Lumber grades from Douglas-fir peeler logs.

Treesearch

E.E. Matson

1952-01-01

Sawmill companies often must decide whether it is more economical to sort and sell peeler logs than to cut them into lumber. If the mill owners have reliable data on the grade of lumber that can be expected from these logs, they will be better prepared to make the decision. The Pacific Northwest Forest and Range Experiment Station has made several lumber grade recovery...

Advanced sorting technologies for optimal wood products and woody biomass utilization

Treesearch

Xiping Wang

2012-01-01

Forest materials represent great potential for advancing our goals in the 21st century for sustainable building, energy independence, and carbon sequestration. A critical component of an improved system for producing bioproducts and bioenergr from forest materials is the ability to sort trees, stems, and logs into end-product categories that represent their highest...

Research of grasping algorithm based on scara industrial robot

NASA Astrophysics Data System (ADS)

Peng, Tao; Zuo, Ping; Yang, Hai

2018-04-01

As the tobacco industry grows, facing the challenge of the international tobacco giant, efficient logistics service is one of the key factors. How to complete the tobacco sorting task of efficient economy is the goal of tobacco sorting and optimization research. Now the cigarette distribution system uses a single line to carry out the single brand sorting task, this article adopts a single line to realize the cigarette sorting task of different brands. Using scara robot special algorithm for sorting and packaging, the optimization scheme significantly enhances the indicators of smoke sorting system. Saving labor productivity, obviously improve production efficiency.

Ultrasonic Inspection of Wooden Pallet Parts for Grading and Sorting

Treesearch

Daniel L. Schmoldt; Michael Morrone; John C. Duke

1994-01-01

Wooden pallets are the largest single use of sawn hardwood logs in the USA. Unfortunately, millions of pallets are discarded into landfills annually. High quality wooden pallets, on the other hand, promote longevity and re-use. To build durable pallets requires high quality parts. Manual grading and sorting of pallet parts is not feasible, however, so we are developing...

Diameter sensors for tree-length harvesting systems

Treesearch

T.P. McDonald; Robert B. Rummer; T.E. Grift

2003-01-01

Most cut-to-length (CTL) harvesters provide sensors for measuring diameter of trees as they are cut and processed. Among other uses, this capability provides a data collection tool for marketing of logs in real time. Logs can be sorted and stacked based on up-to-date market information, then transportation systems optimized to route wood to proper destinations at...

Using recurrence plot analysis for software execution interpretation and fault detection

NASA Astrophysics Data System (ADS)

Mosdorf, M.

2015-09-01

This paper shows a method targeted at software execution interpretation and fault detection using recurrence plot analysis. In in the proposed approach recurrence plot analysis is applied to software execution trace that contains executed assembly instructions. Results of this analysis are subject to further processing with PCA (Principal Component Analysis) method that simplifies number coefficients used for software execution classification. This method was used for the analysis of five algorithms: Bubble Sort, Quick Sort, Median Filter, FIR, SHA-1. Results show that some of the collected traces could be easily assigned to particular algorithms (logs from Bubble Sort and FIR algorithms) while others are more difficult to distinguish.

High-temperature geothermal cableheads

NASA Astrophysics Data System (ADS)

Coquat, J. A.; Eifert, R. W.

1981-11-01

Two high temperature, corrosion resistant logging cable heads which use metal seals and a stable fluid to achieve proper electrical terminations and cable sonde interfacings are described. A tensile bar provides a calibrated yield point, and a cone assembly anchors the cable armor to the head. Electrical problems of the sort generally ascribable to the cable sonde interface were absent during demonstration hostile environment loggings in which these cable heads were used.

36 CFR 223.160 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-07-01

... an ocean-going vessel. An export yard or pond is an area where sorting and/or bundling of logs for..., or the minimum piece specification set forth in the timber sale contract, in material meeting the...

Two-Dimensional Parson's Puzzles: The Concept, Tools, and First Observations

ERIC Educational Resources Information Center

Ihantola, Petri; Karavirta, Ville

2011-01-01

Parson's programming puzzles are a family of code construction assignments where lines of code are given, and the task is to form the solution by sorting and possibly selecting the correct code lines. We introduce a novel family of Parson's puzzles where the lines of code need to be sorted in two dimensions. The vertical dimension is used to order…

Perspectives for on-line analysis of bauxite by neutron irradiation

NASA Astrophysics Data System (ADS)

Beurton, Gabriel; Ledru, Bertrand; Letourneur, Philippe

1995-03-01

The interest in bauxite as a major source of alumina results in a strong demand for on-line instrumentation suitable for sorting, blending, and processing operations at the bauxite mine and for monitoring instrumentation in the Bayer process. The results of laboratory experiments based on neutron interactions with bauxite are described. The technique was chosen in order to overcome the problem of spatial heterogeneity in bulk mineral analysis. The evaluated elements contributed to approximately 99.5% of the sample weight. In addition, the measurements provide valuable information on physical parameters such as density, hygrometry, and material flow. Using a pulsed generator, the analysis system offers potential for on-line measurements (borehole logging or conveyor belt). An overall description of the experimental set-up is given. The experimental data include measurements of natural radioactivity, delayed radioactivity induced by activation, and prompt gamma rays following neutron reaction. In situ applications of neutron interactions provide continuous analysis and produce results which are more statistically significant. The key factors contributing to advances in industrial applications are the development of high count rate gamma spectroscopy and computational tools to design measurement systems and interpret their results.

Permeability-porosity relationships in sedimentary rocks

USGS Publications Warehouse

Nelson, Philip H.

1994-01-01

In many consolidated sandstone and carbonate formations, plots of core data show that the logarithm of permeability (k) is often linearly proportional to porosity (??). The slope, intercept, and degree of scatter of these log(k)-?? trends vary from formation to formation, and these variations are attributed to differences in initial grain size and sorting, diagenetic history, and compaction history. In unconsolidated sands, better sorting systematically increases both permeability and porosity. In sands and sandstones, an increase in gravel and coarse grain size content causes k to increase even while decreasing ??. Diagenetic minerals in the pore space of sandstones, such as cement and some clay types, tend to decrease log(k) proportionately as ?? decreases. Models to predict permeability from porosity and other measurable rock parameters fall into three classes based on either grain, surface area, or pore dimension considerations. (Models that directly incorporate well log measurements but have no particular theoretical underpinnings from a fourth class.) Grain-based models show permeability proportional to the square of grain size times porosity raised to (roughly) the fifth power, with grain sorting as an additional parameter. Surface-area models show permeability proportional to the inverse square of pore surface area times porosity raised to (roughly) the fourth power; measures of surface area include irreducible water saturation and nuclear magnetic resonance. Pore-dimension models show permeability proportional to the square of a pore dimension times porosity raised to a power of (roughly) two and produce curves of constant pore size that transgress the linear data trends on a log(k)-?? plot. The pore dimension is obtained from mercury injection measurements and is interpreted as the pore opening size of some interconnected fraction of the pore system. The linear log(k)-?? data trends cut the curves of constant pore size from the pore-dimension models, which shows that porosity reduction is always accompanied by a reduction in characteristic pore size. The high powers of porosity of the grain-based and surface-area models are required to compensate for the inclusion of the small end of the pore size spectrum.

SAHARA: A package of PC computer programs for estimating both log-hyperbolic grain-size parameters and standard moments

NASA Astrophysics Data System (ADS)

Christiansen, Christian; Hartmann, Daniel

This paper documents a package of menu-driven POLYPASCAL87 computer programs for handling grouped observations data from both sieving (increment data) and settling tube procedures (cumulative data). The package is designed deliberately for use on IBM-compatible personal computers. Two of the programs solve the numerical problem of determining the estimates of the four (main) parameters of the log-hyperbolic distribution and their derivatives. The package also contains a program for determining the mean, sorting, skewness. and kurtosis according to the standard moments. Moreover, the package contains procedures for smoothing and grouping of settling tube data. A graphic part of the package plots the data in a log-log plot together with the estimated log-hyperbolic curve. Along with the plot follows all estimated parameters. Another graphic option is a plot of the log-hyperbolic shape triangle with the (χ,ζ) position of the sample.

Data for four geologic test holes in the Sacramento Valley, California

USGS Publications Warehouse

Berkstresser, C.F.; French, J.J.; Schaal, M.E.

1985-01-01

The report provides geological and geophysical data for four of seven test holes drilled as a part of the Central Valley Aquifer Project, which is part of the Regional Aquifer Systems Analysis. The holes were drilled with a rotary well drilling machine to depths of 900 feet in the southwestern part of the Sacramento Valley in Solano and Yolo Counties. Geologic data for each well include lithology, texture, color, character of the contact, sorting, rounding, and cementation, determined from cuttings, cores, and sidewall covers. Fifty cores, 3 feet long, were obtained from each hole, and from eight to fourteen sidewall cores were collected. Geophysical data include a dual-induction log, spherically focused log (SFL), compensated neutron-formation density log, gamma-ray log, and a caliper log. These data are presented in four tables and on four plates. (USGS)

VizieR Online Data Catalog: Astron low resolution UV spectra (Boyarchuk+, 1994)

NASA Astrophysics Data System (ADS)

Boyarchuk, A. A.

2017-05-01

Astron was a Soviet spacecraft launched on 23 March 1983, and it was operational for eight years as the largest ultraviolet space telescope during its lifetime. Astron's payload consisted of an 80 cm ultraviolet telescope Spica and an X-ray spectroscope. We present 159 low resolution spectra of stars obtained during the Astron space mission (Tables 4, 5; hereafter table numbers in Boyarchuk et al. 1994 are given). Table 4 (observational log, logs.dat) contains data on 142 sessions for 90 stars (sorted in ascending order of RA), where SED was obtained by scanning method, and then data on 17 sessions for 15 stars (also sorted in ascending order of RA), where multicolor photometry was done. Kilpio et al. (2016, Baltic Astronomy 25, 23) presented results of the comparison of Astron data to the modern UV stellar data, discussed Astron precision and accuracy, and made some conclusions on potential application areas of these data. Also 34 sessions of observations of 27 stellar systems (galaxies and globular clusters) are presented. Observational log was published in Table 10 and data were published in Table 11, respectively. Also 16 sessions of observations of 12 nebulae (Table 12 for observational log and Table 13 for data themselves) are presented. Background radiation intensity data (Table 14) are presented in Table 15. At last, data on comets are presented in different forms. We draw your attention that observational data for stars, stellar systems, nebulae and comets are expressed in log [erg/s/cm^2/A], while for comets data 10E-13 erg/s/cm^2/A units are used, hydroxyl band photometric data for comets are expressed in log [erg/s/cm^2], and for the background data it is radiation intensity expressed in log [erg/s/cm^2/A/sr]. Scanned (PDF version of) Boyarchuk et al. (1994) book is available at http://www.inasan.ru/~astron/astron.pdf (12 data files).

Self-Sorting of Bidispersed Colloidal Particles Near Contact Line of an Evaporating Sessile Droplet.

PubMed

Patil, Nagesh D; Bhardwaj, Rajneesh; Sharma, Atul

2018-06-13

Here, we investigate deposit patterns and associated morphology formed after the evaporation of an aqueous droplet containing mono- and bidispersed colloidal particles. In particular, the combined effect of substrate heating and particle diameter is investigated. We employ high-speed visualization, optical microscopy, and scanning electron microscopy to characterize the evaporating droplets, particle motion, and deposit morphology, respectively. In the context of monodispersed colloidal particles, an inner deposit and a typical ring form for smaller and larger particles, respectively, on a nonheated surface. The formation of the inner deposit is attributed to early depinning of the contact line, explained by a mechanistic model based on the balance of several forces acting on a particle near the contact line. At larger substrate temperature, a thin ring with inner deposit forms, explained by the self-pinning of the contact line and advection of the particles from the contact line to the center of the droplet due to the Marangoni flow. In the context of bidispersed colloidal particles, self-sorting of the colloidal particles within the ring occurs at larger substrate temperature. The smaller particles deposit at the outermost edge compared to the larger particles, and this preferential deposition in a stagnation region near the contact line is due to the spatially varying height of the liquid-gas interface above the substrate. The sorting occurs at a smaller ratio of the diameters of the smaller and larger particles. At larger substrate temperature and larger ratio, the particles do not get sorted and mix into each other. Our measurements show that there exists a critical substrate temperature as well as a diameter ratio to achieve the sorting. We propose regime maps on substrate temperature-particle diameter and substrate temperature-diameter ratio plane for mono- and bidispersed solutions, respectively.

Mammarenaviruses deleted from their Z gene are replicative and produce an infectious progeny in BHK-21 cells.

PubMed

Zaza, Amélie D; Herbreteau, Cécile H; Peyrefitte, Christophe N; Emonet, Sébastien F

2018-05-01

Mammarenaviruses bud out of infected cells via the recruitment of the endosomal sorting complex required for transport through late domain motifs localized into their Z protein. Here, we demonstrated that mammarenaviruses lacking this protein can be rescued and are replicative, despite a 3-log reduction in virion production, in BHK-21 cells, but not in five other cell lines. Mutations of putative late domain motifs identified into the viral nucleoprotein resulted in the almost complete abolition of infectious virion production by Z-deleted mammarenaviruses. This result strongly suggested that the nucleoprotein may compensate for the deletion of Z. These observations were primarily obtained using the Lymphocytic choriomeningitis virus, and further confirmed using the Old World Lassa and New World Machupo viruses, responsible of human hemorrhagic fevers. Z-deleted viruses should prove very useful tools to investigate the biology of Mammarenaviruses. Copyright © 2018 Elsevier Inc. All rights reserved.

ANALYSIS/PLOT: a graphics package for use with the SORT/ANALYSIS data bases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sady, C.A.

1983-08-01

This report describes a graphics package that is used with the SORT/ANALYSIS data bases. The data listed by the SORT/ANALYSIS program can be presented in pie, bar, line, or Gantt chart form. Instructions for the use of the plotting program and descriptions of the subroutines are given in the report.

Line-driven disc wind model for ultrafast outflows in active galactic nuclei - scaling with luminosity

NASA Astrophysics Data System (ADS)

Nomura, M.; Ohsuga, K.

2017-03-01

In order to reveal the origin of the ultrafast outflows (UFOs) that are frequently observed in active galactic nuclei (AGNs), we perform two-dimensional radiation hydrodynamics simulations of the line-driven disc winds, which are accelerated by the radiation force due to the spectral lines. The line-driven winds are successfully launched for the range of MBH = 106-9 M⊙ and ε = 0.1-0.5, and the resulting mass outflow rate (dot{M_w}), momentum flux (dot{p_w}), and kinetic luminosity (dot{E_w}) are in the region containing 90 per cent of the posterior probability distribution in the dot{M}_w-Lbol plane, dot{p}_w-Lbol plane, and dot{E}_w-Lbol plane shown in Gofford et al., where MBH is the black hole mass, ε is the Eddington ratio, and Lbol is the bolometric luminosity. The best-fitting relations in Gofford et al., d log dot{M_w}/d log {L_bol}˜ 0.9, d log dot{p_w}/d log {L_bol}˜ 1.2, and d log dot{E_w}/d log {L_bol}˜ 1.5, are roughly consistent with our results, d log dot{M_w}/d log {L_bol}˜ 9/8, d log dot{p_w}/d log {L_bol}˜ 10/8, and d log dot{E_w}/d log {L_bol}˜ 11/8. In addition, our model predicts that no UFO features are detected for the AGNs with ε ≲ 0.01, since the winds do not appear. Also, only AGNs with MBH ≲ 108 M⊙ exhibit the UFOs when ε ∼ 0.025. These predictions nicely agree with the X-ray observations. These results support that the line-driven disc wind is the origin of the UFOs.

Volume recovery, grade yield, and properties of lumber from young-growth sitka spruce and western hemlock in southeast Alaska.

Treesearch

Glenn A. Christensen; Kent R. Julin; Robert J. Ross; Susan. Willits

2002-01-01

Wood volume recovery, lumber grade yield, and mechanical properties of young-growth Sitka spruce (Picea sitchensis (Bong.) Carr.) and western hemlock (Tsuga heterophyla (Raf.) Sarg.)were examined. The sample included trees from commercially thinned and unthinned stands and fluted western hemlock logs obtained from a sort yard....

Lumber stress grades and design properties

Treesearch

David E. Kretschmann; David W. Green

1999-01-01

Lumber sawn from a log, regardless of species and size, is quite variable in mechanical properties. Pieces may differ in strength by several hundred percent. For simplicity and economy in use, pieces of lumber of similar mechanical properties are placed in categories called stress grades, which are characterized by (a) one or more sorting criteria, (b) a set of...

Establishment of optimized MDCK cell lines for reliable efflux transport studies.

PubMed

Gartzke, Dominik; Fricker, Gert

2014-04-01

Madin-Darby canine kidney (MDCK) cells transfected with human MDR1 gene (MDCK-MDR1) encoding for P-glycoprotein (hPgp, ABCB1) are widely used for transport studies to identify drug candidates as substrates of this efflux protein. Therefore, it is necessary to rely on constant and comparable expression levels of Pgp to avoid false negative or positive results. We generated a cell line with homogenously high and stable expression of hPgp through sorting single clones from a MDCK-MDR1 cell pool using fluorescence-activated cell sorting (FACS). To obtain control cell lines for evaluation of cross-interactions with endogenous canine Pgp (cPgp) wild-type cells were sorted with a low expression pattern of cPgp in comparison with the MDCK-MDR1. Expression of other transporters was also characterized in both cell lines by quantitative real-time PCR and Western blot. Pgp function was investigated applying the Calcein-AM assay as well as bidirectional transport assays using (3) H-Digoxin, (3) H-Vinblastine, and (3) H-Quinidine as substrates. Generated MDCK-MDR1 cell lines showed high expression of hPgp. Control MDCK-WT cells were optimized in showing a comparable expression level of cPgp in comparison with MDCK-MDR1 cell lines. Generated cell lines showed higher and more selective Pgp transport compared with parental cells. Therefore, they provide a significant improvement in the performance of efflux studies yielding more reliable results. © 2014 Wiley Periodicals, Inc. and the American Pharmacists Association.

A method for development of a system of identification for Appalachian coal-bearing rocks

USGS Publications Warehouse

Ferm, J.C.; Weisenfluh, G.A.; Smith, G.C.

2002-01-01

The number of observable properties of sedimentary rocks is large and numerous classifications have been proposed for describing them. Some rock classifications, however, may be disadvantageous in situations such as logging rock core during coal exploration programs, where speed and simplicity are the essence. After experimenting with a number of formats for logging rock core in the Appalachian coal fields, a method of using color photographs accompanied by a rock name and numeric code was selected. In order to generate a representative collection of rocks to be photographed, sample methods were devised to produce a representative collection, and empirically based techniques were devised to identify repeatedly recognizable rock types. A number of cores representing the stratigraphic and geographic range of the region were sampled so that every megascopically recognizable variety was included in the collection; the frequency of samples of any variety reflects the frequency with which it would be encountered during logging. In order to generate repeatedly recognizable rock classes, the samples were sorted to display variation in grain size, mineral composition, color, and sedimentary structures. Class boundaries for each property were selected on the basis of existing, widely accepted limits and the precision with which these limits could be recognized. The process of sorting the core samples demonstrated relationships between rock properties and indicated that similar methods, applied to other groups of rocks, could yield more widely applicable field classifications. ?? 2002 Elsevier Science B.V. All rights reserved.

Radiation Response of Cancer Stem-Like Cells From Established Human Cell Lines After Sorting for Surface Markers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Al-Assar, Osama; Muschel, Ruth J.; Mantoni, Tine S.

2009-11-15

Purpose: A subpopulation of cancer stem-like cells (CSLC) is hypothesized to exist in different cancer cell lines and to mediate radioresistance in solid tumors. Methods and Materials: Cells were stained for CSLC markers and sorted (fluorescence-activated cell sorter/magnetic beads) to compare foci and radiosensitivity of phosphorylated histone H2AX at Ser 139 (gamma-H2AX) in sorted vs. unsorted populations in eight cell lines from different organs. CSLC properties were examined using anchorage-independent growth and levels of activated Notch1. Validation consisted of testing tumorigenicity and postirradiation enrichment of CSLC in xenograft tumors. Results: The quantity of CSLC was generally in good agreement withmore » primary tumors. CSLC from MDA-MB-231 (breast) and Panc-1 and PSN-1 (both pancreatic) cells had fewer residual gamma-H2AX foci than unsorted cells, pointing to radioresistance of CSLC. However, only MDA-MB-231 CSLC were more radioresistant than unsorted cells. Furthermore, MDA-MB-231 CSLC showed enhanced anchorage-independent growth and overexpression of activated Notch1 protein. The expression of cancer stem cell surface markers in the MDA-MB-231 xenograft model was increased after exposure to fractionated radiation. In contrast to PSN-1 cells, a growth advantage for MDA-MB-231 CSLC xenograft tumors was found compared to tumors arising from unsorted cells. Conclusions: CSLC subpopulations showed no general radioresistant phenotype, despite the quantities of CSLC subpopulations shown to correspond relatively well in other reports. Likewise, CSLC characteristics were found in some but not all of the tested cell lines. The reported problems in testing for CSLC in cell lines may be overcome by additional techniques, beyond sorting for markers.« less

Chapter 3:Sorting red maple logs for structural quality

Treesearch

Xiping Wang

2005-01-01

Nondestructive evaluation (NDE) of wood materials has a long history of application in the wood products industry. Visual grading of lumber is perhaps one of the earliest NDE forms. Visual assessment of a piece of lumber requires the grader to estimate a strength ratio on the basis of observed external defects (USDA 1999). The ratio is used to estimate the strength of...

Stress grades and design properties for lumber, round timber, and ties

Treesearch

David E. Kretschmann

2010-01-01

Round timbers, ties, and lumber sawn from a log, regardless of species and size, are quite variable in mechanical properties. Pieces may differ in strength by several hundred percent. For simplicity and economy in use, pieces of wood of similar mechanical properties are placed in categories called stress grades, which are characterized by (a) one or more sorting...

Premature germination of forest tree seed during natural storage in duff

Treesearch

I. T. Haig

1932-01-01

For some years forest investigators in the Pacific Northwest have been aware of the considerable quantity of tree seed which accumulates in the duff of heavy virgin timber stands and apparently retains its vitality for a few years in a sort of natural cold-storage condition. The major portion of the luxuriant regeneration which frequently follows logging and forest...

Optimal message log reclamation for independent checkpointing

NASA Technical Reports Server (NTRS)

Wang, Yi-Min; Fuchs, W. Kent

1993-01-01

Independent (uncoordinated) check pointing for parallel and distributed systems allows maximum process autonomy but suffers from possible domino effects and the associated storage space overhead for maintaining multiple checkpoints and message logs. In most research on check pointing and recovery, it was assumed that only the checkpoints and message logs older than the global recovery line can be discarded. It is shown how recovery line transformation and decomposition can be applied to the problem of efficiently identifying all discardable message logs, thereby achieving optimal garbage collection. Communication trace-driven simulation for several parallel programs is used to show the benefits of the proposed algorithm for message log reclamation.

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R.

PubMed

Stephens, Timothy G; Bhattacharya, Debashish; Ragan, Mark A; Chan, Cheong Xin

2016-01-01

A frequent bottleneck in interpreting phylogenomic output is the need to screen often thousands of trees for features of interest, particularly robust clades of specific taxa, as evidence of monophyletic relationship and/or reticulated evolution. Here we present PhySortR, a fast, flexible R package for classifying phylogenetic trees. Unlike existing utilities, PhySortR allows for identification of both exclusive and non-exclusive clades uniting the target taxa based on tip labels (i.e., leaves) on a tree, with customisable options to assess clades within the context of the whole tree. Using simulated and empirical datasets, we demonstrate the potential and scalability of PhySortR in analysis of thousands of phylogenetic trees without a priori assumption of tree-rooting, and in yielding readily interpretable trees that unambiguously satisfy the query. PhySortR is a command-line tool that is freely available and easily automatable.

Low power and high accuracy spike sorting microprocessor with on-line interpolation and re-alignment in 90 nm CMOS process.

PubMed

Chen, Tung-Chien; Ma, Tsung-Chuan; Chen, Yun-Yu; Chen, Liang-Gee

2012-01-01

Accurate spike sorting is an important issue for neuroscientific and neuroprosthetic applications. The sorting of spikes depends on the features extracted from the neural waveforms, and a better sorting performance usually comes with a higher sampling rate (SR). However for the long duration experiments on free-moving subjects, the miniaturized and wireless neural recording ICs are the current trend, and the compromise on sorting accuracy is usually made by a lower SR for the lower power consumption. In this paper, we implement an on-chip spike sorting processor with integrated interpolation hardware in order to improve the performance in terms of power versus accuracy. According to the fabrication results in 90nm process, if the interpolation is appropriately performed during the spike sorting, the system operated at the SR of 12.5 k samples per second (sps) can outperform the one not having interpolation at 25 ksps on both accuracy and power.

Bio optofluidics cell sorter: cell-BOCS concept and applications

NASA Astrophysics Data System (ADS)

Roth, Tue; Glückstad, Jesper

2012-03-01

The cell-BOCS is a novel microfluidics based cell-sorting instrument utilizing next generation optical trapping technology developed at the Technical University of Denmark. It is targeted emerging bio-medical research and diagnostics markets where it for certain applications offers a number of advantages over conventional fluorescence activated cell-sorting (FACSTM) technology. Advantages include gentle handling of cells, sterile sorting, easy operation, small footprint and lower cost allowing out-of-core-facility use. Application examples are found within sorting of fragile transfected cells, high value samples and primary cell lines, where traditional FACS technology has limited application due to it's droplet-based approach to cell-sorting. In the diagnostics field, in particular applying the cell-BOCS for isolating pure populations of circulating tumor cells is an area that has generated a lot of interest.

Neural computation of arithmetic functions

NASA Technical Reports Server (NTRS)

Siu, Kai-Yeung; Bruck, Jehoshua

1990-01-01

An area of application of neural networks is considered. A neuron is modeled as a linear threshold gate, and the network architecture considered is the layered feedforward network. It is shown how common arithmetic functions such as multiplication and sorting can be efficiently computed in a shallow neural network. Some known results are improved by showing that the product of two n-bit numbers and sorting of n n-bit numbers can be computed by a polynomial-size neural network using only four and five unit delays, respectively. Moreover, the weights of each threshold element in the neural networks require O(log n)-bit (instead of n-bit) accuracy. These results can be extended to more complicated functions such as multiple products, division, rational functions, and approximation of analytic functions.

High-throughput microfluidic mixing and multiparametric cell sorting for bioactive compound screening.

PubMed

Young, Susan M; Curry, Mark S; Ransom, John T; Ballesteros, Juan A; Prossnitz, Eric R; Sklar, Larry A; Edwards, Bruce S

2004-03-01

HyperCyt, an automated sample handling system for flow cytometry that uses air bubbles to separate samples sequentially introduced from multiwell plates by an autosampler. In a previously documented HyperCyt configuration, air bubble separated compounds in one sample line and a continuous stream of cells in another are mixed in-line for serial flow cytometric cell response analysis. To expand capabilities for high-throughput bioactive compound screening, the authors investigated using this system configuration in combination with automated cell sorting. Peptide ligands were sampled from a 96-well plate, mixed in-line with fluo-4-loaded, formyl peptide receptor-transfected U937 cells, and screened at a rate of 3 peptide reactions per minute with approximately 10,000 cells analyzed per reaction. Cell Ca(2+) responses were detected to as little as 10(-11) M peptide with no detectable carryover between samples at up to 10(-7) M peptide. After expansion in culture, cells sort-purified from the 10% highest responders exhibited enhanced sensitivity and more sustained responses to peptide. Thus, a highly responsive cell subset was isolated under high-throughput mixing and sorting conditions in which response detection capability spanned a 1000-fold range of peptide concentration. With single-cell readout systems for protein expression libraries, this technology offers the promise of screening millions of discrete compound interactions per day.

Mechanically robust microfluidics and bulk wave acoustics to sort microparticles

NASA Astrophysics Data System (ADS)

Dauson, Erin R.; Gregory, Kelvin B.; Greve, David W.; Healy, Gregory P.; Oppenheim, Irving J.

2016-04-01

Sorting microparticles (or cells, or bacteria) is significant for scientific, medical and industrial purposes. Research groups have used lithium niobate SAW devices to produce standing waves, and then to align microparticles at the node lines in polydimethylsiloxane (PDMS, silicone) microfluidic channels. The "tilted angle" (skewed) configuration is a recent breakthrough producing particle trajectories that cross multiple node lines, making it practical to sort particles. However, lithium niobate wafers and PDMS microfluidic channels are not mechanically robust. We demonstrate "tilted angle" microparticle sorting in novel devices that are robust, rapidly prototyped, and manufacturable. We form our microfluidic system in a rigid polymethyl methacrylate (PMMA, acrylic) prism, sandwiched by lead-zirconium-titanate (PZT) wafers, operating in through-thickness mode with inertial backing, that produce standing bulk waves. The overall configuration is compact and mechanically robust, and actuating PZT wafers in through-thickness mode is highly efficient. Moving to this novel configuration introduced new acoustics questions involving internal reflections, but we show experimental images confirming the intended nodal geometry. Microparticles in "tilted angle" devices display undulating trajectories, where deviation from the straight path increases with particle diameter and with excitation voltage to create the mechanism by which particles are sorted. We show a simplified analytical model by which a "phase space" is constructed to characterize effective particle sorting, and we compare our experimental data to the predictions from that simplified model; precise correlation is not expected and is not observed, but the important physical trends from the model are paralleled in the measured particle trajectories.

Assessing the potential for log sort yards to improve financial viability of forest restoration treatments

Treesearch

Woodam Chung; Tyron J. Venn; Dan Loeffler; Greg Jones; Han-Sup Han; Dave E. Calkin

2012-01-01

Forest restoration and fuel reduction treatments have been widely applied in the western United States with the purpose of reducing the size and intensity of wildfires. However, the low value of small-diameter trees produced from such treatments has partly constrained the ability to treat all the areas identified as being in need of treatments. The objective of this...

DataForge: Modular platform for data storage and analysis

NASA Astrophysics Data System (ADS)

Nozik, Alexander

2018-04-01

DataForge is a framework for automated data acquisition, storage and analysis based on modern achievements of applied programming. The aim of the DataForge is to automate some standard tasks like parallel data processing, logging, output sorting and distributed computing. Also the framework extensively uses declarative programming principles via meta-data concept which allows a certain degree of meta-programming and improves results reproducibility.

Power law behavior of RR-interval variability in healthy middle-aged persons, patients with recent acute myocardial infarction, and patients with heart transplants

NASA Technical Reports Server (NTRS)

Bigger, J. T. Jr; Steinman, R. C.; Rolnitzky, L. M.; Fleiss, J. L.; Albrecht, P.; Cohen, R. J.

1996-01-01

BACKGROUND. The purposes of the present study were (1) to establish normal values for the regression of log(power) on log(frequency) for, RR-interval fluctuations in healthy middle-aged persons, (2) to determine the effects of myocardial infarction on the regression of log(power) on log(frequency), (3) to determine the effect of cardiac denervation on the regression of log(power) on log(frequency), and (4) to assess the ability of power law regression parameters to predict death after myocardial infarction. METHODS AND RESULTS. We studied three groups: (1) 715 patients with recent myocardial infarction; (2) 274 healthy persons age and sex matched to the infarct sample; and (3) 19 patients with heart transplants. Twenty-four-hour RR-interval power spectra were computed using fast Fourier transforms and log(power) was regressed on log(frequency) between 10(-4) and 10(-2) Hz. There was a power law relation between log(power) and log(frequency). That is, the function described a descending straight line that had a slope of approximately -1 in healthy subjects. For the myocardial infarction group, the regression line for log(power) on log(frequency) was shifted downward and had a steeper negative slope (-1.15). The transplant (denervated) group showed a larger downward shift in the regression line and a much steeper negative slope (-2.08). The correlation between traditional power spectral bands and slope was weak, and that with log(power) at 10(-4) Hz was only moderate. Slope and log(power) at 10(-4) Hz were used to predict mortality and were compared with the predictive value of traditional power spectral bands. Slope and log(power) at 10(-4) Hz were excellent predictors of all-cause mortality or arrhythmic death. To optimize the prediction of death, we calculated a log(power) intercept that was uncorrelated with the slope of the power law regression line. We found that the combination of slope and zero-correlation log(power) was an outstanding predictor, with a relative risk of > 10, and was better than any combination of the traditional power spectral bands. The combination of slope and log(power) at 10(-4) Hz also was an excellent predictor of death after myocardial infarction. CONCLUSIONS. Myocardial infarction or denervation of the heart causes a steeper slope and decreased height of the power law regression relation between log(power) and log(frequency) of RR-interval fluctuations. Individually and, especially, combined, the power law regression parameters are excellent predictors of death of any cause or arrhythmic death and predict these outcomes better than the traditional power spectral bands.

Suitability of the line intersect method for sampling hardwood logging residues

Treesearch

A. Jeff Martin

1976-01-01

The line intersect method of sampling logging residues was tested in Appalachian hardwoods and was found to provide unbiased estimates of the volume of residue in cubic feet per acre. Thirty-two chains of sample line were established on each of sixteen 1-acre plots on cutover areas in a variety of conditions. Estimates from these samples were then compared to actual...

Preserving and Archiving Astronomical Photographic Plates

NASA Astrophysics Data System (ADS)

Castelaz, M. W.; Cline, J. D.

2005-05-01

Astronomical objects change with time. New observations complement past observations recorded on photographic plates. Analyses of changes provide essential routes to information about an object's formation, constitution and evolution. Preserving a century of photographic plate observations is thus of paramount importance. Plate collections are presently widely dispersed; plates may be stored in poor conditions, and are effectively inaccessible to both researchers and historians. We describe a planned project at Pisgah Astronomical Research Institute to preserve the collections of astronomical plates in the United States by gathering them into a single storage location. Collections will be sorted, cleaned, and cataloged on-line so as to provide access to researchers. Full scientific and historic use of the material then requires the observations themselves to be accessible digitally. The project's goal will be the availability of these data as a unique, fully-maintained scientific and educational resource. The new archive will support trans-disciplinary research such as the chemistry of the Earth's atmosphere, library information science, trends in local weather patterns, and impacts of urbanization on telescope use, while the hand-written observatory logs will be a valuable resource for science historians and biographers.

Comparison of property between two Viking Seismic tapes

NASA Astrophysics Data System (ADS)

Yamamoto, Y.; Yamada, R.

2016-12-01

Tthe restoration work of the seismometer data onboard Viking Lander 2 is still continuing. Originally, the data were processed and archived both in MIT and UTIG separately, and each data is accessible via the Internet today. Their file formats to store the data are different, but both of them are currently readable due to the continuous investigation. However, there is some inconsistency between their data although most of their data are highly consistent. To understand the differences, the knowledge of archiving and off-line processing of spacecraft is required because these differences are caused by the off-line processing.The data processing of spacecraft often requires merge and sort processing of raw data. The merge processing is normally performed to eliminate duplicated data, and the sort processing is performed to fix data order. UTIG did not seem to perform these merge and sort processing. Therefore, the UTIG processed data remain duplication. The MIT processed data did these merge and sort processing, but the raw data sometimes include wrong time tags, and it cannot be fixed strictly after sort processing. Also, the MIT processed data has enough documents to understand metadata, while UTIG data has a brief instruction. Therefore, both of MIT and UTIG data are treated complementary. A better data set can be established using both of them. In this presentation, we would show the method to build a better data set of Viking Lander 2 seismic data.

Glycoprotein production for structure analysis with stable, glycosylation mutant CHO cell lines established by fluorescence-activated cell sorting.

