    SciTech Connect

    Alshershby, Mostafa; Ren, Yu; Qin, Jiang; Hao, Zuoqiang; Lin, Jingquan

    2013-05-20

    We introduce a simple, fast, and non-intrusive experimental method to obtain the basic parameters of femtosecond laser-generated plasma filament. The method is based on the channeling of microwaves along both a plasma filament and a well-defined conducting wire. By comparing the detected microwaves that propagate along the plasma filament and a copper wire with known conductivity and spatial dimension, the basic parameters of the plasma filament can be easily obtained. As a result of the possibility of channeling microwave radiation along the plasma filament, we were then able to obtain the plasma density distribution along the filament length.

  20. A Case of Filament - Active Region Interaction

    NASA Astrophysics Data System (ADS)

    Dumitrache, C.; Dumitru, L.

    2010-09-01

    We analyze a huge filament observed between 5 and 19 September 2001. In its evolution it is linked to the active region 9612, observed between 7 and 16 September 2001. The filament has a strange morphology and dynamics: starting as two parallel components (A and B), it becomes a double sigmoid filament when a third component (C ) appears linking the other two. An unusual magnetic topology characterizes this evolution: the active region is located between the parallel components. When the third component becomes observable, it links these ones first below the active region. After a spectacular plasma movement registered in filament (A), this one becomes linked to (B) above the active region. In spite of these dramatically changes of the magnetic topology and filament -- active region switch, no CME is observed. Only a few flares occurring in AR9612 are registered and these ones can be seen in the dynamics of the filament as an expression of large scale magnetic reconnections.

  1. Femtosecond Laser Filamentation for Atmospheric Sensing

    PubMed Central

    Xu, Huai Liang; Chin, See Leang

    2011-01-01

    Powerful femtosecond laser pulses propagating in transparent materials result in the formation of self-guided structures called filaments. Such filamentation in air can be controlled to occur at a distance as far as a few kilometers, making it ideally suited for remote sensing of pollutants in the atmosphere. On the one hand, the high intensity inside the filaments can induce the fragmentation of all matters in the path of filaments, resulting in the emission of characteristic fluorescence spectra (fingerprints) from the excited fragments, which can be used for the identification of various substances including chemical and biological species. On the other hand, along with the femtosecond laser filamentation, white-light supercontinuum emission in the infrared to UV range is generated, which can be used as an ideal light source for absorption Lidar. In this paper, we present an overview of recent progress concerning remote sensing of the atmosphere using femtosecond laser filamentation. PMID:22346566

  2. Evolution of Barb Angle and Filament Eruption

    NASA Astrophysics Data System (ADS)

    Su, J. T.; Liu, Y.; Zhang, H. Q.; Kurokawa, H.; Yurchyshyn, V.; Shibata, K.; Bao, X. M.; Wang, G. P.; Li, C.

    2005-09-01

    Hα observations of a quiescent U-shaped filament were obtained at Big Bear Solar Observatory and at Hida Observatory with the Flare Monitoring Telescope. The filament was located in the southern hemisphere on 1998 November 4. We study the evolution of the angle of a barb with respect to the axis of the filament and find the evolution can be divided into two phases: a rise from the acute phase to the obtuse phase and a fall. Thus, this indicates that the chirality of this barb changes with time. Moreover, in the process of evolution, we find that interconnection of the part of the filament bearing the barb with the whole filament became either weakened or strengthened. We impute the final eruption of the filament to the chirality evolution of the barb.

  3. Femtosecond laser filamentation for atmospheric sensing.

    PubMed

    Xu, Huai Liang; Chin, See Leang

    2011-01-01

    Powerful femtosecond laser pulses propagating in transparent materials result in the formation of self-guided structures called filaments. Such filamentation in air can be controlled to occur at a distance as far as a few kilometers, making it ideally suited for remote sensing of pollutants in the atmosphere. On the one hand, the high intensity inside the filaments can induce the fragmentation of all matters in the path of filaments, resulting in the emission of characteristic fluorescence spectra (fingerprints) from the excited fragments, which can be used for the identification of various substances including chemical and biological species. On the other hand, along with the femtosecond laser filamentation, white-light supercontinuum emission in the infrared to UV range is generated, which can be used as an ideal light source for absorption Lidar. In this paper, we present an overview of recent progress concerning remote sensing of the atmosphere using femtosecond laser filamentation. PMID:22346566

  4. Studies on UV filaments in air

    SciTech Connect

    Schwarz, J.; Rambo, P.; Diels, J.C.; Luk, T.S.; Bernstein, A.C.; Cameron, S.M.

    2000-01-05

    UV filaments in air have been examined on the basis of the diameter and length of the filament, the generation of new spectral components, and the ionization by multiphoton processes. There have been numerous observations of filaments at 800 nm. The general perception is that, above a critical power, the beam focuses because nonlinear self-lensing overcomes diffraction. The self-focusing proceeds until an opposing higher order nonlinearity forms a stable balance.

  5. Motion, decay and merging of vortex filaments

    NASA Technical Reports Server (NTRS)

    Liu, C. H.; Ting, L.

    1988-01-01

    The asymptotic solutions of Navier-Stokes equations for vortex filaments of finite strength with small effective vortical cores are summarized. Emphases are placed on the physical meaning and the practical limit to the applicability of the asymptotic solution. Finite-difference solutions of Navier-Stokes equations for the merging of the filament(s) are described. It is focused on the development of the approximate boundary conditions for the computational domain.

  6. Magnetic field generated by current filaments

    NASA Astrophysics Data System (ADS)

    Kimura, Y.

    2014-10-01

    We investigate the magnetic field generated by two straight current filaments using the analogy between steady MHD and Euler flows. Using the Biot-Savart law, we present a dynamical system describing the extension of magnetic lines around the current filaments. It is demonstrated that, if two current filaments are non-parallel, a magnetic line starting near one current goes to infinity by the drifting effect of the other.

  7. Remote electrical arc suppression by laser filamentation.

    PubMed

    Schubert, Elise; Mongin, Denis; Kasparian, Jérôme; Wolf, Jean-Pierre

    2015-11-01

    We investigate the interaction of narrow plasma channels formed in the filamentation of ultrashort laser pulses, with a DC high voltage. The laser filaments prevent electrical arcs by triggering corona that neutralize the high-voltage electrodes. This phenomenon, that relies on the electric field modulation and free electron release around the filament, opens new prospects to lightning and over-voltage mitigation. PMID:26561133

  8. Self-Organization of Treadmilling Filaments

    NASA Astrophysics Data System (ADS)

    Doubrovinski, K.; Kruse, K.

    2007-11-01

    The cytoskeleton is an active network of polar filaments. The activity can lead to the polymerization of filaments at one end and depolymerization at the other. This phenomenon is called treadmilling and is essential for many cellular processes, in particular, the crawling of cells on a substrate. We develop a microscopic theoretical framework for describing systems of treadmilling filaments. We show that such systems can self-organize into structures observed in cell fragments, in particular, asters and moving spots.

  9. Interference of amino-terminal desmin fragments with desmin filament formation.

    PubMed

    Bär, Harald; Sharma, Sarika; Kleiner, Helga; Mücke, Norbert; Zentgraf, Hanswalter; Katus, Hugo A; Aebi, Ueli; Herrmann, Harald

    2009-11-01

    Short polypeptides from intermediate filament (IF) proteins containing one of the two IF-consensus motifs interfere severely with filament assembly in vitro. We now have systematically investigated a series of larger fragments of the muscle-specific IF protein desmin representing entire functional domains such as coil1 or coil 2. "Half molecules" comprising the amino-terminal portion of desmin, such as DesDeltaC240 and the "tagged" derivative Des(ESA)DeltaC244, assembled into large, roundish aggregates already at low ionic strength, DesDeltaC250 formed extended, relatively uniform filaments, whereas DesDeltaC265 and DesDeltaC300 were soluble under these conditions. Surprisingly, all mutant desmin fragments assembled very rapidly into long thick filaments or spacious aggregates when the ionic strength was raised to standard assembly conditions. In contrast, when these desmin mutants were assembled in the presence of wild-type (WT) desmin, their assembly properties were completely changed: The elongation of the two shorter desmin fragments was completely inhibited by WT desmin, whereas DesDeltaC250, DesDeltaC265 and DesDeltaC300 coassembled with desmin into filaments, but these mixed filaments were distinctly disturbed and exhibited a very different phenotype for each mutant. After transfection into fibroblasts and cardiomyocytes, the truncated mutant Des (ESA)DeltaC244 localized largely to the cytoplasm, as revealed by a tag-specific monoclonal antibody, and also partially colocalized there with the collapsed endogenous vimentin and desmin systems indicating its interference with IF-organizing processes. In contrast, in cells without an authentic cytoplasmic IF system such as line SW13, Des(ESA)DeltaC242 entered the nucleus and was deposited in small dot-like structures in chromatin-free spaces without any noticeable effect on nuclear morphology. PMID:19530175

  10. Methods for modeling cytoskeletal and DNA filaments

    NASA Astrophysics Data System (ADS)

    Andrews, Steven S.

    2014-02-01

    This review summarizes the models that researchers use to represent the conformations and dynamics of cytoskeletal and DNA filaments. It focuses on models that address individual filaments in continuous space. Conformation models include the freely jointed, Gaussian, angle-biased chain (ABC), and wormlike chain (WLC) models, of which the first three bend at discrete joints and the last bends continuously. Predictions from the WLC model generally agree well with experiment. Dynamics models include the Rouse, Zimm, stiff rod, dynamic WLC, and reptation models, of which the first four apply to isolated filaments and the last to entangled filaments. Experiments show that the dynamic WLC and reptation models are most accurate. They also show that biological filaments typically experience strong hydrodynamic coupling and/or constrained motion. Computer simulation methods that address filament dynamics typically compute filament segment velocities from local forces using the Langevin equation and then integrate these velocities with explicit or implicit methods; the former are more versatile and the latter are more efficient. Much remains to be discovered in biological filament modeling. In particular, filament dynamics in living cells are not well understood, and current computational methods are too slow and not sufficiently versatile. Although primarily a review, this paper also presents new statistical calculations for the ABC and WLC models. Additionally, it corrects several discrepancies in the literature about bending and torsional persistence length definitions, and their relations to flexural and torsional rigidities.

  11. Flux emergence event underneath a filament

    NASA Astrophysics Data System (ADS)

    Palacios, J.; Cerrato, Y.; Cid, C.; Guerrero, A.; Saiz, E.

    2015-10-01

    Flux emergence phenomena are relevant at different temporal and spatial scales. We have studied a flux emergence region underneath a filament. This filament elevated itself smoothly, and the associated CME reached the Earth. In this study we investigate the size and the amount of flux in the emergence event. The flux emergence site appeared just beneath a filament. The emergence acquired a size of 24 Mm in half a day. The unsigned magnetic flux density from LOS-magnetograms was around 1 kG at its maximum. The transverse field as well as the filament eruption were also analysed.

  12. Observations of an active region filament

    NASA Astrophysics Data System (ADS)

    Zong, W. G.; Tang, Y. H.; Fang, C.; Xu, A. A.

    An active region filament was well observed on September 4, 2002 with THEMIS at the Teide observatory and SOHO/MDI. The full Stokes parameters of the filament were obtained in Hα and FeI 6302 Å lines. Using the data, we have studied the fine structure of the filament and obtained the parameters at the barb endpoints, including intensity, velocity and longitudinal magnetic field. Our results indicate: (a) the Doppler velocities are quiet different at barb endpoints; (b) the longitudinal magnetic fields at the barb endpoints are very weak; (c) there is a strong magnetic field structure under the filament spine.

  13. Probing the Physical Structures of Dense Filaments

    NASA Astrophysics Data System (ADS)

    Li, Di

    2015-08-01

    Filament is a common feature in cosmological structures of various scales, ranging from dark matter cosmic web, galaxy clusters, inter-galactic gas flows, to Galactic ISM clouds. Even within cold dense molecular cores, filaments have been detected. Theories and simulations with (or without) different combination of physical principles, including gravity, thermal balance, turbulence, and magnetic field, can reproduce intriguing images of filaments. The ubiquity of filaments and the similarity in simulated ones make physical parameters, beyond dust column density, a necessity for understanding filament evolution. I report three projects attempting to measure physical parameters of filaments. We derive the volume density of a dense Taurus filament based on several cyanoacetylene transitions observed by GBT and ART. We measure the gas temperature of the OMC 2-3 filament based on combined GBT+VLA ammonia images. We also measured the sub-millimeter polarization vectors along OMC3. These filaments were found to be likely a cylinder-type structure, without dynamic heating, and likely accreting mass along the magnetic field lines.

  14. Assembly of Superparamagnetic Filaments in External Field.

    PubMed

    Wei, Jiachen; Song, Fan; Dobnikar, Jure

    2016-09-13

    We present a theoretical and simulation study of anchored magneto-elastic filaments in external magnetic field. The filaments are composed of a mixture of superparamagnetic and nonmagnetic colloidal beads interlinked with elastic springs. We explore the steady-state structures of filaments with various composition and bending rigidity subject to external magnetic field parallel to the surface. The interplay of elastic and induced magnetic interactions results in a rich phase behavior with morphologies reminiscent of macromolecular folding: bent filaments, loops, sheets, helicoids, and other collapsed structures. Our results provide new insights into the design of hierarchically assembled supramolecular structures with controlled response to external stimuli. PMID:27536958

  15. Deep coronal hole associated with quiescent filament

    NASA Astrophysics Data System (ADS)

    Kesumaningrum, Rasdewita; Herdiwidjaya, Dhani

    2014-03-01

    We present a study of the morphology of quiescent filament observed by H-alpha Solar Telescope at Bosscha Observatory in association with coronal hole observed by Atmospheric Imaging Assembly (AIA) instrument in 193 Å from Solar Dynamics Observatory. H-alpha images were processed by imaging softwares, namely Iris 5.59 and ImageJ, to enhance the signal to noise ratio and to identify the filament features associated with coronal hole. For images observed on October 12, 2011, November 14, 2011 and January 2, 2012, we identified distinct features of coronal holes above the quiescent filaments. This associated coronal holes have filament-like morphology with a thick long thread as it's `spine', defined as Deep Coronal Hole. Because of strong magnetic field of sunspot, these filaments and coronal holes emerged far from active region and lasted for several days. It is interesting as for segmented filament, deep coronal holes above the filaments lasted for a quite long period of time and merged. This association between filament and deep coronal hole can be explained by filament magnetic loop.

  16. Chaperonin filaments: The archaeal cytoskeleton?

    PubMed Central

    Trent, Jonathan D.; Kagawa, Hiromi K.; Yaoi, Takuro; Olle, Eric; Zaluzec, Nestor J.

    1997-01-01

    Chaperonins are high molecular mass double-ring structures composed of 60-kDa protein subunits. In the hyperthermophilic archaeon Sulfolobus shibatae the two chaperonin proteins represent ≈4% of its total protein and have a combined intracellular concentration of >30 mg/ml. At concentrations ≥ 0.5 mg/ml purified chaperonins form filaments in the presence of Mg2+ and nucleotides. Filament formation requires nucleotide binding (not hydrolysis), and occurs at physiological temperatures in biologically relevant buffers, including a buffer made from cell extracts. These observations suggest that chaperonin filaments may exist in vivo and the estimated 4600 chaperonins per cell suggest that such filaments could form an extensive cytostructure. We observed filamentous structures in unfixed, uranyl-acetate-stained S. shibatae cells, which resemble the chaperonin filaments in size and appearance. ImmunoGold (Janssen) labeling using chaperonin antibodies indicated that many chaperonins are associated with insoluble cellular structures and these structures appear to be filamentous in some areas, although they could not be uranyl-acetate-stained. The existence of chaperonin filaments in vivo suggests a mechanism whereby their protein-folding activities can be regulated. More generally, the filaments themselves may play a cytoskeletal role in Archaea. PMID:9144246

  17. Stability and gelation behavior of bovine serum albumin pre-aggregates in the presence of calcium chloride.

    PubMed

    Wu, Hua; Arosio, Paolo; Podolskaya, Olga Gennadievna; Wei, Dan; Morbidelli, Massimo

    2012-04-14

    We study, using wide-angle and small-angle light scattering techniques, the stability and aggregation/gelation behaviors of denatured filamentous bovine serum albumin pre-aggregates (BSA-PAs), induced by CaCl(2). It is observed that transparent filamentous gels can be formed not only at low CaCl(2) concentrations but also at high CaCl(2) concentrations, while turbid gels are obtained at intermediate CaCl(2) concentrations. Although the filamentous gels at low CaCl(2) concentrations and the turbid gels at intermediate CaCl(2) concentrations are consistent with the literature observations, the filamentous gels at high CaCl(2) concentrations have to be explained by different mechanisms. The latter is attributed to the repulsive hydration interactions originating from increased surface dipoles generated by counterion binding. Since such surface dipole-induced hydration is very short-range and occurs mainly on charged or polar patches of proteins (thus protected from aggregation), the aggregation of the filamentous BSA-PAs at hydrophobic patches at the two ends is still possible, leading to formation of the filamentous gels.

  18. Force-Induced Dynamical Properties of Multiple Cytoskeletal Filaments Are Distinct from that of Single Filaments

    PubMed Central

    Das, Dipjyoti; Das, Dibyendu; Padinhateeri, Ranjith

    2014-01-01

    How cytoskeletal filaments collectively undergo growth and shrinkage is an intriguing question. Collective properties of multiple bio-filaments (actin or microtubules) undergoing hydrolysis have not been studied extensively earlier within simple theoretical frameworks. In this paper, we study the collective dynamical properties of multiple filaments under force, and demonstrate the distinct properties of a multi-filament system in comparison to a single filament. Comparing stochastic simulation results with recent experimental data, we show that multi-filament collective catastrophes are slower than catastrophes of single filaments. Our study also shows further distinctions as follows: (i) force-dependence of the cap-size distribution of multiple filaments are quantitatively different from that of single filaments, (ii) the diffusion constant associated with the system length fluctuations is distinct for multiple filaments, and (iii) switching dynamics of multiple filaments between capped and uncapped states and the fluctuations therein are also distinct. We build a unified picture by establishing interconnections among all these collective phenomena. Additionally, we show that the collapse times during catastrophes can be sharp indicators of collective stall forces exceeding the additive contributions of single filaments. PMID:25531397

  19. Mutation-Specific Effects on Thin Filament Length in Thin Filament Myopathy

    PubMed Central

    de Winter, Josine M.; Joureau, Barbara; Lee, Eun-Jeong; Kiss, Balázs; Yuen, Michaela; Gupta, Vandana A.; Pappas, Christopher T.; Gregorio, Carol C.; Stienen, Ger J. M.; Edvardson, Simon; Wallgren-Pettersson, Carina; Lehtokari, Vilma-Lotta; Pelin, Katarina; Malfatti, Edoardo; Romero, Norma B.; van Engelen, Baziel G.; Voermans, Nicol C.; Donkervoort, Sandra; Bönnemann, C. G.; Clarke, Nigel F.; Beggs, Alan H.; Granzier, Henk; Ottenheijm, Coen A. C.

    2016-01-01

    Objective Thin filament myopathies are among the most common nondystrophic congenital muscular disorders, and are caused by mutations in genes encoding proteins that are associated with the skeletal muscle thin filament. Mechanisms underlying muscle weakness are poorly understood, but might involve the length of the thin filament, an important determinant of force generation. Methods We investigated the sarcomere length-dependence of force, a functional assay that provides insights into the contractile strength of muscle fibers as well as the length of the thin filaments, in muscle fibers from 51 patients with thin filament myopathy caused by mutations in NEB, ACTA1, TPM2, TPM3, TNNT1, KBTBD13, KLHL40, and KLHL41. Results Lower force generation was observed in muscle fibers from patients of all genotypes. In a subset of patients who harbor mutations in NEB and ACTA1, the lower force was associated with downward shifted force–sarcomere length relations, indicative of shorter thin filaments. Confocal microscopy confirmed shorter thin filaments in muscle fibers of these patients. A conditional Neb knockout mouse model, which recapitulates thin filament myopathy, revealed a compensatory mechanism; the lower force generation that was associated with shorter thin filaments was compensated for by increasing the number of sarcomeres in series. This allowed muscle fibers to operate at a shorter sarcomere length and maintain optimal thin–thick filament overlap. Interpretation These findings might provide a novel direction for the development of therapeutic strategies for thin filament myopathy patients with shortened thin filament lengths. PMID:27074222

  20. Intermediate filaments of the lung.

    PubMed

    Yi, Hayan; Ku, Nam-On

    2013-07-01

    Intermediate filaments (IF), a subfamily of the cytoskeletal filaments, provide structural support to cells. Human diseases related to mutations in IF proteins in which their tissue-specific expression is reflected have been found in a broad range of patients. The properties of identified IF mutants are well-studied in vitro in cultured cells and in vivo using transgenic mice expressing IF mutants. However, the association of IF proteins with diseases of the lung is not fully studied yet. Epithelial cells in normal lung express vimentin and various keratins, and the patterns of their expression are altered depending on the progression of the lung diseases. A growing number of studies performed in alveolar epithelial cells demonstrated IF involvement in disease-related aspects including their usefulness as tumor marker, in epithelial-mesenchymal transition and cell migration. However, the lung disease-associated IF functions in animal models are poorly understood, and IF mutations associated with lung diseases in humans have not been reported. In this review, we summarize recent studies that show the significance of IF proteins in lung epithelial cells. Understanding these aspects is an important prerequisite for further investigations on the role of lung IF in animal models and human lung diseases.

  1. Filamentation with nonlinear Bessel vortices.

    PubMed

    Jukna, V; Milián, C; Xie, C; Itina, T; Dudley, J; Courvoisier, F; Couairon, A

    2014-10-20

    We present a new type of ring-shaped filaments featured by stationary nonlinear high-order Bessel solutions to the laser beam propagation equation. Two different regimes are identified by direct numerical simulations of the nonlinear propagation of axicon focused Gaussian beams carrying helicity in a Kerr medium with multiphoton absorption: the stable nonlinear propagation regime corresponds to a slow beam reshaping into one of the stationary nonlinear high-order Bessel solutions, called nonlinear Bessel vortices. The region of existence of nonlinear Bessel vortices is found semi-analytically. The influence of the Kerr nonlinearity and nonlinear losses on the beam shape is presented. Direct numerical simulations highlight the role of attractors played by nonlinear Bessel vortices in the stable propagation regime. Large input powers or small cone angles lead to the unstable propagation regime where nonlinear Bessel vortices break up into an helical multiple filament pattern or a more irregular structure. Nonlinear Bessel vortices are shown to be sufficiently intense to generate a ring-shaped filamentary ionized channel in the medium which is foreseen as opening the way to novel applications in laser material processing of transparent dielectrics. PMID:25401574

  2. A Statistical Study of Solar Filament Eruptions

    NASA Astrophysics Data System (ADS)

    Schanche, Nicole; Aggarwal, Ashna; Reeves, Kathy; Kempton, Dustin James; Angryk, Rafal

    2016-05-01

    Solar filaments are cool, dark channels of partially-ionized plasma that lie above the chromosphere. Their structure follows the neutral line between local regions of opposite magnetic polarity. Previous research (e.g. Schmieder et al. 2013, McCauley et al. 2015) has shown a positive correlation (70-80%) between the occurrence of filament eruptions and coronal mass ejections (CME’s). In this study, we attempt to use properties of the filament in order to predict whether or not a given filament will erupt. This prediction would help to better predict the occurrence of an oncoming CME. To track the evolution of a filament over time, a spatio-temporal algorithm that groups separate filament instances from the Heliophysics Event Knowledgebase (HEK) into filament tracks was developed. Filament features from the HEK metadata, such as length, chirality, and tilt are then combined with other physical features, such as the overlying decay index for two sets of filaments tracks - those that erupt and those that remain bound. Using statistical methods such as the Kolmogrov-Smirnov test and a Random Forest Classifier, we determine the effectiveness of the combined features in prediction. We conclude that there is significant overlap between the properties of filaments that erupt and those that do not, leading to predictions only ~5-10% above chance. However, the changes in features, such as a change in the filament's length over time, were determined to have the highest predictive power. We discuss the possible physical connections with the change in these features."This project has been supported by funding from the Division of Advanced Cyberinfrastructure within the Directorate for Computer and Information Science and Engineering, the Division of Astronomical Sciences within the Directorate for Mathematical and Physical Sciences, and the Division of Atmospheric and Geospace Sciences within the Directorate for Geosciences, under NSF award #1443061.”

  3. Stability and Reformation of Partially Eruptive Filament

    NASA Astrophysics Data System (ADS)

    Joshi, Navin Chandra; Prasad Choudhary, Debi; Chandra, Ramesh; Srivastava, Abhishek K.; Dwivedi, B. N.; Kayshap, Pradeep; Filippov, Boris; Uddin, Wahab

    We present an observation of the confined partial filament eruption on 4 August 2012 which later exhibits a rapid reformation along the same magnetic channel within ≈2 hours. We used BBSO and GONG Halpha as well as SDO AIA 171 Å observations to study the filament properties and its kinematics. SDO/AIA observations over the disk are used to study at coronal temperature the plasma dynamics associated with the filament. STEREO/SECCHI provides the limb observations of the filament dynamics. On the basis of the filament internal fine structure as evident in the Halpha observations and its position relative to the photospheric magnetic fields, it is found that the filament chirality is sinistral. On the other hand, the activated enveloping flux rope shows right-handed twist in the SDO/AIA 171 Å observations. Therefore, this dynamic event exhibits one-to-one correspondence between the filament chirality (sinistral) and the enveloping flux rope helicity (positive). Filament plasma goes into dynamic motion at ≈11:20 UT from its middle part towards the north-west direction with an average speed of ≈100 km s(-1) . Brightening underneath the eruptive part of the filament shows the most likely signature of low atmospheric reconnection. After traveling a distance of around ≈215 Mm towards north-west, the cool filament plasma stops and returns back at ≈12:00 UT towards its eastern foot point with the speed of ≈60 km s(-1) . We calculated the coronal magnetic field decay index (n) near the flux rope. Using this estimation, we conjecture that the filament lies within the stability domain n <1, which is the cause of its stability and possibility of prompt reformation.

  4. Growth of filaments and saturation of the filamentation instability

    SciTech Connect

    Gedalin, M.; Medvedev, M.; Spitkovsky, A.; Krasnoselskikh, V.; Vaivads, A.; Perri, S.

    2010-03-15

    The filamentation instability of counterstreaming beams is a nonresonant hydrodynamic-type instability whose growth rate is a smooth function of the wavelength (scale). As a result, perturbations with all unstable wavelengths develop, and the growth saturates due to the saturation of available current. For a given scale, the magnetic field at saturation is proportional to the scale. As a result, the instability develops in a nearly linear regime, where the unstable modes stop growing as soon as the saturation of the corresponding wavelength is reached. At each moment there exists a dominant scale of the magnetic field which is the scale that reached saturation at this particular time. The smaller scales do not disappear and can be easily distinguished in the current structure. The overall growth of the instability stops when the loss of the streaming ion energy because of deceleration is comparable to the initial ion energy.

  5. Aggregations in Flatworms.

    ERIC Educational Resources Information Center

    Liffen, C. L.; Hunter, M.

    1980-01-01

    Described is a school project to investigate aggregations in flatworms which may be influenced by light intensity, temperature, and some form of chemical stimulus released by already aggregating flatworms. Such investigations could be adopted to suit many educational levels of science laboratory activities. (DS)

  6. One Half Million Mile Solar Filament

    NASA Video Gallery

    NASA’s Solar Dynamics Observatory (SDO) captures a very long, whip-like solar filament extending over half a million miles in a long arc above the sun’s surface. Filaments are cooler clouds of ...

  7. A First Approach to Filament Dynamics

    ERIC Educational Resources Information Center

    Silva, P. E. S.; de Abreu, F. Vistulo; Simoes, R.; Dias, R. G.

    2010-01-01

    Modelling elastic filament dynamics is a topic of high interest due to the wide range of applications. However, it has reached a high level of complexity in the literature, making it unaccessible to a beginner. In this paper we explain the main steps involved in the computational modelling of the dynamics of an elastic filament. We first derive…

  8. Process for making silver metal filaments

    SciTech Connect

    Bamberger, C.E.

    1998-04-01

    This invention relates to a process for making filaments of metal compounds and more particularly to a process for making silver metal filaments. The United States Government has rights to this invention pursuant to Contract No. DE-AC05-8421400 with Lockheed Martin Energy Systems, Inc. awarded by the US Department of Energy.

  9. Lamp automatically switches to new filament on burnout

    NASA Technical Reports Server (NTRS)

    Ingle, W. B.

    1966-01-01

    Lamp with primary and secondary filaments has a means for automatic switching to the secondary filament at primary filament burnout. Lamp failures and resultant expenses during oscillograph printing are appreciably reduced.

  10. Enigmatic reticulated filaments in subsurface granite.

    PubMed

    Miller, A Z; Hernández-Mariné, M; Jurado, V; Dionísio, A; Barquinha, P; Fortunato, E; Afonso, M J; Chaminé, H I; Saiz-Jimenez, C

    2012-12-01

    In the last few years, geomicrobiologists have focused their researches on the nature and origin of enigmatic reticulated filaments reported in modern and fossil samples from limestone caves and basalt lava tubes. Researchers have posed questions on these filaments concerning their nature, origin, chemistry, morphology, mode of formation and growth. A tentative microbial origin has been elusive since these filaments are found as hollow tubular sheaths and could not be affiliated to any known microorganism. We describe the presence of similar structures in a 16th century granite tunnel in Porto, Northwest Portugal. The reticulated filaments we identify exhibit fine geometry surface ornamentation formed by cross-linked Mn-rich nanofibres, surrounded by a large amount of extracellular polymeric substances. Within these Mn-rich filaments we report for the first time the occurrence of microbial cells. PMID:23760930

  11. Enigmatic reticulated filaments in subsurface granite.

    PubMed

    Miller, A Z; Hernández-Mariné, M; Jurado, V; Dionísio, A; Barquinha, P; Fortunato, E; Afonso, M J; Chaminé, H I; Saiz-Jimenez, C

    2012-12-01

    In the last few years, geomicrobiologists have focused their researches on the nature and origin of enigmatic reticulated filaments reported in modern and fossil samples from limestone caves and basalt lava tubes. Researchers have posed questions on these filaments concerning their nature, origin, chemistry, morphology, mode of formation and growth. A tentative microbial origin has been elusive since these filaments are found as hollow tubular sheaths and could not be affiliated to any known microorganism. We describe the presence of similar structures in a 16th century granite tunnel in Porto, Northwest Portugal. The reticulated filaments we identify exhibit fine geometry surface ornamentation formed by cross-linked Mn-rich nanofibres, surrounded by a large amount of extracellular polymeric substances. Within these Mn-rich filaments we report for the first time the occurrence of microbial cells.

  12. Quantifying protein diffusion and capture on filaments.

    PubMed

    Reithmann, Emanuel; Reese, Louis; Frey, Erwin

    2015-02-17

    The functional relevance of regulating proteins is often limited to specific binding sites such as the ends of microtubules or actin-filaments. A localization of proteins on these functional sites is of great importance. We present a quantitative theory for a diffusion and capture process, where proteins diffuse on a filament and stop diffusing when reaching the filament's end. It is found that end-association after one-dimensional diffusion is the main source for tip-localization of such proteins. As a consequence, diffusion and capture is highly efficient in enhancing the reaction velocity of enzymatic reactions, where proteins and filament ends are to each other as enzyme and substrate. We show that the reaction velocity can effectively be described within a Michaelis-Menten framework. Together, one-dimensional diffusion and capture beats the (three-dimensional) Smoluchowski diffusion limit for the rate of protein association to filament ends.

  13. Epithelial Intermediate Filaments: Guardians against Microbial Infection?

    PubMed Central

    Geisler, Florian; Leube, Rudolf E.

    2016-01-01

    Intermediate filaments are abundant cytoskeletal components of epithelial tissues. They have been implicated in overall stress protection. A hitherto poorly investigated area of research is the function of intermediate filaments as a barrier to microbial infection. This review summarizes the accumulating knowledge about this interaction. It first emphasizes the unique spatial organization of the keratin intermediate filament cytoskeleton in different epithelial tissues to protect the organism against microbial insults. We then present examples of direct interaction between viral, bacterial, and parasitic proteins and the intermediate filament system and describe how this affects the microbe-host interaction by modulating the epithelial cytoskeleton, the progression of infection, and host response. These observations not only provide novel insights into the dynamics and function of intermediate filaments but also indicate future avenues to combat microbial infection. PMID:27355965

  14. F-actin binding regions on the androgen receptor and huntingtin increase aggregation and alter aggregate characteristics.

    PubMed

    Angeli, Suzanne; Shao, Jieya; Diamond, Marc I

    2010-01-01

    Protein aggregation is associated with neurodegeneration. Polyglutamine expansion diseases such as spinobulbar muscular atrophy and Huntington disease feature proteins that are destabilized by an expanded polyglutamine tract in their N-termini. It has previously been reported that intracellular aggregation of these target proteins, the androgen receptor (AR) and huntingtin (Htt), is modulated by actin-regulatory pathways. Sequences that flank the polyglutamine tract of AR and Htt might influence protein aggregation and toxicity through protein-protein interactions, but this has not been studied in detail. Here we have evaluated an N-terminal 127 amino acid fragment of AR and Htt exon 1. The first 50 amino acids of ARN127 and the first 14 amino acids of Htt exon 1 mediate binding to filamentous actin in vitro. Deletion of these actin-binding regions renders the polyglutamine-expanded forms of ARN127 and Htt exon 1 less aggregation-prone, and increases the SDS-solubility of aggregates that do form. These regions thus appear to alter the aggregation frequency and type of polyglutamine-induced aggregation. These findings highlight the importance of flanking sequences in determining the propensity of unstable proteins to misfold. PMID:20140226

  15. Particles trajectories in magnetic filaments

    SciTech Connect

    Bret, A.

    2015-07-15

    The motion of a particle in a spatially harmonic magnetic field is a basic problem involved, for example, in the mechanism of formation of a collisionless shock. In such settings, it is generally reasoned that particles entering a Weibel generated turbulence are trapped inside it, provided their Larmor radius in the peak field is smaller than the field coherence length. The goal of this work is to put this heuristic conclusion on firm ground by studying, both analytically and numerically, such motion. A toy model is analyzed, consisting of a relativistic particle entering a region of space occupied by a spatially harmonic field. The particle penetrates the magnetic structure in a direction aligned with the magnetic filaments. Although the conclusions are not trivial, the main result is confirmed.

  16. The myosin filament XIV backbone structure.

    PubMed Central

    Ashton, F T; Weisel, J; Pepe, F A

    1992-01-01

    The substructure of the thick filaments of chemically skinned chicken pectoralis muscle was investigated by electron microscopy. Images of transverse sections of the myosin filaments were determined to have threefold symmetry by cross-correlation analysis, which gives an unbiased determination of the rotational symmetry of the images. Resolution, using the phase residual test (Frank et al. 1981. Science [Wash. DC]. 214:1353-1355), was found to be between 3.2 and 3.6 nm. Three arrangements of nine subfilaments in the backbone were found in all regions of the filament at ionic strengths of 20 and 200 mM. In the average images of two of these, there were three dense central subfilaments and three pairs of subfilaments on the surface of the thick filament. In the average image of the third arrangement, all of the protein mass of the nine subfilaments was on the surface of the filament with three of them showing less variation in position than the others. A fourth arrangement appearing to be transitional between two of these was seen often at 200 mM ionic strength and only rarely at 20 mM. On average, the myosin subfilaments were parallel to the long axis of the filament. The different arrangements of subfilaments appear to be randomly distributed among the filaments in a transverse section of the A-band. Relative rotational orientations with respect to the hexagonal filament lattice, using the three densest subfilaments as reference showed a major clustering (32%) of filaments within one 10 degrees spread, a lesser clustering (15%) at 90 degrees to the first, and the remainder scattered thinly over the rest of the 120 degrees range. There was no obvious pattern of distribution of the two predominant orientations that could define a superlattice in the filament lattice. Images FIGURE 2 FIGURE 6 FIGURE 8 PMID:1617136

  17. Secondary nucleating sequences affect kinetics and thermodynamics of tau aggregation.

    PubMed

    Moore, Christopher L; Huang, Michael H; Robbennolt, Shauna A; Voss, Kellen R; Combs, Benjamin; Gamblin, T Chris; Goux, Warren J

    2011-12-20

    Tau protein was scanned for highly amyloidogenic sequences in amphiphilic motifs (X)(n)Z, Z(X)(n)Z (n ≥ 2), or (XZ)(n) (n ≥ 2), where X is a hydrophobic residue and Z is a charged or polar residue. N-Acetyl peptides homologous to these sequences were used to study aggregation. Transmission electron microscopy (TEM) showed seven peptides, in addition to well-known primary nucleating sequences Ac(275)VQIINK (AcPHF6*) and Ac(306)VQIVYK (AcPHF6), formed fibers, tubes, ribbons, or rolled sheets. Of the peptides shown by TEM to form amyloid, Ac(10)VME, AcPHF6*, Ac(375)KLTFR, and Ac(393)VYK were found to enhance the fraction of β-structure of AcPHF6 formed at equilibrium, and Ac(375)KLTFR was found to inhibit AcPHF6 and AcPHF6* aggregation kinetics in a dose-dependent manner, consistent with its participation in a hybrid steric zipper model. Single site mutants were generated which transformed predicted amyloidogenic sequences in tau into non-amyloidogenic ones. A M11K mutant had fewer filaments and showed a decrease in aggregation kinetics and an increased lag time compared to wild-type tau, while a F378K mutant showed significantly more filaments. Our results infer that sequences throughout tau, in addition to PHF6 and PHF6*, can seed amyloid formation or affect aggregation kinetics or thermodynamics.

  18. Conductive Anodic Filament (CAF) Formation

    NASA Astrophysics Data System (ADS)

    Caputo, Antonio

    Conductive anodic filament (CAF) is a failure mode in printed wiring boards (PWBs) which occurs under high humidity and high voltage gradient conditions. The filament, a copper salt, grows from anode to cathode along the epoxy-glass interface. Ready and Turbini (2000) identified this copper salt as the Cu 2(OH)3Cl, atacamite compound. This work has investigated the influence of polyethylene glycol (PEG) and polyethylene propylene glycol (PEPG) fluxing agents on the chemical nature of CAF. For coupons processed with PEPG flux, with and without chloride, a copper-chloride containing compound was formed in the polymer matrix. This compound was characterized using x-ray photoelectron spectroscopy (XPS) as CuCl and an electrochemical mechanism for the formation of the chloride-containing CAF has been proposed. For PEG flux, with and without chloride, it has been shown that CAF only formed, but no copper containing compound formed in the matrix. It appears for PEG fluxed coupons, a PEG-Cu-Cl complex forms, binds the available Cu and acts as a barrier to the formation of CuCl in the polymer matrix. Meeker and Lu Valle (1995) have previously proposed that CAF failure is best represented by two competing reactions -- the formation of a copper chloride corrosion compound (now identified as Cu2(OH)3Cl) and the formation of innocuous trapped chlorine compounds. Since no evidence of any trapped chloride compounds has been found, we propose that the formation of CAF is best represented by a single non-reversible reaction. For coupons processed with a high bromide-containing flux, bromide containing CAF was created and characterized using transmission electron microscopy (TEM) to be Cu2(OH)3Br. In addition, a copper-containing compound was formed in the polymer matrix and characterized using XPS as CuBr. An electrochemical mechanism for the formation of bromide-containing CAF has been proposed based on the XPS data.

  19. Filament Activation in Response to Magnetic Flux Emergence and Cancellation in Filament Channels

    NASA Astrophysics Data System (ADS)

    Li, Ting; Zhang, Jun; Ji, Haisheng

    2015-06-01

    We conducted a comparative analysis of two filaments that showed a quite different activation in response to the flux emergence within the filament channels. The observations from the Solar Dynamics Observatory (SDO) and Global Oscillation Network Group (GONG) were made to analyze the two filaments on 2013 August 17 - 20 (SOL2013-08-17) and September 29 (SOL2013-09-29). The first event showed that the main body of the filament was separated into two parts when an active region (AR) emerged with a maximum magnetic flux of about 6.4×1021 Mx underlying the filament. The close neighborhood and common direction of the bright threads in the filament and the open AR fan loops suggest a similar magnetic connectivity of these two flux systems. The equilibrium of the filament was not destroyed three days after the start of the emergence of the AR. To our knowledge, similar observations have never been reported before. In the second event, the emerging flux occurred nearby a barb of the filament with a maximum magnetic flux of 4.2×1020 Mx, about one order of magnitude lower than that of the first event. Two patches of parasitic polarity in the vicinity of the barb merged, then cancelled with nearby network fields. About 20 hours after the onset of the emergence, the filament erupted. Our findings imply that the location of emerging flux within the filament channel is probably crucial to filament evolution. If the flux emergence appears nearby the barbs, it is highly likely that the emerging flux and the filament magnetic fields will cancel, which may lead to the eruption of the filament. The comparison of the two events shows that the emergence of a small AR may still not be enough to disrupt the stability of a filament system, and the actual eruption only occurs after the flux cancellation sets in.

  20. The invertebrate myosin filament: subfilament arrangement of the solid filaments of insect flight muscles.

    PubMed Central

    Beinbrech, G; Ashton, F T; Pepe, F A

    1992-01-01

    Transverse sections (approximately 140 nm thick) of solid myosin filaments of the flight muscles of the fleshfly, Phormia terrae-novae, the honey bee, Apis mellifica, and the waterbug, Lethocerus uhleri, were photographed in a JEM model 200A electron microscope at 200 kV. The images were digitized and computer processed by rotational filtering. In each of these filaments it was found that the symmetry of the core and the wall was not the same. The power spectra of the images showed sixfold symmetry for the wall and threefold symmetry for the core of the filaments. The images of the filaments in each muscle were superimposed according to the sixfold center of the wall. These averaged images for all three muscles showed six pairs of subunits in the wall similar to those found in the wall of tubular filaments. From serial sections of the fleshfly filaments, we conclude that the subunits in the wall of the filaments represent subfilaments essentially parallel to the long axis of the filament. In each muscle there are additional subunits in the core, closely related to the subunits in the wall. Evaluation of serial sections through fleshfly filaments suggests that the relationship of the three subunits observed in the core to those in the wall varies along the length of the filaments. In waterbug filaments there are three dense and three less dense subunits for a total of six all closely related to the wall. Bee filaments have three subunits related to the wall and three subunits located eccentrically in the core of the filaments. The presence of core subunits can be related to the paramyosin content of the filaments. Images FIGURE 1 FIGURE 3 FIGURE 4 FIGURE 5 FIGURE 7 FIGURE 9 FIGURE 12 PMID:1617135

  1. Unwinding motion of a twisted active region filament

    SciTech Connect

    Yan, X. L.; Xue, Z. K.; Kong, D. F.; Liu, J. H.; Xu, C. L.

    2014-12-10

    To better understand the structures of active region filaments and the eruption process, we study an active region filament eruption in active region NOAA 11082 in detail on 2010 June 22. Before the filament eruption, the opposite unidirectional material flows appeared in succession along the spine of the filament. The rising of the filament triggered two B-class flares at the upper part of the filament. As the bright material was injected into the filament from the sites of the flares, the filament exhibited a rapid uplift accompanying the counterclockwise rotation of the filament body. From the expansion of the filament, we can see that the filament consisted of twisted magnetic field lines. The total twist of the filament is at least 5π obtained by using a time slice method. According to the morphology change during the filament eruption, it is found that the active region filament was a twisted flux rope and its unwinding motion was like a solar tornado. We also find that there was a continuous magnetic helicity injection before and during the filament eruption. It is confirmed that magnetic helicity can be transferred from the photosphere to the filament. Using the extrapolated potential fields, the average decay index of the background magnetic fields over the filament is 0.91. Consequently, these findings imply that the mechanism of solar filament eruption could be due to the kink instability and magnetic helicity accumulation.

  2. Automatic Detect and Trace of Solar Filaments

    NASA Astrophysics Data System (ADS)

    Fang, Cheng; Chen, P. F.; Tang, Yu-hua; Hao, Qi; Guo, Yang

    We developed a series of methods to automatically detect and trace solar filaments in solar Hα images. The programs are able to not only recognize filaments and determine their properties, such as the position, the area and other relevant parameters, but also to trace the daily evolution of the filaments. For solar full disk Hα images, the method consists of three parts: first, preprocessing is applied to correct the original images; second, the Canny edge-detection method is used to detect the filaments; third, filament properties are recognized through the morphological operators. For each Hα filament and its barb features, we introduced the unweighted undirected graph concept and adopted Dijkstra shortest-path algorithm to recognize the filament spine; then, using polarity inversion line shift method for measuring the polarities in both sides of the filament to determine the filament axis chirality; finally, employing connected components labeling method to identify the barbs and calculating the angle between each barb and spine to indicate the barb chirality. Our algorithms are applied to the observations from varied observatories, including the Optical & Near Infrared Solar Eruption Tracer (ONSET) in Nanjing University, Mauna Loa Solar Observatory (MLSO) and Big Bear Solar Observatory (BBSO). The programs are demonstrated to be effective and efficient. We used our method to automatically process and analyze 3470 images obtained by MLSO from January 1998 to December 2009, and a butterfly diagram of filaments is obtained. It shows that the latitudinal migration of solar filaments has three trends in the Solar Cycle 23: The drift velocity was fast from 1998 to the solar maximum; after the solar maximum, it became relatively slow and after 2006, the migration became divergent, signifying the solar minimum. About 60% filaments with the latitudes larger than 50 degree migrate towards the Polar Regions with relatively high velocities, and the latitudinal migrating

  3. Aggregate and the environment

    USGS Publications Warehouse

    Langer, William H.; Drew, Lawrence J.; Sachs, J.S.

    2004-01-01

    This book is designed to help you understand our aggregate resources-their importance, where they come from, how they are processed for our use, the environmental concerns related to their mining and processing, how those concerns are addressed, and the policies and regulations designed to safeguard workers, neighbors, and the environment from the negative impacts of aggregate mining. We hope this understanding will help prepare you to be involved in decisions that need to be made-individually and as a society-to be good stewards of our aggregate resources and our living planet.

  4. Filamentation of Campylobacter in broth cultures

    PubMed Central

    Ghaffar, Nacheervan M.; Connerton, Phillippa L.; Connerton, Ian F.

    2015-01-01

    The transition from rod to filamentous cell morphology has been identified as a response to stressful conditions in many bacterial species and has been ascribed to confer certain survival advantages. Filamentation of Campylobacter jejuni was demonstrated to occur spontaneously on entry in to stationary phase distinguishing it from many other bacteria where a reduction in size is more common. The aim of this study was to investigate the cues that give rise to filamentation of C. jejuni and C. coli and gain insights into the process. Using minimal medium, augmentation of filamentation occurred and it was observed that this morphological change was wide spread amongst C. jejuni strains tested but was not universal in C. coli strains. Filamentation did not appear to be due to release of diffusible molecules, toxic metabolites, or be in response to oxidative stress in the medium. Separated filaments exhibited greater intracellular ATP contents (2.66 to 17.4 fg) than spiral forms (0.99 to 1.7 fg) and showed enhanced survival in water at 4 and 37°C compared to spiral cells. These observations support the conclusion that the filaments are adapted to survive extra-intestinal environments. Differences in cell morphology and physiology need to be considered in the context of the design of experimental studies and the methods adopted for the isolation of campylobacters from food, clinical, and environmental sources. PMID:26175723

  5. Automatic Solar Filament Segmentation and Characterization

    NASA Astrophysics Data System (ADS)

    Yuan, Y.; Shih, F. Y.; Jing, J.; Wang, H.; Chae, J.

    2011-08-01

    This paper presents a generic method to automatically segment and characterize solar filaments from various Hα full-disk solar images, obtained by different solar observatories, with different dynamic ranges and statistical properties. First, a cascading Hough circle detector is designed to find the center location and radius of the solar disks. Second, polynomial surface fitting is adopted to correct unbalanced luminance. Third, an adaptive thresholding method is put forward to segment solar filaments. Finally, for each piece of a solar filament, its centroid location, area, and length are characterized, in which morphological thinning and graph theory are used for identifying the main skeletons of filaments. To test the performance of the proposed methods, a dataset composed of 125 Hα images is considered. These images were obtained by four solar observatories from January 2000 to May 2010, one image per month. Experimental results show that the accuracy rate is above 95% as measured by filament number and above 99% as measured by filament area, indicating that only a few tiny filaments are not detected.

  6. Single turnovers of fluorescent ATP bound to bipolar myosin filament during actin filaments sliding

    PubMed Central

    Maruta, Takahiro; Kobatake, Takahiro; Okubo, Hiroyuki; Chaen, Shigeru

    2013-01-01

    The nucleotide turnover rates of bipolar myosin thick filament along which actin filament slides were measured by the displacement of prebound fluorescent ATP analog 2′(3′)-O-[N-[2-[(Cy3)]amindo]ethyl] carbamoyl]-adenosine 5′ triphosphate (Cy3-EDA-ATP) upon flash photolysis of caged ATP. The fluorescence of the thick filament where actin filament slides decayed with two exponential processes. The slower rate constant was the same as that without actin filament. Along bipolar myosin thick filament, actin filaments slide at a fast speed towards the central bare zone (forward), but more slowly away from the bare zone (backward). The displacement rate constant of fluorescent ATP from the myosin filament where actin filament moved forward was 5.0 s−1, whereas the rate constant where the actin filament slid backward was 1.7 s−1. These findings suggest that the slow ADP release rate is responsible for the slow backward sliding movement. PMID:27493536

  7. Filamentous Biopolymers on Surfaces: Atomic Force Microscopy Images Compared with Brownian Dynamics Simulation of Filament Deposition

    PubMed Central

    Mücke, Norbert; Klenin, Konstantin; Kirmse, Robert; Bussiek, Malte; Herrmann, Harald; Hafner, Mathias; Langowski, Jörg

    2009-01-01

    Nanomechanical properties of filamentous biopolymers, such as the persistence length, may be determined from two-dimensional images of molecules immobilized on surfaces. For a single filament in solution, two principal adsorption scenarios are possible. Both scenarios depend primarly on the interaction strength between the filament and the support: i) For interactions in the range of the thermal energy, the filament can freely equilibrate on the surface during adsorption; ii) For interactions much stronger than the thermal energy, the filament will be captured by the surface without having equilibrated. Such a ‘trapping’ mechanism leads to more condensed filament images and hence to a smaller value for the apparent persistence length. To understand the capture mechanism in more detail we have performed Brownian dynamics simulations of relatively short filaments by taking the two extreme scenarios into account. We then compared these ‘ideal’ adsorption scenarios with observed images of immobilized vimentin intermediate filaments on different surfaces. We found a good agreement between the contours of the deposited vimentin filaments on mica (‘ideal’ trapping) and on glass (‘ideal’ equilibrated) with our simulations. Based on these data, we have developed a strategy to reliably extract the persistence length of short worm-like chain fragments or network forming filaments with unknown polymer-surface interactions. PMID:19888472

  8. THERMAL AND CHEMICAL EVOLUTION OF COLLAPSING FILAMENTS

    SciTech Connect

    Gray, William J.; Scannapieco, Evan

    2013-05-10

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z Almost-Equal-To 0.1 Z{sub Sun} filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form a dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10{sup -3} Z{sub Sun} filaments, the collapse proceeds much more slowly. This is mostly due to the lower initial temperatures, which lead to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbursting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occurs. We find that we achieve similar accretion rates as NGC 5253 but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  9. Thermal and Chemical Evolution of Collapsing Filaments

    SciTech Connect

    Gray, William J.; Scannapieco, Evan

    2013-01-15

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z ≈ 0.1Z filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10-3Z filaments, the collapse proceeds much more slowly. This is due mostly to the lower initial temperatures, which leads to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbusting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occur. We find that we achieve similar accretion rates as NGC 5253 but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  10. Protein Colloidal Aggregation Project

    NASA Technical Reports Server (NTRS)

    Oliva-Buisson, Yvette J. (Compiler)

    2014-01-01

    To investigate the pathways and kinetics of protein aggregation to allow accurate predictive modeling of the process and evaluation of potential inhibitors to prevalent diseases including cataract formation, chronic traumatic encephalopathy, Alzheimer's Disease, Parkinson's Disease and others.

  11. Cell aggregation and sedimentation.

    PubMed

    Davis, R H

    1995-01-01

    The aggregation of cells into clumps or flocs has been exploited for decades in such applications as biological wastewater treatment, beer brewing, antibiotic fermentation, and enhanced sedimentation to aid in cell recovery or retention. More recent research has included the use of cell aggregation and sedimentation to selectively separate subpopulations of cells. Potential biotechnological applications include overcoming contamination, maintaining plasmid-bearing cells in continuous fermentors, and selectively removing nonviable hybridoma cells from perfusion cultures.

  12. Giant axonal neuropathy-associated gigaxonin mutations impair intermediate filament protein degradation.

    PubMed

    Mahammad, Saleemulla; Murthy, S N Prasanna; Didonna, Alessandro; Grin, Boris; Israeli, Eitan; Perrot, Rodolphe; Bomont, Pascale; Julien, Jean-Pierre; Kuczmarski, Edward; Opal, Puneet; Goldman, Robert D

    2013-05-01

    Giant axonal neuropathy (GAN) is an early-onset neurological disorder caused by mutations in the GAN gene (encoding for gigaxonin), which is predicted to be an E3 ligase adaptor. In GAN, aggregates of intermediate filaments (IFs) represent the main pathological feature detected in neurons and other cell types, including patients' dermal fibroblasts. The molecular mechanism by which these mutations cause IFs to aggregate is unknown. Using fibroblasts from patients and normal individuals, as well as Gan-/- mice, we demonstrated that gigaxonin was responsible for the degradation of vimentin IFs. Gigaxonin was similarly involved in the degradation of peripherin and neurofilament IF proteins in neurons. Furthermore, proteasome inhibition by MG-132 reversed the clearance of IF proteins in cells overexpressing gigaxonin, demonstrating the involvement of the proteasomal degradation pathway. Together, these findings identify gigaxonin as a major factor in the degradation of cytoskeletal IFs and provide an explanation for IF aggregate accumulation, the subcellular hallmark of this devastating human disease.

  13. Natural plasmids of filamentous fungi.

    PubMed Central

    Griffiths, A J

    1995-01-01

    Among eukaryotes, plasmids have been found in fungi and plants but not in animals. Most plasmids are mitochondrial. In filamentous fungi, plasmids are commonly encountered in isolates from natural populations. Individual populations may show a predominance of one type, but some plasmids have a global distribution, often crossing species boundaries. Surveys have shown that strains can contain more than one type of plasmid and that different types appear to be distributed independently. In crosses, plasmids are generally inherited maternally. Horizontal transmission is by cell contact. Circular plasmids are common only in Neurospora spp., but linear plasmids have been found in many fungi. Circular plasmids have one open reading frame (ORF) coding for a DNA polymerase or a reverse transcriptase. Linear plasmids generally have two ORFs, coding for presumptive DNA and RNA polymerases with amino acid motifs showing homology to viral polymerases. Plasmids often attain a high copy number, in excess of that of mitochondrial DNA. Linear plasmids have a protein attached to their 5' end, and this is presumed to act as a replication primer. Most plasmids are neutral passengers, but several linear plasmids integrate into mitochondrial DNA, causing death of the host culture. Inferred amino acid sequences of linear plasmid ORFs have been used to plot phylogenetic trees, which show a fair concordance with conventional trees. The circular Neurospora plasmids have replication systems that seem to be evolutionary intermediates between the RNA and the DNA worlds. PMID:8531891

  14. Filament overwrapped motor case technology

    NASA Astrophysics Data System (ADS)

    Compton, Joel P.

    1993-11-01

    Atlantic Research Corporation (ARC) joined with the French Societe Europeenne de Propulsion (SEP) to develop and deliver to the U.S. Navy a small quantity of composite filament wound rocket motors to demonstrate a manufacturing technique that was being applied at the two companies. It was perceived that the manufacturing technique could produce motors that would be light in weight, inexpensive to produce, and that had a good chance of meeting insensitive munitions (IM) requirements that were being formulated by the Navy in the early 1980s. Under subcontract to ARC, SEP designed, tested, and delivered 2.75-inch rocket motors to the U.S. Navy for IM tests that were conducted in 1989 at China Lake, California. The program was one of the first to be founded by Nunn Amendment money. The Government-to-Government program was sponsored by the Naval Air Systems Command and was monitored by the Naval Surface Warfare Center, Indian Head (NSWC-IH), Maryland. The motor propellant that was employed was a new, extruded composite formulation that was under development at the Naval Surface Warfare Center. The following paper describes the highlights of the program and gives the results of structural and ballistic static tests and insensitive munitions tests that were conducted on demonstration motors.