PubMed

Wilke, Sonja; Krausze, Joern; Gossen, Manfred; Groebe, Lothar; Jäger, Volker; Gherardi, Ermanno; van den Heuvel, Joop; Büssow, Konrad

2010-06-01

Stable mammalian cell lines are excellent tools for the expression of secreted and membrane glycoproteins. However, structural analysis of these molecules is generally hampered by the complexity of N-linked carbohydrate side chains. Cell lines with mutations are available that result in shorter and more homogenous carbohydrate chains. Here, we use preparative fluorescence-activated cell sorting (FACS) and site-specific gene excision to establish high-yield glycoprotein expression for structural studies with stable clones derived from the well-established Lec3.2.8.1 glycosylation mutant of the Chinese hamster ovary (CHO) cell line. We exemplify the strategy by describing novel clones expressing single-chain hepatocyte growth factor/scatter factor (HGF/SF, a secreted glycoprotein) and a domain of lysosome-associated membrane protein 3 (LAMP3d). In both cases, stable GFP-expressing cell lines were established by transfection with a genetic construct including a GFP marker and two rounds of cell sorting after 1 and 2 weeks. The GFP marker was subsequently removed by heterologous expression of Flp recombinase. Production of HGF/SF and LAMP3d was stable over several months. 1.2 mg HGF/SF and 0.9 mg LAMP3d were purified per litre of culture, respectively. Homogenous glycoprotein preparations were amenable to enzymatic deglycosylation under native conditions. Purified and deglycosylated LAMP3d protein was readily crystallized. The combination of FACS and gene excision described here constitutes a robust and fast procedure for maximizing the yield of glycoproteins for structural analysis from glycosylation mutant cell lines.

In-Line Sorting of Harumanis Mango Based on External Quality Using Visible Imaging

PubMed Central

Ibrahim, Mohd Firdaus; Ahmad Sa’ad, Fathinul Syahir; Zakaria, Ammar; Md Shakaff, Ali Yeon

2016-01-01

The conventional method of grading Harumanis mango is time-consuming, costly and affected by human bias. In this research, an in-line system was developed to classify Harumanis mango using computer vision. The system was able to identify the irregularity of mango shape and its estimated mass. A group of images of mangoes of different size and shape was used as database set. Some important features such as length, height, centroid and parameter were extracted from each image. Fourier descriptor and size-shape parameters were used to describe the mango shape while the disk method was used to estimate the mass of the mango. Four features have been selected by stepwise discriminant analysis which was effective in sorting regular and misshapen mango. The volume from water displacement method was compared with the volume estimated by image processing using paired t-test and Bland-Altman method. The result between both measurements was not significantly different (P > 0.05). The average correct classification for shape classification was 98% for a training set composed of 180 mangoes. The data was validated with another testing set consist of 140 mangoes which have the success rate of 92%. The same set was used for evaluating the performance of mass estimation. The average success rate of the classification for grading based on its mass was 94%. The results indicate that the in-line sorting system using machine vision has a great potential in automatic fruit sorting according to its shape and mass. PMID:27801799

In-Line Sorting of Harumanis Mango Based on External Quality Using Visible Imaging.

PubMed

Ibrahim, Mohd Firdaus; Ahmad Sa'ad, Fathinul Syahir; Zakaria, Ammar; Md Shakaff, Ali Yeon

2016-10-27

The conventional method of grading Harumanis mango is time-consuming, costly and affected by human bias. In this research, an in-line system was developed to classify Harumanis mango using computer vision. The system was able to identify the irregularity of mango shape and its estimated mass. A group of images of mangoes of different size and shape was used as database set. Some important features such as length, height, centroid and parameter were extracted from each image. Fourier descriptor and size-shape parameters were used to describe the mango shape while the disk method was used to estimate the mass of the mango. Four features have been selected by stepwise discriminant analysis which was effective in sorting regular and misshapen mango. The volume from water displacement method was compared with the volume estimated by image processing using paired t -test and Bland-Altman method. The result between both measurements was not significantly different (P > 0.05). The average correct classification for shape classification was 98% for a training set composed of 180 mangoes. The data was validated with another testing set consist of 140 mangoes which have the success rate of 92%. The same set was used for evaluating the performance of mass estimation. The average success rate of the classification for grading based on its mass was 94%. The results indicate that the in-line sorting system using machine vision has a great potential in automatic fruit sorting according to its shape and mass.

REST: a computer system for estimating logging residue by using the line-intersect method

Treesearch

A. Jeff Martin

1975-01-01

A computer program was designed to accept logging-residue measurements obtained by line-intersect sampling and transform them into summaries useful for the land manager. The features of the program, along with inputs and outputs, are briefly described, with a note on machine compatibility.

Effects of Early U.S. Compulsory Schooling Laws on Educational Assortative Mating: The Importance of Context.

PubMed

Rauscher, Emily

2015-08-01

Modernization theory predicts that rising education should increase assortative mating by education and decrease sorting by race. Recent research suggests that effects of educational expansion depend on contextual factors, such as economic development. Using log-linear and log-multiplicative models of male household heads ages 36 to 75 in the 1940 U.S. census data--the first U.S. census with educational attainment information--I investigate how educational assortative mating changed with one instance of educational expansion: early U.S. compulsory school attendance laws. To improve on existing research and distinguish effects of expansion from changes due to particular years or cohorts, I capitalize on state variation in the timing of these compulsory laws (ranging from 1852 to 1918). Aggregate results suggest that compulsory laws had minimal impact on assortative mating. However, separate analyses by region (and supplemental analyses by race) reveal that assortative mating by education decreased with the laws in the South but increased in the North. Whether due to economic, legal, political, or other differences, results suggest that the implications of educational expansion for marital sorting depend on context. Contemporary implications are discussed in light of President Obama's 2012 suggested extension of compulsory schooling to age 18.

Computer simulations of the energy dissipation rate in a fluorescence-activated cell sorter: Implications to cells.

PubMed

Mollet, Mike; Godoy-Silva, Ruben; Berdugo, Claudia; Chalmers, Jeffrey J

2008-06-01

Fluorescence activated cell sorting, FACS, is a widely used method to sort subpopulations of cells to high purities. To achieve relatively high sorting speeds, FACS instruments operate by forcing suspended cells to flow in a single file line through a laser(s) beam(s). Subsequently, this flow stream breaks up into individual drops which can be charged and deflected into multiple collection streams. Previous work by Ma et al. (2002) and Mollet et al. (2007; Biotechnol Bioeng 98:772-788) indicates that subjecting cells to hydrodynamic forces consisting of both high extensional and shear components in micro-channels results in significant cell damage. Using the fluid dynamics software FLUENT, computer simulations of typical fluid flow through the nozzle of a BD FACSVantage indicate that hydrodynamic forces, quantified using the scalar parameter energy dissipation rate, are similar in the FACS nozzle to levels reported to create significant cell damage in micro-channels. Experimental studies in the FACSVantage, operated under the same conditions as the simulations confirmed significant cell damage in two cell lines, Chinese Hamster Ovary cells (CHO) and THP1, a human acute monocytic leukemia cell line.

Portable acuity screening for any school: validation of patched HOTV with amblyopic patients and Bangerter normals.

PubMed

Tsao Wu, Maya; Armitage, M Diane; Trujillo, Claire; Trujillo, Anna; Arnold, Laura E; Tsao Wu, Lauren; Arnold, Robert W

2017-12-04

We needed to validate and calibrate our portable acuity screening tools so amblyopia could be detected quickly and effectively at school entry. Spiral-bound flip cards and download pdf surround HOTV acuity test box with critical lines were combined with a matching card. Amblyopic patients performed critical line, then threshold acuity which was then compared to patched E-ETDRS acuity. 5 normal subjects wore Bangerter foil goggles to simulate blur for comparative validation. The 31 treated amblyopic eyes showed: logMAR HOTV = 0.97(logMAR E-ETDRS)-0.04 r2 = 0.88. All but two (6%) fell less than 2 lines difference. The five showed logMAR HOTV = 1.09 ((logMAR E-ETDRS) + .15 r2 = 0.63. The critical-line, test box was 98% efficient at screening within one line of 20/40. These tools reliably detected acuity in treated amblyopic patients and Bangerter blurred normal subjects. These free and affordable tools provide sensitive screening for amblyopia in children from public, private and home schools. Changing "pass" criteria to 4 out of 5 would improve sensitivity with somewhat slower testing for all students.

VizieR Online Data Catalog: CoRoT red giants abundances (Morel+, 2014)

NASA Astrophysics Data System (ADS)

Morel, T.; Miglio, A.; Lagarde, N.; Montalban, J.; Rainer, M.; Poretti, E.; Eggenberger, P.; Hekker, S.; Kallinger, T.; Mosser, B.; Valentini, M.; Carrier, F.; Hareter, M.; Mantegazza, L.

2014-02-01

The equivalent widths were measured manually assuming Gaussian profiles or Voigt profiles for the few lines with extended damping wings. Lines with an unsatisfactory fit or significantly affected by telluric features were discarded. Only values eventually retained for the analysis are provided. For the chemical abundances, the usual notation is used: [X/Y]=[log({epsilon}(X))-log({epsilon}(Y))]star - [log({epsilon}(X))-log({epsilon}(Y))]⊙ with log{epsilon}(X)=12+log[N(X)/N(H)] (N is the number density of the species). For lithium, the following notation is used: [Li/H]=log(N(Li))star-log(N(Li))⊙. The adopted solar abundances are taken from Grevesse & Sauval (1998SSRv...85..161G), except for Li for which we adopt our derived values: log({epsilon}(Li))⊙=1.09 and 1.13 in LTE and NLTE, respectively (see text). All the abundances are computed under the assumption of LTE, except Li for which values corrected for departures from LTE using the data of Lind et al. (2009A&A...503..541L) are also provided. All the quoted error bars are 1-sigma uncertainties. (6 data files).

Opto electronic tweezers based smart sweeper for cells/micro-particles sorting

NASA Astrophysics Data System (ADS)

Verma, R. S.; Kumar, N.

2018-04-01

We report on use of opto-electronic tweezers based sorting approach, termed as smart sweepers, for sorting the microscopic particles by using the Dielectrophoretic (DEP) force response of cells on applied a.c. bias frequency. The applied a.c. bias was kept in negative DEP region, close to the crossover frequency of one of the particles. A line shaped intensity pattern, generated by a cylindrical lens, was scanned across the mixture sample. The particles whose cross over frequency was close to the applied bias frequency, experienced negligible negative DEP(n-DEP) force. On the other hand, the other type of particle experienced large repelling force and were forced to move along the scanning direction of the line shaped intensity profile. We, as a proof of concept, demonstrated the working principle of opto electronic smart sweepers by sweeping out the polystyrene particles from a mixture consisting of polystyrene microspheres (PSM) and red blood cells (RBCs) and leaving RBCs in the region of interest.

[Lentivirus-mediated RNA interference of CD133 inhibits the proliferation of CD133(+) liver cancer stem cells and increases their cisplatin chemosensitivity].

PubMed

Lan, Xi; Wang, Yong; Cao, Shu; Zou, Dongling; Li, Fang; Li, Shaolin

2012-12-01

To study the effects of CD133 suppression by lentivirus-mediated RNA interference (RNAi) on the proliferation and chemosensitivity of CD133(+) cancer stem cells (CSCs) sorted from HepG2 cell line. CD133(+) and CD133- cells were sorted from HepG2 cell line by flow cytometry, and the expression of CD133 before and after cell sorting were detected. The stem cell property of sorted CD133(+) cells were validated by sphere-forming assay in vitro and xenograft experiments in vivo. Lentivirus-mediated short hairpin RNA (shRNA) targeting CD133 were transfected into CD133(+) cells, and CD133 mRNA and protein expressions of the transfected cells were detected by RT-PCR and Western blotting, respectively. Before and after the transfection, the proliferative ability of CD133(+) cells was evaluated by colony formation assay, and the cell growth inhibition rate and apoptosis following cisplatin exposure were detected using CCK-8 assay and flow cytometry. The sorted CD133(+) cells showed a high purity of (88.74∓3.19)%, as compared with the purity of (3.36∓1.80)% before cell sorting. CD133(+) cells showed a high tumor sphere formation ability and tumorigenesis capacity compared with CD133- cells. CD133 shRNA transfection significantly inhibited CD133 mRNA and protein expressions in CD133(+) cells (P<0.01), resulting also in a significantly lowered cell proliferative ability (P<0.01) and an increased growth inhibition rate (P<0.01) and obviously increased cell apoptosis (P<0.05) after cisplatin exposure. Lentivirus-mediated RNAi for CD133 suppression inhibits the proliferation of CD133(+) liver cancer stem cells and increases their chemosensitivity to cisplatin.

NMR logging apparatus

DOEpatents

Walsh, David O; Turner, Peter

2014-05-27

Technologies including NMR logging apparatus and methods are disclosed. Example NMR logging apparatus may include surface instrumentation and one or more downhole probes configured to fit within an earth borehole. The surface instrumentation may comprise a power amplifier, which may be coupled to the downhole probes via one or more transmission lines, and a controller configured to cause the power amplifier to generate a NMR activating pulse or sequence of pulses. Impedance matching means may be configured to match an output impedance of the power amplifier through a transmission line to a load impedance of a downhole probe. Methods may include deploying the various elements of disclosed NMR logging apparatus and using the apparatus to perform NMR measurements.

IMPROVED Cr II log(gf ) VALUES AND ABUNDANCE DETERMINATIONS IN THE PHOTOSPHERES OF THE SUN AND METAL-POOR STAR HD 84937

PubMed Central

Lawler, J. E.; Sneden, C.; Nave, G.; Den Hartog, E. A.; Emrahođlu, N.; Cowan, J. J.

2017-01-01

New emission branching fraction (BF) measurements for 183 lines of the second spectrum of chromium (Cr II) and new radiative lifetime measurements from laser-induced fluorescence for 8 levels of Cr+ are reported. The goals of this study are to improve transition probability measurements in Cr II and reconcile solar and stellar Cr abundance values based on Cr I and Cr II lines. Eighteen spectra from three Fourier Transform Spectrometers supplemented with ultraviolet spectra from a high-resolution echelle spectrometer are used in the BF measurements. Radiative lifetimes from this study and earlier publications are used to convert the BFs into absolute transition probabilities. These new laboratory data are applied to determine the Cr abundance log ε in the Sun and metal-poor star HD 84937. The mean result in the Sun is 〈logε (Cr II)〉 = 5.624±0.009 compared to 〈logε(Cr I)〉 = 5.644 ± 0.006 on a scale with the hydrogen abundance log ε(H) = 12 and with the uncertainty representing only line-to-line scatter. A Saha (ionization balance) test on the photosphere of HD 84937 is also performed, yielding 〈logε(Cr II)〉 = 3.417 ± 0.006 and 〈log ε(Cr I, lower level excitation potential E. P. >30 eV)〉 = 3.3743±30.011 for this dwarf star. We find a correlation of Cr with the iron-peak element Ti, suggesting an associated nucleosynthetic production. Four iron-peak elements (Cr along with Ti, V, and Sc) appear to have a similar (or correlated) production history—other iron-peak elements appear not to be associated with Cr. PMID:28579650

IMPROVED Cr II log(gf ) VALUES AND ABUNDANCE DETERMINATIONS IN THE PHOTOSPHERES OF THE SUN AND METAL-POOR STAR HD 84937.

PubMed

Lawler, J E; Sneden, C; Nave, G; Den Hartog, E A; Emrahođlu, N; Cowan, J J

2017-01-01

New emission branching fraction (BF) measurements for 183 lines of the second spectrum of chromium (Cr II) and new radiative lifetime measurements from laser-induced fluorescence for 8 levels of Cr + are reported. The goals of this study are to improve transition probability measurements in Cr II and reconcile solar and stellar Cr abundance values based on Cr I and Cr II lines. Eighteen spectra from three Fourier Transform Spectrometers supplemented with ultraviolet spectra from a high-resolution echelle spectrometer are used in the BF measurements. Radiative lifetimes from this study and earlier publications are used to convert the BFs into absolute transition probabilities. These new laboratory data are applied to determine the Cr abundance log ε in the Sun and metal-poor star HD 84937. The mean result in the Sun is 〈log ε (Cr II)〉 = 5.624±0.009 compared to 〈log ε (Cr I)〉 = 5.644 ± 0.006 on a scale with the hydrogen abundance log ε (H) = 12 and with the uncertainty representing only line-to-line scatter. A Saha (ionization balance) test on the photosphere of HD 84937 is also performed, yielding 〈log ε (Cr II)〉 = 3.417 ± 0.006 and 〈log ε (Cr I, lower level excitation potential E. P. >30 eV)〉 = 3.3743±30.011 for this dwarf star. We find a correlation of Cr with the iron-peak element Ti, suggesting an associated nucleosynthetic production. Four iron-peak elements (Cr along with Ti, V, and Sc) appear to have a similar (or correlated) production history-other iron-peak elements appear not to be associated with Cr.

Quaternary structure and apical membrane sorting of the mammalian NaSi-1 sulfate transporter in renal cell lines.

PubMed

Regeer, Ralf R; Nicke, Annette; Markovich, Daniel

2007-01-01

NaSi-1 encodes a Na(+)-sulfate cotransporter expressed on the apical membrane of renal proximal tubular cells, which is responsible for body sulfate homeostasis. Limited information is available on NaSi-1 protein structure and the mechanisms controlling its apical membrane sorting. The aims of this study were to biochemically determine the quaternary structure of the rat NaSi-1 protein and to characterize its expression in renal epithelial cell lines. Hexahistidyl-tagged NaSi-1 (NaSi-1-His) proteins expressed in Xenopus oocytes, appeared as two bands of about 60 and 75 kDa. PNGase F treatment shifted both bands to 57 kDa while endoglycosidase H treatment led to a downward shift of the lower molecular mass band only. Mutagenesis of a putative N-glycosylation site (N591S) produced a single band that was not shifted by endoglycosidase H or PNGase F, confirming a single glycosylation site at residue 591. Blue native-PAGE and cross-linking experiments revealed dimeric complexes, suggesting the native form of NaSi-1 to be a dimer. Transient transfection of EGFP/NaSi-1 in renal epithelial cells (OK, LLC-PK1 and MDCK) demonstrated apical membrane sorting, which was insensitive to tunicamycin. Transfection of the EGFP/NaSi-1 N591S glycosylation mutant also showed apical expression, suggesting N591 is not essential for apical sorting. Treatment with cholesterol depleting compounds did not disrupt apical sorting, but brefeldin A led to misrouting to the basolateral membrane, suggesting that NaSi-1 sorting is through the ER to Golgi pathway. Our data demonstrates that NaSi-1 forms a dimeric protein which is glycosylated at N591, whose sorting to the apical membrane in renal epithelial cells is brefeldin A-sensitive and independent of lipid rafts or glycosylation.

WILSON-BAPPU EFFECT: EXTENDED TO SURFACE GRAVITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Sunkyung; Kang, Wonseok; Lee, Jeong-Eun

2013-10-01

In 1957, Wilson and Bappu found a tight correlation between the stellar absolute visual magnitude (M{sub V} ) and the width of the Ca II K emission line for late-type stars. Here, we revisit the Wilson-Bappu relationship (WBR) to claim that the WBR can be an excellent indicator of stellar surface gravity of late-type stars as well as a distance indicator. We have measured the width (W) of the Ca II K emission line in high-resolution spectra of 125 late-type stars obtained with the Bohyunsan Optical Echelle Spectrograph and adopted from the Ultraviolet and Visual Echelle Spectrograph archive. Based onmore » our measurement of the emission line width (W), we have obtained a WBR of M{sub V} = 33.76 - 18.08 log W. In order to extend the WBR to being a surface gravity indicator, stellar atmospheric parameters such as effective temperature (T{sub eff}), surface gravity (log g), metallicity ([Fe/H]), and micro-turbulence ({xi}{sub tur}) have been derived from self-consistent detailed analysis using the Kurucz stellar atmospheric model and the abundance analysis code, MOOG. Using these stellar parameters and log W, we found that log g = -5.85 log W+9.97 log T{sub eff} - 23.48 for late-type stars.« less

Statistical physics in foreign exchange currency and stock markets

NASA Astrophysics Data System (ADS)

Ausloos, M.

2000-09-01

Problems in economy and finance have attracted the interest of statistical physicists all over the world. Fundamental problems pertain to the existence or not of long-, medium- or/and short-range power-law correlations in various economic systems, to the presence of financial cycles and on economic considerations, including economic policy. A method like the detrended fluctuation analysis is recalled emphasizing its value in sorting out correlation ranges, thereby leading to predictability at short horizon. The ( m, k)-Zipf method is presented for sorting out short-range correlations in the sign and amplitude of the fluctuations. A well-known financial analysis technique, the so-called moving average, is shown to raise questions to physicists about fractional Brownian motion properties. Among spectacular results, the possibility of crash predictions has been demonstrated through the log-periodicity of financial index oscillations.

Modeling the size-density relationship in direct-seeded slash pine stands

Treesearch

Quang V. Cao; Thomas J. Dean; V. Clark Baldwin

2000-01-01

The relationship between quadratic mean diameter and tree density appeared curvilinear on a log–log scale, based on data from direct-seeded slash pine (Pinus elliotti var. elliotti Engelm.) stands. The self-thinning trajectory followed a straight line for high tree density levels and then turned away from this line as tree density...

Toward Spectroscopically Detecting the Global Latitudinal Temperature Variation on the Solar Surface

NASA Astrophysics Data System (ADS)

Takeda, Y.; UeNo, S.

2017-09-01

A very slight rotation-induced latitudinal temperature variation (presumably on the order of several kelvin) on the solar surface is theoretically expected. While recent high-precision solar brightness observations reported its detection, confirmation by an alternative approach using the strengths of spectral lines is desirable, for which reducing the noise due to random fluctuation caused by atmospheric inhomogeneity is critical. Toward this difficult task, we carried out a pilot study of spectroscopically investigating the relative variation of temperature (T) at a number of points in the solar circumference region near to the limb (where latitude dependence should be detectable, if any exists) based on the equivalent widths (W) of 28 selected lines in the 5367 - 5393 Å and 6075 - 6100 Å regions. We paid special attention to i) clarifying which types of lines should be employed and ii) how much precision is attainable in practice. We found that lines with strong T-sensitivity (|log W/log T|) should be used and that very weak lines should be avoided because they inevitably suffer strong relative fluctuations (Δ W/W). Our analysis revealed that a precision of Δ T/T ≈ 0.003 (corresponding to ≈ 15 K) can be achieved at best by a spectral line with comparatively large |log W/log T|, although this can possibly be further improved When a number of lines are used all together. Accordingly, if many such favorable lines could be measured with subpercent precision of Δ W/W and by averaging the resulting Δ T/T from each line, the random noise would eventually be reduced to ≲ 1 K and detection of a very subtle amount of global T-gradient might be possible.

Fast algorithms for transforming back and forth between a signed permutation and its equivalent simple permutation.

PubMed

Gog, Simon; Bader, Martin

2008-10-01

The problem of sorting signed permutations by reversals is a well-studied problem in computational biology. The first polynomial time algorithm was presented by Hannenhalli and Pevzner in 1995. The algorithm was improved several times, and nowadays the most efficient algorithm has a subquadratic running time. Simple permutations played an important role in the development of these algorithms. Although the latest result of Tannier et al. does not require simple permutations, the preliminary version of their algorithm as well as the first polynomial time algorithm of Hannenhalli and Pevzner use the structure of simple permutations. More precisely, the latter algorithms require a precomputation that transforms a permutation into an equivalent simple permutation. To the best of our knowledge, all published algorithms for this transformation have at least a quadratic running time. For further investigations on genome rearrangement problems, the existence of a fast algorithm for the transformation could be crucial. Another important task is the back transformation, i.e. if we have a sorting on the simple permutation, transform it into a sorting on the original permutation. Again, the naive approach results in an algorithm with quadratic running time. In this paper, we present a linear time algorithm for transforming a permutation into an equivalent simple permutation, and an O(n log n) algorithm for the back transformation of the sorting sequence.

A log-linear model approach to estimation of population size using the line-transect sampling method

USGS Publications Warehouse

Anderson, D.R.; Burnham, K.P.; Crain, B.R.

1978-01-01

The technique of estimating wildlife population size and density using the belt or line-transect sampling method has been used in many past projects, such as the estimation of density of waterfowl nestling sites in marshes, and is being used currently in such areas as the assessment of Pacific porpoise stocks in regions of tuna fishing activity. A mathematical framework for line-transect methodology has only emerged in the last 5 yr. In the present article, we extend this mathematical framework to a line-transect estimator based upon a log-linear model approach.

Hyperspectral reflectance and fluorescence line-scan imaging system for online detection of fecal contamination on apples

NASA Astrophysics Data System (ADS)

Kim, Moon S.; Cho, Byoung-Kwan; Yang, Chun-Chieh; Chao, Kaunglin; Lefcourt, Alan M.; Chen, Yud-Ren

2006-10-01

We have developed nondestructive opto-electronic imaging techniques for rapid assessment of safety and wholesomeness of foods. A recently developed fast hyperspectral line-scan imaging system integrated with a commercial apple-sorting machine was evaluated for rapid detection of animal feces matter on apples. Apples obtained from a local orchard were artificially contaminated with cow feces. For the online trial, hyperspectral images with 60 spectral channels, reflectance in the visible to near infrared regions and fluorescence emissions with UV-A excitation, were acquired from apples moving at a processing sorting-line speed of three apples per second. Reflectance and fluorescence imaging required a passive light source, and each method used independent continuous wave (CW) light sources. In this paper, integration of the hyperspectral imaging system with the commercial applesorting machine and preliminary results for detection of fecal contamination on apples, mainly based on the fluorescence method, are presented.

Improved log(gf) Values for Lines of Ni I and New Nickel Abundances in the Sun and the Metal-Poor Star HD 84937

NASA Astrophysics Data System (ADS)

Lawler, James E.; Wood, M. P.; Sneden, C.; Cowan, J. J.

2014-01-01

New atomic transition probability measurements for 371 lines of Ni I in the UV through near IR are reported. These results are used to determine the Ni abundance of the Sun and a very metal-poor main-sequence turnoff dwarf star over a range of wavelength and E. P. values to search for non-LTE effects. For reasons only partially understood, strong lines of Ni I are unusually prone to optical depth errors in emission studies on laboratory sources. Branching fractions from data recorded using a Fourier transform spectrometer (FTS) and a 3 m echelle spectrometer are combined with published radiative lifetimes from laser induced fluorescence measurements to determine these new transition probabilities. The large echelle spectrometer provides essential UV sensitivity, spectral resolution, and especially freedom from multiplex noise that is needed to eliminate optical depth errors. There is quite good agreement with earlier, but less extensive, sets of measurements by Blackwell et al. (MNRAS 1989, 236, 235) and Wickliffe & Lawler (ApJS 1997 110, 1163). The new Ni I data are applied to high resolution visible and UV spectra of the Sun and HD 84937 to derive new, more accurate nickel abundances. In the Sun we find log(eps(Ni I)) = 6.28 (sigma = 0.06, 75 lines) and in HD 84937 we find we find log(eps(Ni I)) = 3.89 (sigma = 0.09, 77 lines), yielding [Ni/Fe] = -0.08 from log(eps(Fe)) = 7.52 in the Sun and log(eps(Fe)) = 5.19 in HD 84937. The Saha balance of Ni in HD 84937 is confirmed using 8 lines of Ni II, although these UV ion lines are somewhat saturated. This work is supported by NASA grant NNX10AN93G (JEL) and NSF grants AST-0908978 and AST-1211585 (CS).

Non-LTE effects in Al I lines

NASA Astrophysics Data System (ADS)

Menzhevitski, V. S.; Shimansky, V. V.; Shimanskaya, N. N.

2012-07-01

We present the theoretical analysis of the Al I line formation in the spectra of late-type stars ignoring the assumption of local thermodynamic equilibrium (LTE). The calculations were based on the 39-level aluminum atom model for one-dimensional hydrostatic stellar atmosphere models with the parameters: T eff from 4000 to 9000 K, log g = 0.0-4.5, and metallicity [ A] = 0.0;-1.0;-2.0;-3.0;-4.0. The aluminum atom model and the method of calculations were tested by the study of line profiles in the solar spectrum. We refined the oscillator strengths and Van-der-Vaals broadening constants C 6 of the investigated transitions. We conclude that the Al I atom is in the overionization state: the 3 p level is underpopulated in the line formation region. This leads to the line weakening, as compared with the LTE results. The overionization effect becomes more pronounced with increasing temperature and decreasing metallicity. We show that the use of various atomic data (ionization cross-sections) for the low levels of Al I does not change the behavior of non-LTE deviations, whereas the value of these deviations varies essentially. For nine selected Al I lines we calculated the grids of theoretical non-LTE corrections (Δ X NLTE = log ɛ NLTE - log ɛ LTE) to the Al abundances determinedwith the LTE assumption. The non-LTE corrections are positive and significant for the stars with temperatures T eff > 6000 K. These corrections weakly depend on log g, and increase with declining stellar metallicity.

Characterization of cancer stem-like cells derived from a side population of a human gallbladder carcinoma cell line, SGC-996

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Xin-xing; Wang, Jian, E-mail: dr_wangjian@yahoo.com.cn; Wang, Hao-lu

2012-03-23

Highlights: Black-Right-Pointing-Pointer We sorted SP cells from a human gallbladder carcinoma cell lines, SGC-996. Black-Right-Pointing-Pointer SP cells displayed higher proliferation and stronger clonal-generating capability. Black-Right-Pointing-Pointer SP cells showed more migratory and invasive abilities. Black-Right-Pointing-Pointer SP cells were more resistant and tumorigenic than non-SP counterparts. Black-Right-Pointing-Pointer ABCG2 might be a candidate as a marker for SP cells. -- Abstract: The cancer stem cell (CSC) hypothesis proposes that CSCs, which can renew themselves proliferate infinitely, and escape chemotherapy, become the root of recurrence and metastasis. Previous studies have verified that side population (SP) cells, characterized by their ability to efflux lipophilic substratemore » Hoechst 33342, to share many characteristics of CSCs in multiplying solid tumors. The purpose of this study was to sort SP cells from a human gallbladder carcinoma cell line, SGC-996 and to preliminarily identify the biological characteristics of SP cells from the cell line. Using flow cytometry we effectively sorted SP cells from the cell line SGC-996. SP cells not only displayed higher proliferative, stronger clonal-generating, more migratory and more invasive capacities, but showed stronger resistance. Furthermore, our experiments demonstrated that SP cells were more tumorigenic than non-SP counterparts in vivo. Real-time PCR analysis and immunocytochemistry showed that the expression of ATP-binding cassette subfamily G member 2 (ABCG2) was significantly higher in SP cells. Hence, these results collectively suggest that SP cells are progenitor/stem-like cells and ABCG2 might be a candidate marker for SP cells in human gallbladder cancer.« less

Biased estimation of forest log characteristics using intersect diameters

Treesearch

Lisa J. Bate; Torolf R. Torgersen; Michael J. Wisdom; Edward O. Garton

2009-01-01

Logs are an important structural feature of forest ecosystems, and their abundance affects many resources and forest processes, including fire regimes, soil productivity, silviculture, carbon cycling, and wildlife habitat. Consequently, logs are often sampled to estimate their frequency, percent cover, volume, and weight. The line-intersect method (LIM) is one of the...

VLSI Design, Parallel Computation and Distributed Computing

DTIC Science & Technology

1991-09-30

I U1 TA 3 Daniel Mleitman U. : C ..( -_. .. .s .. . . . . Tom Leighton David Shmoys . ........A ,~i ;.t , 77 Michael Sipser , Di.,t a-., Eva Tardos...Leighton and Plaxton on the construction of a sim- ple c log .- depth circuit (where c < 7.5) that sorts a random permutation with very high probability...puting iPOD( ). Aug-ust 1992. Vancouver. British Columbia (to appear). 20. B 1Xti~ c .. U(.ii. 1. Gopal. M. [Kaplan and S. Kutten, "Distributed Control for

Effects of sediment-associated extractable metals, degree of sediment grain sorting, and dissolved organic carbon upon Cryptosporidium parvum removal and transport within riverbank filtration sediments, Sonoma County, California.

PubMed

Metge, David W; Harvey, Ronald W; Aiken, George R; Anders, Robert; Lincoln, George; Jasperse, Jay; Hill, Mary C

2011-07-01

Oocysts of the protozoan pathogen Cryptosporidium parvum are of particular concern for riverbank filtration (RBF) operations because of their persistence, ubiquity, and resistance to chlorine disinfection. At the Russian River RBF site (Sonoma County, CA), transport of C. parvum oocysts and oocyst-sized (3 μm) carboxylate-modified microspheres through poorly sorted (sorting indices, σ(1), up to 3.0) and geochemically heterogeneous sediments collected between 2 and 25 m below land surface (bls) were assessed. Removal was highly sensitive to variations in both the quantity of extractable metals (mainly Fe and Al) and degree of grain sorting. In flow-through columns, there was a log-linear relationship (r(2) = 0.82 at p < 0.002) between collision efficiency (α, the probability that colloidal collisions with grain surfaces would result in attachment) and extractable metals, and a linear relationship (r(2) = 0.99 at p < 0.002) between α and σ(1). Collectively, variability in extractable metals and grain sorting accounted for ∼83% of the variability in α (at p < 0.0002) along the depth profiles. Amendments of 2.2 mg L(-1) of Russian River dissolved organic carbon (DOC) reduced α for oocysts by 4-5 fold. The highly reactive hydrophobic organic acid (HPOA) fraction was particularly effective in re-entraining sediment-attached microspheres. However, the transport-enhancing effects of the riverine DOC did not appear to penetrate very deeply into the underlying sediments, judging from high α values (∼1.0) observed for oocysts being advected through unamended sediments collected at ∼2 m bls. This study suggests that in evaluating the efficacy of RBF operations to remove oocysts, it may be necessary to consider not only the geochemical nature and size distribution of the sediment grains, but also the degrees of sediment sorting and the concentration, reactivity, and penetration of the source water DOC.

The origins of post-starburst galaxies at z < 0.05

NASA Astrophysics Data System (ADS)

Pawlik, M. M.; Taj Aldeen, L.; Wild, V.; Mendez-Abreu, J.; Lahén, N.; Johansson, P. H.; Jimenez, N.; Lucas, W.; Zheng, Y.; Walcher, C. J.; Rowlands, K.

2018-06-01

Post-starburst galaxies can be identified via the presence of prominent Hydrogen Balmer absorption lines in their spectra. We present a comprehensive study of the origin of strong Balmer lines in a volume-limited sample of 189 galaxies with 0.01 < z < 0.05, log ({M}_{\\star }/{M}_{⊙})>9.5 and projected axial ratio b/a > 0.32. We explore their structural properties, environments, emission lines, and star formation histories, and compare them to control samples of star-forming and quiescent galaxies, and simulated galaxy mergers. Excluding contaminants, in which the strong Balmer lines are most likely caused by dust-star geometry, we find evidence for three different pathways through the post-starburst phase, with most events occurring in intermediate-density environments: (1) a significant disruptive event, such as a gas-rich major merger, causing a starburst and growth of a spheroidal component, followed by quenching of the star formation (70 per cent of post-starburst galaxies at 9.5< log ({M}_{\\star}/{M}_{⊙})<10.5 and 60 per cent at log ({M}_{\\star}/{M}_{⊙})>10.5); (2) at 9.5< log ({M}_{\\star}/{M}_{⊙})<10.5, stochastic star formation in blue-sequence galaxies, causing a weak burst and subsequent return to the blue sequence (30 per cent); (3) at log ({M}_{\\star}/{M}_{⊙})>10.5, cyclic evolution of quiescent galaxies which gradually move towards the high-mass end of the red sequence through weak starbursts, possibly as a result of a merger with a smaller gas-rich companion (40 per cent). Our analysis suggests that active galactic nuclei (AGNs) are 'on' for 50 per cent of the duration of the post-starburst phase, meaning that traditional samples of post-starburst galaxies with strict emission-line cuts will be at least 50 per cent incomplete due to the exclusion of narrow-line AGNs.