  15. Discovery of a pre-existing molecular filament associated with supernova remnant G127.1+0.5

    SciTech Connect

    Zhou, Xin; Yang, Ji; Fang, Min; Su, Yang

    2014-08-20

    We performed millimeter observations in CO lines toward the supernova remnant (SNR) G127.1+0.5. We found a molecular filament at 4-13 km s{sup –1} consisting of two distinct parts: a straight part coming out of the remnant region and a curved part in the remnant region. The curved part is coincides well with the bright SNR shell detected in 1420 MHz radio continuum and mid-infrared observations in the northeastern region. In addition, redshifted line wing broadening is found only in the curved part of the molecular filament, which indicates a physical interaction. These provide strong evidences, for the first time, to confirm the association between an SNR and a pre-existing long molecular filament. Multi-band observations in the northeastern remnant shell could be explained by the interaction between the remnant shock and the dense molecular filament. RADEX radiative transfer modeling of the quiet and shocked components yield physical conditions consistent with the passage of a non-dissociative J-type shock. We argue that the curved part of the filament is fully engulfed by the remnant's forward shock. A spatial correlation between aggregated young stellar objects (YSOs) and the adjacent molecular filament close to the SNR is also found, which could be related to the progenitor's activity.

  16. Actin Filament Segmentation Using Dynamic Programming

    PubMed Central

    Li, Hongsheng; Shen, Tian; Huang, Xiaolei

    2011-01-01

    We introduce a novel algorithm for actin filament segmentation in 2D TIRFM image sequences. This problem is difficult because actin filaments dynamically change shapes during their growth, and the TIRFM images are usually noisy. We ask a user to specify the two tips of a filament of interest in the first frame. We then model the segmentation problem in an image sequence as a temporal chain, where its states are tip locations; given candidate tip locations, actin filaments' body points are inferred by a dynamic programming method, which adaptively generates candidate solutions. Combining candidate tip locations and their inferred body points, the temporal chain model is efficiently optimized using another dynamic programming method. Evaluation on noisy TIRFM image sequences demonstrates the accuracy and robustness of this approach. PMID:21761674

  17. Intermediate filaments in small configuration spaces.

    PubMed

    Nöding, Bernd; Köster, Sarah

    2012-02-24

    Intermediate filaments play a key role in cell mechanics. Apart from their great importance from a biomedical point of view, they also act as a very suitable micrometer-sized model system for semiflexible polymers. We perform a statistical analysis of the thermal fluctuations of individual filaments confined in microchannels. The small channel width and the resulting deflections at the walls give rise to a reduction of the configuration space by about 2 orders of magnitude. This circumstance enables us to precisely measure the intrinsic persistence length of vimentin intermediate filaments and to show that they behave as ideal wormlike chains; we observe that small fluctuations in perpendicular planes decouple. Furthermore, the inclusion of results for confined actin filaments demonstrates that the Odijk confinement regime is valid over at least 1 order of magnitude in persistence length. PMID:22463576

  18. Viscosity of Sheared Helical filament Suspensions

    NASA Astrophysics Data System (ADS)

    Sartucci, Matthew; Urbach, Jeff; Blair, Dan; Schwenger, Walter

    The viscosity of suspensions can be dramatically affected by high aspect ratio particles. Understanding these systems provides insight into key biological functions and can be manipulated for many technological applications. In this talk, the viscosity as a function of shear rate of suspensions of helical filaments is compared to that of suspensions of straight rod-like filaments. Our goal is to determine the impact of filament geometry on low volume fraction colloidal suspensions in order to identify strategies for altering viscosity with minimal volume fraction. In this research, the detached flagella of the bacteria Salmonella Typhimurium are used as a model system of helical filaments and compared to mutated straight flagella of the Salmonella. We compare rheological measurements of the suspension viscosity in response to shear flow and use a combination of the rheology and fluorescence microscopy to identify the microstructural changes responsible for the observed rheological response.

  19. Huge Filament Rises From Sun's Northern Hemisphere

    NASA Video Gallery

    On August 1, 2010 following a C3-class solar flare from sunspot 1092, an enormous magnetic filament stretching across the sun's northern hemisphere erupted. This 304 angstrom video shows that filam...

  20. Physical properties of cytoplasmic intermediate filaments.

    PubMed

    Block, Johanna; Schroeder, Viktor; Pawelzyk, Paul; Willenbacher, Norbert; Köster, Sarah

    2015-11-01

    Intermediate filaments (IFs) constitute a sophisticated filament system in the cytoplasm of eukaryotes. They form bundles and networks with adapted viscoelastic properties and are strongly interconnected with the other filament types, microfilaments and microtubules. IFs are cell type specific and apart from biochemical functions, they act as mechanical entities to provide stability and resilience to cells and tissues. We review the physical properties of these abundant structural proteins including both in vitro studies and cell experiments. IFs are hierarchical structures and their physical properties seem to a large part be encoded in the very specific architecture of the biopolymers. Thus, we begin our review by presenting the assembly mechanism, followed by the mechanical properties of individual filaments, network and structure formation due to electrostatic interactions, and eventually the mechanics of in vitro and cellular networks. This article is part of a Special Issue entitled: Mechanobiology.

  1. Intermediate filaments in small configuration spaces.

    PubMed

    Nöding, Bernd; Köster, Sarah

    2012-02-24

    Intermediate filaments play a key role in cell mechanics. Apart from their great importance from a biomedical point of view, they also act as a very suitable micrometer-sized model system for semiflexible polymers. We perform a statistical analysis of the thermal fluctuations of individual filaments confined in microchannels. The small channel width and the resulting deflections at the walls give rise to a reduction of the configuration space by about 2 orders of magnitude. This circumstance enables us to precisely measure the intrinsic persistence length of vimentin intermediate filaments and to show that they behave as ideal wormlike chains; we observe that small fluctuations in perpendicular planes decouple. Furthermore, the inclusion of results for confined actin filaments demonstrates that the Odijk confinement regime is valid over at least 1 order of magnitude in persistence length.

  2. Fibronectin Aggregation and Assembly

    PubMed Central

    Ohashi, Tomoo; Erickson, Harold P.

    2011-01-01

    The mechanism of fibronectin (FN) assembly and the self-association sites are still unclear and contradictory, although the N-terminal 70-kDa region (I1–9) is commonly accepted as one of the assembly sites. We previously found that I1–9 binds to superfibronectin, which is an artificial FN aggregate induced by anastellin. In the present study, we found that I1–9 bound to the aggregate formed by anastellin and a small FN fragment, III1–2. An engineered disulfide bond in III2, which stabilizes folding, inhibited aggregation, but a disulfide bond in III1 did not. A gelatin precipitation assay showed that I1–9 did not interact with anastellin, III1, III2, III1–2, or several III1–2 mutants including III1–2KADA. (In contrast to previous studies, we found that the III1–2KADA mutant was identical in conformation to wild-type III1–2.) Because I1–9 only bound to the aggregate and the unfolding of III2 played a role in aggregation, we generated a III2 domain that was destabilized by deletion of the G strand. This mutant bound I1–9 as shown by the gelatin precipitation assay and fluorescence resonance energy transfer analysis, and it inhibited FN matrix assembly when added to cell culture. Next, we introduced disulfide mutations into full-length FN. Three disulfide locks in III2, III3, and III11 were required to dramatically reduce anastellin-induced aggregation. When we tested the disulfide mutants in cell culture, only the disulfide bond in III2 reduced the FN matrix. These results suggest that the unfolding of III2 is one of the key factors for FN aggregation and assembly. PMID:21949131

  3. Can we determine the filament chirality by the filament footpoint location or the barb-bearing?

    NASA Astrophysics Data System (ADS)

    Hao, Qi; Guo, Yang; Fang, Cheng; Chen, Peng-Fei; Cao, Wen-Da

    2016-01-01

    We attempt to propose a method for automatically detecting the solar filament chirality and barb bearing. We first introduce the concept of an unweighted undirected graph and adopt the Dijkstra shortest path algorithm to recognize the filament spine. Then, we use the polarity inversion line (PIL) shift method for measuring the polarities on both sides of the filament, and employ the connected components labeling method to identify the barbs and calculate the angle between each barb and the spine to determine the bearing of the barbs, i.e., left or right. We test the automatic detection method with Hα filtergrams from the Big Bear Solar Observatory (BBSO) Hα archive and magnetograms observed with the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamics Observatory (SDO). Four filaments are automatically detected and illustrated to show the results. The barbs in different parts of a filament may have opposite bearings. The filaments in the southern hemisphere (northern hemisphere) mainly have left-bearing (right-bearing) barbs and positive (negative) magnetic helicity, respectively. The tested results demonstrate that our method is efficient and effective in detecting the bearing of filament barbs. It is demonstrated that the conventionally believed one-to-one correspondence between filament chirality and barb bearing is not valid. The correct detection of the filament axis chirality should be done by combining both imaging morphology and magnetic field observations.

  4. Filament-wound, fiberglass cryogenic tank supports

    NASA Technical Reports Server (NTRS)

    Carter, J. S.; Timberlake, T. E.

    1971-01-01

    The design, fabrication, and testing of filament-wound, fiberglass cryogenic tank supports for a LH2 tank, a LF2/FLOX tank and a CH4 tank. These supports consist of filament-wound fiberglass tubes with titanium end fittings. These units were satisfactorily tested at cryogenic temperatures, thereby offering a design that can be reliably and economically produced in large or small quantities. The basic design concept is applicable to any situation where strong, lightweight axial load members are desired.

  5. A Robust Actin Filaments Image Analysis Framework

    PubMed Central

    Alioscha-Perez, Mitchel; Benadiba, Carine; Goossens, Katty; Kasas, Sandor; Dietler, Giovanni; Willaert, Ronnie; Sahli, Hichem

    2016-01-01

    The cytoskeleton is a highly dynamical protein network that plays a central role in numerous cellular physiological processes, and is traditionally divided into three components according to its chemical composition, i.e. actin, tubulin and intermediate filament cytoskeletons. Understanding the cytoskeleton dynamics is of prime importance to unveil mechanisms involved in cell adaptation to any stress type. Fluorescence imaging of cytoskeleton structures allows analyzing the impact of mechanical stimulation in the cytoskeleton, but it also imposes additional challenges in the image processing stage, such as the presence of imaging-related artifacts and heavy blurring introduced by (high-throughput) automated scans. However, although there exists a considerable number of image-based analytical tools to address the image processing and analysis, most of them are unfit to cope with the aforementioned challenges. Filamentous structures in images can be considered as a piecewise composition of quasi-straight segments (at least in some finer or coarser scale). Based on this observation, we propose a three-steps actin filaments extraction methodology: (i) first the input image is decomposed into a ‘cartoon’ part corresponding to the filament structures in the image, and a noise/texture part, (ii) on the ‘cartoon’ image, we apply a multi-scale line detector coupled with a (iii) quasi-straight filaments merging algorithm for fiber extraction. The proposed robust actin filaments image analysis framework allows extracting individual filaments in the presence of noise, artifacts and heavy blurring. Moreover, it provides numerous parameters such as filaments orientation, position and length, useful for further analysis. Cell image decomposition is relatively under-exploited in biological images processing, and our study shows the benefits it provides when addressing such tasks. Experimental validation was conducted using publicly available datasets, and in osteoblasts

  6. A Robust Actin Filaments Image Analysis Framework.

    PubMed

    Alioscha-Perez, Mitchel; Benadiba, Carine; Goossens, Katty; Kasas, Sandor; Dietler, Giovanni; Willaert, Ronnie; Sahli, Hichem

    2016-08-01

    The cytoskeleton is a highly dynamical protein network that plays a central role in numerous cellular physiological processes, and is traditionally divided into three components according to its chemical composition, i.e. actin, tubulin and intermediate filament cytoskeletons. Understanding the cytoskeleton dynamics is of prime importance to unveil mechanisms involved in cell adaptation to any stress type. Fluorescence imaging of cytoskeleton structures allows analyzing the impact of mechanical stimulation in the cytoskeleton, but it also imposes additional challenges in the image processing stage, such as the presence of imaging-related artifacts and heavy blurring introduced by (high-throughput) automated scans. However, although there exists a considerable number of image-based analytical tools to address the image processing and analysis, most of them are unfit to cope with the aforementioned challenges. Filamentous structures in images can be considered as a piecewise composition of quasi-straight segments (at least in some finer or coarser scale). Based on this observation, we propose a three-steps actin filaments extraction methodology: (i) first the input image is decomposed into a 'cartoon' part corresponding to the filament structures in the image, and a noise/texture part, (ii) on the 'cartoon' image, we apply a multi-scale line detector coupled with a (iii) quasi-straight filaments merging algorithm for fiber extraction. The proposed robust actin filaments image analysis framework allows extracting individual filaments in the presence of noise, artifacts and heavy blurring. Moreover, it provides numerous parameters such as filaments orientation, position and length, useful for further analysis. Cell image decomposition is relatively under-exploited in biological images processing, and our study shows the benefits it provides when addressing such tasks. Experimental validation was conducted using publicly available datasets, and in osteoblasts grown in

  7. Actomyosin contraction, aggregation and traveling waves in a treadmilling actin array

    NASA Astrophysics Data System (ADS)

    Oelz, Dietmar; Mogilner, Alex

    2016-04-01

    We use perturbation theory to derive a continuum model for the dynamic actomyosin bundle/ring in the regime of very strong crosslinking. Actin treadmilling is essential for contraction. Linear stability analysis and numerical solutions of the model equations reveal that when the actin treadmilling is very slow, actin and myosin aggregate into equidistantly spaced peaks. When treadmilling is significant, actin filament of one polarity are distributed evenly, while filaments of the opposite polarity develop a shock wave moving with the treadmilling velocity. Myosin aggregates into a sharp peak surfing the crest of the actin wave. Any actomyosin aggregation diminishes contractile stress. The easiest way to maintain higher contraction is to upregulate the actomyosin turnover which destabilizes nontrivial patterns and stabilizes the homogeneous actomyosin distributions. We discuss the model's implications for the experiment.

  8. Helicity as a Component of Filament Formation

    NASA Astrophysics Data System (ADS)

    Mackay, D. H.; Gaizauskas, V.

    2003-09-01

    In this paper we seek the origin of the axial component of the magnetic field in filaments by adapting theory to observations. A previous paper (Mackay, Gaizauskas, and van Ballegooijen, 2000) showed that surface flows acting on potential magnetic fields for 27 days the maximum time between the emergence of magnetic flux and the formation of large filaments between the resulting activity complexes cannot explain the chirality or inverse polarity nature of the observed filaments. We show that the inclusion of initial helicity, for which there is observational evidence, in the flux transport model results in sufficiently strong dextral fields of inverse polarity to account for the existence and length of an observed filament within the allotted time. The simulations even produce a large length of dextral chirality when just small amounts of helicity are included in the initial configuration. The modeling suggests that the axial field component in filaments can result from a combination of surface (flux transport) and sub-surface (helicity) effects acting together. Here surface effects convert the large-scale helicity emerging in active regions into a smaller-scale magnetic-field component parallel to the polarity inversion line so as to form a magnetic configuration suitable for a filament.

  9. Filaments in the Lupus molecular clouds

    NASA Astrophysics Data System (ADS)

    Benedettini, M.; Schisano, E.; Pezzuto, S.; Elia, D.; André, P.; Könyves, V.; Schneider, N.; Tremblin, P.; Arzoumanian, D.; di Giorgio, A. M.; Di Francesco, J.; Hill, T.; Molinari, S.; Motte, F.; Nguyen-Luong, Q.; Palmeirim, P.; Rivera-Ingraham, A.; Roy, A.; Rygl, K. L. J.; Spinoglio, L.; Ward-Thompson, D.; White, G. J.

    2015-10-01

    We have studied the filaments extracted from the column density maps of the nearby Lupus 1, 3, and 4 molecular clouds, derived from photometric maps observed with the Herschel satellite. Filaments in the Lupus clouds have quite low column densities, with a median value of ˜1.5 × 1021 cm-2 and most have masses per unit length lower than the maximum critical value for radial gravitational collapse. Indeed, no evidence of filament contraction has been seen in the gas kinematics. We find that some filaments, that on average are thermally subcritical, contain dense cores that may eventually form stars. This is an indication that in the low column density regime, the critical condition for the formation of stars may be reached only locally and this condition is not a global property of the filament. Finally, in Lupus we find multiple observational evidences of the key role that the magnetic field plays in forming filaments, and determining their confinement and dynamical evolution.

  10. Seeking sunlight: rapid phototactic motility of filamentous mat-forming cyanobacteria optimize photosynthesis and enhance carbon burial in Lake Huron's submerged sinkholes.

    PubMed

    Biddanda, Bopaiah A; McMillan, Adam C; Long, Stephen A; Snider, Michael J; Weinke, Anthony D

    2015-01-01

    We studied the motility of filamentous mat-forming cyanobacteria consisting primarily of Oscillatoria-like cells growing under low-light, low-oxygen, and high-sulfur conditions in Lake Huron's submerged sinkholes using in situ observations, in vitro measurements and time-lapse microscopy. Gliding movement of the cyanobacterial trichomes (100-10,000 μm long filaments, composed of cells ∼10 μm wide and ∼3 μm tall) revealed individual as well as group-coordinated motility. When placed in a petri dish and dispersed in ground water from the sinkhole, filaments re-aggregated into defined colonies within minutes, then dispersed again. Speed of individual filaments increased with temperature from ∼50 μm min(-1) or ∼15 body lengths min(-1) at 10°C to ∼215 μm min(-1) or ∼70 body lengths min(-1) at 35°C - rates that are rapid relative to non-flagellated/ciliated microbes. Filaments exhibited precise and coordinated positive phototaxis toward pinpoints of light and congregated under the light of foil cutouts. Such light-responsive clusters showed an increase in photosynthetic yield - suggesting phototactic motility aids in light acquisition as well as photosynthesis. Once light source was removed, filaments slowly spread out evenly and re-aggregated, demonstrating coordinated movement through inter-filament communication regardless of light. Pebbles and pieces of broken shells placed upon intact mat were quickly covered by vertically motile filaments within hours and became fully buried in the anoxic sediments over 3-4 diurnal cycles - likely facilitating the preservation of falling debris. Coordinated horizontal and vertical filament motility optimize mat cohesion and dynamics, photosynthetic efficiency and sedimentary carbon burial in modern-day sinkhole habitats that resemble the shallow seas in Earth's early history. Analogous cyanobacterial motility may have played a key role in the oxygenation of the planet by optimizing photosynthesis while favoring

  11. Seeking sunlight: rapid phototactic motility of filamentous mat-forming cyanobacteria optimize photosynthesis and enhance carbon burial in Lake Huron's submerged sinkholes.

    PubMed

    Biddanda, Bopaiah A; McMillan, Adam C; Long, Stephen A; Snider, Michael J; Weinke, Anthony D

    2015-01-01

    We studied the motility of filamentous mat-forming cyanobacteria consisting primarily of Oscillatoria-like cells growing under low-light, low-oxygen, and high-sulfur conditions in Lake Huron's submerged sinkholes using in situ observations, in vitro measurements and time-lapse microscopy. Gliding movement of the cyanobacterial trichomes (100-10,000 μm long filaments, composed of cells ∼10 μm wide and ∼3 μm tall) revealed individual as well as group-coordinated motility. When placed in a petri dish and dispersed in ground water from the sinkhole, filaments re-aggregated into defined colonies within minutes, then dispersed again. Speed of individual filaments increased with temperature from ∼50 μm min(-1) or ∼15 body lengths min(-1) at 10°C to ∼215 μm min(-1) or ∼70 body lengths min(-1) at 35°C - rates that are rapid relative to non-flagellated/ciliated microbes. Filaments exhibited precise and coordinated positive phototaxis toward pinpoints of light and congregated under the light of foil cutouts. Such light-responsive clusters showed an increase in photosynthetic yield - suggesting phototactic motility aids in light acquisition as well as photosynthesis. Once light source was removed, filaments slowly spread out evenly and re-aggregated, demonstrating coordinated movement through inter-filament communication regardless of light. Pebbles and pieces of broken shells placed upon intact mat were quickly covered by vertically motile filaments within hours and became fully buried in the anoxic sediments over 3-4 diurnal cycles - likely facilitating the preservation of falling debris. Coordinated horizontal and vertical filament motility optimize mat cohesion and dynamics, photosynthetic efficiency and sedimentary carbon burial in modern-day sinkhole habitats that resemble the shallow seas in Earth's early history. Analogous cyanobacterial motility may have played a key role in the oxygenation of the planet by optimizing photosynthesis while favoring

  12. Filamentation of collimated Ti:sapphire-laser pulses in water

    NASA Astrophysics Data System (ADS)

    Apeksimov, D. V.; Bukin, O. A.; Golik, S. S.; Zemlyanov, A. A.; Kabanov, A. M.; Kuchinskaya, O. I.; Mayor, A. Y.; Matvienko, G. G.; Petrov, A. V.; Sokolova, E. B.

    2015-12-01

    The results of experimental studies of the spatial characteristics of multiple filamentation terawatt femtosecond Ti:Salaser in water are presented. With an increase in initial power laser pulses increases the number of filaments, the length of the field is increased filamentation and reducing the length of the filaments have been shown. The distribution of the filaments in the longitudinal direction of the field of multiple filamentation has a maximum cross-sectional filament is shifted from the center to the periphery of the beam at the end region of filamentation. The minimum diameter of the beam on the track corresponds to the position of the maximum number of filaments. After the point of maximum impulse essentially loses energy in the initial direction of propagation. Upon reaching the pulse power 2 104 Pcr of multiple filamentation area is formed of a hollow cone, the apex directed to the radiation source.

  13. Multiple filamentation Ti:Sapphire-laser pulses in water

    NASA Astrophysics Data System (ADS)

    Apeksimov, D. V.; Bukin, O. A.; Golik, S. S.; Zemlyanov, A. A.; Kabanov, A. M.; Kuchinskaya, O. I.; Mayor, A. Yu.; Matvienko, G. G.; Petrov, A. V.; Sokolova, E. B.

    2015-11-01

    The results of experimental studies of the spatial characteristics of multiple filamentation terawatt femtosecond Ti:Salaser in water are presented. With an increase in initial power laser pulses increases the number of filaments, the length of the field is increased filamentation and reducing the length of the filaments have been shown. The distribution of the filaments in the longitudinal direction of the field of multiple filamentation has a maximum cross-sectional filament is shifted from the center to the periphery of the beam at the end region of filamentation. The minimum diameter of the beam on the track corresponds to the position of the maximum number of filaments. After the point of maximum impulse essentially loses energy in the initial direction of propagation. Upon reaching the pulse power 2 104 Pcr of multiple filamentation area is formed of a hollow cone, the apex directed to the radiation source.

  14. Morphology of Filamentous Fungi: Linking Cellular Biology to Process Engineering Using Aspergillus niger

    NASA Astrophysics Data System (ADS)

    Krull, Rainer; Cordes, Christiana; Horn, Harald; Kampen, Ingo; Kwade, Arno; Neu, Thomas R.; Nörtemann, Bernd

    In various biotechnological processes, filamentous fungi, e.g. Aspergillus niger, are widely applied for the production of high value-added products due to their secretion efficiency. There is, however, a tangled relationship between the morphology of these microorganisms, the transport phenomena and the related productivity. The morphological characteristics vary between freely dispersed mycelia and distinct pellets of aggregated biomass. Hence, advantages and disadvantages for mycel or pellet cultivation have to be balanced out carefully. Due to this inadequate understanding of morphogenesis of filamentous microorganisms, fungal morphology, along with reproducibility of inocula of the same quality, is often a bottleneck of productivity in industrial production. To obtain an optimisation of the production process it is of great importance to gain a better understanding of the molecular and cell biology of these microorganisms as well as the approaches in biochemical engineering and particle technique, in particular to characterise the interactions between the growth conditions, cell morphology, spore-hyphae-interactions and product formation. Advances in particle and image analysis techniques as well as micromechanical devices and their applications to fungal cultivations have made available quantitative morphological data on filamentous cells. This chapter provides the ambitious aspects of this line of action, focussing on the control and characterisation of the morphology, the transport gradients and the approaches to understand the metabolism of filamentous fungi. Based on these data, bottlenecks in the morphogenesis of A. niger within the complex production pathways from gene to product should be identified and this may improve the production yield.

  15. A laminopathic mutation disrupting lamin filament assembly causes disease-like phenotypes in Caenorhabditis elegans

    PubMed Central

    Bank, Erin M.; Ben-Harush, Kfir; Wiesel-Motiuk, Naama; Barkan, Rachel; Feinstein, Naomi; Lotan, Oren; Medalia, Ohad; Gruenbaum, Yosef

    2011-01-01

    Mutations in the human LMNA gene underlie many laminopathic diseases, including Emery-Dreifuss muscular dystrophy (EDMD); however, a mechanistic link between the effect of mutations on lamin filament assembly and disease phenotypes has not been established. We studied the ΔK46 Caenorhabditis elegans lamin mutant, corresponding to EDMD-linked ΔK32 in human lamins A and C. Cryo-electron tomography of lamin ΔK46 filaments in vitro revealed alterations in the lateral assembly of dimeric head-to-tail polymers, which causes abnormal organization of tetrameric protofilaments. Green fluorescent protein (GFP):ΔK46 lamin expressed in C. elegans was found in nuclear aggregates in postembryonic stages along with LEM-2. GFP:ΔK46 also caused mislocalization of emerin away from the nuclear periphery, consistent with a decreased ability of purified emerin to associate with lamin ΔK46 filaments in vitro. GFP:ΔK46 animals had motility defects and muscle structure abnormalities. These results show that changes in lamin filament structure can translate into disease-like phenotypes via altering the localization of nuclear lamina proteins, and suggest a model for how the ΔK32 lamin mutation may cause EDMD in humans. PMID:21653823

  16. Structural basis for the prion-like MAVS filaments in antiviral innate immunity

    PubMed Central

    Xu, Hui; He, Xiaojing; Zheng, Hui; Huang, Lily J; Hou, Fajian; Yu, Zhiheng; de la Cruz, Michael Jason; Borkowski, Brian; Zhang, Xuewu; Chen, Zhijian J; Jiang, Qiu-Xing

    2014-01-01

    Mitochondrial antiviral signaling (MAVS) protein is required for innate immune responses against RNA viruses. In virus-infected cells MAVS forms prion-like aggregates to activate antiviral signaling cascades, but the underlying structural mechanism is unknown. Here we report cryo-electron microscopic structures of the helical filaments formed by both the N-terminal caspase activation and recruitment domain (CARD) of MAVS and a truncated MAVS lacking part of the proline-rich region and the C-terminal transmembrane domain. Both structures are left-handed three-stranded helical filaments, revealing specific interfaces between individual CARD subunits that are dictated by electrostatic interactions between neighboring strands and hydrophobic interactions within each strand. Point mutations at multiple locations of these two interfaces impaired filament formation and antiviral signaling. Super-resolution imaging of virus-infected cells revealed rod-shaped MAVS clusters on mitochondria. These results elucidate the structural mechanism of MAVS polymerization, and explain how an α-helical domain uses distinct chemical interactions to form self-perpetuating filaments. DOI: http://dx.doi.org/10.7554/eLife.01489.001 PMID:24569476

  17. Technology meets aggregate

    SciTech Connect

    Wilson, C.; Swan, C.

    2007-07-01

    New technology carried out at Tufts University and the University of Massachusetts on synthetic lightweight aggregate has created material from various qualities of fly ash from coal-fired power plants for use in different engineered applications. In pilot scale manufacturing tests an 'SLA' containing 80% fly ash and 20% mixed plastic waste from packaging was produced by 'dry blending' mixed plastic with high carbon fly ash. A trial run was completed to produce concrete masonry unit (CMU) blocks at a full-scale facility. It has been shown that SLA can be used as a partial substitution of a traditional stone aggregate in hot asphalt mix. 1 fig., 2 photos.

  18. Aggregates, broccoli and cauliflower

    NASA Astrophysics Data System (ADS)

    Grey, Francois; Kjems, Jørgen K.

    1989-09-01

    Naturally grown structures with fractal characters like broccoli and cauliflower are discussed and compared with DLA-type aggregates. It is suggested that the branching density can be used to characterize the growth process and an experimental method to determine this parameter is proposed.

  19. Interaction and merging of two sinistral filaments

    SciTech Connect

    Jiang, Yunchun; Yang, Jiayan; Liu, Yu; Li, Haidong; Wang, Haimin; Ji, Haisheng; Li, Jianping

    2014-09-20

    In this paper, we report the interaction and subsequent merging of two sinistral filaments (F1 and F2) occurring at the boundary of AR 9720 on 2001 December 6. The two filaments were close and nearly perpendicular to each other. The interaction occurred after F1 was erupted and the eruption was impeded by a more extended filament channel (FC) standing in the way, in which F2 was embedded. The erupted material ran into FC along its axis, causing F1 and F2 to merge into a single structure that subsequently underwent a large-amplitude to-and-fro motion. A significant plasma heating process was observed in the merging process, making the mixed material largely disappear from the Hα passband, but appear in Extreme Ultraviolet Telescope 195 Å images for a while. These observations can serve as strong evidence of merging reconnection between the two colliding magnetic structures. A new sinistral filament was formed along FC after the cooling of the merged and heated material. No coronal mass ejection was observed to be associated with the event; though, the eruption was accompanied by a two-ribbon flare with a separation motion, indicating that the eruption had failed. This event shows that, in addition to overlying magnetic fields, such an interaction is an effective restraint to make a filament eruption fail in this way.

  20. Interaction and Merging of two Sinistral Filaments

    NASA Astrophysics Data System (ADS)

    Jiang, Yunchun; Yang, Jiayan; Wang, Haimin; Ji, Haisheng; Liu, Yu; Li, Haidong; Li, Jianping

    2014-09-01

    In this paper, we report the interaction and subsequent merging of two sinistral filaments (F1 and F2) occurring at the boundary of AR 9720 on 2001 December 6. The two filaments were close and nearly perpendicular to each other. The interaction occurred after F1 was erupted and the eruption was impeded by a more extended filament channel (FC) standing in the way, in which F2 was embedded. The erupted material ran into FC along its axis, causing F1 and F2 to merge into a single structure that subsequently underwent a large-amplitude to-and-fro motion. A significant plasma heating process was observed in the merging process, making the mixed material largely disappear from the Hα passband, but appear in Extreme Ultraviolet Telescope 195 Å images for a while. These observations can serve as strong evidence of merging reconnection between the two colliding magnetic structures. A new sinistral filament was formed along FC after the cooling of the merged and heated material. No coronal mass ejection was observed to be associated with the event; though, the eruption was accompanied by a two-ribbon flare with a separation motion, indicating that the eruption had failed. This event shows that, in addition to overlying magnetic fields, such an interaction is an effective restraint to make a filament eruption fail in this way.

  1. SYMPATHETIC FILAMENT ERUPTIONS CONNECTED BY CORONAL DIMMINGS

    SciTech Connect

    Jiang Yunchun; Yang Jiayan; Hong Junchao; Bi Yi; Zheng Ruisheng

    2011-09-10

    We present for the first time detailed observations of three successive, interdependent filament eruptions that occurred one by one within 5 hr from different locations beyond the range of a single active region. The first eruption was observed from an active region and was associated with a coronal mass ejection (CME), during which diffuse and complex coronal dimmings formed, largely extending to the two other filaments located in quiet-Sun regions. Then, both quiescent filaments consecutively underwent the second and third eruptions, while the nearby dimmings were persistent. Comparing the result of a derived coronal magnetic configuration, the magnetic connectivity between the dimmings suggested that they were caused by the joint effect of simple expansion of overlying loop systems forced by the first eruption, as well as by its erupting field interacting or reconnecting with the surrounding magnetic structures. Note that the dimming process in the first eruption indicated a weakening and partial removal of an overlying magnetic field constraint on the two other filaments, and thus one can physically connect these eruptions as sympathetic. It appears that the peculiar magnetic field configuration in our event was largely favorable to the occurrence of sympathetic filament eruptions. Because coronal dimmings are frequent and common phenomena in solar eruptions, especially in CME events, it is very likely that they represent a universal agent that can link consecutive eruptions nearby with sympathetic eruptions.

  2. Nonlinear elasticity of semiflexible filament networks.

    PubMed

    Meng, Fanlong; Terentjev, Eugene M

    2016-08-10

    We develop a continuum theory for equilibrium elasticity of a network of crosslinked semiflexible filaments, spanning the full range between flexible entropy-driven chains to stiff athermal rods. We choose the 3-chain constitutive model of network elasticity over several plausible candidates, and derive analytical expressions for the elastic energy at arbitrary strain, with the corresponding stress-strain relationship. The theory fits well to a wide range of experimental data on simple shear in different filament networks, quantitatively matching the differential shear modulus variation with stress, with only two adjustable parameters (which represent the filament stiffness and the pre-tension in the network, respectively). The general theory accurately describes the crossover between the positive and negative Poynting effect (normal stress on imposed shear) on increasing the stiffness of filaments forming the network. We discuss the network stability (the point of marginal rigidity) and the phenomenon of tensegrity, showing that filament pre-tension on crosslinking into the network determines the magnitude of linear modulus G0. PMID:27444846

  3. Nonlinear elasticity of semiflexible filament networks.

    PubMed

    Meng, Fanlong; Terentjev, Eugene M

    2016-08-10

    We develop a continuum theory for equilibrium elasticity of a network of crosslinked semiflexible filaments, spanning the full range between flexible entropy-driven chains to stiff athermal rods. We choose the 3-chain constitutive model of network elasticity over several plausible candidates, and derive analytical expressions for the elastic energy at arbitrary strain, with the corresponding stress-strain relationship. The theory fits well to a wide range of experimental data on simple shear in different filament networks, quantitatively matching the differential shear modulus variation with stress, with only two adjustable parameters (which represent the filament stiffness and the pre-tension in the network, respectively). The general theory accurately describes the crossover between the positive and negative Poynting effect (normal stress on imposed shear) on increasing the stiffness of filaments forming the network. We discuss the network stability (the point of marginal rigidity) and the phenomenon of tensegrity, showing that filament pre-tension on crosslinking into the network determines the magnitude of linear modulus G0.

  4. Terahertz waves radiated from two noncollinear femtosecond plasma filaments

    SciTech Connect

    Du, Hai-Wei; Hoshina, Hiromichi; Otani, Chiko; Midorikawa, Katsumi

    2015-11-23

    Terahertz (THz) waves radiated from two noncollinear femtosecond plasma filaments with a crossing angle of 25° are investigated. The irradiated THz waves from the crossing filaments show a small THz pulse after the main THz pulse, which was not observed in those from single-filament scheme. Since the position of the small THz pulse changes with the time-delay of two filaments, this phenomenon can be explained by a model in which the small THz pulse is from the second filament. The denser plasma in the overlap region of the filaments changes the movement of space charges in the plasma, thereby changing the angular distribution of THz radiation. As a result, this schematic induces some THz wave from the second filament to propagate along the path of the THz wave from the first filament. Thus, this schematic alters the direction of the THz radiation from the filamentation, which can be used in THz wave remote sensing.

  5. Void galaxy properties depending on void filament straightness

    NASA Astrophysics Data System (ADS)

    Shim, Junsup; Lee, Jounghun; Hoyle, Fiona

    2015-08-01

    We investigate the properties of galaxies belonging to the filaments in cosmic void regions, using the void catalogue constructed by Pan et al. (2012) from the SDSS DR7. To identify galaxy filaments within a void, voids with 30 or more galaxies are selected as a sample. We identify 3172 filaments in 1055 voids by applying the filament finding algorithm utilizing minimal spanning tree (MST) which is an unique linear pattern into which connects all the galaxies in a void. We study the correlations between galaxy properties and the specific size of filament which quantifies the degree of the filament straightness. For example, the average magnitude and the magnitude of the faintest galaxy in filament decrease as the straightness of the filament increases. We also find that the correlations become stronger in rich filaments with many member galaxies than in poor ones. We discuss a physical explanation to our findings and their cosmological implications.

  6. Molecular Level Insights into Thermally Induced [alpha]-Chymotrypsinogen A Amyloid Aggregation Mechanism and Semiflexible Protofibril Morphology

    SciTech Connect

    Zhang, Aming; Jordan, Jacob L.; Ivanova, Magdalena I.; Weiss, IV., William F.; Roberts, Christopher J.; Fernandez, Erik J.

    2010-12-07

    Understanding nonnative protein aggregation is critical not only to a number of amyloidosis disorders but also for the development of effective and safe biopharmaceuticals. In a series of previous studies [Weiss et al. (2007) Biophys. J. 93, 4392-4403; Andrews et al. (2007) Biochemistry 46, 7558-7571; Andrews et al. (2008) Biochemistry 47, 2397-2403], {alpha}-chymotrypsinogen A (aCgn) and bovine granulocyte colony stimulating factor (bG-CSF) have been shown to exhibit the kinetic and morphological features of other nonnative aggregating proteins at low pH and ionic strength. In this study, we investigated the structural mechanism of aCgn aggregation. The resultant aCgn aggregates were found to be soluble and exhibited semiflexible filamentous aggregate morphology under transmission electron microscopy. In addition, the filamentous aggregates were demonstrated to possess amyloid characteristics by both Congo red binding and X-ray diffraction. Peptide level hydrogen exchange (HX) analysis suggested that a buried native {beta}-sheet comprised of three peptide segments (39-46, 51-64, and 106-114) reorganizes into the cross-{beta} amyloid core of aCgn aggregates and that at least 50% of the sequence adopts a disordered structure in the aggregates. Furthermore, the equimolar, bimodal HX labeling distribution observed for three reported peptides (65-102, 160-180, and 229-245) suggested a heterogeneous assembly of two molecular conformations in aCgn aggregates. This demonstrates that extended {beta}-sheet interactions typical of the amyloid are sufficiently strong that a relatively small fraction of polypeptide sequence can drive formation of filamentous aggregates even under conditions favoring colloidal stability.

  7. Filament velocity scaling laws for warm ions

    SciTech Connect

    Manz, P.; Carralero, D.; Birkenmeier, G.; Müller, H. W.; Scott, B. D.; Müller, S. H.; Fuchert, G.; Stroth, U.

    2013-10-15

    The dynamics of filaments or blobs in the scrape-off layer of magnetic fusion devices are studied by magnitude estimates of a comprehensive drift-interchange-Alfvén fluid model. The standard blob models are reproduced in the cold ion case. Even though usually neglected, in the scrape-off layer, the ion temperature can exceed the electron temperature by an order of magnitude. The ion pressure affects the dynamics of filaments amongst others by adding up to the interchange drive and the polarisation current. It is shown how both effects modify the scaling laws for filament velocity in dependence of its size. Simplifications for experimentally relevant limit regimes are given. These are the sheath dissipation, collisional, and electromagnetic regime.

  8. Random bursts determine dynamics of active filaments

    PubMed Central

    Weber, Christoph A.; Suzuki, Ryo; Schaller, Volker; Aranson, Igor S.; Bausch, Andreas R.; Frey, Erwin

    2015-01-01

    Constituents of living or synthetic active matter have access to a local energy supply that serves to keep the system out of thermal equilibrium. The statistical properties of such fluctuating active systems differ from those of their equilibrium counterparts. Using the actin filament gliding assay as a model, we studied how nonthermal distributions emerge in active matter. We found that the basic mechanism involves the interplay between local and random injection of energy, acting as an analog of a thermal heat bath, and nonequilibrium energy dissipation processes associated with sudden jump-like changes in the system’s dynamic variables. We show here how such a mechanism leads to a nonthermal distribution of filament curvatures with a non-Gaussian shape. The experimental curvature statistics and filament relaxation dynamics are reproduced quantitatively by stochastic computer simulations and a simple kinetic model. PMID:26261319

  9. SOLAR MAGNETIZED 'TORNADOES': RELATION TO FILAMENTS

    SciTech Connect

    Su Yang; Veronig, Astrid; Temmer, Manuela; Wang Tongjiang; Gan Weiqun

    2012-09-10

    Solar magnetized 'tornadoes', a phenomenon discovered in the solar atmosphere, appear as tornado-like structures in the corona but are rooted in the photosphere. Like other solar phenomena, solar tornadoes are a feature of magnetized plasma and therefore differ distinctly from terrestrial tornadoes. Here we report the first analysis of solar 'tornadoes' (two papers which focused on different aspects of solar tornadoes were published in the Astrophysical Journal Letters and Nature, respectively, during the revision of this Letter). A detailed case study of two events indicates that they are rotating vertical magnetic structures probably driven by underlying vortex flows in the photosphere. They usually exist as a group and are related to filaments/prominences, another important solar phenomenon whose formation and eruption are still mysteries. Solar tornadoes may play a distinct role in the supply of mass and twists to filaments. These findings could lead to a new explanation of filament formation and eruption.

  10. Random bursts determine dynamics of active filaments.

    PubMed

    Weber, Christoph A; Suzuki, Ryo; Schaller, Volker; Aranson, Igor S; Bausch, Andreas R; Frey, Erwin

    2015-08-25

    Constituents of living or synthetic active matter have access to a local energy supply that serves to keep the system out of thermal equilibrium. The statistical properties of such fluctuating active systems differ from those of their equilibrium counterparts. Using the actin filament gliding assay as a model, we studied how nonthermal distributions emerge in active matter. We found that the basic mechanism involves the interplay between local and random injection of energy, acting as an analog of a thermal heat bath, and nonequilibrium energy dissipation processes associated with sudden jump-like changes in the system's dynamic variables. We show here how such a mechanism leads to a nonthermal distribution of filament curvatures with a non-Gaussian shape. The experimental curvature statistics and filament relaxation dynamics are reproduced quantitatively by stochastic computer simulations and a simple kinetic model.

  11. Rheology of Vimentin Intermediate Filament Networks

    NASA Astrophysics Data System (ADS)

    Wu, Huayin

    2012-02-01

    A cell's ability to function is highly dependent on its structure and material properties - its capacity to withstand and respond to forces in its environment. The cytoskeleton, which largely determines the cellular mechanical properties, is comprised of biopolymer networks, including filamentous actin, microtubules, and intermediate filaments (IF). Intermediate filaments are much less studied than actin and microtubules. They are much more varied and specialized as well, and have been suggested as being an important platform in mechanotransduction processes in cells. It is thought that they can withstand very high strains and exhibit strain stiffening behavior. We are characterizing vimentin, a type III IF that is found in all vertebrate cells, using rheological techniques. Vimentin elasticity increases upon addition of multivalent cations, which act like molecular crosslinkers. By varying the concentration of cations, we can extract valuable information about how the networks assemble and function.

  12. Spatiotemporal rogue events in optical multiple filamentation.

    PubMed

    Birkholz, Simon; Nibbering, Erik T J; Brée, Carsten; Skupin, Stefan; Demircan, Ayhan; Genty, Goëry; Steinmeyer, Günter

    2013-12-13

    The transient appearance of bright spots in the beam profile of optical filaments formed in xenon is experimentally investigated. Fluence profiles are recorded with high-speed optical cameras at the kilohertz repetition rate of the laser source. A statistical analysis reveals a thresholdlike appearance of heavy-tailed fluence distributions together with the transition from single to multiple filamentation. The multifilament scenario exhibits near-exponential probability density functions, with extreme events exceeding the significant wave height by more than a factor of 10. The extreme events are isolated in space and in time. The macroscopic origin of these experimentally observed heavy-tail statistics is shown to be local refractive index variations inside the nonlinear medium, induced by multiphoton absorption and subsequent plasma thermalization. Microscopically, mergers between filament strings appear to play a decisive role in the observed rogue wave statistics. PMID:24483663

  13. Two-color resonant filamentation in gases

    NASA Astrophysics Data System (ADS)

    Doussot, J.; Béjot, P.; Faucher, O.

    2016-07-01

    In this paper, it is shown that two-photon resonance involving a fundamental field and one of its odd harmonic strongly influences the filamentation process, i.e., the nonlinear propagation of an ultrashort and ultraintense laser field. This particular situation happens, for instance, when a 400 nm fundamental field propagates together with its third harmonic in krypton. Using three-dimensional ab initio calculations, the optical response of krypton is evaluated and the underlying nonlinear refractive indices are extracted. It is found that the resonance also exacerbates higher-order nonlinear processes. Injecting the retrieved higher-order Kerr indices in a nonlinear propagation solver, it is found that the resonance leads to an enhanced defocusing cross-phase modulation that strongly participates to the filament stabilization. This work sheds a light on the mechanism of filamentation, in particular, in the ultraviolet range, where two-color two-photon resonances are expected to occur in many atomic gases.

  14. Solar Magnetized "Tornadoes:" Relation to Filaments

    NASA Astrophysics Data System (ADS)

    Su, Yang; Wang, Tongjiang; Veronig, Astrid; Temmer, Manuela; Gan, Weiqun

    2012-09-01

    Solar magnetized "tornadoes," a phenomenon discovered in the solar atmosphere, appear as tornado-like structures in the corona but are rooted in the photosphere. Like other solar phenomena, solar tornadoes are a feature of magnetized plasma and therefore differ distinctly from terrestrial tornadoes. Here we report the first analysis of solar "tornadoes" (two papers which focused on different aspects of solar tornadoes were published in the Astrophysical Journal Letters and Nature, respectively, during the revision of this Letter). A detailed case study of two events indicates that they are rotating vertical magnetic structures probably driven by underlying vortex flows in the photosphere. They usually exist as a group and are related to filaments/prominences, another important solar phenomenon whose formation and eruption are still mysteries. Solar tornadoes may play a distinct role in the supply of mass and twists to filaments. These findings could lead to a new explanation of filament formation and eruption.

  15. Theoretical and Experimental study on multiple filaments in air

    SciTech Connect

    Zhang Jie; Lu Xin; Hao Zuoqiang; Xi Tingting; Zhang Zhe; Jin Zhan

    2007-07-11

    The physics of filaments formed by femtosecond laser pulses propagating in air is revealed both in theory and in experiment. An analytical method is used to investigate the interaction of two filaments. The interaction Hamiltonian of two filaments with different phase shifts is obtained and used to judge the properly of filaments interaction. The analytical results are in good agreement with simulation results. The influence of energy background on propagation of filaments is investigated in experiment. It is found that the characteristics of filaments can be changed by spatial and temporal control of laser pulses.

  16. Polarized radio filaments outside the Galactic plane

    NASA Astrophysics Data System (ADS)

    Vidal, Matias; Dickinson, C.; Davies, R. D.; Leahy, J. P.

    2015-09-01

    We used data from the WMAP satellite at 23, 33 and 41 GHz to study the diffuse polarized emission over the entire sky. The emission originates mostly from filamentary structures with well-ordered magnetic fields. Some of these structures have been known for decades in radio continuum maps. Their origin is not clear and there are many filaments that are visible for the first time. We have identified and studied 11 filaments. The polarization fraction of some of them can be as high as 40 per cent, which is a signature of a well-ordered magnetic field. The polarization spectral indices, averaged over 18 regions in the sky is β = -3.06 ± 0.02, consistent with synchrotron radiation. There are significant variations in β over the sky (Δβ ≈ 0.2). We explore the link between the large-scale filaments and the local interstellar medium, using the model of an expanding shell in the solar vicinity. We compared observed polarization angles with the predictions from the model and found good agreement. This strongly suggests that many large-scale filaments and loops are nearby structures. This is important in the context of the Galactic magnetic field as these structures are normally included in global models, neglecting the fact that they might be local. We also studied the level of contamination added by the diffuse filaments to the CMB (cosmic microwave background) polarization power spectra. We conclude that, even though these filaments present low radio brightness, a careful removal will be necessary for future all-sky CMB polarization analysis.

  17. U. radio emission from quiescent filaments

    NASA Technical Reports Server (NTRS)

    Lang, Kenneth R.

    1989-01-01

    Full-disk Very Large Array (VLA) synthesis maps of the quiet Sun indicate that filaments can be seen in emission at 91.6 cm wavelength; they are detected in absorption at shorter microwave wavelengths. The 91.6 cm emission has a brightness temperature of T sub B = 3 x 10(exp 5) K. It is hotter, wider and longer than the underlying filament detected at H alpha wavelengths, but the similarity between the shape, position, elongation and orientation of the radio and optical features suggests their close association. The 91.6 cm emission is attributed to the thermal-bremsstrahlung of a hot transition sheath that envelopes the H alpha filament and acts as an interface between the cool, dense H alpha filament and the hotter, rarefied corona. The transition sheath is seen in emission because of the lower optical depth of the corona at 90 cm wavelength, and the width of this sheet is 10(exp 9) cm. A power law gradient in pressure provides a better match to the observations than a constant pressure model; definitive tests of theoretical models await simultaneous multi-wavelength studies of filaments at different observing angles. When the thermal bremsstrahlung is optically thin, the magnetic field strength in the transition sheath can be inferred from the observed circular polarization. Variable physical parameters of the sheath, such as width, electron density, and electron temperature, can explain controversial reports of the detection of, or the failure to detect, the meter-wavelength counterpart of H alpha filaments.

  18. Dynamics of protein aggregation and oligomer formation governed by secondary nucleation

    SciTech Connect

    Michaels, Thomas C. T. Lazell, Hamish W.; Arosio, Paolo; Knowles, Tuomas P. J.

    2015-08-07

    The formation of aggregates in many protein systems can be significantly accelerated by secondary nucleation, a process where existing assemblies catalyse the nucleation of new species. In particular, secondary nucleation has emerged as a central process controlling the proliferation of many filamentous protein structures, including molecular species related to diseases such as sickle cell anemia and a range of neurodegenerative conditions. Increasing evidence suggests that the physical size of protein filaments plays a key role in determining their potential for deleterious interactions with living cells, with smaller aggregates of misfolded proteins, oligomers, being particularly toxic. It is thus crucial to progress towards an understanding of the factors that control the sizes of protein aggregates. However, the influence of secondary nucleation on the time evolution of aggregate size distributions has been challenging to quantify. This difficulty originates in large part from the fact that secondary nucleation couples the dynamics of species distant in size space. Here, we approach this problem by presenting an analytical treatment of the master equation describing the growth kinetics of linear protein structures proliferating through secondary nucleation and provide closed-form expressions for the temporal evolution of the resulting aggregate size distribution. We show how the availability of analytical solutions for the full filament distribution allows us to identify the key physical parameters that control the sizes of growing protein filaments. Furthermore, we use these results to probe the dynamics of the populations of small oligomeric species as they are formed through secondary nucleation and discuss the implications of our work for understanding the factors that promote or curtail the production of these species with a potentially high deleterious biological activity.

  19. Dynamics of protein aggregation and oligomer formation governed by secondary nucleation

    NASA Astrophysics Data System (ADS)

    Michaels, Thomas C. T.; Lazell, Hamish W.; Arosio, Paolo; Knowles, Tuomas P. J.

    2015-08-01

    The formation of aggregates in many protein systems can be significantly accelerated by secondary nucleation, a process where existing assemblies catalyse the nucleation of new species. In particular, secondary nucleation has emerged as a central process controlling the proliferation of many filamentous protein structures, including molecular species related to diseases such as sickle cell anemia and a range of neurodegenerative conditions. Increasing evidence suggests that the physical size of protein filaments plays a key role in determining their potential for deleterious interactions with living cells, with smaller aggregates of misfolded proteins, oligomers, being particularly toxic. It is thus crucial to progress towards an understanding of the factors that control the sizes of protein aggregates. However, the influence of secondary nucleation on the time evolution of aggregate size distributions has been challenging to quantify. This difficulty originates in large part from the fact that secondary nucleation couples the dynamics of species distant in size space. Here, we approach this problem by presenting an analytical treatment of the master equation describing the growth kinetics of linear protein structures proliferating through secondary nucleation and provide closed-form expressions for the temporal evolution of the resulting aggregate size distribution. We show how the availability of analytical solutions for the full filament distribution allows us to identify the key physical parameters that control the sizes of growing protein filaments. Furthermore, we use these results to probe the dynamics of the populations of small oligomeric species as they are formed through secondary nucleation and discuss the implications of our work for understanding the factors that promote or curtail the production of these species with a potentially high deleterious biological activity.

  20. Integration of hydrodynamic interactions between filaments

    NASA Astrophysics Data System (ADS)

    Man, Yi; Lauga, Eric

    2015-11-01

    In many biological situations, slender filaments interact through a viscous fluid, and these hydrodynamic interactions play a crucial cellular role. Examples include the ability of peritrichous bacteria to bundle their flagella or the generation of metachronal waves in cilia arrays. In most cases of interest, three distinct length scales characterize the filaments, their typical thickness a, relative distance h, and length L, which are asymptotically separated as a << h << L . In this talk, we demonstrate how to analytically develop a long-wavelength integration of hydrodynamic singularities in this biologically-relevant limit.

  1. Infrared Radiation Filament And Metnod Of Manufacture

    DOEpatents

    Johnson, Edward A.

    1998-11-17

    An improved IR radiation source is provided by the invention. A radiation filament has a textured surface produced by seeded ion bombardment of a metal foil which is cut to a serpentine shape and mounted in a windowed housing. Specific ion bombardment texturing techniques tune the surface to maximize emissions in the desired wavelength range and to limit emissions outside that narrow range, particularly at longer wavelengths. A combination of filament surface texture, thickness, material, shape and power circuit feedback control produce wavelength controlled and efficient radiation at much lower power requirements than devices of the prior art.

  2. Filament assemblies in foreign nucleic acid sensors.

    PubMed

    Sohn, Jungsan; Hur, Sun

    2016-04-01

    Helical filamentous assembly is ubiquitous in biology, but was only recently realized to be broadly employed in the innate immune system of vertebrates. Accumulating evidence suggests that the filamentous assemblies and helical oligomerization play important roles in detection of foreign nucleic acids and activation of the signaling pathways to produce antiviral and inflammatory mediators. In this review, we focus on the helical assemblies observed in the signaling pathways of RIG-I-like receptors (RLRs) and AIM2-like receptors (ALRs). We describe ligand-dependent oligomerization of receptor, receptor-dependent oligomerization of signaling adaptor molecules, and their functional implications and regulations.

  3. Terahertz radiation from a laser plasma filament

    SciTech Connect

    Wu, H.-C.; Meyer-ter-Vehn, J.; Ruhl, H.; Sheng, Z.-M.

    2011-03-15

    By the use of two-dimensional particle-in-cell simulations, we clarify the terahertz (THz) radiation mechanism from a plasma filament formed by an intense femtosecond laser pulse. The nonuniform plasma density of the filament leads to a net radiating current for THz radiation. This current is mainly located within the pulse and the first cycle of the wakefield. As the laser pulse propagates, a single-cycle and radially polarized THz pulse is constructively built up forward. The single-cycle shape is mainly due to radiation damping effect.

  4. Structure of Flexible Filamentous Plant Viruses

    SciTech Connect

    Kendall, Amy; McDonald, Michele; Bian, Wen; Bowles, Timothy; Baumgarten, Sarah C.; Shi, Jian; Stewart, Phoebe L.; Bullitt, Esther; Gore, David; Irving, Thomas C.; Havens, Wendy M.; Ghabrial, Said A.; Wall, Joseph S.; Stubbs, Gerald

    2008-10-23

    Flexible filamentous viruses make up a large fraction of the known plant viruses, but in comparison with those of other viruses, very little is known about their structures. We have used fiber diffraction, cryo-electron microscopy, and scanning transmission electron microscopy to determine the symmetry of a potyvirus, soybean mosaic virus; to confirm the symmetry of a potexvirus, potato virus X; and to determine the low-resolution structures of both viruses. We conclude that these viruses and, by implication, most or all flexible filamentous plant viruses share a common coat protein fold and helical symmetry, with slightly less than 9 subunits per helical turn.

  5. Global collapse of the DR21 filament

    NASA Astrophysics Data System (ADS)

    Schneider, N.; Csengeri, T.; Bontemps, S.; Motte, F.; Simon, R.; Hennebelle, P.; Federrath, C.; Klessen, R.

    2011-05-01

    The formation of massive stars is a highly complex process in which it is unclear whether the star-forming gas is in global gravitational collapse or an equilibrium state supported by turbulence and/or magnetic fields. By studying the most massive and dense star-forming clump in the Galaxy at a distance of less than 3 kpc, i.e. the filament containing DR21 and DR21(OH), we obtained observational evidence to help us to discriminate between these two views. For that, we used molecular line data from our 13CO 1→0, CS 2→1, and N_2H^+ 1→0 survey of the Cygnus X region (FCRAO) and high-angular resolution observations in isotopomeric lines of CO, CS, HCO^+, N_2H^+, and H_2CO, obtained with the IRAM 30m telescope. The observations reveal a complex velocity field and velocity dispersion in which regions of the highest column-density, i.e. dense cores, have a lower velocity dispersion than the surrounding gas and velocity gradients that are not (only) due to rotation. Infall signatures in optically thick line profiles of HCO^+ and 12CO are observed along and across the whole DR21 filament. By modelling the observed spectra, we obtain a typical infall speed of ˜0.6 km s-1 and mass accretion rates of the order of a few 10-3 M_⊙ yr-1 for the two main clumps constituting the filament. These massive clumps (4900 and 3300 M_⊙ at densities of around 10^5 cm-3 within 1 pc diameter) are both gravitationally contracting (with free-fall times much shorter than sound crossing times and low virial parameter α). The more massive of the clumps, DR21(OH), is connected to a sub-filament, apparently 'falling' onto the clump. This filament runs parallel to the magnetic field. All observed kinematic features in the DR21 filament (velocity field, velocity dispersion, and infall), its filamentary morphology, and the existence of (a) sub-filament(s) can be explained if the DR21 filament was formed by the convergence of flows on large scales and is now in a state of global gravitational

  6. Fatal congenital myopathy with actin filament deposits.

    PubMed

    Bornemann, A; Petersen, M B; Schmalbruch, H

    1996-07-01

    We present the clinical and morphological findings in a case of progressive congenital myopathy. The symptoms present at birth included severe general muscular hypotonia, diffuse muscular atrophy, arthrogryposis, absence of spontaneous movements, and left ventricular hypertrophy. A biopsy specimen taken from the gastrocnemius muscle when the patient was 2 weeks old revealed deposits which consisted of actin filaments as shown by electron microscopy. The infant was occasionally respirator dependent but was mostly able to breathe unassisted. At the age of 5 months he died of respiratory failure. The actin filament deposits may explain the clinical findings.

  7. Myosin binding protein-C activates thin filaments and inhibits thick filaments in heart muscle cells.

    PubMed

    Kampourakis, Thomas; Yan, Ziqian; Gautel, Mathias; Sun, Yin-Biao; Irving, Malcolm

    2014-12-30

    Myosin binding protein-C (MyBP-C) is a key regulatory protein in heart muscle, and mutations in the MYBPC3 gene are frequently associated with cardiomyopathy. However, the mechanism of action of MyBP-C remains poorly understood, and both activating and inhibitory effects of MyBP-C on contractility have been reported. To clarify the function of the regulatory N-terminal domains of MyBP-C, we determined their effects on the structure of thick (myosin-containing) and thin (actin-containing) filaments in intact sarcomeres of heart muscle. We used fluorescent probes on troponin C in the thin filaments and on myosin regulatory light chain in the thick filaments to monitor structural changes associated with activation of demembranated trabeculae from rat ventricle by the C1mC2 region of rat MyBP-C. C1mC2 induced larger structural changes in thin filaments than calcium activation, and these were still present when active force was blocked with blebbistatin, showing that C1mC2 directly activates the thin filaments. In contrast, structural changes in thick filaments induced by C1mC2 were smaller than those associated with calcium activation and were abolished or reversed by blebbistatin. Low concentrations of C1mC2 did not affect resting force but increased calcium sensitivity and reduced cooperativity of force and structural changes in both thin and thick filaments. These results show that the N-terminal region of MyBP-C stabilizes the ON state of thin filaments and the OFF state of thick filaments and lead to a novel hypothesis for the physiological role of MyBP-C in the regulation of cardiac contractility.

  8. Cores, Filaments, and Bundles: Hierarchical core formation in the B213 filament in Taurus

    NASA Astrophysics Data System (ADS)

    Hacar, Alvaro; Tafalla, Mario; Kauffmann, Jens; Kovacs, Attila

    2013-07-01

    Characterizing the dense core formation in filaments is a critical step for our understanding of the star formation process within molecular clouds. Using different molecular tracers to study the gas kinematics at different scales and density regimes, we have investigated the dense core formation in the B213/L1495 filament in Taurus, one of the most prominent structures identified in nearby clouds (see Hacar et al 2013, A&A, 554, A55). Our analysis of its internal kinematics demonstrates that this filament is actually a bundle of 35 velocity-coherent filaments, typically with lengths of ˜ 0.5 pc and oscillatory-like and sonic velocity field, each of them exhibiting linear masses close to the expected mass for a filament in hydrostatic equilibrium. Among them, only a small fraction of these filaments (˜1/4) are "fertile" and efficiently fragment forming all the cores identified within this region, while most of them (˜3/4) do not form cores and remain "sterile". Our observations then suggest that core formation in Taurus occurs in two steps. First, 0.5 pc-long velocity-coherent filaments condense out of the cloud gas, probably as a result of the turbulent cascade. After that, the dense cores condense quasi-statically in only those "fertile" filaments that have accumulated enough mass to became gravitational unstable, inheriting their kinematic properties. The formation of these velocity-coherent filaments appears therefore as a critical step on the star formation process being the first subsonic structures formed out of the turbulent regime that dominates the cloud dynamics at large scales.

  9. Flow-mediated interactions between two self-propelled flapping filaments in tandem configuration.

    PubMed

    Zhu, Xiaojue; He, Guowei; Zhang, Xing

    2014-12-01

    The mechanism by which aggregates of active swimmers are formed is an intriguing problem. In this Letter we show that, for two tandem self-propelled filaments driven by harmonic plunging motions of identical frequency and amplitude, stable configurations can be spontaneously formed by locking the trajectories onto the vortex centers. Further analysis indicates that the grouping energetics is also dictated by the wake vortex structure. The rationale behind the energetic advantage of the follower is found to be the interplay among actuation, self-propulsion, and the vortical fluid environment.

  10. A polypeptide of 59 kDa is associated with bundles of cytoplasmic filaments in Neurospora crassa.

    PubMed Central

    Rosa, A L; Alvarez, M E; Lawson, D; Maccioni, H J

    1990-01-01

    Complex arrangements of filamentous structures have been isolated from vegetative cells of the fungus Neurospora crassa. They were enriched by differential centrifugation and purified by permeation chromatography. The filamentous structures are made up of units of 8-10 nm diameter and were isolated in bundles of up to six to nine units. The main constituent of these structures is a polypeptide with an apparent molecular mass of 59 kDa (P59Nc), which represents 4-5% of the total N. crassa proteins. The filamentous structures are cold-stable and are not affected by high-ionic-strength solutions or by the presence of 10 mM-EDTA or 1% (w/v) Triton X-100; they were disassembled by raising the pH of the solution or by using Tris-based buffers. The disassembled form assembled into structures sedimentable at 105,000 g after dialysis against the isolation buffer. The sedimentable structures were organized in the form of regular aggregates of 42-45 nm polypeptides and reacted weakly with anti-IFA, a monoclonal antibody which recognizes an epitope common to many of the higher-eukaryote intermediate-filament polypeptides. Immunofluorescence examination of wall-digested hyphae of N. crassa using affinity-purified antibodies prepared against P59Nc showed immunostaining of abundant filamentous and dot-shaped structures distributed in the cytoplasm. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. Fig. 6. Fig. 7. PMID:2141976

  11. Proteins aggregation and human diseases

    NASA Astrophysics Data System (ADS)

    Hu, Chin-Kun

    2015-04-01

    Many human diseases and the death of most supercentenarians are related to protein aggregation. Neurodegenerative diseases include Alzheimer's disease (AD), Huntington's disease (HD), Parkinson's disease (PD), frontotemporallobar degeneration, etc. Such diseases are due to progressive loss of structure or function of neurons caused by protein aggregation. For example, AD is considered to be related to aggregation of Aβ40 (peptide with 40 amino acids) and Aβ42 (peptide with 42 amino acids) and HD is considered to be related to aggregation of polyQ (polyglutamine) peptides. In this paper, we briefly review our recent discovery of key factors for protein aggregation. We used a lattice model to study the aggregation rates of proteins and found that the probability for a protein sequence to appear in the conformation of the aggregated state can be used to determine the temperature at which proteins can aggregate most quickly. We used molecular dynamics and simple models of polymer chains to study relaxation and aggregation of proteins under various conditions and found that when the bending-angle dependent and torsion-angle dependent interactions are zero or very small, then protein chains tend to aggregate at lower temperatures. All atom models were used to identify a key peptide chain for the aggregation of insulin chains and to find that two polyQ chains prefer anti-parallel conformation. It is pointed out that in many cases, protein aggregation does not result from protein mis-folding. A potential drug from Chinese medicine was found for Alzheimer's disease.

  12. Questions Concerning the Disconnection and Eruption of Filaments and CMEs

    NASA Technical Reports Server (NTRS)

    Kucera, Theresa

    2007-01-01

    Reviews examples of eruptions and failed eruptions of filaments and CMEs and review questions concerning the processes and mechanisms involved. Where and how does disconnection occur? What can we learn (if anything!) about CME eruptions by observing related filament eruptions?

  13. Side-binding proteins modulate actin filament dynamics.

    PubMed

    Crevenna, Alvaro H; Arciniega, Marcelino; Dupont, Aurélie; Mizuno, Naoko; Kowalska, Kaja; Lange, Oliver F; Wedlich-Söldner, Roland; Lamb, Don C

    2015-01-01

    Actin filament dynamics govern many key physiological processes from cell motility to tissue morphogenesis. A central feature of actin dynamics is the capacity of filaments to polymerize and depolymerize at their ends in response to cellular conditions. It is currently thought that filament kinetics can be described by a single rate constant for each end. In this study, using direct visualization of single actin filament elongation, we show that actin polymerization kinetics at both filament ends are strongly influenced by the binding of proteins to the lateral filament surface. We also show that the pointed-end has a non-elongating state that dominates the observed filament kinetic asymmetry. Estimates of flexibility as well as effects on fragmentation and growth suggest that the observed kinetic diversity arises from structural alteration. Tuning elongation kinetics by exploiting the malleability of the filament structure may be a ubiquitous mechanism to generate a rich variety of cellular actin dynamics. PMID:25706231

  14. Dynamics of filament formation in a Kerr medium

    SciTech Connect

    Centurion, Martin; Pu Ye; Tsang, Mankei; Psaltis, Demetri

    2005-06-15

    We have studied the large-scale beam breakup and filamentation of femtosecond pulses in a Kerr medium. We have experimentally monitored the formation of stable light filaments, conical emission, and interactions between filaments. Three major stages lead to the formation of stable light filaments: First the beam breaks up into a pattern of connected lines (constellation), then filaments form on the constellations, and finally the filaments release a fraction of their energy through conical emission. We observed a phase transition to a faster filamentation rate at the onset of conical emission. We attribute this to the interaction of conical emissions with the constellation which creates additional filaments. Numerical simulations show good agreement with the experimental results.

  15. Rupture and recoil of bent-core liquid crystal filaments.

    PubMed

    Salili, S M; Ostapenko, T; Kress, O; Bailey, C; Weissflog, W; Harth, K; Eremin, A; Stannarius, R; Jákli, A

    2016-05-25

    The recoil process of free-standing liquid crystal filaments is investigated experimentally and theoretically. We focus on two aspects, the contraction speed of the filament and a spontaneously formed undulation instability. At the moment of rupture, the filaments buckle similarly to the classical Euler buckling of elastic rods. The tip velocity decays with decreasing filament length. The wavelength of buckling affinely decreases with the retracting filament tip. The energy gain related to the decrease of the total length and surface area of the filaments is mainly dissipated by layer rearrangements during thickening of the fibre. A flow back into the meniscus is relevant only in the final stage of the recoil process. We introduce a model for the quantitative description of the filament retraction speed. The dynamics of this recoil behaviour may find relevance as a model for biology-related filaments. PMID:27140824

  16. GRAVITATIONAL INFALL ONTO MOLECULAR FILAMENTS. II. EXTERNALLY PRESSURIZED CYLINDERS

    SciTech Connect

    Heitsch, Fabian

    2013-10-10

    Two aspects of the evolution of externally pressurized, hydrostatic filaments are discussed. (1) The free-fall accretion of gas onto such a filament will lead to filament parameters (specifically, FWHM-column-density relations) inconsistent with the observations of Arzoumanian et al., except for two cases: for low-mass, isothermal filaments, agreement is found as in the analysis by Fischera and Martin. Magnetized cases, for which the field scales weakly with the density as B∝n {sup 1/2}, also reproduce observed parameters. (2) Realistically, the filaments will be embedded not only in gas of non-zero pressure, but also of non-zero density. Thus, the appearance of sheet-embedded filaments is explored. Generating a grid of filament models and comparing the resulting column density ratios and profile shapes with observations suggests that the three-dimensional filament profiles are intrinsically flatter than isothermal, beyond projection and evolution effects.

  17. Using Drosophila for Studies of Intermediate Filaments.

    PubMed

    Bohnekamp, Jens; Cryderman, Diane E; Thiemann, Dylan A; Magin, Thomas M; Wallrath, Lori L

    2016-01-01

    Drosophila melanogaster is a useful organism for determining protein function and modeling human disease. Drosophila offers a rapid generation time and an abundance of genomic resources and genetic tools. Conservation in protein structure, signaling pathways, and developmental processes make studies performed in Drosophila relevant to other species, including humans. Drosophila models have been generated for neurodegenerative diseases, muscular dystrophy, cancer, and many other disorders. Recently, intermediate filament protein diseases have been modeled in Drosophila. These models have revealed novel mechanisms of pathology, illuminated potential new routes of therapy, and make whole organism compound screens feasible. The goal of this chapter is to outline steps to study intermediate filament function and model intermediate filament-associated diseases in Drosophila. The steps are general and can be applied to study the function of almost any protein. The protocols outlined here are for both the novice and experienced Drosophila researcher, allowing the rich developmental and cell biology that Drosophila offers to be applied to studies of intermediate filaments.

  18. Filament-wound composite vessel materials technology

    NASA Technical Reports Server (NTRS)

    Lark, R. F.

    1973-01-01

    Review of recent developments in advanced filament-wound fiber/resin composite vessel technology for cryogen and high-pressure gas containment applications. Design and fabrication procedures have been developed for small-diameter closed-end vessels equipped with thin elastomeric or thin metallic liners. Specific results are discussed.

  19. Conformational phases of membrane bound cytoskeletal filaments

    NASA Astrophysics Data System (ADS)

    Quint, David A.; Grason, Gregory; Gopinathan, Ajay

    2013-03-01

    Membrane bound cytoskeletal filaments found in living cells are employed to carry out many types of activities including cellular division, rigidity and transport. When these biopolymers are bound to a membrane surface they may take on highly non-trivial conformations as compared to when they are not bound. This leads to the natural question; What are the important interactions which drive these polymers to particular conformations when they are bound to a surface? Assuming that there are binding domains along the polymer which follow a periodic helical structure set by the natural monomeric handedness, these bound conformations must arise from the interplay of the intrinsic monomeric helicity and membrane binding. To probe this question, we study a continuous model of an elastic filament with intrinsic helicity and map out the conformational phases of this filament for various mechanical and structural parameters in our model, such as elastic stiffness and intrinsic twist of the filament. Our model allows us to gain insight into the possible mechanisms which drive real biopolymers such as actin and tubulin in eukaryotes and their prokaryotic cousins MreB and FtsZ to take on their functional conformations within living cells.

  20. Light sources based on semiconductor current filaments

    DOEpatents

    Zutavern, Fred J.; Loubriel, Guillermo M.; Buttram, Malcolm T.; Mar, Alan; Helgeson, Wesley D.; O'Malley, Martin W.; Hjalmarson, Harold P.; Baca, Albert G.; Chow, Weng W.; Vawter, G. Allen

    2003-01-01

    The present invention provides a new type of semiconductor light source that can produce a high peak power output and is not injection, e-beam, or optically pumped. The present invention is capable of producing high quality coherent or incoherent optical emission. The present invention is based on current filaments, unlike conventional semiconductor lasers that are based on p-n junctions. The present invention provides a light source formed by an electron-hole plasma inside a current filament. The electron-hole plasma can be several hundred microns in diameter and several centimeters long. A current filament can be initiated optically or with an e-beam, but can be pumped electrically across a large insulating region. A current filament can be produced in high gain photoconductive semiconductor switches. The light source provided by the present invention has a potentially large volume and therefore a potentially large energy per pulse or peak power available from a single (coherent) semiconductor laser. Like other semiconductor lasers, these light sources will emit radiation at the wavelength near the bandgap energy (for GaAs 875 nm or near infra red). Immediate potential applications of the present invention include high energy, short pulse, compact, low cost lasers and other incoherent light sources.

  1. Nonlinear Binormal Flow of Vortex Filaments

    NASA Astrophysics Data System (ADS)

    Strong, Scott; Carr, Lincoln

    2015-11-01

    With the current advances in vortex imaging of Bose-Einstein condensates occurring at the Universities of Arizona, São Paulo and Cambridge, interest in vortex filament dynamics is experiencing a resurgence. Recent simulations, Salman (2013), depict dissipative mechanisms resulting from vortex ring emissions and Kelvin wave generation associated with vortex self-intersections. As the local induction approximation fails to capture reconnection events, it lacks a similar dissipative mechanism. On the other hand, Strong&Carr (2012) showed that the exact representation of the velocity field induced by a curved segment of vortex contains higher-order corrections expressed in powers of curvature. This nonlinear binormal flow can be transformed, Hasimoto (1972), into a fully nonlinear equation of Schrödinger type. Continued transformation, Madelung (1926), reveals that the filament's square curvature obeys a quasilinear scalar conservation law with source term. This implies a broader range of filament dynamics than is possible with the integrable linear binormal flow. In this talk we show the affect higher-order corrections have on filament dynamics and discuss physical scales for which they may be witnessed in future experiments. Partially supported by NSF.

  2. Light bullets from a femtosecond filament

    NASA Astrophysics Data System (ADS)

    Chekalin, S. V.; Dokukina, A. E.; Dormidonov, A. E.; Kompanets, V. O.; Smetanina, E. O.; Kandidov, V. P.

    2015-05-01

    The scenario of the formation of light bullets in the presence of anomalous group velocity dispersion is presented within the same general scenario for condensed matter and humid air. The temporal and spectral parameters of light bullets during filamentation in fused silica and humid air are obtained. A light bullet (LB) is a short-lived formation in a femtosecond filament with a high spatiotemporal light field localization. The sequence formation of the quasi-periodical LB is obtained numerically and is confirmed experimentally by autocorrelation measurements of the LB’s duration. The estimation of the LB duration reaches few-cycle value. It is established that the generation of each LB is accompanied by the ejection of a supercontinuum (SC) in the visible spectrum and an isolated anti-Stokes wing is formed in the visible area of the SC as a result of destructive interference of broadband spectral components. It was found that the energy of a visible SC increases discretely according to the number of LBs in the filament. We demonstrated that the model of ionization in solid dielectric which is used in numerical simulation fundamentally affects the obtained scenario of LB formation. The possibility of the formation of LBs under the filamentation of middle-IR pulses in the atmosphere was shown with numerical simulation.

  3. The Apis mellifera filamentous virus genome

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A complete reference genome of the Apis mellifera Filamentous virus (AmFV) was determined using Illumina Hiseq sequencing. The AmFV genome is a double strand DNA molecule of approximately 498’500 nucleotides with a GC content of 50.8%. It encompasses 251 non overlapping open reading frames (ORFs), e...

  4. The Tidal Filament of NGC 4660

    NASA Astrophysics Data System (ADS)

    Kemp, S. N.; Martínez-Robles, C.; Márquez-Lugo, R. A.; Zepeda-García, D.; Franco-Hernández, R.; Nigoche-Netro, A.; Ramos-Larios, G.; Navarro, S. G.; Corral, L. J.

    2016-10-01

    NGC 4660, in the Virgo cluster, is a well-studied elliptical galaxy which has a strong disk component (D/T approximately 0.2–0.3). The central regions, including the disk component, have stellar populations approximately 12–13 Gyr in age, based on SAURON studies. However, we report the discovery of a long, narrow tidal filament associated with the galaxy, as seen in deep co-added Schmidt plate images and deep CCD frames, implying that the galaxy has undergone a tidal interaction and merger within the last few Gyr. The relative narrowness of the filament implies a wet merger with at least one spiral galaxy involved, but the current state of the system shows little evidence of such. However, a two-component photometric fit using GALFIT shows much bluer B-V colors for the disk component than for the elliptical component, which may represent a residual trace of enhanced star formation in the disk caused by the interaction 1–2 Gyr ago. There are brighter concentrations within the filament that resemble tidal dwarf galaxies, although they are at least 40 times fainter. These concentrations may represent faint, evolved versions of those galaxies. A previously detected stripped satellite galaxy south of the nucleus seen in our residual image may imply that the filament is a tidal stream produced by perigalactic passages of this satellite.

  5. Mechanical Heterogeneity Favors Fragmentation of Strained Actin Filaments

    PubMed Central

    De La Cruz, Enrique M.; Martiel, Jean-Louis; Blanchoin, Laurent

    2015-01-01

    We present a general model of actin filament deformation and fragmentation in response to compressive forces. The elastic free energy density along filaments is determined by their shape and mechanical properties, which were modeled in terms of bending, twisting, and twist-bend coupling elasticities. The elastic energy stored in filament deformation (i.e., strain) tilts the fragmentation-annealing reaction free-energy profile to favor fragmentation. The energy gradient introduces a local shear force that accelerates filament intersubunit bond rupture. The severing protein, cofilin, renders filaments more compliant in bending and twisting. As a result, filaments that are partially decorated with cofilin are mechanically heterogeneous (i.e., nonuniform) and display asymmetric shape deformations and energy profiles distinct from mechanically homogenous (i.e., uniform), bare actin, or saturated cofilactin filaments. The local buckling strain depends on the relative size of the compliant segment as well as the bending and twisting rigidities of flanking regions. Filaments with a single bare/cofilin-decorated boundary localize energy and force adjacent to the boundary, within the compliant cofilactin segment. Filaments with small cofilin clusters were predicted to fragment within the compliant cofilactin rather than at boundaries. Neglecting contributions from twist-bend coupling elasticity underestimates the energy density and gradients along filaments, and thus the net effects of filament strain to fragmentation. Spatial confinement causes compliant cofilactin segments and filaments to adopt higher deformation modes and store more elastic energy, thereby promoting fragmentation. The theory and simulations presented here establish a quantitative relationship between actin filament fragmentation thermodynamics and elasticity, and reveal how local discontinuities in filament mechanical properties introduced by regulatory proteins can modulate both the severing efficiency

  6. SMART Observation of Magnetic Helicity in Solar Filaments

    NASA Astrophysics Data System (ADS)

    Hagino, M.; Kitai, R.; Shibata, K.

    2006-08-01

    We examined the magnetic helicity of solar filaments from their structure in the chromosphere and corona. The H-alpha telescope of the Solar Magnetic Activity Research Telescope (SMART) observed 239 intermediate filaments from 2005 July 1 to 2006 May 15. The intermediate filament usually locates between two active regions. Using these images, we identified the filament spine and its barbs, and determined the chromospheric filament helicity from the mean angle between each barbs and a spine. We found that 71% (78 of 110) of intermediate filaments in the northern hemisphere are negative helicity and 67% (87 of 129) of filaments in the southern hemisphere are positive, which agreed with the well-known hemispheric tendency of the magnetic helicity. Additionally, we studied the coronal helicity of intermediate filaments. The coronal filament helicity is defined as the crossing angle of threads formed a filament. The helicity pattern of coronal filaments obtained with EIT/SOHO 171A also shows the helicity hemispheric tendency. Namely, 65% (71 of 110) of coronal filaments in the northern hemisphere exhibit negative helicity and the 65% (84 of 129) of filaments in the southern hemisphere show negative helicity. These data were observed in the same day with the SMART H-alpha data. Moreover, we found 12 filament eruptions in our data. The 7 of 12 filaments show the clear opposite sign of the hemispheric tendency of the magnetic helicity. The helicity seems to be change during temporal evolution. This results suggest that filament instability may be driven by the opposite sign helicity injection from the foot point of the barb.

  7. Dynamics of fire ant aggregations

    NASA Astrophysics Data System (ADS)

    Tennenbaum, Michael; Hu, David; Fernandez-Nieves, Alberto

    Fire ant aggregations are an inherently active system. Each ant harvests its own energy and can convert it into motion. The motion of individual ants contributes non-trivially to the bulk material properties of the aggregation. We have measured some of these properties using plate-plate rheology, where the response to an applied external force or deformation is measured. In this talk, we will present data pertaining to the aggregation behavior in the absence of any external force. We quantify the aggregation dynamics by monitoring the rotation of the top plate and by measuring the normal force. We then compare the results with visualizations of 2D aggregations.

  8. Peculair Abundances in the Crab Nebula's Filaments

    NASA Astrophysics Data System (ADS)

    Fesen, Robert A.

    Investigations into the elemental abundances of supernova remnants can provide invaluable information concerning the properties of the progenitor star as well as details of stellar nucleosynthesis. In this regard, the Crab Nebula is especially useful, it being the youngest supernova remnant observable with IUE. Despite being fairly heavily reddened, UV emission-lines from its filaments have been successfully obtained many times early in the history of IUE. These UV spectra provided important and unique data for determining elemental composition of the filamentary ejecta, especially for C, N, and O. Analysis of these data by Davidson et al (1982) indicated nearly solar C/O and N/O ratios despite the large general enrichment of helium in the remnant. Although not realized at the time, there is considerable recent evidence which indicates that significant abundance variations do exist among the filaments. The strongest anomalies in composition are puzzlingly confined to a few relatively bright northern filaments which exhibit nearly solar He abundance yet show possibly large Ni enrichment. If we hope to understand the elemental composition of remnants in general and the Crab Nebula in particular, we then need to determine the composition of these peculiar filaments and to what extent they differ from the rest of the remnant. Towards that goal, we therefore propose to obtain IUE low dispersion SWP spectra on the brightest of these peculiar filaments where we have already obtained matching optical data. Analysis will follow that of Davidson el al but with much more detailed photoionization models for the Crab already developed by us. These data should help determine the true range of abundances present in the Crab's filamentary ejecta.

  9. Electric events synchronized with laser filaments in thunderclouds.

    PubMed

    Kasparian, Jérôme; Ackermann, Roland; André, Yves-Bernard; Méchain, Grégoire; Méjean, Guillaume; Prade, Bernard; Rohwetter, Philipp; Salmon, Estelle; Stelmaszczyk, Kamil; Yu, Jin; Mysyrowicz, André; Sauerbrey, Roland; Wöste, Ludger; Wolf, Jean-Pierre

    2008-04-14

    We investigated the possibility to trigger real-scale lightning using ionized filaments generated by ultrashort laser pulses in the atmosphere. Under conditions of high electric field during two thunderstorms, we observed a statistically significant number of electric events synchronized with the laser pulses, at the location of the filaments. This observation suggests that corona discharges may have been triggered by filaments. PMID:18542684

  10. Solar filament material oscillations and drainage before eruption

    SciTech Connect

    Bi, Yi; Jiang, Yunchun; Yang, Jiayan; Hong, Junchao; Li, Haidong; Yang, Dan; Yang, Bo

    2014-08-01

    Both large-amplitude longitudinal (LAL) oscillations and material drainage in a solar filament are associated with the flow of material along the filament axis, often followed by an eruption. However, the relationship between these two motions and a subsequent eruption event is poorly understood. We analyze a filament eruption using EUV imaging data captured by the Atmospheric Imaging Array on board the Solar Dynamics Observatory and the Hα images from the Global Oscillation Network Group. Hours before the eruption, the filament was activated, with one of its legs undergoing a slow rising motion. The asymmetric activation inclined the filament relative to the solar surface. After the active phase, LAL oscillations were observed in the inclined filament. The oscillation period increased slightly over time, which may suggest that the magnetic fields supporting the filament evolve to be flatter during the slow rising phase. After the oscillations, a significant amount of filament material was drained toward one filament endpoint, followed immediately by the violent eruption of the filament. The material drainage may further support the change in magnetic topology prior to the eruption. Moreover, we suggest that the filament material drainage could play a role in the transition from a slow to a fast rise of the erupting filament.

  11. Filamentary structures in dense plasma focus: Current filaments or vortex filaments?

    SciTech Connect

    Soto, Leopoldo Pavez, Cristian; Moreno, José; Castillo, Fermin; Veloso, Felipe; Auluck, S. K. H.

    2014-07-15

    Recent observations of an azimuthally distributed array of sub-millimeter size sources of fusion protons and correlation between extreme ultraviolet (XUV) images of filaments with neutron yield in PF-1000 plasma focus have re-kindled interest in their significance. These filaments have been described variously in literature as current filaments and vortex filaments, with very little experimental evidence in support of either nomenclature. This paper provides, for the first time, experimental observations of filaments on a table-top plasma focus device using three techniques: framing photography of visible self-luminosity from the plasma, schlieren photography, and interferometry. Quantitative evaluation of density profile of filaments from interferometry reveals that their radius closely agrees with the collision-less ion skin depth. This is a signature of relaxed state of a Hall fluid, which has significant mass flow with equipartition between kinetic and magnetic energy, supporting the “vortex filament” description. This interpretation is consistent with empirical evidence of an efficient energy concentration mechanism inferred from nuclear reaction yields.

  12. Self-assembled aggregates in the gravitational field: Growth and nematic order

    NASA Astrophysics Data System (ADS)

    Baulin, Vladimir A.

    2003-08-01

    The influence of the gravitational field on the reversible process of assembly and disassembly of linear aggregates is the focus of this paper. Even the earth gravitational field can affect the equilibrium properties of heavy biological aggregates such as microtubules or actin filaments. The gravity gives rise to the concentration gradient which results in the distribution of aggregates of different lengths with height. Strong enough gravitational field induces the overall growth of the aggregates. The gravitational field facilitates the isotropic to nematic phase transition reflecting in a broader transition region. Coexisting phases have notedly different length distributions and the phase transition represents the interplay between the growth in the isotropic phase and the precipitation into nematic phase. The fields in an ultracentrifuge can only reinforce the effect of gravity, so the present description can be applied to a wider range of systems.

  13. Kinetics of protein aggregation

    NASA Astrophysics Data System (ADS)

    Knowles, Tuomas

    2015-03-01

    Aggregation into linear nanostructures, notably amyloid and amyloid-like fibrils, is a common form of behaviour exhibited by a range of peptides and proteins. This process was initially discovered in the context of the aetiology of a range of neurodegenerative diseases, but has recently been recognised to of general significance and has been found at the origin of a number of beneficial functional roles in nature, including as catalytic scaffolds and functional components in biofilms. This talk discusses our ongoing efforts to study the kinetics of linear protein self-assembly by using master equation approaches combined with global analysis of experimental data.

  14. Structure of Viral Aggregates

    NASA Astrophysics Data System (ADS)

    Barr, Stephen; Luijten, Erik

    2010-03-01

    The aggregation of virus particles is a particular form of colloidal self-assembly, since viruses of a give type are monodisperse and have identical, anisotropic surface charge distributions. In small-angle X-ray scattering experiments, the Qbeta virus was found to organize in different crystal structures in the presence of divalent salt and non-adsorbing polymer. Since a simple isotropic potential cannot explain the occurrence of all observed phases, we employ computer simulations to investigate how the surface charge distribution affects the virus interactions. Using a detailed model of the virus particle, we find an asymmetric ion distribution around the virus which gives rise to the different phases observed.

  15. Cellular Models of Aggregation-dependent Template-directed Proteolysis to Characterize Tau Aggregation Inhibitors for Treatment of Alzheimer Disease*

    PubMed Central

    Harrington, Charles R.; Storey, John M. D.; Clunas, Scott; Harrington, Kathleen A.; Horsley, David; Ishaq, Ahtsham; Kemp, Steven J.; Larch, Christopher P.; Marshall, Colin; Nicoll, Sarah L.; Rickard, Janet E.; Simpson, Michael; Sinclair, James P.; Storey, Lynda J.; Wischik, Claude M.

    2015-01-01

    Alzheimer disease (AD) is a degenerative tauopathy characterized by aggregation of Tau protein through the repeat domain to form intraneuronal paired helical filaments (PHFs). We report two cell models in which we control the inherent toxicity of the core Tau fragment. These models demonstrate the properties of prion-like recruitment of full-length Tau into an aggregation pathway in which template-directed, endogenous truncation propagates aggregation through the core Tau binding domain. We use these in combination with dissolution of native PHFs to quantify the activity of Tau aggregation inhibitors (TAIs). We report the synthesis of novel stable crystalline leucomethylthioninium salts (LMTX®), which overcome the pharmacokinetic limitations of methylthioninium chloride. LMTX®, as either a dihydromesylate or a dihydrobromide salt, retains TAI activity in vitro and disrupts PHFs isolated from AD brain tissues at 0.16 μm. The Ki value for intracellular TAI activity, which we have been able to determine for the first time, is 0.12 μm. These values are close to the steady state trough brain concentration of methylthioninium ion (0.18 μm) that is required to arrest progression of AD on clinical and imaging end points and the minimum brain concentration (0.13 μm) required to reverse behavioral deficits and pathology in Tau transgenic mice. PMID:25759392

  16. Conformation determines the seeding potencies of native and recombinant Tau aggregates.

    PubMed

    Falcon, Benjamin; Cavallini, Annalisa; Angers, Rachel; Glover, Sarah; Murray, Tracey K; Barnham, Luanda; Jackson, Samuel; O'Neill, Michael J; Isaacs, Adrian M; Hutton, Michael L; Szekeres, Philip G; Goedert, Michel; Bose, Suchira

    2015-01-01

    Intracellular Tau inclusions are a pathological hallmark of several neurodegenerative diseases, collectively known as the tauopathies. They include Alzheimer disease, tangle-only dementia, Pick disease, argyrophilic grain disease, chronic traumatic encephalopathy, progressive supranuclear palsy, and corticobasal degeneration. Tau pathology appears to spread through intercellular propagation, requiring the formation of assembled "prion-like" species. Several cell and animal models have been described that recapitulate aspects of this phenomenon. However, the molecular characteristics of seed-competent Tau remain unclear. Here, we have used a cell model to understand the relationships between Tau structure/phosphorylation and seeding by aggregated Tau species from the brains of mice transgenic for human mutant P301S Tau and full-length aggregated recombinant P301S Tau. Deletion of motifs (275)VQIINK(280) and (306)VQIVYK(311) abolished the seeding activity of recombinant full-length Tau, suggesting that its aggregation was necessary for seeding. We describe conformational differences between native and synthetic Tau aggregates that may account for the higher seeding activity of native assembled Tau. When added to aggregated Tau seeds from the brains of mice transgenic for P301S Tau, soluble recombinant Tau aggregated and acquired the molecular properties of aggregated Tau from transgenic mouse brain. We show that seeding is conferred by aggregated Tau that enters cells through macropinocytosis and seeds the assembly of endogenous Tau into filaments. PMID:25406315

  17. The intermediate-sized filaments in rat kangaroo PtK2 cells. I. Morphology in situ.

    PubMed

    Franke, W W; Grund, C; Osborn, M; Weber, K

    1978-08-01

    The system of the intermediate-sized filaments (IF) of rat kangaroo PtK2 cells which can be specifically demonstrated by immunofluorescence microscopy using certain rabbit autoantibodies and guinea pig antibodies against bovine hoof prekeratin has been studied by electron microscopy. The characteristic ornamental, curved arrays of this system are shown after fixation in situ in both thin sections and whole-cell-preparations to represent bundles of 6 to 11 nm thick filaments extending through the whole cytoplasm, although in some cells they appear to be enriched in the perinuclear region. While many individual IF are recognized in the cytoplasm the tendency of such filaments to aggregate laterally into bundles is one of their prominent features. Among such bundle formations one form that consists of tightly packed IF cemented together in a dense osmiophilic matrix is especially conspicious. The appearance and mode of arrangement of the IF is not significantly altered in cells treated with colcemid and/or cytochalasin B. Spatial relationships of IF with microfilament-containing cables and microtubules as well as with membranous structures are also described. IF are heterogeneous in width and reveal an unstained, apparently hollow core, indicative of a tubular organization. Many IF show small, sometimes periodically arranged lateral projections which seem to be involved in IF cross-linking. Associations with polyribosomes are common. The changes in the IF system during mitosis have also been examined. The structural details of the IF as well as their possible role as cytoskeletal elements involved in the control of cell shape and cytoplasmic architecture are discussed in relation to data on various intermediate-sized filaments from other cell types. The close similarity of the IF of PtK2 cells to aggregates of prekeratin filaments is emphasized. It is suggested that PtK2 cells represent an epithelial cell line growing in a state of balanced semi-keratinization.

  18. Aggregation of f-actin in olfactory glomeruli: a common feature of glomeruli across phyla.

    PubMed

    Rössler, Wolfgang; Kuduz, Josko; Schürmann, Friedrich W; Schild, Detlev

    2002-11-01

    Using fluorophore-conjugated phalloidin, we show that filamentous (F)-actin is strongly aggregated in olfactory glomeruli within primary olfactory centers of vertebrates and insects. Our comparative study demonstrates that aggregation of F-actin is a common feature of glomeruli across phyla, and is independent of glomerular architecture and/or the presence or absence of cellular borders around glomeruli formed by neurons or glial cells. The distribution of F-actin in axonal and dendritic compartments within glomeruli, however, appears different between vertebrates and insects. The potential role of the actin-based cytoskeleton in synaptic and structural plasticity within glomeruli is discussed. PMID:12438205

  19. The organization of the microtubule associated protein tau in Alzheimer paired helical filaments.

    PubMed

    Ruben, G C; Iqbal, K; Grundke-Iqbal, I; Johnson, J E

    1993-01-29

    The structural relationship of the microtubule associated protein tau to paired helical filaments (PHF) was examined by high resolution transmission electron microscopy (TEM) without treatment with any chemical fixatives. Neurofibrillary tangles (NFT) were isolated in the absence of detergent from Alzheimer diseased brains, were freeze-dried, and were vertically platinum-carbon replicated for TEM. The PHF we observed made one helical turn (L) in 74 +/- 8.5 nm and had a wide region (W) of 14.8 +/- 0.6 nm similar to PHF previously modeled with a periodic morphology. The PHF thin region (T) measured approximately 2.4 nm, approximately 4.9 nm, approximately 7.4 nm and approximately 9.7 nm and the most often observed width was approximately 2.4 nm. No surface features regularly divide the PHF into two filaments. Morphologically the PHF are thin helical ribbons with an often observed thickness of approximately 2.4 nm. At high magnification, approximately 1.0 nm and some approximately 0.4 nm strands identical to normal and denatured tau monomer covered PHF surfaces and were aggregated in non-periodic fashion. Bovine tau polymer approximately 2.1 nm diameter filaments, trapped on a filter, were partially heat denatured and showed some of the morphological features of PHF.

  20. Taurine and platelet aggregation

    SciTech Connect

    Nauss-Karol, C.; VanderWende, C.; Gaut, Z.N.

    1986-03-01

    Taurine is a putative neurotransmitter or neuromodulator. The endogenous taurine concentration in human platelets, determined by amino acid analysis, is 15 ..mu..M/g. In spite of this high level, taurine is actively accumulated. Uptake is saturable, Na/sup +/ and temperature dependent, and suppressed by metabolic inhibitors, structural analogues, and several classes of centrally active substances. High, medium and low affinity transport processes have been characterized, and the platelet may represent a model system for taurine transport in the CNS. When platelets were incubated with /sup 14/C-taurine for 30 minutes, then resuspended in fresh medium and reincubated for one hour, essentially all of the taurine was retained within the cells. Taurine, at concentrations ranging from 10-1000 ..mu..M, had no effect on platelet aggregation induced by ADP or epinephrine. However, taurine may have a role in platelet aggregation since 35-39% of the taurine taken up by human platelets appears to be secreted during the release reaction induced by low concentrations of either epinephrine or ADP, respectively. This release phenomenon would imply that part of the taurine taken up is stored directly in the dense bodies of the platelet.

  1. Laser filamentation induced bubbles and their motion in water.

    PubMed

    Liu, Fengjiang; Yuan, Shuai; Zuo, Zhong; Li, Wenxue; Ding, Liang'en; Zeng, Heping

    2016-06-13

    We demonstrate femtosecond filamentation induced convection in water by using a microscope directly observing the dynamic processes of the generated bubbles on a macroscopic time scale. The bubbles are driven by the filament in water and do directional movements. The angles between the bubbles' moving directions and the laser propagation direction varied at different positions along the filament, exhibiting a fusiform distribution. It indicates a fluid dynamic phenomenon depending on the local filament intensity, and reveals the convection processes induced by filamentation in water indirectly. PMID:27410343

  2. The structures, mass motions and footpoints of solar filaments

    NASA Astrophysics Data System (ADS)

    Venkataramanasastry, Aparna

    This thesis focuses on identifying the mechanism by which solar filaments acquire mass. Some of the speculations for how a filament gets its mass are 1) injection of mass from the chromosphere into the filament structure, and 2) condensation of mass from the corona into the region of the filament channel. Mass motion at the footpoints of the filaments is studied to detect mass entering and leaving the filament body. The magnetic properties of the footpoints of the filaments are also studied. Recommendations are drawn by comparing observational properties obtained in this study with the features used in some of the previously developed models. The datasets used for this study are high-resolution image sets of centerline and Doppler wings of Halpha, obtained using the Dutch Open Telescope (DOT). The data were obtained on Oct 30, 2010. The data set contains three filaments in an active region in the northern hemisphere of the Sun. The images in each wavelength are aligned and made into movies to find the footpoints of the filaments through which the mass goes into and comes out of the filaments from and to the chromosphere, respectively. The magnetic properties of the footpoints are studied by overlaying the magnetogram images with the DOT images by using full-disk Halpha images for matching the features in the two. Of the three filaments, one of the filaments is observed to be stable throughout the duration of the observations; another filament erupts after about two hours of the beginning of observations; and the third filament is in its early stages of formation. The ends of the stable filament are clearly observed whereas the ends of the erupting filament and the forming filament are observed clearly intermittently during the duration of the observations. The animations of the region near the ends of filament 1 reveal definite injection and draining of mass via the footpoints into and out of the filament. The mass motion into and out of the filaments are observed

  3. A Comparison Study of an Active Region Eruptive Filament and a Neighboring Non-Eruptive Filament

    NASA Astrophysics Data System (ADS)

    Wu, S. T.; Jiang, C.; Feng, X. S.; Hu, Q.

    2014-12-01

    We perform a comparison study of an eruptive filament in the core region of AR 11283 and a nearby non-eruptive filament. The coronal magnetic field supporting these two filaments is extrapolated using our data-driven CESE-MHD-NLFFF code (Jiang et al. 2013, Jiang etal. 2014), which presents two magnetic flux ropes (FRs) in the same extrapolation box. The eruptive FR contains a bald-patch separatrix surface (BPSS) spatially co-aligned very well with a pre-eruption EUV sigmoid, which is consistent with the BPSS model for the coronal sigmoids. The numerically reproduced magnetic dips of the FRs match observations of the filaments strikingly well, which supports strongly the FR-dip model for filaments. The FR that supports the AR eruptive filament is much smaller (with a length of 3 Mm) compared with the large-scale FR holding the quiescent filament (with a length of 30 Mm). But the AR eruptive FR contains most of the magnetic free energy in the extrapolation box and holds a much higher magnetic energy density than the quiescent FR, because it resides along the main polarity inversion line (PIL) around sunspots with strong magnetic shear. Both the FRs are weakly twisted and cannot trigger kink instability. The AR eruptive FR is unstable because its axis reaches above a critical height for torus instability (TI), at which the overlying closed arcades can no longer confine the FR stably. To the contrary, the quiescent FR is firmly held down by its overlying field, as its axis apex is far below the TI threshold height. (This work is partially supported by NSF AGS-1153323 and 1062050)

  4. Interaction between titin and thin filaments in intact cardiac muscle.

    PubMed

    Trombitás, K; Greaser, M L; Pollack, G H

    1997-06-01

    A 'freeze break' technique and immunoelectron microscopy were used to study the elastic properties of cardiac titin filaments. Small bundles consisting of a few fibres from freshly prepared dog papillary muscle were quickly frozen and broken under liquid nitrogen to fracture sarcomeres in planes perpendicular to the filament axes. Breaks occurred at each of several regions along the sarcomeres. The still-frozen specimens were thawed during fixation to allow elastic filaments to retract. The broken muscle segments were then treated with monoclonal titin antibody 9D10 which labelled a unique epitope in the I-band. In sarcomeres broken at the A-I junction, the titin filaments reacted toward the Z-line, independently of the thin filaments. The retracted epitopes did not reach the Z-line; retraction stopped at the N1-line level. In sarcomeres broken near the Z-line, the titin filaments retracted in the opposite direction, to the tip of the thick filaments. When the break occurred in the A-band, by contrast, the titin-epitope position was unaffected. On the basis of these results, and despite the reported interaction of titin and actin in vitro, it appears that cardiac titin molecules form elastic filaments that are functionally independent of the thin filaments. Near the Z-line, however, the titin filaments seem to associate firmly with the thin filaments. PMID:9172076

  5. High-Resolution Observations of Sympathetic Filament Eruptions by NVST

    NASA Astrophysics Data System (ADS)

    Su, Yingna; Li, Shangwei; Zhou, Tuanhui; Ji, Haisheng

    2016-05-01

    We investigate the sympathetic eruptions of two solar filaments side by side as observed by the New Vacuum Solar Telescope (NVST) on 2015 October 15. These two filaments start from the complex active region NOAA 12434 (north) and end in a large quiescent region (south). The corresponding SDO/HMI magnetic field observations suggest that the two small filaments are located above two different polarity inversion lines in the northern part. The SDO/AIA observations of the eruption show that these two filaments appear to merge into one in the southern quiescent region. The north-eastern filament starts eruption firstly, which is followed by the north-western filament eruption about 20 minutes later. Clear untwisting motions (i.e., signature of flux ropes) are observed in both filaments during the eruption. After the lifts off of the north-western filament, mini filaments are observed to emerge from the surface and rise up multiple times. The high-resolution observations reveal the fact that the filament is composed of multiple sections and multiple layers. The filament in the lower layer can merge into the upper layer, which leads to the increase of non-potentiality of the upper layer. Magnetic field models using the flux rope insertion method are also constructed in order to understand the complex magnetic configuration as well as the initiation and dynamics of the eruptions.

  6. Transition from linear- to nonlinear-focusing regime in filamentation

    PubMed Central

    Lim, Khan; Durand, Magali; Baudelet, Matthieu; Richardson, Martin

    2014-01-01

    Laser filamentation in gases is often carried out in the laboratory with focusing optics to better stabilize the filament, whereas real-world applications of filaments frequently involve collimated or near-collimated beams. It is well documented that geometrical focusing can alter the properties of laser filaments and, consequently, a transition between a collimated and a strongly focused filament is expected. Nevertheless, this transition point has not been identified. Here, we propose an analytical method to determine the transition, and show that it corresponds to an actual shift in the balance of physical mechanisms governing filamentation. In high-NA conditions, filamentation is primarily governed by geometrical focusing and plasma effects, while the Kerr nonlinearity plays a more significant role as NA decreases. We find the transition between the two regimes to be relatively insensitive to the intrinsic laser parameters, and our analysis agrees well with a wide range of parameters found in published literature. PMID:25434678

  7. The Dark Matter filament between Abell 222/223

    NASA Astrophysics Data System (ADS)

    Dietrich, Jörg P.; Werner, Norbert; Clowe, Douglas; Finoguenov, Alexis; Kitching, Tom; Miller, Lance; Simionescu, Aurora

    2016-10-01

    Weak lensing detections and measurements of filaments have been elusive for a long time. The reason is that the low density contrast of filaments generally pushes the weak lensing signal to unobservably low scales. To nevertheless map the dark matter in filaments exquisite data and unusual systems are necessary. SuprimeCam observations of the supercluster system Abell 222/223 provided the required combination of excellent seeing images and a fortuitous alignment of the filament with the line-of-sight. This boosted the lensing signal to a detectable level and led to the first weak lensing mass measurement of a large-scale structure filament. The filament connecting Abell 222 and Abell 223 is now the only one traced by the galaxy distribution, dark matter, and X-ray emission from the hottest phase of the warm-hot intergalactic medium. The combination of these data allows us to put the first constraints on the hot gas fraction in filaments.

  8. COMPLEX FLARE DYNAMICS INITIATED BY A FILAMENT–FILAMENT INTERACTION

    SciTech Connect

    Zhu, Chunming; McAteer, R. T. James; Liu, Rui; Alexander, David; Sun, Xudong

    2015-11-01

    We report on an eruption involving a relatively rare filament–filament interaction on 2013 June 21, observed by SDO and STEREO-B. The two filaments were separated in height with a “double-decker” configuration. The eruption of the lower filament began simultaneously with a descent of the upper filament, resulting in a convergence and direct interaction of the two filaments. The interaction was accompanied by the heating of surrounding plasma and an apparent crossing of a loop-like structure through the upper filament. The subsequent coalescence of the filaments drove a bright front ahead of the erupting structures. The whole process was associated with a C3.0 flare followed immediately by an M2.9 flare. Shrinking loops and descending dark voids were observed during the M2.9 flare at different locations above a C-shaped flare arcade as part of the energy release, giving us unique insight into the flare dynamics.

  9. Ultraminiature broadband light source with spiral shaped filament

    NASA Technical Reports Server (NTRS)

    Tuma, Margaret L. (Inventor); Collura, Joseph S. (Inventor); Helvajian, Henry (Inventor); Pocha, Michael D. (Inventor); Meyer, Glenn A. (Inventor); McConaghy, Charles F. (Inventor); Olsen, Barry L. (Inventor); Hansen, William W (Inventor)

    2012-01-01

    An ultraminiature light source using a double-spiral shaped tungsten filament includes end contact portions which are separated to allow for radial and length-wise unwinding of the spiral. The double-spiral filament is spaced relatively far apart at the end portions thereof so that contact between portions of the filament upon expansion is avoided. The light source is made by fabricating a double-spiral ultraminiature tungsten filament from tungsten foil and housing the filament in a ceramic package having a reflective bottom and a well wherein the filament is suspended. A vacuum furnace brazing process attaches the filament to contacts of the ceramic package. Finally, a cover with a transparent window is attached onto the top of the ceramic package by solder reflow in a second vacuum furnace process to form a complete hermetically sealed package.

  10. Modeling the interplay between protein and lipid aggregation in supported membranes.

    PubMed

    de Prado Salas, Pablo González; Encinar, Mario; Alonso, Alvaro; Vélez, Marisela; Tarazona, Pedro

    2015-01-01

    We present a theoretical model that deals with the complex interplay between lipid segregation and the self-aggregation of lipid-attached proteins. The model, in contrast to previous ones that consider proteins only as passive elements affecting the lipid distribution, describes the system including three terms: the dynamic interactions between protein monomers, the interactions between lipid components, and a mixed term considering protein-lipid interactions. It is used to explain experimental results performed on a well-defined system in which a self-aggregating soluble bacterial cytoskeletal protein polymerizes on a lipid bilayer containing two lipid components. All the elements considered in a previously described protein model, including torsion of the monomers within the filament, are needed to account for the observed filament shapes. The model also points out that lipid segregation can affect the length and curvature of the filaments and that the dynamic behavior of the lipids and proteins can have different time scales, giving rise to memory effects. This simple model that considers a dynamic protein assembly on a fluid and active lipid surface can be easily extended to other biologically relevant situations in which the interplay between protein and lipid aggregation is needed to fully describe the system. PMID:24968242

  11. Modeling the interplay between protein and lipid aggregation in supported membranes.

    PubMed

    de Prado Salas, Pablo González; Encinar, Mario; Alonso, Alvaro; Vélez, Marisela; Tarazona, Pedro

    2015-01-01

    We present a theoretical model that deals with the complex interplay between lipid segregation and the self-aggregation of lipid-attached proteins. The model, in contrast to previous ones that consider proteins only as passive elements affecting the lipid distribution, describes the system including three terms: the dynamic interactions between protein monomers, the interactions between lipid components, and a mixed term considering protein-lipid interactions. It is used to explain experimental results performed on a well-defined system in which a self-aggregating soluble bacterial cytoskeletal protein polymerizes on a lipid bilayer containing two lipid components. All the elements considered in a previously described protein model, including torsion of the monomers within the filament, are needed to account for the observed filament shapes. The model also points out that lipid segregation can affect the length and curvature of the filaments and that the dynamic behavior of the lipids and proteins can have different time scales, giving rise to memory effects. This simple model that considers a dynamic protein assembly on a fluid and active lipid surface can be easily extended to other biologically relevant situations in which the interplay between protein and lipid aggregation is needed to fully describe the system.

  12. Morgellons disease: a filamentous borrelial dermatitis

    PubMed Central

    Middelveen, Marianne J; Stricker, Raphael B

    2016-01-01

    Morgellons disease (MD) is a dermopathy characterized by multicolored filaments that lie under, are embedded in, or project from skin. Although MD was initially considered to be a delusional disorder, recent studies have demonstrated that the dermopathy is associated with tickborne infection, that the filaments are composed of keratin and collagen, and that they result from proliferation of keratinocytes and fibroblasts in epithelial tissue. Culture, histopathological and molecular evidence of spirochetal infection associated with MD has been presented in several published studies using a variety of techniques. Spirochetes genetically identified as Borrelia burgdorferi sensu stricto predominate as the infective agent in most of the Morgellons skin specimens studied so far. Other species of Borrelia including Borrelia garinii, Borrelia miyamotoi, and Borrelia hermsii have also been detected in skin specimens taken from MD patients. The optimal treatment for MD remains to be determined. PMID:27789971

  13. Statistical study of solar filaments since 1919

    NASA Astrophysics Data System (ADS)

    Aboudarham, Jean

    2016-04-01

    Science board of Paris Observatory funded the data capture of tables associated with Meudon synoptic maps of Solar activity, which were published for observations ranging from 1919 to 1992. The EU HELIO project developed automatic recognition codes, especially concerning filaments based on observations between 1996 en 2014 (and soon, up to now). We plan to fill the gap between the two catalogues in the short term. But it is already possible to study filaments behavior over quite long periods of time. We present here the first series of results obtained from this analysis which give some clue about the way Solar activity behaves in various parts of the cycle, and about the way if depends on the hemisphere where activity occurs. This information could then be correlated with events catalogues (e.g. flares, CMEs, …) in order to link those phenomena with concrete Solar activity.

  14. Experiments on the Propagation of Plasma Filaments

    SciTech Connect

    Katz, Noam; Egedal, Jan; Fox, Will; Le, Ari; Porkolab, Miklos

    2008-07-04

    We investigate experimentally the motion and structure of isolated plasma filaments propagating through neutral gas. Plasma filaments, or 'blobs,' arise from turbulent fluctuations in a range of plasmas. Our experimental geometry is toroidally symmetric, and the blobs expand to a larger major radius under the influence of a vertical electric field. The electric field, which is caused by {nabla}B and curvature drifts in a 1/R magnetic field, is limited by collisional damping on the neutral gas. The blob's electrostatic potential structure and the resulting ExB flow field give rise to a vortex pair and a mushroom shape, which are consistent with nonlinear plasma simulations. We observe experimentally this characteristic mushroom shape for the first time. We also find that the blob propagation velocity is inversely proportional to the neutral density and decreases with time as the blob cools.

  15. Online Catalog for Filament-Sigmoid Correlation

    NASA Astrophysics Data System (ADS)

    Merriot, Ivy; Pevtsov, A.; Martens, P.

    2007-05-01

    A new online catalog correlating H-alpha filaments with SXT sigmoids gives researchers, teachers and pre-college students the ability to access digital H-alpha images online that were previously available only at the physical location of the NSO at Sunspot, NM. This web-based catalog correlates SOHO's SXT sigmoids from 1993-1998 as described in a non-online catalog created by Zach Blehm under the direction of Richard Canfield, MSU-Bozeman, with H-alpha filament activity as described by Ivy Merriot under the direction of Alexei Pevtsov, NSO, and Petrus Martens, MSU-Bozeman. The H-alpha images were digitized from film archives of the Flare Patrol Telescope at Sunspot, NM. Use of the online catalog will be demonstrated at the poster site with critical comments encouraged.