Feeding and Feedback in the Powerful Radio Galaxy 3C 120

NASA Technical Reports Server (NTRS)

Tombesi, F.; Mushotzky, R. F.; Reynolds, C. S.; Kallman, T.; Reeves, J. N.; Braito, V.; Ueda, Y.; Leutenegger, M. A.; Williams, B. J.; Stawarz, L.;

Construction of Various γ34.5 Deleted Fluorescent-Expressing Oncolytic herpes Simplex type 1 (oHSV) for Generation and Isolation of HSV-Based Vectors

PubMed

Abdoli, Shahriyar; Roohvand, Farzin; Teimoori-Toolabi, Ladan; Shokrgozar, Mohammad Ali; Bahrololoumi, Mina; Azadmanesh, Kayhan

2017-07-01

Oncolytic herpes simplex virus (oHSV)-based vectors lacking γ34.5 gene, are considered as ideal templates to construct efficient vectors for (targeted) cancer gene therapy. Herein, we reported the construction of three single/dually-flourescence labeled and γ34.5-deleted, recombinant HSV-1 vectors for rapid generation and easy selection/isolation of different HSV-Based vectors. Generation of recombinant viruses was performed with conventional homologous recombination methods using green fluorescent protein (GFP) and BleCherry harboring shuttle vectors. Viruses were isolated by direct fluorescence observation and standard plaque purifying methods and confirmed by PCR and sequencing and flow cytometry. XTT and plaque assay titration were performed on Vero, U87MG, and T98 GBM cell lines. We generated three recombinant viruses, HSV-GFP, HSV-GR (Green-Red), and HSV-Red. The HSV-GFP showed two log higher titer (1010 PFU) than wild type (108 PFU). In contrast, HSV-GR and HSV-Red showed one log lower titer (107 PFU) than parental HSV. Cytotoxicity analysis showed that HSV-GR and HSV-Red can lyse target tumor cells at multiplicity of infection of 10 and 1 (P<0.001). Moreover, HSV-GFP showed higher infection potency (98%) in comparison with HSV-GR (82%). Our oHSVs provide a simple and an efficient platform for construction and rapid isolation of 2nd and 3rd generation oHSVs by replacing the inserted dyes with transgenes and also for rapid identification via fluorescence activated cell sorting. These vectors can also be used for tracing the efficacy of therapeutic agents on target cells, imaging of neural or tumoral cells in vitro/in vivo and as oncolytic agents in cancer therapy.

Challenges in automatic sorting of construction and demolition waste by hyperspectral imaging

NASA Astrophysics Data System (ADS)

Hollstein, Frank; Cacho, Íñigo; Arnaiz, Sixto; Wohllebe, Markus

2016-05-01

EU-28 countries currently generate 460 Mt/year of construction and demolition waste (C&DW) and the generation rate is expected to reach around 570 Mt/year between 2025 and 2030. There is great potential for recycling C&DW materials since they are massively produced and content valuable resources. But new C&DW is more complex than existing one and there is a need for shifting from traditional recycling approaches to novel recycling solutions. One basic step to achieve this objective is an improvement in (automatic) sorting technology. Hyperspectral Imaging is a promising candidate to support the process. However, the industrial distribution of Hyperspectral Imaging in the C&DW recycling branch is currently insufficiently pronounced due to high investment costs, still insufficient robustness of optical sensor hardware in harsh ambient conditions and, because of the need of sensor fusion, not well-engineered special software methods to perform the (on line) sorting tasks. Thereby frame rates of over 300 Hz are needed for a successful sorting result. Currently the biggest challenges with regard to C&DW detection cover the need of overlapping VIS, NIR and SWIR hyperspectral images in time and space, in particular for selective recognition of contaminated particles. In the study on hand a new approach for hyperspectral imagers is presented by exploiting SWIR hyperspectral information in real time (with 300 Hz). The contribution describes both laboratory results with regard to optical detection of the most important C&DW material composites as well as a development path for an industrial implementation in automatic sorting and separation lines. The main focus is placed on the closure of the two recycling circuits "grey to grey" and "red to red" because of their outstanding potential for sustainability in conservation of construction resources.

[Visual acuity and magnification requirement after ranibizumab in patients with wet age-related macular degeneration].

PubMed

Kloos, P; Bernasconi, P; Estermann, S; Bachmann, B; Rutishauser, Y; Thölen, A

2008-05-01

The purpose of this study was to examine the visual outcome by measuring visual acuity (VA) and magnification requirement (MR) in patients with wet AMD after repeated intravitreal injections of ranibizumab. A total of 195 eyes were treated with repeated intravitreal injections of ranibizumab "as needed". VA (Snellen chart) and MR (SZB reading chart) at baseline of 114 eyes with occult or minimally classic lesions, 42 eyes with predominantly classic lesions and 39 with retinal angiomatous proliferations (RAP) were compared at 3 and 6 months after beginning of treatment. The whole group of 195 patients with wet AMD (688 intravitreal injections within 6 months) demonstrated a mean improvement of VA of 0.72 lines after 3 months (p < 0.001) and 1.54 lines after 6 months (p < 0.001) and a mean improvement of MR of 0.59 log units after 3 months (p < 0.001) and 0.73 log units after 6 months (p < 0.001). Mean change in VA after 3 and 6 months demonstrated a significant improvement (p < 0.001 to p < 0.05) for eyes with occult CNV (+ 0.8 /+ 1.6 lines) and RAP (+ 1.2 /+ 1.9 lines) whereas mean improvement in VA for classic CNV (+ 0.02 /+ 0.87 lines) did not reach significance compared to baseline. Comparable results were obtained for the mean change of MR after 3 and 6 months for eyes with occult CNV (+ 0.75 log units/+ 0.92 log units). For eyes with RAP mean improvement of MR was + 0.74 log units after 3 months (p < 0.05) and it was not significant with + 0.8 log units after 6 months (p > 0.05). MR did not show a significant change during follow-up for classic CNV. Apart from eyes with classic CNV, in more than 90 % of the eyes both VA and MR remained stable or improved (loss < 3 lines in VA or deterioration of MR of < 3 log units). Although 45 % of the eyes with predominantly classic CNV had received photodynamic therapies with Verteporfin prior to the intravitreal injections with ranibizumab, MR remained stable in 80 % over 6 months. With repeated injections of ranibizumab "as needed", VA could be improved as well as MR could be lowered in a majority of patients with wet AMD and therefore reading ability could be optimized. Over 6 months the treatment frequency was lower compared to the monthly administration.

Design and application of the falling vertical sorting machine

NASA Astrophysics Data System (ADS)

Zuo, Ping; Peng, Tao; Yang, Hai

2018-04-01

In the process of tobacco production, it is necessary to pack the smoke according to the needs of different customers. A sorting machine is used to pick up the cigarette at present, there is a launch channel machine, a percussible vertical machine, But in the sorting process, the rolling channel machine is different in terms of the quality of smoke and the frictional force. It is difficult to ensure the location and posture of the belt sorting line, which causes the manipulator to not grasp. The strike type vertical machine is difficult to control the parallelism of the smoke. Now this team has developed a falling sorting machine, which has solved the smoke drop of a cigarette to the transmission belt. There will not be no code, can satisfy most of the different types of smoke sorting and no damage to smoke status. The dynamic characteristics such as the angular error of the opening and closing mechanism are carried out by ADAMS software. The simulation results show that the maximum angular error is 0.016rad. Through the test of the device, the goods falling speed is 7031/hour, the good of the falling position error within 2mm, meet the crawl accuracy requirements of the palletizing robot.

Adaptable Computing Environment/Self-Assembling Software

DOE Office of Scientific and Technical Information (OSTI.GOV)

Osbourn, Gordon C.; Bouchard, Ann M.; Bartholomew, John W.

Complex software applications are difficult to learn to use and to remember how to use. Further, the user has no control over the functionality available in a given application. The software we use can be created and modified only by a relatively small group of elite, highly skilled artisans known as programmers. "Normal users" are powerless to create and modify software themselves, because the tools for software development, designed by and for programmers, are a barrier to entry. This software, when completed, will be a user-adaptable computing environment in which the user is really in control of his/her own software,more » able to adapt the system, make new parts of the system interactive, and even modify the behavior of the system itself. Som key features of the basic environment that have been implemented are (a) books in bookcases, where all data is stored, (b) context-sensitive compass menus (compass, because the buttons are located in compass directions relative to the mouose cursor position), (c) importing tabular data and displaying it in a book, (d) light-weight table querying/sorting, (e) a Reach&Get capability (sort of a "smart" copy/paste that prevents the user from copying invalid data), and (f) a LogBook that automatically logs all user actions that change data or the system itself. To bootstrap toward full end-user adaptability, we implemented a set of development tools. With the development tools, compass menus can be made and customized.« less

Lithology and base of the surficial aquifer system, Palm Beach County, Florida

USGS Publications Warehouse

Miller, Wesley L.

1987-01-01

The surficial aquifer system is a major source of freshwater in Palm Beach County. In 1982, public supply withdrawals from the aquifer system totaled 33,543 million gallons, 77.5% of total public supply withdrawals. To evaluate the aquifer system and its geologic framework, a cooperative study with Palm Beach County was begun in 1982 by the U.S. Geological Survey. The surficial aquifer system in Palm Beach County is composed primarily of sand, sandstone, shell, silt, calcareous clay (marl), and limestone deposited during the Pleistocene and Pliocene epochs. In the western two-thirds of Palm Beach County, sediments in the aquifer system are poorly consolidated sand, shell, and sandy limestone. Owing to interspersed calcareous clays and silt and very poorly sorted materials, permeabilities in this zone of the aquifer system are relatively low. Two other zones of the aquifer system are found in the eastern one-third of the county where the sediments are appreciably more permeable than in the west due to better sorting and less silt and clay content. The location of more detailed lithologic logs for wells in these sections, along with data from nearby wells, allowed enhanced interpretation and depiction of the lithology which had previously been generalized. The most permeable zone of the aquifer system in this area is characterized by highly developed secondary porosity where infiltrating rainwater and solution by groundwater have removed calcitic-cementing materials from the sediments to produce interconnected cavities. Increased permeability in the aquifer system is generally coincident with the eastern boundary of the overlying organic soils and Lake Flirt Marl. Lithologic logs of wells in Palm Beach County indicate that sediments forming the aquifer system were deposited directly on the erosional surface of the Hawthorn Formation in some areas. In other locations in the county, lithologic logs indicate that the base of the aquifer system was formed by fluvial deposits containing erosional materials from the Tamiami and Hawthorn Formations and Caloosahatchee Marl. (Lantz-PTT)

Global LINE-1 DNA methylation is associated with blood glycaemic and lipid profiles

PubMed Central

Pearce, Mark S; McConnell, James C; Potter, Catherine; Barrett, Laura M; Parker, Louise; Mathers, John C; Relton, Caroline L

2012-01-01

Background Patterns of DNA methylation change with age and these changes are believed to be associated with the development of common complex diseases. The hypothesis that Long Interspersed Nucleotide Element 1 (LINE-1) DNA methylation (an index of global DNA methylation) is associated with biomarkers of metabolic health was investigated in this study. Methods Global LINE-1 DNA methylation was quantified by pyrosequencing in blood-derived DNA samples from 228 individuals, aged 49–51 years, from the Newcastle Thousand Families Study (NTFS). Associations between log-transformed LINE-1 DNA methylation levels and anthropometric and blood biochemical measurements, including triglycerides, total cholesterol, low-density lipoprotein (LDL) and high-density lipoprotein (HDL) cholesterol, fasting glucose and insulin secretion and resistance were examined. Results Linear regression, after adjustment for sex, demonstrated positive associations between log-transformed LINE-1 DNA methylation and fasting glucose {coefficient 2.80 [95% confidence interval (CI) 0.39–5.22]}, total cholesterol [4.76 (95% CI 1.43–8.10)], triglycerides [3.83 (95% CI 1.30–6.37)] and LDL-cholesterol [5.38 (95% CI 2.12–8.64)] concentrations. A negative association was observed between log-transformed LINE-1 methylation and both HDL cholesterol concentration [−1.43 (95% CI −2.38 to −0.48)] and HDL:LDL ratio [−1.06 (95% CI −1.76 to −0.36)]. These coefficients reflect the millimoles per litre change in biochemical measurements per unit increase in log-transformed LINE-1 methylation. Conclusions These novel associations between global LINE-1 DNA methylation and blood glycaemic and lipid profiles highlight a potential role for epigenetic biomarkers as predictors of metabolic disease and may be relevant to future diagnosis, prevention and treatment of this group of disorders. Further work is required to establish the role of confounding and reverse causation in the observed associations. PMID:22422454

Using parallel computing methods to improve log surface defect detection methods

Treesearch

R. Edward Thomas; Liya Thomas

2013-01-01

Determining the size and location of surface defects is crucial to evaluating the potential yield and value of hardwood logs. Recently a surface defect detection algorithm was developed using the Java language. This algorithm was developed around an earlier laser scanning system that had poor resolution along the length of the log (15 scan lines per foot). A newer...

Identification of a distinct population of CD133+CXCR4+ cancer stem cells in ovarian cancer

PubMed Central

Cioffi, Michele; D’Alterio, Crescenzo; Camerlingo, Rosalba; Tirino, Virginia; Consales, Claudia; Riccio, Anna; Ieranò, Caterina; Cecere, Sabrina Chiara; Losito, Nunzia Simona; Greggi, Stefano; Pignata, Sandro; Pirozzi, Giuseppe; Scala, Stefania

2015-01-01

CD133 and CXCR4 were evaluated in the NCI-60 cell lines to identify cancer stem cell rich populations. Screening revealed that, ovarian OVCAR-3, -4 and -5 and colon cancer HT-29, HCT-116 and SW620 over expressed both proteins. We aimed to isolate cells with stem cell features sorting the cells expressing CXCR4+CD133+ within ovarian cancer cell lines. The sorted population CD133+CXCR4+ demonstrated the highest efficiency in sphere formation in OVCAR-3, OVCAR-4 and OVCAR-5 cells. Moreover OCT4, SOX2, KLF4 and NANOG were highly expressed in CD133+CXCR4+ sorted OVCAR-5 cells. Most strikingly CXCR4+CD133+ sorted OVCAR-5 and -4 cells formed the highest number of tumors when inoculated in nude mice compared to CD133−CXCR4−, CD133+CXCR4−, CD133−CXCR4+ cells. CXCR4+CD133+ OVCAR-5 cells were resistant to cisplatin, overexpressed the ABCG2 surface drug transporter and migrated toward the CXCR4 ligand, CXCL12. Moreover, when human ovarian cancer cells were isolated from 37 primary ovarian cancer, an extremely variable level of CXCR4 and CD133 expression was detected. Thus, in human ovarian cancer cells CXCR4 and CD133 expression identified a discrete population with stem cell properties that regulated tumor development and chemo resistance. This cell population represents a potential therapeutic target. PMID:26020117

Mitral Valve Prolapse (For Parents)

MedlinePlus

... develops after some sort of inflammatory condition, like endocarditis (infection of the inner lining of the heart) ... a bacterial infection of the heart valve (infective endocarditis). It very rarely happens during childhood. Many times ...

A discrimination model in waste plastics sorting using NIR hyperspectral imaging system.

PubMed

Zheng, Yan; Bai, Jiarui; Xu, Jingna; Li, Xiayang; Zhang, Yimin

2018-02-01

Classification of plastics is important in the recycling industry. A plastic identification model in the near infrared spectroscopy wavelength range 1000-2500 nm is proposed for the characterization and sorting of waste plastics using acrylonitrile butadiene styrene (ABS), polystyrene (PS), polypropylene (PP), polyethylene (PE), polyethylene terephthalate (PET), and polyvinyl chloride (PVC). The model is built by the feature wavelengths of standard samples applying the principle component analysis (PCA), and the accuracy, property and cross-validation of the model were analyzed. The model just contains a simple equation, center of mass coordinates, and radial distance, with which it is easy to develop classification and sorting software. A hyperspectral imaging system (HIS) with the identification model verified its practical application by using the unknown plastics. Results showed that the identification accuracy of unknown samples is 100%. All results suggested that the discrimination model was potential to an on-line characterization and sorting platform of waste plastics based on HIS. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ultraviolet Survey of CO and H2 in Diffuse Molecular Clouds: The Reflection of Two Photochemistry Regimes in Abundance Relationships

NASA Astrophysics Data System (ADS)

Sheffer, Y.; Rogers, M.; Federman, S. R.; Abel, N. P.; Gredel, R.; Lambert, D. L.; Shaw, G.

2008-11-01

We carried out a comprehensive far-UV survey of 12CO and H2 column densities along diffuse molecular Galactic sight lines. This sample includes new measurements of CO from HST spectra along 62 sight lines and new measurements of H2 from FUSE data along 58 sight lines. In addition, high-resolution optical data were obtained at the McDonald and European Southern Observatories, yielding new abundances for CH, CH+, and CN along 42 sight lines to aid in interpreting the CO results. These new sight lines were selected according to detectable amounts of CO in their spectra and provide information on both lower density (<=100 cm-3) and higher density diffuse clouds. A plot of log N(CO) versus log N(H2) shows that two power-law relationships are needed for a good fit of the entire sample, with a break located at log N(CO , cm -2) = 14.1 and log N(H2) = 20.4, corresponding to a change in production route for CO in higher density gas. Similar logarithmic plots among all five diatomic molecules reveal additional examples of dual slopes in the cases of CO versus CH (break at log N = 14.1, 13.0), CH+ versus H2 (13.1, 20.3), and CH+ versus CO (13.2, 14.1). We employ both analytical and numerical chemical schemes in order to derive details of the molecular environments. In the denser gas, where C2 and CN molecules also reside, reactions involving C+ and OH are the dominant factor leading to CO formation via equilibrium chemistry. In the low-density gas, where equilibrium chemistry studies have failed to reproduce the abundance of CH+, our numerical analysis shows that nonequilibrium chemistry must be employed for correctly predicting the abundances of both CH+ and CO.

Research and Development of Target Recognition and Location Crawling Platform based on Binocular Vision

NASA Astrophysics Data System (ADS)

Xu, Weidong; Lei, Zhu; Yuan, Zhang; Gao, Zhenqing

2018-03-01

The application of visual recognition technology in industrial robot crawling and placing operation is one of the key tasks in the field of robot research. In order to improve the efficiency and intelligence of the material sorting in the production line, especially to realize the sorting of the scattered items, the robot target recognition and positioning crawling platform based on binocular vision is researched and developed. The images were collected by binocular camera, and the images were pretreated. Harris operator was used to identify the corners of the images. The Canny operator was used to identify the images. Hough-chain code recognition was used to identify the images. The target image in the image, obtain the coordinates of each vertex of the image, calculate the spatial position and posture of the target item, and determine the information needed to capture the movement and transmit it to the robot control crawling operation. Finally, In this paper, we use this method to experiment the wrapping problem in the express sorting process The experimental results show that the platform can effectively solve the problem of sorting of loose parts, so as to achieve the purpose of efficient and intelligent sorting.

C III spectra in WC Wolf-Rayet stars - Does collisional excitation dominate?

NASA Technical Reports Server (NTRS)

Kastner, S. O.; Bhatia, A. K.

1993-01-01

A direct comparison of the spectra emitted by an improved collisionally excited C III atomic model, with observations of C III spectra in Wolf-Rayet WC stars, shows agreement for UV, visible, and near-infrared lines including lines usually considered to be recombination lines. The agreement implies high-density and temperature source conditions corresponding to log (Ne Te) is greater than 16 as a lower limit, whereas most current modeling assumes log (Ne Te) is less than 15.5. This raises questions concerning the photoionization/recombination assumptions on which most WR modeling is based. Recent models are discussed from this point of view.

Galaxy And Mass Assembly (GAMA): Improved emission lines measurements in four representative samples at 0.07

NASA Astrophysics Data System (ADS)

Rodrigues, M.; Foster, C.; Taylor, E. N.; Wright, A. H.; Hopkins, A. M.; Baldry, I.; Brough, S.; Bland-Hawthorn, J.; Cluver, M. E.; Lara-López, M. A.; Liske, J.; López-Sánchez, Á. R.; Pimbblet, K. A.

2016-05-01

This paper presents a new catalog of emission lines based on the GAMA II data for galaxies between 0.07 9.4 at z ~ 0.1 and log M∗> 10.6 at z ~ 0.30. We have developed a dedicated code called MARVIN that automates the main steps of the data analysis, but imposes visual individual quality control of each measurement. We use this catalog to investigate how the sample selection influences the shape of the stellar mass - metallicity relation. We find that commonly used selection criteria on line detections and by AGN rejection could affect the shape and dispersion of the high-mass end of the M - Z relation. For log M∗> 10.6, common selection criteria reject about 65% of the emission-line galaxies. We also find that the relation does not evolve significantly from z = 0.07 to z = 0.34 in the range of stellar mass for which the samples are representative (log M∗> 10.6). For lower stellar masses (log M∗< 10.2) we are able to show that the observed 0.15 dex metallicity decrease in the same redshift range is a consequence of a color bias arising from selecting targets in the r-band. We highlight that this color selection bias affects all samples selected in r-band (e.g., GAMA and SDSS), even those drawn from volume-limited samples. Previously reported evolution of the M - Z relation at various redshifts may need to be revised to evaluate the effect of this selection bias.

Heterogeneous Multi-Robot Multi-Sensor Platform for Intruder Detection

DTIC Science & Technology

2009-09-15

propagation model, with variance τi: si ~ N(b0i + b1i *logDi, τ i). The initial parameters (b0i, b1i, τ i ) of the model are unknown, and the training...that the advantage of MOO-learned mode would become more significant over time compared with the other mode. 1 2 3 4 5 6 7 0 0.05 0.1 0.15 0.2...nondominated sorting genetic algorithm for multi-objective optimization: NSGA-II,” in Parallel Problem Solving from Nature (PPSN VI), M. Schoenauer

A solar tornado observed by EIS. Plasma diagnostics

NASA Astrophysics Data System (ADS)

Levens, P. J.; Labrosse, N.; Fletcher, L.; Schmieder, B.

2015-10-01

Context. The term "solar tornadoes" has been used to describe apparently rotating magnetic structures above the solar limb, as seen in high resolution images and movies from the Atmospheric Imaging Assembly (AIA) aboard the Solar Dynamics Observatory (SDO). These often form part of the larger magnetic structure of a prominence, however the links between them remain unclear. Here we present plasma diagnostics on a tornado-like structure and its surroundings, seen above the limb by the Extreme-ultraviolet Imaging Spectrometer (EIS) aboard the Hinode satellite. Aims: We aim to extend our view of the velocity patterns seen in tornado-like structures with EIS to a wider range of temperatures and to use density diagnostics, non-thermal line widths, and differential emission measures to provide insight into the physical characteristics of the plasma. Methods: Using Gaussian fitting to fit and de-blend the spectral lines seen by EIS, we calculated line-of-sight velocities and non-thermal line widths. Along with information from the CHIANTI database, we used line intensity ratios to calculate electron densities at each pixel. Using a regularised inversion code we also calculated the differential emission measure (DEM) at different locations in the prominence. Results: The split Doppler-shift pattern is found to be visible down to a temperature of around log T = 6.0. At temperatures lower than this, the pattern is unclear in this data set. We obtain an electron density of log ne = 8.5 when looking towards the centre of the tornado structure at a plasma temperature of log T = 6.2, as compared to the surroundings of the tornado structure where we find log ne to be nearer 9. Non-thermal line widths show broader profiles at the tornado location when compared to the surrounding corona. We discuss the differential emission measure in both the tornado and the prominence body, which suggests that there is more contribution in the tornado at temperatures below log T = 6.0 than in the prominence. A movie is available in electronic form at http://www.aanda.org

Spectroscopic Study of a Dark Lane and a Cool Loop in a Solar Limb Active Region by Hinode/EIS

NASA Astrophysics Data System (ADS)

Lee, K.; Imada, S.; Moon, Y.; Lee, J.

2012-12-01

We investigate a cool loop and a dark lane over a limb active region on 2007 March 14 by the Hinode/EUV Imaging Spectrometer (EIS). The cool loop is clearly seen in the EIS spectral lines formed at the transition region temperature (log T = 5.8). The dark lane is characterized by an elongated faint structure in coronal spectral lines (log T = 5.8 - 6.1) and rooted on a bright point. We examine their electron densities, Doppler velocities, and non-thermal velocities as a function of distance from the limb using the spectral lines formed at different temperatures (log T = 5.4 - 6.4). The electron densities of the cool loop and the dark lane are derived from the density sensitive line pairs of Mg VII, Fe XII, and Fe XIV spectra. Under the hydrostatic equilibrium and isothermal assumption, we determine their temperatures from the density scale height. Comparing the scale height temperatures to the peak formation temperatures of the spectral lines, we note that the scale height temperature of the cool loop is consistent with a peak formation temperature of the Mg VII (log T = 5.8) and the scale height temperature of the dark lane is close to a peak formation temperature of the Fe XII and Fe XIII (log T = 6.1 - 6.2). It is interesting to note that the structures of the cool loop and the dark lane are most visible in these temperature lines. While the non-thermal velocity in the cool loop slightly decreases (less than 7 km {s-1}) along the loop, that in the dark lane sharply falls off with height. The variation of non-thermal velocity with height in the cool loop and the dark lane is contrast to that in off-limb polar coronal holes which are considered as source of the fast solar wind. Such a decrease in the non-thermal velocity may be explained by wave damping near the solar surface or turbulence due to magnetic reconnection near the bright point.

Heat Source - Materials Interactions during Fusion Welding.

DTIC Science & Technology

1982-04-30

calcium, chromium and tungsten lines have been identified. In the titanium spectra (Figure 6), argon, titanium, aluminum, calcium and tungsten lines have...Stainless Steel," Weld J.,5(12), 1974, p. 5 4 9 -r. 3. C. B. Shaw, Jr. "Diagnostic Studies of the GTAW Arc," Weld J. 54(2), p.33-s. 4. J. F. Key, M. E...black body radiation curve. The diagram is valid only in the manganese m.p.-b.p. range. Fig.-8 Chromium isopleths plotted against log of pressure, log

Fast and straightforward analysis approach of charge transport data in single molecule junctions.

PubMed

Zhang, Qian; Liu, Chenguang; Tao, Shuhui; Yi, Ruowei; Su, Weitao; Zhao, Cezhou; Zhao, Chun; Dappe, Yannick J; Nichols, Richard J; Yang, Li

2018-08-10

In this study, we introduce an efficient data sorting algorithm, including filters for noisy signals, conductance mapping for analyzing the most dominant conductance group and sub-population groups. The capacity of our data analysis process has also been corroborated on real experimental data sets of Au-1,6-hexanedithiol-Au and Au-1,8-octanedithiol-Au molecular junctions. The fully automated and unsupervised program requires less than one minute on a standard PC to sort the data and generate histograms. The resulting one-dimensional and two-dimensional log histograms give conductance values in good agreement with previous studies. Our algorithm is a straightforward, fast and user-friendly tool for single molecule charge transport data analysis. We also analyze the data in a form of a conductance map which can offer evidence for diversity in molecular conductance. The code for automatic data analysis is openly available, well-documented and ready to use, thereby offering a useful new tool for single molecule electronics.

Microfluidic, marker-free isolation of circulating tumor cells from blood samples

PubMed Central

Karabacak, Nezihi Murat; Spuhler, Philipp S; Fachin, Fabio; Lim, Eugene J; Pai, Vincent; Ozkumur, Emre; Martel, Joseph M; Kojic, Nikola; Smith, Kyle; Chen, Pin-i; Yang, Jennifer; Hwang, Henry; Morgan, Bailey; Trautwein, Julie; Barber, Thomas A; Stott, Shannon L; Maheswaran, Shyamala; Kapur, Ravi; Haber, Daniel A; Toner, Mehmet

2014-01-01

The ability to isolate and analyze rare circulating tumor cells (CTCs) has the potential to further our understanding of cancer metastasis and enhance the care of cancer patients. In this protocol, we describe the procedure for isolating rare CTCs from blood samples by using tumor antigen–independent microfluidic CTC-iChip technology. The CTC-iChip uses deterministic lateral displacement, inertial focusing and magnetophoresis to sort up to 107 cells/s. By using two-stage magnetophoresis and depletion antibodies against leukocytes, we achieve 3.8-log depletion of white blood cells and a 97% yield of rare cells with a sample processing rate of 8 ml of whole blood/h. The CTC-iChip is compatible with standard cytopathological and RNA-based characterization methods. This protocol describes device production, assembly, blood sample preparation, system setup and the CTC isolation process. Sorting 8 ml of blood sample requires 2 h including setup time, and chip production requires 2–5 d. PMID:24577360

A new technology for automatic identification and sorting of plastics for recycling.

PubMed

Ahmad, S R

2004-10-01

A new technology for automatic sorting of plastics, based upon optical identification of fluorescence signatures of dyes, incorporated in such materials in trace concentrations prior to product manufacturing, is described. Three commercial tracers were selected primarily on the basis of their good absorbency in the 310-370 nm spectral band and their identifiable narrow-band fluorescence signatures in the visible band of the spectrum when present in binary combinations. This absorption band was selected because of the availability of strong emission lines in this band from a commercial Hg-arc lamp and high fluorescence quantum yields of the tracers at this excitation wavelength band. The plastics chosen for tracing and identification are HDPE, LDPE, PP, EVA, PVC and PET and the tracers were compatible and chemically non-reactive with the host matrices and did not affect the transparency of the plastics. The design of a monochromatic and collimated excitation source, the sensor system are described and their performances in identifying and sorting plastics doped with tracers at a few parts per million concentration levels are evaluated. In an industrial sorting system, the sensor was able to sort 300 mm long plastic bottles at a conveyor belt speed of 3.5 m.sec(-1) with a sorting purity of -95%. The limitation was imposed due to mechanical singulation irregularities at high speed and the limited processing speed of the computer used.

Intracellular flow cytometry may be combined with good quality and high sensitivity RT-qPCR analysis.

PubMed

Sandstedt, Mikael; Jonsson, Marianne; Asp, Julia; Dellgren, Göran; Lindahl, Anders; Jeppsson, Anders; Sandstedt, Joakim

2015-12-01

Flow cytometry (FCM) has become a well-established method for analysis of both intracellular and cell-surface proteins, while quantitative RT-PCR (RT-qPCR) is used to determine gene expression with high sensitivity and specificity. Combining these two methods would be of great value. The effects of intracellular staining on RNA integrity and RT-qPCR sensitivity and quality have not, however, been fully examined. We, therefore, intended to assess these effects further. Cells from the human lung cancer cell line A549 were fixed, permeabilized and sorted by FCM. Sorted cells were analyzed using RT-qPCR. RNA integrity was determined by RNA quality indicator analysis. A549 cells were then mixed with cells of the mouse cardiomyocyte cell line HL-1. A549 cells were identified by the cell surface marker ABCG2, while HL-1 cells were identified by intracellular cTnT. Cells were sorted and analyzed by RT-qPCR. Finally, cell cultures from human atrial biopsies were used to evaluate the effects of fixation and permeabilization on RT-qPCR analysis of nonimmortalized cells stored prior to analysis by FCM. A large amount of RNA could be extracted even when cells had been fixed and permeabilized. Permeabilization resulted in increased RNA degradation and a moderate decrease in RT-qPCR sensitivity. Gene expression levels were also affected to a moderate extent. Sorted populations from the mixed A549 and HL-1 cell samples showed gene expression patterns that corresponded to FCM data. When samples were stored before FCM sorting, the RT-qPCR analysis could still be performed with high sensitivity and quality. In summary, our results show that intracellular FCM may be performed with only minor impairment of the RT-qPCR sensitivity and quality when analyzing sorted cells; however, these effects should be considered when comparing RT-qPCR data of not fixed samples with those of fixed and permeabilized samples. © 2015 International Society for Advancement of Cytometry.

An EXCEL macro for importing log ASCII standard (LAS) files into EXCEL worksheets

NASA Astrophysics Data System (ADS)

Özkaya, Sait Ismail

1996-02-01

An EXCEL 5.0 macro is presented for converting a LAS text file into an EXCEL worksheet. Although EXCEL has commands for importing text files and parsing text lines, LAS files must be decoded line-by-line because three different delimiters are used to separate fields of differing length. The macro is intended to eliminate manual decoding of LAS version 2.0. LAS is a floppy disk format for storage and transfer of log data as text files. LAS was proposed by the Canadian Well Logging Society. The present EXCEL macro decodes different sections of a LAS file, separates, and places the fields into different columns of an EXCEL worksheet. To import a LAS file into EXCEL without errors, the file must not contain any unrecognized symbols, and the data section must be the last section. The program does not check for the presence of mandatory sections or fields as required by LAS rules. Once a file is incorporated into EXCEL, mandatory sections and fields may be inspected visually.

IMPROVED V I log(gf) VALUES AND ABUNDANCE DETERMINATIONS IN THE PHOTOSPHERES OF THE SUN AND METAL-POOR STAR HD 84937

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lawler, J. E.; Wood, M. P.; Den Hartog, E. A.

2015-01-01

New emission branching fraction measurements for 836 lines of the first spectrum of vanadium (V I) are determined from hollow cathode lamp spectra recorded with the National Solar Observatory 1 m Fourier transform spectrometer (FTS) and a high-resolution echelle spectrometer. The branching fractions are combined with recently published radiative lifetimes from laser-induced fluorescence measurements to determine accurate absolute atomic transition probabilities for the 836 lines. The FTS data are also used to extract new hyperfine structure A coefficients for 26 levels of neutral vanadium. These new laboratory data are applied to determine the V abundance in the Sun and metal-poormore » star HD 84937, yielding log ε(V) = 3.956 ± 0.004 (σ = 0.037) based on 93 V I lines and log ε(V) = 1.89 ± 0.03 (σ = 0.07) based on nine V I lines, respectively, using the Holweger-Müller 1D model. These new V I abundance values for the Sun and HD 84937 agree well with our earlier determinations based upon V II.« less

Abundance Variations and Flows in Plage Regions Observed with CDS/SOHO

NASA Astrophysics Data System (ADS)

Rank, G.; Bagalá, L. G.; Czaykowska, A.; Haerendel, G.

1999-10-01

We present results from CDS/SOHO observations of the spotless active region NOAA-8208, obtained on 28th April 1998 near disk center. MDI images show a bipolar magnetic configuration. The regions of enhanced He I emission correspond to the areas with strong magnetic flux and also with bright plage areas seen in Ca II and H-alpha images. A high correlation is found between intensity maps of the transition region lines He I (logTmax = 4.3), O III (logTmax = 5.0), and O V (logTmax = 5.4). The line-of-sight velocities of He I reveal a strong downflow in the plage areas. Further, the line-of-sight velocities of He I, O III, and O V are well correlated, showing that the downflow pattern exists up to temperatures of about 0.25 MK. At higher temperatures (Mg VIII at logTmax = 5.8) this flow is not detected, suggesting that material streams into the plage region from sideways in the high transition region. Maps of the electron density in the transition region have been constructed from several line ratios yielding densities of about 9.0 cm-3 in the plage regions, about dex 0.5 cm-3 higher compared to the surrounding. To study the spatial variation of the first ionization potential (FIP) effect, the abundance ratio has been mapped for the ion ratio MgVI/NeVI. The ratio is highly variable on spatial scales down to a few arcsec from photospheric values to enhancements of a factor of 10. The strongest FIP enhancements are not correlated with transition region line emission, but are found outside of the plage regions. Some areas of strong FIP enhancement appear stretched and elongated, suggesting that the material is confined in loop-like structures.

Improved Co I log(gf) & hfs data and Abundance Determinations in the Photospheres of the Sun & Metal-poor Star HD 84937

NASA Astrophysics Data System (ADS)

Lawler, James E.; Sneden, Chris; Cowan, John J.

2016-01-01

New emission branching fraction measurements for 898 lines of the first spectrum of cobalt (Co I) from hollow cathode lamp spectra recorded with a 1m Fourier transform spectrometer (FTS) and a high resolution echelle spectrometer are reported. Radiative lifetimes from laser induced fluorescence measurements are combined with the branching fractions to determine accurate log(gf)s for the 898 lines. Selected published hyperfine structure (hfs) constants for levels of neutral Co are used to generate complete hfs component patterns for 195 transitions of Co I. These new laboratory data are applied to determine the Co abundance in the Sun and metal-poor star HD 84937, yielding log eps(Co) = 4.955 ± 0.007 (sigma = 0.059) based on 82 Co I lines and log eps(Co) = 2.785 ± 0.008 (sigma = 0.065) based on 66 Co I lines respectively. A Saha balance test on the photosphere of HD 84937 is performed using 16 UV lines of Co II, and good agreement is found with the Co I result in this metal-poor ([Fe I /H] = -2.32, [Fe II /H] = -2.32) dwarf star. The resulting value of [Co/Fe] = +0.14 supports a rise of Co/Fe at low metallicity that has been suggested in other studies. These new Co I data are part of a continuing effort to explore the limits of 1D/LTE photospheric models in metal-poor stars and to determine the relative abundance of Fe-group elements at low metallicity. This work is supported in part by NASA grant NNX10AN93G (J.E.L.), by NSF grant AST-1211055 (J.E.L.), and by NSF grant AST-1211585 (C.S.).

Massively parallel algorithms for trace-driven cache simulations

NASA Technical Reports Server (NTRS)

Nicol, David M.; Greenberg, Albert G.; Lubachevsky, Boris D.

1991-01-01

Trace driven cache simulation is central to computer design. A trace is a very long sequence of reference lines from main memory. At the t(exp th) instant, reference x sub t is hashed into a set of cache locations, the contents of which are then compared with x sub t. If at the t sup th instant x sub t is not present in the cache, then it is said to be a miss, and is loaded into the cache set, possibly forcing the replacement of some other memory line, and making x sub t present for the (t+1) sup st instant. The problem of parallel simulation of a subtrace of N references directed to a C line cache set is considered, with the aim of determining which references are misses and related statistics. A simulation method is presented for the Least Recently Used (LRU) policy, which regradless of the set size C runs in time O(log N) using N processors on the exclusive read, exclusive write (EREW) parallel model. A simpler LRU simulation algorithm is given that runs in O(C log N) time using N/log N processors. Timings are presented of the second algorithm's implementation on the MasPar MP-1, a machine with 16384 processors. A broad class of reference based line replacement policies are considered, which includes LRU as well as the Least Frequently Used and Random replacement policies. A simulation method is presented for any such policy that on any trace of length N directed to a C line set runs in the O(C log N) time with high probability using N processors on the EREW model. The algorithms are simple, have very little space overhead, and are well suited for SIMD implementation.

Proposed standard-weight (W(s)) equations for kokanee, golden trout and bull trout

USGS Publications Warehouse

Hyatt, M.H.; Hubert, W.A.

2000-01-01

We developed standard-weight (W(s)) equations for kokanee (lacustrine Oncorhynchus nerka), golden trout (O. aguabonita), and bull trout (Salvelinus confluentus) using the regression-line-percentile technique. The W(s) equation for kokanee of 120-550 mm TL is log10 W(s) = -5.062 + 3.033 log10 TL, when W(s) is in grams and TL is total length in millimeters; the English-unit equivalent is log10 W(s) = -3.458 + 3.033 log10 TL, when W(s) is in pounds and TL is total length in inches. The W(s) equation for golden trout of 120-530 mm TL is log10 W(s) = -5.088 + 3.041 log10 TL, with the English-unit equivalent being log10 W(s) = -3.473 + 3.041 log10 TL. The W(s) equation for bull trout of 120-850 mm TL is log10 W(s) = -5.327 + 3.115 log10 TL, with the English-unit equivalent being log10 W(s) = -3.608 + 3.115 log10 TL.

Isolation, purification, culture and characterisation of myoepithelial cells from normal and neoplastic canine mammary glands using a magnetic-activated cell sorting separation system.

PubMed

Sánchez-Céspedes, R; Maniscalco, L; Iussich, S; Martignani, E; Guil-Luna, S; De Maria, R; Martín de Las Mulas, J; Millán, Y

2013-08-01

Mammary gland tumours, the most common malignant neoplasm in bitches, often display myoepithelial (ME) cell proliferation. The aim of this study was to isolate, purify, culture and characterise ME cells from normal and neoplastic canine mammary glands. Monodispersed cells from three normal canine mammary glands and five canine mammary tumours were incubated with an anti-Thy1 antibody and isolated by magnetic-activated cell sorting (MACS). Cells isolated from two normal glands (cell lines CmME-N1 and CmME-N2) and four tumours (cell lines CmME-K1 from a complex carcinoma, CmME-K2 from a simple tubulopapillary carcinoma, and CmME-K3 and CmME-K4 from two carcinomas within benign tumours) were cultured in supplemented DMEM/F12 media for 40days. Cell purity was >90%. Tumour-derived ME cell lines exhibited heterogeneous morphology, growth patterns and immunocytochemical expression of cytokeratins, whereas cell lines from normal glands retained their morphology and levels of cytokeratin expression during culture. Cell lines from normal glands and carcinomas within benign tumours grew more slowly than those from simple and complex carcinomas. This methodology has the potential to be used for in vitro analysis of the role of ME cells in the growth and progression of canine mammary tumours. Copyright © 2013 Elsevier Ltd. All rights reserved.

Solar abundance of silicon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holweger, H.

1973-07-01

An analysis of 19 photospheric Si I lines whose oscillator strengths have recently been detertmined by Garz (1973) leads to a solar abundance of silicon, log epsilon /sub Si/ = 7.65 plus or minus 0.07, on the scale where log epsilon /sub H/ = 12. Together with the sodium abundance determained earlier by the same method, a solar abundance ratio /sup epsilon /Na//sup epsilon /Si = 0.045 ( plus or minus 10%) results. Within the error limits this a grees wtth the meteoritic ratio found in carbonaceous chondrites. Results concerning line-broadening by hydrogen are discussed. (auth)

ESCRT-II/Vps25 constrains digit number by endosome-mediated selective modulation of FGF-SHH signaling.

PubMed

Handschuh, Karen; Feenstra, Jennifer; Koss, Matthew; Ferretti, Elisabetta; Risolino, Maurizio; Zewdu, Rediet; Sahai, Michelle A; Bénazet, Jean-Denis; Peng, Xiao P; Depew, Michael J; Quintana, Laura; Sharpe, James; Wang, Baolin; Alcorn, Heather; Rivi, Roberta; Butcher, Stephen; Manak, J Robert; Vaccari, Thomas; Weinstein, Harel; Anderson, Kathryn V; Lacy, Elizabeth; Selleri, Licia

2014-10-23

Sorting and degradation of receptors and associated signaling molecules maintain homeostasis of conserved signaling pathways during cell specification and tissue development. Yet, whether machineries that sort signaling proteins act preferentially on different receptors and ligands in different contexts remains mysterious. Here, we show that Vacuolar protein sorting 25, Vps25, a component of ESCRT-II (Endosomal Sorting Complex Required for Transport II), directs preferential endosome-mediated modulation of FGF signaling in limbs. By ENU-induced mutagenesis, we isolated a polydactylous mouse line carrying a hypomorphic mutation of Vps25 (Vps25(ENU)). Unlike Vps25-null embryos we generated, Vps25(ENU/ENU) mutants survive until late gestation. Their limbs display FGF signaling enhancement and consequent hyperactivation of the FGF-SHH feedback loop causing polydactyly, whereas WNT and BMP signaling remain unperturbed. Notably, Vps25(ENU/ENU) Mouse Embryonic Fibroblasts exhibit aberrant FGFR trafficking and degradation; however, SHH signaling is unperturbed. These studies establish that the ESCRT-II machinery selectively limits FGF signaling in vertebrate skeletal patterning.

Hunting for extremely metal-poor emission-line galaxies in the Sloan Digital Sky Survey: MMT and 3.5 m APO observations

NASA Astrophysics Data System (ADS)

Izotov, Y. I.; Thuan, T. X.; Guseva, N. G.

2012-10-01

We present 6.5-m MMT and 3.5 m APO spectrophotometry of 69 H ii regions in 42 low-metallicity emission-line galaxies, selected from the data release 7 of the Sloan Digital Sky Survey to have mostly [O iii]λ4959/Hβ ≲ 1 and [N ii]λ6583/Hβ ≲ 0.1. The electron temperature-sensitive emission line [O iii] λ4363 is detected in 53 H ii regions allowing a direct abundance determination. The oxygen abundance in the remaining 16 H ii regions is derived using a semi-empirical method. The oxygen abundance of the galaxies in our sample ranges from 12 + log O/H ~ 7.1 to ~7.9, with 14 H ii regions in 7 galaxies with 12 + log O/H ≤ 7.35. In 5 of the latter galaxies, the oxygen abundance is derived here for the first time. Including other known extremely metal-deficient emission-line galaxies from the literature, e.g. SBS 0335-052W, SBS 0335-052E and I Zw 18, we have compiled a sample of the 17 most metal-deficient (with 12 + log O/H ≤ 7.35) emission-line galaxies known in the local universe. There appears to be a metallicity floor at 12 + log O/H ~ 6.9, suggesting that the matter from which dwarf emission-line galaxies formed was pre-enriched to that level by e.g. Population III stars. Based on observations with the Multiple Mirror telescope (MMT) and the 3.5 m Apache Point Observatory (APO). The MMT is operated by the MMT Observatory (MMTO), a joint venture of the Smithsonian Institution and the University of Arizona. The Apache Point Observatory 3.5-m telescope is owned and operated by the Astrophysical Research Consortium.Figures 1-3 and Tables 2-8 are available in electronic form at http://www.aanda.org

Deuterium Abundance Toward G191-B2B: Results from the Far Ultraviolet Spectroscopic Explorer (FUSE) Mission

NASA Technical Reports Server (NTRS)

Lemoine, M.; Vidal-Madjar, A.; Hebrard, G.; Desert, J.-M.; Ferlet, R.; LecavelierdesEtangs, A.; Howk, J. C.; Andre, M.; Blair, W. P.; Friedman, S. D.;

EUVE observations of Algol: Detection of a continuum and implications for the coronal (Fe/H) abundance

NASA Technical Reports Server (NTRS)

Stern, Robert A.; Lemen, James R.; Schmitt, Jurgen H. M. M.; Pye, John P.

1995-01-01

We report results from the first extreme ultraviolet spectrum of the prototypical eclipsing binary Algol (beta Per), obtained with the spectrometers on the Extreme Ultraviolet Explorer (EUVE). The Algol spectrum in the 80-350 A range is dominated by emission lines of Fe XVI-XXIV, and the He II 304 A line. The Fe emission is characteristic of high-temperature plasma at temperatures up to at least log T approximately 7.3 K. We have successfully modeled the observed quiescent spectrum using a continuous emission measure distribution with the bulk of the emitting material at log T greater than 6.5. We are able to adequately fit both the coronal lines and continuum data with a cosmic abundance plasma, but only if Algol's quiescent corona is dominated by material at log T greater than 7.5, which is physically ruled out by prior X-ray observations of the quiescent Algol spectrum. Since the coronal (Fe/H) abundance is the principal determinant of the line-to-continuum ratio in the EUV, allowing the abundance to be a free parameter results in models with a range of best-fit abundances approximately = 15%-40% of solar photospheric (Fe/H). Since Algol's photospheric (Fe/H) appears to be near-solar, the anomalous EUV line-to-continuum ratio could either be the result of element segregation in the coronal formation process, or other, less likely mechanisms that may enhance the continuum with respect to the lines.

Proposed standard-weight equations for brook trout

USGS Publications Warehouse

Hyatt, M.W.; Hubert, W.A.

2001-01-01

Weight and length data were obtained for 113 populations of brook trout Salvelinus fontinalis across the species' geographic range in North America to estimate a standard-weight (Ws) equation for this species. Estimation was done by applying the regression-line-percentile technique to fish of 120-620 mm total length (TL). The proposed metric-unit (g and mm) equation is log10Ws = -5.186 + 3.103 log10TL; the English-unit (lb and in) equivalent is log10Ws = -3.483 + 3.103 log10TL. No systematic length bias was evident in the relative-weight values calculated from these equations.

Fish connectivity mapping intermediate data files and outputs

EPA Pesticide Factsheets

RLWrankedLists.tar.gz:These lists linked to various chemical treatment conditions serve as the target collection of Cmap. Probes of the entire microarray are sorted based on their log fold changes over control conditions. RLWsignatures2015.tar.gz: These signatures linked to various chemical treatment conditions serve as queries in Cmap.This dataset is associated with the following publication:Wang , R., A. Biales , N. Garcia-Reyero, E. Perkins, D. Villeneuve, G. Ankley, and D. Bencic. Fish Connectivity Mapping: Linking Chemical Stressors by Their MOA-Driven Transcriptomic Profiles. BMC Genomics. BioMed Central Ltd, London, UK, 17(84): 1-20, (2016).

Structural and Sequence Stratigraphic Analysis of the Onshore Nile Delta, Egypt.

NASA Astrophysics Data System (ADS)

Barakat, Moataz; Dominik, Wilhelm

2010-05-01

The Nile Delta is considered the earliest known delta in the world. It was already described by Herodotus in the 5th Century AC. Nowadays; the Nile Delta is an emerging giant gas province in the Middle East with proven gas reserves which have more than doubled in size in the last years. The Nile Delta basin contains a thick sedimentary sequence inferred to extend from Jurassic to recent time. Structural styles and depositional environments varied during this period. Facies architecture and sequence stratigraphy of the Nile Delta are resolved using seismic stratigraphy based on (2D seismic lines) including synthetic seismograms and tying in well log data. Synthetic seismograms were constructed using sonic and density logs. The combination of structural interpretation and sequence stratigraphy of the development of the basin was resolved. Seven chrono-stratigraphic boundaries have been identified and correlated on seismic and well log data. Several unconformity boundaries also identified on seismic lines range from angular to disconformity type. Furthermore, time structure maps, velocity maps, depth structure maps as well as Isopach maps were constructed using seismic lines and log data. Several structural features were identified: normal faults, growth faults, listric faults, secondary antithetic faults and large rotated fault blocks of manly Miocene age. In some cases minor rollover structures could be identified. Sedimentary features such as paleo-channels were distinctively recognized. Typical Sequence stratigraphic features such as incised valley, clinoforms, topsets, offlaps and onlaps are identified and traced on the seismic lines allowing a good insight into sequence stratigraphic history of the Nile Delta most especially in the Miocene to Pliocene clastic sedimentary succession.

Pentatricopeptide 336 and mitochondrial sorting in cucumber

USDA-ARS?s Scientific Manuscript database

Cucumber is a unique model plant for organellar genetics because its three genomes show differential transmission: maternal for chloroplast, paternal for mitochondrial and bi-parental for nuclear. A cucumber line has been selected showing a paternally transmitted, strongly mosaic (MSC) phenotype as...

System Architecture For High Speed Sorting Of Potatoes

NASA Astrophysics Data System (ADS)

Marchant, J. A.; Onyango, C. M.; Street, M. J.

1989-03-01

This paper illustrates an industrial application of vision processing in which potatoes are sorted according to their size and shape at speeds of up to 40 objects per second. The result is a multi-processing approach built around the VME bus. A hardware unit has been designed and constructed to encode the boundary of the potatoes, to reducing the amount of data to be processed. A master 68000 processor is used to control this unit and to handle data transfers along the bus. Boundary data is passed to one of three 68010 slave processors each responsible for a line of potatoes across a conveyor belt. The slave processors calculate attributes such as shape, size and estimated weight of each potato and the master processor uses this data to operate the sorting mechanism. The system has been interfaced with a commercial grading machine and performance trials are now in progress.

Caveolin Transfection Results in Caveolae Formation but Not Apical Sorting of Glycosylphosphatidylinositol (GPI)-anchored Proteins in Epithelial Cells

PubMed Central

Lipardi, Concetta; Mora, Rosalia; Colomer, Veronica; Paladino, Simona; Nitsch, Lucio; Rodriguez-Boulan, Enrique; Zurzolo, Chiara

1998-01-01

Most epithelial cells sort glycosylphosphatidylinositol (GPI)-anchored proteins to the apical surface. The “raft” hypothesis, based on data mainly obtained in the prototype cell line MDCK, postulates that apical sorting depends on the incorporation of apical proteins into cholesterol/glycosphingolipid (GSL) rafts, rich in the cholesterol binding protein caveolin/VIP21, in the Golgi apparatus. Fischer rat thyroid (FRT) cells constitute an ideal model to test this hypothesis, since they missort both endogenous and transfected GPI- anchored proteins to the basolateral plasma membrane and fail to incorporate them into cholesterol/glycosphingolipid clusters. Because FRT cells lack caveolin, a major component of the caveolar coat that has been proposed to have a role in apical sorting of GPI- anchored proteins (Zurzolo, C., W. Van't Hoff, G. van Meer, and E. Rodriguez-Boulan. 1994. EMBO [Eur. Mol. Biol. Organ.] J. 13:42–53.), we carried out experiments to determine whether the lack of caveolin accounted for the sorting/clustering defect of GPI- anchored proteins. We report here that FRT cells lack morphological caveolae, but, upon stable transfection of the caveolin1 gene (cav1), form typical flask-shaped caveolae. However, cav1 expression did not redistribute GPI-anchored proteins to the apical surface, nor promote their inclusion into cholesterol/GSL rafts. Our results demonstrate that the absence of caveolin1 and morphologically identifiable caveolae cannot explain the inability of FRT cells to sort GPI-anchored proteins to the apical domain. Thus, FRT cells may lack additional factors required for apical sorting or for the clustering with GSLs of GPI-anchored proteins, or express factors that inhibit these events. Alternatively, cav1 and caveolae may not be directly involved in these processes. PMID:9456321

The NetLogger Toolkit V2.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gunter, Dan; Lee, Jason; Stoufer, Martin

2003-03-28

The NetLogger Toolkit is designed to monitor, under actual operating conditions, the behavior of all the elements of the application-to-application communication path in order to determine exactly where time is spent within a complex system Using NetLogger, distnbuted application components are modified to produce timestamped logs of "interesting" events at all the critical points of the distributed system Events from each component are correlated, which allov^ one to characterize the performance of all aspects of the system and network in detail. The NetLogger Toolkit itself consists of four components an API and library of functions to simplify the generation ofmore » application-level event logs, a set of tools for collecting and sorting log files, an event archive system, and a tool for visualization and analysis of the log files In order to instrument an application to produce event logs, the application developer inserts calls to the NetLogger API at all the critical points in the code, then links the application with the NetLogger library All the tools in the NetLogger Toolkit share a common log format, and assume the existence of accurate and synchronized system clocks NetLogger messages can be logged using an easy-to-read text based format based on the lETF-proposed ULM format, or a binary format that can still be used through the same API but that is several times faster and smaller, with performance comparable or better than binary message formats such as MPI, XDR, SDDF-Binary, and PBIO. The NetLogger binary format is both highly efficient and self-describing, thus optimized for the dynamic message construction and parsing of application instrumentation. NetLogger includes an "activation" API that allows NetLogger logging to be turned on, off, or modified by changing an external file This IS useful for activating logging in daemons/services (e g GndFTP server). The NetLogger reliability API provides the ability to specify backup logging locations and penodically try to reconnect broken TCP pipe. A typical use for this is to store data on local disk while net is down. An event archiver can log one or more incoming NetLogger streams to a local disk file (netlogd) or to a mySQL database (netarchd). We have found exploratory, visual analysis of the log event data to be the most useful means of determining the causes of performance anomalies The NetLogger Visualization tool, niv, has been developed to provide a flexible and interactive graphical representation of system-level and application-level events.« less

Sawmilling practices for hardwoods

Treesearch

John. Dramm

2013-01-01

The Sawmill Improvement Program (SIP) provides guidance to improve the bottom line of a sawmill both by recovering more lumber from a log and by using simplified procedures to produce more grade lumber. Lessons learned from SIP have led to improved yields of grade lumber through improved log manufacturing, reducing sawing variation by using thinner kerf saws and better...

A targeted neuroglial reporter line generated by homologous recombination in human embryonic stem cells.

PubMed

Xue, Haipeng; Wu, Sen; Papadeas, Sophia T; Spusta, Steve; Swistowska, Anna Maria; MacArthur, Chad C; Mattson, Mark P; Maragakis, Nicholas J; Capecchi, Mario R; Rao, Mahendra S; Zeng, Xianmin; Liu, Ying

2009-08-01

In this study, we targeted Olig2, a basic helix-loop-helix transcription factor that plays an important role in motoneuron and oligodendrocyte development, in human embryonic stem cell (hESC) line BG01 by homologous recombination. One allele of Olig2 locus was replaced by a green fluorescent protein (GFP) cassette with a targeting efficiency of 5.7%. Targeted clone R-Olig2 (like the other clones) retained pluripotency, typical hESC morphology, and a normal parental karyotype 46,XY. Most importantly, GFP expression recapitulated endogenous Olig2 expression when R-Olig2 was induced by sonic hedgehog and retinoic acid, and GFP-positive cells could be purified by fluorescence-activated cell sorting. Consistent with previous reports on rodents, early GFP-expressing cells appeared biased to a neuronal fate, whereas late GFP-expressing cells appeared biased to an oligodendrocytic fate. This was corroborated by myoblast coculture, transplantation into the rat spinal cords, and whole genome expression profiling. The present work reports an hESC reporter line generated by homologous recombination targeting a neural lineage-specific gene, which can be differentiated and sorted to obtain pure neural progenitor populations.

Heterogeneity of Chlorinity distribution within gas hydrate reservoir at Daini-Atsumi knoll, based on logging data analysis

NASA Astrophysics Data System (ADS)

Suzuki, K.; Takayama, T.; Fujii, T.

2016-12-01

We will present possible heterogeneity of pore-water salinity within methane hydrate reservoir of Daini-Atsumi knoll, on the basis of Logging-while-drilling (LWD) data and several kind of wire-line logging dataset. The LWD and the wire-line logging had been carried out during 2012 to 2013, before/after the first offshore gas-production-test from marine-methane-hydrate reservoir at Daini-Atsumi Knoll along the northeast Nankai trough. Several data from the logging, especially data from the reservoir saturation tool; RST, gave us some possible interpretation for heterogeneity distribution of chlorinity within the methane-hydrate reservoir. The computed pore-water chlorinity could be interpreted as condense of chlorinity at gas-hydrate formation. This year, we drilled several number of wells at Daini-Atsumi Knoll, again for next gas production test, and we have also found out possibility of chlorinity heterogeneity from LWD data of Neutron-capture cross section; i.e. Sigma. The distribution of chlorinity within gas-hydrate reservoir may help our understanding of gas hydrate-crystallization and/or dissociation in turbidite reservoir at Daini-Atsumi Knoll. This research is conducted as a part of the Research Consortium for Methane Hydrate Resource in Japan (MH21 Research consortium).

Conventional occlusion versus pharmacologic penalization for amblyopia.

PubMed

Li, Tianjing; Shotton, Kate

2009-10-07

Amblyopia is defined as defective visual acuity in one or both eyes without demonstrable abnormality of the visual pathway, and is not immediately resolved by wearing glasses. To assess the effectiveness and safety of conventional occlusion versus atropine penalization for amblyopia. We searched CENTRAL, MEDLINE, EMBASE, LILACS, the WHO International Clinical Trials Registry Platform, preference lists, science citation index and ongoing trials up to June 2009. We included randomized/quasi-randomized controlled trials comparing conventional occlusion to atropine penalization for amblyopia. Two authors independently screened abstracts and full text articles, abstracted data, and assessed the risk of bias. Three trials with a total of 525 amblyopic eyes were included. One trial was assessed as having a low risk of bias among these three trials, and one was assessed as having a high risk of bias.Evidence from three trials suggests atropine penalization is as effective as conventional occlusion. One trial found similar improvement in vision at six and 24 months. At six months, visual acuity in the amblyopic eye improved from baseline 3.16 lines in the occlusion and 2.84 lines in the atropine group (mean difference 0.034 logMAR; 95% confidence interval (CI) 0.005 to 0.064 logMAR). At 24 months, additional improvement was seen in both groups; but there continued to be no meaningful difference (mean difference 0.01 logMAR; 95% CI -0.02 to 0.04 logMAR). The second trial reported atropine to be more effective than occlusion. At six months, visual acuity improved 1.8 lines in the patching group and 3.4 lines in the atropine penalization group, and was in favor of atropine (mean difference -0.16 logMAR; 95% CI -0.23 to -0.09 logMAR). Different occlusion modalities were used in these two trials. The third trial had inherent methodological flaws and limited inference could be drawn.No difference in ocular alignment, stereo acuity and sound eye visual acuity between occlusion and atropine penalization was found. Although both treatments were well tolerated, compliance was better in atropine. Atropine penalization costs less than conventional occlusion. The results indicate that atropine penalization is as effective as conventional occlusion. Both conventional occlusion and atropine penalization produce visual acuity improvement in the amblyopic eye. Atropine penalization appears to be as effective as conventional occlusion, although the magnitude of improvement differed among the three trials. Atropine penalization can be used as first line treatment for amblyopia.

Hazardous substances in indoor dust emitted from waste TV recycling facility.

PubMed

Deng, Jingjing; Guo, Jie; Zhou, Xiaoyu; Zhou, Peng; Fu, Xiaoxu; Zhang, Wei; Lin, Kuangfei

2014-06-01

Various hazardous substances contained in waste TV sets might be released into environment via dust during recycling activities. Two brominated flame retardants (BFRs), polybrominated diphenyl ethers (PBDEs), and tetrabromobisphenol A (TBBPA), and five kinds of heavy metals (Cu, Pb, Cd, Cr, and Ni) were detected in indoor dust collected from two workshops (TV dismantling workshop and subsequent recycling workshop). PBDEs concentrations in dust from waste wires recycling line (722,000 ng/g) were the highest among the studied sites, followed by those in manual dismantling-sorting line (117,000 ng/g), whereas TBBPA concentrations were the highest in manual dismantling-sorting line (557 ng/g) and printed circuit board (PCB) recycling line (428 ng/g). For heavy metals, Cu and Pb were the most enriched metals in all dust samples. The highest concentration of Pb (22,900 mg/kg) was found in TV dismantling workshop-floor dust. Meanwhile, Cu was the predominant metal in dust from the PCB recycling line, especially in dust collected from electrostatic separation area (42,700 mg/kg). Occupational exposure assessment results showed that workers were the most exposed to BDE-209 among the four PBDE congeners (BDE-47, BDE-99, BDE-153, and BDE-209) in both workshops. The hazard quotient (HQ) indicated that noncancerous effects were unlikely for both BFRs and heavy metals (HQ < 1), and carcinogenic risks for Cd, Cr, and Ni (risk < 10(-6)) on workers in two workshops were relatively low.

Improved Cr II log(gf)s and Cr Abundances in the Photospheres of the Sun and Metal-Poor Star HD 84937

NASA Astrophysics Data System (ADS)

Lawler, James E.; Sneden, Chris; Nave, Gillian; Den Hartog, Elizabeth; Emrahoglu, Nuri; Cowan, John J.

2017-01-01

New laser induced fluorescence (LIF) data for eight levels of singly ionized chromium (Cr) and emission branching fraction (BF) measurements for 183 lines of the second spectrum of chromium (Cr II) are reported. A goal of this study is to reconcile Solar and stellar Cr abundance values based on Cr I and Cr II lines. Analyses of eighteen spectra from three Fourier Transform Spectrometers supplemented with ultraviolet spectra from a high resolution echelle spectrometer yield the BF measurements. Radiative lifetimes from LIF measurements are used to convert the BFs to absolute transition probabilities. These new laboratory data are applied to determine the Cr abundance log eps in the Sun and metal-poor star HD 84937. The mean result in the Sun is = 5.624 ± 0.009 compared to = 5.644 ± 0.006 on a scale with the H abundance log eps(H) = 12. Similarily the photosphere of HD 84937 is found to be in Saha balance with = 3.417 ± 0.006 and 0 eV) > = 3.374 ± 0.011 for this dwarf star. The resonance (E.P. = 0 eV) lines of Cr I reveal overionization of the ground level of neutral Cr. We find a correlation of Cr with the iron-peak element Ti, suggesting an associated or related nucleosynthetic production. Four iron-peak elements (Cr along with Ti, V and Sc) appear to have a similar (or correlated) production history - other iron-peak elements appear not to be associated with Cr.This work is supported in part by NASA grant NNX16AE96G (J.E.L.), by NSF grant AST-1516182 (J.E.L. & E.D.H.), by NASA interagency agreement NNH10AN381 (G.N.), and NSF grant AST-1211585 (C.S.). Postdoctoral research support for N. E. is from the Technological and Scientific Research Council of Turkey (TUBITAK).

Quality control in the secretory assembly line.

PubMed Central

Helenius, A

2001-01-01

As a rule, only proteins that have reached a native, folded and assembled structure are transported to their target organelles and compartments within the cell. In the secretory pathway of eukaryotic cells, this type of sorting is particularly important. A variety of molecular mechanisms are involved that distinguish between folded and unfolded proteins, modulate their intracellular transport, and induce degradation if they fail to fold. This phenomenon, called quality control, occurs at several levels and involves different types of folding sensors. The quality control system provides a stringent and versatile molecular sorting system that guaranties fidelity of protein expression in the secretory pathway. PMID:11260794

The role of the posed smile in overall facial esthetics.

PubMed

Havens, David C; McNamara, James A; Sigler, Lauren M; Baccetti, Tiziano

2010-03-01

To evaluate the role of the posed smile in overall facial esthetics, as determined by laypersons and orthodontists. Twenty orthodontists and 20 lay evaluators were asked to perform six Q-sorts on different photographs of 48 white female subjects. The six Q-sorts consisted of three different photographs for each of two time points (pre- and posttreatment), as follows: (1) smile-only, (2) face without the smile, and (3) face with the smile. The evaluators determined a split-line for attractive and unattractive images at the end of each Q-sort. The proportions of attractive patients were compared across Q-sorts using a Wilcoxon signed-rank test for paired data. The evaluators also ranked nine facial/dental characteristics at the completion of the six Q-sorts. Evaluators found the pretreatment face without the smile to be significantly more attractive than the face with the smile or the smile-only photographs. Dissimilar results were seen posttreatment; there was not a significant difference between the three posttreatment photographs. The two panels agreed on the proportion of "attractive" subjects but differed on the attractiveness level of each individual subject. The presence of a malocclusion has a negative impact on facial attractiveness. Orthodontic correction of a malocclusion affects overall facial esthetics positively. Laypeople and orthodontists agree on what is attractive. Overall facial harmony is the most important characteristic used in deciding facial attractiveness.

Vanadium Transitions in the Spectrum of Arcturus

NASA Astrophysics Data System (ADS)

Wood, M. P.; Sneden, C.; Lawler, J. E.; Den Hartog, E. A.; Cowan, J. J.; Nave, G.

2018-02-01

We derive a new abundance for vanadium in the bright, mildly metal-poor red giant Arcturus. This star has an excellent high-resolution spectral atlas and well-understood atmospheric parameters, and it displays a rich set of neutral vanadium lines that are available for abundance extraction. We employ a newly recorded set of laboratory FTS spectra to investigate any potential discrepancies in previously reported V I log(gf) values near 900 nm. These new spectra support our earlier laboratory transition data and the calibration method utilized in that study. We then perform a synthetic spectrum analysis of weak V I features in Arcturus, deriving log ε(V) = 3.54 ± 0.01 (σ = 0.04) from 55 lines. There are no significant abundance trends with wavelength, line strength, or lower excitation energy.

Comparison of optotypes of Amsterdam Picture Chart with those of Tumbling-E, LEA symbols, ETDRS, and Landolt-C in non-amblyopic and amblyopic patients.

PubMed

Engin, O; Despriet, D D G; van der Meulen-Schot, H M; Romers, A; Slot, X; Sang, M Tjon Fo; Fronius, M; Kelderman, H; Simonsz, H J

2014-12-01

To compare optotypes of the Amsterdam Picture Chart (APK) with those of Landolt-C (LC), Tumbling-E (TE), ETDRS and LEA symbols (LEA), to assess their reliability in measuring visual acuity (VA). We recruited healthy controls with equal VA and amblyopes with ≥2 LogMAR lines interocular difference. New logarithmic charts were developed with LC, TE, ETDRS, LEA, and APK with identical size and spacing (four optotypes) between optotypes. Charts were randomly presented at 5 m under DIN EN ISO 8596 and 8597 conditions. VA was measured with LC (LC-VA), TE, ETDRS, LEA, and APK, using six out of ten optotypes answered correctly as threshold. In 100 controls aged 17-31, LC-VA was -0.207 ± SD 0.089 LogMAR. Visual acuity measured with TE differed from LC-VA by 0.021 (positive value meaning less recognizable), with ETDRS 0.012, with Lea 0.054, and with APK 0.117. In 46 amblyopic eyes with LC-VA <0.5 LogMAR, the difference was for TE 0.017, for ETDRS 0.017, for LEA 0.089, and for APK 0.213. In 13 amblyopic eyes with LC-VA ≥0.5 LogMAR, the difference was for TE 0.122, ETDRS 0.047, LEA 0.057, and APK 0.019. APK optotypes had a lower percentage of passed subjects at each LogMAR line compared to Landolt-C. The 11 APK optotypes had different thresholds. Small APK optotypes were recognized worse than all other optotypes, probably because of their thinner lines. Large APK optotypes were recognized relatively well, possibly reflecting recognition acuity. Differences between the thresholds of the 11 APK optotypes reduced its sensitivity further.

Time-Lapse Measurement of Wellbore Integrity

NASA Astrophysics Data System (ADS)

Duguid, A.

2017-12-01

Well integrity is becoming more important as wells are used longer or repurposed. For CO2, shale gas, and other projects it has become apparent that wells represent the most likely unintended migration pathway for fluids out of the reservoir. Comprehensive logging programs have been employed to determine the condition of legacy wells in North America. These studies provide examples of assessment technologies. Logging programs have included pulsed neutron logging, ultrasonic well mapping, and cement bond logging. While these studies provide examples of what can be measured, they have only conducted a single round of logging and cannot show if the well has changed over time. Recent experience with time-lapse logging of three monitoring wells at a US Department of Energy sponsored CO2 project has shown the full value of similar tools. Time-lapse logging has shown that well integrity changes over time can be identified. It has also shown that the inclusion of and location of monitoring technologies in the well and the choice of construction materials must be carefully considered. Two of the wells were approximately eight years old at the time of study; they were constructed with steel and fiberglass casing sections and had lines on the outside of the casing running to the surface. The third well was 68 years old when it was studied and was originally constructed as a production well. Repeat logs were collected six or eight years after initial logging. Time-lapse logging showed the evolution of the wells. The results identified locations where cement degraded over time and locations that showed little change. The ultrasonic well maps show clearly that the lines used to connect the monitoring technology to the surface are visible and have a local effect on cement isolation. Testing and sampling was conducted along with logging. It provided insight into changes identified in the time-lapse log results. Point permeability testing was used to provide an in-situ point estimate of the cement isolating capacity. Cased-hole sidewall cores in the steel and fiberglass casing sections allowed analysis of bulk cement and the cement at the casing- and formation-interface. This presentation will cover how time-lapse logging was conducted, how the results may be applicable to other wells, and how monitoring well design may affect wellbore integrity.

Partisans without Constraint: Political Polarization and Trends in American Public Opinion1

PubMed Central

Baldassarri, Delia; Gelman, Andrew

2013-01-01

Public opinion polarization is here conceived as a process of alignment along multiple lines of potential disagreement and measured as growing constraint in individuals’ preferences. Using NES data from 1972 to 2004, the authors model trends in issue partisanship—the correlation of issue attitudes with party identification—and issue alignment—the correlation between pairs of issues—and find a substantive increase in issue partisanship, but little evidence of issue alignment. The findings suggest that opinion changes correspond more to a resorting of party labels among voters than to greater constraint on issue attitudes: since parties are more polarized, they are now better at sorting individuals along ideological lines. Levels of constraint vary across population subgroups: strong partisans and wealthier and politically sophisticated voters have grown more coherent in their beliefs. The authors discuss the consequences of partisan realignment and group sorting on the political process and potential deviations from the classic pluralistic account of American politics. PMID:24932012

Technical note: An improved approach to determining background aerosol concentrations with PILS sampling on aircraft

NASA Astrophysics Data System (ADS)

Fukami, Christine S.; Sullivan, Amy P.; Ryan Fulgham, S.; Murschell, Trey; Borch, Thomas; Smith, James N.; Farmer, Delphine K.