  16. Collective dynamics of active filament complexes

    NASA Astrophysics Data System (ADS)

    Nogucci, Hironobu; Ishihara, Shuji

    2016-05-01

    Networks of biofilaments are essential for the formation of cellular structures that support various biological functions. For the most part, previous studies have investigated the collective dynamics of rodlike biofilaments; however, the shapes of the actual subcellular components are often more elaborate. In this study, we considered an active object composed of two active filaments, which represents the progression from rodlike biofilaments to complex-shaped biofilaments. Specifically, we numerically assessed the collective behaviors of these active objects in two dimensions and observed several types of dynamics, depending on the density and the angle of the two filaments as shape parameters of the object. Among the observed collective dynamics, a moving density band that we named a "moving smectic" is introduced here for the first time. By analyzing the trajectories of individual objects and the interactions among them, this study demonstrated how interactions among active biofilaments with complex shapes could produce collective dynamics in a nontrivial manner.

  17. Filament-wound composite vessels material technology

    NASA Technical Reports Server (NTRS)

    Lark, R. F.

    1973-01-01

    Programs are reviewed that were conducted to establish a technology base for applying advanced fibers or resins to high performance filament-wound pressure vessels for containment of cryogens and high pressure gases. Materials evaluated included boron, graphite, PRD 49-1 and 3/epoxy and S-glass/polyimide composites. Closed-end cylindrical, and oblate spheroid-shaped vessels were fabricated in 4- and 8-inch diameter sizes. Vessels were subjected to single-cycle burst, low-cycle fatigue, and sustained loading tests over a -423 F to room temperature range for epoxy composites and a -423 to 500 F temperature range for the polyimide composites. Vessels tested at cryogenic and/or 500 F had thin (3 to 20 mils) metallic liners whereas vessels tested at room temperature had elastomeric liners. Correlations between acoustic emissions and burst and cyclic properties of PRD 49-1 filament-wound vessels are discussed.

  18. Holographic characterization of protein aggregates

    NASA Astrophysics Data System (ADS)

    Wang, Chen; Zhong, Xiao; Ruffner, David; Stutt, Alexandra; Philips, Laura; Ward, Michael; Grier, David

    Holographic characterization directly measures the size distribution of subvisible protein aggregates in suspension and offers insights into their morphology. Based on holographic video microscopy, this analytical technique records and interprets holograms of individual aggregates in protein solutions as they flow down a microfluidic channel, without requiring labeling or other exceptional sample preparation. The hologram of an individual protein aggregate is analyzed in real time with the Lorenz-Mie theory of light scattering to measure that aggregate's size and optical properties. Detecting, counting and characterizing subvisible aggregates proceeds fast enough for time-resolved studies, and lends itself to tracking trends in protein aggregation arising from changing environmental factors. No other analytical technique provides such a wealth of particle-resolved characterization data in situ. Holographic characterization promises accelerated development of therapeutic protein formulations, improved process control during manufacturing, and streamlined quality assurance during storage and at the point of use. Mrsec and MRI program of the NSF, Spheryx Inc.

  19. Kinetic and hydrodynamic models of chemotactic aggregation

    NASA Astrophysics Data System (ADS)

    Chavanis, Pierre-Henri; Sire, Clément

    2007-10-01

    We derive general kinetic and hydrodynamic models of chemotactic aggregation that describe certain features of the morphogenesis of biological colonies (like bacteria, amoebae, endothelial cells or social insects). Starting from a stochastic model defined in terms of N coupled Langevin equations, we derive a nonlinear mean-field Fokker-Planck equation governing the evolution of the distribution function of the system in phase space. By taking the successive moments of this kinetic equation and using a local thermodynamic equilibrium condition, we derive a set of hydrodynamic equations involving a damping term. In the limit of small frictions, we obtain a hyperbolic model describing the formation of network patterns (filaments) and in the limit of strong frictions we obtain a parabolic model which is a generalization of the standard Keller-Segel model describing the formation of clusters (clumps). Our approach connects and generalizes several models introduced in the chemotactic literature. We discuss the analogy between bacterial colonies and self-gravitating systems and between the chemotactic collapse and the gravitational collapse (Jeans instability). We also show that the basic equations of chemotaxis are similar to nonlinear mean-field Fokker-Planck equations so that a notion of effective generalized thermodynamics can be developed.

  20. Cold Milky Way HI Gas in Filaments

    NASA Astrophysics Data System (ADS)

    Kalberla, P. M. W.; Kerp, J.; Haud, U.; Winkel, B.; Ben Bekhti, N.; Flöer, L.; Lenz, D.

    2016-04-01

    We investigate data from the Galactic Effelsberg-Bonn H i Survey, supplemented with data from the third release of the Galactic All Sky Survey (GASS III) observed at Parkes. We explore the all-sky distribution of the local Galactic H i gas with | {v}{{LSR}}| \\lt 25 km s-1 on angular scales of 11‧-16‧. Unsharp masking is applied to extract small-scale features. We find cold filaments that are aligned with polarized dust emission and conclude that the cold neutral medium (CNM) is mostly organized in sheets that are, because of projection effects, observed as filaments. These filaments are associated with dust ridges, aligned with the magnetic field measured on the structures by Planck at 353 GHz. The CNM above latitudes | b| \\gt 20^\\circ is described by a log-normal distribution, with a median Doppler temperature TD = 223 K, derived from observed line widths that include turbulent contributions. The median neutral hydrogen (H i) column density is NH i ≃ 1019.1 cm-2. These CNM structures are embedded within a warm neutral medium with NH i ≃ 1020 cm-2. Assuming an average distance of 100 pc, we derive for the CNM sheets a thickness of ≲0.3 pc. Adopting a magnetic field strength of Btot = (6.0 ± 1.8) μG, proposed by Heiles & Troland, and assuming that the CNM filaments are confined by magnetic pressure, we estimate a thickness of 0.09 pc. Correspondingly, the median volume density is in the range 14 ≲ n ≲ 47 cm-3. The authors thank the Deutsche Forschungsgemeinschaft (DFG) for support under grant numbers KE757/11-1, KE757/7-3, KE757/7-2, KE757/7-1, and BE4823/1-1.

  1. Viscoelastic properties of semiflexible filamentous bacteriophage fd.

    PubMed

    Schmidt, F G; Hinner, B; Sackmann, E; Tang, J X

    2000-10-01

    The cytoskeletal protein filament F-actin has been treated in a number of recent studies as a model physical system for semiflexible filaments. In this work, we studied the viscoelastic properties of entangled solutions of the filamentous bacteriophage fd as an alternative to F-actin with similar physical parameters. We present both microrheometric and macrorheometric measurements of the viscoelastic storage and loss moduli, G'(f ) and G"(f ), respectively, in a frequency range 0.01filament networks. For the dynamic viscosity at the low shear rate limit, a concentration dependence of eta(0) approximately c(2.6) was found. Finally, a linear scaling of the terminal relaxation time with concentration, tau(d) approximately c, was observed. PMID:11089110

  2. Filamentation instability in a quantum magnetized plasma

    SciTech Connect

    Bret, A.

    2008-02-15

    The filamentation instability occurring when a nonrelativistic electron beam passes through a quantum magnetized plasma is investigated by means of a cold quantum magnetohydrodynamic model. It is proved that the instability can be completely suppressed by quantum effects if and only if a finite magnetic field is present. A dimensionless parameter is identified that measures the strength of quantum effects. Strong quantum effects allow for a much smaller magnetic field to suppress the instability than in the classical regime.

  3. Flexible magnetic filaments as micromechanical sensors.

    PubMed

    Goubault, C; Jop, P; Fermigier, M; Baudry, J; Bertrand, E; Bibette, J

    2003-12-31

    We propose a new micromechanical approach to probe bending rigidity at molecular scale. Long flexible filaments made of magnetic colloids and linkers are shown to adopt under magnetic field a hairpin configuration. Measuring the hairpin curvature as a function of the field intensity and the linker length from diffracted light allows us to deduce the linker bending rigidity kappa. The technique is presented for two types of linkers: a spontaneously adsorbing polymer and a grafted biomolecular.

  4. Impact damage in filament wound composite bottles

    NASA Technical Reports Server (NTRS)

    Highsmith, Alton L.

    1993-01-01

    Increasingly, composite materials are being used in advanced structural applications because of the significant weight savings they offer when compared to more traditional engineering materials. The higher cost of composites must be offset by the increased performance that results from reduced structural weight if these new materials are to be used effectively. At present, there is considerable interest in fabricating solid rocket motor cases out of composite materials, and capitalizing on the reduced structural weight to increase rocket performance. However, one of the difficulties that arises when composite materials are used is that composites can develop significant amounts of internal damage during low velocity impacts. Such low velocity impacts may be encountered in routine handling of a structural component like a rocket motor case. The ability to assess the reduction in structural integrity of composite motor cases that experience accidental impacts is essential if composite rocket motor cases are to be certified for manned flight. While experimental studies of the post-impact performance of filament wound composite motor cases haven been proven performed (2,3), scaling impact data from small specimens to full scale structures has proven difficult. If such a scaling methodology is to be achieved, an increased understanding of the damage processes which influence residual strength is required. The study described herein was part of an ongoing investigation of damage development and reduction of tensile strength in filament wound composites subjected to low velocity impacts. The present study, which focused on documenting the damage that develops in filament wound composites as a result of such impacts, included two distinct tasks. The first task was to experimentally assess impact damage in small, filament wound pressure bottles using x-ray radiography. The second task was to study the feasibility of using digital image processing techniques to assist in

  5. Onset of re-epithelialization after skin injury correlates with a reorganization of keratin filaments in wound edge keratinocytes: defining a potential role for keratin 16

    PubMed Central

    1996-01-01

    Injury to stratified epithelia causes a strong induction of keratins 6 (K6) and 16 (K16) in post-mitotic keratinocytes located at the wound edge. We show that induction of K6 and K16 occurs within 6 h after injury to human epidermis. Their subsequent accumulation in keratinocytes correlates with the profound reorganization of keratin filaments from a pan-cytoplasmic distribution to one in which filaments are aggregated in a juxtanuclear location, opposite to the direction of cell migration. This filament reorganization coincides with additional cytoarchitectural changes and the onset of re-epithelialization after 18 h post-injury. By following the assembly of K6 and K16 in vitro and in cultured cells, we find that relative to K5 and K14, a well- characterized keratin pair that is constitutively expressed in epidermis, K6 and K16 polymerize into short 10-nm filaments that accumulate near the nucleus, a property arising from K16. Forced expression of human K16 in skin keratinocytes of transgenic mice causes a retraction of keratin filaments from the cell periphery, often in a polarized fashion. These results imply that K16 may not have a primary structural function akin to epidermal keratins. Rather, they suggest that in the context of epidermal wound healing, the function of K16 could be to promote a reorganization of the cytoplasmic array of keratin filaments, an event that precedes the onset of keratinocyte migration into the wound site. PMID:8636216

  6. Origin and Evolution of Filament-Prominence Systems

    NASA Astrophysics Data System (ADS)

    Martens, Petrus C.; Zwaan, Cornelis

    2001-09-01

    We present a ``head-to-tail'' linkage model for the formation, evolution, and eruption of solar filaments. The magnetic field structure of our model is based on the observation that filaments form exclusively in filament channels with no apparent magnetic connections above the polarity inversion line. The formation of a filament in this configuration is driven by flux convergence and cancellation, which produces looplike filament segments with a half-turn. Filament segments of like chirality may connect and form long quiescent filaments. Such filaments are stabilized through footpoint anchoring until further cancellation at the footpoints causes their eruption. The eruption restores the original filament channel so that filament formation may resume immediately. We then demonstrate that the combined workings of Hale's polarity law, Joy's law, and differential rotation introduce a strong hemispheric preference in the chirality of filaments formed poleward of the sunspot belt, which is in agreement with observations. We analyze the magnetic fine structure of filaments formed through our model and find consistency with the observed hemispheric preference for barb orientation and a simple explanation for barb formation. Finally, we consider the flux tubes retracted below the surface in the process of filament formation. We show that every cancellation event that generates a filament obeying the hemispheric chirality preference injects a flux tube below the surface with a poloidal field opposite that of the ongoing cycle. We suggest that this pattern of submergence of flux represents the specific mechanism for the reversal of the poloidal flux in a Babcock-Leighton-Durney-type model for the solar dynamo.

  7. Hot filament CVD of boron nitride films

    DOEpatents

    Rye, Robert R.

    1992-01-01

    Using a hot filament (.apprxeq.1400.degree. C.) to activate borazine (B.sub.3 N.sub.3 H.sub.6) molecules for subsequent reaction with a direct line-of-sight substrate, transparent boron ntiride films as thick as 25,000 angstroms are grown for a substrate temperature as low as 100.degree. C. The minimum temperature is determined by radiative heating from the adjacent hot filament. The low temperature BN films show no indication of crystallinity with X-ray diffraction (XRD). X-ray photoelectron spectra (XPS) show the films to have a B:N ratio of 0.97:1 with no other XPS detectable impurities above the 0.5% level. Both Raman and infrared (IR) spectroscopy are characteristic of h-BN with small amounts of hydrogen detected as N-H and B-H bands in the IR spectrum. An important feature of this method is the separation and localization of the thermal activation step at the hot filament from the surface reaction and film growth steps at the substrate surface. This allows both higher temperature thermal activation and lower temperature film growth.

  8. Mechanical Properties of Intermediate Filament Proteins.

    PubMed

    Charrier, Elisabeth E; Janmey, Paul A

    2016-01-01

    Purified intermediate filament (IF) proteins can be reassembled in vitro to produce polymers closely resembling those found in cells, and these filaments form viscoelastic gels. The cross-links holding IFs together in the network include specific bonds between polypeptides extending from the filament surface and ionic interactions mediated by divalent cations. IF networks exhibit striking nonlinear elasticity with stiffness, as quantified by shear modulus, increasing an order of magnitude as the networks are deformed to large strains resembling those that soft tissues undergo in vivo. Individual IFs can be stretched to more than two or three times their resting length without breaking. At least 10 different rheometric methods have been used to quantify the viscoelasticity of IF networks over a wide range of timescales and strain magnitudes. The mechanical roles of different classes of cytoplasmic IFs on mesenchymal and epithelial cells in culture have also been studied by an even wider range of microrheological methods. These studies have documented the effects on cell mechanics when IFs are genetically or pharmacologically disrupted or when normal or mutant IF proteins are exogenously expressed in cells. Consistent with in vitro rheology, the mechanical role of IFs is more apparent as cells are subjected to larger and more frequent deformations.

  9. Mechanical properties of intermediate filament proteins

    PubMed Central

    Charrier, Elisabeth E.; Janmey, Paul A.

    2016-01-01

    Purified intermediate filament proteins can be reassembled in vitro to produce polymers closely resembling those found in cells, and these filament form viscoelastic gels. The crosslinks holding IFs together in the network include specific bonds between polypeptides extending from the filament surface and ionic interactions mediated by divalent cations. IF networks exhibit striking non-linear elasticity with stiffness, as quantified by shear modulus, increasing an order of magnitude as the networks are deformed to large stains resembling those that soft tissues undergo in vivo. Individual Ifs can be stretched to more than 2 or 3 times their resting length without breaking. At least ten different rheometric methods have been used to quantify the viscoelasticity of IF networks over a wide range of timescales and strain magnitudes. The mechanical roles of different classes of IF on mesenchymal and epithelial cells in culture have also been studied by an even wider range of microrheological methods. These studies have documented the effects on cell mechanics when IFs are genetically or pharmacologically disrupted or when normal or mutant IF proteins are exogenously expressed in cells. Consistent with in vitro rheology, the mechanical role of IFs is more apparent as cells are subjected to larger and more frequent deformations. PMID:26795466

  10. Nanomechanical properties of desmin intermediate filaments.

    PubMed

    Kiss, B; Karsai, A; Kellermayer, M S Z

    2006-08-01

    Desmin intermediate filaments play important role in the mechanical integrity and elasticity of muscle cells. The mechanisms of how desmin contributes to cellular mechanics are little understood. Here, we explored the nanomechanics of desmin by manipulating individual filaments with atomic force microscopy. In complex, hierarchical force responses we identified recurring features which likely correspond to distinct properties and structural transitions related to desmin's extensibility and elasticity. The most frequently observed feature is an initial unbinding transition that corresponds to the removal of approximately 45-nm-long coiled-coil dimers from the filament surface with 20-60 pN forces in usually two discrete steps. In tethers longer than 60 nm we most often observed force plateaus studded with bumps spaced approximately 16 nm apart, which are likely caused by a combination of protofilament unzipping, dimer-dimer sliding and coiled-coil-domain unfolding events. At high stresses and strains non-linear, entropic elasticity was dominant, and sometimes repetitive sawtooth force transitions were seen which might arise because of slippage within the desmin protofilament. A model is proposed in which mechanical yielding is caused by coiled-coil domain unfolding and dimer-dimer sliding/slippage, and strain hardening by the entropic elasticity of partially unfolded protofilaments. PMID:16714122

  11. Contraction dynamics of planar liquid filaments

    NASA Astrophysics Data System (ADS)

    Devlin, Nicole; Sambath, Krishnaraj; Harris, Michael; Basaran, Osman

    2012-11-01

    Thin liquid sheets are ubiquitous in nature and urban landscapes, e.g. waterfalls, and industry, e.g. in various atomizers where sheets of liquid emanate from a nozzle or off a solid surface. These liquid sheets contract due to surface tension and may or may not break into smaller fragments depending on physical properties and flow conditions. The cross-section of a liquid sheet in a plane perpendicular to the main flow direction is a planar or 2D filament. Here, we study the contraction dynamics of an idealized 2D filament of an incompressible Newtonian fluid the initial shape of which is a rectangle terminated by two identical semi-circles. The dynamics are analyzed by solving the full 2D Navier-Stokes system and a1D, slender-jet approximation to it by a numerical technique based on the Galerkin finite element method. Simulation results are summarized by means of a phase diagram in the space of Reynolds number and initial filament aspect ratio. The talk will conclude with a discussion of the different modes of contraction and a critique of the capabilities and limitations of the 1D model.

  12. 10-nm filaments are induced to collapse in living cells microinjected with monoclonal and polyclonal antibodies against tubulin

    PubMed Central

    1984-01-01

    Cells were microinjected with four mouse monoclonal antibodies that were directed against either alpha- or beta-tubulin subunits, one monoclonal with activity against both subunits, and a guinea pig polyclonal antibody with activity directed against both subunits, to determine the effects on the distribution of cytoplasmic microtubules and 10-nm filaments. The specificities of the antibodies were confirmed by Western blots, solid phase radioimmunoassay, and Western blot analysis of alpha- and beta-tubulin peptide maps. Two monoclonals DM1A and DM3B3, an anti-alpha- and anti-beta-tubulin respectively, and the guinea pig polyclonal anti-alpha/beta-tubulin antibody (GP1T4) caused the 10-nm filaments to collapse into large lateral aggregates collecting in the cell periphery or tight juxtanuclear caps; the other monoclonal antibodies had no effect when microinjected into cells. The filament collapsing was observed to be complete at 1.5-2 h after injection. During the first 30 min after injection a few cytoplasmic microtubules near the cell periphery could be observed by fluorescence microscopy. This observation was confirmed by electron microscopy, which also demonstrated assembled microtubules in the juxtanuclear region. By 1.5 h, when most of the 10-nm filaments were collapsed, the complete cytoplasmic array of microtubules was observed. Cells injected in prophase were able to assemble a mitotic spindle, suggesting that the antibody did not block microtubule assembly. Metabolic labeling with [35S]methionine of microinjected cells revealed that total protein synthesis was the same as that observed in uninjected cells. This indicated that the microinjected antibody apparently did not produce deleterious effects on cellular metabolism. These results suggest that through a direct interaction of antibodies with either alpha- or beta- tubulin subunits, 10-nm filaments were dissociated from their normal distribution. It is possible that the antibodies disrupted postulated 10

  13. Genetic deletion of ABP-120 alters the three-dimensional organization of actin filaments in Dictyostelium pseudopods

    PubMed Central

    1995-01-01

    This study extends the observations on the defects in pseudopod formation of ABP-120+ and ABP-120- cells by a detailed morphological and biochemical analysis of the actin based cytoskeleton. Both ABP-120+ and ABP-120- cells polymerize the same amount of F-actin in response to stimulation with cAMP. However, unlike ABP-120+ cells, ABP-120- cells do not incorporate actin into the Triton X-100-insoluble cytoskeleton at 30-50 s, the time when ABP-120 is incorporated into the cytoskeleton and when pseudopods are extended after cAMP stimulation in wild-type cells. By confocal and electron microscopy, pseudopods extended by ABP- 120- cells are not as large or thick as those produced by ABP-120+ cells and in the electron microscope, an altered filament network is found in pseudopods of ABP-120- cells when compared to pseudopods of ABP-120+ cells. The actin filaments found in areas of pseudopods in ABP- 120+ cells either before or after stimulation were long, straight, and arranged into space filling orthogonal networks. Protrusions of ABP-120- cells are less three-dimensional, denser, and filled with multiple foci of aggregated filaments consistent with collapse of the filament network due to the absence of ABP-120-mediated cross-linking activity. The different organization of actin filaments may account for the diminished size of protrusions observed in living and fixed ABP-120- cells compared to ABP-120+ cells and is consistent with the role of ABP- 120 in regulating pseudopod extension through its cross-linking of actin filaments. PMID:7876307

  14. The formation of straight and twisted filaments from short tau peptides.

    PubMed

    Goux, Warren J; Kopplin, Lauren; Nguyen, Anh D; Leak, Kathryn; Rutkofsky, Marni; Shanmuganandam, Vasanthi D; Sharma, Deepak; Inouye, Hideyo; Kirschner, Daniel A

    2004-06-25

    We studied fibril formation in a family of peptides based on PHF6 (VQIVYK), a short peptide segment found in the microtubule binding region of tau protein. N-Acetylated peptides AcVYK-amide (AcVYK), AcIVYK-amide (AcPHF4), AcQIVYK-amide (AcPHF5), and AcV-QIVYK-amide (AcPHF6) rapidly formed straight filaments in the presence of 0.15 m NaCl, each composed of two laterally aligned protofilaments approximately 5 nm in width. X-ray fiber diffraction showed the omnipresent sharp 4.7-A reflection indicating that the scattering objects are likely elongated along the hydrogen-bonding direction in a cross-beta conformation, and Fourier transform IR suggested the peptide chains were in a parallel (AcVYK, AcPHF6) or antiparallel (AcPHF4, AcPHF5) beta-sheet configuration. The dipeptide N-acetyl-YK-amide (AcYK) formed globular structures approximately 200 nm to 1 microm in diameter. The polymerization rate, as measured by thioflavin S binding, increased with the length of the peptide going from AcYK --> AcPHF6, and peptides that aggregated most rapidly displayed CD spectra consistent with beta-sheet structure. There was a 3-fold decrease in rate when Val was substituted for Ile or Gln, nearly a 10-fold decrease when Ala was substituted for Tyr, and an increase in polymerization rate when Glu was substituted for Lys. Twisted filaments, composed of four laterally aligned protofilaments (9-19 nm width, approximately 90 nm half-periodicity), were formed by mixing AcPHF6 with AcVYK. Taken together these results suggest that the core of PHF6 is localized at VYK, and the interaction between small amphiphilic segments of tau may initiate nucleation and lead to filaments displaying paired helical filament morphology.

  15. Filamentous structures in skeletal muscle: anchors for the subsarcolemmal space.

    PubMed

    Khairani, Astrid Feinisa; Tajika, Yuki; Takahashi, Maiko; Ueno, Hitoshi; Murakami, Tohru; Soenggono, Arifin; Yorifuji, Hiroshi

    2015-03-01

    In skeletal muscle fibers, intermediate filaments and actin filaments provide structural support to the myofibrils and the sarcolemma. For many years, it was poorly understood from ultrastructural observations that how these filamentous structures were kept anchored. The present study was conducted to determine the architecture of filamentous anchoring structures in the subsarcolemmal space and the intermyofibrils. The diaphragms (Dp) of adult wild type and mdx mice (mdx is a model for Duchenne muscular dystrophy) were subjected to tension applied perpendicular to the long axis of the muscle fibers, with or without treatment with 1% Triton X-100 or 0.03% saponin. These experiments were conducted to confirm the presence and integrity of the filamentous anchoring structures. Transmission electron microscopy revealed that these structures provide firm transverse connections between the sarcolemma and peripheral myofibrils. Most of the filamentous structures appeared to be inserted into subsarcolemmal densities, forming anchoring connections between the sarcolemma and peripheral myofibrils. In some cases, actin filaments were found to run longitudinally in the subsarcolemmal space to connect to the sarcolemma or in some cases to connect to the intermyofibrils as elongated thin filaments. These filamentous anchoring structures were less common in the mdx Dp. Our data suggest that the transverse and longitudinal filamentous structures form an anchoring system in the subsarcolemmal space and the intermyofibrils.

  16. Tropomyosin - master regulator of actin filament function in the cytoskeleton.

    PubMed

    Gunning, Peter W; Hardeman, Edna C; Lappalainen, Pekka; Mulvihill, Daniel P

    2015-08-15

    Tropomyosin (Tpm) isoforms are the master regulators of the functions of individual actin filaments in fungi and metazoans. Tpms are coiled-coil parallel dimers that form a head-to-tail polymer along the length of actin filaments. Yeast only has two Tpm isoforms, whereas mammals have over 40. Each cytoskeletal actin filament contains a homopolymer of Tpm homodimers, resulting in a filament of uniform Tpm composition along its length. Evidence for this 'master regulator' role is based on four core sets of observation. First, spatially and functionally distinct actin filaments contain different Tpm isoforms, and recent data suggest that members of the formin family of actin filament nucleators can specify which Tpm isoform is added to the growing actin filament. Second, Tpms regulate whole-organism physiology in terms of morphogenesis, cell proliferation, vesicle trafficking, biomechanics, glucose metabolism and organ size in an isoform-specific manner. Third, Tpms achieve these functional outputs by regulating the interaction of actin filaments with myosin motors and actin-binding proteins in an isoform-specific manner. Last, the assembly of complex structures, such as stress fibers and podosomes involves the collaboration of multiple types of actin filament specified by their Tpm composition. This allows the cell to specify actin filament function in time and space by simply specifying their Tpm isoform composition.

  17. Tropomyosin - master regulator of actin filament function in the cytoskeleton.

    PubMed

    Gunning, Peter W; Hardeman, Edna C; Lappalainen, Pekka; Mulvihill, Daniel P

    2015-08-15

    Tropomyosin (Tpm) isoforms are the master regulators of the functions of individual actin filaments in fungi and metazoans. Tpms are coiled-coil parallel dimers that form a head-to-tail polymer along the length of actin filaments. Yeast only has two Tpm isoforms, whereas mammals have over 40. Each cytoskeletal actin filament contains a homopolymer of Tpm homodimers, resulting in a filament of uniform Tpm composition along its length. Evidence for this 'master regulator' role is based on four core sets of observation. First, spatially and functionally distinct actin filaments contain different Tpm isoforms, and recent data suggest that members of the formin family of actin filament nucleators can specify which Tpm isoform is added to the growing actin filament. Second, Tpms regulate whole-organism physiology in terms of morphogenesis, cell proliferation, vesicle trafficking, biomechanics, glucose metabolism and organ size in an isoform-specific manner. Third, Tpms achieve these functional outputs by regulating the interaction of actin filaments with myosin motors and actin-binding proteins in an isoform-specific manner. Last, the assembly of complex structures, such as stress fibers and podosomes involves the collaboration of multiple types of actin filament specified by their Tpm composition. This allows the cell to specify actin filament function in time and space by simply specifying their Tpm isoform composition. PMID:26240174

  18. Microwave processing of ceramic oxide filaments. Annual report, FY1997

    SciTech Connect

    Vogt, G.J.

    1998-12-31

    The objective of the microwave filament processing project is to develop microwave techniques to manufacture continuous ceramic oxide filaments. Microwave processing uses the volumetric absorption of microwave power in oxide filament tows to drive off process solvents, to burn out organic binders, and to sinter the dried fibers to produce flexible, high-strength ceramic filaments. The technical goal is to advance filament processing technology by microwave heating more rapidly with less energy and at a lower cost than conventional processing, but with the same quality as conventional processing. The manufacturing goal is to collaborate with the 3M Company, a US manufacturer of ceramic oxide filaments, to evaluate the technology using a prototype filament system and to transfer the microwave technology to the 3M Company. Continuous ceramic filaments are a principal component in many advanced high temperature materials like continuous fiber ceramic composites (CFCC) and woven ceramic textiles. The use of continuous ceramic filaments in CFCC radiant burners, gas turbines, waste incineration, and hot gas filters in U.S. industry and power generation is estimated to save at least 2.16 quad/yr by year 2010 with energy cost savings of at least $8.1 billion. By year 2010, continuous ceramic filaments and CFCC`s have the potential to abate pollution emissions by 917,000 tons annually of nitrous oxide and 118 million tons annually of carbon dioxide (DOE Report OR-2002, February, 1994).

  19. Microtubule-dependent transport and dynamics of vimentin intermediate filaments.

    PubMed

    Hookway, Caroline; Ding, Liya; Davidson, Michael W; Rappoport, Joshua Z; Danuser, Gaudenz; Gelfand, Vladimir I

    2015-05-01

    We studied two aspects of vimentin intermediate filament dynamics-transport of filaments and subunit exchange. We observed transport of long filaments in the periphery of cells using live-cell structured illumination microscopy. We studied filament transport elsewhere in cells using a photoconvertible-vimentin probe and total internal reflection microscopy. We found that filaments were rapidly transported along linear tracks in both anterograde and retrograde directions. Filament transport was microtubule dependent but independent of microtubule polymerization and/or an interaction with the plus end-binding protein APC. We also studied subunit exchange in filaments by long-term imaging after photoconversion. We found that converted vimentin remained in small clusters along the length of filaments rather than redistributing uniformly throughout the network, even in cells that divided after photoconversion. These data show that vimentin filaments do not depolymerize into individual subunits; they recompose by severing and reannealing. Together these results show that vimentin filaments are very dynamic and that their transport is required for network maintenance.

  20. Disruption of the keratin filament network during epithelial cell division.

    PubMed Central

    Lane, E B; Goodman, S L; Trejdosiewicz, L K

    1982-01-01

    The behaviour of keratin filaments during cell division was examined in a wide range of epithelial lines from several species. Almost half of them show keratin disruption as described previously: by immunofluorescence, filaments are replaced during mitosis by a 'speckled' pattern of discrete cytoplasmic dots. In the electron microscope these ' speckles ' are seen as granules around the cell periphery, just below the actin cortical mesh, with no detectable 10 nm filament structure inside them and no keratin filament bundles in the rest of the cytoplasm. A time course of the filament reorganization was constructed from double immunofluorescence data; filaments are disrupted in prophase, and the filament network is intact again by cytokinesis. The phenomenon is restricted to cells rich in keratin filaments, such as keratinocytes; it is unrelated to the co-existence of vimentin in many of these cells, and vimentin is generally maintained as filaments while the keratin is restructured. Some resistance to the effect may be conferred by an extended cycle time. Filament reorganization takes place within minutes, so that a reversible mechanism seems more likely than one involving de novo protein synthesis, at this metabolically quiet stage of the cell cycle. Images Fig. 1. Fig. 2. Fig. 3. Fig. 4. Fig. 5. Fig. 6. PMID:6202508

  1. The Cape Ghir filament system in August 2009 (NW Africa)

    NASA Astrophysics Data System (ADS)

    Sangrà, Pablo; Troupin, Charles; Barreiro-González, Beatriz; Desmond Barton, Eric; Orbi, Abdellatif; Arístegui, Javier

    2015-06-01

    In the framework of the Canaries-Iberian marine ecosystem Exchanges (CAIBEX) experiment, an interdisciplinary high-resolution survey was conducted in the NW African region of Cape Ghir (30°38'N) during August 2009. The anatomy of a major filament is investigated on scales down to the submesoscale using in situ and remotely sensed data. The filament may be viewed as a system composed of three intimately connected structures: a small, shallow, and cold filament embedded within a larger, deeper, and cool filament and an intrathermocline anticyclonic eddy (ITE). The cold filament, which stretches 110 km offshore, is a shallow feature 60 m deep and 25 km wide, identified by minimal surface temperatures and rich in chlorophyll a. This structure comprises two asymmetrical submesoscale (˜18 km) fronts with jets flowing in opposite directions. The cold filament is embedded near the equatorward boundary of a much broader region of approximately 120 km width and 150 m depth that forms the cool filament and stretches at least 200 km offshore. This cool region, partly resulting from the influence of cold filament, is limited by two asymmetrical mesoscale (˜50 km) frontal boundaries. At the ITE, located north of the cold filament, we observe evidence of downwelling as indicated by a relatively high concentration of particles extending from the surface to more than 200 m depth. We hypothesize that this ITE may act as a sink of carbon and thus the filament system may serve dual roles of offshore carbon export and carbon sink.

  2. Microtubule-dependent transport and dynamics of vimentin intermediate filaments

    PubMed Central

    Hookway, Caroline; Ding, Liya; Davidson, Michael W.; Rappoport, Joshua Z.; Danuser, Gaudenz; Gelfand, Vladimir I.

    2015-01-01

    We studied two aspects of vimentin intermediate filament dynamics—transport of filaments and subunit exchange. We observed transport of long filaments in the periphery of cells using live-cell structured illumination microscopy. We studied filament transport elsewhere in cells using a photoconvertible-vimentin probe and total internal reflection microscopy. We found that filaments were rapidly transported along linear tracks in both anterograde and retrograde directions. Filament transport was microtubule dependent but independent of microtubule polymerization and/or an interaction with the plus end–binding protein APC. We also studied subunit exchange in filaments by long-term imaging after photoconversion. We found that converted vimentin remained in small clusters along the length of filaments rather than redistributing uniformly throughout the network, even in cells that divided after photoconversion. These data show that vimentin filaments do not depolymerize into individual subunits; they recompose by severing and reannealing. Together these results show that vimentin filaments are very dynamic and that their transport is required for network maintenance. PMID:25717187

  3. Geometry of flexible filament cohesion: better contact through twist?

    PubMed

    Cajamarca, Luis; Grason, Gregory M

    2014-11-01

    Cohesive interactions between filamentous molecules have broad implications for a range of biological and synthetic materials. While long-standing theoretical approaches have addressed the problem of inter-filament forces from the limit of infinitely rigid rods, the ability of flexible filaments to deform intra-filament shape in response to changes in inter-filament geometry has a profound affect on the nature of cohesive interactions. In this paper, we study two theoretical models of inter-filament cohesion in the opposite limit, in which filaments are sufficiently flexible to maintain cohesive contact along their contours, and address, in particular, the role played by helical-interfilament geometry in defining interactions. Specifically, we study models of featureless, tubular filaments interacting via: (1) pair-wise Lennard-Jones (LJ) interactions between surface elements and (2) depletion-induced filament binding stabilized by electrostatic surface repulsion. Analysis of these models reveals a universal preference for cohesive filament interactions for non-zero helical skew, and further, that in the asymptotic limit of vanishing interaction range relative to filament diameter, the skew-dependence of cohesion approaches a geometrically defined limit described purely by the close-packing geometry of twisted tubular filaments. We further analyze non-universal features of the skew-dependence of cohesion at small-twist for both potentials, and argue that in the LJ model the pair-wise surface attraction generically destabilizes parallel filaments, while in the second model, pair-wise electrostatic repulsion in combination with non-pairwise additivity of depletion leads to a meta-stable parallel state.

  4. Ecological and Morphological Profile of Floating Spherical Cladophora socialis Aggregations in Central Thailand

    PubMed Central

    Tsutsui, Isao; Miyoshi, Tatsuo; Sukchai, Halethichanok; Pinphoo, Piyarat; Aue-umneoy, Dusit; Meeanan, Chonlada; Songphatkaew, Jaruwan; Klomkling, Sirimas; Yamaguchi, Iori; Ganmanee, Monthon; Sudo, Hiroyuki; Hamano, Kaoru

    2015-01-01

    The unique beauty of spherical aggregation forming algae has attracted much attention from both the scientific and lay communities. Several aegagropilous seaweeds have been identified to date, including the plants of genus Cladophora and Chaetomorpha. However, this phenomenon remains poorly understood. In July 2013, a mass occurrence of spherical Cladophora aggregations was observed in a salt field reservoir in Central Thailand. The aims of the present study were to describe the habitat of the spherical aggregations and confirm the species. We performed a field survey, internal and external morphological observations, pyrenoid ultrastructure observations, and molecular sequence analysis. Floating spherical Cladophora aggregations (1–8 cm in diameter) were observed in an area ~560 m2, on the downwind side of the reservoir where there was water movement. Individual filaments in the aggregations were entangled in each other; consequently, branches growing in different directions were observed within a clump. We suggest that water movement and morphological characteristics promote the formation of spherical aggregations in this species. The molecular sequencing results revealed that the study species was highly homologous to both C. socialis and C. coelothrix. However, the diameter of the apical cells in the study species was less than that of C. coelothrix. The pyrenoid ultrastructure was more consistent with that of C. socialis. We conclude that the study species is C. socialis. This first record of spherical aggregations in this species advances our understanding of these formations. However, further detailed physical measurements are required to fully elucidate the mechanism behind these spherical formations. PMID:25898393

  5. Dynamics of solar filaments. IV - Structure and mass flow of an active region filament

    NASA Technical Reports Server (NTRS)

    Schmieder, B.; Malherbe, J. M.; Simon, G.; Poland, A. I.

    1985-01-01

    An active region filament near the center of the solar disk was observed on September 29-30, 1980, with the Multichannel Subtractive Double Pass Spectrograph of the Meudon solar tower and the UV Spectrograph and Polarimeter aboard the SMM satellite. H-alpha and C IV measurements are presently used to study brightness and material velocity in the 10,000 and 100,000 K temperature ranges, and photospheric magnetograms are used to investigate the underlying magnetic field. Attention is given to the constraints imposed on possible filament structures by observations, as well as the expected MHD relationships.

  6. Peptide aggregation in neurodegenerative disease.

    PubMed

    Murphy, Regina M

    2002-01-01

    In the not-so-distant past, insoluble aggregated protein was considered as uninteresting and bothersome as yesterday's trash. More recently, protein aggregates have enjoyed considerable scientific interest, as it has become clear that these aggregates play key roles in many diseases. In this review, we focus attention on three polypeptides: beta-amyloid, prion, and huntingtin, which are linked to three feared neurodegenerative diseases: Alzheimer's, "mad cow," and Huntington's disease, respectively. These proteins lack any significant primary sequence homology, yet their aggregates possess very similar features, specifically, high beta-sheet content, fibrillar morphology, relative insolubility, and protease resistance. Because the aggregates are noncrystalline, secrets of their structure at nanometer resolution are only slowly yielding to X-ray diffraction, solid-state NMR, and other techniques. Besides structure, the aggregates may possess similar pathways of assembly. Two alternative assembly pathways have been proposed: the nucleation-elongation and the template-assisted mode. These two modes may be complementary, not mutually exclusive. Strategies for interfering with aggregation, which may provide novel therapeutic approaches, are under development. The structural similarities between protein aggregates of dissimilar origin suggest that therapeutic strategies successful against one disease may have broad utility in others. PMID:12117755

  7. Topics in Probabilistic Judgment Aggregation

    ERIC Educational Resources Information Center

    Wang, Guanchun

    2011-01-01

    This dissertation is a compilation of several studies that are united by their relevance to probabilistic judgment aggregation. In the face of complex and uncertain events, panels of judges are frequently consulted to provide probabilistic forecasts, and aggregation of such estimates in groups often yield better results than could have been made…

  8. Mineral of the month: aggregates

    USGS Publications Warehouse

    Tepordei, Valentin V.

    2005-01-01

    Natural aggregates, consisting of crushed stone, and sand and gravel, are a major contributor to economic health, and have an amazing variety of uses. Aggregates are among the most abundant mineral resources and are major basic raw materials used by construction, agriculture and other industries that employ complex chemical and metallurgical processes.

  9. Validity of using average diameter for determination of tensile strength and Weibull modulus of ceramic filaments

    SciTech Connect

    Petry, M.D.; Mah, T.I.; Kerans, R.J.

    1997-10-01

    Strengths and Weibull moduli for alumina/yttrium aluminum garnet eutectic (AYE) filaments and for Si-C-O (Nicalon) filaments were calculated using measured and average filament diameters. The strengths agreed closely. Thus an average filament diameter could be used instead of the measured filament diameter in calculating strengths. The Weibull modulus obtained from an average filament diameter approximates the Weibull modulus obtained using the measured filament diameter.

  10. Molecular aggregation of humic substances

    USGS Publications Warehouse

    Wershaw, R. L.

    1999-01-01

    Humic substances (HS) form molecular aggregates in solution and on mineral surfaces. Elucidation of the mechanism of formation of these aggregates is important for an understanding of the interactions of HS in soils arid natural waters. The HS are formed mainly by enzymatic depolymerization and oxidation of plant biopolymers. These reactions transform the aromatic and lipid plant components into amphiphilic molecules, that is, molecules that consist of separate hydrophobic (nonpolar) and hydrophilic (polar) parts. The nonpolar parts of the molecules are composed of relatively unaltered segments of plant polymers and the polar parts of carboxylic acid groups. These amphiphiles form membrane-like aggregates on mineral surfaces and micelle-like aggregates in solution. The exterior surfaces of these aggregates are hydrophilic, and the interiors constitute separate hydrophobic liquid-like phases.

  11. Nanoparticle aggregation: principles and modeling.

    PubMed

    Zhang, Wen

    2014-01-01

    The high surface area to volume ratio of nanoparticles usually results in highly reactive and colloidal instability compared to their bulk counterparts. Aggregation as well as many other transformations (e.g., dissolution) in the environment may alter the physiochemical properties, reactivity, fate, transport, and biological interactions (e.g., bioavailability and uptake) of nanoparticles. The unique properties pertinent to nanoparticles, such as shape, size, surface characteristics, composition, and electronic structures, greatly challenge the ability of colloid science to understand nanoparticle aggregation and its environmental impacts. This review briefly introduces fundamentals about aggregation, fractal dimensions, classic and extended Derjaguin-Landau-Verwey-Overbeak (DLVO) theories, aggregation kinetic modeling, experimental measurements, followed by detailed discussions on the major factors on aggregation and subsequent effects on nanomaterial transport and reactivity.

  12. Immunogenicity of Therapeutic Protein Aggregates.

    PubMed

    Moussa, Ehab M; Panchal, Jainik P; Moorthy, Balakrishnan S; Blum, Janice S; Joubert, Marisa K; Narhi, Linda O; Topp, Elizabeth M

    2016-02-01

    Therapeutic proteins have a propensity for aggregation during manufacturing, shipping, and storage. The presence of aggregates in protein drug products can induce adverse immune responses in patients that may affect safety and efficacy, and so it is of concern to both manufacturers and regulatory agencies. In this vein, there is a lack of understanding of the physicochemical determinants of immunological responses and a lack of standardized analytical methods to survey the molecular properties of aggregates associated with immune activation. In this review, we provide an overview of the basic immune mechanisms in the context of interactions with protein aggregates. We then critically examine the literature with emphasis on the underlying immune mechanisms as they relate to aggregate properties. Finally, we highlight the gaps in our current understanding of this issue and offer recommendations for future research. PMID:26869409

  13. Mechanics of fire ant aggregations

    NASA Astrophysics Data System (ADS)

    Tennenbaum, Michael; Liu, Zhongyang; Hu, David; Fernandez-Nieves, Alberto

    2016-01-01

    Fire ants link their bodies to form aggregations; these can adopt a variety of structures, they can drip and spread, or withstand applied loads. Here, by using oscillatory rheology, we show that fire ant aggregations are viscoelastic. We find that, at the lowest ant densities probed and in the linear regime, the elastic and viscous moduli are essentially identical over the spanned frequency range, which highlights the absence of a dominant mode of structural relaxation. As ant density increases, the elastic modulus rises, which we interpret by alluding to ant crowding and subsequent jamming. When deformed beyond the linear regime, the aggregation flows, exhibiting shear-thinning behaviour with a stress load that is comparable to the maximum load the aggregation can withstand before individual ants are torn apart. Our findings illustrate the rich, collective mechanical behaviour that can arise in aggregations of active, interacting building blocks.

  14. Mechanics of fire ant aggregations.

    PubMed

    Tennenbaum, Michael; Liu, Zhongyang; Hu, David; Fernandez-Nieves, Alberto

    2016-01-01

    Fire ants link their bodies to form aggregations; these can adopt a variety of structures, they can drip and spread, or withstand applied loads. Here, by using oscillatory rheology, we show that fire ant aggregations are viscoelastic. We find that, at the lowest ant densities probed and in the linear regime, the elastic and viscous moduli are essentially identical over the spanned frequency range, which highlights the absence of a dominant mode of structural relaxation. As ant density increases, the elastic modulus rises, which we interpret by alluding to ant crowding and subsequent jamming. When deformed beyond the linear regime, the aggregation flows, exhibiting shear-thinning behaviour with a stress load that is comparable to the maximum load the aggregation can withstand before individual ants are torn apart. Our findings illustrate the rich, collective mechanical behaviour that can arise in aggregations of active, interacting building blocks. PMID:26501413

  15. Adsorption-induced colloidal aggregation

    NASA Astrophysics Data System (ADS)

    Law, B. M.; Petit, J.-M.; Beysens, D.

    1998-03-01

    Reversible colloidal aggregation in binary liquid mixtures has been studied for a number of years. As the phase separation temperature of the liquid mixture is approached the thickness of an adsorption layer around the colloidal particles increases. Beysens and coworkers have demonstrated experimentally that this adsorption layer is intimately connected with the aggregation of the colloidal particles, however, no definitive theory has been available which can explain all of the experimental observations. In this contribution we describe an extension of the Derjaguin, Landau, Verwey, and Overbeek theory of colloidal aggregation which takes into account the presence of the adsorption layer and which more realistically models the attractive dispersion interactions. This modified theory can quantitatively account for many of the observed experimental features such as the characteristics of the aggregated state, the general shape of the aggregation line, and the temperature dependence of the second virial coefficient for a lutidine-water mixture containing a small volume fraction of silica colloidal particles.

  16. Microwave guiding in air along single femtosecond laser filament

    SciTech Connect

    Ren Yu; Alshershby, Mostafa; Qin Jiang; Hao Zuoqiang; Lin Jingquan

    2013-03-07

    Microwave guiding along single plasma filament generated through the propagation of femtosecond (fs) laser pulses in air has been demonstrated over a distance of about 6.5 cm, corresponding to a microwave signal intensity enhancement of more than 3-fold over free space propagation. The current propagation distance along the fs laser filament is in agreement with the calculations and limited by the relatively high resistance of the single plasma filament. Using a single fs laser filament to channel microwave radiation considerably alleviate requirements to the power of fs laser pulses compared to the case of the circular filaments waveguide. In addition, it can be used as a simple and non-intrusive method to obtain the basic parameters of laser-generated plasma filament.

  17. A filament supported by different magnetic field configurations

    NASA Astrophysics Data System (ADS)

    Guo, Y.; Schmieder, B.; Démoulin, P.; Wiegelmann, T.; Aulanier, G.; Török, T.; Bommier, V.

    2011-08-01

    A nonlinear force-free magnetic field extrapolation of vector magnetogram data obtained by THEMIS/MTR on 2005 May 27 suggests the simultaneous existence of different magnetic configurations within one active region filament: one part of the filament is supported by field line dips within a flux rope, while the other part is located in dips within an arcade structure. Although the axial field chirality (dextral) and the magnetic helicity (negative) are the same along the whole filament, the chiralities of the filament barbs at different sections are opposite, i.e., right-bearing in the flux rope part and left-bearing in the arcade part. This argues against past suggestions that different barb chiralities imply different signs of helicity of the underlying magnetic field. This new finding about the chirality of filaments will be useful to associate eruptive filaments and magnetic cloud using the helicity parameter in the Space Weather Science.

  18. A FILAMENT ERUPTION ON 2010 OCTOBER 21 FROM THREE VIEWPOINTS

    SciTech Connect

    Filippov, Boris

    2013-08-10

    A filament eruption on 2010 October 21 observed from three different viewpoints by the Solar Terrestrial Relations Observatory and the Solar Dynamic Observatory is analyzed by also invoking data from the Solar and Heliospheric Observatory and the Kanzelhoehe Solar Observatory. The position of the filament just before the eruption at the central meridian not far from the center of the solar disk was favorable for photospheric magnetic field measurements in the area below the filament. Because of this, we were able to calculate with high precision the distribution of the coronal potential magnetic field near the filament. We found that the filament began to erupt when it approached the height in the corona where the magnetic field decay index was greater than 1. We also determined that during the initial stage of the eruption the filament moved along the magnetic neutral surface.

  19. Filamentation Instability of Counterpropagating Charged Particle Beams: Statistical Properties

    SciTech Connect

    Dieckmann, M. E.

    2008-10-15

    The filamentation instability (FI) driven by beams of counter-propagating electrons is examined with one-dimensional (1D) and two-dimensional (2D) particle-in-cell (PIC) simulations. The 1D simulation reveals the saturation mechanism of the FI. The magnetic pressure gradient displaces the electrons. The resulting electrostatic field inhibits together with the magnetic field a further growth of the filaments by suppressing the electron motion. The FI evolves into a stationary equilibrium in 1D, which shows a statistical distribution of the filament sizes that resembles a Gumbel distribution. The 2D PIC simulation allows the filaments to move around each other and filaments carrying currents of equal polarity can merge. The time-evolution of the characteristic size of the filaments in the 2D simulation is measured. It increases linearly with the time.

  20. Adhesive micropatterns to study intermediate filament function in nuclear positioning.

    PubMed

    Dupin, Isabelle; Elric, Julien; Etienne-Manneville, Sandrine

    2015-01-01

    The nucleus is generally found near the cell center; however its position can vary in response to extracellular or intracellular signals, leading to a polarized intracellular organization. Nuclear movement is mediated by the cytoskeleton and its associated motors. While the role of actin and microtubule cytoskeletons in nuclear positioning has been assessed in various systems, the contribution of intermediate filaments is less established due in part to the lack of tools to study intermediate filament functions. The methods described here use micropatterned substrates to impose reproducible cell shape and nucleus position. Intermediate filament organization can be perturbed using gene downregulation or upregulation; intermediate filaments can also be visualized using fluorescent intermediate filament proteins. This protocol is valuable for characterizing the role of intermediate filaments in a variety of live or fixed adherent cells.

  1. Composition, buoyancy regulation and fate of ice algal aggregates in the Central Arctic Ocean.

    PubMed

    Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L; Glud, Ronnie N; Boetius, Antje

    2014-01-01

    Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8-35 and 9-40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m(-2), maintaining an estimated net primary production of 0.4-40 mg C m(-2) d(-1), and accounted for 3-80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities. PMID:25208058

  2. Composition, buoyancy regulation and fate of ice algal aggregates in the Central Arctic Ocean.

    PubMed

    Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L; Glud, Ronnie N; Boetius, Antje

    2014-01-01

    Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8-35 and 9-40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m(-2), maintaining an estimated net primary production of 0.4-40 mg C m(-2) d(-1), and accounted for 3-80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities.

  3. Composition, Buoyancy Regulation and Fate of Ice Algal Aggregates in the Central Arctic Ocean

    PubMed Central

    Fernández-Méndez, Mar; Wenzhöfer, Frank; Peeken, Ilka; Sørensen, Heidi L.; Glud, Ronnie N.; Boetius, Antje

    2014-01-01

    Sea-ice diatoms are known to accumulate in large aggregates in and under sea ice and in melt ponds. There is recent evidence from the Arctic that such aggregates can contribute substantially to particle export when sinking from the ice. The role and regulation of microbial aggregation in the highly seasonal, nutrient- and light-limited Arctic sea-ice ecosystem is not well understood. To elucidate the mechanisms controlling the formation and export of algal aggregates from sea ice, we investigated samples taken in late summer 2011 and 2012, during two cruises to the Eurasian Basin of the Central Arctic Ocean. Spherical aggregates densely packed with pennate diatoms, as well as filamentous aggregates formed by Melosira arctica showed sign of different stages of degradation and physiological stoichiometries, with carbon to chlorophyll a ratios ranging from 110 to 66700, and carbon to nitrogen molar ratios of 8–35 and 9–40, respectively. Sub-ice algal aggregate densities ranged between 1 and 17 aggregates m−2, maintaining an estimated net primary production of 0.4–40 mg C m−2 d−1, and accounted for 3–80% of total phototrophic biomass and up to 94% of local net primary production. A potential factor controlling the buoyancy of the aggregates was light intensity, regulating photosynthetic oxygen production and the amount of gas bubbles trapped within the mucous matrix, even at low ambient nutrient concentrations. Our data-set was used to evaluate the distribution and importance of Arctic algal aggregates as carbon source for pelagic and benthic communities. PMID:25208058

  4. Filament Eruptions, Jets, and Space Weather

    NASA Technical Reports Server (NTRS)

    Moore, Ronald; Sterling, Alphonse; Robe, Nick; Falconer, David; Cirtain, Jonathan

    2013-01-01

    Previously, from chromospheric H alpha and coronal X-ray movies of the Sun's polar coronal holes, it was found that nearly all coronal jets (greater than 90%) are one or the other of two roughly equally common different kinds, different in how they erupt: standard jets and blowout jets (Yamauchi et al 2004, Apl, 605, 5ll: Moore et all 2010, Apj, 720, 757). Here, from inspection of SDO/AIA He II 304 A movies of 54 polar x-ray jets observed in Hinode/XRT movies, we report, as Moore et al (2010) anticipated, that (1) most standard x-ray jets (greater than 80%) show no ejected plasma that is cool enough (T is less than or approximately 10(exp 5K) to be seen in the He II 304 A movies; (2) nearly all blownout X-ray jets (greater than 90%) show obvious ejection of such cool plasma; (3) whereas when cool plasma is ejected in standard X-ray jets, it shows no lateral expansion, the cool plasma ejected in blowout X-ray jets shows strong lateral expansion; and (4) in many blowout X-ray jets, the cool plasma ejection displays the erupting-magnetic-rope form of clasic filament eruptions and is thereby seen to be a miniature filament eruption. The XRT movies also showed most blowout X-ray jets to be larger and brighter, and hence to apparently have more energy, than most standard X-ray jets. These observations (1) confirm the dichotomy of coronal jets, (2) agree with the Shibata model for standard jets, and (3) support the conclusion of Moore et al (2010) that in blowout jets the magnetic-arch base of the jet erupts in the manner of the much larger magnetic arcades in which the core field, the field rooted along the arcade's polarity inversion line, is sheared and twisted (sigmoid), often carries a cool-plasma filament, and erupts to blowout the arcade, producing a CME. From Hinode/SOT Ca II movies of the polar limb, Sterling et al (2010, ApJ, 714, L1) found that chromospheric Type-II spicules show a dichotomy of eruption dynamics similar to that found here for the cool

  5. Mechanism of Actin Filament Bundling by Fascin

    SciTech Connect

    Jansen, Silvia; Collins, Agnieszka; Yang, Changsong; Rebowski, Grzegorz; Svitkina, Tatyana; Dominguez, Roberto

    2013-03-07

    Fascin is the main actin filament bundling protein in filopodia. Because of the important role filopodia play in cell migration, fascin is emerging as a major target for cancer drug discovery. However, an understanding of the mechanism of bundle formation by fascin is critically lacking. Fascin consists of four {beta}-trefoil domains. Here, we show that fascin contains two major actin-binding sites, coinciding with regions of high sequence conservation in {beta}-trefoil domains 1 and 3. The site in {beta}-trefoil-1 is located near the binding site of the fascin inhibitor macroketone and comprises residue Ser-39, whose phosphorylation by protein kinase C down-regulates actin bundling and formation of filopodia. The site in {beta}-trefoil-3 is related by pseudo-2-fold symmetry to that in {beta}-trefoil-1. The two sites are {approx}5 nm apart, resulting in a distance between actin filaments in the bundle of {approx}8.1 nm. Residue mutations in both sites disrupt bundle formation in vitro as assessed by co-sedimentation with actin and electron microscopy and severely impair formation of filopodia in cells as determined by rescue experiments in fascin-depleted cells. Mutations of other areas of the fascin surface also affect actin bundling and formation of filopodia albeit to a lesser extent, suggesting that, in addition to the two major actin-binding sites, fascin makes secondary contacts with other filaments in the bundle. In a high resolution crystal structure of fascin, molecules of glycerol and polyethylene glycol are bound in pockets located within the two major actin-binding sites. These molecules could guide the rational design of new anticancer fascin inhibitors.