2016-07-01

Particle-into-Liquid Samplers (PILS) have become a standard aerosol collection technique, and are widely used in both ground and aircraft measurements in conjunction with off-line ion chromatography (IC) measurements. Accurate and precise background samples are essential to account for gas-phase components not efficiently removed and any interference in the instrument lines, collection vials or off-line analysis procedures. For aircraft sampling with PILS, backgrounds are typically taken with in-line filters to remove particles prior to sample collection once or twice per flight with more numerous backgrounds taken on the ground. Here, we use data collected during the Front Range Air Pollution and Photochemistry Éxperiment (FRAPPÉ) to demonstrate that not only are multiple background filter samples are essential to attain a representative background, but that the chemical background signals do not follow the Gaussian statistics typically assumed. Instead, the background signals for all chemical components analyzed from 137 background samples (taken from ∼78 total sampling hours over 18 flights) follow a log-normal distribution, meaning that the typical approaches of averaging background samples and/or assuming a Gaussian distribution cause an over-estimation of background samples - and thus an underestimation of sample concentrations. Our approach of deriving backgrounds from the peak of the log-normal distribution results in detection limits of 0.25, 0.32, 3.9, 0.17, 0.75 and 0.57 μg m-3 for sub-micron aerosol nitrate (NO3-), nitrite (NO2-), ammonium (NH4+), sulfate (SO42-), potassium (K+) and calcium (Ca2+), respectively. The difference in backgrounds calculated from assuming a Gaussian distribution versus a log-normal distribution were most extreme for NH4+, resulting in a background that was 1.58× that determined from fitting a log-normal distribution.

LEVELS OF EXTREMELY LOW-FREQUENCY ELECTRIC AND MAGNETIC FIELDS FROM OVERHEAD POWER LINES IN THE OUTDOOR ENVIRONMENT OF RAMALLAH CITY-PALESTINE.

PubMed

Abuasbi, Falastine; Lahham, Adnan; Abdel-Raziq, Issam Rashid

2018-05-01

In this study, levels of extremely low-frequency electric and magnetic fields originated from overhead power lines were investigated in the outdoor environment in Ramallah city, Palestine. Spot measurements were applied to record fields intensities over 6-min period. The Spectrum Analyzer NF-5035 was used to perform measurements at 1 m above ground level and directly underneath 40 randomly selected power lines distributed fairly within the city. Levels of electric fields varied depending on the line's category (power line, transformer or distributor), a minimum mean electric field of 3.9 V/m was found under a distributor line, and a maximum of 769.4 V/m under a high-voltage power line (66 kV). However, results of electric fields showed a log-normal distribution with the geometric mean and the geometric standard deviation of 35.9 and 2.8 V/m, respectively. Magnetic fields measured at power lines, on contrast, were not log-normally distributed; the minimum and maximum mean magnetic fields under power lines were 0.89 and 3.5 μT, respectively. As a result, none of the measured fields exceeded the ICNIRP's guidelines recommended for general public exposures to extremely low-frequency fields.

Detection and isolation of rare cells by 2-step enrichment high-speed flow cytometry/cell sorting and single cell LEAP laser ablation

NASA Astrophysics Data System (ADS)

Zordan, M. D.; Leary, James F.

2011-02-01

The clonal isolation of rare cells, especially cancer and stem cells, in a population is important to the development of improved medical treatment. We have demonstrated that the Laser-Enabled Analysis and Processing (LEAP, Cyntellect Inc., San Diego, CA) instrument can be used to efficiently produce single cell clones by photoablative dilution. Additionally, we have also shown that cells present at low frequencies can be cloned by photoablative dilution after they are pre-enriched by flow cytometry based cell sorting. Circulating tumor cells were modeled by spiking isolated peripheral blood cells with cells from the lung carcinoma cell line A549. Flow cytometry based cell sorting was used to perform an enrichment sort of A549 cells directly into a 384 well plate. Photoablative dilution was performed with the LEAPTM instrument to remove any contaminating cells, and clonally isolate 1 side population cell per well. We were able to isolate and grow single clones of side population cells using this method at greater than 90% efficiency. We have developed a 2 step method that is able to perform the clonal isolation of rare cells based on a medically relevant functional phenotype.

Characterization of the Hydrocarbon Potential and Non-Potential Zones Using Wavelet-Based Fractal Analysis

NASA Astrophysics Data System (ADS)

Mukherjee, Bappa; Roy, P. N. S.

The identification of prospective and dry zone is of major importance from well log data. Truthfulness in the identification of potential zone is a very crucial issue in hydrocarbon exploration. In this line, the problem has received considerable attention and many conventional techniques have been proposed. The purpose of this study is to recognize the hydrocarbon and non-hydrocarbon bearing portion within a reservoir by using the non-conventional technique. The wavelet based fractal analysis (WBFA) has been applied on the wire-line log data in order to obtain the pre-defined hydrocarbon (HC) and non-hydrocarbon (NHC) zones by their self-affine signal nature is demonstrated in this paper. The feasibility of the proposed technique is tested with the help of most commonly used logs, like self-potential, gamma ray, resistivity and porosity log responses. These logs are obtained from the industry to make out several HC and NHC zones of all wells in the study region belonging to the upper Assam basin. The results obtained in this study for a particular log response, where in the case of HC bearing zones, it is found that they are mainly situated in a variety of sandstones lithology which leads to the higher Hurst exponent. Further, the NHC zones found to be analogous to lithology with higher shale content having lower Hurst exponent. The above proposed technique can overcome the chance of miss interpretation in conventional reservoir characterization.

Characterization of gas hydrate reservoirs by integration of core and log data in the Ulleung Basin, East Sea

USGS Publications Warehouse

Bahk, J.-J.; Kim, G.-Y.; Chun, J.-H.; Kim, J.-H.; Lee, J.Y.; Ryu, B.-J.; Lee, J.-H.; Son, B.-K.; Collett, Timothy S.

2013-01-01

Examinations of core and well-log data from the Second Ulleung Basin Gas Hydrate Drilling Expedition (UBGH2) drill sites suggest that Sites UBGH2-2_2 and UBGH2-6 have relatively good gas hydrate reservoir quality in terms of individual and total cumulative thicknesses of gas-hydrate-bearing sand (HYBS) beds. In both of the sites, core sediments are generally dominated by hemipelagic muds which are intercalated with turbidite sands. The turbidite sands are usually thin-to-medium bedded and mainly consist of well sorted coarse silt to fine sand. Anomalies in infrared core temperatures and porewater chlorinity data and pressure core measurements indicate that “gas hydrate occurrence zones” (GHOZ) are present about 68–155 mbsf at Site UBGH2-2_2 and 110–155 mbsf at Site UBGH2-6. In both the GHOZ, gas hydrates are preferentially associated with many of the turbidite sands as “pore-filling” type hydrates. The HYBS identified in the cores from Site UBGH2-6 are medium-to-thick bedded particularly in the lower part of the GHOZ and well coincident with significant high excursions in all of the resistivity, density, and velocity logs. Gas-hydrate saturations in the HYBS range from 12% to 79% with an average of 52% based on pore-water chlorinity. In contrast, the HYBS from Site UBGH2-2_2 are usually thin-bedded and show poor correlations with both of the resistivity and velocity logs owing to volume averaging effects of the logging tools on the thin HYBS beds. Gas-hydrate saturations in the HYBS range from 15% to 65% with an average of 37% based on pore-water chlorinity. In both of the sites, large fluctuations in biogenic opal contents have significant effects on the sediment physical properties, resulting in limited usage of gamma ray and density logs in discriminating sand reservoirs.

SU-E-T-473: A Patient-Specific QC Paradigm Based On Trajectory Log Files and DICOM Plan Files

DOE Office of Scientific and Technical Information (OSTI.GOV)

DeMarco, J; McCloskey, S; Low, D

Purpose: To evaluate a remote QC tool for monitoring treatment machine parameters and treatment workflow. Methods: The Varian TrueBeamTM linear accelerator is a digital machine that records machine axis parameters and MLC leaf positions as a function of delivered monitor unit or control point. This information is saved to a binary trajectory log file for every treatment or imaging field in the patient treatment session. A MATLAB analysis routine was developed to parse the trajectory log files for a given patient, compare the expected versus actual machine and MLC positions as well as perform a cross-comparison with the DICOM-RT planmore » file exported from the treatment planning system. The parsing routine sorts the trajectory log files based on the time and date stamp and generates a sequential report file listing treatment parameters and provides a match relative to the DICOM-RT plan file. Results: The trajectory log parsing-routine was compared against a standard record and verify listing for patients undergoing initial IMRT dosimetry verification and weekly and final chart QC. The complete treatment course was independently verified for 10 patients of varying treatment site and a total of 1267 treatment fields were evaluated including pre-treatment imaging fields where applicable. In the context of IMRT plan verification, eight prostate SBRT plans with 4-arcs per plan were evaluated based on expected versus actual machine axis parameters. The average value for the maximum RMS MLC error was 0.067±0.001mm and 0.066±0.002mm for leaf bank A and B respectively. Conclusion: A real-time QC analysis program was tested using trajectory log files and DICOM-RT plan files. The parsing routine is efficient and able to evaluate all relevant machine axis parameters during a patient treatment course including MLC leaf positions and table positions at time of image acquisition and during treatment.« less

Scan line graphics generation on the massively parallel processor

NASA Technical Reports Server (NTRS)

Dorband, John E.

1988-01-01

Described here is how researchers implemented a scan line graphics generation algorithm on the Massively Parallel Processor (MPP). Pixels are computed in parallel and their results are applied to the Z buffer in large groups. To perform pixel value calculations, facilitate load balancing across the processors and apply the results to the Z buffer efficiently in parallel requires special virtual routing (sort computation) techniques developed by the author especially for use on single-instruction multiple-data (SIMD) architectures.

Enhanced heterologous expression of biologically active human granulocyte colony stimulating factor in transgenic tobacco BY-2 cells by localization to endoplasmic reticulum.

PubMed

Nair, Nisha R; Chidambareswaren, M; Manjula, S

2014-09-01

Tobacco Bright Yellow-2 (BY-2) cells, one of the best characterized cell lines is an attractive expression system for heterologous protein expression. However, the expression of foreign proteins is currently hampered by their low yield, which is partially the result of proteolytic degradation. Human granulocyte colony stimulating factor (hG-CSF) is a hematopoietic cytokine. Recombinant hG-CSF is successfully being used for the treatment of chemotherapy-induced neutropenia in cancer patients. Here, we describe a simple strategy for producing biologically active hG-CSF in tobacco BY-2 cells, localized in the apoplast of BY-2 cells, as well as targeted to the endoplasmic reticulum (ER). ER targeting significantly enhanced recombinant production which scaled to 17.89 mg/l from 4.19 mg/l when expressed in the apoplasts. Southern blotting confirmed the stable integration of hG-CSF in the BY-2 nuclear genome, and the expression of hG-CSF was analysed by Western blotting. Total soluble protein containing hG-CSF isolated from positive calli showed proliferative potential when tested on HL-60 cell lines by MTT assay. We also report the potential of a Fluorescence-activated cell sorting approach for an efficient sorting of the hG-CSF-expressing cell lines, which will enable the generation of homogenous high-producing cell lines.

Log sampling methods and software for stand and landscape analyses.

Treesearch

Lisa J. Bate; Torolf R. Torgersen; Michael J. Wisdom; Edward O. Garton; Shawn C. Clabough

2008-01-01

We describe methods for efficient, accurate sampling of logs at landscape and stand scales to estimate density, total length, cover, volume, and weight. Our methods focus on optimizing the sampling effort by choosing an appropriate sampling method and transect length for specific forest conditions and objectives. Sampling methods include the line-intersect method and...

Hardwood supply chain and the role of log brokers in 2012

Treesearch

Iris Montague; Adrienn Andersch; Jan Wiedenbeck; Urs Buehlmann

2013-01-01

The recent economic crisis has greatly affected how companies conduct business. To be competitive, companies had to make changes to their product lines, distribution channels, marketing, and overall business strategies. This study was conducted to describe and analyze the log supply component of the hardwood forest products distribution chain and to investigate changes...

What's new in well logging and formation evaluation

USGS Publications Warehouse

Prensky, S.

2011-01-01

A number of significant new developments is emerging in well logging and formation evaluation. Some of the new developments include an ultrasonic wireline imager, an electromagnetic free-point indicator, wired and fiber-optic coiled tubing systems, and extreme-temperature logging-while-drilling (LWD) tools. The continued consolidation of logging and petrophysical service providers in 2010 means that these innovations are increasingly being provided by a few large companies. Weatherford International has launched a slimhole cross-dipole tool as part of the company's line of compact logging tools. The 26-ft-long Compact Cross-Dipole Sonic (CXD) tool can be run as part of a quad-combo compact logging string. Halliburton has introduced a version of its circumferential acoustic scanning tool (CAST) that runs on monoconductor cable (CAST-M) to provide high-resolution images in open hole and in cased hole for casing and cement evaluation.

Application of accelerator sources for pulsed neutron logging of oil and gas wells

NASA Astrophysics Data System (ADS)

Randall, R. R.

1985-05-01

Dresser Atlas introduced the first commercial pulsed neutron oil well log in the early 1960s. This log had the capability of differentiating oil from salt water in a completed well. In the late 1970s the first continuous carbon/oxygen (C/O) log capable of differentiating oil from fresh water was introduced. The sources used in these commercial logs are radial geometry deuterium-tritium reaction devices with Cockcroft-Walton voltage multipliers providing the accelerator voltage. The commercial logging tools using these accelerators are comprised of scintillators detectors, power supplies, line drivers and receivers, and various timing and communications electronics. They are used to measure either the time decay or energy spectra of neutron-induced gamma events. The time decay information is useful in determining the neutron capture cross section, and the energy spectra is used to characterize inelastic neutron events.

A qualitative assessment of safe work practices in logging in the southern United States.

PubMed

Conway, Sadie H; Pompeii, Lisa A; Casanova, Vanessa; Douphrate, David I

2017-01-01

The logging industry is recognized as one of the most dangerous professions in the U.S., but little is known about safety management practices on remote logging sites. A total of six focus group sessions were held among logging supervisors and front line crew members in Arkansas, Louisiana, and Texas (N = 27 participants). Participants perceived that logging was a dangerous profession, but its risks had been mitigated in several ways, most notably through mechanization of timber harvesting. Log trucking-related incidents were widely identified as the primary source of risk for injury and death on logging work sites. Human error, in general, and being out of the machinery on the work site were highlighted as additional sources of risk. Participants indicated high levels of personal motivation to work in a safe manner but tended to underestimate workplace hazards and expressed widely varying levels of co-worker trust. Am. J. Ind. Med. 60:58-68, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

NPLOT: an Interactive Plotting Program for NASTRAN Finite Element Models

NASA Technical Reports Server (NTRS)

Jones, G. K.; Mcentire, K. J.

1985-01-01

The NPLOT (NASTRAN Plot) is an interactive computer graphics program for plotting undeformed and deformed NASTRAN finite element models. Developed at NASA's Goddard Space Flight Center, the program provides flexible element selection and grid point, ASET and SPC degree of freedom labelling. It is easy to use and provides a combination menu and command driven user interface. NPLOT also provides very fast hidden line and haloed line algorithms. The hidden line algorithm in NPLOT proved to be both very accurate and several times faster than other existing hidden line algorithms. A fast spatial bucket sort and horizon edge computation are used to achieve this high level of performance. The hidden line and the haloed line algorithms are the primary features that make NPLOT different from other plotting programs.

Genetic heterogeneity of RPMI-8402, a T-acute lymphoblastic leukemia cell line

PubMed Central

STOCZYNSKA-FIDELUS, EWELINA; PIASKOWSKI, SYLWESTER; PAWLOWSKA, ROZA; SZYBKA, MALGORZATA; PECIAK, JOANNA; HULAS-BIGOSZEWSKA, KRYSTYNA; WINIECKA-KLIMEK, MARTA; RIESKE, PIOTR

2016-01-01

Thorough examination of genetic heterogeneity of cell lines is uncommon. In order to address this issue, the present study analyzed the genetic heterogeneity of RPMI-8402, a T-acute lymphoblastic leukemia (T-ALL) cell line. For this purpose, traditional techniques such as fluorescence in situ hybridization and immunocytochemistry were used, in addition to more advanced techniques, including cell sorting, Sanger sequencing and massive parallel sequencing. The results indicated that the RPMI-8402 cell line consists of several genetically different cell subpopulations. Furthermore, massive parallel sequencing of RPMI-8402 provided insight into the evolution of T-ALL carcinogenesis, since this cell line exhibited the genetic heterogeneity typical of T-ALL. Therefore, the use of cell lines for drug testing in future studies may aid the progress of anticancer drug research. PMID:26870252

Error Reduction Methods for Integrated-path Differential-absorption Lidar Measurements

NASA Technical Reports Server (NTRS)

Chen, Jeffrey R.; Numata, Kenji; Wu, Stewart T.

2012-01-01

We report new modeling and error reduction methods for differential-absorption optical-depth (DAOD) measurements of atmospheric constituents using direct-detection integrated-path differential-absorption lidars. Errors from laser frequency noise are quantified in terms of the line center fluctuation and spectral line shape of the laser pulses, revealing relationships verified experimentally. A significant DAOD bias is removed by introducing a correction factor. Errors from surface height and reflectance variations can be reduced to tolerable levels by incorporating altimetry knowledge and "log after averaging", or by pointing the laser and receiver to a fixed surface spot during each wavelength cycle to shorten the time of "averaging before log".

Distance versus near visual acuity in amblyopia

PubMed Central

Christoff, Alex; Repka, Michael X.; Kaminski, Brett M.; Holmes, Jonathan M.; Ch, B

2011-01-01

Purpose There are conflicting reports about whether distance and near visual acuity are similar in eyes with amblyopia. The purpose of this study is to compare monocular distance visual acuity with near visual acuity in amblyopic eyes of children. Methods Subjects 2 to 6 years of age were evaluated in a randomized trial of amblyopia therapy for moderate amblyopia (20/40 to 20/80) due to anisometropia, strabismus, or both. Prior to initiating the protocol-prescribed therapy, subjects had best-corrected visual acuity measured with standardized protocols at 3 meters and 0.4 meters using single-surrounded HOTV optotypes. Results A total of 129 subjects were included. The mean amblyopic eye visual acuity was similar at distance and near (mean, 0.45 logMAR at distance versus 0.45 logMAR at near; mean difference, +0.00, 95% CI, −0.03 to 0.03). Of the 129 subjects, 86 (67%) tested within one line at distance and near, 19 (15%) tested more than one logMAR line better at distance, and 24 (19%) tested more than one logMAR line better at near. The mean visual acuity difference between distance and near did not differ by cause of amblyopia, age, or spherical equivalent refractive error. Conclusions We found no systematic difference between distance and near visual acuity in 2- to 6-year-old children with moderate amblyopia associated with strabismus and/or anisometropia. Individual differences between distance and near visual acuity are likely due to test–retest variability. PMID:21907115

A TWO-PHASE LOW-VELOCITY OUTFLOW IN THE SEYFERT 1 GALAXY Ark 564

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gupta, A.; Mathur, S.; Krongold, Y.

2013-05-10

The Seyfert 1 galaxy Ark 564 was observed with Chandra high-energy transmission gratings for 250 ks. We present the high-resolution X-ray spectrum that shows several associated absorption lines. The photoionization model requires two warm absorbers (WAs) with two different ionization states (log U = 0.39 {+-} 0.03 and log U = -0.99 {+-} 0.13), both with moderate outflow velocities ({approx}100 km s{sup -1}) and relatively low line of sight column densities (log N{sub H} = 20.94 and 20.11 cm{sup -2}). The high-ionization phase produces absorption lines of O VII, O VIII, Ne IX, Ne X, Mg XI, Fe XVII, andmore » Fe XVIII, while the low-ionization phase produces lines at lower energies (O VIand O VII). The pressure-temperature equilibrium curve for the Ark 564 absorber does not have the typical ''S'' shape, even if the metallicity is super-solar; as a result, the two WA phases do not appear to be in pressure balance. This suggests that the continuum incident on the absorbing gas is perhaps different from the observed continuum. We also estimated the mass outflow rate and the associated kinetic energy and find it to be at most 0.009% of the bolometric luminosity of Ark 564. Thus, it is highly unlikely that these outflows provide significant feedback required by the galaxy formation models.« less

Myosin Ib modulates the morphology and the protein transport within multi-vesicular sorting endosomes.

PubMed

Salas-Cortes, Laura; Ye, Fei; Tenza, Danièle; Wilhelm, Claire; Theos, Alexander; Louvard, Daniel; Raposo, Graça; Coudrier, Evelyne

2005-10-15

Members of at least four classes of myosin (I, II, V and VI) have been implicated in the dynamics of a large variety of organelles. Despite their common motor domain structure, some of these myosins, however, are non processive and cannot move organelles along the actin tracks. Here, we demonstrate in the human pigmented MNT-1 cell line that, (1) the overexpression of one of these myosins, myosin 1b, or the addition of cytochalasin D affects the morphology of the sorting multivesicular endosomes; (2) the overexpression of myosin 1b delays the processing of Pmel17 (the product of murine silver locus also named GP100), which occurs in these multivesicular endosomes; (3) myosin 1b associated with endosomes coimmunoprecipitates with Pmel17. All together, these observations suggest that myosin 1b controls the traffic of protein cargo in multivesicular endosomes most probably through its ability to modulate with actin the morphology of these sorting endosomes.

Binary-space-partitioned images for resolving image-based visibility.

PubMed

Fu, Chi-Wing; Wong, Tien-Tsin; Tong, Wai-Shun; Tang, Chi-Keung; Hanson, Andrew J

2004-01-01

We propose a novel 2D representation for 3D visibility sorting, the Binary-Space-Partitioned Image (BSPI), to accelerate real-time image-based rendering. BSPI is an efficient 2D realization of a 3D BSP tree, which is commonly used in computer graphics for time-critical visibility sorting. Since the overall structure of a BSP tree is encoded in a BSPI, traversing a BSPI is comparable to traversing the corresponding BSP tree. BSPI performs visibility sorting efficiently and accurately in the 2D image space by warping the reference image triangle-by-triangle instead of pixel-by-pixel. Multiple BSPIs can be combined to solve "disocclusion," when an occluded portion of the scene becomes visible at a novel viewpoint. Our method is highly automatic, including a tensor voting preprocessing step that generates candidate image partition lines for BSPIs, filters the noisy input data by rejecting outliers, and interpolates missing information. Our system has been applied to a variety of real data, including stereo, motion, and range images.

Fundamentals of Acoustic Measurements on Trees and Logs and Their Implication to Field Application

Treesearch

Xiping Wang

2011-01-01

Acoustic technologies have been well established as material evaluation tools in the past several decades, and their use has become widely accepted in the forest products industry for on-line quality control and products grading. Recent research developments on acoustic sensing technology offer further opportunities to evaluate standing trees and logs for general wood...

A first look at logging residue characteristics in West Virginia

Treesearch

A. Jeff Martin

1975-01-01

In 1973 and 1974, the Forest Products Marketing Laboratory obtained some preliminary information about characteristics of logging residues in West Virginia. Sixteen 1-acre plots were measured in conjunction with a test of the line-intersect sampling method. Findings from the 16 plots showed that hardwood residue volumes ranged from 100 to 1,300 cubic feet per acre,...

Prediction of Pork Longissimus Lean Color Stability Using VIS/NIR

USDA-ARS?s Scientific Manuscript database

Insufficient case-life is a costly problem facing pork processors. To assess Visible and Near-Infrared (VIS/NIR) spectroscopy as a technology to sort pork loins according to lean color stability, center-cut pork loins (n = 1208) were selected from the boning lines of four large-scale pork processor...

The Role of IQGAP1 in Breast Carcinoma

DTIC Science & Technology

2011-10-01

study! of! the! pathogenesis! of! breast! cancer.! These! include! analysis ! of! intracellular! signaling!by!Western!blotting,! determination!of! cell...proliferation!by! sulforhodamine!B! staining,! fluorescence: activated!cell!sorting!(FACS)! analysis ,!stable!cell!line!generation,!production!of!and...transduction!using!retroviral! and!lentiviral!supernatants,! immunocytochemistry!and!confocal! laser!microscopy,! immunohistochemistry,!and! analysis

Precision measurements from very-large scale aerial digital imagery.

PubMed

Booth, D Terrance; Cox, Samuel E; Berryman, Robert D

2006-01-01

Managers need measurements and resource managers need the length/width of a variety of items including that of animals, logs, streams, plant canopies, man-made objects, riparian habitat, vegetation patches and other things important in resource monitoring and land inspection. These types of measurements can now be easily and accurately obtained from very large scale aerial (VLSA) imagery having spatial resolutions as fine as 1 millimeter per pixel by using the three new software programs described here. VLSA images have small fields of view and are used for intermittent sampling across extensive landscapes. Pixel-coverage among images is influenced by small changes in airplane altitude above ground level (AGL) and orientation relative to the ground, as well as by changes in topography. These factors affect the object-to-camera distance used for image-resolution calculations. 'ImageMeasurement' offers a user-friendly interface for accounting for pixel-coverage variation among images by utilizing a database. 'LaserLOG' records and displays airplane altitude AGL measured from a high frequency laser rangefinder, and displays the vertical velocity. 'Merge' sorts through large amounts of data generated by LaserLOG and matches precise airplane altitudes with camera trigger times for input to the ImageMeasurement database. We discuss application of these tools, including error estimates. We found measurements from aerial images (collection resolution: 5-26 mm/pixel as projected on the ground) using ImageMeasurement, LaserLOG, and Merge, were accurate to centimeters with an error less than 10%. We recommend these software packages as a means for expanding the utility of aerial image data.

Abundance analysis of neodymium in the solar atmosphere

NASA Astrophysics Data System (ADS)

Abdelkawy, Ali G. A.; Shaltout, Abdelrazek M. K.; Beheary, M. M.; Bakry, A.

2017-10-01

Based on non-local thermodynamical equilibrium (NLTE) calculations, the solar neodymium (Nd) content was found based on a model atom of singly ionized neodymium (Nd II) containing 153 energy levels and 42 line transitions plus the ground state of Nd III. Here, we re-derive the solar Nd abundance using the model of the solar photosphere of Holweger & Müller.We succeed in selecting a good sample line list, relying on 20 Nd II solar lines together with the most accurate transition probabilities measured experimentally and available observational data. With damping parameters obtained from the literature, we find a mean NLTE solar photospheric Nd abundance of log ɛNd(1D) = 1.43 ± 0.16, which is in excellent agreement with the meteoritic value (log ɛNd = 1.45 ± 0.02). For a set of selected Nd II lines, the NLTE abundance correction is found to be +0.01 dex compared with the standard LTE effect. The influence of collisional interactions with electrons and neutral hydrogen atoms is investigated in detail.

Design and Development of a High Speed Sorting System Based on Machine Vision Guiding

NASA Astrophysics Data System (ADS)

Zhang, Wenchang; Mei, Jiangping; Ding, Yabin

In this paper, a vision-based control strategy to perform high speed pick-and-place tasks on automation product line is proposed, and relevant control software is develop. Using Delta robot to control a sucker to grasp disordered objects from one moving conveyer and then place them on the other in order. CCD camera gets one picture every time the conveyer moves a distance of ds. Objects position and shape are got after image processing. Target tracking method based on "Servo motor + synchronous conveyer" is used to fulfill the high speed porting operation real time. Experiments conducted on Delta robot sorting system demonstrate the efficiency and validity of the proposed vision-control strategy.

Fast and automatic thermographic material identification for the recycling process

NASA Astrophysics Data System (ADS)

Haferkamp, Heinz; Burmester, Ingo

1998-03-01

Within the framework of the future closed loop recycling process the automatic and economical sorting of plastics is a decisive element. The at the present time available identification and sorting systems are not yet suitable for the sorting of technical plastics since essential demands, as the realization of high recognition reliability and identification rates considering the variety of technical plastics, can not be guaranteed. Therefore the Laser Zentrum Hannover e.V. in cooperation with the Hoerotron GmbH and the Preussag Noell GmbH has carried out investigations on a rapid thermographic and laser-supported material- identification-system for automatic material-sorting- systems. The automatic identification of different engineering plastics coming from electronic or automotive waste is possible. Identification rates up to 10 parts per second are allowed by the effort from fast IR line scanners. The procedure is based on the following principle: within a few milliseconds a spot on the relevant sample is heated by a CO2 laser. The samples different and specific chemical and physical material properties cause different temperature distributions on their surfaces that are measured by a fast IR-linescan system. This 'thermal impulse response' has to be analyzed by means of a computer system. Investigations have shown that it is possible to analyze more than 18 different sorts of plastics at a frequency of 10 Hz. Crucial for the development of such a system is the rapid processing of imaging data, the minimization of interferences caused by oscillating samples geometries, and a wide range of possible additives in plastics in question. One possible application area is sorting of plastics coming from car- and electronic waste recycling.

The MOSDEF Survey: Dissecting the Star Formation Rate versus Stellar Mass Relation Using Hα and Hβ Emission Lines at z ∼ 2

NASA Astrophysics Data System (ADS)

Shivaei, Irene; Reddy, Naveen A.; Shapley, Alice E.; Kriek, Mariska; Siana, Brian; Mobasher, Bahram; Coil, Alison L.; Freeman, William R.; Sanders, Ryan; Price, Sedona H.; de Groot, Laura; Azadi, Mojegan

2015-12-01

We present results on the star formation rate (SFR) versus stellar mass (M*) relation (i.e., the “main sequence”) among star-forming galaxies at 1.37 ≤ z ≤ 2.61 using the MOSFIRE Deep Evolution Field (MOSDEF) survey. Based on a sample of 261 galaxies with Hα and Hβ spectroscopy, we have estimated robust dust-corrected instantaneous SFRs over a large range in M* (˜109.5-1011.5 M⊙). We find a correlation between log(SFR(Hα)) and log(M*) with a slope of 0.65 ± 0.08 (0.58 ± 0.10) at 1.4 < z < 2.6 (2.1 < z < 2.6). We find that different assumptions for the dust correction, such as using the color excess of the stellar continuum to correct the nebular lines, sample selection biases against red star-forming galaxies, and not accounting for Balmer absorption, can yield steeper slopes of the log(SFR)-log(M*) relation. Our sample is immune from these biases as it is rest-frame optically selected, Hα and Hβ are corrected for Balmer absorption, and the Hα luminosity is dust corrected using the nebular color excess computed from the Balmer decrement. The scatter of the log(SFR(Hα))-log(M*) relation, after accounting for the measurement uncertainties, is 0.31 dex at 2.1 < z < 2.6, which is 0.05 dex larger than the scatter in log(SFR(UV))-log(M*). Based on comparisons to a simulated SFR-M* relation with some intrinsic scatter, we argue that in the absence of direct measurements of galaxy-to-galaxy variations in the attenuation/extinction curves and the initial mass function, one cannot use the difference in the scatter of the SFR(Hα)- and SFR(UV)-M* relations to constrain the stochasticity of star formation in high-redshift galaxies.

Sorting of Pmel17 to melanosomes through the plasma membrane by AP1 and AP2: evidence for the polarized nature of melanocytes

PubMed Central

Valencia, Julio C.; Watabe, Hidenori; Chi, An; Rouzaud, Francois; Chen, Kevin G.; Vieira, Wilfred D.; Takahashi, Kaoruko; Yamaguchi, Yuji; Berens, Werner; Nagashima, Kunio; Shabanowitz, Jeffrey; Hunt, Donald F.; Appella, Ettore; Hearing, Vincent J.

2015-01-01

Summary Adaptor proteins (AP) play important roles in the sorting of proteins from the trans-Golgi network, but how they function in the sorting of various melanosome-specific proteins such as Pmel17, an essential structural component of melanosomes, in melanocytes is unknown. We characterized the processing and trafficking of Pmel17 via adaptor protein complexes within melanocytic cells. Proteomics analysis detected Pmel17, AP1 and AP2, but not AP3 or AP4 in early melanosomes. Real-time PCR, immunolabeling and tissue in-situ hybridization confirmed the coexpression of AP1 isoforms μ1A and μ1B (expressed only in polarized cells) in melanocytes and keratinocytes, but expression of μ1B is missing in some melanoma cell lines. Transfection with AP1 isoforms (μ1A or μ1B) showed two distinct distribution patterns that involved Pmel17, and only μ1B was able to restore the sorting of Pmel17 to the plasma membrane in cells lacking μ1B expression. Finally, we established that expression of μ1B is regulated physiologically in melanocytes by UV radiation or DKK1. These results show that Pmel17 is sorted to melanosomes by various intracellular routes, directly or indirectly through the plasma membrane, and the presence of basolateral elements in melanocytes suggests their polarized nature. PMID:16492709

Real-time implementation of a color sorting system

NASA Astrophysics Data System (ADS)

Srikanteswara, Srikathyanyani; Lu, Qiang O.; King, William; Drayer, Thomas H.; Conners, Richard W.; Kline, D. Earl; Araman, Philip A.

1997-09-01

Wood edge glued panels are used extensively in the furniture and cabinetry industries. They are used to make doors, tops, and sides of solid wood furniture and cabinets. Since lightly stained furniture and cabinets are gaining in popularity, there is an increasing demand to color sort the parts used to make these edge glued panels. The goal of the sorting processing is to create panels that are uniform in both color and intensity across their visible surface. If performed manually, the color sorting of edge-glued panel parts is very labor intensive and prone to error. This paper describes a complete machine vision system for performing this sort. This system uses two color line scan cameras for image input and a specially designed custom computing machine to allow real-time implementation. Users define the number of color classes that are to be used. An 'out' class is provided to handle unusually colored parts. The system removes areas of character mark, e.g., knots, mineral streak, etc., from consideration when assigning a color class to a part. The system also includes a better face algorithm for determining which part face would be the better to put on the side of the panel that will show. The throughput is two linear feet per second. Only a four inch between part spacing is required. This system has undergone extensive in plant testing and will be commercially available in the very near future. The results of this testing will be presented.

GPU based contouring method on grid DEM data

NASA Astrophysics Data System (ADS)

Tan, Liheng; Wan, Gang; Li, Feng; Chen, Xiaohui; Du, Wenlong

2017-08-01

This paper presents a novel method to generate contour lines from grid DEM data based on the programmable GPU pipeline. The previous contouring approaches often use CPU to construct a finite element mesh from the raw DEM data, and then extract contour segments from the elements. They also need a tracing or sorting strategy to generate the final continuous contours. These approaches can be heavily CPU-costing and time-consuming. Meanwhile the generated contours would be unsmooth if the raw data is sparsely distributed. Unlike the CPU approaches, we employ the GPU's vertex shader to generate a triangular mesh with arbitrary user-defined density, in which the height of each vertex is calculated through a third-order Cardinal spline function. Then in the same frame, segments are extracted from the triangles by the geometry shader, and translated to the CPU-side with an internal order in the GPU's transform feedback stage. Finally we propose a "Grid Sorting" algorithm to achieve the continuous contour lines by travelling the segments only once. Our method makes use of multiple stages of GPU pipeline for computation, which can generate smooth contour lines, and is significantly faster than the previous CPU approaches. The algorithm can be easily implemented with OpenGL 3.3 API or higher on consumer-level PCs.

Rab1a regulates sorting of early endocytic vesicles

PubMed Central

Mukhopadhyay, Aparna; Quiroz, Jose A.