  6. Concentration profiles in drying cylindrical filaments

    NASA Astrophysics Data System (ADS)

    Czaputa, Klaus; Brenn, Günter; Meile, Walter

    2008-12-01

    We analyze theoretically the drying of cylindrical filaments. For modelling the mass transfer on the gas side of the liquid-gas interface of the shrinking circular cylindrical filament, we apply the model of Abramzon and Sirignano, which was originally developed for spherical geometry. As a consequence of mass transfer at constant Sherwood number, we obtain a d2-law for the shrinkage of the cylinder as in the case of the spherical geometry, which expresses that the cross-sectional area of the cylinder shrinks at a constant rate with time. For this situation, the diffusion equation for the liquid phase mixture components becomes separable upon transformation into similarity coordinates and is solved analytically to obtain the concentration profiles inside the filament as functions of time. The dependency of the profiles on the radial coordinate is determined by a series of Kummer’s functions. Applying this result, we study the evolution of the concentration profiles in the liquid phase with time as dependent on a parameter given as the ratio of rate of shrinkage of the cross-sectional area of the cylinder to liquid-phase diffusion coefficient, which was identified as relevant for the shape of the concentration profiles formed in the liquid during the drying process. As an example, we present computed results for the constant evaporation rate regime in the dry-spinning process of a polyvinyl-alcohol (PVA)-water system. Comparison of our analytical results with full numerical solutions of the diffusion equation from the literature, achieved with concentration-dependent diffusion coefficient, reveals very good agreement.

  7. Numerical simulations of a filament in a flowing soap film

    NASA Astrophysics Data System (ADS)

    Farnell, D. J. J.; David, T.; Barton, D. C.

    2004-01-01

    Experiments concerning the properties of soap films have recently been carried out and these systems have been proposed as experimental versions of theoretical two-dimensional liquids. A silk filament introduced into a flowing soap film, was seen to demonstrate various stable modes, and these were, namely, a mode in which the filament oscillates and one in which the filament is stationary and aligns with the flow of the liquid. The system could be forced from the oscillatory mode into the non- oscillatory mode by varying the length of the filament. In this article we use numerical and computational techniques in order to simulate the strongly coupled behaviour of the filament and the fluid. Preliminary results are presented for the specific case in which the filament is seen to oscillate continuously for the duration of our simulation. We also find that the filament oscillations are strongly suppressed when we reduce the effective length of the filament. We believe that these results are reminiscent of the different oscillatory and non-oscillatory modes observed in experiment. The numerical solutions show that, in contrast to experiment, vortices are created at the leading edge of the filament and are preferentially grown in the curvature of the filament and are eventually released from the trailing edge of the filament. In a similar manner to oscillating hydrofoils, it seems that the oscillating filaments are in a minimal energy state, extracting sufficient energy from the fluid to oscillate. In comparing numerical and experimental results it is possible that the soap film does have an effect on the fluid flow especially in the boundary layer where surface tension forces are large.

  8. Characterization of Osmotically Induced Filaments of Salmonella enterica

    PubMed Central

    Pratt, Zachary L.; Chen, Bingming; Czuprynski, Charles J.; Wong, Amy C. L.

    2012-01-01

    Salmonella enterica forms aseptate filaments with multiple nucleoids when cultured in hyperosmotic conditions. These osmotic-induced filaments are viable and form single colonies on agar plates even though they contain multiple genomes and have the potential to divide into multiple daughter cells. Introducing filaments that are formed during osmotic stress into culture conditions without additional humectants results in the formation of septa and their division into individual cells, which could present challenges to retrospective analyses of infectious dose and risk assessments. We sought to characterize the underlying mechanisms of osmotic-induced filament formation. The concentration of proteins and chromosomal DNA in filaments and control cells was similar when standardized by biomass. Furthermore, penicillin-binding proteins in the membrane of salmonellae were active in vitro. The activity of penicillin-binding protein 2 was greater in filaments than in control cells, suggesting that it may have a role in osmotic-induced filament formation. Filaments contained more ATP than did control cells in standardized cell suspensions, though the levels of two F0F1-ATP synthase subunits were reduced. Furthermore, filaments could septate and divide within 8 h in 0.2× Luria-Bertani broth at 23°C, while nonfilamentous control cells did not replicate. Based upon the ability of filaments to septate and divide in this diluted broth, a method was developed to enumerate by plate count the number of individual, viable cells within a population of filaments. This method could aid in retrospective analyses of infectious dose of filamented salmonellae. PMID:22798362

  9. Observations of the Growth of an Active Region Filament

    NASA Astrophysics Data System (ADS)

    Yang, Bo; Jiang, Yunchun; Yang, Jiayan; Bi, Yi; Li, Haidong

    2016-10-01

    We present observations of the growth of an active region filament caused by magnetic interactions among the filament and its adjacent superpenumbral filament (SF) and dark thread-like structures (T). Multistep reconnections are identified during the whole growing process. Magnetic flux convergence and cancellation occurring at the positive footpoint region of the filament is the first step reconnection, which resulted in the filament bifurcating into two sets of intertwined threads. One set anchored in situ, while the other set moved toward and interacted with the SF and part of T. This indicates the second step reconnection, which gave rise to the disappearance of the SF and the formation of a long thread-like structure that connects the far ends of the filament and T. The long thread-like structure further interacted with the T and then separated into two parts, representing the third step reconnection. Finally, another similar long thread-like structure, which intertwined with the fixed filament threads, appeared. H α observations show that this twisted structure is a longer sinistral filament. Based on the observed photospheric vector magnetograms, we performed a non-linear force-free field extrapolation to reconstruct the magnetic fields above the photosphere and found that the coronal magnetic field lines associated with the filament consists of two twisted flux ropes winding around each other. These results suggest that magnetic interactions among filaments and their adjacent SFs and T could lead to the growth of the filaments, and the filament is probably supported in a flux rope.

  10. Positioning and stretching of actin filaments by electric fields

    NASA Astrophysics Data System (ADS)

    Wigge, Christoph; Hinssen, Horst; Reiss, Günter; Herth, Simone

    2010-06-01

    The alignment of biological filaments on surfaces offers a high potential for controllable geometries in lab-on-a-chip-structures and micrototal analysis systems. Actin is a polar filamentous protein with a diameter of 7-8 nm that can be manipulated with strong electric fields. It is demonstrated that with the use of microelectrodes or nanoelectrodes and electric fields of 20 kV/m single actin filaments can be manipulated, stretched, and positioned between gold electrodes.

  11. Folding of viscous sheets and filaments

    NASA Astrophysics Data System (ADS)

    Skorobogatiy, M.; Mahadevan, L.

    2000-12-01

    We consider the nonlinear folding behavior of a viscous filament or a sheet under the influence of an external force such as gravity. Everyday examples of this phenomenon are provided by the periodic folding of a sheet of honey as it impinges on toast, or the folding of a stream of shampoo as it falls on one's hand. To understand the evolution of a fold, we formulate and solve a free-boundary problem for the phenomenon, give scaling laws for the size of the folds and the frequency with which they are laid out, and verify these experimentally.

  12. Hamiltonian Dynamics of Protein Filament Formation

    NASA Astrophysics Data System (ADS)

    Michaels, Thomas C. T.; Cohen, Samuel I. A.; Vendruscolo, Michele; Dobson, Christopher M.; Knowles, Tuomas P. J.

    2016-01-01

    We establish the Hamiltonian structure of the rate equations describing the formation of protein filaments. We then show that this formalism provides a unified view of the behavior of a range of biological self-assembling systems as diverse as actin, prions, and amyloidogenic polypeptides. We further demonstrate that the time-translation symmetry of the resulting Hamiltonian leads to previously unsuggested conservation laws that connect the number and mass concentrations of fibrils and allow linear growth phenomena to be equated with autocatalytic growth processes. We finally show how these results reveal simple rate laws that provide the basis for interpreting experimental data in terms of specific mechanisms controlling the proliferation of fibrils.

  13. Filament winding cylinders. I - Process model

    NASA Technical Reports Server (NTRS)

    Lee, Soo-Yong; Springer, George S.

    1990-01-01

    A model was developed which describes the filament winding process of composite cylinders. The model relates the significant process variables such as winding speed, fiber tension, and applied temperature to the thermal, chemical and mechanical behavior of the composite cylinder and the mandrel. Based on the model, a user friendly code was written which can be used to calculate (1) the temperature in the cylinder and the mandrel, (2) the degree of cure and viscosity in the cylinder, (3) the fiber tensions and fiber positions, (4) the stresses and strains in the cylinder and in the mandrel, and (5) the void diameters in the cylinder.

  14. The bacterial cytoskeleton: more than twisted filaments.

    PubMed

    Pilhofer, Martin; Jensen, Grant J

    2013-02-01

    Far from being simple 'bags' of enzymes, bacteria are richly endowed with ultrastructures that challenge and expand standard definitions of the cytoskeleton. Here we review rods, rings, twisted pairs, tubes, sheets, spirals, moving patches, meshes and composites, and suggest defining the term 'bacterial cytoskeleton' as all cytoplasmic protein filaments and their superstructures that move or scaffold (stabilize/position/recruit) other cellular materials. The evolution of each superstructure has been driven by specific functional requirements. As a result, while homologous proteins with different functions have evolved to form surprisingly divergent superstructures, those of unrelated proteins with similar functions have converged.

  15. The interaction energy of charged filaments in an electrolyte: Results for all filament spacings.

    PubMed

    Smith, D A

    2011-05-01

    Electrically charged long-chain macromolecules in an electrolyte can form an ordered lattice whose spacing is greater than their diameter. If entropic effects are neglected, these nematic structures can be predicted from a balance of Coulomb repulsion and van-der-Waals attraction forces. To enhance the utility of such theories, this paper extends existing results for the interaction between charged filaments, and gives approximate formulae for the screened Coulomb and van-der-Waals potentials over the whole range of their centre-to-centre spacing d. The repulsive Coulomb potential is proportional to exp(-λd)/λd for all spacings when the Debye screening length 1/λ is smaller than the sum of the filament radii. The attractive van-der-Waals potential is asymptotic to d⁻⁵ at large d. For smaller spacings, the potential is calculated by numerical integration and compared with published formulae: the series expansion of Brenner and McQuarrie converges too slowly, whereas the interpolation formula of Moisescu provides reasonable accuracy over the whole range of d. Combining these potentials shows that there is a finite range of charge densities for which a nematic crystal lattice is stable, but this conclusion ignores entropic effects associated with motile filaments. The role of electrostatic forces in aligning filaments and stabilizing a nematic liquid-crystal phase is discussed, in conjunction with other mechanisms such as motor proteins, crosslinkers or scaffolding structures. PMID:21295590

  16. Bundling of actin filaments by elongation factor 1 alpha inhibits polymerization at filament ends

    PubMed Central

    1996-01-01

    Elongation factor 1 alpha (EF1 alpha) is an abundant protein that binds aminoacyl-tRNA and ribosomes in a GTP-dependent manner. EF1 alpha also interacts with the cytoskeleton by binding and bundling actin filaments and microtubules. In this report, the effect of purified EF1 alpha on actin polymerization and depolymerization is examined. At molar ratios present in the cytosol, EF1 alpha significantly blocks both polymerization and depolymerization of actin filaments and increases the final extent of actin polymer, while at high molar ratios to actin, EF1 alpha nucleates actin polymerization. Although EF1 alpha binds actin monomer, this monomer-binding activity does not explain the effects of EF1 alpha on actin polymerization at physiological molar ratios. The mechanism for the inhibition of polymerization is related to the actin-bundling activity of EF1 alpha. Both ends of the actin filament are inhibited for polymerization and both bundling and the inhibition of actin polymerization are affected by pH within the same physiological range; at high pH both bundling and the inhibition of actin polymerization are reduced. Additionally, it is seen that the binding of aminoacyl-tRNA to EF1 alpha releases EF1 alpha's inhibiting effect on actin polymerization. These data demonstrate that EF1 alpha can alter the assembly of F-actin, a filamentous scaffold on which non- membrane-associated protein translation may be occurring in vivo. PMID:8947553

  17. The interaction energy of charged filaments in an electrolyte: Results for all filament spacings.

    PubMed

    Smith, D A

    2011-05-01

    Electrically charged long-chain macromolecules in an electrolyte can form an ordered lattice whose spacing is greater than their diameter. If entropic effects are neglected, these nematic structures can be predicted from a balance of Coulomb repulsion and van-der-Waals attraction forces. To enhance the utility of such theories, this paper extends existing results for the interaction between charged filaments, and gives approximate formulae for the screened Coulomb and van-der-Waals potentials over the whole range of their centre-to-centre spacing d. The repulsive Coulomb potential is proportional to exp(-λd)/λd for all spacings when the Debye screening length 1/λ is smaller than the sum of the filament radii. The attractive van-der-Waals potential is asymptotic to d⁻⁵ at large d. For smaller spacings, the potential is calculated by numerical integration and compared with published formulae: the series expansion of Brenner and McQuarrie converges too slowly, whereas the interpolation formula of Moisescu provides reasonable accuracy over the whole range of d. Combining these potentials shows that there is a finite range of charge densities for which a nematic crystal lattice is stable, but this conclusion ignores entropic effects associated with motile filaments. The role of electrostatic forces in aligning filaments and stabilizing a nematic liquid-crystal phase is discussed, in conjunction with other mechanisms such as motor proteins, crosslinkers or scaffolding structures.

  18. Hollow cylindrical plasma filament waveguide with discontinuous finite thickness cladding

    SciTech Connect

    Alshershby, Mostafa; Hao Zuoqiang; Lin Jingquan

    2013-01-15

    We have explored here a hollow cylindrical laser plasma multifilament waveguide with discontinuous finite thickness cladding, in which the separation between individual filaments is in the range of several millimeters and the waveguide cladding thickness is in the order of the microwave penetration depth. Such parameters give a closer representation of a realistic laser filament waveguide sustained by a long stable propagation of femtosecond (fs) laser pulses. We report how the waveguide losses depend on structural parameters like normalized plasma filament spacing, filament to filament distance or pitch, normal spatial frequency, and radius of the plasma filament. We found that for typical plasma parameters, the proposed waveguide can support guided modes of microwaves in extremely high frequency even with a cladding consisting of only one ring of plasma filaments. The loss of the microwave radiation is mainly caused by tunneling through the discontinuous finite cladding, i.e., confinement loss, and is weakly dependent on the plasma absorption. In addition, the analysis indicates that the propagation loss is fairly large compared with the loss of a plasma waveguide with a continuous infinite thickness cladding, while they are comparable when using a cladding contains more than one ring. Compared to free space propagation, this waveguide still presents a superior microwave transmission to some distance in the order of the filamentation length; thus, the laser plasma filaments waveguide may be a potential channel for transporting pulsed-modulated microwaves if ensuring a long and stable propagation of fs laser pulses.

  19. The two types of flare associated filament eruptions

    NASA Technical Reports Server (NTRS)

    Tang, F.

    1986-01-01

    Using years of high resolution solar footage obtained at Big Bear Solar Observatory flare associated filament eruptions were studied. In addition to the classical type eruption consisting of expansion and breakup, evidence was found of another type where a layer is shed from the filament and erupts while the inversion line filament below (or, what is left of it) remains in place. Both types of eruptions are presented. It is hoped that the new evidence will shed new light on the understanding of the role of filaments in flares.

  20. Actin filament organization in the fish keratocyte lamellipodium

    PubMed Central

    1995-01-01

    From recent studies of locomoting fish keratocytes it was proposed that the dynamic turnover of actin filaments takes place by a nucleation- release mechanism, which predicts the existence of short (less than 0.5 microns) filaments throughout the lamellipodium (Theriot, J. A., and T. J. Mitchison. 1991. Nature (Lond.). 352:126-131). We have tested this model by investigating the structure of whole mount keratocyte cytoskeletons in the electron microscope and phalloidin-labeled cells, after various fixations, in the light microscope. Micrographs of negatively stained keratocyte cytoskeletons produced by Triton extraction showed that the actin filaments of the lamellipodium are organized to a first approximation in a two-dimensional orthogonal network with the filaments subtending an angle of around 45 degrees to the cell front. Actin filament fringes grown onto the front edge of keratocyte cytoskeletons by the addition of exogenous actin showed a uniform polarity when decorated with myosin subfragment-1, consistent with the fast growing ends of the actin filaments abutting the anterior edge. A steady drop in filament density was observed from the mid- region of the lamellipodium to the perinuclear zone and in images of the more posterior regions of lower filament density many of the actin filaments could be seen to be at least several microns in length. Quantitative analysis of the intensity distribution of fluorescent phalloidin staining across the lamellipodium revealed that the gradient of filament density as well as the absolute content of F-actin was dependent on the fixation method. In cells first fixed and then extracted with Triton, a steep gradient of phalloidin staining was observed from the front to the rear of the lamellipodium. With the protocol required to obtain the electron microscope images, namely Triton extraction followed by fixation, phalloidin staining was, significantly and preferentially reduced in the anterior part of the lamellipodium. This

  1. Plasma temperature clamping in filamentation laser induced breakdown spectroscopy

    SciTech Connect

    Harilal, Sivanandan S.; Yeak, J.; Phillips, Mark C.

    2015-10-19

    Ultrafast laser filament induced breakdown spectroscopy is a very promising method for remote material detection. We present characteristics of plasmas generated in a metal target by laser filaments in air. Our measurements show that the temperature of the ablation plasma is clamped along the filamentation channel due to intensity clamping in a filament. Nevertheless, significant changes in radiation intensity are noticeable, and this is essentially due to variation in the number density of emitting atoms. The present results also partly explains the reason for the occurrence of atomic plume during fs LIBS in air compared to long-pulse ns LIBS.

  2. Controlling multiple filaments by relativistic optical vortex beams in plasmas

    NASA Astrophysics Data System (ADS)

    Ju, L. B.; Huang, T. W.; Xiao, K. D.; Wu, G. Z.; Yang, S. L.; Li, R.; Yang, Y. C.; Long, T. Y.; Zhang, H.; Wu, S. Z.; Qiao, B.; Ruan, S. C.; Zhou, C. T.

    2016-09-01

    Filamentation dynamics of relativistic optical vortex beams (OVBs) propagating in underdense plasma is investigated. It is shown that OVBs with finite orbital angular momentum (OAM) exhibit much more robust propagation behavior than the standard Gaussian beam. In fact, the growth rate of the azimuthal modulational instability decreases rapidly with increase of the OVB topological charge. Thus, relativistic OVBs can maintain their profiles for significantly longer distances in an underdense plasma before filamentation occurs. It is also found that an OVB would then break up into regular filament patterns due to conservation of the OAM, in contrast to a Gaussian laser beam, which in general experiences random filamentation.

  3. Interaction of Two Filament Channels of Different Chiralities

    NASA Astrophysics Data System (ADS)

    Joshi, Navin Chandra; Filippov, Boris; Schmieder, Brigitte; Magara, Tetsuya; moon, Young-Jae; Uddin, Wahab

    2016-07-01

    We present observations of the interactions between the two filament channels of different chiralities and associated dynamics that occurred during 2014 April 18-20. While two flux ropes of different helicity with parallel axial magnetic fields can only undergo a bounce interaction when they are brought together, the observations at first glance show that the heated plasma is moving from one filament channel to the other. The SDO/AIA 171 Å observations and the potential-field source-surface magnetic field extrapolation reveal the presence of a fan-spine magnetic configuration over the filament channels with a null point located above them. Three different events of filament activations, partial eruptions, and associated filament channel interactions have been observed. The activation initiated in one filament channel seems to propagate along the neighboring filament channel. We believe that the activation and partial eruption of the filaments brings the field lines of flux ropes containing them closer to the null point and triggers the magnetic reconnection between them and the fan-spine magnetic configuration. As a result, the hot plasma moves along the outer spine line toward the remote point. Utilizing the present observations, for the first time we have discussed how two different-chirality filament channels can interact and show interrelation.

  4. Defects on semiflexible filaments: Kinks and twist kinks

    NASA Astrophysics Data System (ADS)

    Lee, Nam-Kyung; Johner, Albert

    2016-04-01

    Due to local interactions with ligands or to global constraints, semiflexible filaments can exhibit localized defects. We focus on filaments laying flat on a surface. The two lowest order singularities are addressed: discontinuities of the orientation, which are called kink, and discontinuities of the curvature. The latter are called twist kinks in flattened helical filaments where they can form spontaneously. We calculate the partition functions for a given defect fugacity and discuss some often measured quantities like the correlation of the orientation along the filament.

  5. Microwave diagnostics of femtosecond laser-generated plasma filaments

    SciTech Connect

    Papeer, J.; Ehrlich, Y.; Zigler, A.; Mitchell, C.; Penano, J.; Sprangle, P.

    2011-10-03

    We present a simple non-intrusive experimental method allowing a complete single shot temporal measurement of laser produced plasma filament conductivity. The method is based on filament interaction with low intensity microwave radiation in a rectangular waveguide. The suggested diagnostics allow a complete single shot temporal analysis of filament plasma decay with resolution better than 0.3 ns and high spatial resolution along the filament. The experimental results are compared to numerical simulations, and an initial electron density of 7 x 10{sup 16 }cm{sup -3} and decay time of 3 ns are obtained.

  6. Modeling Vertical Plasma Flows in Solar Filament Barbs

    NASA Astrophysics Data System (ADS)

    Litvinenko, Y.

    2003-12-01

    Speeds of observed flows in quiescent solar filaments are typically much less than the local Alfvén speed. This is why the flows in filament barbs can be modeled by perturbing a local magnetostatic solution describing the balance between the Lorentz force, gravity, and gas pressure in a barb. Similarly, large-scale filament flows can be treated as adiabatically slow deformations of a force-free magnetic equilibrium that describes the global structure of a filament. This approach reconciles current theoretical models with the puzzling observational result that some of the flows appear to be neither aligned with the magnetic field nor controlled by gravity.

  7. An invertebrate smooth muscle with striated muscle myosin filaments

    PubMed Central

    Sulbarán, Guidenn; Alamo, Lorenzo; Pinto, Antonio; Márquez, Gustavo; Méndez, Franklin; Padrón, Raúl; Craig, Roger

    2015-01-01

    Muscle tissues are classically divided into two major types, depending on the presence or absence of striations. In striated muscles, the actin filaments are anchored at Z-lines and the myosin and actin filaments are in register, whereas in smooth muscles, the actin filaments are attached to dense bodies and the myosin and actin filaments are out of register. The structure of the filaments in smooth muscles is also different from that in striated muscles. Here we have studied the structure of myosin filaments from the smooth muscles of the human parasite Schistosoma mansoni. We find, surprisingly, that they are indistinguishable from those in an arthropod striated muscle. This structural similarity is supported by sequence comparison between the schistosome myosin II heavy chain and known striated muscle myosins. In contrast, the actin filaments of schistosomes are similar to those of smooth muscles, lacking troponin-dependent regulation. We conclude that schistosome muscles are hybrids, containing striated muscle-like myosin filaments and smooth muscle-like actin filaments in a smooth muscle architecture. This surprising finding has broad significance for understanding how muscles are built and how they evolved, and challenges the paradigm that smooth and striated muscles always have distinctly different components. PMID:26443857

  8. The interaction of a magnetohydrodynamical shock with a filament

    NASA Astrophysics Data System (ADS)

    Goldsmith, K. J. A.; Pittard, J. M.

    2016-09-01

    We present 3D magnetohydrodynamic numerical simulations of the adiabatic interaction of a shock with a dense, filamentary cloud. We investigate the effects of various filament lengths and orientations on the interaction using different orientations of the magnetic field, and vary the Mach number of the shock, the density contrast of the filament χ, and the plasma beta, in order to determine their effect on the evolution and lifetime of the filament. We find that in a parallel magnetic field filaments have longer lifetimes if they are orientated more `broadside' to the shock front, and that an increase in χ hastens the destruction of the cloud, in terms of the modified cloud-crushing time-scale, tcs. The combination of a mild shock and a perpendicular or oblique field provides the best condition for extending the life of the filament, with some filaments able to survive almost indefinitely since they are cocooned by the magnetic field. A high value for χ does not initiate large turbulent instabilities in either the perpendicular or oblique field cases but rather draws the filament out into long tendrils which may eventually fragment. In addition, flux ropes are only formed in parallel magnetic fields. The length of the filament is, however, not as important for the evolution and destruction of a filament.

  9. Degradation of the Intermediate Filament Family by Gigaxonin.

    PubMed

    Bomont, Pascale

    2016-01-01

    Intermediate filament turnover is a highly dynamic process required to maintain tissue integrity and is implicated in degenerative and regenerative processes. Despite these essential roles, little is known about the mechanisms that cause the degradation of intermediate filaments. Nevertheless, the last decade has seen the emergence of the ubiquitin proteasome system, in particular E3 ubiquitin ligases, as important regulators. Here, we will focus on the first identified factor controlling the degradation of the entire intermediate filament family, the gigaxonin-E3 ligase. We will present the scientific achievements and the methodologies to study gigaxonin and its crucial role in intermediate filament turnover.

  10. Properties of cosmological filaments extracted from Eulerian simulations

    NASA Astrophysics Data System (ADS)

    Gheller, C.; Vazza, F.; Favre, J.; Brüggen, M.

    2015-10-01

    Using a new parallel algorithm implemented within the VisIt framework, we analysed large cosmological grid simulations to study the properties of baryons in filaments. The procedure allows us to build large catalogues with up to ˜3 × 104 filaments per simulated volume and to investigate the properties of cosmic filaments for very large volumes at high resolution (up to 3003 Mpc3 simulated with 20483 cells). We determined scaling relations for the mass, volume, length and temperature of filaments and compared them to those of galaxy clusters. The longest filaments have a total length of about 200 Mpc with a mass of several 1015 M⊙. We also investigated the effects of different gas physics. Radiative cooling significantly modifies the thermal properties of the warm-hot-intergalactic medium of filaments, mainly by lowering their mean temperature via line cooling. On the other hand, powerful feedback from active galactic nuclei in surrounding haloes can heat up the gas in filaments. The impact of shock-accelerated cosmic rays from diffusive shock acceleration on filaments is small and the ratio between cosmic ray and gas pressure within filaments is of the order of ˜10-20 per cent.

  11. Seeking sunlight: rapid phototactic motility of filamentous mat-forming cyanobacteria optimize photosynthesis and enhance carbon burial in Lake Huron’s submerged sinkholes

    PubMed Central

    Biddanda, Bopaiah A.; McMillan, Adam C.; Long, Stephen A.; Snider, Michael J.; Weinke, Anthony D.

    2015-01-01

    We studied the motility of filamentous mat-forming cyanobacteria consisting primarily of Oscillatoria-like cells growing under low-light, low-oxygen, and high-sulfur conditions in Lake Huron’s submerged sinkholes using in situ observations, in vitro measurements and time-lapse microscopy. Gliding movement of the cyanobacterial trichomes (100–10,000 μm long filaments, composed of cells ∼10 μm wide and ∼3 μm tall) revealed individual as well as group-coordinated motility. When placed in a petri dish and dispersed in ground water from the sinkhole, filaments re-aggregated into defined colonies within minutes, then dispersed again. Speed of individual filaments increased with temperature from ∼50 μm min-1 or ∼15 body lengths min-1 at 10°C to ∼215 μm min-1 or ∼70 body lengths min-1 at 35°C – rates that are rapid relative to non-flagellated/ciliated microbes. Filaments exhibited precise and coordinated positive phototaxis toward pinpoints of light and congregated under the light of foil cutouts. Such light-responsive clusters showed an increase in photosynthetic yield – suggesting phototactic motility aids in light acquisition as well as photosynthesis. Once light source was removed, filaments slowly spread out evenly and re-aggregated, demonstrating coordinated movement through inter-filament communication regardless of light. Pebbles and pieces of broken shells placed upon intact mat were quickly covered by vertically motile filaments within hours and became fully buried in the anoxic sediments over 3–4 diurnal cycles – likely facilitating the preservation of falling debris. Coordinated horizontal and vertical filament motility optimize mat cohesion and dynamics, photosynthetic efficiency and sedimentary carbon burial in modern-day sinkhole habitats that resemble the shallow seas in Earth’s early history. Analogous cyanobacterial motility may have played a key role in the oxygenation of the planet by optimizing photosynthesis while

  12. Fractal aggregates in Titan's atmosphere

    NASA Astrophysics Data System (ADS)

    Cabane, M.; Rannou, P.; Chassefiere, E.; Israel, G.

    1993-04-01

    The cluster structure of Titan's atmosphere was modeled by using an Eulerian microphysical model with the specific formulation of microphysical laws applying to fractal particles. The growth of aggregates in the settling phase was treated by introducing the fractal dimension as a parameter of the model. The model was used to obtain a vertical distribution of size and number density of the aggregates for different production altitudes. Results confirm previous estimates of the formation altitude of photochemical aerosols. The vertical profile of the effective radius of aggregates was calculated as a function of the visible optical depth.

  13. Reduced receptor aggregation and altered cytoskeleton in cultured myocytes after space-flight

    NASA Technical Reports Server (NTRS)

    Gruener, R.; Roberts, R.; Reitstetter, R.

    1994-01-01

    We carried out parallel experiments first on the slow clinostat and then in space-flight to examine the effects of altered gravity on the aggregation of the nicotinic acetylcholine receptors and the structure of the cytoskeleton in cultured Xenopus embryonic muscle cells. By examining the concordance between results from space flight and the clinostat, we tested whether the slow clinostat is a relevant simulation paradigm. Space-flown cells showed marked changes in the distribution and organization of actin filaments and had a reduced incidence of acetylcholine receptor aggregates at the site of contact with polystyrene beads. Similar effects were found after clinostat rotation. The sensitivity of synaptic receptor aggregation and cytoskeletal morphology suggests that in the microgravity of space cell behavior may be importantly altered.

  14. Modeling of fractal intermediates in the self-assembly of silicatein filaments

    NASA Astrophysics Data System (ADS)

    Murr, Meredith; Thakur, Gunjan; Mezic, Igor; Morse, Daniel

    2006-03-01

    Silicateins are proteins with catalytic, structure-directing activity that are responsible for silica biosynthesis in certain sponges, Self-assembly of the silicatein monomers and oligomers was previously shown experimentally (Murr and Morse 2005) to form fibrous structures through the formation of diffusion limited, fractally patterned aggregates on the path to filament formation. We present a diffusion-limited aggregation (DLA) based model that is capable of capturing the basic properties of this self-assembly process. The Silicatein oligomer is modeled with three sites of attachment. Rules of attachment are specified that allow for specific interaction between these sites when oligomers are in proximity. The process differs from a DLA process in the following: 1) The process of aggregation is continued dynamically, i.e. the growing structures are spatially distributed and keep diffusing as they are growing 2) The molecules are oriented. Thus rotational diffusion is important. 3) The attachment can happen at more than 1 site and the strength of the active sites can be varied. We show that the self-assembled structures have a good level of similarity with the in-vitro experimental results. We quantify this by comparing the fractal dimension of the experimental data and the model output.

  15. Abnormal intermediate filament organization alters mitochondrial motility in giant axonal neuropathy fibroblasts.

    PubMed

    Lowery, Jason; Jain, Nikhil; Kuczmarski, Edward R; Mahammad, Saleemulla; Goldman, Anne; Gelfand, Vladimir I; Opal, Puneet; Goldman, Robert D

    2016-02-15

    Giant axonal neuropathy (GAN) is a rare disease caused by mutations in the GAN gene, which encodes gigaxonin, an E3 ligase adapter that targets intermediate filament (IF) proteins for degradation in numerous cell types, including neurons and fibroblasts. The cellular hallmark of GAN pathology is the formation of large aggregates and bundles of IFs. In this study, we show that both the distribution and motility of mitochondria are altered in GAN fibroblasts and this is attributable to their association with vimentin IF aggregates and bundles. Transient expression of wild-type gigaxonin in GAN fibroblasts reduces the number of IF aggregates and bundles, restoring mitochondrial motility. Conversely, silencing the expression of gigaxonin in control fibroblasts leads to changes in IF organization similar to that of GAN patient fibroblasts and a coincident loss of mitochondrial motility. The inhibition of mitochondrial motility in GAN fibroblasts is not due to a global inhibition of organelle translocation, as lysosome motility is normal. Our findings demonstrate that it is the pathological changes in IF organization that cause the loss of mitochondrial motility. PMID:26700320

  16. Abnormal intermediate filament organization alters mitochondrial motility in giant axonal neuropathy fibroblasts.

    PubMed

    Lowery, Jason; Jain, Nikhil; Kuczmarski, Edward R; Mahammad, Saleemulla; Goldman, Anne; Gelfand, Vladimir I; Opal, Puneet; Goldman, Robert D

    2016-02-15

    Giant axonal neuropathy (GAN) is a rare disease caused by mutations in the GAN gene, which encodes gigaxonin, an E3 ligase adapter that targets intermediate filament (IF) proteins for degradation in numerous cell types, including neurons and fibroblasts. The cellular hallmark of GAN pathology is the formation of large aggregates and bundles of IFs. In this study, we show that both the distribution and motility of mitochondria are altered in GAN fibroblasts and this is attributable to their association with vimentin IF aggregates and bundles. Transient expression of wild-type gigaxonin in GAN fibroblasts reduces the number of IF aggregates and bundles, restoring mitochondrial motility. Conversely, silencing the expression of gigaxonin in control fibroblasts leads to changes in IF organization similar to that of GAN patient fibroblasts and a coincident loss of mitochondrial motility. The inhibition of mitochondrial motility in GAN fibroblasts is not due to a global inhibition of organelle translocation, as lysosome motility is normal. Our findings demonstrate that it is the pathological changes in IF organization that cause the loss of mitochondrial motility.

  17. Structure and kinematics of the Bootes filament

    NASA Astrophysics Data System (ADS)

    Nasonova, O.; Karachentsev, I.; Karachentseva, V.

    2016-10-01

    Bootes filament of galaxies is a dispersed chain of groups residing on sky between the Local Void and the Virgo cluster. We consider a sample of 361 galaxies inside the sky area of RA = 13h0...18h.5 and Dec = .5°... + 10° with radial velocities VLG < 2000 km/s to clarify its structure and kinematics. In this region, 161 galaxies have individual distance estimates. We use these data to draw the Hubble relation for galaxy groups, pairs as well as the field galaxies, and to examine the galaxy distribution on peculiar velocities. Our analysis exposes the known Virgo-centric infall at RA < 14h and some signs of outflow from the Local Void at RA > 17h. According to the galaxy grouping criterion, this complex contains the members of 13 groups, 11 pairs and 140 field galaxies. The most prominent group is dominated by NGC 5846. The Bootes filament contains the total stellar mass of 2.7 ×1012 M⊙ and the total virial mass of 9.07×1013 M⊙, having the average density of dark matter to be Ωm = 0.09, i.e. a factor three lower than the global cosmic value.

  18. Characterising Radio Emissions in Cosmic Filaments

    NASA Astrophysics Data System (ADS)

    Miller, R. O.

    2014-02-01

    A growing number of radio studies probe galaxy clusters into the low-power regime in which star formation is the dominant source of radio emission. However, at the time of writing no comparably deep observations have focused exclusively on the radio populations of cosmic filaments. This thesis describes the ATCA 2.1 GHz observations and subsequent analysis of two such regions - labelled Zone 1 (between clusters A3158 and A3125/A3128) and Zone 2 (between A3135 and A3145) - in the Horologium-Reticulum Supercluster (HRS). Source count profiles of both populations are discussed and a radio luminosity function for Zone 1 is generated. While the source counts of Zone 2 appear to be consistent with expected values, Zone 1 exhibits an excess of counts across a wide flux range (1 mJy< S_1.4 < 200 mJy). An excess in radio activity at the lower extent of this range (log P_1.4 < 22.5; within the SF-dominated regime) is also suggested by the radio luminosity function for that region, and brief colour analysis suggests that such an excess is indeed predominantly associated with a starforming population. The differences between the two filamentary zones is attributed to cosmic variation. The regions are both small (~ 1 degree square), and are significantly separated in the HRS. Further radio observations of filaments are required and the results combined into a larger sample size in order to arrive at a generalised model filamentary population.

  19. Alfven wave filamentation and dispersive phase mixing

    SciTech Connect

    Sulem, P. L.; Passot, T.; Laveder, D.; Borgogno, D.

    2009-11-10

    The formation of three-dimensional magnetic structures from quasi-monochromatic left-hand polarized dispersive Alfven waves, under the effect of transverse collapse and/or the lensing effect of density channels aligned with the ambient magnetic field is discussed, both in the context of the usual Hall-MHD and using a fluid model retaining linear Landau damping and finite Larmor radius corrections. It is in particular shown that in a small-{beta} plasma (that is stable relatively to the filamentation instability in the absence of inhomogeneities), a moderate density enhancement leads the wave energy to concentrate into a filament whose transverse size is prescribed by the dimension of the channel, while for a strong density perturbation, this structure later on evolves to thin helical ribbons where the strong gradients permit dissipation processes to become efficient and heat the plasma. The outcome of this 'dispersive phase mixing' that leads to small-scale formation on relatively extended regions contrasts with the more localized oblique shocks formed in the absence of dispersion. Preliminary results on the effect of weak collisions that lead to an increase of the transverse ion temperature are also briefly mentioned.

  20. Filament-Prominence-Cme Magnetic Evolution Study

    NASA Astrophysics Data System (ADS)

    Bagala', L. G.; Mandrini, C. H.; Fernandez Borda, R.; de Pontieu, B.; Rovira, M. G.; Rank, G.

    1999-10-01

    The first results of the SOHO Joint Observation Program JOP 99 are outlined. JOP 99 involve several SOHO instruments (CDS, LASCO, MDI), together with TRACE, and two new ground-based instruments: HASTA (Hα Solar Telescope for Argentina) and MICA (Mirror Coronagraph for Argentina). The proposed program have a new motivation in taking advantage of the capabilities of the TRACE instrument, together with our experience in magnetic reconnection. The objective here is focused on the investigation of the conditions of the eruption of a prominence, often associated with the CME. JOP 99 is running at the moment that this abstract is submitted. It is a 5-days study of the filament/prominence, with 3-4 days observing the disk and 1-2 days observing the limb. While on disk, we will look for the eruption signatures in two ways: by studying the physical conditions in the filament and its surroundings (densities, temperature, abundances), and by looking at the magnetic topology changes. While at the limb, we will wait with luck for an eruption. If it does happen, LASCO and MICA observations will study if there exists an associated CME.

  1. Formation of a solar Hα filament from orphan penumbrae

    NASA Astrophysics Data System (ADS)

    Buehler, D.; Lagg, A.; van Noort, M.; Solanki, S. K.

    2016-05-01

    Aims: The formation and evolution of an Hα filament in active region (AR) 10953 is described. Methods: Observations from the Solar Optical Telescope (SOT) aboard the Hinode satellite starting from UT 18:09 on 27th April 2007 until UT 06:08 on 1st May 2007 were analysed. 20 scans of the 6302 Å Fe I line pair recorded by SOT/SP were inverted using the spatially coupled version of the SPINOR code. The inversions were analysed together with co-spatial SOT/BFI G-band and Ca II H and SOT/NFI Hα observations. Results: Following the disappearance of an initial Hα filament aligned along the polarity inversion line (PIL) of the AR, a new Hα filament formed in its place some 20 h later, which remained stable for, at least, another 1.5 days. The creation of the new Hα filament was driven by the ascent of horizontal magnetic fields from the photosphere into the chromosphere at three separate locations along the PIL. The magnetic fields at two of these locations were situated directly underneath the initial Hα filament and formed orphan penumbrae already aligned along the Hα filament channel. The 700 G orphan penumbrae were stable and trapped in the photosphere until the disappearance of the overlying initial Hα filament, after which they started to ascend into the chromosphere at 10 ± 5 m/s. Each ascent was associated with a simultaneous magnetic flux reduction of up to 50% in the photosphere. The ascended orphan penumbrae formed dark seed structures in Hα in parallel with the PIL, which elongated and merged to form an Hα filament. The filament channel featured horizontal magnetic fields of on average 260 G at log (τ) = -2 suspended above the nearly field-free lower photosphere. The fields took on an overall inverse configuration at log (τ) = -2 suggesting a flux rope topology for the new Hα filament. The destruction of the initial Hα filament was likely caused by the flux emergence at the third location along the PIL. Conclusions: We present a new

  2. Proper horizontal photospheric flows in a filament channel

    NASA Astrophysics Data System (ADS)

    Schmieder, B.; Roudier, T.; Mein, N.; Mein, P.; Malherbe, J. M.; Chandra, R.

    2014-04-01

    Context. An extended filament in the central part of the active region NOAA 11106 crossed the central meridian on Sept. 17, 2010 in the southern hemisphere. It has been observed in Hα with the THEMIS telescope in the Canary Islands and in 304 Å with the EUV imager (AIA) onboard the Solar Dynamic Observatory (SDO). Counterstreaming along the Hα threads and bright moving blobs (jets) along the 304 Å filament channel were observed during 10 h before the filament erupted at 17:03 UT. Aims: The aim of the paper is to understand the coupling between magnetic field and convection in filament channels and relate the horizontal photospheric motions to the activity of the filament. Methods: An analysis of the proper photospheric motions using SDO/HMI continuum images with the new version of the coherent structure tracking (CST) algorithm developed to track granules, as well as the large scale photospheric flows, was performed for three hours. Using corks, we derived the passive scalar points and produced a map of the cork distribution in the filament channel. Averaging the velocity vectors in the southern hemisphere in each latitude in steps of 3.5 arcsec, we defined a profile of the differential rotation. Results: Supergranules are clearly identified in the filament channel. Diverging flows inside the supergranules are similar in and out of the filament channel. Converging flows corresponding to the accumulation of corks are identified well around the Hα filament feet and at the edges of the EUV filament channel. At these convergence points, the horizontal photospheric velocity may reach 1 km s-1, but with a mean velocity of 0.35 km s-1. In some locations, horizontal flows crossing the channel are detected, indicating eventually large scale vorticity. Conclusions: The coupling between convection and magnetic field in the photosphere is relatively strong. The filament experienced the convection motions through its anchorage points with the photosphere, which are

  3. Actin filaments elongate from their membrane-associated ends

    PubMed Central

    Tilney, LG; Bonder, EM; DeRosier, DJ

    1981-01-01

    In limulus sperm an actin filament bundle 55 mum in length extends from the acrosomal vacuole membrane through a canal in the nucleus and then coils in a regular fashion around the base of the nucleus. The bundle expands systematically from 15 filaments near the acrosomal vacuole to 85 filaments at the basal end. Thin sections of sperm fixed during stages in spermatid maturation reveal that the filament bundle begins to assemble on dense material attached to the acrosomal vacuole membrane. In micrographs fo these early stages in maturation, short bundles are seen extending posteriorly from the dense material. The significance is that these short, developing bundles have about 85 filaments, suggesting that the 85-filament end of the bundle is assembled first. By using filament bundles isolated and incubated in vitro with G actin from muscle, we can determine the end “preferred” for addition of actin monomers during polymerization. The end that would be associated with the acrosomal vacuole membrane, a membrane destined to be continuous with the plasma membrane, is preferred about 10 times over the other, thicker end. Decoration of the newly polymerized portions of the filament bundle with subfragment 1 of myosin reveals that the arrowheads point away from the acrosomal vacuole membrane, as is true of other actin filament bundles attached to membranes. From these observations we conclude that the bundle is nucleated from the dense material associated with the acrosomal vacuole and that monomers are added to the membrane-associated end. As monomers are added at the dense material, the thick first-made end of the filament bundle is pushed down through the nucleus where, upon reaching the base of the nucleus, it coils up. Tapering is brought about by the capping of the peripheral filaments in the bundle. PMID:7197276

  4. A spatial investigation of the environmental controls over cryoconite aggregation on Longyearbreen glacier, Svalbard

    NASA Astrophysics Data System (ADS)

    Langford, H. J.; Irvine-Fynn, T. D. L.; Edwards, A.; Banwart, S. A.; Hodson, A. J.

    2014-02-01

    A cryoconite granule is a near-spherical aggregation of biota and abiotic particles found upon glacier surfaces. Recently, microstructural studies have revealed that photosynthetic microorganisms and extracellular polymeric substances (EPS) are omnipresent within cryoconite granules and have suggested their importance as biological "forming factors". To assess these forming factors, and their biological control over aggregate size and stability, across a typical Arctic valley glacier surface, a suite of rapid, spectrophotometric, microplate methods were utilised. Subsequent spatial mapping of these data revealed distinct patterns. Labile carbohydrates were found to increase up-glacier, suggestive of EPS production for cryoprotection and nutrient assimilation. Conversely, pigment concentrations were found to increase down-glacier, with the exception of a zone of hydraulic erosion, suggestive of a general reduction in physical disturbance and of the build-up of photosynthetic pigments and less labile cyanobacterial sheath material. Aggregate size was found to increase towards the glacier edges, linked to the input of particulate matter from the valley sides, and to broadly increase down-glacier, in the same way as pigment concentrations. Statistical analyses of transect data revealed that the photoautotrophic count and carbohydrate-chlorophyll ratio of the cryoconite sampled could explain 83% of the measured variation in aggregate size and stability. Considering solely aggregate size, the number and length of photoautrophic filaments could explain 92% of the variation in this parameter. These findings demonstrate the two-dimensional distribution of key biological controls upon cryoconite aggregation for the first time, and highlight the importance of filamentous cyanobacteria and EPS production to the development of stable cryoconite granules.

  5. A spatial investigation of the environmental controls over cryoconite aggregation on Longyearbreen glacier, Svalbard

    NASA Astrophysics Data System (ADS)

    Langford, H. J.; Irvine-Fynn, T. D. L.; Edwards, A.; Banwart, S. A.; Hodson, A. J.

    2014-10-01

    A cryoconite granule is a near-spherical aggregation of biota and abiotic particles found upon glacier surfaces. Recently, microstructural studies have revealed that photosynthetic microorganisms and extracellular polymeric substances (EPS) are omnipresent within cryoconite granules and have suggested their importance as biological "forming factors". To assess these forming factors, and their biological control over aggregate size and stability, across a typical Arctic valley glacier surface, a suite of rapid, spectrophotometric, microplate methods were utilised. Subsequent spatial mapping of these data revealed distinct patterns. Labile carbohydrates were found to increase up-glacier, suggestive of EPS production for cryoprotection and nutrient assimilation. Conversely, pigment concentrations were found to increase towards the glacier terminus and valley sides, suggestive of allochthonous input, a general reduction in physical disturbance and of the build-up of photosynthetic pigments and less labile cyanobacterial sheath material. Aggregate size was found to increase towards the glacier edges, linked to the input of particulate matter from the valley sides, and to broadly increase down-glacier, in the same way as pigment concentrations. Statistical analyses of transect data revealed that the photoautotrophic count and carbohydrate-chlorophyll ratio of the cryoconite sampled could explain 83% of the measured variation in aggregate size and stability. Considering solely aggregate size, the number and length of photoautotrophic filaments could explain 92% of the variation in this parameter. These findings demonstrate the two-dimensional distribution of key biological controls upon cryoconite aggregation for the first time, and highlight the importance of filamentous cyanobacteria and EPS production to the development of stable cryoconite granules.

  6. Surface fractals in liposome aggregation.

    PubMed

    Roldán-Vargas, Sándalo; Barnadas-Rodríguez, Ramon; Quesada-Pérez, Manuel; Estelrich, Joan; Callejas-Fernández, José

    2009-01-01

    In this work, the aggregation of charged liposomes induced by magnesium is investigated. Static and dynamic light scattering, Fourier-transform infrared spectroscopy, and cryotransmission electron microscopy are used as experimental techniques. In particular, multiple intracluster scattering is reduced to a negligible amount using a cross-correlation light scattering scheme. The analysis of the cluster structure, probed by means of static light scattering, reveals an evolution from surface fractals to mass fractals with increasing magnesium concentration. Cryotransmission electron microscopy micrographs of the aggregates are consistent with this interpretation. In addition, a comparative analysis of these results with those previously reported in the presence of calcium suggests that the different hydration energy between lipid vesicles when these divalent cations are present plays a fundamental role in the cluster morphology. This suggestion is also supported by infrared spectroscopy data. The kinetics of the aggregation processes is also analyzed through the time evolution of the mean diffusion coefficient of the aggregates. PMID:19257067

  7. Surface fractals in liposome aggregation.

    PubMed

    Roldán-Vargas, Sándalo; Barnadas-Rodríguez, Ramon; Quesada-Pérez, Manuel; Estelrich, Joan; Callejas-Fernández, José

    2009-01-01

    In this work, the aggregation of charged liposomes induced by magnesium is investigated. Static and dynamic light scattering, Fourier-transform infrared spectroscopy, and cryotransmission electron microscopy are used as experimental techniques. In particular, multiple intracluster scattering is reduced to a negligible amount using a cross-correlation light scattering scheme. The analysis of the cluster structure, probed by means of static light scattering, reveals an evolution from surface fractals to mass fractals with increasing magnesium concentration. Cryotransmission electron microscopy micrographs of the aggregates are consistent with this interpretation. In addition, a comparative analysis of these results with those previously reported in the presence of calcium suggests that the different hydration energy between lipid vesicles when these divalent cations are present plays a fundamental role in the cluster morphology. This suggestion is also supported by infrared spectroscopy data. The kinetics of the aggregation processes is also analyzed through the time evolution of the mean diffusion coefficient of the aggregates.

  8. Electromagnetic charges in aggregation phenomena.

    NASA Astrophysics Data System (ADS)

    Rioux, Claude; Slobodrian, R. J.

    Introduction The mechanism of fine particles aggregation is of great importance in many areas of research, in particular environment sciences where the state of aggregation defines the removal speed of dust from the atmosphere. The study of this mechanism is also important to understand the first stage of planet formation from the solar nebula. The aggregates formed are generally fractals and, as mentioned in the literature [1], the fractal dimensions and the site growth probability measures of the resulting fractal structures strongly depend on the properties of the forces that cause the aggregation. Theory and experimental apparatus We began this study by the aggregation between two charged particles and we are now consid-ering the aggregation between two magnetized particles. The aggregations are produced in a gas at a pressure between 10 and 1000 mbar and by using the applicable simplifications; we find that the distance (r) between the particles as a function of time (t) is given by the following equations: r=Ce(tf -t)1/3 for the electrical attraction r=Cm(tf -t)1/5 for the magnetic dipoles aligned in an external magnetic field. The apparatus built for these measurements consists of an experimental cell from which two perpendicular views are combined via an optical system in one image recorded by a video camera. From the video, we can then measure the distance between the particles as a function of time and reconstruct the trajectories in 3-D. The horizontal and vertical resolutions are respectively 0.86 and 0.92 microns per pixel. With a depth of field of 250 microns, the usable volume for 3-D observation in then 250 microns x 250 microns x 443 microns. Results and discussion A first version of the apparatus was tested on an electrical force aggregation and the results [2] show that the corresponding equation is a good representation of the phenomenon. Preliminary results, from an experiment using iron particles, show that the magnetic force can be seen in

  9. Aggregate breakdown of nanoparticulate titania

    NASA Astrophysics Data System (ADS)

    Venugopal, Navin

    Six nanosized titanium dioxide powders synthesized from a sulfate process were investigated. The targeted end-use of this powder was for a de-NOx catalyst honeycomb monolith. Alteration of synthesis parameters had resulted principally in differences in soluble ion level and specific surface area of the powders. The goal of this investigation was to understand the role of synthesis parameters in the aggregation behavior of these powders. Investigation via scanning electron microscopy of the powders revealed three different aggregation iterations at specific length scales. Secondary and higher order aggregate strength was investigated via oscillatory stress rheometry as a means of simulating shear conditions encountered during extrusion. G' and G'' were measured as a function of the applied oscillatory stress. Oscillatory rheometry indicated a strong variation as a function of the sulfate level of the particles in the viscoelastic yield strengths. Powder yield stresses ranged from 3.0 Pa to 24.0 Pa of oscillatory stress. Compaction curves to 750 MPa found strong similarities in extrapolated yield point of stage I and II compaction for each of the powders (at approximately 500 MPa) suggesting that the variation in sulfate was greatest above the primary aggregate level. Scanning electron microscopy of samples at different states of shear in oscillatory rheometry confirmed the variation in the linear elastic region and the viscous flow regime. A technique of this investigation was to approach aggregation via a novel perspective: aggregates are distinguished as being loose open structures that are highly disordered and stochastic in nature. The methodology used was to investigate the shear stresses required to rupture the various aggregation stages encountered and investigate the attempt to realign the now free-flowing constituents comprising the aggregate into a denser configuration. Mercury porosimetry was utilized to measure the pore size of the compact resulting from

  10. Lamin aggregation is an early sensor of porphyria-induced liver injury.

    PubMed

    Singla, Amika; Griggs, Nicholas W; Kwan, Raymond; Snider, Natasha T; Maitra, Dhiman; Ernst, Stephen A; Herrmann, Harald; Omary, M Bishr

    2013-07-15

    Oxidative liver injury during steatohepatitis results in aggregation and transglutaminase-2 (TG2)-mediated crosslinking of the keratin cytoplasmic intermediate filament proteins (IFs) to form Mallory-Denk body (MDB) inclusions. The effect of liver injury on lamin nuclear IFs is unknown, though lamin mutations in several human diseases result in lamin disorganization and nuclear shape changes. We tested the hypothesis that lamins undergo aggregation during oxidative liver injury using two MDB mouse models: (i) mice fed the porphyrinogenic drug 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC) and (ii) mice that harbor a mutation in ferrochelatase (fch), which converts protoporphyrin IX to heme. Dramatic aggregation of lamin A/C and B1 was noted in the livers of both models in association with changes in lamin organization and nuclear shape, as determined by immunostaining and electron microscopy. The lamin aggregates sequester other nuclear proteins including transcription factors and ribosomal and nuclear pore components into high molecular weight complexes, as determined by mass-spectrometry and confirmed biochemically. Lamin aggregate formation is rapid and precedes keratin aggregation in fch livers, and is seen in liver explants of patients with alcoholic cirrhosis. Exposure of cultured cells to DDC, protoporphyrin IX or N-methyl-protoporphyrin, or incubation of purified lamins with protoporphyrin IX, also results in lamin aggregation. In contrast, lamin aggregation is ameliorated by TG2 inhibition. Therefore, lamin aggregation is an early sensor of porphyria-associated liver injury and might serve to buffer oxidative stress. The nuclear shape and lamin defects associated with porphyria phenocopy the changes seen in laminopathies and could result in transcriptional alterations due to sequestration of nuclear proteins.

  11. Hsp70 and antifibrillogenic peptides promote degradation and inhibit intracellular aggregation of amyloidogenic light chains.

    SciTech Connect

    Dul, J. L.; Davis, D. P.; Williamson, E. K.; Stevens, F. J.; Argon, Y.; Univ. of Chicago

    2001-02-19

    In light chain (LC) amyloidosis an immunoglobulin LC assembles into fibrils that are deposited in various tissues. Little is known about how these fibrils form in vivo. We previously showed that a known amyloidogenic LC, SMA, can give rise to amyloid fibrils in vitro when a segment of one of its {beta} sheets undergoes a conformational change, exposing an Hsp70 binding site. To examine SMA aggregation in vivo, we expressed it and its wild-type counterpart, LEN, in COS cells. While LEN is rapidly oxidized and subsequently secreted, newly synthesized SMA remains in the reduced state. Most SMA molecules are dislocated out of the ER into the cytosol, where they are ubiquitinylated and degraded by proteasomes. A parallel pathway for molecules that are not degraded is condensation into perinuclear aggresomes that are surrounded by vimentin-containing intermediate filaments and are dependent upon intact microtubules. Inhibition of proteasome activity shifts the balance toward aggresome formation. Intracellular aggregation is decreased and targeting to proteasomes improved by overexpression of the cytosolic chaperone Hsp70. Importantly, transduction into the cell of an Hsp70 target peptide, derived from the LC sequence, also reduces aggresome formation and increases SMA degradation. These results demonstrate that an amyloidogenic LC can aggregate intracellularly despite the common presentation of extracellular aggregates, and that a similar molecular surface mediates both in vitro fibril formation and in vivo aggregation. Furthermore, rationally designed peptides can be used to suppress this aggregation and may provide a feasible therapeutic approach.

  12. Glycation precedes lens crystallin aggregation

    SciTech Connect

    Swamy, M.S.; Perry, R.E.; Abraham, E.C.

    1987-05-01

    Non-enzymatic glycosylation (glycation) seems to have the potential to alter the structure of crystallins and make them susceptible to thiol oxidation leading to disulfide-linked high molecular weight (HMW) aggregate formation. They used streptozotocin diabetic rats during precataract and cataract stages and long-term cell-free glycation of bovine lens crystallins to study the relationship between glycation and lens crystallin aggregation. HMW aggregates and other protein components of the water-soluble (WS) and urea-soluble (US) fractions were separated by molecular sieve high performance liquid chromatography. Glycation was estimated by both (/sup 3/H)NaBH/sub 4/ reduction and phenylboronate agarose affinity chromatography. Levels of total glycated protein (GP) in the US fractions were about 2-fold higher than in the WS fractions and there was a linear increase in GP in both WS and US fractions. This increase was parallelled by a corresponding increase in HMW aggregates. Total GP extracted by the affinity method from the US fraction showed a predominance of HMW aggregates and vice versa. Cell-free glycation studies with bovine crystallins confirmed the results of the animals studies. Increasing glycation caused a corresponding increase in protein insolubilization and the insoluble fraction thus formed also contained more glycated protein. It appears that lens protein glycation, HMW aggregate formation, and protein insolubilization are interrelated.

  13. In Sup35p filaments (the [PSI+] prion), the globular C-terminal domains are widely offset from the amyloid fibril backbone

    SciTech Connect

    Baxa, U.; Wall, J.; Keller, P. W.; Cheng, N.; Steven, A. C.

    2011-01-01

    In yeast cells infected with the [PSI+] prion, Sup35p forms aggregates and its activity in translation termination is downregulated. Transfection experiments have shown that Sup35p filaments assembled in vitro are infectious, suggesting that they reproduce or closely resemble the prion. We have used several EM techniques to study the molecular architecture of filaments, seeking clues as to the mechanism of downregulation. Sup35p has an N-terminal 'prion' domain; a highly charged middle (M-)domain; and a C-terminal domain with the translation termination activity. By negative staining, cryo-EM and scanning transmission EM (STEM), filaments of full-length Sup35p show a thin backbone fibril surrounded by a diffuse 65-nm-wide cloud of globular C-domains. In diameter ({approx}8 nm) and appearance, the backbones resemble amyloid fibrils of N-domains alone. STEM mass-per-unit-length data yield -1 subunit per 0.47 nm for N-fibrils, NM-filaments and Sup35p filaments, further supporting the fibril backbone model. The 30 nm radial span of decorating C-domains indicates that the M-domains assume highly extended conformations, offering an explanation for the residual Sup35p activity in infected cells, whereby the C-domains remain free enough to interact with ribosomes.

  14. Ash Aggregates in Proximal Settings

    NASA Astrophysics Data System (ADS)

    Porritt, L. A.; Russell, K.

    2012-12-01

    Ash aggregates are thought to have formed within and been deposited by the eruption column and plume and dilute density currents and their associated ash clouds. Moist, turbulent ash clouds are considered critical to ash aggregate formation by facilitating both collision and adhesion of particles. Consequently, they are most commonly found in distal deposits. Proximal deposits containing ash aggregates are less commonly observed but do occur. Here we describe two occurrences of vent proximal ash aggregate-rich deposits; the first within a kimberlite pipe where coated ash pellets and accretionary lapilli are found within the intra-vent sequence; and the second in a glaciovolcanic setting where cored pellets (armoured lapilli) occur within <1 km of the vent. The deposits within the A418 pipe, Diavik Diamond Mine, Canada, are the residual deposits within the conduit and vent of the volcano and are characterised by an abundance of ash aggregates. Coated ash pellets are dominant but are followed in abundance by ash pellets, accretionary lapilli and rare cored pellets. The coated ash pellets typically range from 1 - 5 mm in diameter and have core to rim ratios of approximately 10:1. The formation and preservation of these aggregates elucidates the style and nature of the explosive phase of kimberlite eruption at A418 (and other pipes?). First, these pyroclasts dictate the intensity of the kimberlite eruption; it must be energetic enough to cause intense fragmentation of the kimberlite to produce a substantial volume of very fine ash (<62 μm). Secondly, the ash aggregates indicate the involvement of moisture coupled with the presence of dilute expanded eruption clouds. The structure and distribution of these deposits throughout the kimberlite conduit demand that aggregation and deposition operate entirely within the confines of the vent; this indicates that aggregation is a rapid process. Ash aggregates within glaciovolcanic sequences are also rarely documented. The

  15. Localizing and extracting filament distributions from microscopy images.

    PubMed

    Basu, S; Liu, C; Rohde, G K

    2015-04-01

    Detailed quantitative measurements of biological filament networks represent a crucial step in understanding architecture and structure of cells and tissues, which in turn explain important biological events such as wound healing and cancer metastases. Microscopic images of biological specimens marked for different structural proteins constitute an important source for observing and measuring meaningful parameters of biological networks. Unfortunately, current efforts at quantitative estimation of architecture and orientation of biological filament networks from microscopy images are predominantly limited to visual estimation and indirect experimental inference. Here, we describe a new method for localizing and extracting filament distributions from 2D microscopy images of different modalities. The method combines a filter-based detection of pixels likely to contain a filament with a constrained reverse diffusion-based approach for localizing the filaments centrelines. We show with qualitative and quantitative experiments, using both simulated and real data, that the new method can provide more accurate centreline estimates of filament in comparison to other approaches currently available. In addition, we show the algorithm is more robust with respect to variations in the initial filter-based filament detection step often used. We demonstrate the application of the method in extracting quantitative parameters from confocal microscopy images of actin filaments and atomic force microscopy images of DNA fragments.

  16. Bending Flexibility of Actin Filaments during Motor-Induced Sliding

    PubMed Central

    Vikhorev, Petr G.; Vikhoreva, Natalia N.; Månsson, Alf

    2008-01-01

    Muscle contraction and other forms of cell motility occur as a result of cyclic interactions between myosin molecules and actin filaments. Force generation is generally attributed to ATP-driven structural changes in myosin, whereas a passive role is ascribed to actin. However, some results challenge this view, predicting structural changes in actin during motor activity, e.g., when the actin filaments slide on a myosin-coated surface in vitro. Here, we analyzed statistical properties of the sliding filament paths, allowing us to detect changes of this type. It is interesting to note that evidence for substantial structural changes that led to increased bending flexibility of the filaments was found in phalloidin-stabilized, but not in phalloidin-free, actin filaments. The results are in accordance with the idea that a high-flexibility structural state of actin is a prerequisite for force production, but not the idea that a low-to-high flexibility transition of the actin filament should be an important component of the force-generating step per se. Finally, our data challenge the general view that phalloidin-stabilized filaments behave as native actin filaments in their interaction with myosin. This has important implications, since phalloidin stabilization is a routine procedure in most studies of actomyosin function. PMID:18835897

  17. Myosin filament 3D structure in mammalian cardiac muscle☆

    PubMed Central

    AL-Khayat, Hind A.; Morris, Edward P.; Kensler, Robert W.; Squire, John M.

    2008-01-01

    A number of cardiac myopathies (e.g. familial hypertrophic cardiomyopathy and dilated cardiomyopathy) are linked to mutations in cardiac muscle myosin filament proteins, including myosin and myosin binding protein C (MyBP-C). To understand the myopathies it is necessary to know the normal 3D structure of these filaments. We have carried out 3D single particle analysis of electron micrograph images of negatively stained isolated myosin filaments from rabbit cardiac muscle. Single filament images were aligned and divided into segments about 2 × 430 Å long, each of which was treated as an independent ‘particle’. The resulting 40 Å resolution 3D reconstruction showed both axial and azimuthal (no radial) myosin head perturbations within the 430 Å repeat, with successive crown rotations of approximately 60°, 60° and 0°, rather than the regular 40° for an unperturbed helix. However, it is shown that the projecting density peaks appear to start at low radius from origins closer to those expected for an unperturbed helical filament, and that the azimuthal perturbation especially increases with radius. The head arrangements in rabbit cardiac myosin filaments are very similar to those in fish skeletal muscle myosin filaments, suggesting a possible general structural theme for myosin filaments in all vertebrate striated muscles (skeletal and cardiac). PMID:18472277

  18. A catalytic oligomeric motor that walks along a filament track

    NASA Astrophysics Data System (ADS)

    Huang, Mu-Jie; Kapral, Raymond

    2015-06-01

    Most biological motors in the cell execute chemically powered conformational changes as they walk on biopolymer filaments in order to carry out directed transport functions. Synthetic motors that operate in a similar manner are being studied since they have the potential to perform similar tasks in a variety of applications. In this paper, a synthetic nanomotor that moves along a filament track, without invoking motor conformational changes, is constructed and its properties are studied in detail. The motor is an oligomer comprising three linked beads with specific binding properties. The filament track is a stiff polymer chain, also described by a linear chain of linked coarse-grained molecular groups modeled as beads. Reactions on the filament that are catalyzed by a motor bead and use fuel in the environment, in conjunction within the binding affinities of the motor beads to the filament beads, lead to directed motion. The system operates out of equilibrium due to the state of the filament and supply of fuel. The motor, filament, and surrounding medium are all described at microscopic level that permits a full analysis of the motor motion. A stochastic model that captures the main trends seen in the simulations is also presented. The results of this study point to some of the key features that could be used to construct nanomotors that undergo biased walks powered by chemical reactions on filaments.

  19. A catalytic oligomeric motor that walks along a filament track.

    PubMed

    Huang, Mu-Jie; Kapral, Raymond

    2015-06-28

    Most biological motors in the cell execute chemically powered conformational changes as they walk on biopolymer filaments in order to carry out directed transport functions. Synthetic motors that operate in a similar manner are being studied since they have the potential to perform similar tasks in a variety of applications. In this paper, a synthetic nanomotor that moves along a filament track, without invoking motor conformational changes, is constructed and its properties are studied in detail. The motor is an oligomer comprising three linked beads with specific binding properties. The filament track is a stiff polymer chain, also described by a linear chain of linked coarse-grained molecular groups modeled as beads. Reactions on the filament that are catalyzed by a motor bead and use fuel in the environment, in conjunction within the binding affinities of the motor beads to the filament beads, lead to directed motion. The system operates out of equilibrium due to the state of the filament and supply of fuel. The motor, filament, and surrounding medium are all described at microscopic level that permits a full analysis of the motor motion. A stochastic model that captures the main trends seen in the simulations is also presented. The results of this study point to some of the key features that could be used to construct nanomotors that undergo biased walks powered by chemical reactions on filaments. PMID:26133457

  20. A catalytic oligomeric motor that walks along a filament track

    SciTech Connect

    Huang, Mu-Jie Kapral, Raymond

    2015-06-28

    Most biological motors in the cell execute chemically powered conformational changes as they walk on biopolymer filaments in order to carry out directed transport functions. Synthetic motors that operate in a similar manner are being studied since they have the potential to perform similar tasks in a variety of applications. In this paper, a synthetic nanomotor that moves along a filament track, without invoking motor conformational changes, is constructed and its properties are studied in detail. The motor is an oligomer comprising three linked beads with specific binding properties. The filament track is a stiff polymer chain, also described by a linear chain of linked coarse-grained molecular groups modeled as beads. Reactions on the filament that are catalyzed by a motor bead and use fuel in the environment, in conjunction within the binding affinities of the motor beads to the filament beads, lead to directed motion. The system operates out of equilibrium due to the state of the filament and supply of fuel. The motor, filament, and surrounding medium are all described at microscopic level that permits a full analysis of the motor motion. A stochastic model that captures the main trends seen in the simulations is also presented. The results of this study point to some of the key features that could be used to construct nanomotors that undergo biased walks powered by chemical reactions on filaments.

  1. Unlined Reuseable Filament Wound Composite Cryogenic Tank Testing

    NASA Technical Reports Server (NTRS)

    Murphy, A. W.; Lake, R. E.; Wilkerson, C.

    1999-01-01

    An unlined reusable filament wound composite cryogenic tank was tested at the Marshall Space Flight Center using LH2 cryogen and pressurization to 320 psig. The tank was fabricated by Phillips Laboratory and Wilson Composite Group, Inc., using an EnTec five-axis filament winder and sand mandrels. The material used was IM7/977-2 (graphite/epoxy).

  2. Method for simultaneously coating a plurality of filaments

    DOEpatents

    Miller, Paul A.; Pochan, Paul D.; Siegal, Michael P.; Dominguez, Frank

    1995-01-01

    Methods and apparatuses for coating materials, and the products and compositions produced thereby. Substances, such as diamond or diamond-like carbon, are deposited onto materials, such as a filament or a plurality of filaments simultaneously, using one or more cylindrical, inductively coupled, resonator plasma reactors.

  3. Characterization of femtosecond laser filament-fringes in titanium

    NASA Astrophysics Data System (ADS)

    Ahsan, Md. Shamim; Dewanda, Fadia; Ahmed, Farid; Jun, Martin B. G.; Lee, Man Seop

    2013-03-01

    In this paper, we characterize the femtosecond laser filament-fringes in titanium. In order to fabricate regular arrays of filaments, we place either a pinhole or a beam shaper in the optical path of the femtosecond laser beam that originates linear diffraction of the laser beam. Soda-lime glass is used as Kerr medium to produce the filaments. As a consequence, the intensity distribution of the laser beam is modulated and fringe type of filament distributions is evident. The suitable control over the size of the diaphragms (pinhole or beam shaper) leads us to adjust the shape, orientation, and number of filaments in each irradiated spots in titanium sample. By properly adjusting the diameter of a pinhole that was placed in the optical path, we are successful in forming a single filament in titanium. By using these single filaments, we fabricated high aspect ratio periodic holes in the titanium surface by moving the translation stage in both horizontal and vertical directions. The period of the holes in the horizontal direction is controlled by varying the scanning speed, whereas the period in the vertical direction is controlled by varying the vertical scanning step. We strongly believe that, filamentation technology described in this paper will have applications in forming a variety of micro/nano-structures in various materials.

  4. Magnetic Interaction: An Erupting Filament and a Remote Coronal Hole

    NASA Astrophysics Data System (ADS)

    Jiang, Yunchun; Yang, Liheng; Li, Kejun; Shen, Yuandeng

    2007-09-01

    For the first time, we present a rare observation of direct magnetic interaction between an erupting filament and a coronal hole (CH). The small active region filament obliquely erupted toward the CH getting in the way, met and interacted with it, and then was deflected back. The erupting filament thus underwent a distinct to-and-fro motion in the visible disk, while the CH was clearly disturbed by the interaction. Brightenings in Hα and EUV and darkenings in He I 10830 Å appeared at the boundaries and in the interior of the CH. This eruption was closely associated with the initiation of a halo-type coronal mass ejection (CME). The direction of the CME, despite being greatly different from that of the initial filament eruption, was consistent with that of the reflected filament. Moreover, when the CME was seen in the limb, the filament was still in the process of the return journey in the visible disk. Therefore, it appears that the large-scale structure of the CME was bounced against and then reflected away from the CH along with the filament, and the eruptive filament represented only a very small part in the CME.

  5. Method for simultaneously coating a plurality of filaments

    DOEpatents

    Miller, P.A.; Pochan, P.D.; Siegal, M.P.; Dominguez, F.

    1995-07-11

    Methods and apparatuses are disclosed for coating materials, and the products and compositions produced thereby. Substances, such as diamond or diamond-like carbon, are deposited onto materials, such as a filament or a plurality of filaments simultaneously, using one or more cylindrical, inductively coupled, resonator plasma reactors. 3 figs.

  6. Calibration and Temperature Profile of a Tungsten Filament Lamp

    ERIC Educational Resources Information Center

    de Izarra, Charles; Gitton, Jean-Michel

    2010-01-01

    The goal of this work proposed for undergraduate students and teachers is the calibration of a tungsten filament lamp from electric measurements that are both simple and precise, allowing to determine the temperature of tungsten filament as a function of the current intensity. This calibration procedure was first applied to a conventional filament…

  7. GALAXY SPIN ALIGNMENT IN FILAMENTS AND SHEETS: OBSERVATIONAL EVIDENCE

    SciTech Connect

    Tempel, Elmo; Libeskind, Noam I. E-mail: nlibeskind@aip.de

    2013-10-01

    The properties of galaxies are known to be affected by their environment. One important question is how their angular momentum reflects the surrounding cosmic web. We use the Sloan Digital Sky Survey to investigate the spin axes of spiral and elliptical galaxies relative to their surrounding filament/sheet orientations. To detect filaments, a marked point process with interactions (the {sup B}isous model{sup )} is used. Sheets are found by detecting 'flattened' filaments. The minor axes of ellipticals are found to be preferentially perpendicular to hosting filaments. A weak correlation is found with sheets. These findings are consistent with the notion that elliptical galaxies formed via mergers, which predominantly occurred along the filaments. The spin axis of spiral galaxies is found to align with the host filament, with no correlation between spiral spin and sheet normal. When examined as a function of distance from the filament axis, a much stronger correlation is found in the outer parts, suggesting that the alignment is driven by the laminar infall of gas from sheets to filaments. When compared with numerical simulations, our results suggest that the connection between dark matter halo and galaxy spin is not straightforward. Our results provide an important input to the understanding of how galaxies acquire their angular momentum.

  8. An Observational Detection of the Bridge Effect of Void Filaments

    NASA Astrophysics Data System (ADS)

    Shim, Junsup; Lee, Jounghun; Hoyle, Fiona

    2015-12-01

    The bridge effect of void filaments is a phrase coined by Park & Lee to explain the correlations found in a numerical experiment between the luminosity of the void galaxies and the degree of straightness of their host filaments. Their numerical finding implies that a straight void filament provides a narrow channel for the efficient transportation of gas and matter particles from the surroundings into void galaxies. Analyzing the Sloan void catalog constructed by Pan et al., we identify the filamentary structures in void regions and determine the specific size of each void filament as a measure of its straightness. To avoid possible spurious signals caused by Malmquist bias, we consider only those void filaments whose redshifts are in the range 0≤slant z≤slant 0.02 and find a clear tendency that the void galaxies located in the straighter filaments are on average more luminous, which is in qualitative agreement with the numerical prediction. It is also shown that the strength of correlation increases with the number of member galaxies in the void filaments, which can be understood physically on the grounds that the more stretched filaments can connect the dense surroundings even to galaxies located deep in the central parts of the voids. This observational evidence may provide a key clue to the puzzling issue of why the void galaxies have higher specific star formation rates and bluer colors than their wall counterparts.

  9. Detection of stacked filament lensing between SDSS luminous red galaxies

    NASA Astrophysics Data System (ADS)

    Clampitt, Joseph; Miyatake, Hironao; Jain, Bhuvnesh; Takada, Masahiro

    2016-04-01

    We search for the lensing signal of massive filaments between 135 000 pairs of luminous red galaxies (LRGs) from the Sloan Digital Sky Survey. We develop a new estimator that cleanly removes the much larger shear signal of the neighbouring LRG haloes, relying only on the assumption of spherical symmetry. We consider two models: a `thick'-filament model constructed from ray-tracing simulations for Λ cold dark matter model, and a `thin'-filament model which models the filament by a string of haloes along the line connecting the two LRGs. We show that the filament lensing signal is in nice agreement with the thick simulation filament, while strongly disfavouring the thin model. The magnitude of the lensing shear due to the filament is below 10-4. Employing the likelihood ratio test, we find a 4.5σ significance for the detection of the filament lensing signal, corresponding to a null hypothesis fluctuation probability of 3 × 10-6. We also carried out several null tests to verify that the residual shear signal from neighbouring LRGs and other shear systematics are minimized.

  10. Local stability of a gravitating filament: a dispersion relation

    NASA Astrophysics Data System (ADS)

    Freundlich, J.; Jog, C. J.; Combes, F.

    2014-04-01

    Filamentary structures are ubiquitous in astrophysics and are observed at various scales. On a cosmological scale, matter is usually distributed along filaments, and filaments are also typical features of the interstellar medium. Within a cosmic filament, matter can contract and form galaxies, whereas an interstellar gas filament can clump into a series of bead-like structures that can then turn into stars. To investigate the growth of such instabilities, we derive a local dispersion relation for an idealized self-gravitating filament and study some of its properties. Our idealized picture consists of an infinite self-gravitating and rotating cylinder with pressure and density related by a polytropic equation of state. We assume no specific density distribution, treat matter as a fluid, and use hydrodynamics to derive the linearized equations that govern the local perturbations. We obtain a dispersion relation for axisymmetric perturbations and study its properties in the (kR, kz) phase space, where kR and kz are the radial and longitudinal wavenumbers, respectively. While the boundary between the stable and unstable regimes is symmetrical in kR and kz and analogous to the Jeans criterion, the most unstable mode displays an asymmetry that could constrain the shape of the structures that form within the filament. Here the results are applied to a fiducial interstellar filament, but could be extended for other astrophysical systems, such as cosmological filaments and tidal tails. Appendices are available in electronic form at http://www.aanda.org

  11. Process for the production of superconductor containing filaments

    SciTech Connect

    Tuominen, Olli P.; Hoyt, Matthew B.; Mitchell, David F.; Morgan, Carol W.; Roberts, Clyde Gordon; Tyler, Robert A.

    2002-01-01

    Superconductor containing filaments having embedments of superconducting material surrounded by a rayon matrix are formed by preparing a liquid suspension which contains at least 10 weight percent superconducting material; forming a multicomponent filament having a core of the suspension and a viscose sheath which contains cellulose xanthate; and thereafter, regenerating cellulose from the cellulose xanthate to form a rayon matrix.

  12. Sedimentary Biosignatures of Social Organization in Cone-Forming Filamentous Bacteria

    NASA Astrophysics Data System (ADS)

    Tice, M. M.; Gong, J.; Zeng, Z.; Sneed, J.; Wehner, M.; Sparks, D. W.

    2013-12-01

    Conical mats consisting of centimeter-scale steep-sided cones growing above flat basal films form some of the most distinctive fossil microbial communities in the geologic record. Cones have been hypothesized to form by the initially random motion of filamentous bacteria into small tangled clumps followed by the phototactic motion of the same bacteria up resulting slopes. More recent models of cone development suggest that they form in response to growth in stagnant fluids where diffusion limits exchange of nutrients and wastes with the environment. Determining the biological and environmental factors that promote cone formation will be important for interpreting the geological record of fossil mats and stromatolites, on Earth and potentially on Mars. Here we report the results of new experiments demonstrating complex social organization of cone-forming communities and a novel biosignature of the growth of such communities on sandy sediments, as well as detection of that biosignature in 3.2 Ga fossil mats of the Moodies Group (Barberton greenstone belt, South Africa). In order to investigate the processes involved in cone formation, we grew cultures of a filamentous cyanobacterium originally isolated from tufted cones in Yellowstone National Park, Montana, U.S.A. (Leptolyngbya sp. Y-WT-2000 Cl 1). During early mat development, filaments coat sand grain surfaces and aggregate into ~100-μm-long tufts, or mutually aligned bundles of filaments. Tufts are highly motile, bridging sand grains and merging to form larger tufts. After 10-14 days of growth, tufts aggregate during the early morning into centers composed of many tufts that wave vertically and along the sand surface. Centers move across the sediment surface during the middle of the day and merge along bridging tufts. These bridges transmit force to the underlying sediment and are capable of rolling sand grains. At this stage, mats are composed of small mobile centers that disperse along streams of co

  13. O-GlcNAcylation modulates the self-aggregation ability of the fourth microtubule-binding repeat of tau

    SciTech Connect

    Yu, C.-H.; Si Tong; Wu Weihui; Hu Jia; Du Jintang; Zhao Yufen; Li Yanmei

    2008-10-10

    In Alzheimer's disease (AD), tau protein is abnormally hyperphosphorylated and aggregated into paired helical filaments (PHFs). It was discovered recently that tau is also O-GlcNAcylated in human brains. And O-GlcNAcylation may regulate phosphorylation of tau in a site-specific manner. In this work, we focused on the fourth microtubule-binding repeat (R4) of tau, which has an O-GlcNAcylation site-Ser356. The aggregation behavior of this repeat and its O-GlcNAcylated form was investigated by turbidity, precipitation assay and electron microscopy. In addition, conformations of these two peptides were analyzed with circular dichroism (CD). Our results revealed that O-GlcNAcylation at Ser356 could greatly slow down the aggregation speed of R4 peptide. This modulation of O-GlcNAcylation on tau aggregation implies a new perspective of tau pathology.

  14. Intermediate Filaments and Polarization in the Intestinal Epithelium

    PubMed Central

    Coch, Richard A.; Leube, Rudolf E.

    2016-01-01

    The cytoplasmic intermediate filament cytoskeleton provides a tissue-specific three-dimensional scaffolding with unique context-dependent organizational features. This is particularly apparent in the intestinal epithelium, in which the intermediate filament network is localized below the apical terminal web region and is anchored to the apical junction complex. This arrangement is conserved from the nematode Caenorhabditis elegans to humans. The review summarizes compositional, morphological and functional features of the polarized intermediate filament cytoskeleton in intestinal cells of nematodes and mammals. We emphasize the cross talk of intermediate filaments with the actin- and tubulin-based cytoskeleton. Possible links of the intermediate filament system to the distribution of apical membrane proteins and the cell polarity complex are highlighted. Finally, we discuss how these properties relate to the establishment and maintenance of polarity in the intestine. PMID:27429003

  15. Requirement for pantothenate for filament formation by Erwinia carotovora.

    PubMed Central

    Grula, M M; Grula, E A

    1976-01-01

    Pantothenate is required for the formation of filaments by Erwinia carotovora. This has been demonstrated for the following division-inhibiting agents: D-serine, D-cycloserine, penicillin, vancomycin, fluoride ion, and ultraviolet light. D-Serine inhibits pantothenate synthesis in an ammonia-glucose or an ammonia-pyruvate medium; therefore, it is necessary to add pantothenate to obtain filament formation in these media, using D-serine as the division-inhibiting agent. Under conditions in which pantothenate synthesis is not inhibited by the agent producing filaments, the need for it for filamentation was shown by the use of salicylate, an inhibitor of endogenous pantothenate synthesis. Evidence is presented that the production of filaments is a specific response to pantothenate, rather than a nonspecific growth stimulation. PMID:1254563

  16. Conduction in alumina with atomic scale copper filaments

    NASA Astrophysics Data System (ADS)

    Xu, Xu; Liu, Jie; Anantram, M. P.

    2014-10-01

    The conductance of atomic scale filaments with three and seven Cu atoms in α-alumina are calculated using ab initio density functional theory. We find that the filament with 3 Cu atoms is sufficient to increase the conductance of 1.3 nm thick alumina film by more than 103 times in linear response. As the applied voltage increases, the current quickly saturates and differential resistance becomes negative. Compared to the filament with three Cu atoms, while the conductance of the filament with seven Cu atoms is comparable in linear response, they carry as much as twenty times larger current at large biases. The electron transport is analyzed based on local density of states, and the negative differential resistance in the seven Cu filaments occurs due to their narrow bandwidth.

  17. Ubiquitination and filamentous structure of cytidine triphosphate synthase

    PubMed Central

    Pai, Li-Mei; Wang, Pei-Yu; Lin, Wei-Cheng; Chakraborty, Archan; Yeh, Chau-Ting; Lin, Yu-Hung

    2016-01-01

    ABSTRACT Living organisms respond to nutrient availability by regulating the activity of metabolic enzymes. Therefore, the reversible post-translational modification of an enzyme is a common regulatory mechanism for energy conservation. Recently, cytidine-5′-triphosphate (CTP) synthase was discovered to form a filamentous structure that is evolutionarily conserved from flies to humans. Interestingly, induction of the formation of CTP synthase filament is responsive to starvation or glutamine depletion. However, the biological roles of this structure remain elusive. We have recently shown that ubiquitination regulates CTP synthase activity by promoting filament formation in Drosophila ovaries during endocycles. Intriguingly, although the ubiquitination process was required for filament formation induced by glutamine depletion, CTP synthase ubiquitination was found to be inversely correlated with filament formation in Drosophila and human cell lines. In this article, we discuss the putative dual roles of ubiquitination, as well as its physiological implications, in the regulation of CTP synthase structure. PMID:27116391

  18. Filament capturing with the multimaterial moment-of-fluid method*

    SciTech Connect

    Jemison, Matthew; Sussman, Mark; Shashkov, Mikhail

    2015-01-15

    A novel method for capturing two-dimensional, thin, under-resolved material configurations, known as “filaments,” is presented in the context of interface reconstruction. This technique uses a partitioning procedure to detect disconnected regions of material in the advective preimage of a cell (indicative of a filament) and makes use of the existing functionality of the Multimaterial Moment-of-Fluid interface reconstruction method to accurately capture the under-resolved feature, while exactly conserving volume. An algorithm for Adaptive Mesh Refinement in the presence of filaments is developed so that refinement is introduced only near the tips of filaments and where the Moment-of-Fluid reconstruction error is still large. Comparison to the standard Moment-of-Fluid method is made. As a result, it is demonstrated that using filament capturing at a given resolution yields gains in accuracy comparable to introducing an additional level of mesh refinement at significantly lower cost.

  19. Propagation of radio frequency waves through density filaments

    NASA Astrophysics Data System (ADS)

    Ram, Abhay K.; Hizanidis, Kyriakos

    2015-12-01

    In tokamak fusion plasmas, coherent fluctuations in the form of blobs or filaments are routinely observed in the scrape-off layer. In this paper we develop an analytical formalism for the scattering of radio frequency waves by filaments which are cylindrical with their major axis aligned along the toroidal magnetic field lines. Since the magnitude of the ratio of the density inside the filaments to the background density is generally of order 1, the geometric optics approximation cannot be used to describe the scattering. A full-wave model is formulated which assumes that the plasma is cold and that the plasma in the cylindrical filament has uniform density. The background plasma, in which the filament is present, is also assumed to be cold and uniform. The theoretical framework applies to the scattering of any plasma wave.

  20. Propagation of radio frequency waves through density filaments

    SciTech Connect

    Ram, Abhay K.; Hizanidis, Kyriakos

    2015-12-10

    In tokamak fusion plasmas, coherent fluctuations in the form of blobs or filaments are routinely observed in the scrape-off layer. In this paper we develop an analytical formalism for the scattering of radio frequency waves by filaments which are cylindrical with their major axis aligned along the toroidal magnetic field lines. Since the magnitude of the ratio of the density inside the filaments to the background density is generally of order 1, the geometric optics approximation cannot be used to describe the scattering. A full-wave model is formulated which assumes that the plasma is cold and that the plasma in the cylindrical filament has uniform density. The background plasma, in which the filament is present, is also assumed to be cold and uniform. The theoretical framework applies to the scattering of any plasma wave.

  1. Beam wandering of femtosecond laser filament in air.

    PubMed

    Yang, Jing; Zeng, Tao; Lin, Lie; Liu, Weiwei

    2015-10-01

    The spatial wandering of a femtosecond laser filament caused by the filament heating effect in air has been studied. An empirical formula has also been derived from the classical Karman turbulence model, which determines quantitatively the displacement of the beam center as a function of the propagation distance and the effective turbulence structure constant. After fitting the experimental data with this formula, the effective turbulence structure constant has been estimated for a single filament generated in laboratory environment. With this result, one may be able to estimate quantitatively the displacement of a filament over long distance propagation and interpret the practical performance of the experiments assisted by femtosecond laser filamentation, such as remote air lasing, pulse compression, high order harmonic generation (HHG), etc.

  2. Conduction in alumina with atomic scale copper filaments

    SciTech Connect

    Xu, Xu; Liu, Jie; Anantram, M. P.

    2014-10-28

    The conductance of atomic scale filaments with three and seven Cu atoms in α-alumina are calculated using ab initio density functional theory. We find that the filament with 3 Cu atoms is sufficient to increase the conductance of 1.3 nm thick alumina film by more than 10{sup 3} times in linear response. As the applied voltage increases, the current quickly saturates and differential resistance becomes negative. Compared to the filament with three Cu atoms, while the conductance of the filament with seven Cu atoms is comparable in linear response, they carry as much as twenty times larger current at large biases. The electron transport is analyzed based on local density of states, and the negative differential resistance in the seven Cu filaments occurs due to their narrow bandwidth.

  3. Magnetic reconnection between a solar filament and nearby coronal loops

    NASA Astrophysics Data System (ADS)

    Li, Leping; Zhang, Jun; Peter, Hardi; Priest, Eric; Chen, Huadong; Guo, Lijia; Chen, Feng; Mackay, Duncan

    2016-09-01

    Magnetic reconnection is difficult to observe directly but coronal structures on the Sun often betray the magnetic field geometry and its evolution. Here we report the observation of magnetic reconnection between an erupting filament and its nearby coronal loops, resulting in changes in the filament connection. X-type structures form when the erupting filament encounters the loops. The filament becomes straight, and bright current sheets form at the interfaces. Plasmoids appear in these current sheets and propagate bi-directionally. The filament disconnects from the current sheets, which gradually disperse and disappear, then reconnects to the loops. This evolution suggests successive magnetic reconnection events predicted by theory but rarely detected with such clarity in observations. Our results confirm the three-dimensional magnetic reconnection theory and have implications for the evolution of dissipation regions and the release of magnetic energy for reconnection in many magnetized plasma systems.

  4. Persistent nuclear actin filaments inhibit transcription by RNA polymerase II.

    PubMed

    Serebryannyy, Leonid A; Parilla, Megan; Annibale, Paolo; Cruz, Christina M; Laster, Kyle; Gratton, Enrico; Kudryashov, Dmitri; Kosak, Steven T; Gottardi, Cara J; de Lanerolle, Primal

    2016-09-15

    Actin is abundant in the nucleus and it is clear that nuclear actin has important functions. However, mystery surrounds the absence of classical actin filaments in the nucleus. To address this question, we investigated how polymerizing nuclear actin into persistent nuclear actin filaments affected transcription by RNA polymerase II. Nuclear filaments impaired nuclear actin dynamics by polymerizing and sequestering nuclear actin. Polymerizing actin into stable nuclear filaments disrupted the interaction of actin with RNA polymerase II and correlated with impaired RNA polymerase II localization, dynamics, gene recruitment, and reduced global transcription and cell proliferation. Polymerizing and crosslinking nuclear actin in vitro similarly disrupted the actin-RNA-polymerase-II interaction and inhibited transcription. These data rationalize the general absence of stable actin filaments in mammalian somatic nuclei. They also suggest a dynamic pool of nuclear actin is required for the proper localization and activity of RNA polymerase II.

  5. Filament capturing with the Multimaterial Moment-of-Fluid method

    SciTech Connect

    Jemison, Matthew; Sussman, Mark; Shashkov, Mikhail

    2015-03-15

    A novel method for capturing two-dimensional, thin, under-resolved material configurations, known as “filaments,” is presented in the context of interface reconstruction. This technique uses a partitioning procedure to detect disconnected regions of material in the advective preimage of a cell (indicative of a filament) and makes use of the existing functionality of the Multimaterial Moment-of-Fluid interface reconstruction method to accurately capture the under-resolved feature, while exactly conserving volume. An algorithm for Adaptive Mesh Refinement in the presence of filaments is developed so that refinement is introduced only near the tips of filaments and where the Moment-of-Fluid reconstruction error is still large. Comparison to the standard Moment-of-Fluid method is made. It is demonstrated that using filament capturing at a given resolution yields gains in accuracy comparable to introducing an additional level of mesh refinement at significantly lower cost.

  6. The extreme nonlinear optics of gases and femtosecond optical filamentation

    SciTech Connect

    Milchberg, H. M.; Chen, Y.-H.; Cheng, Y.-H.; Jhajj, N.; Palastro, J. P.; Rosenthal, E. W.; Varma, S.; Wahlstrand, J. K.; Zahedpour, S.

    2014-10-15

    Under certain conditions, powerful ultrashort laser pulses can form greatly extended, propagating filaments of concentrated high intensity in gases, leaving behind a very long trail of plasma. Such filaments can be much longer than the longitudinal scale over which a laser beam typically diverges by diffraction, with possible applications ranging from laser-guided electrical discharges to high power laser propagation in the atmosphere. Understanding in detail the microscopic processes leading to filamentation requires ultrafast measurements of the strong field nonlinear response of gas phase atoms and molecules, including absolute measurements of nonlinear laser-induced polarization and high field ionization. Such measurements enable the assessment of filamentation models and make possible the design of experiments pursuing applications. In this paper, we review filamentation in gases and some applications, and discuss results from diagnostics developed at Maryland for ultrafast measurements of laser-gas interactions.

  7. Beam wandering of femtosecond laser filament in air.

    PubMed

    Yang, Jing; Zeng, Tao; Lin, Lie; Liu, Weiwei

    2015-10-01

    The spatial wandering of a femtosecond laser filament caused by the filament heating effect in air has been studied. An empirical formula has also been derived from the classical Karman turbulence model, which determines quantitatively the displacement of the beam center as a function of the propagation distance and the effective turbulence structure constant. After fitting the experimental data with this formula, the effective turbulence structure constant has been estimated for a single filament generated in laboratory environment. With this result, one may be able to estimate quantitatively the displacement of a filament over long distance propagation and interpret the practical performance of the experiments assisted by femtosecond laser filamentation, such as remote air lasing, pulse compression, high order harmonic generation (HHG), etc. PMID:26480079

  8. Crystal aggregation in kidney stones; a polymer aggregation problem?

    NASA Astrophysics Data System (ADS)

    Wesson, J.; Beshensky, A.; Viswanathan, P.; Zachowicz, W.; Kleinman, J.

    2008-03-01

    Kidney stones most frequently form as aggregates of calcium oxalate monohydrate (COM) crystals with organic layers between them, and the organic layers contain principally proteins. The pathway leading to the formation of these crystal aggregates in affected people has not been identified, but stone forming patients are thought to have a defect in the structure or distribution of urinary proteins, which normally protect against stone formation. We have developed two polyelectrolyte models that will induce COM crystal aggregation in vitro, and both are consistent with possible urinary protein compositions. The first model was based on mixing polyanionic and polycationic proteins, in portions such that the combined protein charge is near zero. The second model was based on reducing the charge density on partially charged polyanionic proteins, specifically Tamm-Horsfall protein, the second most abundant protein in urine. Both models demonstrated polymer phase separation at solution conditions where COM crystal aggregation was observed. Correlation with data from other bulk crystallization measurements suggest that the anionic side chains form critical binding interactions with COM surfaces that are necessary along with the phase separation process to induce COM crystal aggregation.

  9. Cryogenic glass-filament-wound tank evaluation

    NASA Technical Reports Server (NTRS)

    Morris, E. E.; Landes, R. E.

    1971-01-01

    High-pressure glass-filament-wound fluid storage vessels with thin aluminum liners were designed, fabricated, and tested at ambient and cryogenic temperatures which demonstrated the feasibility of producing such vessels as well as high performance and light weight. Significant developments and advancements were made in solving problems associated with the thin metal liners in the tanks, including liner bonding to the overwrap and high strain magnification at the vessel polar bosses. The vessels had very high burst strengths, and failed in cyclic fatigue tests by local liner fracture and leakage without structural failure of the composite tank wall. The weight of the tanks was only 40 to 55% of comparable 2219-T87 aluminum and Inconel 718 tanks.

  10. Filament wound data base development, revision 1

    NASA Technical Reports Server (NTRS)

    Sharp, R. Scott; Braddock, William F.

    1985-01-01

    The objective was to update the present Space Shuttle Solid Rocket Booster (SRB) baseline reentry aerodynamic data base and to develop a new reentry data base for the filament wound case SRB along with individual protuberance increments. Lockheed's procedures for performing these tasks are discussed. Free fall of the SRBs after separation from the Space Shuttle Launch Vehicle is completely uncontrolled. However, the SRBs must decelerate to a velocity and attitude that is suitable for parachute deployment. To determine the SRB reentry trajectory parameters, including the rate of deceleration and attitude history during free-fall, engineers at Marshall Space Flight Center are using a six-degree-of-freedom computer program to predict dynamic behavior. Static stability aerodynamic coefficients are part of the information required for input into this computer program. Lockheed analyzed the existing reentry aerodynamic data tape (Data Tape 5) for the current steel case SRB. This analysis resulted in the development of Data Tape 7.

  11. Networking galore: intermediate filaments and cell migration.

    PubMed

    Chung, Byung-Min; Rotty, Jeremy D; Coulombe, Pierre A

    2013-10-01

    Intermediate filaments (IFs) are assembled from a diverse group of evolutionarily conserved proteins and are specified in a tissue-dependent, cell type-dependent, and context-dependent fashion in the body. IFs are involved in multiple cellular processes that are crucial for the maintenance of cell and tissue integrity and the response and adaptation to various stresses, as conveyed by the broad array of crippling clinical disorders caused by inherited mutations in IF coding sequences. Accordingly, the expression, assembly, and organization of IFs are tightly regulated. Migration is a fitting example of a cell-based phenomenon in which IFs participate as both effectors and regulators. With a particular focus on vimentin and keratin, we here review how the contributions of IFs to the cell's mechanical properties, to cytoarchitecture and adhesion, and to regulatory pathways collectively exert a significant impact on cell migration.

  12. Geometric control of vimentin intermediate filaments.

    PubMed

    Shabbir, Shagufta H; Cleland, Megan M; Goldman, Robert D; Mrksich, Milan

    2014-02-01

    Significant efforts have addressed the role of vimentin intermediate filaments (VIF) in cell motility, shape, adhesion and their connections to microfilaments (MF) and microtubules (MT). The present work uses micropatterned substrates to control the shapes of mouse fibroblasts and demonstrates that the cytoskeletal elements are dependent on each other and that unlike MF, VIF are globally controlled. For example, both square and circle shaped cells have a similar VIF distribution while MF distributions in these two shapes are quite different and depend on the curvature of the shape. Furthermore, in asymmetric and polarized shaped cells VIF avoid the sharp edges where MF are highly localized. Experiments with vimentin null mouse embryonic fibroblasts (MEFs) adherent to polarized (teardrop) and un-polarized (dumbbell) patterns show that the absence of VIF alters microtubule organization and perturbs cell polarity. The results of this study also demonstrate the utility of patterned substrates for quantitative studies of cytoskeleton organization in adherent cells.

  13. Hamiltonian Dynamics of Protein Filament Formation.

    PubMed

    Michaels, Thomas C T; Cohen, Samuel I A; Vendruscolo, Michele; Dobson, Christopher M; Knowles, Tuomas P J

    2016-01-22

    We establish the Hamiltonian structure of the rate equations describing the formation of protein filaments. We then show that this formalism provides a unified view of the behavior of a range of biological self-assembling systems as diverse as actin, prions, and amyloidogenic polypeptides. We further demonstrate that the time-translation symmetry of the resulting Hamiltonian leads to previously unsuggested conservation laws that connect the number and mass concentrations of fibrils and allow linear growth phenomena to be equated with autocatalytic growth processes. We finally show how these results reveal simple rate laws that provide the basis for interpreting experimental data in terms of specific mechanisms controlling the proliferation of fibrils. PMID:26849615

  14. Structural transitions in tau k18 on micelle binding suggest a hierarchy in the efficacy of individual microtubule-binding repeats in filament nucleation.

    PubMed

    Barré, Patrick; Eliezer, David

    2013-08-01

    The protein tau is found in an aggregated filamentous state in the intraneuronal paired helical filament deposits characteristic of Alzheimer's disease and other related dementias and mutations in tau protein and mRNA cause frontotemproal dementia. Tau isoforms include a microtubule-binding domain containing either three or four imperfect tandem microtubule binding repeats that also form the core of tau filaments and contain hexapaptide motifs that are critical for tau aggregation. The tau microtubule-binding domain can also engage in direct interactions with detergents, fatty acids, or membranes, which can greatly facilitate tau aggregation and may also mediate some tau functions. Here, we show that the alternatively spliced second microtubule-binding repeat exhibits significantly different structural characteristics compared with the other three repeats in the context of the intact repeat domain. Most notably, the PHF6* hexapeptide motif located at the N-terminus of repeat 2 has a lower propensity to form strand-like structure than the corresponding PHF6 motif in repeat 3, and unlike PHF6 converts to partially helical structure in the micelle-bound state. Interestingly, the behavior of the Module-B motif, located at the beginning of repeat 4, resembles that of PHF6* rather than PHF6. Our observations, combined with previous results showing that PHF6* and Module-B are both less effective than PHF6 in nucleating tau aggregation, suggest a hierarchy in the efficacy of these motifs in nucleating tau aggregation that originates in differences in their intrinsic propensities for extended strand-like structure and the resistance of these propensities to changes in tau's environment.

  15. Radiation Spectral Synthesis of Relativistic Filamentation

    NASA Astrophysics Data System (ADS)

    Frederiksen, Jacob Trier; Haugbølle, Troels; Medvedev, Mikhail V.; Nordlund, Åke

    2010-10-01

    Radiation from many astrophysical sources, e.g., gamma-ray bursts and active galactic nuclei, is believed to arise from relativistically shocked collisionless plasmas. Such sources often exhibit highly transient spectra evolving rapidly compared with source lifetimes. Radiation emitted from these sources is typically associated with nonlinear plasma physics, complex field topologies, and non-thermal particle distributions. In such circumstances, a standard synchrotron paradigm may fail to produce accurate conclusions regarding the underlying physics. Simulating spectral emission and spectral evolution numerically in various relativistic shock scenarios is then the only viable method to determine the detailed physical origin of the emitted spectra. In this Letter, we present synthetic radiation spectra representing the early stage development of the filamentation (streaming) instability of an initially unmagnetized plasma, which is relevant for both collisionless shock formation and reconnection dynamics in relativistic astrophysical outflows as well as for laboratory astrophysics experiments. Results were obtained using a highly efficient in situ diagnostics method, based on detailed particle-in-cell modeling of collisionless plasmas. The synthetic spectra obtained here are compared with those predicted by a semi-analytical model for jitter radiation from the filamentation instability, the latter including self-consistent generated field topologies and particle distributions obtained from the simulations reported upon here. Spectra exhibit dependence on the presence—or the absence—of an inert plasma constituent, when comparing baryonic plasmas (i.e., containing protons) with pair plasmas. The results also illustrate that considerable care should be taken when using lower-dimensional models to obtain information about the astrophysical phenomena generating observed spectra.

  16. A universal filament width? The effect of ambipolar diffusion on the size distribution of dense filaments.

    NASA Astrophysics Data System (ADS)

    Ntormousi, Evangelia; Hennebelle, Patrick; André, Philippe

    2015-08-01

    The filamentary structure of molecular clouds and its potential link to star formation have been brought into focus by Herschel's high resolution observations of the local Interstellar Medium. An especially puzzling result from the same surveys is that local interstellar filaments have a preferred thickness of 0.1 pc, independent of their column density. What can be the origin of this apparently universal property?Filamentary structure is characteristic of MHD turbulence, appearing as a result of shear, magnetic tension and shocks. If the observed filaments are indeed the dissipative structures of interstellar turbulence, then ambipolar diffusion is the best candidate for setting a characteristic thickness by damping MHD waves. We test this hyporthesis with high-resolution, 3D MHD simulations performed with the AMR code RAMSES. To avoid confusion with grid effects, our simulations reach a physical resolution of 200 AU, resolving the observed 0.1 pc with about 100 cells.These simulations of both driven and decaying MHD turbulence show that the fluid assumes a different morphology when ambipolar diffusion is included in the models: ion-neutral friction acts on a characteristic scale to cut off the cascade, broadening the dense structures and flattening their mass spectra with respect to the corresponding ideal MHD situation. Altough the peak in the thickness distribution of filaments is not as dramatic in this series of simulations as in the observations, the comparison between ideal and non-ideal MHD points to ion-neutral friction as a very good candidate for setting a characteristic scale for interstellar filaments.

  17. The intermediate-sized filaments in rat kangaroo PtK2 cells. II. Structure and composition of isolated filaments.

    PubMed

    Franke, W W; Schmid, E; Osborn, M; Weber, K

    1978-08-01

    When cultured cells of the rat kangaroo cell line PtK2 grown on plastic or glass surfaces are lysed and extracted with combinations of low and high salt buffers and the non-ionic detergent Triton X-100 cytoskeletal preparations are obtained that show an enrichment of 6 to 11 nm thick filaments. The arrays of these filaments have been examined by various light and electron microscopic techniques, including ultrathin sectioning, whole mount transmission electron microscopy, negative staining, and indirect immunofluorescence microscopy. In addition, 6 to 11 nm filaments isolated from these cells with similar extraction procedures and with centrifugation techniques have been examined by electron microscopy. The arrays of these isolated intermediate-sized filaments, their ultrastructure and their specific decoration by certain antibodies present in normal rabbit sera as well as by guinea pig antibodies against purified bovine prekeratin is demonstrated. When preparations enriched in these intermediate-sized filaments are examined by SDS-polyacrylamide gel electrophoresis a corresponding enrichment of three polypeptide bands with apparent molecular weights of about 45 000, 52 000 and 58 000 (the latter component sometimes appears split into two bands) is observed, besides some residual actin and a few high molecular weight bands. The morphology of the isolated filaments, their immunological reaction with antibodies decorating prekeratin-containing structures, and the sizes of their constitutive polypeptides suggest that these filaments are closely related to prekeratin-containing filaments observed in a variety of epithelial cells.

  18. Polyalanine and Abeta Aggregation Kinetics: Probing Intermediate Oligomer Formation and Structure Using Computer Simulations

    NASA Astrophysics Data System (ADS)

    Phelps, Erin Melissa

    2011-12-01

    The aggregation of proteins into stable, well-ordered structures known as amyloid fibrils has been associated with many neurodegenerative diseases. Amyloid fibrils are long straight, and un-branched structures containing several proto-filaments, each of which exhibits "cross beta structure," -- ribbon-like layers of large beta sheets whose strands run perpendicular to the fibril axis. It has been suggested in the literature that the pathway to fibril formation has the following steps: unfolded monomers associate into transient unstable oligomers, the oligomers undergo a rearrangement into the cross-beta structure and form into proto-filaments, these proto-filaments then associate and grow into fully formed fibrils. Recent experimental studies have determined that the unstable intermediate structures are toxic to cells and that their presence may play a key role in the pathogenesis of the amyloid diseases. Many efforts have been made to determine the structure of intermediate oligomer aggregates that form during the fibrillization process. The goal of this work is to provide details about the structure and formation kinetics of the unstable oligomers that appear in the fibril formation pathway. The specific aims of this work are to determine the steps in the fibril formation pathway and how the kinetics of fibrillization changes with variations in temperature and concentration. The method used is the application of discontinuous molecular dynamics to large systems of peptides represented with an intermediate resolution model, PRIME, that was previously developed in our group. Three different peptide sequences are simulated: polyalanine (KA14K), Abeta17-40, and Abeta17-42; the latter two are truncated sequences of the Alzheimer's peptide. We simulate the spontaneous assembly of these peptide chains from a random initial configuration of random coils. We investigate aggregation kinetics and oligomer formation of a system of 192 polyalanine (KA14K) chains over a

  19. Development of a process for producing ribbon shaped filaments. [production of silicon carbide filaments

    NASA Technical Reports Server (NTRS)

    Debolt, H. E.; Krukonis, V. J.

    1973-01-01

    Silicon carbide (SiC) ribbon filaments were produced on a carbon ribbon substrate, about 1500 microns (60 mils) wide and 100 microns (4 mils) thick in lengths up to 2 meters (6 ft), and with tensile strengths up to 142 KN/cm sq (206 Ksi). During the course of the study, ribbon filaments of boron were also produced on the carbon ribbon substrate; the boron ribbon produced was extremely fragile. The tensile strength of the SiC ribbon was limited by large growths or flaws caused by anomalies at the substrate surface; these anomalies were either foreign dirt or substrate imperfections or both. Related work carried out on round 100 micron (4 mils) diameter SiC filaments on a 33 micron (1.3 mil) diameter, very smooth carbon monofilament substrate has shown that tensile strengths as high as 551 KN/cm sq (800 Ksi) are obtainable with the SiC-carbon round substrate combination, and indicates that if the ribbon substrate surface and ribbon deposition process can be improved similar strengths can be realizable. Cost analysis shows that 100 micron x 5-10 micron SiC ribbon can be very low cost reinforcement material.

  20. Acidianus filamentous virus 1 coat proteins display a helical fold spanning the filamentous archaeal viruses lineage

    PubMed Central

    Goulet, Adeline; Blangy, Stéphanie; Redder, Peter; Prangishvili, David; Felisberto-Rodrigues, Catarina; Forterre, Patrick; Campanacci, Valérie; Cambillau, Christian

    2009-01-01

    Acidianus filamentous virus 1 (AFV1), a member of the Lipothrixviridae family, infects the hyperthermophilic, acidophilic crenarchaeaon Acidianus hospitalis. The virion, covered with a lipidic outer shell, is 9,100-Å long and contains a 20.8-kb linear dsDNA genome. We have identified the two major coat proteins of the virion (MCPs; 132 and 140 amino acids). They bind DNA and form filaments when incubated with linear dsDNA. A C-terminal domain is identified in their crystal structure with a four-helix-bundle fold. In the topological model of the virion filament core, the genomic dsDNA superhelix wraps around the AFV1–132 basic protein, and the AFV1–140 basic N terminus binds genomic DNA, while its lipophilic C-terminal domain is imbedded in the lipidic outer shell. The four-helix bundle fold of the MCPs from AFV1 is identical to that of the coat protein (CP) of Sulfolobus islandicus rod-shaped virus (SIRV), a member of the Rudiviridae family. Despite low sequence identity between these proteins, their high degree of structural similarity suggests that they could have derived from a common ancestor and could thus define an yet undescribed viral lineage. PMID:19934032

  1. Self-folding and aggregation of amyloid nanofibrils

    NASA Astrophysics Data System (ADS)

    Paparcone, Raffaella; Cranford, Steven W.; Buehler, Markus J.

    2011-04-01

    Amyloids are highly organized protein filaments, rich in β-sheet secondary structures that self-assemble to form dense plaques in brain tissues affected by severe neurodegenerative disorders (e.g. Alzheimer's Disease). Identified as natural functional materials in bacteria, in addition to their remarkable mechanical properties, amyloids have also been proposed as a platform for novel biomaterials in nanotechnology applications including nanowires, liquid crystals, scaffolds and thin films. Despite recent progress in understanding amyloid structure and behavior, the latent self-assembly mechanism and the underlying adhesion forces that drive the aggregation process remain poorly understood. On the basis of previous full atomistic simulations, here we report a simple coarse-grain model to analyze the competition between adhesive forces and elastic deformation of amyloid fibrils. We use simple model system to investigate self-assembly mechanisms of fibrils, focused on the formation of self-folded nanorackets and nanorings, and thereby address a critical issue in linking the biochemical (Angstrom) to micrometre scales relevant for larger-scale states of functional amyloid materials. We investigate the effect of varying the interfibril adhesion energy on the structure and stability of self-folded nanorackets and nanorings and demonstrate that these aggregated amyloid fibrils are stable in such states even when the fibril-fibril interaction is relatively weak, given that the constituting amyloid fibril length exceeds a critical fibril length-scale of several hundred nanometres. We further present a simple approach to directly determine the interfibril adhesion strength from geometric measures. In addition to providing insight into the physics of aggregation of amyloid fibrils our model enables the analysis of large-scale amyloid plaques and presents a new method for the estimation and engineering of the adhesive forces responsible of the self-assembly process of

  2. Kelch Domain of Gigaxonin Interacts with Intermediate Filament Proteins Affected in Giant Axonal Neuropathy

    PubMed Central

    Johnson-Kerner, Bethany L.; Garcia Diaz, Alejandro; Ekins, Sean; Wichterle, Hynek

    2015-01-01

    Patients with giant axonal neuropathy (GAN) show progressive loss of motor and sensory function starting in childhood and typically live for less than 30 years. GAN is caused by autosomal recessive mutations leading to low levels of gigaxonin (GIG), a ubiquitously-expressed BTB/Kelch cytoplasmic protein believed to be an E3 ligase substrate adaptor. GAN pathology is characterized by aggregates of intermediate filaments (IFs) in multiple tissues. To delineate the molecular pathway between GIG deficiency and IF pathology, we undertook a proteomic screen to identify the normal binding partners of GIG. Prominent among them were several classes of IFs, including the neurofilament subunits whose accumulation leads to the axonal swellings for which GAN is named. We showed these interactions were dependent on the Kelch domain of GIG. Furthermore, we identified the E3 ligase MYCBP2 and the heat shock proteins HSP90AA1/AB1 as interactors with the BTB domain that may result in the ubiquitination and subsequent degradation of intermediate filaments. Our open-ended proteomic screen provides support to GIG’s role as an adaptor protein, linking IF proteins through its Kelch domain to the ubiquitin pathway proteins via its BTB domain, and points to future approaches for reversing the phenotype in human patients. PMID:26460568

  3. Fractal Aggregates in Tennis Ball Systems

    ERIC Educational Resources Information Center

    Sabin, J.; Bandin, M.; Prieto, G.; Sarmiento, F.