2014-01-01

We previously reported that Rab1a is associated with asialoorosomucoid (ASOR)-containing early endocytic vesicles, where it is required for their microtubule-based motility. In Rab1a knockdown (KD) cell lines, ASOR failed to segregate from its receptor and, consequently, did not reach lysosomes for degradation, indicating a defect in early endosome sorting. Although Rab1 is required for Golgi/endoplasmic reticulum trafficking, this process was unaffected, likely due to retained expression of Rab1b in these cells. The present study shows that Rab1a has a more general role in endocytic vesicle processing that extends to EGF and transferrin (Tfn) trafficking. Compared with results in control Huh7 cells, EGF accumulated in aggregates within Rab1a KD cells, failing to reach lysosomal compartments. Tfn, a prototypical example of recycling cargo, accumulated in a Rab11-mediated slow-recycling compartment in Rab1a KD cells, in contrast to control cells, which sort Tfn into a fast-recycling Rab4 compartment. These data indicate that Rab1a is an important regulator of early endosome sorting for multiple cargo species. The effectors and accessory proteins recruited by Rab1a to early endocytic vesicles include the minus-end-directed kinesin motor KifC1, while others remain to be discovered. PMID:24407591

Abundance Analysis of the Helium Weak Star 20-TAURI

NASA Astrophysics Data System (ADS)

Mon, M.; Hirata, R.; Sadakane, K.

An abundance analysis of the helium-weak star 20 Tauri is performed with a fully line-blanketed model atmosphere. The adopted atmospheric parameters are Teff =12600 K and log g=3.2. These values are lower by about 1000 K in Teff and 0.3 in log g than those used in previous investigations, and 20 Tau is the coolest star among the group of helium-weak star. A value of log N(He)/N(H)=-1.7 is found from the average of six He I lines. Mg, Si, Ca, and Ni are underabundant, while P and Mn are overabundant. The abundances of C, Ti, Cr, and Fe coincide with the solar values within ±0.3 dex. Upper limits of the abundances of S, Sc, and Sr are estimated and these elements are not overabundant. The observed abundance pattern in 20 Tau is quite different from those in other helium-weak stars, while it shows a mild characteristic of Mn-Hg stars.

Composite Spectra of Broad Absorption Line Quasars in SDSS-III BOSS

NASA Astrophysics Data System (ADS)

Herbst, Hanna; Hamann, Fred; Paris, Isabelle; Capellupo, Daniel M.

2017-01-01

We present preliminary results from a study of broad absorption line (BAL) quasars in the SDSS-III BOSS survey. We’re particularly interested in BALs because they arise from quasar outflows, which may be a source of feedback to the host galaxy. We analyze median composite spectra for BOSS QSOs in the redshift range 2.1 to 3.4 sorted by the strength of the BAL absorption troughs, parameterized by the Balnicity Index (BI), to study trends in the emission and absorption properties of BAL quasars. The wavelength coverage and high number of quasars observed in the BOSS survey allow us to examine BALs in the Lyman forest. Our main preliminary results when sorting the quasars by BI are 1) doublet absorption lines such as P V 1128A show a 1:1 ratio across all BI, indicating large column densities at all BI. This suggests that weaker BAL troughs result from smaller covering fractions rather than lower column densities. 2) The He II emission line, which is a measure of the far-UV/near-UV hardness of the ionizing continuum, is weaker in the larger BI composite spectra, indicating a far-UV spectral softening correlated with BI. This is consistent with the radiatively-driven BAL outflows being helped by intrinsically weaker ionizing continuum shapes (e.g., Baskin, Laor, and Hamann 2013). We also find a trend for slightly redder continuum slopes in the larger BI composite spectra, suggesting that the slope differences in the near-UV are also intrinsic.

Polar exponential sensor arrays unify iconic and Hough space representation

NASA Technical Reports Server (NTRS)

Weiman, Carl F. R.

1990-01-01

The log-polar coordinate system, inherent in both polar exponential sensor arrays and log-polar remapped video imagery, is identical to the coordinate system of its corresponding Hough transform parameter space. The resulting unification of iconic and Hough domains simplifies computation for line recognition and eliminates the slope quantization problems inherent in the classical Cartesian Hough transform. The geometric organization of the algorithm is more amenable to massively parallel architectures than that of the Cartesian version. The neural architecture of the human visual cortex meets the geometric requirements to execute 'in-place' log-Hough algorithms of the kind described here.

Convective Mixing in Distal Pipes Exacerbates Legionella pneumophila Growth in Hot Water Plumbing.

PubMed

Rhoads, William J; Pruden, Amy; Edwards, Marc A

2016-03-12

Legionella pneumophila is known to proliferate in hot water plumbing systems, but little is known about the specific physicochemical factors that contribute to its regrowth. Here, L. pneumophila trends were examined in controlled, replicated pilot-scale hot water systems with continuous recirculation lines subject to two water heater settings (40 °C and 58 °C) and three distal tap water use frequencies (high, medium, and low) with two pipe configurations (oriented upward to promote convective mixing with the recirculating line and downward to prevent it). Water heater temperature setting determined where L. pneumophila regrowth occurred in each system, with an increase of up to 4.4 log gene copies/mL in the 40 °C system tank and recirculating line relative to influent water compared to only 2.5 log gene copies/mL regrowth in the 58 °C system. Distal pipes without convective mixing cooled to room temperature (23-24 °C) during periods of no water use, but pipes with convective mixing equilibrated to 30.5 °C in the 40 °C system and 38.8 °C in the 58 °C system. Corresponding with known temperature effects on L. pneumophila growth and enhanced delivery of nutrients, distal pipes with convective mixing had on average 0.2 log more gene copies/mL in the 40 °C system and 0.8 log more gene copies/mL in the 58 °C system. Importantly, this work demonstrated the potential for thermal control strategies to be undermined by distal taps in general, and convective mixing in particular.

Comparison of hospital room surface disinfection using a novel ultraviolet germicidal irradiation (UVGI) generator.

PubMed

Jelden, Katelyn C; Gibbs, Shawn G; Smith, Philip W; Hewlett, Angela L; Iwen, Peter C; Schmid, Kendra K; Lowe, John J

2016-09-01

The estimated 721,800 hospital acquired infections per year in the United States have necessitated development of novel environmental decontamination technologies such as ultraviolet germicidal irradiation (UVGI). This study evaluated the efficacy of a novel, portable UVGI generator (the TORCH, ChlorDiSys Solutions, Inc., Lebanon, NJ) to disinfect surface coupons composed of plastic from a bedrail, stainless steel, chrome-plated light switch cover, and a porcelain tile that were inoculated with methicillin-resistant Staphylococcus aureus (MRSA) or vancomycin-resistant Enterococcus faecalis (VRE). Each surface type was placed at 6 different sites within a hospital room and treated by 10-min ultraviolet-C (UVC) exposures using the TORCH with doses ranging from 0-688 mJ/cm(2) between sites. Organism reductions were compared with untreated surface coupons as controls. Overall, UVGI significantly reduced MRSA by an average of 4.6 log10 (GSD: 1.7 log10, 77% inactivation, p < 0.0001) and VRE by an average of 3.9 log10 (GSD: 1.7 log10, 65% inactivation, p < 0.0001). MRSA on bedrail was reduced significantly (p < 0.0001) less than on other surfaces, while VRE was reduced significantly less on chrome (p = 0.0004) and stainless steel (p = 0.0012) than porcelain tile. Organisms out of direct line of sight of the UVC generator were reduced significantly less (p < 0.0001) than those directly in line of sight. UVGI was found an effective method to inactivate nosocomial pathogens on surfaces evaluated within the hospital environment in direct line of sight of UVGI treatment with variation between organism and surface types.

Standard weight (Ws) equations for four rare desert fishes

USGS Publications Warehouse

Didenko, A.V.; Bonar, Scott A.; Matter, W.J.

2004-01-01

Standard weight (Ws) equations have been used extensively to examine body condition in sport fishes. However, development of these equations for nongame fishes has only recently been emphasized. We used the regression-line-percentile technique to develop standard weight equations for four rare desert fishes: flannelmouth sucker Catostomus latipinnis, razorback sucker Xyrauchen texanus, roundtail chub Gila robusta, and humpback chub G. cypha. The Ws equation for flannelmouth suckers of 100-690 mm total length (TL) was developed from 17 populations: log10Ws = -5.180 + 3.068 log10TL. The Ws equation for razorback suckers of 110-885 mm TL was developed from 12 populations: log 10Ws = -4.886 + 2.985 log10TL. The W s equation for roundtail chub of 100-525 mm TL was developed from 20 populations: log10Ws = -5.065 + 3.015 log10TL. The Ws equation for humpback chub of 120-495 mm TL was developed from 9 populations: log10Ws = -5.278 + 3.096 log 10TL. These equations meet criteria for acceptable standard weight indexes and can be used to calculate relative weight, an index of body condition.

Fuzzy Math: A Meditation on Test Scoring

ERIC Educational Resources Information Center

Jacks, Meredith

2011-01-01

As a public school English teacher, the author observes standardized testing season each year with a sort of grim fascination. "So this is it," she thinks as she paces around her silent classroom, peering over kids' shoulders at articles about parasailing. Line graphs tracking the rainfall in Tulsa. Parts of speech. Functions of "x." "These are…

log gf values for astrophysically important transitions Fe II

NASA Astrophysics Data System (ADS)

Deb, N. C.; Hibbert, A.

2014-01-01

Aims: In a recent measurement, Meléndez & Barbuy (2009, A&A, 497, 611) report accurate log gf values for 142 important astrophysical lines with wavelengths in the range 4000 Å to 8000 Å. Their results include both solar and laboratory measurements. In this paper, we describe a theoretical study of these lines. Methods: The CIV3 structure codes, combined with our "fine-tuning" extrapolation process, are used to undertake a large-scale CI calculation involving the lowest 262 fine-structure levels belonging to the 3d64s, 3d7, 3d54s2, 3d64p, and 3d54s4p configurations. Results: We find that many of the 142 transitions are very weak intercombination lines. Other transitions are weak because the dominant configurations in the two levels differ by two orbitals. Conclusions: The comparison between our log gf values and the experimental values generally shows good agreement for most of these transitions, with our theoretical values agreeing slightly more closely with the solar than with the laboratory measurements. A detailed analysis of the small number of transitions for which the agreement between theory and experiment is not as good shows that such disagreements largely arise from severe cancellation due to CI mixing.

Probing the galactic disk and halo. 2: Hot interstellar gas toward the inner galaxy star HD 156359

NASA Technical Reports Server (NTRS)

Sembach, Kenneth R.; Savage, Blair D.; Lu, Limin

1995-01-01

We present Goddard High Resolution Spectrograph intermediate-resolution measurements of the 1233-1256 A spectral region of HD 156396, a halo star at l = 328.7 deg, b = -14.5 deg in the inner Galaxy with a line-of sight distance of 11.1 kpc and a z-distance of -2.8 kpc. The data have a resolution of 18 km/s Full Width at Half Maximum (FWHM) and a signal-to-noise ratio of approximately 50:1. We detect interstellar lines of Mg II, S II, S II, Ge II, and N V and determine log N/(Mg II) = 15.78 +0.25, -0.27, log N(Si II) greater than 13.70, log N(S II) greater than 15.76, log N(Ge II) = 12.20 +0.09,-0.11, and log N(N v) = 14.06 +/- 0.02. Assuming solar reference abundances, the diffuse clouds containing Mg, S, and Ge along the sight line have average logarithmic depletions D(Mg) = -0.6 +/- 0.3 dex, D(S) greater than -0.2 dex, and D(Ge) = -0.2 +/- 0.2 dex. The Mg and Ge depletions are approximately 2 times smaller than is typical of diffuse clouds in the solar vicinity. Galactic rotational modeling of the N v profiles indicates that the highly ionized gas traced by this ion has a scale height of approximately 1 kpc if gas at large z-distances corotates with the underlying disk gas. Rotational modeling of the Si iv and C iv profiles measured by the IUE satellite yields similar scale height estimates. The scale height results contrast with previous studies of highly ionized gas in the outer Milky Way that reveal a more extended gas distribtion with h approximately equals 3-4 kpc. We detect a high-velocity feature in N v and Si II v(sub LSR) approximately equals + 125 km/s) that is probably created in an interface between warm and hot gas.

Flow cytometric characterization of the response of Fanconi's anemia cells to mitomycin C treatment.

PubMed

Kaiser, T N; Lojewski, A; Dougherty, C; Juergens, L; Sahar, E; Latt, S A

1982-03-01

DNA flow histogram analysis, using 33342 Hoechst as a stain, has been used to detect the effect of the potentially bifunctional alkylating agent, mitomycin C (MMC) on dermal fibroblasts from patients with Fanconi's anemia (FA), a hereditary human disease characterized by pancytopenia, hypersensitivity to DNA-crosslinking agents, congenital abnormalities and a predisposition for neoplasia. At 24 or 48 hr after a 2-hr exposure to 0.05 or 0.10 micrograms/ml MMC, (3)HdT incorporation was reduced to a greater extent in FA cells than in normal cells. Cells sorted from the last half of S phase showed a slightly greater inhibition of (3)HdT incorporation than did those sorted from the first half of S. Fanconi's anemia cells exhibited a marked accumulation in the G(2) + M peak of flow histograms following exposure to MMC. Twenty-four hr after treatment with .0.5 micrograms/ml MMC, the G(2) + M fraction of FA cells (eight lines) increased to more than 0.5 from a control value of approximately 0.02. Both normals (six lines) and heterozygotes (eight lines) showed, on the average, much less of a G(2) + M increment than did FA cells, even after exposure to 0.1 micrograms/ml MMC. Examination of cells sorted from the G(2) + M peak revealed that MMC-treated FA cells were blocked prior to mitosis. To determine whether the response of FA cells was specific for bifunctional alkylating agent, cells were also treated with ethylmethanesulfonate, a monofunctional agent. Twenty-four hours after exposure to 0.25 or 0.5 mg/ml ethylmethanesulfonate, FA and normal cells showed similar, small increases in the G(2) + M peak. The results suggest the utility of flow cytometry in the diagnostic evaluation of fibroblasts from patients suspected of having Fanconi's anemia.

Real-Time Pattern Recognition - An Industrial Example

NASA Astrophysics Data System (ADS)

Fitton, Gary M.

1981-11-01

Rapid advancements in cost effective sensors and micro computers are now making practical the on-line implementation of pattern recognition based systems for a variety of industrial applications requiring high processing speeds. One major application area for real time pattern recognition is in the sorting of packaged/cartoned goods at high speed for automated warehousing and return goods cataloging. While there are many OCR and bar code readers available to perform these functions, it is often impractical to use such codes (package too small, adverse esthetics, poor print quality) and an approach which recognizes an item by its graphic content alone is desirable. This paper describes a specific application within the tobacco industry, that of sorting returned cigarette goods by brand and size.

SDP_mharwit_1: Demonstration of HIFI Linear Polarization Analysis of Spectral Features

NASA Astrophysics Data System (ADS)

Harwit, M.

2010-03-01

We propose to observe the polarization of the 621 GHz water vapor maser in VY Canis Majoris to demonstrate the capability of HIFI to make polarization observations of Far-Infrared/Submillimeter spectral lines. The proposed Demonstration Phase would: - Show that HIFI is capable of interesting linear polarization measurements of spectral lines; - Test out the highest spectral resolving power to sort out closely spaced Doppler components; - Determine whether the relative intensities predicted by Neufeld and Melnick are correct; - Record the degree and direction of linear polarization for the closely-Doppler shifted peaks.

Response of a mouse hybridoma cell line to heat shock, agitation, and sparging

NASA Technical Reports Server (NTRS)

Passini, Cheryl A.; Goochee, Charles F.

1989-01-01

A mouse hybridoma cell line is used as a model system for studying the effect of environmental stress on attachment-independent mammalian cells. The full time course of recovery for a mouse hybridoma cell line from both a mild and intermediate heat shock is examined. The pattern of intracellular synthesis is compared for actively growing, log phase cells and nondividing, stationary phase cells.

Predictive performance of the human Cell Line Activation Test (h-CLAT) for lipophilic chemicals with high octanol-water partition coefficients.

PubMed

Takenouchi, Osamu; Miyazawa, Masaaki; Saito, Kazutoshi; Ashikaga, Takao; Sakaguchi, Hitoshi

2013-01-01

To meet the urgent need for a reliable alternative test for predicting skin sensitizing potential of many chemicals, we have developed a cell-based in vitro test, human Cell Line Activation Test (h-CLAT). However, the predictive performance for lipophilic chemicals in the h-CLAT still remains relatively unknown. Moreover, it's suggested that low water solubility of chemicals might induce false negative outcomes. Thus, in this study, we tested relatively low water soluble 37 chemicals with log Kow values above and below 3.5 in the h-CLAT. The small-scale assessment resulted in nine false negative outcomes for chemicals with log Kow values greater than 3.5. We then created a dataset of 143 chemicals by combining the existing dataset of 106 chemicals and examined the predictive performance of the h-CLAT for chemicals with a log Kow of less than 3.5; a total of 112 chemicals from the 143 chemicals in the dataset. The sensitivity and overall accuracy for the 143 chemicals were 83% and 80%, respectively. In contrast, sensitivity and overall accuracy for the 112 chemicals with log Kow values below 3.5 improved to 94% and 88%, respectively. These data suggested that the h-CLAT could successfully detect sensitizers with log Kow values up to 3.5. When chemicals with log Kow values greater than 3.5 that were deemed positive by h-CLAT were included with the 112 chemicals, the sensitivity and accuracy in terms of the resulting applicable 128 chemicals out of the 143 chemicals became 95% and 88%, respectively. The use of log Kow values gave the h-CLAT a higher predictive performance. Our results demonstrated that the h-CLAT could predict sensitizing potential of various chemicals, which contain lipophilic chemicals using a large-scale chemical dataset.

EUV SPECTRAL LINE FORMATION AND THE TEMPERATURE STRUCTURE OF ACTIVE REGION FAN LOOPS: OBSERVATIONS WITH HINODE/EIS AND SDO/AIA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brooks, David H.; Young, Peter R.; Warren, Harry P., E-mail: dhbrooks@ssd5.nrl.navy.mil

2011-04-01

With the aim of studying active region fan loops using observations from the Hinode EUV Imaging Spectrometer (EIS) and Solar Dynamics Observatory Atmospheric Imaging Assembly (AIA), we investigate a number of inconsistencies in modeling the absolute intensities of Fe VIII and Si VII lines, and address why spectroheliograms formed from these lines look very similar despite the fact that ionization equilibrium calculations suggest that they have significantly different formation temperatures: log(T{sub e} /K) = 5.6 and 5.8, respectively. It is important to resolve these issues because confidence has been undermined in their use for differential emission measure (DEM) analysis, andmore » Fe VIII is the main contributor to the AIA 131 A channel at low temperatures. Furthermore, the strong Fe VIII 185.213 A and Si VII 275.368 A lines are the best EIS lines to use for velocity studies in the transition region, and for assigning the correct temperature to velocity measurements in the fans. We find that the Fe VIII 185.213 A line is particularly sensitive to the slope of the DEM, leading to disproportionate changes in its effective formation temperature. If the DEM has a steep gradient in the log(T{sub e} /K) = 5.6-5.8 temperature range, or is strongly peaked, Fe VIII 185.213 A and Si VII 275.368 A will be formed at the same temperature. We show that this effect explains the similarity of these images in the fans. Furthermore, we show that the most recent ionization balance compilations resolve the discrepancies in absolute intensities. With these difficulties overcome, we combine EIS and AIA data to determine the temperature structure of a number of fan loops and find that they have peak temperatures of 0.8-1.2 MK. The EIS data indicate that the temperature distribution has a finite (but narrow) width < log ({sigma}{sub Te}/K) = 5.5 which, in one detailed case, is found to broaden substantially toward the loop base. AIA and EIS yield similar results on the temperature, emission measure magnitude, and thermal distribution in the fans, though sometimes the AIA data suggest a relatively larger thermal width. The result is that both the Fe VIII 185.213 A and Si VII 275.368 A lines are formed at log(T{sub e} /K){approx} 5.9 in the fans, and the AIA 131 A response also shifts to this temperature.« less

Volcano plots in analyzing differential expressions with mRNA microarrays.

PubMed

Li, Wentian

2012-12-01

A volcano plot displays unstandardized signal (e.g. log-fold-change) against noise-adjusted/standardized signal (e.g. t-statistic or -log(10)(p-value) from the t-test). We review the basic and interactive use of the volcano plot and its crucial role in understanding the regularized t-statistic. The joint filtering gene selection criterion based on regularized statistics has a curved discriminant line in the volcano plot, as compared to the two perpendicular lines for the "double filtering" criterion. This review attempts to provide a unifying framework for discussions on alternative measures of differential expression, improved methods for estimating variance, and visual display of a microarray analysis result. We also discuss the possibility of applying volcano plots to other fields beyond microarray.

REPHLEX II: An information management system for the ARS Water Data Base

NASA Astrophysics Data System (ADS)

Thurman, Jane L.

1993-08-01

The REPHLEX II computer system is an on-line information management system which allows scientists, engineers, and other researchers to retrieve data from the ARS Water Data Base using asynchronous communications. The system features two phone lines handling baud rates from 300 to 2400, customized menus to facilitate browsing, help screens, direct access to information and data files, electronic mail processing, file transfers using the XMODEM protocol, and log-in procedures which capture information on new users, process passwords, and log activity for a permanent audit trail. The primary data base on the REPHLEX II system is the ARS Water Data Base which consists of rainfall and runoff data from experimental agricultural watersheds located in the United States.

A resonant absorption line in the ASCA spectrum of NGC 985?

NASA Astrophysics Data System (ADS)

Nicastro, F.; Fiore, F.; Brandt, N.; Reynolds, C. S.

1999-01-01

We present timing and spectral analyses of the ASCA observation of the Seyfert 1 galaxy NGC 985. The 0.6-10keV spectrum of this source is complex: large residuals are evident below 1keV when fitting the spectrum with a power-law model. Fitting a warm absorber model to the 0.6-2.5keV spectrum gives α=1.12+/-0.04, LogNWAH=21.97+/-0.08 and LogU=0.06+/-0.09, but the residuals continue to show a deficit of counts between 0.9 and 1keV. Adding an absorption line improves the fit, and the energy of the line is consistent with that of Kα NeIX-X resonant absorption lines. Hence, we confirm the presence of an ionized absorber along the line of sight to this source and interpret the further 1keV spectral feature as the first detection of a strong resonant absorption line associated with this system. The extrapolation of this model above 2.5keV produces large positive residuals above 3-4keV. Fitting the data with a broken power law plus warm absorber model gives an acceptable χ2 and Δα~0.5. A narrow iron line at 6.4keV (quasar frame) of equivalent width 138+64-110eV is also present in the ASCA data.

Beach Profile Analysis System (BPAS). Volume VII. BPAS User’s Guide: Analysis Module ELVDIS.

DTIC Science & Technology

1982-06-01

changes, common bonds are established relative to the landward and seaward extent of the surveys on each profile line. The computed area under each pro...Cyber 176 or equivalent computer. Such features include the 10-character, 60- bit word size, the FORTRAN- callable sort routine (interfacing with the NOS

Transposon-mediated generation of BCR-ABL1-expressing transgenic cell lines for unbiased sensitivity testing of tyrosine kinase inhibitors.

PubMed

Byrgazov, Konstantin; Lucini, Chantal Blanche; Berkowitsch, Bettina; Koenig, Margit; Haas, Oskar A; Hoermann, Gregor; Valent, Peter; Lion, Thomas

2016-11-22

Point mutations in the ABL1 kinase domain are an important mechanism of resistance to tyrosine kinase inhibitors (TKI) in BCR-ABL1-positive and, as recently shown, BCR-ABL1-like leukemias. The cell line Ba/F3 lentivirally transduced with mutant BCR-ABL1 constructs is widely used for in vitro sensitivity testing and response prediction to tyrosine kinase inhibitors. The transposon-based Sleeping Beauty system presented offers several advantages over lentiviral transduction including the absence of biosafety issues, faster generation of transgenic cell lines, and greater efficacy in introducing large gene constructs. Nevertheless, both methods can mediate multiple insertions in the genome. Here we show that multiple BCR-ABL1 insertions result in elevated IC50 levels for individual TKIs, thus overestimating the actual resistance of mutant subclones. We have therefore established flow-sorting-based fractionation of BCR-ABL1-transformed Ba/F3 cells facilitating efficient enrichment of cells carrying single-site insertions, as demonstrated by FISH-analysis. Fractions of unselected Ba/F3 cells not only showed a greater number of BCR-ABL1 hybridization signals, but also revealed higher IC50 values for the TKIs tested. The data presented highlight the need to carefully select transfected cells by flow-sorting, and to control the insertion numbers by FISH and real-time PCR to permit unbiased in vitro testing of drug resistance.

Convective Mixing in Distal Pipes Exacerbates Legionella pneumophila Growth in Hot Water Plumbing

PubMed Central

Rhoads, William J.; Pruden, Amy; Edwards, Marc A.

2016-01-01

Legionella pneumophila is known to proliferate in hot water plumbing systems, but little is known about the specific physicochemical factors that contribute to its regrowth. Here, L. pneumophila trends were examined in controlled, replicated pilot-scale hot water systems with continuous recirculation lines subject to two water heater settings (40 °C and 58 °C) and three distal tap water use frequencies (high, medium, and low) with two pipe configurations (oriented upward to promote convective mixing with the recirculating line and downward to prevent it). Water heater temperature setting determined where L. pneumophila regrowth occurred in each system, with an increase of up to 4.4 log gene copies/mL in the 40 °C system tank and recirculating line relative to influent water compared to only 2.5 log gene copies/mL regrowth in the 58 °C system. Distal pipes without convective mixing cooled to room temperature (23–24 °C) during periods of no water use, but pipes with convective mixing equilibrated to 30.5 °C in the 40 °C system and 38.8 °C in the 58 °C system. Corresponding with known temperature effects on L. pneumophila growth and enhanced delivery of nutrients, distal pipes with convective mixing had on average 0.2 log more gene copies/mL in the 40 °C system and 0.8 log more gene copies/mL in the 58 °C system. Importantly, this work demonstrated the potential for thermal control strategies to be undermined by distal taps in general, and convective mixing in particular. PMID:26985908

HST/COS detection of a Ne VIII absorber towards PG 1407+265: an unambiguous tracer of collisionally ionized hot gas?

NASA Astrophysics Data System (ADS)

Hussain, T.; Muzahid, S.; Narayanan, A.; Srianand, R.; Wakker, B. P.; Charlton, J. C.; Pathak, A.

2015-01-01

We report the detection of Ne VIII in a zabs = 0.599 61 absorber towards the QSO PG1407+265 (zem= 0.94). Besides Ne VIII, absorption from H I Lyman series lines (H I λ1025-λ915), several other low (C II, N II, O II and S II), intermediate (C III, N III, N IV, O III, S IV and S V) and high (S VI, O VI and Ne VIII) ionization metal lines are detected. Disparity in the absorption line kinematics between different ions implies that the absorbing gas comprises of multiple ionization phases. The low and the intermediate ions (except S V) trace a compact (˜410 pc), metal-rich (Z ˜ Z⊙) and overdense (log nH ˜ -2.6) photoionized region that sustained star formation for a prolonged period. The high ions, Ne VIII and O VI, can be explained as arising in a low density (-5.3 ≤ log nH ≤ -5.0), metal-rich (Z ≳ Z⊙) and diffuse (˜180 kpc) photoionized gas. The S V, S VI and C IV [detected in the Faint Object Spectrograph (FOS) spectrum] require an intermediate photoionization phase with -4.2 < log nH < -3.5. Alternatively, a pure collisional ionization model, as used to explain the previous known Ne VIII absorbers, with 5.65 < log T < 5.72, can reproduce the S VI, O VI and Ne VIII column densities simultaneously in a single phase. However, even such models require an intermediate phase to reproduce any observable S V and/or C IV. Therefore, we conclude that when multiple phases are present, the presence of Ne VIII is not necessarily an unambiguous indication of collisionally ionized hot gas.

THE MOSDEF SURVEY: DISSECTING THE STAR FORMATION RATE VERSUS STELLAR MASS RELATION USING Hα AND Hβ EMISSION LINES AT z ∼ 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shivaei, Irene; Reddy, Naveen A.; Siana, Brian

2015-12-20

We present results on the star formation rate (SFR) versus stellar mass (M{sub *}) relation (i.e., the “main sequence”) among star-forming galaxies at 1.37 ≤ z ≤ 2.61 using the MOSFIRE Deep Evolution Field (MOSDEF) survey. Based on a sample of 261 galaxies with Hα and Hβ spectroscopy, we have estimated robust dust-corrected instantaneous SFRs over a large range in M{sub *} (∼10{sup 9.5}–10{sup 11.5} M{sub ⊙}). We find a correlation between log(SFR(Hα)) and log(M{sub *}) with a slope of 0.65 ± 0.08 (0.58 ± 0.10) at 1.4 < z < 2.6 (2.1 < z < 2.6). We find thatmore » different assumptions for the dust correction, such as using the color excess of the stellar continuum to correct the nebular lines, sample selection biases against red star-forming galaxies, and not accounting for Balmer absorption, can yield steeper slopes of the log(SFR)–log(M{sub *}) relation. Our sample is immune from these biases as it is rest-frame optically selected, Hα and Hβ are corrected for Balmer absorption, and the Hα luminosity is dust corrected using the nebular color excess computed from the Balmer decrement. The scatter of the log(SFR(Hα))–log(M{sub *}) relation, after accounting for the measurement uncertainties, is 0.31 dex at 2.1 < z < 2.6, which is 0.05 dex larger than the scatter in log(SFR(UV))–log(M{sub *}). Based on comparisons to a simulated SFR–M{sub *} relation with some intrinsic scatter, we argue that in the absence of direct measurements of galaxy-to-galaxy variations in the attenuation/extinction curves and the initial mass function, one cannot use the difference in the scatter of the SFR(Hα)– and SFR(UV)–M{sub *} relations to constrain the stochasticity of star formation in high-redshift galaxies.« less

Identification of microbes from the surfaces of food-processing lines based on the flow cytometric evaluation of cellular metabolic activity combined with cell sorting.

PubMed

Juzwa, W; Duber, A; Myszka, K; Białas, W; Czaczyk, K

2016-09-01

In this study the design of a flow cytometry-based procedure to facilitate the detection of adherent bacteria from food-processing surfaces was evaluated. The measurement of the cellular redox potential (CRP) of microbial cells was combined with cell sorting for the identification of microorganisms. The procedure enhanced live/dead cell discrimination owing to the measurement of the cell physiology. The microbial contamination of the surface of a stainless steel conveyor used to process button mushrooms was evaluated in three independent experiments. The flow cytometry procedure provided a step towards monitoring of contamination and enabled the assessment of microbial food safety hazards by the discrimination of active, mid-active and non-active bacterial sub-populations based on determination of their cellular vitality and subsequently single cell sorting to isolate microbial strains from discriminated sub-populations. There was a significant correlation (r = 0.97; p < 0.05) between the bacterial cell count estimated by the pour plate method and flow cytometry, despite there being differences in the absolute number of cells detected. The combined approach of flow cytometric CRP measurement and cell sorting allowed an in situ analysis of microbial cell vitality and the identification of species from defined sub-populations, although the identified microbes were limited to culturable cells.

Osteonal effects on elastic modulus and fatigue life in equine bone.

PubMed

Gibson, V A; Stover, S M; Gibeling, J C; Hazelwood, S J; Martin, R B

2006-01-01

We hypothesized that recently formed, incompletely mineralized, and thus, relatively deformable osteons in the equine third metacarpus enhance in vitro load-controlled fatigue life in two ways. Macroscopically, there is a compliance effect, because reduced tissue elastic modulus diminishes the stress required to reach a given strain. Microscopically, there is a cement line effect, in which new osteons and their cement lines more effectively serve as barriers to crack propagation. We studied 18 4 x 10 x 100 mm beams from the medial, lateral, and dorsal cortices of metacarpal bones from 6 thoroughbred racehorses. Following load-controlled fatigue testing to fracture in 4 point bending, a transverse, 100 microm thick, basic fuchsin-stained cross-section was taken from the load-bearing region. The number and diameter of all intact (and thus recently formed/compliant) secondary osteons in a 3.8 x 3.8 mm region in the center of the section were determined. The associated area fraction and cement line length of intact osteons were calculated, and the relationships between these variables, elastic modulus (E), and the logarithm of fatigue life (logN(F)) were analyzed. As expected, logN(F) was negatively correlated with E, which was in turn negatively correlated with intact osteon area fraction and density. (LogN(F))/E increased in proportion to intact osteon density and nonlinearly with cement line density (mm/mm(2)). These results support the hypothesis that remodeling extends load-controlled fatigue life both through the creation of osteonal barriers to microdamage propagation and modulus reduction.

Analysis of the request patterns to the NSSDC on-line archive

NASA Technical Reports Server (NTRS)

Johnson, Theodore

1994-01-01

NASA missions, both for earth science and for space science, collect huge amounts of data, and the rate at which data is being gathered is increasing. For example, the EOSDIS project is expected to collect petabytes per year. In addition, these archives are being made available to remote users over the Internet. The ability to manage the growth of the size and request activity of scientific archives depends on an understanding of the access patterns of scientific users. The National Space Science Data Center (NSSDC) of NASA Goddard Space Flight Center has run their on-line mass storage archive of space data, the National Data Archive and Distribution Service (NDADS), since November 1991. A large world-wide space research community makes use of NSSDC, requesting more than 20,000 files per month. Since the initiation of their service, they have maintained log files which record all accesses the archive. In this report, we present an analysis of the NDADS log files. We analyze the log files, and discuss several issues, including caching, reference patterns, clustering, and system loading.

The Eye Phone Study: reliability and accuracy of assessing Snellen visual acuity using smartphone technology

PubMed Central

Perera, C; Chakrabarti, R; Islam, F M A; Crowston, J

2015-01-01

Purpose Smartphone-based Snellen visual acuity charts has become popularized; however, their accuracy has not been established. This study aimed to evaluate the equivalence of a smartphone-based visual acuity chart with a standard 6-m Snellen visual acuity (6SVA) chart. Methods First, a review of available Snellen chart applications on iPhone was performed to determine the most accurate application based on optotype size. Subsequently, a prospective comparative study was performed by measuring conventional 6SVA and then iPhone visual acuity using the ‘Snellen' application on an Apple iPhone 4. Results Eleven applications were identified, with accuracy of optotype size ranging from 4.4–39.9%. Eighty-eight patients from general medical and surgical wards in a tertiary hospital took part in the second part of the study. The mean difference in logMAR visual acuity between the two charts was 0.02 logMAR (95% limit of agreement −0.332, 0.372 logMAR). The largest mean difference in logMAR acuity was noted in the subgroup of patients with 6SVA worse than 6/18 (n=5), who had a mean difference of two Snellen visual acuity lines between the charts (0.276 logMAR). Conclusion We did not identify a Snellen visual acuity app at the time of study, which could predict a patients standard Snellen visual acuity within one line. There was considerable variability in the optotype accuracy of apps. Further validation is required for assessment of acuity in patients with severe vision impairment. PMID:25931170

STUDYING THE WHIM CONTENT OF LARGE-SCALE STRUCTURES ALONG THE LINE OF SIGHT TO H 2356-309

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zappacosta, L.; Nicastro, F.; Maiolino, R.