    2009-01-01

    We present a new practical exercise to explain the mechanisms of aggregation of some colloids which are otherwise not easy to understand. We have used tennis balls to simulate, in a visual way, the aggregation of colloids under reaction-limited colloid aggregation (RLCA) and diffusion-limited colloid aggregation (DLCA) regimes. We have used the…

  4. Aggregated Recommendation through Random Forests

    PubMed Central

    2014-01-01

    Aggregated recommendation refers to the process of suggesting one kind of items to a group of users. Compared to user-oriented or item-oriented approaches, it is more general and, therefore, more appropriate for cold-start recommendation. In this paper, we propose a random forest approach to create aggregated recommender systems. The approach is used to predict the rating of a group of users to a kind of items. In the preprocessing stage, we merge user, item, and rating information to construct an aggregated decision table, where rating information serves as the decision attribute. We also model the data conversion process corresponding to the new user, new item, and both new problems. In the training stage, a forest is built for the aggregated training set, where each leaf is assigned a distribution of discrete rating. In the testing stage, we present four predicting approaches to compute evaluation values based on the distribution of each tree. Experiments results on the well-known MovieLens dataset show that the aggregated approach maintains an acceptable level of accuracy. PMID:25180204

  5. Novel insights into amylin aggregation

    PubMed Central

    Pillay, Karen; Govender, Patrick

    2014-01-01

    Amylin is a peptide that aggregates into species that are toxic to pancreatic beta cells, leading to type II diabetes. This study has for the first time quantified amylin association and dissociation kinetics (association constant (ka) = 28.7 ± 5.1 L mol−1 s−1 and dissociation constant (kd) = 2.8 ± 0.6 ×10−4 s−1) using surface plasmon resonance (SPR). Thus far, techniques used for the sizing of amylin aggregates do not cater for the real-time monitoring of unconstrained amylin in solution. In this regard we evaluated recently innovated nanoparticle tracking analysis (NTA). In addition, both SPR and NTA were used to study the effect of previously synthesized amylin derivatives on amylin aggregation and to evaluate their potential as a cell-free system for screening potential inhibitors of amylin-mediated cytotoxicity. Results obtained from NTA highlighted a predominance of 100–300 nm amylin aggregates and correlation to previously published cytotoxicity results suggests the toxic species of amylin to be 200–300 nm in size. The results seem to indicate that NTA has potential as a new technique to monitor the aggregation potential of amyloid peptides in solution and also to screen potential inhibitors of amylin-mediated cytotoxicity. PMID:26019498

  6. Identification of key amino acids responsible for the distinct aggregation properties of microtubule-associated protein 2 and tau.

    PubMed

    Xie, Ce; Soeda, Yoshiyuki; Shinzaki, Yuki; In, Yasuko; Tomoo, Koji; Ihara, Yasuo; Miyasaka, Tomohiro

    2015-10-01

    The carboxyl-terminal sequence of tau composes the framework for its intracellular inclusions that appear in diverse neurodegenerative disorders known as tauopathies. However, microtubule-associated protein 2 (MAP2), which contains a homologous carboxyl-terminal sequence of tau, is undetectable in the mature tau inclusions. The mechanisms underlying this phenomenon have remained largely unknown. Here, we show that tau and MAP2 have different aggregation properties: tau aggregates to form filaments but MAP2 remains to be granules. Exchanging (221) YKPV(224) of tau (0N3R) near the PHF6 motif for (340) TKKI(343) of MAP2c profoundly changed aggregation properties, suggesting that the YKPV motif is important for filament formation, whereas the TKKI motif is for granule formation. Thus, these minimal sequences may determine the different fates of tau and MAP2 in the formation of inclusions in tauopathies. Tau and microtubule-associated protein 2 (MAP2) are homologous microtubule-associated proteins in neurons. So far, it is largely unknown why tau but not MAP2 is selectively involved in the filamentous inclusions (neurofibrillary tangles, NFT) formation in tauopathies, including Alzheimer's disease. In this study, we found that the difference of only two amino acids in tau and MAP2 sequences may determine their different fates in tauopathies. These results may lead to the elucidation of tau deregulation in pathological conditions.

  7. Equilibrium structure of ferrofluid aggregates

    SciTech Connect

    Yoon, Mina; Tomanek, David

    2010-01-01

    We study the equilibrium structure of large but finite aggregates of magnetic dipoles, representing a colloidal suspension of magnetite particles in a ferrofluid. With increasing system size, the structural motif evolves from chains and rings to multi-chain and multi-ring assemblies. Very large systems form single- and multi-wall coils, tubes and scrolls. These structural changes result from a competition between various energy terms, which can be approximated analytically within a continuum model. We also study the effect of external parameters such as magnetic field on the relative stability of these structures. Our results may give insight into experimental data obtained during solidification of ferrofluid aggregates at temperatures where thermal fluctuations become negligible in comparison to inter-particle interactions. These data may also help to experimentally control the aggregation of magnetic particles.

  8. Customer Aggregation: An Opportunity for Green Power?

    SciTech Connect

    Holt, E.; Bird, L.

    2001-02-26

    We undertook research into the experience of aggregation groups to determine whether customer aggregation offers an opportunity to bring green power choices to more customers. The objectives of this report, therefore, are to (1) identify the different types of aggregation that are occurring today, (2) learn whether aggregation offers an opportunity to advance sales of green power, and (3) share these concepts and approaches with potential aggregators and green power advocates.

  9. Fractal aggregates in tennis ball systems

    NASA Astrophysics Data System (ADS)

    Sabin, J.; Bandín, M.; Prieto, G.; Sarmiento, F.

    2009-09-01

    We present a new practical exercise to explain the mechanisms of aggregation of some colloids which are otherwise not easy to understand. We have used tennis balls to simulate, in a visual way, the aggregation of colloids under reaction-limited colloid aggregation (RLCA) and diffusion-limited colloid aggregation (DLCA) regimes. We have used the images of the cluster of balls, following Forrest and Witten's pioneering studies on the aggregation of smoke particles, to estimate their fractal dimension.

  10. The supramolecular organization of the C. elegans nuclear lamin filament.

    PubMed

    Ben-Harush, Kfir; Wiesel, Naama; Frenkiel-Krispin, Daphna; Moeller, Dorothee; Soreq, Eyal; Aebi, Ueli; Herrmann, Harald; Gruenbaum, Yosef; Medalia, Ohad

    2009-03-13

    Nuclear lamins are involved in most nuclear activities and are essential for retaining the mechano-elastic properties of the nucleus. They are nuclear intermediate filament (IF) proteins forming a distinct meshwork-like layer adhering to the inner nuclear membrane, called the nuclear lamina. Here, we present for the first time, the three-dimensional supramolecular organization of lamin 10 nm filaments and paracrystalline fibres. We show that Caenorhabditis elegans nuclear lamin forms 10 nm IF-like filaments, which are distinct from their cytoplasmic counterparts. The IF-like lamin filaments are composed of three and four tetrameric protofilaments, each of which contains two partially staggered anti-parallel head-to-tail polymers. The beaded appearance of the lamin filaments stems from paired globular tail domains, which are spaced regularly, alternating between 21 nm and 27 nm. A mutation in an evolutionarily conserved residue that causes Hutchison-Gilford progeria syndrome in humans alters the supramolecular structure of the lamin filaments. On the basis of our structural analysis, we propose an assembly pathway that yields the observed 10 nm IF-like lamin filaments and paracrystalline fibres. These results serve also as a platform for understanding the effect of laminopathic mutations on lamin supramolecular organization.

  11. Plethora of transitions during breakup of liquid filaments.

    PubMed

    Castrejón-Pita, José Rafael; Castrejón-Pita, Alfonso Arturo; Thete, Sumeet Suresh; Sambath, Krishnaraj; Hutchings, Ian M; Hinch, John; Lister, John R; Basaran, Osman A

    2015-04-14

    Thinning and breakup of liquid filaments are central to dripping of leaky faucets, inkjet drop formation, and raindrop fragmentation. As the filament radius decreases, curvature and capillary pressure, both inversely proportional to radius, increase and fluid is expelled with increasing velocity from the neck. As the neck radius vanishes, the governing equations become singular and the filament breaks. In slightly viscous liquids, thinning initially occurs in an inertial regime where inertial and capillary forces balance. By contrast, in highly viscous liquids, initial thinning occurs in a viscous regime where viscous and capillary forces balance. As the filament thins, viscous forces in the former case and inertial forces in the latter become important, and theory shows that the filament approaches breakup in the final inertial-viscous regime where all three forces balance. However, previous simulations and experiments reveal that transition from an initial to the final regime either occurs at a value of filament radius well below that predicted by theory or is not observed. Here, we perform new simulations and experiments, and show that a thinning filament unexpectedly passes through a number of intermediate transient regimes, thereby delaying onset of the inertial-viscous regime. The new findings have practical implications regarding formation of undesirable satellite droplets and also raise the question as to whether similar dynamical transitions arise in other free-surface flows such as coalescence that also exhibit singularities.

  12. Automated detection, characterization, and tracking of filaments from SDO data

    NASA Astrophysics Data System (ADS)

    Buchlin, Eric; Vial, Jean-Claude; Mercier, Claude

    2016-07-01

    Thanks to the cadence and continuity of AIA and HMI observations, SDO offers unique data for detecting, characterizing, and tracking solar filaments, until their eruptions, which are often associated with coronal mass ejections. Because of the requirement of short latency when aiming at space weather applications, and because of the important data volume, only an automated detection can be worked out. We present the code "FILaments, Eruptions, and Activations detected from Space" (FILEAS) that we have developed for the automated detection and tracking of filaments. Detections are based on the analysis of AIA 30.4 nm He II images and on the magnetic polarity inversion lines derived from HMI. Following the tracking of filaments as they rotate with the Sun, filament characteristics are computed and a database of filaments parameters is built. We present the algorithms and performances of the code, and we compare its results with the filaments detected in Hα and already present in the Heliophysics Events Knowledgebase. We finally discuss the possibility of using such a code to detect eruptions in real time.

  13. Effect of Tropomyosin on Formin-Bound Actin Filaments

    PubMed Central

    Ujfalusi, Zoltán; Vig, Andrea; Hild, Gábor; Nyitrai, Miklós

    2009-01-01

    Abstract Formins are conservative proteins with important roles in the regulation of the microfilament system in eukaryotic cells. Previous studies showed that the binding of formins to actin made the structure of actin filaments more flexible. Here, the effects of tropomyosin on formin-induced changes in actin filaments were investigated using fluorescence spectroscopic methods. The temperature dependence of the Förster-type resonance energy transfer showed that the formin-induced increase of flexibility of actin filaments was diminished by the binding of tropomyosin to actin. Fluorescence anisotropy decay measurements also revealed that the structure of flexible formin-bound actin filaments was stabilized by the binding of tropomyosin. The stabilizing effect reached its maximum when all binding sites on actin were occupied by tropomyosin. The effect of tropomyosin on actin filaments was independent of ionic strength, but became stronger as the magnesium concentration increased. Based on these observations, we propose that in cells there is a molecular mechanism in which tropomyosin binding to actin plays an important role in forming mechanically stable actin filaments, even in the case of formin-induced rapid filament assembly. PMID:18931257

  14. Numerical simulations of a shock-filament interaction

    NASA Astrophysics Data System (ADS)

    Pittard, J. M.; Goldsmith, K. J. A.

    2016-05-01

    We present 3D hydrodynamic adiabatic simulations of a shock interacting with a dense, elongated cloud. We compare how the nature of the interaction changes with the filament's length and its orientation to the shock, and with the shock Mach number and the density contrast of the filament. We then examine the differences with respect to 3D spherical-cloud calculations. We find significant differences in the morphology of the interaction when M = 10 and χ = 102: in many cases, three parallel rolls are formed, and spread furthermore apart with time, and periodic vortex shedding can occur off the ends of oblique filaments. Sideways-on filaments are accelerated more quickly, and initially lose mass more quickly than spherical clouds due to their greater surface area to volume ratio. However, at late stages, they lose mass more slowly, due to the reduced relative speed between the filament and the post-shock flow. The acceleration and mixing time-scales can vary by a factor of 2 as the filament orientation changes. Oblique filaments can achieve transverse velocities up to 10 per cent of the shock speed. Some aspects of our simulations are compared against experimental and numerical work on rigid cylinders.

  15. Evolving Photospheric Flux Concentrations and Filament Dynamic Changes

    NASA Astrophysics Data System (ADS)

    Schmieder, B.; Aulanier, G.; Mein, P.; López Ariste, A.

    2006-11-01

    We analyze the role of weak photospheric flux concentrations that evolve in a filament channel, in the triggering of dynamic changes in the shape of a filament. The high polarimetric sensitivity of THEMIS allowed us to detect weak flux concentrations (few Gauss) associated with the filament development. The synoptic instruments (MDI, SOLIS) even if their sensitivity is much less than THEMIS were useful to follow any subsequent strengthening of these flux concentrations after their identification in the THEMIS magnetograms. We found that (1) the northern part of the filament develops an Hα barb at the same time that weak minority polarity elements develop near a plage; (2) a section in the southern part of the Hα filament gradually disappears and later reforms at the same time that several mixed-polarity magnetic elements appear, then subsequently cancel or spread away from each other. These changes correspond to increases in EUV emission, as observed by TRACE, EIT, and CDS. This suggests that the plasma is temporarily heated along the filament spine. An idealized sequence of force-free models of this filament channel, based on plasma-supporting magnetic dips occurring in the windings of a very weakly twisted flux tube, naturally explains the evolution of its southern part as being due to changes in the topology of the coronal magnetic field as the photospheric flux concentrations evolve.

  16. Single Filaments to Reveal the Multiple Flavors of Actin.

    PubMed

    Jégou, Antoine; Romet-Lemonne, Guillaume

    2016-05-24

    A number of key cell processes rely on specific assemblies of actin filaments, which are all constructed from nearly identical building blocks: the abundant and extremely conserved actin protein. A central question in the field is to understand how different filament networks can coexist and be regulated. Discoveries in science are often related to technical advances. Here, we focus on the ongoing single filament revolution and discuss how these techniques have greatly contributed to our understanding of actin assembly. In particular, we highlight how they have refined our understanding of the many protein-based regulatory mechanisms that modulate actin assembly. It is now becoming apparent that other factors give filaments a specific identity that determines which proteins will bind to them. We argue that single filament techniques will play an essential role in the coming years as we try to understand the many ways actin filaments can take different flavors and unveil how these flavors modulate the action of regulatory proteins. We discuss different factors known to make actin filaments distinguishable by regulatory proteins and speculate on their possible consequences.

  17. ERUPTION OF A SOLAR FILAMENT CONSISTING OF TWO THREADS

    SciTech Connect

    Bi Yi; Jiang Yunchun; Li Haidong; Hong Junchao; Zheng Ruisheng E-mail: jyc@ynao.ac.cn

    2012-10-10

    The trigger and driving mechanism for the eruption of a filament consisting of two dark threads was studied with unprecedented high cadence and resolution of He II 304 A observations made by the Atmospheric Imagining Assembly (AIA) on board the Solar Dynamics Observatory (SDO) and the observations made by the Solar Magnetic Activity Research Telescope and the Extreme Ultraviolet Imager (EUVI) telescope on board the Solar Terrestrial Relations Observatory Ahead (STEREO-A). The filament was located at the periphery of the active region NOAA 11228 and erupted on 2011 June 6. At the onset of the eruption, a turbulent filament thread was found to be heated and to elongate in stride over a second one. After it rose slowly, most interestingly, the elongating thread was driven to contact and interact with the second one, and it then erupted with its southern leg being wrapped by a newly formed thread produced by the magnetic reconnection between fields carried by the two threads. Combining the observations from STEREO-A/EUVI and SDO/AIA 304 A images, the three-dimensional shape of the axis of the filament was obtained and it was found that only the southern leg of the eruptive filament underwent rotation. We suggest that the eruption was triggered by the reconnection of the turbulent filament thread and the surrounding magnetic field, and that it was mainly driven by the kink instability of the southern leg of the eruptive filament that possessed a more twisted field introduced by the reconnection-produced thread.

  18. Structural changes accompanying phosphorylation of tarantula muscle myosin filaments

    PubMed Central

    1987-01-01

    Electron microscopy has been used to study the structural changes that occur in the myosin filaments of tarantula striated muscle when they are phosphorylated. Myosin filaments in muscle homogenates maintained in relaxing conditions (ATP, EGTA) are found to have nonphosphorylated regulatory light chains as shown by urea/glycerol gel electrophoresis and [32P]phosphate autoradiography. Negative staining reveals an ordered, helical arrangement of crossbridges in these filaments, in which the heads from axially neighboring myosin molecules appear to interact with each other. When the free Ca2+ concentration in a homogenate is raised to 10(-4) M, or when a Ca2+-insensitive myosin light chain kinase is added at low Ca2+ (10(-8) M), the regulatory light chains of myosin become rapidly phosphorylated. Phosphorylation is accompanied by potentiation of the actin activation of the myosin Mg- ATPase activity and by loss of order of the helical crossbridge arrangement characteristic of the relaxed filament. We suggest that in the relaxed state, when the regulatory light chains are not phosphorylated, the myosin heads are held down on the filament backbone by head-head interactions or by interactions of the heads with the filament backbone. Phosphorylation of the light chains may alter these interactions so that the crossbridges become more loosely associated with the filament backbone giving rise to the observed changes and facilitating crossbridge interaction with actin. PMID:2958483

  19. Plethora of transitions during breakup of liquid filaments

    PubMed Central

    Castrejón-Pita, José Rafael; Castrejón-Pita, Alfonso Arturo; Thete, Sumeet Suresh; Sambath, Krishnaraj; Hutchings, Ian M.; Hinch, John; Lister, John R.; Basaran, Osman A.

    2015-01-01

    Thinning and breakup of liquid filaments are central to dripping of leaky faucets, inkjet drop formation, and raindrop fragmentation. As the filament radius decreases, curvature and capillary pressure, both inversely proportional to radius, increase and fluid is expelled with increasing velocity from the neck. As the neck radius vanishes, the governing equations become singular and the filament breaks. In slightly viscous liquids, thinning initially occurs in an inertial regime where inertial and capillary forces balance. By contrast, in highly viscous liquids, initial thinning occurs in a viscous regime where viscous and capillary forces balance. As the filament thins, viscous forces in the former case and inertial forces in the latter become important, and theory shows that the filament approaches breakup in the final inertial–viscous regime where all three forces balance. However, previous simulations and experiments reveal that transition from an initial to the final regime either occurs at a value of filament radius well below that predicted by theory or is not observed. Here, we perform new simulations and experiments, and show that a thinning filament unexpectedly passes through a number of intermediate transient regimes, thereby delaying onset of the inertial–viscous regime. The new findings have practical implications regarding formation of undesirable satellite droplets and also raise the question as to whether similar dynamical transitions arise in other free-surface flows such as coalescence that also exhibit singularities. PMID:25825761

  20. Force Generation, Polymerization Dynamics and Nucleation of Actin Filaments

    NASA Astrophysics Data System (ADS)

    Wang, Ruizhe

    We study force generation and actin filament dynamics using stochastic and deterministic methods. First, we treat force generation of bundled actin filaments by polymerization via molecular-level stochastic simulations. In the widely-used Brownian Ratchet model, actin filaments grow freely whenever the tip-obstacle gap created by thermal fluctuation exceeds the monomer size. We name this model the Perfect Brownian Ratchet (PBR) model. In the PBR model, actin monomer diffusion is treated implicitly. We perform a series of simulations based on the PBR, in which obstacle motion is treated explicitly; in most previous studies, obstacle motion has been treated implicitly. We find that the cooperativity of filaments is generally weak in the PBR model, meaning that more filaments would grow more slowly given the same force per filament. Closed-form formulas are also developed, which match the simulation results. These portable and accurate formulas provide guidance for experiments and upper and lower bounds for theoretical analyses. We also studied a variation of the PBR, called the Diffusing Brownian Ratchet (DBR) model, in which both actin monomer and obstacle diffusion are treated explicitly. We find that the growth rate of multiple filaments is even lower, compared with that in PBR. This finding challenges the widely-accepted PBR assumption and suggests that pushing the study of actin dynamics down to the sub-nanometer level yields new insights. We subsequently used a rate equation approach to model the effect of local depletion of actin monomers on the nucleation of actin filaments on biomimetic beads, and how the effect is regulated by capping protein (CP). We find that near the bead surface, a higher CP concentration increases local actin concentration, which leads to an enhanced activities of actin filaments' nucleation. Our model analysis matches the experimental results and lends support to an important but undervalued hypothesis proposed by Carlier and

  1. A study of short wave instability on vortex filaments

    SciTech Connect

    Wang, Hong Yun

    1996-12-01

    The numerical stability and accuracy of the vortex method are studied. The effect of the ordinary differential equations (ODE) solver and of the time step on the numerical stability is analyzed. Various ODE solvers are compared and a best performer is chosen. A new constraint on the time step based on numerical stability is proposed and verified in numerical simulations. It is shown through numerical examples that empirical rules for selecting the spatial discretization obtained in simple test problems may not be extended to more general problems. The thin tube vortex filament method is applied to the problem of Widnall`s instability on vortex rings. Numerical results different from previous calculations are presented and the source of the discrepancies is explained. The long time behavior of the unstable mode on thin vortex rings is simulated and analyzed. The short wave instability on vortex filaments is investigated both theoretically and numerically. It is shown that the short wave instability always occurs on co-rotating vortex filaments of fixed core structure. Furthermore when they are close to each other, vortex filaments produce short wave unstable modes which lead to wild stretching and folding. However, when the inter-filament distance is large in comparison with the core size of the filaments, unstable modes are bounded by a small fraction of the core size and the vortex filaments do not create hairpins nor wild stretching. These findings may explain the smooth behavior of the superfluid vortices. The formation of hairpin structures on numerical vortex filaments is investigated. It is shown that the formation of hairpin structures is independent of the ODE solver, of the time step and of other numerical parameters. The hairpin structures are primarily caused by short wave instability on co-rotating vortex filaments.

  2. Environmentalism and natural aggregate mining

    USGS Publications Warehouse

    Drew, L.J.; Langer, W.H.; Sachs, J.S.

    2002-01-01

    Sustaining a developed economy and expanding a developing one require the use of large volumes of natural aggregate. Almost all human activity (commercial, recreational, or leisure) is transacted in or on facilities constructed from natural aggregate. In our urban and suburban worlds, we are almost totally dependent on supplies of water collected behind dams and transported through aqueducts made from concrete. Natural aggregate is essential to the facilities that produce energy-hydroelectric dams and coal-fired powerplants. Ironically, the utility created for mankind by the use of natural aggregate is rarely compared favorably with the environmental impacts of mining it. Instead, the empty quarries and pits are seen as large negative environmental consequences. At the root of this disassociation is the philosophy of environmentalism, which flavors our perceptions of the excavation, processing, and distribution of natural aggregate. The two end-member ideas in this philosophy are ecocentrism and anthropocentrism. Ecocentrism takes the position that the natural world is a organism whose arteries are the rivers-their flow must not be altered. The soil is another vital organ and must not be covered with concrete and asphalt. The motto of the ecocentrist is "man must live more lightly on the land." The anthropocentrist wants clean water and air and an uncluttered landscape for human use. Mining is allowed and even encouraged, but dust and noise from quarry and pit operations must be minimized. The large volume of truck traffic is viewed as a real menace to human life and should be regulated and isolated. The environmental problems that the producers of natural aggregate (crushed stone and sand and gravel) face today are mostly difficult social and political concerns associated with the large holes dug in the ground and the large volume of heavy truck traffic associated with quarry and pit operations. These concerns have increased in recent years as society's demand for

  3. Solid-state NMR resonance assignments of the filament-forming CARD domain of the innate immunity signaling protein MAVS.

    PubMed

    He, Lichun; Lührs, Thorsten; Ritter, Christiane

    2015-10-01

    The mitochondrial antiviral signalling protein (MAVS) is a central signal transduction hub in the innate immune response against viral infections. Viral RNA present in the cytoplasm is detected by retinoic acid inducible gene I like receptors, which then activate MAVS via heterotypic interactions between their respective caspase activation and recruitment domains (CARD). This leads to the formation of active, high molecular weight MAVS complexes formed by homotypic interactions between the single N-terminal CARDs of MAVS. Filaments formed by the N-terminal MAVS(CARD) alone are sufficient to induce the autocatalytic conversion from a monomeric to an aggregated state in a prion-like manner. Here, we present the nearly complete spectroscopic (13)C and (15)N resonance assignments of human MAVS(CARD) filaments obtained from a single sample by magic angle spinning solid-state NMR spectroscopy. The corresponding secondary chemical shifts suggest that the filamentous form of MAVS(CARD) retains an exclusively alpha-helical fold that is very similar to the X-ray structure determined previously from monomeric MAVS(CARD)-maltose binding protein fusion constructs.

  4. Simulations of micro-swimmer scattering by soft elastic filaments

    NASA Astrophysics Data System (ADS)

    Ledesma-Aguilar, Rodrigo; Yeomans, Julia M.

    2012-11-01

    The locomotion of microorganisms in the presence of elastic filaments, such as hairs and flagella, is very common in biological systems. We perform a theoretical study, using a simple point-force hydrodynamic model, to analyse the scattering of a dipolar swimmer and semiflexible filaments. Our swimmers consist of active dumbbells that undergo a non-reciprocal swimming stroke leading to locomotion. Fluid-mediated interactions with the elastic chains are modelled using Oseen-level hydrodynamics. We explore the effect of the elasticity of the filaments on the swimmer velocity and orientation. We acknowledge support from Marie Curie Actions FP7-People-EIF-2010 no. 273406.

  5. Structural design criteria for filament-wound composite shells

    NASA Technical Reports Server (NTRS)

    Hahn, H. T.; Jensen, D. W.; Claus, S. J.; Pai, S. P.; Hipp, P. A.

    1994-01-01

    Advanced composite cylinders, manufactured by filament winding, provide a cost effective solution to many present structural applications; however, the compressive performance of filament-wound cylinders is lower than comparable shells fabricated from unidirectional tape. The objective of this study was to determine the cause of this reduction in thin filament-wound cylinders by relating the manufacturing procedures to the quality of the cylinder and to its compressive performance. The experiments on cylinder buckling were complemented by eigenvalue buckling analysis using a detailed geometric model in a finite element analysis. The applicability of classical buckling analyses was also investigated as a design tool.

  6. Spur-type instability observed on numerically simulated vortex filaments

    NASA Technical Reports Server (NTRS)

    Rossow, Vernon J.

    1988-01-01

    An instability observed on vortex filaments during numerical simulations of the three-dimensional, time-dependent dynamics of vortex wakes is studied to determine when and why it occurs. It is concluded that the observed instability is a consequence of the use of straight-line vortex segments of finite length to model continuously curving vortex filaments. The instability appears to occur only when the link length is a sizable fraction of the vortex span and, therefore, is not expected in an experiment. Guidelines are then given that help avoid numerical instabilities when vortex filaments are used in flow simulations.

  7. Controlling plasma channels through ultrashort laser pulse filamentation

    NASA Astrophysics Data System (ADS)

    Ionin, Andrey A.; Seleznev, Leonid V.; Sunchugasheva, Elena S.

    2013-10-01

    A review of studies fulfilled at the Lebedev Institute in collaboration with the Moscow State University and Institute of Atmospheric Optics in Tomsk (Siberia) on influence of various characteristics of ultrashort laser pulse on plasma channels formed under its filamentation is presented. Filamentation of high-power laser pulses with wavefront controlled by a deformable mirror, with cross-sections spatially formed by various diaphragms and with different wavelengths was experimentally and numerically studied. An application of plasma channels formed due to filamentation of ultrashort laser pulse including a train of such pulses for triggering and guiding electric discharge is discussed.

  8. NSTX Filament Preionization and Glow Discharge Cleaning Systems

    SciTech Connect

    Kugel, H. W.; Blanchard, W.; D'Amico, G.; Gernhardt, R.; Provost, T.

    1999-11-01

    Initial NSTX GDC experiments were performed with one moveable anode and a biased filament preionization system that allowed D2 and He Glow Discharge breakdowns at the actual operating pressure, voltage and current. The biased filament system was also operated continuously during ohmic operations, and used to reduce volt-sec consumption for February 1999 plasma discharges up to 280 KA. An upgraded system has been installed with 2 fixed wall anodes and 3 biased filaments; 2 on the mid-plane and one in the divertor region; all separately controllable remotely using a PLC system. Recent applications include assisting in preionization for 800 KA plasma discharges.

  9. Intermediate filaments and the regulation of focal adhesion.

    PubMed

    Leube, Rudolf E; Moch, Marcin; Windoffer, Reinhard

    2015-02-01

    Focal adhesions are localized actin filament-anchoring signalling centres at the cell-extracellular matrix interface. The currently emerging view is that they fulfil an all-embracing coordinating function for the entire cytoskeleton. This review highlights the tight relationship between focal adhesions and the intermediate filament cytoskeleton. We summarize the accumulating evidence for direct binding of intermediate filaments to focal adhesion components and their mutual cross-talk through signalling molecules. Examples are presented to emphasize the high degree of complexity of these interactions equipping cells with a precisely controlled machinery for context-dependent adjustment of their biomechanical properties.

  10. Unusual paired helical filaments in progressive supranuclear palsy.

    PubMed

    Takauchi, S; Mizuhara, T; Miyoshi, K

    1983-01-01

    Unusual paired helical filaments (PHF) coexisting with single filaments were observed in neurofibrillary degeneration (NFD) in the globus pallidus, subthalamic nucleus, substantia nigra, and pontine tegmentum of a typical case of progressive supra-nuclear palsy (PSP). Each filament had a diameter of 10-12 nm and showed central low density and a smooth contour. The thickest portion of a pair was 22-24 nm in diameter. The periodicity of twist varied from 150 nm to 300 nm, but each PHF had regular periodicity. The present ultrastructural finding is unusual in the neurofibrillary pathology of PSP, and is also different from the PHF found in Alzheimer type NFD. PMID:6682611

  11. Production of ozone and nitrogen oxides by laser filamentation

    SciTech Connect

    Petit, Yannick; Henin, Stefano; Kasparian, Jerome; Wolf, Jean-Pierre

    2010-07-12

    We have experimentally measured that laser filaments in air generate up to 10{sup 14}, 3x10{sup 12}, and 3x10{sup 13} molecules of O{sub 3}, NO, and NO{sub 2}, respectively. The corresponding local concentrations in the filament active volume are 10{sup 16}, 3x10{sup 14}, and 3x10{sup 15} cm{sup -3}, and allows efficient oxidative chemistry of nitrogen, resulting in concentrations of HNO{sub 3} in the parts per million range. The latter forming binary clusters with water, our results provide a plausible pathway for the efficient nucleation recently observed in laser filaments.

  12. Organic Acid Production by Filamentous Fungi

    SciTech Connect

    Magnuson, Jon K.; Lasure, Linda L.

    2004-05-03

    Many of the commercial production processes for organic acids are excellent examples of fungal biotechnology. However, unlike penicillin, the organic acids have had a less visible impact on human well-being. Indeed, organic acid fermentations are often not even identified as fungal bioprocesses, having been overshadowed by the successful deployment of the β-lactam processes. Yet, in terms of productivity, fungal organic acid processes may be the best examples of all. For example, commercial processes using Aspergillus niger in aerated stirred-tank-reactors can convert glucose to citric acid with greater than 80% efficiency and at final concentrations in hundreds of grams per liter. Surprisingly, this phenomenal productivity has been the object of relatively few research programs. Perhaps a greater understanding of this extraordinary capacity of filamentous fungi to produce organic acids in high concentrations will allow greater exploitation of these organisms via application of new knowledge in this era of genomics-based biotechnology. In this chapter, we will explore the biochemistry and modern genetic aspects of the current and potential commercial processes for making organic acids. The organisms involved, with a few exceptions, are filamentous fungi, and this review is limited to that group. Although yeasts including Saccharomyces cerevisiae, species of Rhodotorula, Pichia, and Hansenula are important organisms in fungal biotechnology, they have not been significant for commercial organic acid production, with one exception. The yeast, Yarrowia lipolytica, and related yeast species, may be in use commercially to produce citric acid (Lopez-Garcia, 2002). Furthermore, in the near future engineered yeasts may provide new commercial processes to make lactic acid (Porro, Bianchi, Ranzi, Frontali, Vai, Winkler, & Alberghina, 2002). This chapter is divided into two parts. The first contains a review of the commercial aspects of current and potential large

  13. Offshore advection of particles within the Cape Blanc filament, Mauritania: Results from observational and modelling studies

    NASA Astrophysics Data System (ADS)

    Fischer, G.; Reuter, C.; Karakas, G.; Nowald, N.; Wefer, G.

    2009-12-01

    This article will review major features of the ‘giant’ Cape Blanc filament off Mauritania with regard to the transport of chlorophyll and organic carbon from the shelf to the open ocean. Within the filament, chlorophyll is transported about 400 km offshore. Modelled particle distributions along a zonal transect at 21°N showed that particles with a sinking velocity of 5 m d -1 are advected offshore by up to 600 km in subsurface particle clouds generally located between 400 m and 800 m water depth, forming an Intermediate Nepheloid Layer (INL). It corresponds to the depth of the oxygen minimum zone. Heavier particles with a sinking velocity of 30 m d -1 are transported from the shelf within the Bottom Layer (BL) of more than 1000 m thickness, largely following the topography of the bottom slope. The particles advected within the BL contribute to the enhanced winter-spring mass fluxes collected at the open-ocean mesotrophic sediment trap site CB-13 (∼200 nm offshore), due to a long distance advection in deeper waters. The lateral contribution to the deep sediment trap in winter-spring is estimated to be 63% and 72% for organic carbon and total mass, respectively, whereas the lateral input for both components on an annual basis is estimated to be in the order of 15%. Biogenic opal increases almost fivefold from the upper to the lower mesotrophic CB-13 trap, also pointing to an additional source for biogenic silica from eutrophic coastal waters. Blooms obviously sink in smaller, probably mesoscale-sized patches with variable settling rates, depending on the type of aggregated particles and their ballast content. Generally, particle sinking rates are exceptionally high off NW Africa. Very high chlorophyll values and a large size of the Cape Blanc filament in 1998-1999 are also documented in enhanced total mass and organic carbon fluxes. An increasing trend in satellite chlorophyll concentrations and the size of the Cape Blanc filament between 1997 and 2008 as

  14. Studies on recycled aggregates-based concrete.

    PubMed

    Rakshvir, Major; Barai, Sudhirkumar V

    2006-06-01

    Reduced extraction of raw materials, reduced transportation cost, improved profits, reduced environmental impact and fast-depleting reserves of conventional natural aggregates has necessitated the use of recycling, in order to be able to conserve conventional natural aggregate. In this study various physical and mechanical properties of recycled concrete aggregates were examined. Recycled concrete aggregates are different from natural aggregates and concrete made from them has specific properties. The percentages of recycled concrete aggregates were varied and it was observed that properties such as compressive strength showed a decrease of up to 10% as the percentage of recycled concrete aggregates increased. Water absorption of recycled aggregates was found to be greater than natural aggregates, and this needs to be compensated during mix design.

  15. RAGG - R EPISODIC AGGREGATION PACKAGE

    EPA Science Inventory

    The RAGG package is an R implementation of the CMAQ episodic model aggregation method developed by Constella Group and the Environmental Protection Agency. RAGG is a tool to provide climatological seasonal and annual deposition of sulphur and nitrogen for multimedia management. ...

  16. Cyclosporine A enhances platelet aggregation.

    PubMed

    Grace, A A; Barradas, M A; Mikhailidis, D P; Jeremy, J Y; Moorhead, J F; Sweny, P; Dandona, P

    1987-12-01

    In view of the reported increase in thromboembolic episodes following cyclosporine A (CyA) therapy, the effect of this drug on platelet aggregation and thromboxane A2 release was investigated. The addition of CyA, at therapeutic concentrations to platelet rich plasma from normal subjects in vitro was found to increase aggregation in response to adrenaline, collagen and ADP. Ingestion of CyA by healthy volunteers was also associated with enhanced platelet aggregation. The CyA-mediated enhancement of aggregation was further enhanced by the addition in vitro of therapeutic concentrations of heparin. Platelets from renal allograft recipients treated with CyA also showed hyperaggregability and increased thromboxane A2 release, which were most marked at "peak" plasma CyA concentration and less so at "trough" concentrations. Platelet hyperaggregability in renal allograft patients on long-term CyA therapy tended to revert towards normal following the replacement of CyA with azathioprine. Hypertensive patients with renal allografts on nifedipine therapy had normal platelet function and thromboxane release in spite of CyA therapy. These observations suggest that CyA-mediated platelet activation may contribute to the pathogenesis of the thromboembolic phenomena associated with the use of this drug. The increased release of thromboxane A2 (a vasoconstrictor) may also play a role in mediating CyA-related nephrotoxicity.

  17. Repair of filament wound composite pipes

    NASA Astrophysics Data System (ADS)

    Amali, Ramin; Arnall, Heather

    2015-07-01

    Filament wound pipes are used in a wide variety of industries, due to the advantages composites have over metal pipes, such as a high strength to weight ratio, and resistance against frost, corrosion and heat. Composite pipes require minimal maintenance to ensure they are safe. Any damage occurring in composite pipes could lead to failure; therefore all damage should be assessed through NDT. If it is decided that the damage makes the pipe unsafe then a decision needs to be made whether to repair or replace the pipe. Repairing a composite pipe can be quicker, easier and cheaper than replacing it and can restore the strength of the pipe effectively. This investigation looks at the repair process and the parameters involved in determining the strength of the pipe following repair through the use of over 150 models in FEA software, Abaqus. Parameters considered include the pipe diameter and thickness, damage removal size and wrap width and thickness. It was found that if the pipe is thin-walled then it can be assumed that the pipe's thickness has no effect on the FOS following repair. Formulas were created to predict the FOS following repair for varying pipe diameters, damage sizes and wrap thickness. Formulas were also created to determine the wrap width required for varying wrap thicknesses and damage sizes.

  18. Tubular filamentation for laser material processing

    PubMed Central

    Xie, Chen; Jukna, Vytautas; Milián, Carles; Giust, Remo; Ouadghiri-Idrissi, Ismail; Itina, Tatiana; Dudley, John M.; Couairon, Arnaud; Courvoisier, Francois

    2015-01-01

    An open challenge in the important field of femtosecond laser material processing is the controlled internal structuring of dielectric materials. Although the availability of high energy high repetition rate femtosecond lasers has led to many advances in this field, writing structures within transparent dielectrics at intensities exceeding 1013 W/cm2 has remained difficult as it is associated with significant nonlinear spatial distortion. This letter reports the existence of a new propagation regime for femtosecond pulses at high power that overcomes this challenge, associated with the generation of a hollow uniform and intense light tube that remains propagation invariant even at intensities associated with dense plasma formation. This regime is seeded from higher order nondiffracting Bessel beams, which carry an optical vortex charge. Numerical simulations are quantitatively confirmed by experiments where a novel experimental approach allows direct imaging of the 3D fluence distribution within transparent solids. We also analyze the transitions to other propagation regimes in near and far fields. We demonstrate how the generation of plasma in this tubular geometry can lead to applications in ultrafast laser material processing in terms of single shot index writing, and discuss how it opens important perspectives for material compression and filamentation guiding in atmosphere. PMID:25753215

  19. The Apis mellifera Filamentous Virus Genome

    PubMed Central

    Gauthier, Laurent; Cornman, Scott; Hartmann, Ulrike; Cousserans, François; Evans, Jay D.; de Miranda, Joachim R.; Neumann, Peter

    2015-01-01

    A complete reference genome of the Apis mellifera Filamentous virus (AmFV) was determined using Illumina Hiseq sequencing. The AmFV genome is a double stranded DNA molecule of approximately 498,500 nucleotides with a GC content of 50.8%. It encompasses 247 non-overlapping open reading frames (ORFs), equally distributed on both strands, which cover 65% of the genome. While most of the ORFs lacked threshold sequence alignments to reference protein databases, twenty-eight were found to display significant homologies with proteins present in other large double stranded DNA viruses. Remarkably, 13 ORFs had strong similarity with typical baculovirus domains such as PIFs (per os infectivity factor genes: pif-1, pif-2, pif-3 and p74) and BRO (Baculovirus Repeated Open Reading Frame). The putative AmFV DNA polymerase is of type B, but is only distantly related to those of the baculoviruses. The ORFs encoding proteins involved in nucleotide metabolism had the highest percent identity to viral proteins in GenBank. Other notable features include the presence of several collagen-like, chitin-binding, kinesin and pacifastin domains. Due to the large size of the AmFV genome and the inconsistent affiliation with other large double stranded DNA virus families infecting invertebrates, AmFV may belong to a new virus family. PMID:26184284

  20. Molecular phylogeny of metazoan intermediate filament proteins.

    PubMed

    Erber, A; Riemer, D; Bovenschulte, M; Weber, K

    1998-12-01

    We have cloned cytoplasmic intermediate filament (IF) proteins from a large number of invertebrate phyla using cDNA probes, the monoclonal antibody IFA, peptide sequence information, and various RT-PCR procedures. Novel IF protein sequences reported here include the urochordata and nine protostomic phyla, i.e., Annelida, Brachiopoda, Chaetognatha, Echiura, Nematomorpha, Nemertea, Platyhelminthes, Phoronida, and Sipuncula. Taken together with the wealth of data on IF proteins of vertebrates and the results on IF proteins of Cephalochordata, Mollusca, Annelida, and Nematoda, two IF prototypes emerge. The L-type, which includes 35 sequences from 11 protostomic phyla, shares with the nuclear lamins the long version of the coil 1b subdomain and, in most cases, a homology segment of some 120 residues in the carboxyterminal tail domain. The S-type, which includes all four subfamilies (types I to IV) of vertebrate IF proteins, lacks 42 residues in the coil 1b subdomain and the carboxyterminal lamin homology segment. Since IF proteins from all three phyla of the chordates have the 42-residue deletion, this deletion arose in a progenitor prior to the divergence of the chordates into the urochordate, cephalochordate, and vertebrate lineages, possibly already at the origin of the deuterostomic branch. Four phyla recently placed into the protostomia on grounds of their 18S rDNA sequences (Brachiopoda, Nemertea, Phoronida, and Platyhelminthes) show IF proteins of the L-type and fit by sequence identity criteria into the lophotrochozoic branch of the protostomia.

  1. The Apis mellifera Filamentous Virus Genome.

    PubMed

    Gauthier, Laurent; Cornman, Scott; Hartmann, Ulrike; Cousserans, François; Evans, Jay D; de Miranda, Joachim R; Neumann, Peter

    2015-07-01

    A complete reference genome of the Apis mellifera Filamentous virus (AmFV) was determined using Illumina Hiseq sequencing. The AmFV genome is a double stranded DNA molecule of approximately 498,500 nucleotides with a GC content of 50.8%. It encompasses 247 non-overlapping open reading frames (ORFs), equally distributed on both strands, which cover 65% of the genome. While most of the ORFs lacked threshold sequence alignments to reference protein databases, twenty-eight were found to display significant homologies with proteins present in other large double stranded DNA viruses. Remarkably, 13 ORFs had strong similarity with typical baculovirus domains such as PIFs (per os infectivity factor genes: pif-1, pif-2, pif-3 and p74) and BRO (Baculovirus Repeated Open Reading Frame). The putative AmFV DNA polymerase is of type B, but is only distantly related to those of the baculoviruses. The ORFs encoding proteins involved in nucleotide metabolism had the highest percent identity to viral proteins in GenBank. Other notable features include the presence of several collagen-like, chitin-binding, kinesin and pacifastin domains. Due to the large size of the AmFV genome and the inconsistent affiliation with other large double stranded DNA virus families infecting invertebrates, AmFV may belong to a new virus family.

  2. Processing parameters for thermoplastic filament winding

    NASA Astrophysics Data System (ADS)

    Colton, J.; Leach, D.

    The consolidation pressure and winding speed for thermoplastic filament winding were studied. Thermoplastic composite parts were manufactured from tape prepreg (APC-2); powder-coated, semiconsolidated towpreg; and commingled fiber towpeg. The material used was carbon fiber (AS-4) (60 vol pct) in a PEEK matrix. The parts made were open-ended cylinders of the three materials, 177.8 mmID, 228.6 mm long, 17 plies thick with a 0 deg lay-up angle; and rings, 50 plies of APC-2 thick, 6.35 mm wide (one strip wide), 177.8 mm ID, and a lay-up of 0 deg. Their quality was determined by surface finish and void percentage. The tubes made from APC-2 appeared to have the best quality of the three prepregs. For the rings, the speed of lay down had a significant effect on both the final width of the parts and on the percentage of voids. The pressure of the roller had a significant effect on the final widths at a 99 percent confidence level, but only a significant effect on the percentage of voids at a 95 percent confidence level.

  3. Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi

    PubMed Central

    Soukup, Alexandra A.; Keller, Nancy P.; Wiemann, Philipp

    2016-01-01

    Filamentous fungi are historically known as rich sources for production of biologically active natural products, so-called secondary metabolites. One particularly pharmaceutically relevant chemical group of secondary metabolites is the nonribosomal peptides synthesized by nonribosomal peptide synthetases (NRPSs). As most of the fungal NRPS gene clusters leading to production of the desired molecules are not expressed under laboratory conditions, efforts to overcome this impediment are crucial to unlock the full chemical potential of each fungal species. One way to activate these silent clusters is by overexpressing and deleting global regulators of secondary metabolism. The conserved fungal-specific regulator of secondary metabolism, LaeA, was shown to be a valuable target for sleuthing of novel gene clusters and metabolites. Additionally, modulation of chromatin structures by either chemical or genetic manipulation has been shown to activate cryptic metabolites. Furthermore, NRPS-derived molecules seem to be affected by cross talk between the specific gene clusters and some of these metabolites have a tissue- or developmental-specific regulation. This chapter summarizes how this knowledge of different tiers of regulation can be combined to increase production of NRPS-derived metabolites in fungal species. PMID:26831707

  4. Tubular filamentation for laser material processing

    NASA Astrophysics Data System (ADS)

    Xie, Chen; Jukna, Vytautas; Milián, Carles; Giust, Remo; Ouadghiri-Idrissi, Ismail; Itina, Tatiana; Dudley, John M.; Couairon, Arnaud; Courvoisier, Francois

    2015-03-01

    An open challenge in the important field of femtosecond laser material processing is the controlled internal structuring of dielectric materials. Although the availability of high energy high repetition rate femtosecond lasers has led to many advances in this field, writing structures within transparent dielectrics at intensities exceeding 1013 W/cm2 has remained difficult as it is associated with significant nonlinear spatial distortion. This letter reports the existence of a new propagation regime for femtosecond pulses at high power that overcomes this challenge, associated with the generation of a hollow uniform and intense light tube that remains propagation invariant even at intensities associated with dense plasma formation. This regime is seeded from higher order nondiffracting Bessel beams, which carry an optical vortex charge. Numerical simulations are quantitatively confirmed by experiments where a novel experimental approach allows direct imaging of the 3D fluence distribution within transparent solids. We also analyze the transitions to other propagation regimes in near and far fields. We demonstrate how the generation of plasma in this tubular geometry can lead to applications in ultrafast laser material processing in terms of single shot index writing, and discuss how it opens important perspectives for material compression and filamentation guiding in atmosphere.

  5. On the interaction of dipolar filaments.

    PubMed

    Messina, René; Spiteri, Ludovic

    2016-08-01

    The interactions of dipolar filaments such as magnetic needles and chains in strong homogeneous magnetic/electric field are investigated theoretically. Revisiting the case of uniformly magnetized/polarized parallel needles of finite size L and separated by a distance R , all the relevant regimes of attraction and/or repulsion are properly addressed and discussed. At short inter-needle separation ( R/L ≲ 0.2, the repuive pair potential of two facing needles is governed by R(-1) in strong contrast with R(-3) at long separations (R/L ≳ 2.5). This softening is attributed to an efficient long-range screening owing to the relatively long needle extension in this regime. This whole understanding of dipolar needles effective interaction is then used to grasp that of dipolar chains made up of spherical dipolar beads. When excluded-volume correlations are weak (i.e., the chains are a few beads apart), chains and needles possess virtually the same effective interaction. However, at short separation there is a remarkable hardening upon approaching two chains in registry in qualitative contrast to the needles case. PMID:27562832

  6. Equilibrium theory for braided elastic filaments

    NASA Astrophysics Data System (ADS)

    van der Heijden, Gert

    Motivated by supercoiling of DNA and other filamentous structures, we formulate a theory for equilibria of 2-braids, i.e., structures formed by two elastic rods winding around each other in continuous contact and subject to a local interstrand interaction. Unlike in previous work no assumption is made on the shape of the contact curve. Rather, this shape is found as part of the solution. The theory is developed in terms of a moving frame of directors attached to one of the strands with one of the directors pointing to the position of the other strand. The constant-distance constraint is automatically satisfied by the introduction of what we call braid strains. The price we pay is that the potential energy involves arclength derivatives of these strains, thus giving rise to a second-order variational problem. The Euler-Lagrange equations for this problem give balance equations for the overall braid force and moment referred to the moving frame as well as differential equations that can be interpreted as effective constitutive relations encoding the effect that the second strand has on the first as the braid deforms under the action of end loads. Simple analytical cases are discussed first and used as starting solutions in parameter continuation studies to compute classes of both open and closed (linked or knotted) braid solutions.

  7. Tubular filamentation for laser material processing.

    PubMed

    Xie, Chen; Jukna, Vytautas; Milián, Carles; Giust, Remo; Ouadghiri-Idrissi, Ismail; Itina, Tatiana; Dudley, John M; Couairon, Arnaud; Courvoisier, Francois

    2015-01-01

    An open challenge in the important field of femtosecond laser material processing is the controlled internal structuring of dielectric materials. Although the availability of high energy high repetition rate femtosecond lasers has led to many advances in this field, writing structures within transparent dielectrics at intensities exceeding 10(13) W/cm(2) has remained difficult as it is associated with significant nonlinear spatial distortion. This letter reports the existence of a new propagation regime for femtosecond pulses at high power that overcomes this challenge, associated with the generation of a hollow uniform and intense light tube that remains propagation invariant even at intensities associated with dense plasma formation. This regime is seeded from higher order nondiffracting Bessel beams, which carry an optical vortex charge. Numerical simulations are quantitatively confirmed by experiments where a novel experimental approach allows direct imaging of the 3D fluence distribution within transparent solids. We also analyze the transitions to other propagation regimes in near and far fields. We demonstrate how the generation of plasma in this tubular geometry can lead to applications in ultrafast laser material processing in terms of single shot index writing, and discuss how it opens important perspectives for material compression and filamentation guiding in atmosphere. PMID:25753215

  8. Sequence-dependent Internalization of Aggregating Peptides*

    PubMed Central

    Couceiro, José R.; Gallardo, Rodrigo; De Smet, Frederik; De Baets, Greet; Baatsen, Pieter; Annaert, Wim; Roose, Kenny; Saelens, Xavier; Schymkowitz, Joost; Rousseau, Frederic

    2015-01-01

    Recently, a number of aggregation disease polypeptides have been shown to spread from cell to cell, thereby displaying prionoid behavior. Studying aggregate internalization, however, is often hampered by the complex kinetics of the aggregation process, resulting in the concomitant uptake of aggregates of different sizes by competing mechanisms, which makes it difficult to isolate pathway-specific responses to aggregates. We designed synthetic aggregating peptides bearing different aggregation propensities with the aim of producing modes of uptake that are sufficiently distinct to differentially analyze the cellular response to internalization. We found that small acidic aggregates (≤500 nm in diameter) were taken up by nonspecific endocytosis as part of the fluid phase and traveled through the endosomal compartment to lysosomes. By contrast, bigger basic aggregates (>1 μm) were taken up through a mechanism dependent on cytoskeletal reorganization and membrane remodeling with the morphological hallmarks of phagocytosis. Importantly, the properties of these aggregates determined not only the mechanism of internalization but also the involvement of the proteostatic machinery (the assembly of interconnected networks that control the biogenesis, folding, trafficking, and degradation of proteins) in the process; whereas the internalization of small acidic aggregates is HSF1-independent, the uptake of larger basic aggregates was HSF1-dependent, requiring Hsp70. Our results show that the biophysical properties of aggregates determine both their mechanism of internalization and proteostatic response. It remains to be seen whether these differences in cellular response contribute to the particular role of specific aggregated proteins in disease. PMID:25391649

  9. Characterization of Detergent-Insoluble Proteins in ALS Indicates a Causal Link between Nitrative Stress and Aggregation in Pathogenesis

    PubMed Central

    Basso, Manuela; Samengo, Giuseppina; Nardo, Giovanni; Massignan, Tania; D'Alessandro, Giuseppina; Tartari, Silvia; Cantoni, Lavinia; Marino, Marianna; Cheroni, Cristina; De Biasi, Silvia; Giordana, Maria Teresa; Strong, Michael J.; Estevez, Alvaro G.; Salmona, Mario; Bendotti, Caterina; Bonetto, Valentina

    2009-01-01

    Background Amyotrophic lateral sclerosis (ALS) is a progressive and fatal motor neuron disease, and protein aggregation has been proposed as a possible pathogenetic mechanism. However, the aggregate protein constituents are poorly characterized so knowledge on the role of aggregation in pathogenesis is limited. Methodology/Principal Findings We carried out a proteomic analysis of the protein composition of the insoluble fraction, as a model of protein aggregates, from familial ALS (fALS) mouse model at different disease stages. We identified several proteins enriched in the detergent-insoluble fraction already at a preclinical stage, including intermediate filaments, chaperones and mitochondrial proteins. Aconitase, HSC70 and cyclophilin A were also significantly enriched in the insoluble fraction of spinal cords of ALS patients. Moreover, we found that the majority of proteins in mice and HSP90 in patients were tyrosine-nitrated. We therefore investigated the role of nitrative stress in aggregate formation in fALS-like murine motor neuron-neuroblastoma (NSC-34) cell lines. By inhibiting nitric oxide synthesis the amount of insoluble proteins, particularly aconitase, HSC70, cyclophilin A and SOD1 can be substantially reduced. Conclusion/Significance Analysis of the insoluble fractions from cellular/mouse models and human tissues revealed novel aggregation-prone proteins and suggests that nitrative stress contribute to protein aggregate formation in ALS. PMID:19956584

  10. An Aggregation Advisor for Ligand Discovery.

    PubMed

    Irwin, John J; Duan, Da; Torosyan, Hayarpi; Doak, Allison K; Ziebart, Kristin T; Sterling, Teague; Tumanian, Gurgen; Shoichet, Brian K

    2015-09-10

    Colloidal aggregation of organic molecules is the dominant mechanism for artifactual inhibition of proteins, and controls against it are widely deployed. Notwithstanding an increasingly detailed understanding of this phenomenon, a method to reliably predict aggregation has remained elusive. Correspondingly, active molecules that act via aggregation continue to be found in early discovery campaigns and remain common in the literature. Over the past decade, over 12 thousand aggregating organic molecules have been identified, potentially enabling a precedent-based approach to match known aggregators with new molecules that may be expected to aggregate and lead to artifacts. We investigate an approach that uses lipophilicity, affinity, and similarity to known aggregators to advise on the likelihood that a candidate compound is an aggregator. In prospective experimental testing, five of seven new molecules with Tanimoto coefficients (Tc's) between 0.95 and 0.99 to known aggregators aggregated at relevant concentrations. Ten of 19 with Tc's between 0.94 and 0.90 and three of seven with Tc's between 0.89 and 0.85 also aggregated. Another three of the predicted compounds aggregated at higher concentrations. This method finds that 61 827 or 5.1% of the ligands acting in the 0.1 to 10 μM range in the medicinal chemistry literature are at least 85% similar to a known aggregator with these physical properties and may aggregate at relevant concentrations. Intriguingly, only 0.73% of all drug-like commercially available compounds resemble the known aggregators, suggesting that colloidal aggregators are enriched in the literature. As a percentage of the literature, aggregator-like compounds have increased 9-fold since 1995, partly reflecting the advent of high-throughput and virtual screens against molecular targets. Emerging from this study is an aggregator advisor database and tool ( http://advisor.bkslab.org ), free to the community, that may help distinguish between

  11. History and phylogeny of intermediate filaments: Now in insects

    PubMed Central

    2011-01-01

    Intermediate filaments include the nuclear lamins, which are universal in metazoans, and the cytoplasmic intermediate filaments, which are much more varied and form cell type-specific networks in animal cells. Until now, it has been thought that insects harbor lamins only. This view is fundamentally challenged by the discovery, reported in BMC Biology, of an intermediate filament-like cytoplasmic protein, isomin, in the hexapod Isotomurus maculatus. Here we briefly review the history of research on intermediate filaments, and discuss the implications of this latest finding in the context of what is known of their structure and functions. See research article: http://www.biomedcentral.com/1741-7007/9/17 PMID:21356127

  12. Evaluation of filamentous green algae as feedstocks for biofuel production.

    PubMed

    Zhang, Wei; Zhao, Yonggang; Cui, Binjie; Wang, Hui; Liu, Tianzhong

    2016-11-01

    Compared with unicellular microalgae, filamentous algae have high resistance to grazer-predation and low-cost recovery in large-scale production. Green algae, as the most diverse group of algae, included numerous filamentous genera and species. In this study, records of filamentous genera and species in green algae were firstly censused and classified. Then, seven filamentous strains subordinated in different genera were cultivated in bubbled-column to investigate their growth rate and energy molecular (lipid and starch) capacity. Four strains including Stigeoclonium sp., Oedogonium nodulosum, Hormidium sp. and Zygnema extenue were screened out due to their robust growth. And they all could accumulate triacylglycerols and starch in their biomass, but with different capacity. After nitrogen starvation, Hormidium sp. and Oedogonium nodulosum respectively exhibited high capacity of lipid (45.38% in dry weight) and starch (46.19% in dry weight) accumulation, which could be of high potential as feedstocks for biodiesel and bioethanol production. PMID:27598569

  13. Method for preparing metallated filament-wound structures

    DOEpatents

    Peterson, George R.

    1979-01-01

    Metallated graphite filament-wound structures are prepared by coating a continuous multi-filament carbon yarn with a metal carbide, impregnating the carbide coated yarn with a polymerizable carbon precursor, winding the resulting filament about a mandrel, partially curing the impregnation in air, subjecting the wound composite to heat and pressure to cure the carbon precursor, and thereafter heating the composite in a sizing die at a pressure loading of at least 1000 psi for graphitizing the carbonaceous material in the composite. The carbide in the composite coalesces into rod-like shapes which are disposed in an end-to-end relationship parallel with the filaments to provide resistance to erosion in abrasive laden atmospheres.

  14. Filamentation instability of a relativistic hollow electron beam. Final report

    SciTech Connect

    Uhm, H.S.; Siambis, J.G.

    1981-09-01

    The filamentation instability properties of a relativistic hollow electron beam confined in axial flow by a uniform magnetic field in a pipe are investigated via the Vlasov-Maxwell equations. The instability is found to have two side-bands, one with a spectrum of positive wavenumbers k and the other with a spectrum of negative wavenumbers. The spectral point k=0, associated with the diokotron instability, is excluded from the filamentation instability's two unstable sidebands. Only in the limit of zero axial beam flow, the diokotron instability becomes asymptotically part of the filamentation instability spectrum. In this limit the filamentation instability's two sidebands merge asymptotically and symmetrically toward the diokotron instability spectral point, k=0, in agreement with the basic driving physical mechanisms and geometry configurations for these two distinct and different instabilities.

  15. Filamentation instability of a relativistic hollow electron beam

    SciTech Connect

    Siambis, J.G.; Uhm, H.S.

    1982-03-01

    The filamentation instability properties of a relativistic hollow electron beam confined in axial flow by a uniform magnetic field, in the absence of background plasma, in a pipe are investigated via the Vlasov--Maxwell equations. The instability is found to be have two sidebands, one with a spectrum of positive wavenumbers k and the other with a spectrum of negative wavenumbers. The spectral point k = 0, associated with the diokotron instability, is excluded from the two unstable sidebands of the filamentation instability. Only in the limit of zero axial beam flow (..gamma -->..1), does the diokotron instability become asymptotically part of the filamentation instability spectrum. In this limit, the two sidebands of the filamentation instability merge asymptotically and symmetrically toward the diokotron instability spectral point, k = 0, in agreement with the basic driving physical mechanisms and geometry configurations for these two distinct and different instabilities.

  16. Numerical studies of motion and decay of vortex filaments

    NASA Technical Reports Server (NTRS)

    Liu, C. H.; Tavantzis, J.; Ting, L.

    1986-01-01

    A computational code is developed for the integro-differential equations governing the motion of the centerlines of vortex filaments submerged in a background potential flow. These equations, which are derived from the method of matched asymptotic analysis, include the effect of decaying large-magnitude circumferential and axial velocity components in the vortical cores. Numerical examples are presented to assess the effect of large axial velocity and of nonsimilar initial profiles in vortical cores. The initial configurations of the filaments are chosen so as to fulfill the basic assumption of asymptotic analysis, which is the effective vortical core size is much smaller than all other length scales in the flowfield, e.g., the radius of curvature and interfilament distance. The computations are continued until the basic assumption is no longer valid, that is, when the merging or intersection of filaments have begun. Various types of local or global merging or intersection of filaments are classified and demonstrated by numerical examples.

  17. MASS COMPOSITION IN PRE-ERUPTION QUIET SUN FILAMENTS

    SciTech Connect

    Kilper, Gary; Gilbert, Holly; Alexander, David

    2009-10-10

    Filament eruptions are extremely important phenomena due to their association with coronal mass ejections and their effects on space weather. Little is known about the filament mass and composition in the eruption process, since most of the related research has concentrated on the evolution and disruption of the magnetic field. Following up on our previous work, we present here an analysis of nineteen quiet Sun filament eruptions observed by Mauna Loa Solar Observatory in Halpha and He I 10830 A that has identified a compositional precursor common to all of these eruptions. There is a combined trend of an apparent increase in the homogenization of the filament mass composition, with concurrent increases in absorption in Halpha and He I and in the level of activity, all starting at least one day prior to eruption. This finding suggests that a prolonged period of mass motions, compositional mixing, and possibly even extensive mass loading is occurring during the build up of these eruptions.

  18. Dynamic exchange of myosin molecules between thick filaments.

    PubMed

    Saad, A D; Pardee, J D; Fischman, D A

    1986-12-01

    To examine thick filament assembly and myosin exchange, a fluorescence energy transfer assay has been established. Assembly-competent myosin molecules labeled with the sulfhydryl-specific fluorochromes 5-(2-[(iodoacetyl)-amino]ethyl)aminonaphthalene-1-sulfonic acids (IAEDANS) or 5-iodoacetamidofluorescein (IAF) were prepared. Using IAEDANS-labeled myosin as fluorescence donor and IAF-labeled myosin as acceptor, thick filament formation was followed by the decrease in donor fluorescence at 0.1 M KCl/10 mM potassium phosphate, pH 6.9. The critical concentration of myosin--i.e., that concentration that remained unassembled at equilibrium with fully formed filaments--was 40 nM. In FET and 125I-labeled myosin incorporation assays, extensive exchange of myosin between thick filaments was observed. The presence of a critical concentration and the measurements of extensive exchange suggest a dynamic equilibrium between fully polymerized myosin and a small pool of soluble myosin.

  19. Filamentous Phages As a Model System in Soft Matter Physics.

    PubMed

    Dogic, Zvonimir

    2016-01-01

    Filamentous phages have unique physical properties, such as uniform particle lengths, that are not found in other model systems of rod-like colloidal particles. Consequently, suspensions of such phages provided powerful model systems that have advanced our understanding of soft matter physics in general and liquid crystals in particular. We described some of these advances. In particular we briefly summarize how suspensions of filamentous phages have provided valuable insight into the field of colloidal liquid crystals. We also describe recent experiments on filamentous phages that have elucidated a robust pathway for assembly of 2D membrane-like materials. Finally, we outline unique structural properties of filamentous phages that have so far remained largely unexplored yet have the potential to further advance soft matter physics and material science. PMID:27446051

  20. Broken Detailed Balance of Filament Dynamics in Active Networks

    NASA Astrophysics Data System (ADS)

    Gladrow, J.; Fakhri, N.; MacKintosh, F. C.; Schmidt, C. F.; Broedersz, C. P.

    2016-06-01

    Myosin motor proteins drive vigorous steady-state fluctuations in the actin cytoskeleton of cells. Endogenous embedded semiflexible filaments such as microtubules, or added filaments such as single-walled carbon nanotubes are used as novel tools to noninvasively track equilibrium and nonequilibrium fluctuations in such biopolymer networks. Here, we analytically calculate shape fluctuations of semiflexible probe filaments in a viscoelastic environment, driven out of equilibrium by motor activity. Transverse bending fluctuations of the probe filaments can be decomposed into dynamic normal modes. We find that these modes no longer evolve independently under nonequilibrium driving. This effective mode coupling results in nonzero circulatory currents in a conformational phase space, reflecting a violation of detailed balance. We present predictions for the characteristic frequencies associated with these currents and investigate how the temporal signatures of motor activity determine mode correlations, which we find to be consistent with recent experiments on microtubules embedded in cytoskeletal networks.

  1. Solar Filament Eruption, Solar Tsunami - Close-up

    NASA Video Gallery

    Close-up of magnetic solar filament erupting during the early hours of February 24, 2012. Notice closer to the surface the solar atmosphere splits and waves of solar material fan out in opposite di...

  2. Filamentous Phages As a Model System in Soft Matter Physics.

    PubMed

    Dogic, Zvonimir

    2016-01-01

    Filamentous phages have unique physical properties, such as uniform particle lengths, that are not found in other model systems of rod-like colloidal particles. Consequently, suspensions of such phages provided powerful model systems that have advanced our understanding of soft matter physics in general and liquid crystals in particular. We described some of these advances. In particular we briefly summarize how suspensions of filamentous phages have provided valuable insight into the field of colloidal liquid crystals. We also describe recent experiments on filamentous phages that have elucidated a robust pathway for assembly of 2D membrane-like materials. Finally, we outline unique structural properties of filamentous phages that have so far remained largely unexplored yet have the potential to further advance soft matter physics and material science.

  3. Evaluation of filamentous green algae as feedstocks for biofuel production.

    PubMed

    Zhang, Wei; Zhao, Yonggang; Cui, Binjie; Wang, Hui; Liu, Tianzhong

    2016-11-01

    Compared with unicellular microalgae, filamentous algae have high resistance to grazer-predation and low-cost recovery in large-scale production. Green algae, as the most diverse group of algae, included numerous filamentous genera and species. In this study, records of filamentous genera and species in green algae were firstly censused and classified. Then, seven filamentous strains subordinated in different genera were cultivated in bubbled-column to investigate their growth rate and energy molecular (lipid and starch) capacity. Four strains including Stigeoclonium sp., Oedogonium nodulosum, Hormidium sp. and Zygnema extenue were screened out due to their robust growth. And they all could accumulate triacylglycerols and starch in their biomass, but with different capacity. After nitrogen starvation, Hormidium sp. and Oedogonium nodulosum respectively exhibited high capacity of lipid (45.38% in dry weight) and starch (46.19% in dry weight) accumulation, which could be of high potential as feedstocks for biodiesel and bioethanol production.

  4. Filamentous Phages As a Model System in Soft Matter Physics

    PubMed Central

    Dogic, Zvonimir

    2016-01-01

    Filamentous phages have unique physical properties, such as uniform particle lengths, that are not found in other model systems of rod-like colloidal particles. Consequently, suspensions of such phages provided powerful model systems that have advanced our understanding of soft matter physics in general and liquid crystals in particular. We described some of these advances. In particular we briefly summarize how suspensions of filamentous phages have provided valuable insight into the field of colloidal liquid crystals. We also describe recent experiments on filamentous phages that have elucidated a robust pathway for assembly of 2D membrane-like materials. Finally, we outline unique structural properties of filamentous phages that have so far remained largely unexplored yet have the potential to further advance soft matter physics and material science. PMID:27446051

  5. Apparatus for coating and impregnating filament with resin

    DOEpatents

    Robinson, S.C.; Pollard, R.E.

    1986-12-17

    The present invention is directed to an apparatus for evenly coating and impregnating a filament with binder material. Dimension control and repeatability of the coating and impregnating characteristics are obtained with the apparatus.

  6. Actin filaments on myosin beds: The velocity distribution

    NASA Astrophysics Data System (ADS)

    Bourdieu, L.; Magnasco, M. O.; Winkelmann, D. A.; Libchaber, A.

    1995-12-01

    In vitro studies of actin filaments sliding on a myosin-coated surface are analyzed, filament by filament, at a sampling rate of 30 per second. For each filament, the mean arc length coordinate is computed and histograms of instantaneous velocities, along the arc length, are established. Two types of motion are observed, depending on the experimental conditions. The first one is characterized by a homogeneous flow, with well defined velocities. In this regime, specific defects are a constitutive part of the flow. It is observed at high temperature, at high myosin coverage, and with a particular mode of attachment of myosin to the surface. The second regime shows no clear velocity selection, but a broadband distribution. It is characterized by high friction and is observed at low temperature or low myosin density. (c) 1995 The American Physical Society

  7. Calcium ion-regulated thin filaments from vascular smooth muscle.

    PubMed Central

    Marston, S B; Trevett, R M; Walters, M

    1980-01-01

    Myosin and actin competition tests indicated the presence of both thin-filament and myosin-linked Ca2+-regulatory systems in pig aorta and turkey gizzard smooth-muscle actomyosin. A thin-filament preparation was obtained from pig aortas. The thin filaments had no significant ATPase activity [1.1 +/- 2.6 nmol/mg per min (mean +/- S.D.)], but they activated skeletal-muscle myosin ATPase up to 25-fold [500 nmol/mg of myosin per min (mean +/- S.D.)] in the presence of 10(-4) M free Ca2+. At 10(-8) M-Ca2+ the thin filaments activated myosin ATPase activity only one-third as much. Thin-filament activation of myosin ATPase activity increased markedly in the range 10(-6)-10(-5) M-Ca2+ and was half maximal at 2.7 x 10(-6) M (pCa2+ 5.6). The skeletal myosin-aorta-thin-filament mixture gave a biphasic ATPase-rate-versus-ATP-concentration curve at 10(-8) M-Ca2+ similar to the curve obtained with skeletal-muscle thin filaments. Thin filaments bound up to 9.5 mumol of Ca2+/g in the presence of MgATP2-. In the range 0.06-27 microM-Ca2+ binding was hyperbolic with an estimated binding constant of (0.56 +/- 0.07) x 10(6) M-1 (mean +/- S.D.) and maximum binding of 8.0 +/- 0.8 mumol/g (mean +/- S.D.). Significantly less Ca2+ bound in the absence of ATP. The thin filaments contained actin, tropomyosin and several other unidentified proteins. 6 M-Urea/polyacrylamide-gel electrophoresis at pH 8.3 showed proteins that behaved like troponin I and troponin C. This was confirmed by forming interspecific complexes between radioactive skeletal-muscle troponin I and troponin C and the aorta thin-filament proteins. The thin filaments contained at least 1.4 mumol of a troponin C-like protein/g and at least 1.1 mumol of a troponin I-like protein/g. PMID:6446898

  8. THREE-DIMENSIONAL SHAPE AND EVOLUTION OF TWO ERUPTIVE FILAMENTS

    SciTech Connect

    Li Ting; Zhang Jun; Yang Shuhong; Zhao Hui E-mail: zjun@nao.cas.c E-mail: v00975@phys.nthu.edu.t

    2010-09-01

    On 2009 September 26, a dramatic and large filament (LF) eruption and a small filament (SF) eruption were observed in the He II 304 A line by the two EUVI telescopes aboard the STEREO A and B spacecraft. The LF heads out into space and becomes the bright core of a gradual coronal mass ejection (CME), while the eruption of the SF is characterized by motions of the filament materials. Using stereoscopic analysis of EUVI data, we reconstruct the three-dimensional shape and evolution of two eruptive filaments. For the first time, we investigate the true velocities and accelerations of 12 points along the axis of the LF, and find that the velocity and acceleration vary with the measured location. The highest points among the 12 points are the fastest in the first half hour, and then the points at the low-latitude leg of the LF become the fastest. For the SF, it is an asymmetric whip-like filament eruption, and the downward motions of the material lead to the disappearance of the former high-latitude endpoint and the formation of a new low-latitude endpoint. Based on the temporal evolution of the two filaments, we infer that the two filaments lie in the same filament channel. By combining the EUVI, COR1, and COR2 data of STEREO A together, we find that there is no impulsive or fast acceleration in this event. It displays a weak and persistent acceleration for more than 17 hr. The average velocity and acceleration of the LF are 101.8 km s{sup -1} and 2.9 m s{sup -2}, respectively. The filament eruptions are associated with a slow CME with an average velocity of 177.4 km s{sup -1}. The velocity of the CME is nearly 1.6 times as large as that of the filament material. This event is one example of a gradual filament eruption associated with a gradual CME. In addition, the moving direction of the LF changes from a non-radial to a nearly radial direction with a variation of inclination angle of nearly 38.{sup 0}2.

  9. Early Archean (approximately 3.4 Ga) prokaryotic filaments from cherts of the apex basalt, Western Australia: The oldest cellularly preserved microfossils now known

    NASA Technical Reports Server (NTRS)

    Schopf, J. W.

    1991-01-01

    In comparison with that known from later geologic time, the Archean fossil record is miniscule: although literally hundreds of Proterozoic formations, containing more that 2800 occurrences of bona fide microfossils are now known, fewer than 30 units containing some 43 categories of putative microfossils (the vast majority of which are of questionable authenticity) have been reported from the Archean. Among the oldest known fossils are Early Archean filaments reported from cherts of the Towers Formation and the Apex Basalt of the 3.3-3.6 Ga-old Warrawoona Group of Western Australia. The paleobiologic significance of the Towers Formation microstructures is open to question: thin aggregated filaments are properly regarded as dubiomicrofossils (perhaps biogenic, but perhaps not); therefore, they cannot be regarded as firm evidence of Archean life. Although authentic, filamentous microfossiles were reported from a second Towers Formation locality, because the precise layer containing the fossiliferous cherts was not relocated, this discovery can neither be reconfirmed by the original collector nor confirmed independently by other investigators. Discovery of microfossils in bedded cherts of the Apex Basalt, the stratigraphic unit immediately overlying the Towers Formation, obviates the difficulties stored above. The cellularly preserved filaments of the Apex Basalt meet all of the criteria required of a bona fide Archean microfossils. Recent studies indicate that the Apex assemblage includes at least six morphotypes of uniseriate filaments, composed of barrel-shaped, discoidal, or quadrate cells and exhibiting rounded or conical terminal cells and medial bifurcated and paired half-cells that reflect the occurrence of prokaryotic binary cell division. Interestingly, the majority of these morphotypes are morphologically more similar to extant cyanobacteria than to modern filamentous bacteria. Prokaryotes seem clearly to have been hypobradytelic, and the evidence suggests

  10. Nebular history of amoeboid olivine aggregates

    NASA Astrophysics Data System (ADS)

    Sugiura, N.; Petaev, M. I.; Kimura, M.; Miyazaki, A.; Hiyagon, H.

    2009-05-01

    Minor element (Ca, Cr, and Mn) concentrations in amoeboid olivine aggregates (AOAs) from primitive chondrites were measured and compared with those predicted by equilibrium condensation in the solar nebula. CaO concentrations in forsterite are low, particularly in porous aggregates. A plausible explanation appears that an equilibrium Ca activity was not maintained during the olivine condensation. CaO and MnO in forsterite are negatively correlated, with CaO being higher in compact aggregates. This suggests that the compact aggregates formed either by a prolonged reheating of the porous aggregates or by condensation and aggregation of forsterite during a very slow cooling in the nebula.

  11. Energy deposition of single femtosecond filaments in the atmosphere.

    PubMed

    Rosenthal, E W; Jhajj, N; Larkin, I; Zahedpour, S; Wahlstrand, J K; Milchberg, H M

    2016-08-15

    We present spatially resolved measurements of energy deposition into atmospheric air by femtosecond laser filaments. Single filaments formed with varying laser pulse energy and pulsewidth were examined using longitudinal interferometry, sonographic probing, and direct energy loss measurements. We measure peak and average energy absorption of ∼4  μJ/cm and ∼1  μJ/cm for input pulse powers up to ∼6 times the critical power for self-focusing. PMID:27519120

  12. 13CO filaments in the Taurus molecular cloud

    NASA Astrophysics Data System (ADS)

    Panopoulou, G. V.; Tassis, K.; Goldsmith, P. F.; Heyer, M. H.

    2014-11-01

    We have carried out a search for filamentary structures in the Taurus molecular cloud using 13CO line emission data from the Five Colleges Radio Astronomy Observatory survey of ˜100 deg2. We have used the topological analysis tool, Discrete Persistent Structures Extractor (DISPERSE), and post-processed its results to include a more strict definition of filaments that requires an aspect ratio of at least 3:1 and cross-section intensity profiles peaked on the spine of the filament. In the velocity-integrated intensity map only 10 of the hundreds of filamentary structures identified by DISPERSE comply with our criteria. Unlike Herschel analyses, which find a characteristic width for filaments of ˜0.1 pc, we find a much broader distribution of profile widths in our structures, with a peak at 0.4 pc. Furthermore, even if the identified filaments are cylindrical objects, their complicated velocity structure and velocity dispersions imply that they are probably gravitationally unbound. Analysis of velocity channel maps reveals the existence of hundreds of `velocity-coherent' filaments. The distribution of their widths is peaked at lower values (0.2 pc) while the fluctuation of their peak intensities is indicative of stochastic origin. These filaments are suppressed in the integrated intensity map due to the blending of diffuse emission from different velocities. Conversely, integration over velocities can cause filamentary structures to appear. Such apparent filaments can also be traced, using the same methodology, in simple simulated maps consisting of randomly placed cores. They have profile shapes similar to observed filaments and contain most of the simulated cores.

  13. Appearance of dusty filaments at different viewing angles

    NASA Astrophysics Data System (ADS)

    Chira, R.-A.; Siebenmorgen, R.; Henning, Th.; Kainulainen, J.

    2016-08-01

    Context. In recent years, there have been many studies on the omnipresence and structures of filaments in star-forming regions, as well as their role in the process of star formation. These filaments are normally identified as elongated fibres across the plane of the sky. But how would we detect filaments that are inclined? Aims: We aim to learn more about whether, and how, total column density or dust temperature change with respect to the line of sight. These variations would enable observers to use dust observations to identify and study filaments at any inclination and gain more insight into the distribution and orientations of filaments within the Galactic plane. Methods: As a first step, we perform numerical calculations on simple cylindrical models to evaluate the influence of filament geometry on the average flux density. After that, we apply our three-dimensional Monte Carlo dust-radiative transfer code on two models of star-forming regions and derive maps of effective total column density and dust temperature at different viewing angles. Results: We only see slight changes of average flux density for all cylinders we study. For our more complex models, we find that the effective dust temperature is not sensitive to viewing angle, while the total column density is strongly influenced, with differences exceeding an order of magnitude. The variations are not injective with the viewing angle and depend on the structure of the object. Conclusions: We conclude that there is no single quantity in our analysis that can uniquely trace the inclination and three-dimensional structure of a filament based on dust observations alone. However, observing wide variations in total column density at a given effective dust temperature is indicative of inclined filaments.

  14. Scrape off layer profiles interpreted with filament dynamics

    NASA Astrophysics Data System (ADS)

    Militello, F.; Omotani, J. T.

    2016-10-01

    A theoretical framework is developed to link the density profiles in the scrape off layer (SOL) with the fluctuations (filaments) that generate them. The framework is based on the dynamics of independent filaments and their statistical behaviour and can be used to rigorously understand the mechanisms that lead to flattening and broadening of the SOL profiles as well as the radial increase of the relative fluctuation amplitude.

  15. 7-forming, superconducting filaments through bicomponent dry spinning

    DOEpatents

    Tuominen, Olli P.; Morgan, Carol W.; Burlone, Dominick A.; Blankenship, Keith V.

    2001-01-01

    Fibers which contain potentially superconducting material are dry spun by the steps of preparing a suspension of potentially superconducting powder in a thickened solvent; preparing a solution of fiber-forming polymer; supplying the suspension and the solution to a spinning apparatus; in the spinning apparatus, arranging the solution and the suspension in a bicomponent arrangement; extruding the arranged solution and suspension from a spinneret as a bicomponent filament; and removing the solvent from the filament.

  16. Radiation-induced grafting of acrylic acid onto polyethylene filaments

    NASA Astrophysics Data System (ADS)

    Kaji, K.; Okada, T.; Sakurada, I.

    Radiation-induced grafting of acrylic acid onto high density polyethylene (PE) filaments was carried out in order to raise softening temperature and impart flame retardance and hydrophilic properties. Mutual γ-irradiation method was employed for the grafting in a mixture of acrylic acid (AA), ethylene dichloride and water containing a small amount of ferrous ammonium sulfate. The rate of grafting was very low at room temperature. On the other hand, large percent grafts were obtained when the grafting was performed at an elevated temperature. Activation energy for the initial rate of grafting was found to be 17 {kcal}/{mol} between 20 and 60°C and 10 {kcal}/{mol} between 60 and 80°C. Original PE filament begins to shrink at 70°C, show maximum shrinkage of 50% at 130°C and then breaks off at 136°C. When a 34% AA graft is converted to metallic salt such as sodium and calcium, the graft filament retains its filament form even above 300°C and gives maximum shrinkage of 15%. Burning tests by a wire-netting basket method indicate that graft filaments and its metallic salts do not form melting drops upon burning and are self-extinguishing. Original PE filament shows no moisture absorption, however, that of AA-grafted PE increases with increasing graft percent. The sodium salt of 15% graft shows the same level of moisture regain as cotton. The AA-grafted PE filament and its metallic salts can be dyed with cationic dyes even at 1% graft. Tensile properties of PE filament is impaired neither by grafting nor by conversion to metallic salts.

  17. Self-organized bundle of lasing filaments in dense media

    SciTech Connect

    Guyon, L.; Courvoisier, F.; Boutou, V.; Nuter, R.; Vincotte, A.; Champeaux, S.; Berge, L.; Glorieux, P.; Wolf, J.-P.

    2006-05-15

    The filamentation of powerful, ultrashort laser pulses in liquids is investigated. It is shown that the multiple filaments produced in ethanol can be modified into controllable, regular patterns by doping the medium with dyes at high concentrations. Experimental results are confirmed by three-dimensional numerical simulations. Pump-dump pulse experiments furthermore reveal that the stimulated emission from excited dye molecules in the bundle can be locked in phase and leads to bright interference patterns.

  18. Observations of a Filament in the North Ecliptic Pole Supercluster

    NASA Technical Reports Server (NTRS)

    Henry, Joseph Henry

    2005-01-01

    Our work on the ROSAT All-Sky Survey at the North Ecliptic Pole has increased from 7 to 21 the group and cluster membership of a previously known supercluster there, revealing a particularly striking example of a filament. We obtained observations of two clusters in this filament to elucidate its dynamics. However, these observations were severely compromised by flares: less than 20% of the requested time survived screening. Consequently the data were inadequate for the project.

  19. Clamped-filament elongation model for actin-based motors.

    PubMed Central

    Dickinson, Richard B; Purich, Daniel L

    2002-01-01

    Although actin-based motility drives cell crawling and intracellular locomotion of organelles and certain pathogens, the underlying mechanism of force generation remains a mystery. Recent experiments demonstrated that Listeria exhibit episodes of 5.4-nm stepwise motion corresponding to the periodicity of the actin filament subunits, and extremely small positional fluctuations during the intermittent pauses [S. C. Kuo and J. L. McGrath. 2000. Nature. 407:1026-1029]. These findings suggest that motile bacteria remain firmly bound to actin filament ends as they elongate, a behavior that appears to rule out previous models for actin-based motility. We propose and analyze a new mechanochemical model (called the "Lock, Load & Fire" mechanism) for force generation by means of affinity-modulated, clamped-filament elongation. During the locking step, the filament's terminal ATP-containing subunit binds tightly to a clamp situated on the surface of a motile object; in the loading step, actin.ATP monomer(s) bind to the filament end, an event that triggers the firing step, wherein ATP hydrolysis on the clamped subunit attenuates the filament's affinity for the clamp. This last step initiates translocation of the new ATP-containing terminus to the clamp, whereupon another cycle begins anew. This model explains how surface-tethered filaments can grow while exerting flexural or tensile force on the motile surface. Moreover, stochastic simulations of the model reproduce the signature motions of Listeria. This elongation motor, which we term actoclampin, exploits actin's intrinsic ATPase activity to provide a simple, high-fidelity enzymatic reaction cycle for force production that does not require elongating filaments to dissociate from the motile surface. This mechanism may operate whenever actin polymerization is called upon to generate the forces that drive cell crawling or intracellular organelle motility. PMID:11806905

  20. Accurate simulation dynamics of microscopic filaments using ``caterpillar'' Oseen hydrodynamics

    NASA Astrophysics Data System (ADS)

    Bailey, A. G.; Lowe, C. P.; Pagonabarraga, I.; Lagomarsino, M. Cosentino

    2009-10-01

    Microscopic semiflexible filaments suspended in a viscous fluid are widely encountered in biophysical problems. The classic example is the flagella used by microorganisms to generate propulsion. Simulating the dynamics of these filaments numerically is complicated because of the coupling between the motion of the filament and that of the surrounding fluid. An attractive idea is to simplify this coupling by modeling the fluid motion by using Stokeslets distributed at equal intervals along the model filament. We show that, with an appropriate choice of the hydrodynamic radii, one can recover accurate hydrodynamic behavior of a filament with a finite cross section without requiring an explicit surface. This is true, however, only if the hydrodynamic radii take specific values and that they differ in the parallel and perpendicular directions leading to a caterpillarlike hydrodynamic shape. Having demonstrated this, we use the model to compare with analytic theory of filament deformation and rotation in the small deformation limit. Generalization of the methodology, including application to simulations using the Rotne-Prager tensor, is discussed.

  1. Real-Time Imaging of Fluorescent Flagellar Filaments

    PubMed Central

    Turner, Linda; Ryu, William S.; Berg, Howard C.

    2000-01-01

    Bacteria swim by rotating flagellar filaments that are several micrometers long, but only about 20 nm in diameter. The filaments can exist in different polymorphic forms, having distinct values of curvature and twist. Rotation rates are on the order of 100 Hz. In the past, the motion of individual filaments has been visualized by dark-field or differential-interference-contrast microscopy, methods hampered by intense scattering from the cell body or shallow depth of field, respectively. We have found a simple procedure for fluorescently labeling cells and filaments that allows recording their motion in real time with an inexpensive video camera and an ordinary fluorescence microscope with mercury-arc or strobed laser illumination. We report our initial findings with cells of Escherichia coli. Tumbles (events that enable swimming cells to alter course) are remarkably varied. Not every filament on a cell needs to change its direction of rotation: different filaments can change directions at different times, and a tumble can result from the change in direction of only one. Polymorphic transformations tend to occur in the sequence normal, semicoiled, curly 1, with changes in the direction of movement of the cell body correlated with transformations to the semicoiled form. PMID:10781548

  2. Mid-infrared laser filaments in the atmosphere

    PubMed Central

    Mitrofanov, A. V.; Voronin, A. A.; Sidorov-Biryukov, D. A.; Pugžlys, A.; Stepanov, E. A.; Andriukaitis, G.; Flöry, T.; Ališauskas, S.; Fedotov, A. B.; Baltuška, A.; Zheltikov, A. M.

    2015-01-01

    Filamentation of ultrashort laser pulses in the atmosphere offers unique opportunities for long-range transmission of high-power laser radiation and standoff detection. With the critical power of self-focusing scaling as the laser wavelength squared, the quest for longer-wavelength drivers, which would radically increase the peak power and, hence, the laser energy in a single filament, has been ongoing over two decades, during which time the available laser sources limited filamentation experiments in the atmosphere to the near-infrared and visible ranges. Here, we demonstrate filamentation of ultrashort mid-infrared pulses in the atmosphere for the first time. We show that, with the spectrum of a femtosecond laser driver centered at 3.9 μm, right at the edge of the atmospheric transmission window, radiation energies above 20 mJ and peak powers in excess of 200 GW can be transmitted through the atmosphere in a single filament. Our studies reveal unique properties of mid-infrared filaments, where the generation of powerful mid-infrared supercontinuum is accompanied by unusual scenarios of optical harmonic generation, giving rise to remarkably broad radiation spectra, stretching from the visible to the mid-infrared. PMID:25687621

  3. Comparison of morphogenetic networks of filamentous fungi and yeast.

    PubMed

    Wendland, J

    2001-11-01

    Fungi generally display either of two growth modes, yeast-like or filamentous, whereas dimorphic fungi, upon environmental stimuli, are able to switch between the yeast-like and the filamentous growth mode. Signal transduction pathways have been elucidated in the budding yeast Saccharomyces cerevisiae, establishing a morphogenetic network that links cell-cycle events with cellular morphogenesis. Recent molecular genetic studies in several filamentous fungal model systems revealed key components required for distinct steps from fungal spore germination to the maintenance of polar hyphal growth, mycelium formation, and nuclear division. This allows a mechanistic comparison of yeast-like and hyphal growth and the establishment of a core model morphogenetic network for filamentous growth including signaling via the cAMP pathway, Rho modules, and cell cycle kinases. Appreciating similarities between morphogenetic networks of the unicellular yeasts and the multicellular filamentous fungi will open new research directions, help in isolating the central network components, and ultimately pave the way to elucidate the central differences (of many) that distinguish, e.g., the growth mode of filamentous fungi from that of their yeast-like relatives, the role of cAMP signaling, and nuclear division. PMID:11686673

  4. Mid-infrared laser filaments in the atmosphere.

    PubMed

    Mitrofanov, A V; Voronin, A A; Sidorov-Biryukov, D A; Pugžlys, A; Stepanov, E A; Andriukaitis, G; Flöry, T; Ališauskas, S; Fedotov, A B; Baltuška, A; Zheltikov, A M

    2015-02-17

    Filamentation of ultrashort laser pulses in the atmosphere offers unique opportunities for long-range transmission of high-power laser radiation and standoff detection. With the critical power of self-focusing scaling as the laser wavelength squared, the quest for longer-wavelength drivers, which would radically increase the peak power and, hence, the laser energy in a single filament, has been ongoing over two decades, during which time the available laser sources limited filamentation experiments in the atmosphere to the near-infrared and visible ranges. Here, we demonstrate filamentation of ultrashort mid-infrared pulses in the atmosphere for the first time. We show that, with the spectrum of a femtosecond laser driver centered at 3.9 μm, right at the edge of the atmospheric transmission window, radiation energies above 20 mJ and peak powers in excess of 200 GW can be transmitted through the atmosphere in a single filament. Our studies reveal unique properties of mid-infrared filaments, where the generation of powerful mid-infrared supercontinuum is accompanied by unusual scenarios of optical harmonic generation, giving rise to remarkably broad radiation spectra, stretching from the visible to the mid-infrared.

  5. Optical spectroscopy using gas-phase femtosecond laser filamentation.

    PubMed

    Odhner, Johanan; Levis, Robert

    2014-01-01

    Femtosecond laser filamentation occurs as a dynamic balance between the self-focusing and plasma defocusing of a laser pulse to produce ultrashort radiation as brief as a few optical cycles. This unique source has many properties that make it attractive as a nonlinear optical tool for spectroscopy, such as propagation at high intensities over extended distances, self-shortening, white-light generation, and the formation of an underdense plasma. The plasma channel that constitutes a single filament and whose position in space can be controlled by its input parameters can span meters-long distances, whereas multifilamentation of a laser beam can be sustained up to hundreds of meters in the atmosphere. In this review, we briefly summarize the current understanding and use of laser filaments for spectroscopic investigations of molecules. A theoretical framework of filamentation is presented, along with recent experimental evidence supporting the established understanding of filamentation. Investigations carried out on vibrational and rotational spectroscopy, filament-induced breakdown, fluorescence spectroscopy, and backward lasing are discussed.

  6. Heterocyst placement strategies to maximize the growth of cyanobacterial filaments

    NASA Astrophysics Data System (ADS)

    Brown, Aidan I.; Rutenberg, Andrew D.

    2012-08-01

    Under conditions of limited fixed-nitrogen, some filamentous cyanobacteria develop a regular pattern of heterocyst cells that fix nitrogen for the remaining vegetative cells. We examine three different heterocyst placement strategies by quantitatively modelling filament growth while varying both external fixed-nitrogen and leakage from the filament. We find that there is an optimum heterocyst frequency which maximizes the growth rate of the filament; the optimum frequency decreases as the external fixed-nitrogen concentration increases but increases as the leakage increases. In the presence of leakage, filaments implementing a local heterocyst placement strategy grow significantly faster than filaments implementing random heterocyst placement strategies. With no extracellular fixed-nitrogen, consistent with recent experimental studies of Anabaena sp. PCC 7120, the modelled heterocyst spacing distribution using our local heterocyst placement strategy is qualitatively similar to experimentally observed patterns. As external fixed-nitrogen is increased, the spacing distribution for our local placement strategy retains the same shape, while the average spacing between heterocysts continuously increases.

  7. Septin Filament Formation is Essential in Budding Yeast

    PubMed Central

    McMurray, Michael A.; Bertin, Aurelie; Garcia, Galo; Lam, Lisa; Nogales, Eva; Thorner, Jeremy

    2011-01-01

    SUMMARY Septins are GTP-binding proteins that form ordered, rod-like multimeric complexes and polymerize into filaments, but how such supramolecular structure is related to septin function was unclear. In Saccharomyces cerevisiae, four septins form an apolar hetero-octamer (Cdc11–Cdc12–Cdc3–Cdc10–Cdc10–Cdc3–Cdc12–Cdc11) that associates end-to-end to form filaments. We show that septin filament assembly displays previously unanticipated plasticity. Cells lacking Cdc10 or Cdc11 are able to divide because the now-exposed subunits (Cdc3 or Cdc12, respectively) retain an ability to homodimerize via their so-called G interface, thereby allowing for filament assembly. In such cdc10Δ and cdc11Δ cells, the remaining septins, like wild-type complexes, localize to the cortex at the bud neck and compartmentalize non-septin factors, consistent with a diffusion barrier composed of continuous filaments in intimate contact with the plasma membrane. Conversely, Cdc10 or Cdc11 mutants that cannot self-associate, but “cap” Cdc3 or Cdc12, respectively, prevent filament formation, block cortical localization, and kill cells. PMID:21497764

  8. Filamentation characteristics of focused fs pulses in atmosphere

    NASA Astrophysics Data System (ADS)

    Sreeja, S.; Kumar, V. Rakesh; Leela, Ch.; Radhakrishnan, P.; Tewari, Surya P.; Venugopal Rao, S.; Kiran, P. Prem

    2012-06-01

    We present the experimental investigations on the filament characteristics of sharply focused fs pulses (800 nm, 45 fs, 1 kHz) in air. Pulses with input powers in 3-12.2 PCr range were focused using three different focusing geometries f/#10, f/#15 and f/#20 corresponding to numerical apertures (NA) of 0.05, 0.033 and 0.025, respectively. The dynamics of filaments were observed via direct imaging of the entire reaction zone. The length of the filament has decreased with increasing NA from 0.025 to 0.05, while, the filament width has increased. For a given focusing geometry, the filament length and width increased with increasing power. However with higher NA, the length and width were observed to saturate at higher input powers. With the highest NA of 0.05 and higher input powers used in the current study, the presence of coherently interacting multiple filaments either resulting in a fusion or exchange of power.

  9. Atomic View of Filament Growth in Electrochemical Memristive Elements

    PubMed Central

    Lv, Hangbing; Xu, Xiaoxin; Sun, Pengxiao; Liu, Hongtao; Luo, Qing; Liu, Qi; Banerjee, Writam; Sun, Haitao; Long, Shibing; Li, Ling; Liu, Ming

    2015-01-01

    Memristive devices, with a fusion of memory and logic functions, provide good opportunities for configuring new concepts computing. However, progress towards paradigm evolution has been delayed due to the limited understanding of the underlying operating mechanism. The stochastic nature and fast growth of localized conductive filament bring difficulties to capture the detailed information on its growth kinetics. In this work, refined programming scheme with real-time current regulation was proposed to study the detailed information on the filament growth. By such, discrete tunneling and quantized conduction were observed. The filament was found to grow with a unit length, matching with the hopping conduction of Cu ions between interstitial sites of HfO2 lattice. The physical nature of the formed filament was characterized by high resolution transmission electron microscopy. Copper rich conical filament with decreasing concentration from center to edge was identified. Based on these results, a clear picture of filament growth from atomic view could be drawn to account for the resistance modulation of oxide electrolyte based electrochemical memristive elements. PMID:26293982

  10. Oriented thick and thin filaments in Amoeba proteus.

    PubMed

    Rinaldi, R A; Hrebenda, B

    1975-07-01

    Actin and myosin filaments as a foundation of contractile systems are well established from ameba to man (3). Wolpert et al. (19) isolated by differential centrifugation from Amoeba proteus a motile fraction composed of filaments which moved upon the addition of ATP. Actin filaments are found in amebas (1, 12, 13) which react with vertebrate heavy meromyosin (HMM), forming arrowhead complexes as vertebrate actin (3, 9), and are prominent within the ectoplasmic tube where some of them are attached to the plasmalemma (1, 12). Thick and thin filaments possessing the morphological characteristics of myosin and actin have been obtained from isolated ameba cytoplasm (18, 19). In addition, there are filaments exhibiting ATPase activity in amebas which react with actin (12, 16, 17). However, giant ameba (Chaos-proteus) shapes are difficult to preserve, and the excellent contributions referred to above are limited by visible distortions occurring in the amebas (rounding up, pseudopods disappearing, and cellular organelles swelling) upon fixation. Achievement of normal ameboid shape in recent glycerination work (15) led us to attempt other electron microscope fixation techniques, resulting in a surprising preservation of A. proteus with a unique orientation of thick and thin filaments in the ectoplasmic region.

  11. A dynamic model of filament eruptions and two ribbon flares

    NASA Technical Reports Server (NTRS)

    Kuin, N. Paul M.; Martens, Piet C. H.

    1986-01-01

    Two basically different models for the filament equilibrium by Kippenhahn and Schluter (1957) and Kuperus and Raadu (1974) have appeared in the literature. A further analyses by van Tend and Kuperus (1978) added the force due to the horizontal component of the background field to the Kuperus and Raadu model. In order to obtain a better model which actually describes these phenomena, the evolution of the filament has to be considered in detail. A first attempt was recently presented by Kaastra. Kaastra did not formulate the precise energy balance equations for the problem, as is done in the present work. In the present model not only the force balance, but also the energy balance of the filament is taken into account. Thus a fully closed system of equations is obtained, that describes the evolution of the filament, first in force equilibrium during the current build-up phase, then in the non-equilibrium phase before the eruption, and the eruption itself. A neutral point appears above the photospheric surface in the non-equilibrium phase, but long before the eruption. It was found that although the filament itself may be in non-equilibrium, the evolution may still be slow up to the height where the eruption takes place. The eruption of the filament itself causes a large induced electric field at the neutral point which leads to the observed flare phenomena.

  12. Model-based analysis of keratin intermediate filament assembly

    NASA Astrophysics Data System (ADS)

    Martin, Ines; Leitner, Anke; Walther, Paul; Herrmann, Harald; Marti, Othmar

    2015-09-01

    The cytoskeleton of epithelial cells consists of three types of filament systems: microtubules, actin filaments and intermediate filaments (IFs). Here, we took a closer look at type I and type II IF proteins, i.e. keratins. They are hallmark constituents of epithelial cells and are responsible for the generation of stiffness, the cellular response to mechanical stimuli and the integrity of entire cell layers. Thereby, keratin networks constitute an important instrument for cells to adapt to their environment. In particular, we applied models to characterize the assembly of keratin K8 and K18 into elongated filaments as a means for network formation. For this purpose, we measured the length of in vitro assembled keratin K8/K18 filaments by transmission electron microscopy at different time points. We evaluated the experimental data of the longitudinal annealing reaction using two models from polymer chemistry: the Schulz-Zimm model and the condensation polymerization model. In both scenarios one has to make assumptions about the reaction process. We compare how well the models fit the measured data and thus determine which assumptions fit best. Based on mathematical modelling of experimental filament assembly data we define basic mechanistic properties of the elongation reaction process.

  13. Evolution of filamentous bacteria during urban wastewater treatment by MBR.

    PubMed

    Parada-Albarracín, J A; Marin, E; Pérez, J I; Moreno, B; Gómez, M A

    2012-01-01

    Evolution of filamentous bacteria in two full-scale experimental MBR systems (microfiltration and ultrafiltration) was studied during two years. Sludge Retention Time (SRT) and Hydraulic Retention Time (HRT) were modified and acted as variables, together with temperature and variation in loading. With SRT values between 20 and 35 d and HRT between 31 and 40 h, both MBR systems presented a high density of filamentous bacteria, according to the Filamentous Index (FI) and Simplified Technique of Filamentous Count (STFC). Highest density was achieved when contaminant loads were high and temperature was low. However, the elevated presence of filamentous bacteria did not affect the quality of effluent or the permeability of the membranes. Nocardioform bacteria showed a high degree of adaptation to the characteristics of the system. Predominance of Nocardioforms gave rise to isolated episodes of massive growth at temperatures between 15 and 20°C, which in turn caused episodes of intense foaming whose most significant consequence was a loss in biomass, leading to a slight increase in transmembrane pressure. In the light of these results, FI and STFC should not be considered as suitable tools for predicting operational problems deriving from filamentous bacteria in MBR systems, which could be prevented through identification. PMID:22423993

  14. Unconventional actin conformations localize on intermediate filaments in mitosis

    SciTech Connect

    Hubert, Thomas; Vandekerckhove, Joel; Gettemans, Jan

    2011-03-04

    Research highlights: {yields} Unconventional actin conformations colocalize with vimentin on a cage-like structure in metaphase HEK 293T cells. {yields} These conformations are detected with the anti-actin antibodies 1C7 ('lower dimer') and 2G2 ('nuclear actin'), but not C4 (monomeric actin). {yields} Mitotic unconventional actin cables are independent of filamentous actin or microtubules. {yields} Unconventional actin colocalizes with vimentin on a nocodazole-induced perinuclear dense mass of cables. -- Abstract: Different structural conformations of actin have been identified in cells and shown to reside in distinct subcellular locations of cells. In this report, we describe the localization of actin on a cage-like structure in metaphase HEK 293T cells. Actin was detected with the anti-actin antibodies 1C7 and 2G2, but not with the anti-actin antibody C4. Actin contained in this structure is independent of microtubules and actin filaments, and colocalizes with vimentin. Taking advantage of intermediate filament collapse into a perinuclear dense mass of cables when microtubules are depolymerized, we were able to relocalize actin to such structures. We hypothesize that phosphorylation of intermediate filaments at mitosis entry triggers the recruitment of different actin conformations to mitotic intermediate filaments. Storage and partition of the nuclear actin and antiparallel 'lower dimer' actin conformations between daughter cells possibly contribute to gene transcription and transient actin filament dynamics at G1 entry.

  15. Dynamics of filamentous viral RNPs prior to egress.

    PubMed

    Santangelo, Philip J; Bao, Gang

    2007-01-01

    The final step in the maturation of paramyxoviruses, orthomyxoviruses and viruses of several other families, entails the budding of the viral nucleocapsid through the plasma membrane of the host cell. Many medically important viruses, such as influenza, parainfluenza, respiratory syncytial virus (RSV) and Ebola, can form filamentous particles when budding. Although filamentous virions have been previously studied, details of how viral filaments bud from the plasma membrane remain largely unknown. Using molecular beacon (MB)-fluorescent probes to image the viral genomic RNA (vRNA) of human RSV (hRSV) in live Vero cells, the dynamics of assembled viral filaments was observed to consist of three primary types of motion prior to egress from the plasma membrane: (i) filament projection and rotation, (ii) migration and (iii) non-directed motion. In addition, from information gained by imaging the 3D distribution of cellular vRNA, observing and characterizing vRNA dynamics, imaging vRNA/Myosin Va colocalization, and studying the effects of cytochalasin D (actin depolymerizing agent) exposure, a model for filamentous virion egress is presented.

  16. Role of streams in myxobacteria aggregate formation

    NASA Astrophysics Data System (ADS)

    Kiskowski, Maria A.; Jiang, Yi; Alber, Mark S.

    2004-10-01

    Cell contact, movement and directionality are important factors in biological development (morphogenesis), and myxobacteria are a model system for studying cell-cell interaction and cell organization preceding differentiation. When starved, thousands of myxobacteria cells align, stream and form aggregates which later develop into round, non-motile spores. Canonically, cell aggregation has been attributed to attractive chemotaxis, a long range interaction, but there is growing evidence that myxobacteria organization depends on contact-mediated cell-cell communication. We present a discrete stochastic model based on contact-mediated signaling that suggests an explanation for the initialization of early aggregates, aggregation dynamics and final aggregate distribution. Our model qualitatively reproduces the unique structures of myxobacteria aggregates and detailed stages which occur during myxobacteria aggregation: first, aggregates initialize in random positions and cells join aggregates by random walk; second, cells redistribute by moving within transient streams connecting aggregates. Streams play a critical role in final aggregate size distribution by redistributing cells among fewer, larger aggregates. The mechanism by which streams redistribute cells depends on aggregate sizes and is enhanced by noise. Our model predicts that with increased internal noise, more streams would form and streams would last longer. Simulation results suggest a series of new experiments.

  17. Experimental study of infrared filaments under different initial conditions

    NASA Astrophysics Data System (ADS)

    Mirell, Daniel Joseph

    In 1964, four years after the first working laser was constructed, long skinny damage tracks and fluorescence trails were seen inside of certain transparent media that were excited by intense light pulses [1]. What was so remarkable about these features was the narrowness of the spatial profile and their long propagation length in the beam in concert with the very high intensity of the light that would be necessary to produce them. A purely linear model of light propagation through such media was insufficient to explain the results of these experiments and hence a new area of nonlinear optics, latex coined filamentation (to describe the length, slimness, and intensity of the light field), was born. Filament studies begin with a medium that has a nonlinear index of refraction, n¯2, that interacts with an intense beam of light so as to cause it to self-focus. The n¯2 of liquid and solid transparent media is much higher than the n¯ 2 of gases and therefore a much higher intensity of laser source would need to be invented to begin the study of filaments in air. With the advent of the Ti-Sapphire Kerr-lens modelocked laser [2], working in combination with the development of the chirped pulse amplifier system in the mid-1990's, light intensities sufficient to produce filaments in air was realized. Since that time much experimental and theoretical work has been done to better understand some of the additional complexities that arise specifically in the filamentation of light in air using several different wavelengths (UV to IR) and pulsewidths (femto- to pico-seconds). Many theoretical models exist each with a different emphasis on the various physical mechanisms that may produce the features experimentally observed in filaments. The experimental work has sought to give the theoretician better data on some of the properties of filaments such as the: (a) spatial and temporal structure of the beam and of the produced plasma (that arises due to the high intensity light

  18. Filament fragmentation in high-mass star formation

    NASA Astrophysics Data System (ADS)

    Beuther, H.; Ragan, S. E.; Johnston, K.; Henning, Th.; Hacar, A.; Kainulainen, J. T.

    2015-12-01

    Context. Filamentary structures in the interstellar medium are crucial ingredients of the star formation process. They fragment to form individual star-forming cores, and at the same time they may also funnel gas toward the central gas cores, providing an additional gas reservoir. Aims: We want to resolve the length scales for filament formation and fragmentation (resolution ≤0.1 pc), in particular the Jeans length and cylinder fragmentation scale. Methods: We have observed the prototypical high-mass star-forming filament IRDC 18223 with the Plateau de Bure Interferometer (PdBI) in the 3.2 mm continuum and N2H+(1-0) line emission in a ten-field mosaic at a spatial resolution of ~ 4'' (~14 000 au). Results: The dust continuum emission resolves the filament into a chain of at least 12 relatively regularly spaced cores. The mean separation between cores is ~0.40(± 0.18) pc. While this is approximately consistent with the fragmentation of an infinite, isothermal, and gravitationally bound gas cylinder, a high mass-to-length ratio of M/l ≈ 1000 M⊙ pc-1 requires additional turbulent and/or magnetic support against radial collapse of the filament. The N2H+(1-0) data reveal a velocity gradient perpendicular to the main filament. Although rotation of the filament cannot be excluded, the data are also consistent with the main filament being comprised of several velocity-coherent subfilaments. Furthermore, this velocity gradient perpendicular to the filament resembles results toward Serpens south that are interpreted as signatures of filament formation within magnetized and turbulent sheet-like structures. Lower-density gas tracers ([CI] and C18O) reveal a similar red- and blueshifted velocity structure on scales around 60'' east and west of the filament. This may tentatively be interpreted as a signature of the large-scale cloud and the smaller scale filament being kinematically coupled. We do not identify a velocity gradient along the axis of the filament. This may

  19. Micromechanical properties of keratin intermediate filament networks

    PubMed Central

    Sivaramakrishnan, Sivaraj; DeGiulio, James V.; Lorand, Laszlo; Goldman, Robert D.; Ridge, Karen M.

    2008-01-01

    Keratin intermediate filaments (KIFs) form cytoskeletal KIF networks that are essential for the structural integrity of epithelial cells. However, the mechanical properties of the in situ network have not been defined. Particle-tracking microrheology (PTM) was used to obtain the micromechanical properties of the KIF network in alveolar epithelial cells (AECs), independent of other cytoskeletal components, such as microtubules and microfilaments. The storage modulus (G′) at 1 Hz of the KIF network decreases from the perinuclear region (335 dyn/cm2) to the cell periphery (95 dyn/cm2), yielding a mean value of 210 dyn/cm2. These changes in G′ are inversely proportional to the mesh size of the network, which increases ≈10-fold from the perinuclear region (0.02 μm2) to the cell periphery (0.3 μm2). Shear stress (15 dyn/cm2 for 4 h) applied across the surface of AECs induces a more uniform distribution of KIF, with the mesh size of the network ranging from 0.02 μm2 near the nucleus to only 0.04 μm2 at the cell periphery. This amounts to a 40% increase in the mean G′. The storage modulus of the KIF network in the perinuclear region accurately predicts the shear-induced deflection of the cell nucleus to be 0.87 ± 0.03 μm. The high storage modulus of the KIF network, coupled with its solid-like rheological behavior, supports the role of KIF as an intracellular structural scaffold that helps epithelial cells to withstand external mechanical forces. PMID:18199836

  20. Regulation of penicillin biosynthesis in filamentous fungi.

    PubMed

    Brakhage, Axel A; Spröte, Petra; Al-Abdallah, Qusai; Gehrke, Alexander; Plattner, Hans; Tüncher, André

    2004-01-01

    The beta-lactam antibiotic penicillin is one of the mainly used antibiotics for the therapy of infectious diseases. It is produced as end product by some filamentous fungi only, most notably by Aspergillus (Emericella) nidulans and Penicillium chrysogenum. The penicillin biosynthesis is catalysed by three enzymes which are encoded by the following three genes: acvA (pcbAB), ipnA (pcbC) and aatA (penDE). The genes are organised into a gene cluster. Although the production of secondary metabolites as penicillin is not essential for the direct survival of the producing organisms, several studies indicated that the penicillin biosynthesis genes are controlled by a complex regulatory network, e.g. by the ambient pH, carbon source, amino acids, nitrogen etc. A comparison with the regulatory mechanisms (regulatory proteins and DNA elements) involved in the regulation of genes of primary metabolism in lower eukaryotes is thus of great interest. This has already led to the elucidation of new regulatory mechanisms. Positively acting regulators have been identified such as the pH dependent transcriptional regulator PACC, the CCAAT-binding complex AnCF and seem also to be represented by recessive trans-acting mutations of A. nidulans (prgA1, prgB1, npeE1) and R chrysogenum (carried by mutants Npe2 and Npe3). In addition, repressors like AnBH1 and VeA are involved in the regulation. Furthermore, such investigations have contributed to the elucidation of signals leading to the production of penicillin and can be expected to have a major impact on rational strain improvement programs.