2010-07-01

We make use of a 500 ks Chandra HRC-S/LETG spectrum of the blazar H 2356-309, combined with a lower signal-to-noise ratio (S/N; 100 ks) pilot LETG spectrum of the same target, to search for the presence of warm-hot absorbing gas associated with two large-scale structures (LSSs) crossed by this sight line and to constrain its physical state and geometry. Strong (log N{sub O{sub VII}} {>=} 10{sup 16} cm{sup -2}) O VII K{alpha} absorption associated with a third LSS crossed by this line of sight (the Sculptor Wall (SW)), at z = 0.03, has already been detected in a previous work.more » Here, we focus on two additional prominent filamentary LSSs along the same line of sight, one at z = 0.062 (the Pisces-Cetus Supercluster (PCS)) and another at z = 0.128 (the 'Farther Sculptor Wall' (FSW)). The combined LETG spectrum has an S/N of {approx}11.6-12.6 per resolution element in the 20-25 A and an average 3{sigma} sensitivity to intervening O VII K{alpha} absorption line equivalent widths (EWs) of EW{sub O{sub VII}} {approx_gt} 14 mA in the available redshift range (z < 0.165). No statistically significant (i.e., {>=}3{sigma}) individual absorption is detected from any of the strong He- or H-like transitions of C, O, and Ne (the most abundant metals in gas with solar-like composition) at the redshifts of the PCS and FSW structures and down to the EW thresholds mentioned above. However, we are still able to constrain the physical and geometrical parameters of the putative absorbing gas associated with these structures, by performing a joint spectral fit of various marginal detections and upper limits of the strongest expected lines with our self-consistent hybrid-ionization WHIM spectral model. At the redshift of the PCS, we identify a warm phase with log T = 5.35{sup +0.07}{sub -0.13} K and log N{sub H} = (19.1 {+-} 0.2) cm{sup -2} possibly co-existing with a much hotter and statistically less significant phase with log T = 6.9{sup +0.1}{sub -0.8} K and log N{sub H} = 20.1{sup +0.3}{sub -1.7} cm{sup -2} (1{sigma} errors). These two separate physical phases are identified through, and mainly constrained by, C V K{alpha} (warm phase) and O VIII K{alpha} (hot phase) absorption, with single line significances of 1.5{sigma} each. For the second LSS, at z {approx_equal} 0.128, only one hot component is hinted in the data, through O VIII K{alpha} (1.6{sigma}) and Ne IX K{alpha} (1.2{sigma}). For this system, we estimate log T = 6.6{sup +0.1}{sub -0.2} K and log N{sub H} = 19.8{sup +0.4}{sub -0.8} cm{sup -2}. Our column density and temperature constraints on the warm-hot gaseous content of these two LSSs, combined with the measurements obtained for the hot gas permeating the SW, allow us to estimate the cumulative number density per unit redshifts of O VII WHIM absorbers at three different EW thresholds of 0.4 mA, 7 mA, and 25.8 mA. This is consistent with expectations only at the very low end of EW thresholds, but exceeds predictions at 7 mA and 25.8 mA (by more than 2{sigma}). We also estimate the cosmological mass density of the WHIM based on the four absorbers we tentatively detect along this line of sight, obtaining {Omega}{sup WHIM}{sub b} = (0.021{sup +0.031}{sub -0.018})(Z/Z{sub sun}){sup -1}, consistent with the cosmological mass density of the intergalactic 'missing baryons' only if we assume high metallicities (Z {approx} Z{sub sun}).« less

Energy, entropy and mass scaling relations for elliptical galaxies. Towards a physical understanding of their photometric properties

NASA Astrophysics Data System (ADS)

Márquez, I.; Lima Neto, G. B.; Capelato, H.; Durret, F.; Lanzoni, B.; Gerbal, D.

2001-12-01

In the present paper, we show that elliptical galaxies (Es) obey a scaling relation between potential energy and mass. Since they are relaxed systems in a post violent-relaxation stage, they are quasi-equilibrium gravitational systems and therefore they also have a quasi-constant specific entropy. Assuming that light traces mass, these two laws imply that in the space defined by the three Sérsic law parameters (intensity Sigma0 , scale a and shape nu ), elliptical galaxies are distributed on two intersecting 2-manifolds: the Entropic Surface and the Energy-Mass Surface. Using a sample of 132 galaxies belonging to three nearby clusters, we have verified that ellipticals indeed follow these laws. This also implies that they are distributed along the intersection line (the Energy-Entropy line), thus they constitute a one-parameter family. These two physical laws (separately or combined), allow to find the theoretical origin of several observed photometrical relations, such as the correlation between absolute magnitude and effective surface brightness, and the fact that ellipticals are located on a surface in the [log Reff, -2.5 log Sigma0, log nu ] space. The fact that elliptical galaxies are a one-parameter family has important implications for cosmology and galaxy formation and evolution models. Moreover, the Energy-Entropy line could be used as a distance indicator.

The Role of Radiation Pressure in the Narrow Line Regions of Seyfert Host Galaxies

NASA Astrophysics Data System (ADS)

Davies, Rebecca L.; Dopita, Michael A.; Kewley, Lisa; Groves, Brent; Sutherland, Ralph; Hampton, Elise J.; Shastri, Prajval; Kharb, Preeti; Bhatt, Harish; Scharwächter, Julia; Jin, Chichuan; Banfield, Julie; Zaw, Ingyin; James, Bethan; Juneau, Stéphanie; Srivastava, Shweta

2016-06-01

We investigate the relative significance of radiation pressure and gas pressure in the extended narrow line regions (ENLRs) of four Seyfert galaxies from the integral field Siding Spring Southern Seyfert Spectroscopic Snapshot Survey (S7). We demonstrate that there exist two distinct types of starburst-active galactic nucleus (AGN) mixing curves on standard emission line diagnostic diagrams, which reflect the balance between gas pressure and radiation pressure in the ENLR. In two of the galaxies the ENLR is radiation pressure dominated throughout and the ionization parameter remains constant (log U ˜ 0). In the other two galaxies radiation pressure is initially important, but gas pressure becomes dominant as the ionization parameter in the ENLR decreases from log U ˜ 0 to -3.2 ≲ log U ≲ -3.4. Where radiation pressure is dominant, the AGN regulates the density of the interstellar medium on kiloparsec scales and may therefore have a direct impact on star formation activity and/or the incidence of outflows in the host galaxy to scales far beyond the zone of influence of the black hole. We find that both radiation pressure dominated and gas pressure dominated ENLRs are dynamically active with evidence for outflows, indicating that radiation pressure may be an important source of AGN feedback even when it is not dominant over the entire ENLR.

Vega: A rapidly rotating pole-on star

NASA Technical Reports Server (NTRS)

Gulliver, Austin F.; Hill, Graham; Adelman, Saul J.

1994-01-01

High-dispersion (2.4 A/mm), ultrahigh signal-to-noise ratio (3000:1) Reticon spectra of Vega revealed two distinct types of profiles. The strong lines exhibit classical rotational profiles with enhanced wings, but the weak lines have distinctly different, flat-bottomed profiles. Using ATLAS9 model atmopheres and SYNTHE synthetic spectra, Vega has been modeled as a rapidly rotating, pole-on star with a gradient in temperature and gravity over the photosphere. By fitting to the flat-bottomed line profiles of Fe 1 lambda 4528 and Ti 2 lambda 4529, we find least-squares fit values of V sin i = 21.8 plus or minus 0.2 km/sec polar T(sub eff) = 9695 plus or minus 25 K, polar log(base 10)g = 3.75 plus or minus 0.02 dex, V(sub eq) = 245 plus or minus 15 km/sec, and inclination 5 deg .1 plus or minus 0 deg .3. The variations in T(sub eff) and log(base 10)g over the photosphere total 390 K and 0.08 dex, respectively. Assuming V sin i = 21.8 km/sec, an independent fit to the observed continuous flux from 1200 to 10,500 A produced a similar set of values with polar T(sub eff) = 9595 plus or minus 20 K, polar log(base 10)g = 3.80 plus or minus 0.03 dex, and inclination 6 deg .0 plus or minus 0 deg .7.

Proposed standard-weight (Ws) equation and length-categorization standards for brown trout (Salmo trutta) in lentic habitats

USGS Publications Warehouse

Hyatt, M.W.; Hubert, W.A.

2001-01-01

We developed a standard-weight (Ws) equation for brown trout (Salmo trutta) in lentic habitats by applying the regression-line-percentile technique to samples from 49 populations in North America. The proposed Ws equation is log10 Ws = -5.422 + 3.194 log10 TL, when Ws is in grams and TL is total length in millimeters. The English-unit equivalent is log10 Ws = -3.592 + 3.194 log10 TL, when Ws is in pounds and TL is total length in inches. The equation is applicable for fish of 140-750 mm TL. Proposed length-category standards to evaluate fish within populations are: stock, 200 mm (8 in); quality, 300 mm (12 in); preferred, 400 mm (16 in); memorable, 500 mm (20 in); and trophy, 600 mm (24 in).

77 FR 20823 - Jyotin Parikh: Debarment Order

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-06

... failing to properly investigate, log and archive questionable, aberrant, and unacceptable laboratory... market new product lines. In furtherance of the conspiracy, in or around March 2003, Mr. Parikh...

MHC class II/ESO tetramer-based generation of in vitro primed anti-tumor T-helper lines for adoptive cell therapy of cancer.

PubMed

Poli, Caroline; Raffin, Caroline; Dojcinovic, Danijel; Luescher, Immanuel; Ayyoub, Maha; Valmori, Danila

2013-02-01

Generation of tumor-antigen specific CD4(+) T-helper (T(H)) lines through in vitro priming is of interest for adoptive cell therapy of cancer, but the development of this approach has been limited by the lack of appropriate tools to identify and isolate low frequency tumor antigen-specific CD4(+) T cells. Here, we have used recently developed MHC class II/peptide tetramers incorporating an immunodominant peptide from NY-ESO-1 (ESO), a tumor antigen frequently expressed in different human solid and hematologic cancers, to implement an in vitro priming platform allowing the generation of ESO-specific T(H) lines. We isolated phenotypically defined CD4(+) T-cell subpopulations from circulating lymphocytes of DR52b(+) healthy donors by flow cytometry cell sorting and stimulated them in vitro with peptide ESO(119-143), autologous APC and IL-2. We assessed the frequency of ESO-specific cells in the cultures by staining with DR52b/ESO(119-143) tetramers (ESO-tetramers) and TCR repertoire of ESO-tetramer(+) cells by co-staining with TCR variable β chain (BV) specific antibodies. We isolated ESO-tetramer(+) cells by flow cytometry cell sorting and expanded them with PHA, APC and IL-2 to generate ESO-specific T(H) lines. We characterized the lines for antigen recognition, by stimulation with ESO peptide or recombinant protein, cytokine production, by intracellular staining using specific antibodies, and alloreactivity, by stimulation with allo-APC. Using this approach, we could consistently generate ESO-tetramer(+) T(H) lines from conventional CD4(+)CD25(-) naïve and central memory populations, but not from effector memory populations or CD4(+)CD25(+) Treg. In vitro primed T(H) lines recognized ESO with affinities comparable to ESO-tetramer(+) cells from patients immunized with an ESO vaccine and used a similar TCR repertoire. In this study, using MHC class II/ESO tetramers, we have implemented an in vitro priming platform allowing the generation of ESO-monospecific polyclonal T(H) lines from non-immune individuals. This is an approach that is of potential interest for adoptive cell therapy of patients bearing ESO-expressing cancers.

A General Purpose Connections type CTI Server Based on SIP Protocol and Its Implementation

NASA Astrophysics Data System (ADS)

Watanabe, Toru; Koizumi, Hisao

In this paper, we propose a general purpose connections type CTI (Computer Telephony Integration) server that provides various CTI services such as voice logging where the CTI server communicates with IP-PBX using the SIP (Session Initiation Protocol), and accumulates voice packets of external line telephone call flowing between an IP telephone for extension and a VoIP gateway connected to outside line networks. The CTI server realizes CTI services such as voice logging, telephone conference, or IVR (interactive voice response) with accumulating and processing voice packets sampled. Furthermore, the CTI server incorporates a web server function which can provide various CTI services such as a Web telephone directory via a Web browser to PCs, cellular telephones or smart-phones in mobile environments.

Binocular iPad Game vs Patching for Treatment of Amblyopia in Children: A Randomized Clinical Trial.

PubMed

Kelly, Krista R; Jost, Reed M; Dao, Lori; Beauchamp, Cynthia L; Leffler, Joel N; Birch, Eileen E

2016-12-01

Fellow eye patching has long been the standard treatment for amblyopia, but it does not always restore 20/20 vision or teach the eyes to work together. Amblyopia can be treated with binocular games that rebalance contrast between the eyes so that a child may overcome suppression. However, it is unclear whether binocular treatment is comparable to patching in treating amblyopia. To assess the effectiveness of a binocular iPad (Apple Inc) adventure game as amblyopia treatment and compare this binocular treatment with patching, the current standard of care. This investigation was a randomized clinical trial with a crossover design at a nonprofit eye research institute. Between February 20, 2015, and January 4, 2016, a total of 28 patients were enrolled in the study, with 14 randomized to binocular game treatment and 14 to patching treatment. Binocular game and patching as amblyopia treatments. The primary outcome was change in amblyopic eye best-corrected visual acuity (BCVA) at the 2-week visit. Secondary outcomes were change in stereoacuity and suppression at the 2-week visit and change in BCVA at the 4-week visit. Among 28 children, the mean (SD) age at baseline was 6.7 (1.4) years (age range, 4.6-9.5 years), and 7 (25%) were female. At baseline, the mean (SD) amblyopic eye BCVA was 0.48 (0.14) logMAR (approximately 20/63; range, 0.3-0.8 logMAR [20/40 to 20/125]), with 14 children randomized to the binocular game and 14 to patching for 2 weeks. At the 2-week visit, improvement in amblyopic eye BCVA was greater with the binocular game compared with patching, with a mean (SD) improvement of 0.15 (0.08) logMAR (mean [SD], 1.5 [0.8] lines) vs 0.07 (0.08) logMAR (mean [SD], 0.7 [0.8] line; P = .02) after 2 weeks of treatment. These improvements from baseline were significant for the binocular game (mean [SD] improvement, 1.5 [0.8] lines; P < .001) and for patching (mean [SD] improvement, 0.7 [0.8] line; P = .006). Depth of suppression improved from baseline at the 2-week visit for the binocular game (mean [SD], 4.82 [2.82] vs 3.24 [2.87]; P = .03) and for patching (mean [SD], 4.77 [3.10] vs 2.57 [1.67]; P = .004). Patching children crossed over to binocular game treatment, and all 28 children played the game for another 2 weeks. At the 4-week visit, no group difference was found in BCVA change, with children who crossed over to the binocular games catching up with children treated with binocular games, for a mean (SD) improvement of 0.17 (0.10) logMAR (mean [SD], 1.7 [1.0] lines) for the binocular game vs a mean (SD) improvement of 0.16 (0.12) logMAR (mean [SD], 1.6 [1.2] lines) for the patching crossover (P = .73). A binocular iPad game was effective in treating childhood amblyopia and was more efficacious than patching at the 2-week visit. Binocular games that rebalance contrast to overcome suppression are a promising additional option for treating amblyopia. clinicaltrials.gov Identifier: NCT02365090.

An Update: Changes Abound in Forestry Cost-Share Assistance Programs

Treesearch

Robert J. Moulton

1999-01-01

There have been some major changes in the line-up and funding for federal incentive programs that provide technical and financial assistance to non-industrial private forest (NIPF) landowners since I last reported on this subject ("Sorting Through Cost-Share Assistance Programs," Nov./Dec. 1994 Tree Farmer). The purpose of this article is to bring you up to...

The GARP Complex Is Involved in Intracellular Cholesterol Transport via Targeting NPC2 to Lysosomes.

PubMed

Wei, Jian; Zhang, Ying-Yu; Luo, Jie; Wang, Ju-Qiong; Zhou, Yu-Xia; Miao, Hong-Hua; Shi, Xiong-Jie; Qu, Yu-Xiu; Xu, Jie; Li, Bo-Liang; Song, Bao-Liang

2017-06-27

Proper intracellular cholesterol trafficking is critical for cellular function. Two lysosome-resident proteins, NPC1 and NPC2, mediate the egress of low-density lipoprotein-derived cholesterol from lysosomes. However, other proteins involved in this process remain largely unknown. Through amphotericin B-based selection, we isolated two cholesterol transport-defective cell lines. Subsequent whole-transcriptome-sequencing analysis revealed two cell lines bearing the same mutation in the vacuolar protein sorting 53 (Vps53) gene. Depletion of VPS53 or other subunits of the Golgi-associated retrograde protein (GARP) complex impaired NPC2 sorting to lysosomes and caused cholesterol accumulation. GARP deficiency blocked the retrieval of the cation-independent mannose 6-phosphate receptor (CI-MPR) to the trans-Golgi network. Further, Vps54 mutant mice displayed reduced cellular NPC2 protein levels and increased cholesterol accumulation, underscoring the physiological role of the GARP complex in cholesterol transport. We conclude that the GARP complex contributes to intracellular cholesterol transport by targeting NPC2 to lysosomes in a CI-MPR-dependent manner. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.

Morphology of single inhalable particle inside public transit biodiesel fueled bus.

PubMed

Shandilya, Kaushik K; Kumar, Ashok

2010-01-01

In an urban-transit bus, fueled by biodiesel in Toledo, Ohio, single inhalable particle samples in October 2008 were collected and detected by scanning electron microscopy and energy dispersive X-ray spectrometry (SEM/EDS). Particle size analysis found bimodal distribution at 0.2 and 0.5 microm. The particle morphology was characterized by 14 different shape clusters: square, pentagon, hexagon, heptagon, octagon, nonagon, decagon, agglomerate, sphere, triangle, oblong, strip, line or stick, and unknown, by quantitative order. The square particles were common in the samples. Round and triangle particles are more, and pentagon, hexagon, heptagon, octagon, nonagon, decagon, strip, line or sticks are less. Agglomerate particles were found in abundance. The surface of most particles was coarse with a fractal edge that can provide a suitable chemical reaction bed in the polluted atmospheric environment. The three sorts of surface patterns of squares were smooth, semi-smooth, and coarse. The three sorts of square surface patterns represented the morphological characteristics of single inhalable particles in the air inside the bus in Toledo. The size and shape distribution results were compared to those obtained for a bus using ultra low sulfur diesel.

Speed genome editing by transient CRISPR/Cas9 targeting and large DNA fragment deletion.

PubMed

Luo, Jing; Lu, Liaoxun; Gu, Yanrong; Huang, Rong; Gui, Lin; Li, Saichao; Qi, Xinhui; Zheng, Wenping; Chao, Tianzhu; Zheng, Qianqian; Liang, Yinming; Zhang, Lichen

2018-06-07

Genetic engineering of cell lines and model organisms has been facilitated enormously by the CRISPR/Cas9 system. However, in cell lines it remains labor intensive and time consuming to obtain desirable mutant clones due to the difficulties in isolating the mutated clones and sophisticated genotyping. In this study, we have validated fluorescent protein reporter aided cell sorting which enables the isolation of maximal diversity in mutant cells. We further applied two spectrally distinct fluorescent proteins DsRed2 and ECFP as reporters for independent CRISPR/Cas9 mediated targeting, which allows for one-cell-one-well sorting of the mutant cells. Because of ultra-high efficiency of the CRISPR/Cas9 system with dual reporters and large DNA fragment deletion resulting from independent loci cleavage, monoclonal mutant cells could be easily identified by conventional PCR. In the speed genome editing method presented here, sophisticated genotyping methods are not necessary to identify loss of function mutations after CRISPR/Cas9 genome editing, and desirable loss of function mutant clones could be obtained in less than one month following transfection. Copyright © 2018 Elsevier B.V. All rights reserved.

Using Plasticity Values Determined From Systematic Hardness Indentation Measurements for Predicting Impact Behavior in Structural Ceramics: A New, Simple Screening Technique

DTIC Science & Technology

2009-09-01

kFc ) is shown to fit the Knoop data quite well. A plot of log10 (HK) vs. log10 (F) yielded easily comparable straight lines, whose slope and...AlON), silicon carbide, aluminum oxide and boron carbide. A power-law equation (H = kFc ) is shown to fit the Knoop data quite well. A plot of log10... kFc HK= 24.183 F-0.0699 R2= 0.97 H K (G Pa ) Load (N) HK = a/F + b ErrorValue 0.919483.7367a 0.6903619.361b NA25.591Chisq NA0.67368R2 1 1.1 1.2

Spectral Analysis of the sdO Standard Star Feige 34

NASA Astrophysics Data System (ADS)

Latour, M.; Chayer, P.; Green, E. M.; Fontaine, G.

2017-03-01

We present our current work on the spectral analysis of the hot sdO star Feige 34. We combine high S/N optical spectra and fully-blanketed non-LTE model atmospheres to derive its fundamental parameters (Teff, log g) and helium abundance. Our best fits indicate Teff = 63 000 K, log g = 6.0 and log N(He)/N(H) = -1.8. We also use available ultraviolet spectra (IUE and FUSE) to measure metal abundances. We find the star to be enriched in iron and nickel by a factor of ten with respect to the solar values, while lighter elements have subsolar abundances. The FUSE spectrum suggests that the spectral lines could be broadened by rotation.

Colour image compression by grey to colour conversion

NASA Astrophysics Data System (ADS)

Drew, Mark S.; Finlayson, Graham D.; Jindal, Abhilash

2011-03-01

Instead of de-correlating image luminance from chrominance, some use has been made of using the correlation between the luminance component of an image and its chromatic components, or the correlation between colour components, for colour image compression. In one approach, the Green colour channel was taken as a base, and the other colour channels or their DCT subbands were approximated as polynomial functions of the base inside image windows. This paper points out that we can do better if we introduce an addressing scheme into the image description such that similar colours are grouped together spatially. With a Luminance component base, we test several colour spaces and rearrangement schemes, including segmentation. and settle on a log-geometric-mean colour space. Along with PSNR versus bits-per-pixel, we found that spatially-keyed s-CIELAB colour error better identifies problem regions. Instead of segmentation, we found that rearranging on sorted chromatic components has almost equal performance and better compression. Here, we sort on each of the chromatic components and separately encode windows of each. The result consists of the original greyscale plane plus the polynomial coefficients of windows of rearranged chromatic values, which are then quantized. The simplicity of the method produces a fast and simple scheme for colour image and video compression, with excellent results.

Influenza viruses production: Evaluation of a novel avian cell line DuckCelt®-T17.

PubMed

Petiot, Emma; Proust, Anaïs; Traversier, Aurélien; Durous, Laurent; Dappozze, Frédéric; Gras, Marianne; Guillard, Chantal; Balloul, Jean-Marc; Rosa-Calatrava, Manuel

2018-05-24

The influenza vaccine manufacturing industry is looking for production cell lines that are easily scalable, highly permissive to multiple viruses, and more effective in term of viral productivity. One critical characteristic of such cell lines is their ability to grow in suspension, in serum free conditions and at high cell densities. Influenza virus causing severe epidemics both in human and animals is an important threat to world healthcare. The repetitive apparition of influenza pandemic outbreaks in the last 20years explains that manufacturing sector is still looking for more effective production processes to replace/supplement embryonated egg-based process. Cell-based production strategy, with a focus on avian cell lines, is one of the promising solutions. Three avian cell lines, namely duck EB66®cells (Valneva), duck AGE.CR® cells (Probiogen) and quail QOR/2E11 cells (Baxter), are now competing with traditional mammalian cell platforms (Vero and MDCK cells) used for influenza vaccine productions and are currently at advance stage of commercial development for the manufacture of influenza vaccines. The DuckCelt®-T17 cell line presented in this work is a novel avian cell line developed by Transgene. This cell line was generated from primary embryo duck cells with the constitutive expression of the duck telomerase reverse transcriptase (dTERT). The DuckCelt®-T17 cells were able to grow in batch suspension cultures and serum-free conditions up to 6.5×10 6 cell/ml and were easily scaled from 10ml up to 3l bioreactor. In the present study, DuckCelt®-T17 cell line was tested for its abilities to produce various human, avian and porcine influenza strains. Most of the viral strains were produced at significant infectious titers (>5.8 log TCID50/ml) with optimization of the infection conditions. Human strains H1N1 and H3N2, as well as all the avian strains tested (H5N2, H7N1, H3N8, H11N9, H12N5) were the most efficiently produced with highest titre reached of 9.05 log TCID50/ml for A/Panama/2007/99 influenza H3N2. Porcine strains were also greatly rescued with titres from 4 to 7 log TCID50/ml depending of the subtypes. Interestingly, viral kinetics showed maximal titers reached at 24h post-infection for most of the strains, allowing early harvest time (Time Of Harvest: TOH). The B strains present specific production kinetics with a delay of 24h before reaching the maximal viral particle release. Process optimization on H1N1 2009 human pandemic strain allowed identifying best operating conditions for production (MOI, trypsin concentration, cell density at infection) allowing improving the production level by 2 log. Our results suggest that the DuckCelt®-T17 cell line is a very promising platform for industrial production of influenza viruses and particularly for avian viral strains. Copyright © 2017 Elsevier Ltd. All rights reserved.

Climate and the weight/height relationship in sub-Saharan Africa.

PubMed

Hiernaux, J; Rudan, P; Brambati, A

1975-01-01

25 populations of the rain forest and 44 of the open country, all descended from the West-Central African stock which lived in the latter biome, are compared for body weight and height. On a log weight/height diagram, the 69 populations cluster along a straight line which intersects the lines of equal body weight/surface ratio: the shorter the body size, the lower the ratio tends to be. The rain forest populations are concentrated in the lower part of the bivariate distribution. The shortest one, the Mbuti Pygmies, has a very low ratio despite a relatively heavy weight. The shorter stature of the rain forest populations seems to be largely genetic in origin; it probably results from selective pressure exerted by the thermal stres in this hot and wet biome where sweating is of low thermolytic efficiency. The amount of reduction of adult stature depends for a large part on the number of generations spent in the forest by the population. Line A (in figure 1) is similar to a growth trend. The 69 populations differ genetically by the target that growth has to reach on a common log weight/height trend line. They achieve this differentiation through different speeds of growth.

77 FR 20638 - Ashish Macwan: Debarment Order

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-05

... Manufacturing Practices; violating Standards of Procedure by failing to properly investigate, log, and archive... inaccurate data and records to obtain FDA approval to market new product lines. In furtherance of the...

Warm absorbers in X-rays (WAX), a comprehensive high-resolution grating spectral study of a sample of Seyfert galaxies - I. A global view and frequency of occurrence of warm absorbers.

NASA Astrophysics Data System (ADS)

Laha, Sibasish; Guainazzi, Matteo; Dewangan, Gulab C.; Chakravorty, Susmita; Kembhavi, Ajit K.

2014-07-01

We present results from a homogeneous analysis of the broad-band 0.3-10 keV CCD resolution as well as of the soft X-ray high-resolution grating spectra of a hard X-ray flux-limited sample of 26 Seyfert galaxies observed with XMM-Newton. Our goal is to characterize warm absorbers (WAs) along the line of sight to the active nucleus. We significantly detect WAs in 65 per cent of the sample sources. Our results are consistent with WAs being present in at least half of the Seyfert galaxies in the nearby Universe, in agreement with previous estimates. We find a gap in the distribution of the ionization parameter in the range 0.5 < log ξ < 1.5 which we interpret as a thermally unstable region for WA clouds. This may indicate that the WA flow is probably constituted by a clumpy distribution of discrete clouds rather than a continuous medium. The distribution of the WA column densities for the sources with broad Fe Kα lines are similar to those sources which do not have broadened emission lines. Therefore, the detected broad Fe Kα emission lines are bona fide and not artefacts of ionized absorption in the soft X-rays. The WA parameters show no correlation among themselves, with the exception of the ionization parameter versus column density. The shallow slope of the log ξ versus log vout linear regression (0.12 ± 0.03) is inconsistent with the scaling laws predicted by radiation or magnetohydrodynamic-driven winds. Our results also suggest that WA and ultra fast outflows do not represent extreme manifestation of the same astrophysical system.

The Mass-Metallicity Relation with the Direct Method on Stacked Spectra of SDSS Galaxies

NASA Astrophysics Data System (ADS)

Andrews, Brett H.; Martini, Paul

2013-03-01

The relation between galaxy stellar mass and gas-phase metallicity is a sensitive diagnostic of the main processes that drive galaxy evolution, namely cosmological gas inflow, metal production in stars, and gas outflow via galactic winds. We employed the direct method to measure the metallicities of ~200,000 star-forming galaxies from the Sloan Digital Sky Survey that were stacked in bins of (1) stellar mass and (2) both stellar mass and star formation rate (SFR) to significantly enhance the signal-to-noise ratio of the weak [O III] λ4363 and [O II] λλ7320, 7330 auroral lines required to apply the direct method. These metallicity measurements span three decades in stellar mass from log(M sstarf/M ⊙) = 7.4-10.5, which allows the direct method mass-metallicity relation to simultaneously capture the high-mass turnover and extend a full decade lower in mass than previous studies that employed more uncertain strong line methods. The direct method mass-metallicity relation rises steeply at low mass (O/H vprop M sstarf 1/2) until it turns over at log(M sstarf/M ⊙) = 8.9 and asymptotes to 12 + log(O/H) = 8.8 at high mass. The direct method mass-metallicity relation has a steeper slope, a lower turnover mass, and a factor of two to three greater dependence on SFR than strong line mass-metallicity relations. Furthermore, the SFR-dependence appears monotonic with stellar mass, unlike strong line mass-metallicity relations. We also measure the N/O abundance ratio, an important tracer of star formation history, and find the clear signature of primary and secondary nitrogen enrichment. N/O correlates tightly with oxygen abundance, and even more so with stellar mass.

Visual Performance on the Small Letter Contrast Test: Effects of Aging, Low Luminance and Refractive Error

DTIC Science & Technology

2000-08-01

luminance performance and aviation, many aviators develop ametropias refractive error having comparable effects on during their careers. We were... statistically (0.04 logMAR, the non-aviator group. Separate investigators at p=0.01), but not clinically significant (ə/2 line different research facilities... statistically significant (0.11 ± 0.1 logCS, t=4.0, sensitivity on the SLCT decreased for the aviator pɘ.001), yet there is significant overlap group at a

Compressive Properties of Extruded Polytetrafluoroethylene

DTIC Science & Technology

2007-07-01

against equivalent temperature ( Tmap ) at a single strain rate (3map). This is a pragmatic, empirically based line- arization and extension to large strains...one of the strain rates that was used in the experimental program, and in this case two rates were used: 0.1 s1 and 3200 s1. The value Tmap , is...defined as Tmap ¼ Texp þA log _3map log _3exp ð11Þ where the subscript exp indicates the experimental values of strain rate and temperature. A

Predicting through-focus visual acuity with the eye's natural aberrations.

PubMed

Kingston, Amanda C; Cox, Ian G

2013-10-01

To develop a predictive optical modeling process that utilizes individual computer eye models along with a novel through-focus image quality metric. Individual eye models were implemented in optical design software (Zemax, Bellevue, WA) based on evaluation of ocular aberrations, pupil diameter, visual acuity, and accommodative response of 90 subjects (180 eyes; 24-63 years of age). Monocular high-contrast minimum angle of resolution (logMAR) acuity was assessed at 6 m, 2 m, 1 m, 67 cm, 50 cm, 40 cm, 33 cm, 28 cm, and 25 cm. While the subject fixated on the lowest readable line of acuity, total ocular aberrations and pupil diameter were measured three times each using the Complete Ophthalmic Analysis System (COAS HD VR) at each distance. A subset of 64 mature presbyopic eyes was used to predict the clinical logMAR acuity performance of five novel multifocal contact lens designs. To validate predictability of the design process, designs were manufactured and tested clinically on a population of 24 mature presbyopes (having at least +1.50 D spectacle add at 40 cm). Seven object distances were used in the validation study (6 m, 2 m, 1 m, 67 cm, 50 cm, 40 cm, and 25 cm) to measure monocular high-contrast logMAR acuity. Baseline clinical through-focus logMAR was shown to correlate highly (R² = 0.85) with predicted logMAR from individual eye models. At all object distances, each of the five multifocal lenses showed less than one line difference, on average, between predicted and clinical normalized logMAR acuity. Correlation showed R² between 0.90 and 0.97 for all multifocal designs. Computer-based models that account for patient's aberrations, pupil diameter changes, and accommodative amplitude can be used to predict the performance of contact lens designs. With this high correlation (R² ≥ 0.90) and high level of predictability, more design options can be explored in the computer to optimize performance before a lens is manufactured and tested clinically.

Impact of visual acuity on developing literacy at age 4-5 years: a cohort-nested cross-sectional study.

PubMed

Bruce, Alison; Fairley, Lesley; Chambers, Bette; Wright, John; Sheldon, Trevor A

2016-02-16

To estimate the prevalence of poor vision in children aged 4-5 years and determine the impact of visual acuity on literacy. Cross-sectional study linking clinical, epidemiological and education data. Schools located in the city of Bradford, UK. Prevalence was determined for 11,186 children participating in the Bradford school vision screening programme. Data linkage was undertaken for 5836 Born in Bradford (BiB) birth cohort study children participating both in the Bradford vision screening programme and the BiB Starting Schools Programme. 2025 children had complete data and were included in the multivariable analyses. Visual acuity was measured using a logMAR Crowded Test (higher scores=poorer visual acuity). Literacy measured by Woodcock Reading Mastery Tests-Revised (WRMT-R) subtest: letter identification (standardised). The mean (SD) presenting visual acuity was 0.14 (0.09) logMAR (range 0.0-1.0). 9% of children had a presenting visual acuity worse than 0.2logMAR (failed vision screening), 4% worse than 0.3logMAR (poor visual acuity) and 2% worse than 0.4logMAR (visually impaired). Unadjusted analysis showed that the literacy score was associated with presenting visual acuity, reducing by 2.4 points for every 1 line (0.10logMAR) reduction in vision (95% CI -3.0 to -1.9). The association of presenting visual acuity with the literacy score remained significant after adjustment for demographic and socioeconomic factors reducing by 1.7 points (95% CI -2.2 to -1.1) for every 1 line reduction in vision. Prevalence of decreased visual acuity was high compared with other population-based studies. Decreased visual acuity at school entry is associated with reduced literacy. This may have important implications for the children's future educational, health and social outcomes. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beiersdorfer, P.; Hell, N.; Lepson, J. K.

We identified a previously unassigned pair of lines between 169 and 170 Å in the coronae of cool stars. Here, we attribute these lines to Fe xiv and show that their intensity ratio is sensitive to the electron density. Using observations taken with the Low Energy Transmission Grating Spectrometer of the Chandra X-ray Observatory we infer a density of log (n e/cm -3) = 10.2 ± 0.7 and 10.3 ± 0.8 from the newly identified line pair in the coronae of Procyon and α Cen A, respectively.

Analysis of the Non-LTE Lithium Abundance for a Large Sample of F-, G-, and K-Giants and Supergiants

NASA Astrophysics Data System (ADS)

Lyubimkov, L. S.; Petrov, D. V.

2017-09-01

A five-dimensional interpolation method and corresponding computer program are developed for using published calculations to determine the non-LTE correction ΔNLTE to the lithium abundance logɛ(Li) derived from the Li I 6707.8 Å line. The ΔNLTE value is determined from the following five parameters: the effective temperature Teff, the acceleration of gravity logg, the metallicity index [Fe/H], the microturbulent velocity Vt, and the LTE Li abundance logɛ(Li) . The program is used to calculate values of ΔNLTE and the non-LTE Li abundance for 91 single bright giants from the list of Lebre, et al. By combining these results with data for 55 stars from the previous paper, we obtain the non-LTE values of logɛ(Li) for 146 FGK-giants and supergiants. We confirm that, because of the absence of the Li line in the spectra of most of these stars, it is only possible to estimate for them an upper bound for the Li abundance. A large spread is confirmed in logɛ(Li) for stars with masses M ≤ 6M ⦿ . A comparison of these results with model calculations of stars confirms the unique sensitivity of the lithium abundance to the initial rotation velocity V0. We discuss the giants and supergiants with lithium abundances logɛ(Li) = 1.4 ± 0.3 , which could have a rotational velocity V0=0 km/s and have already undergone deep convective mixing. Li-rich giants with lithium abundances logɛ(Li) ≥ 2 and nearly up to the initial value of logɛ(Li) = 3.2 ± 0.1 are examined. It is shown that the fraction of Li-rich giants with V0 ≈ 0 - 50 km/s is consistent with current evolutionary models. The other stars of this type, as well as all of the "super Li-rich" giants, for which the standard theory is untenable, can be explained by invoking the hypothesis of recent lithium synthesis in the star or an alternative hypothesis according to which a giant planet is engulfed by the star.

CO Tully-Fisher relation of star-forming galaxies at z = 0.05 - 0.3

NASA Astrophysics Data System (ADS)

Topal, Selçuk; Bureau, Martin; Tiley, Alfred L.; Davis, Timothy A.; Torii, Kazufumi

2018-06-01

The Tully-Fisher relation (TFR) is an empirical relation between galaxy luminosity and rotation velocity. We present here the first TFR of galaxies beyond the local Universe that uses carbon monoxide (CO) as the kinematic tracer. Our final sample includes 25 isolated, non-interacting star-forming galaxies with double-horned or boxy CO integrated line profiles located at redshifts z ≤ 0.3, drawn from a larger ensemble of 67 detected objects. The best reverse Ks-band, stellar mass and baryonic mass CO TFRs are respectively M_{Ks}=(-8.4± 2.9)[log (W_{50}/km s^{-1}/sin {i})-2.5] + (-23.5± 0.5), log (M_{\\star } / M_⊙ )=(5.2± 3.0)[log (W_{50}/km s^{-1}/sin {i})-2.5] + (10.1± 0.5) and log (M_b / M_⊙ )=(4.9± 2.8)[log (W_{50}/km s^{-1}/sin {i})-2.5] + (10.2± 0.5), where M_{Ks} is the total absolute Ks-band magnitude of the objects, M⋆ and Mb their total stellar and baryonic masses, and W50 the width of their line profile at 50% of the maximum. Dividing the sample into different redshift bins and comparing to the TFRs of a sample of local (z = 0) star-forming galaxies from the literature, we find no significant evolution in the slopes and zero-points of the TFRs since z ≈ 0.3, this in either luminosity or mass. In agreement with a growing number of CO TFR studies of nearby galaxies, we more generally find that CO is a suitable and attractive alternative to neutral hydrogen (H I). Our work thus provides an important benchmark for future higher redshift CO TFR studies.

Microfluidic sorting and multimodal typing of cancer cells in self-assembled magnetic arrays.

PubMed

Saliba, Antoine-Emmanuel; Saias, Laure; Psychari, Eleni; Minc, Nicolas; Simon, Damien; Bidard, François-Clément; Mathiot, Claire; Pierga, Jean-Yves; Fraisier, Vincent; Salamero, Jean; Saada, Véronique; Farace, Françoise; Vielh, Philippe; Malaquin, Laurent; Viovy, Jean-Louis

2010-08-17

We propose a unique method for cell sorting, "Ephesia," using columns of biofunctionalized superparamagnetic beads self-assembled in a microfluidic channel onto an array of magnetic traps prepared by microcontact printing. It combines the advantages of microfluidic cell sorting, notably the application of a well controlled, flow-activated interaction between cells and beads, and those of immunomagnetic sorting, notably the use of batch-prepared, well characterized antibody-bearing beads. On cell lines mixtures, we demonstrated a capture yield better than 94%, and the possibility to cultivate in situ the captured cells. A second series of experiments involved clinical samples--blood, pleural effusion, and fine needle aspirates--issued from healthy donors and patients with B-cell hematological malignant tumors (leukemia and lymphoma). The immunophenotype and morphology of B-lymphocytes were analyzed directly in the microfluidic chamber, and compared with conventional flow cytometry and visual cytology data, in a blind test. Immunophenotyping results using Ephesia were fully consistent with those obtained by flow cytometry. We obtained in situ high resolution confocal three-dimensional images of the cell nuclei, showing intranuclear details consistent with conventional cytological staining. Ephesia thus provides a powerful approach to cell capture and typing allowing fully automated high resolution and quantitative immunophenotyping and morphological analysis. It requires at least 10 times smaller sample volume and cell numbers than cytometry, potentially increasing the range of indications and the success rate of microbiopsy-based diagnosis, and reducing analysis time and cost.

Microfluidic sorting and multimodal typing of cancer cells in self-assembled magnetic arrays

PubMed Central

Saliba, Antoine-Emmanuel; Saias, Laure; Psychari, Eleni; Minc, Nicolas; Simon, Damien; Bidard, François-Clément; Mathiot, Claire; Pierga, Jean-Yves; Fraisier, Vincent; Salamero, Jean; Saada, Véronique; Farace, Françoise; Vielh, Philippe; Malaquin, Laurent; Viovy, Jean-Louis

2010-01-01

We propose a unique method for cell sorting, “Ephesia,” using columns of biofunctionalized superparamagnetic beads self-assembled in a microfluidic channel onto an array of magnetic traps prepared by microcontact printing. It combines the advantages of microfluidic cell sorting, notably the application of a well controlled, flow-activated interaction between cells and beads, and those of immunomagnetic sorting, notably the use of batch-prepared, well characterized antibody-bearing beads. On cell lines mixtures, we demonstrated a capture yield better than 94%, and the possibility to cultivate in situ the captured cells. A second series of experiments involved clinical samples—blood, pleural effusion, and fine needle aspirates— issued from healthy donors and patients with B-cell hematological malignant tumors (leukemia and lymphoma). The immunophenotype and morphology of B-lymphocytes were analyzed directly in the microfluidic chamber, and compared with conventional flow cytometry and visual cytology data, in a blind test. Immunophenotyping results using Ephesia were fully consistent with those obtained by flow cytometry. We obtained in situ high resolution confocal three-dimensional images of the cell nuclei, showing intranuclear details consistent with conventional cytological staining. Ephesia thus provides a powerful approach to cell capture and typing allowing fully automated high resolution and quantitative immunophenotyping and morphological analysis. It requires at least 10 times smaller sample volume and cell numbers than cytometry, potentially increasing the range of indications and the success rate of microbiopsy-based diagnosis, and reducing analysis time and cost. PMID:20679245

Transposon-mediated generation of BCR-ABL1-expressing transgenic cell lines for unbiased sensitivity testing of tyrosine kinase inhibitors

PubMed Central

Berkowitsch, Bettina; Koenig, Margit; Haas, Oskar A.; Hoermann, Gregor; Valent, Peter; Lion, Thomas

2016-01-01

Point mutations in the ABL1 kinase domain are an important mechanism of resistance to tyrosine kinase inhibitors (TKI) in BCR-ABL1-positive and, as recently shown, BCR-ABL1-like leukemias. The cell line Ba/F3 lentivirally transduced with mutant BCR-ABL1 constructs is widely used for in vitro sensitivity testing and response prediction to tyrosine kinase inhibitors. The transposon-based Sleeping Beauty system presented offers several advantages over lentiviral transduction including the absence of biosafety issues, faster generation of transgenic cell lines, and greater efficacy in introducing large gene constructs. Nevertheless, both methods can mediate multiple insertions in the genome. Here we show that multiple BCR-ABL1 insertions result in elevated IC50 levels for individual TKIs, thus overestimating the actual resistance of mutant subclones. We have therefore established flow-sorting-based fractionation of BCR-ABL1-transformed Ba/F3 cells facilitating efficient enrichment of cells carrying single-site insertions, as demonstrated by FISH-analysis. Fractions of unselected Ba/F3 cells not only showed a greater number of BCR-ABL1 hybridization signals, but also revealed higher IC50 values for the TKIs tested. The data presented highlight the need to carefully select transfected cells by flow-sorting, and to control the insertion numbers by FISH and real-time PCR to permit unbiased in vitro testing of drug resistance. PMID:27801667

The Mid-Canada Radar Line and First Nations' people of the James Bay region, Canada: an evaluation using log-linear contingency modelling to analyze organochlorine frequency data.

PubMed

Tsuji, Leonard J S; Wainman, Bruce C; Martin, Ian D; Weber, Jean-Philippe; Sutherland, Celine; Elliott, J Richard; Nieboer, Evert

2005-09-01

Abandoned radar line stations in the North American arctic and sub-arctic regions are point sources of contamination, especially for PCBs. Few data exist with respect to human body burden of organochlorines (OCs) in residents of communities located in close proximity to these radar line sites. We compared plasma OC concentration (unadjusted for total lipids) frequency distribution data using log-linear contingency modelling for Fort Albany First Nation, the site of an abandoned Mid-Canada Radar Line station, and two comparison populations (the neighbouring community of Kashechewan First Nation without such a radar installation, and Hamilton, a city in southern Ontario, Canada). This type of analysis is important as it allows for an initial investigation of contaminant data without imputing any values. The two-state log-linear model (employing both non-detectable and detectable concentration frequencies and applicable to PCB congeners 28 and 105 and cis-nonachlor) and the four-state log-linear model (using quartile concentration frequencies for Aroclor 1260, PCB congeners [99,118,138,153,156,170,180,183,187], beta-HCH, p,p'-DDT +p,p'-DDE, HCB, mirex, oxychlordane, and trans-nonachlor) revealed that the effects of subject gender were inconsequential. Significant differences (p < 0.05) between the groups examined were attributable to the effect of location on the frequency of detection of OCs or on their differential distribution among the concentration quartiles. In general, people from Hamilton had higher frequencies of non-detections and of concentrations in the first quartile (p < 0.05) for most OCs compared to people from Fort Albany and Kashechewan (who consume a traditional diet of wild meats that does not include marine mammals). An unexpected finding was that, for Kashechewan males, the frequency of many OCs was significantly higher (p < 0.05) in the 4th concentration quartile than that predicted by the four-state log-linear model, but significantly lower than expected in the 1st quartile for beta-HCH. The levels of PCBs found for women in Fort Albany and Kashechewan were greater than those reported for Dene (First Nation people) and Métis (mixed heritage) of the western Northwest Territories (NWT) who did not consume marine mammals, and for Inuit living in the central NWT (occasional consumers of marine mammals). Moreover, the levels of total p,p'-DDT were greater for Fort Albany and Kashechewan women compared to these same aboriginal groups.

50 CFR 600.507 - Recordkeeping.

Code of Federal Regulations, 2010 CFR

2010-10-01

... indelible ink, with corrections to be accomplished by lining out and rewriting, rather than erasure. (i) Alternative log formats. As an alternative to the use of the specific formats provided, a Nation may submit a...

50 CFR 600.507 - Recordkeeping.

Code of Federal Regulations, 2011 CFR

2011-10-01

... indelible ink, with corrections to be accomplished by lining out and rewriting, rather than erasure. (i) Alternative log formats. As an alternative to the use of the specific formats provided, a Nation may submit a...

JPRS Report China

DTIC Science & Technology

1988-10-19

greater or lesser influence on comtemporary political life in terms of the system, concepts, and habits. In particular, the feudal patriarchal clan...factories to close, stop production, merge, or switch to another line of business ; thereby sorting out the eco- nomic relations if only temporarily... business , they should not be contracted. It follows that the present tax system should be reformed. We should abolish the income adjustment tax, cut

Image Understanding Research

DTIC Science & Technology

1983-10-19

knowledge -based symbolic reasoning, it nonetheless remains de- pendent on the lower levels of iconic processing for its raw information . Both sorts of...priori knowledge of where any particular line might go, and therefore no information regarding the extent of memory access required for the local...IC FILE COPY ,. c 4/t/7 ISG Report 104 IMAGE UNDERSTANDING RESEARCH Final Technical Report Covering Research Activity During the Period October 1

Evaluation of AIS-2 (1986) data over hydrothermally altered granitoid rocks of the Singatse Range (Yerington) Nevada and comparison with 1985 AIS-1 data

NASA Technical Reports Server (NTRS)

Lyon, R. J. P.

1987-01-01

The Airborne Imaging Spectrometer-2 (AIS-2) flights along 2 subparallel lines (bearing 013) were designed to traverse 3 major rock assemblages - the Triassic sedimentary sequence; the granitoid rocks of the Yerington batholith and the Tertiary ignimbritic ash flow and ash fall tuffs. The first 2 sites are hydrothermally altered to a quartz-sericite-tourmaline mineralogy. The first AIS-2 data set showed numerous line dropouts and a considerable number of randomly distributed dark pixels. A second decommutation reduced the dropout essentially to near zero and the dark pixels by about 75 percent. Vertical striping was removed by histogram matching, column by column. A log residual spectrum was calculated which showed the departure of a 2 x 2 pixel area from the spatially and spectrally averaged scene. A 1:1 correlation was found with the log residual AIS-2 data and a large open pit area of gypsum. An area with known sericite agreed with the overflight data, and an area known to be free of any significant amount of O-H bearing materials showed no evidence of any in the AIS-2 log residuals.

Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription

PubMed Central

Mesner, Larry D.; Valsakumar, Veena; Karnani, Neerja; Dutta, Anindya; Hamlin, Joyce L.; Bekiranov, Stefan

2011-01-01

We have used a novel bubble-trapping procedure to construct nearly pure and comprehensive human origin libraries from early S- and log-phase HeLa cells, and from log-phase GM06990, a karyotypically normal lymphoblastoid cell line. When hybridized to ENCODE tiling arrays, these libraries illuminated 15.3%, 16.4%, and 21.8% of the genome in the ENCODE regions, respectively. Approximately half of the origin fragments cluster into zones, and their signals are generally higher than those of isolated fragments. Interestingly, initiation events are distributed about equally between genic and intergenic template sequences. While only 13.2% and 14.0% of genes within the ENCODE regions are actually transcribed in HeLa and GM06990 cells, 54.5% and 25.6% of zonal origin fragments overlap transcribed genes, most with activating chromatin marks in their promoters. Our data suggest that cell synchronization activates a significant number of inchoate origins. In addition, HeLa and GM06990 cells activate remarkably different origin populations. Finally, there is only moderate concordance between the log-phase HeLa bubble map and published maps of small nascent strands for this cell line. PMID:21173031

Estimation of Reineke and Volume-Based Maximum Size-Density Lines For Shortleaf Pine

Treesearch

Thomas B. Lynch; Robert F. Wittwer; Douglas J. Stevenson

2004-01-01

Maximum size-density relationships for Reineke's stand density index as well as for a relationship based on average tree volume were fitted to data from more than a decade of annual remeasurements of plots in unthinned naturally occurring shor tleaf pine in southeaster n Oklahoma. Reineke's stand density index is based on a maximum line of the form log(N) = a...

Confronting the Gaia and NLTE spectroscopic parallaxes for the FGK stars

NASA Astrophysics Data System (ADS)

Sitnova, Tatyana; Mashonkina, Lyudmila; Pakhomov, Yury

2018-04-01

The understanding of the chemical evolution of the Galaxy relies on the stellar chemical composition. Accurate atmospheric parameters is a prerequisite of determination of accurate chemical abundances. For late type stars with known distance, surface gravity (log g) can be calculated from well-known relation between stellar mass, T eff, and absolute bolometric magnitude. This method weakly depends on model atmospheres, and provides reliable log g. However, accurate distances are available for limited number of stars. Another way to determine log g for cool stars is based on ionisation equilibrium, i.e. consistent abundances from lines of neutral and ionised species. In this study we determine atmospheric parameters moving step-by-step from well-studied nearby dwarfs to ultra-metal poor (UMP) giants. In each sample, we select stars with the most reliable T eff based on photometry and the distance-based log g, and compare with spectroscopic gravity calculated taking into account deviations from local thermodinamic equilibrium (LTE). After that, we apply spectroscopic method of log g determination to other stars of the sample with unknown distances.

A line parameter list for the nu2 and nu4 bands of /C-12/H4 and /C-13/H4, extended to J-prime = 25 and its application to planetary atmospheres

NASA Technical Reports Server (NTRS)

Orton, G. S.; Robiette, A. G.

1980-01-01

Line parameters (transition frequencies, line strengths, line widths, ground state energies and quantum identifications) for the nu2 and nu4 bands of (C-12)H4 and (C-13)H4 have been calculated for J-prime equal to or less than 25 using the simultaneous coupled fitting procedure of Gray and Robiette. Molecular constants for the nu2 band of (C-13)H4 were estimated from isotopic shifts from (C-12)H4 values. Agreement with laboratory spectra, where available, is always well within 1 kayser over the entire spectral range covered by the list. The most serious problem in comparison with laboratory data is the omission of lines belonging to 'hot' bands in this spectral region. This list is valuable in remote sensing problems for sorting out lines of trace species from weak methane lines and for determining the atmospheric opacity in relatively transparent spectral regions. Applications of the parameter list are demonstrated for remote sounding of the Jovian atmosphere.

A synchronous serial bus for multidimensional array acoustic logging tool

NASA Astrophysics Data System (ADS)

Men, Baiyong; Ju, Xiaodong; Lu, Junqiang; Qiao, Wenxiao

2016-12-01

In high-temperature and spatial borehole applications, a distributed structure is employed in a multidimensional array acoustic logging tool (MDALT) based on a phased array technique for electronic systems. However, new challenges, such as synchronous multichannel data acquisition, multinode real-time control and bulk data transmission in a limited interval, have emerged. To address these challenges, we developed a synchronous serial bus (SSB) in this study. SSB works in a half-duplex mode via a master-slave architecture. It also consists of a single master, several slaves, a differential clock line and a differential data line. The clock line is simplex, whereas the data line is half-duplex and synchronous to the clock line. A reliable communication between the master and the slaves with real-time adjustment of synchronisation is achieved by rationally designing the frame format and protocol of communication and by introducing a scramble code and a Hamming error-correcting code. The control logic of the master and the slaves is realized in field programmable gate array (FPGA) or complex programmable logic device (CPLD). The clock speed of SSB is 10 MHz, the effective data rate of the bulk data transmission is over 99%, and the synchronous errors amongst the slaves are less than 10 ns. Room-temperature test, high-temperature test (175 °C) and field test demonstrate that the proposed SSB is qualified for MDALT.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lawler, J. E.; Sneden, C.; Cowan, J. J., E-mail: jelawler@wisc.edu, E-mail: chris@verdi.as.utexas.edu, E-mail: jjcowan1@ou.edu

New emission branching fraction measurements for 898 lines of the first spectrum of cobalt (Co i) are determined from hollow cathode lamp spectra recorded with the National Solar Observatory 1 m Fourier transform spectrometer on Kitt Peak, AZ and a high-resolution echelle spectrometer. Published radiative lifetimes from laser induced fluorescence measurements are combined with the branching fractions to determine accurate absolute atomic transition probabilities for the 898 lines. Hyperfine structure (hfs) constants for levels of neutral Co in the literature are surveyed and selected values are used to generate complete hfs component patterns for 195 transitions of Co i. Thesemore » new laboratory data are applied to determine the Co abundance in the Sun and metal-poor star HD 84937, yielding log ϵ(Co) = 4.955 ± 0.007 (σ = 0.059) based on 82 Co i lines and log ϵ(Co) = 2.785 ± 0.008 (σ = 0.065) based on 66 Co i lines, respectively. A Saha or ionization balance test on the photosphere of HD 84937 is performed using 16 UV lines of Co ii, and good agreement is found with the Co i result in this metal-poor ([Fe i/H] = −2.32, [Fe ii/H] = −2.32) dwarf star. The resulting value of [Co/Fe] = +0.14 supports a rise of Co/Fe at low metallicity that has been suggested in other studies.« less

IMPROVED V II log(gf) VALUES, HYPERFINE STRUCTURE CONSTANTS, AND ABUNDANCE DETERMINATIONS IN THE PHOTOSPHERES OF THE SUN AND METAL-POOR STAR HD 84937

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wood, M. P.; Lawler, J. E.; Den Hartog, E. A.

2014-10-01

New experimental absolute atomic transition probabilities are reported for 203 lines of V II. Branching fractions are measured from spectra recorded using a Fourier transform spectrometer and an echelle spectrometer. The branching fractions are normalized with radiative lifetime measurements to determine the new transition probabilities. Generally good agreement is found between this work and previously reported V II transition probabilities. Two spectrometers, independent radiometric calibration methods, and independent data analysis routines enable a reduction in systematic uncertainties, in particular those due to optical depth errors. In addition, new hyperfine structure constants are measured for selected levels by least squares fittingmore » line profiles in the FTS spectra. The new V II data are applied to high resolution visible and UV spectra of the Sun and metal-poor star HD 84937 to determine new, more accurate V abundances. Lines covering a range of wavelength and excitation potential are used to search for non-LTE effects. Very good agreement is found between our new solar photospheric V abundance, log ε(V) = 3.95 from 15 V II lines, and the solar-system meteoritic value. In HD 84937, we derive [V/H] = –2.08 from 68 lines, leading to a value of [V/Fe] = 0.24.« less

Automated nodule location and size estimation using a multi-scale Laplacian of Gaussian filtering approach.

PubMed

Jirapatnakul, Artit C; Fotin, Sergei V; Reeves, Anthony P; Biancardi, Alberto M; Yankelevitz, David F; Henschke, Claudia I

2009-01-01

Estimation of nodule location and size is an important pre-processing step in some nodule segmentation algorithms to determine the size and location of the region of interest. Ideally, such estimation methods will consistently find the same nodule location regardless of where the the seed point (provided either manually or by a nodule detection algorithm) is placed relative to the "true" center of the nodule, and the size should be a reasonable estimate of the true nodule size. We developed a method that estimates nodule location and size using multi-scale Laplacian of Gaussian (LoG) filtering. Nodule candidates near a given seed point are found by searching for blob-like regions with high filter response. The candidates are then pruned according to filter response and location, and the remaining candidates are sorted by size and the largest candidate selected. This method was compared to a previously published template-based method. The methods were evaluated on the basis of stability of the estimated nodule location to changes in the initial seed point and how well the size estimates agreed with volumes determined by a semi-automated nodule segmentation method. The LoG method exhibited better stability to changes in the seed point, with 93% of nodules having the same estimated location even when the seed point was altered, compared to only 52% of nodules for the template-based method. Both methods also showed good agreement with sizes determined by a nodule segmentation method, with an average relative size difference of 5% and -5% for the LoG and template-based methods respectively.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collins, Benjamin S.

The Futility package contains the following: 1) Definition of the size of integers and real numbers; 2) A generic Unit test harness; 3) Definitions for some basic extensions to the Fortran language: arbitrary length strings, a parameter list construct, exception handlers, command line processor, timers; 4) Geometry definitions: point, line, plane, box, cylinder, polyhedron; 5) File wrapper functions: standard Fortran input/output files, Fortran binary files, HDF5 files; 6) Parallel wrapper functions: MPI, and Open MP abstraction layers, partitioning algorithms; 7) Math utilities: BLAS, Matrix and Vector definitions, Linear Solver methods and wrappers for other TPLs (PETSC, MKL, etc), preconditioner classes;more » 8) Misc: random number generator, water saturation properties, sorting algorithms.« less

Generation of a human CDX2 knock-in reporter iPSC line (MHHi007-A-1) to model human trophoblast differentiation.

PubMed

Malysheva, Svitlana V; Wunderlich, Stephanie; Haase, Alexandra; Göhring, Gudrun; Martin, Ulrich; Merkert, Sylvia

2018-05-19

Caudal-type homeobox 2 (CDX2) transcription factor is an important marker for early trophoblast lineages and intestinal epithelium. Due to its nuclear expression the immunostaining and sorting of viable CDX2 pos cells is not possible. In this paper we report the generation and describe key characteristics of a CDX2 Venus knock-in reporter hiPSC-cell line (MHHi007-A-1) which can serve as an in vitro tool to study human trophoblast and intestinal differentiation. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

Plasmodium yoelii yoelii 17XNL constitutively expressing GFP throughout the life cycle.

PubMed

Ono, Takeshi; Tadakuma, Takushi; Rodriguez, Ana

2007-03-01

Plasmodium yoelii is a rodent parasite commonly used as a model to study malaria infection. It is the preferred model parasite for liver-stage immunological studies and is also widely used to study hepatocyte, erythrocyte and mosquito infection. We have generated a P. yoelii yoelii 17XNL line that is stably transfected with the green fluorescent protein (gfp) gene. This parasite line constitutively expresses high levels of GFP during the complete parasite life cycle including liver, blood and mosquito stages. These fluorescent parasites can be used in combination with fluorescence activated cell sorting or live microscopy for a wide range of experimental applications.

Improved method estimating bioconcentration/bioaccumulation factor from octanol/water partition coefficient

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meylan, W.M.; Howard, P.H.; Aronson, D.

1999-04-01

A compound`s bioconcentration factor (BDF) is the most commonly used indicator of its tendency to accumulate in aquatic organisms from the surrounding medium. Because it is expensive to measure, the BCF is generally estimated from the octanol/water partition coefficient (K{sub ow}), but currently used regression equations were developed from small data sets that do not adequately represent the wide range of chemical substances now subject to review. To develop and improved method, the authors collected BCF data in a file that contained information on measured BCFs and other key experimental details for 694 chemicals. Log BCF was then regressed againstmore » log K{sub ow} and chemicals with significant deviations from the line of best fit were analyzed by chemical structure. The resulting algorithm classifies a substance as either nonionic or ionic, the latter group including carboxylic acids, sulfonic acids and their salts, and quaternary N compounds. Log BCF for nonionics is estimated from log K{sub ow} and a series of correction factors if applicable; different equations apply for log K{sub ow} 1.0 to 7.0 and >7.0. For ionics, chemicals are categorized by log K{sub ow} and a log BCF in the range 0.5 to 1.75 is assigned. Organometallics, nonionics with long alkyl chains, and aromatic azo compounds receive special treatment. The correlation coefficient and mean error for log BCF indicate that the new method is a significantly better fit to existing data than other methods.« less

PBMC are as good a source of tumor-reactive T lymphocytes as TIL after selection by Melan-A/A2 multimer immunomagnetic sorting.

PubMed

Labarrière, Nathalie; Gervois, Nadine; Bonnin, Annabelle; Bouquié, Régis; Jotereau, Francine; Lang, François

2008-02-01

Choosing a reliable source of tumor-specific T lymphocytes and an efficient method to isolate these cells still remains a critical issue in adoptive cellular therapy (ACT). In this study, we assessed the capacity of MHC/peptide based immunomagnetic sorting followed by polyclonal T cell expansion to derive pure polyclonal and tumor-reactive Melan-A specific T cell populations from melanoma patient's PBMC and TIL. We first demonstrated that this approach was extremely efficient and reproducible. We then used this procedure to compare PBMC and TIL-derived cells from three melanoma patients in terms of avidity for Melan-A A27L analog, Melan-A(26-35)and Melan-A(27-35), tumor reactivity (lysis and cytokine production) and repertoire. Regardless of their origin, i.e., fresh PBMC, peptide stimulated PBMC or TIL, all sorted populations (from the three patients) were cytotoxic against HLA-A2+ melanoma cell lines expressing Melan-A. Although some variability in peptide avidity, lytic activity and cytokine production was observed between populations of different origins in a given patient, it differed from one patient to another and thus no correlation could be drawn between T cell source and reactivity. Analysis of Vbeta usage within the sorted populations showed the recurrence of Vbeta3 and Vbeta14 subfamilies in the three patients but differences in the rest of the Melan-A repertoire. In addition, in two patients, we observed major repertoire differences between populations sorted from the three sources. We especially documented that in vitro peptide stimulation of PBMC, used to facilitate the sort by enriching in specific T lymphocytes, could significantly alter their repertoire and reactivity towards tumor cells. We conclude that PBMC which are easily obtained from all melanoma patients, can be as good a source as TIL to derive high amounts of tumor-reactive Melan-A specific T cells, with this selection/amplification procedure. However, the conditions of peptide stimulation should be improved to prevent a possible loss of reactive clonotypes.

Statistical Equilibrium of Copper in the Solar Atmosphere

NASA Astrophysics Data System (ADS)

Shi, J. R.; Gehren, T.; Zeng, J. L.; Mashonkina, L.; Zhao, G.

2014-02-01

Non-local thermodynamic equilibrium (NLTE) line formation for neutral copper in the one-dimensional solar atmospheres is presented for the atomic model, including 96 terms of Cu I and the ground state of Cu II. The accurate oscillator strengths for all the line transitions in model atom and photoionization cross sections were calculated using the R-matrix method in the Russell-Saunders coupling scheme. The main NLTE mechanism for Cu I is the ultraviolet overionization. We find that NLTE leads to systematically depleted total absorption in the Cu I lines and, accordingly, positive abundance corrections. Inelastic collisions with neutral hydrogen atoms produce minor effects on the statistical equilibrium of Cu I in the solar atmosphere. For the solar Cu I lines, the departures from LTE are found to be small, the mean NLTE abundance correction of ~0.01 dex. It was found that the six low-excitation lines, with excitation energy of the lower level E exc <= 1.64 eV, give a 0.14 dex lower mean solar abundance compared to that from the six E exc > 3.7 eV lines, when applying experimental gf-values of Kock & Richter. Without the two strong resonance transitions, the solar mean NLTE abundance from 10 lines of Cu I is log ɛ⊙(Cu) = 4.19 ± 0.10, which is consistent within the error bars with the meteoritic value 4.25 ± 0.05 of Lodders et al. The discrepancy between E exc = 1.39-1.64 eV and E exc > 3.7 eV lines can be removed when the calculated gf-values are adopted and a mean solar abundance of log ɛ⊙(Cu) = 4.24 ± 0.08 is derived.

Statistical Significance of Periodicity and Log-Periodicity with Heavy-Tailed Correlated Noise

NASA Astrophysics Data System (ADS)

Zhou, Wei-Xing; Sornette, Didier

We estimate the probability that random noise, of several plausible standard distributions, creates a false alarm that a periodicity (or log-periodicity) is found in a time series. The solution of this problem is already known for independent Gaussian distributed noise. We investigate more general situations with non-Gaussian correlated noises and present synthetic tests on the detectability and statistical significance of periodic components. A periodic component of a time series is usually detected by some sort of Fourier analysis. Here, we use the Lomb periodogram analysis, which is suitable and outperforms Fourier transforms for unevenly sampled time series. We examine the false-alarm probability of the largest spectral peak of the Lomb periodogram in the presence of power-law distributed noises, of short-range and of long-range fractional-Gaussian noises. Increasing heavy-tailness (respectively correlations describing persistence) tends to decrease (respectively increase) the false-alarm probability of finding a large spurious Lomb peak. Increasing anti-persistence tends to decrease the false-alarm probability. We also study the interplay between heavy-tailness and long-range correlations. In order to fully determine if a Lomb peak signals a genuine rather than a spurious periodicity, one should in principle characterize the Lomb peak height, its width and its relations to other peaks in the complete spectrum. As a step towards this full characterization, we construct the joint-distribution of the frequency position (relative to other peaks) and of the height of the highest peak of the power spectrum. We also provide the distributions of the ratio of the highest Lomb peak to the second highest one. Using the insight obtained by the present statistical study, we re-examine previously reported claims of ``log-periodicity'' and find that the credibility for log-periodicity in 2D-freely decaying turbulence is weakened while it is strengthened for fracture, for the ion-signature prior to the Kobe earthquake and for financial markets.

He I lines in B stars - Comparison of non-local thermodynamic equilibrium models with observations

NASA Technical Reports Server (NTRS)

Heasley, J. N.; Timothy, J. G.; Wolff, S. C.

1982-01-01

Profiles of He gamma-gamma 4026, 4387, 4471, 4713, 5876, and 6678 have been obtained in 17 stars of spectral type B0-B5. Parameters of the nonlocal thermodynamic equilibrium models appropriate to each star are determined from the Stromgren index and fits to H-alpha line profiles. These parameters yield generally good fits to the observed He I line profiles, with the best fits being found for the blue He I lines where departures from local thermodynamic equilibrium are relatively small. For the two red lines it is found that, in the early B stars and in stars with log g less than 3.5, both lines are systematically stronger than predicted by the nonlocal thermodynamic equilibrium models.

Development of Ku-band rendezvous radar tracking and acquisition simulation programs

NASA Technical Reports Server (NTRS)

1986-01-01

The fidelity of the Space Shuttle Radar tracking simulation model was improved. The data from the Shuttle Orbiter Radar Test and Evaluation (SORTE) program experiments performed at the White Sands Missile Range (WSMR) were reviewed and analyzed. The selected flight rendezvous radar data was evaluated. Problems with the Inertial Line-of-Sight (ILOS) angle rate tracker were evaluated using the improved fidelity angle rate tracker simulation model.

Classification of Kiwifruit Grades Based on Fruit Shape Using a Single Camera

PubMed Central

Fu, Longsheng; Sun, Shipeng; Li, Rui; Wang, Shaojin

2016-01-01

This study aims to demonstrate the feasibility for classifying kiwifruit into shape grades by adding a single camera to current Chinese sorting lines equipped with weight sensors. Image processing methods are employed to calculate fruit length, maximum diameter of the equatorial section, and projected area. A stepwise multiple linear regression method is applied to select significant variables for predicting minimum diameter of the equatorial section and volume and to establish corresponding estimation models. Results show that length, maximum diameter of the equatorial section and weight are selected to predict the minimum diameter of the equatorial section, with the coefficient of determination of only 0.82 when compared to manual measurements. Weight and length are then selected to estimate the volume, which is in good agreement with the measured one with the coefficient of determination of 0.98. Fruit classification based on the estimated minimum diameter of the equatorial section achieves a low success rate of 84.6%, which is significantly improved using a linear combination of the length/maximum diameter of the equatorial section and projected area/length ratios, reaching 98.3%. Thus, it is possible for Chinese kiwifruit sorting lines to reach international standards of grading kiwifruit on fruit shape classification by adding a single camera. PMID:27376292

New radio meteor detecting and logging software

NASA Astrophysics Data System (ADS)

Kaufmann, Wolfgang

2017-08-01

A new piece of software ``Meteor Logger'' for the radio observation of meteors is described. It analyses an incoming audio stream in the frequency domain to detect a radio meteor signal on the basis of its signature, instead of applying an amplitude threshold. For that reason the distribution of the three frequencies with the highest spectral power are considered over the time (3f method). An auto notch algorithm is developed to prevent the radio meteor signal detection from being jammed by a present interference line. The results of an exemplary logging session are discussed.

Effective Cyber Situation Awareness (CSA) Assessment and Training

DTIC Science & Technology

2013-11-01

activity/scenario. y. Save Wireshark Captures. z. Save SNORT logs. aa. Save MySQL databases. 4. After the completion of the scenario, the reversion...line or from custom Java code. • Cisco ASA Parser: Builds normalized vendor-neutral firewall rule specifications from Cisco ASA and PIX firewall...The Service tool lets analysts build Cauldron models from either the command line or from custom Java code. Functionally, it corresponds to the

Multilingual Speech and Language Processing

DTIC Science & Technology

2003-04-01

client software handles the user end of the transaction. Historically, four clients were provided: e-mail, web, FrameMaker , and command line. By...command-line client and an API. The API allows integration of CyberTrans into a number of processes including word processing packages ( FrameMaker ...preservation and logging, and others. The available clients remain e-mail, Web and FrameMaker . Platforms include both Unix and PC for clients, with

The peculiar ring galaxy HRG 54103 revisited

NASA Astrophysics Data System (ADS)

Freitas-Lemes, P.; Krabbe, A. C.; Faúndez-Abans, M.; da Rocha-Poppe, P.; Rodrigues, I.; de Oliveira-Abans, M.; Fernandes-Martin, V. A.

2017-07-01

We present an observational study of the galaxy HRG 54103, a peculiar galaxy with an asymmetric disc ring. The main goal of this work is to study the stellar population and oxygen abundances for the inner bulge region. The kinematics derived from long-slit spectroscopy suggest that the line of nodes of the gaseous component of HRG 54103 is nearly along the galaxy ring minor axis. The gaseous disc seems to be kinematically decoupled relative to the morphology of the stellar ring. A small, but non-negligible, fraction of young stars (5-10 per cent) is estimated to contribute. This object is mainly dominated by old and intermediate stellar populations. The emission-line spectrum shows low-ionization nuclear emission-line region (LINER) type characteristics. We determined oxygen abundances using calibrations between this parameter and the strong emission line ratios known as the indices O3N2 and N2. Our results suggest a relatively homogeneous O/H across the minor axis of the galaxy, with average values of 12 + log(O/H) = 8.4 dex and 12 + log(O/H) = 8.7 dex, using the O3N2 and N2 parameters, respectively. These values are compatible with the few estimations of oxygen abundance for peculiar ring galaxies published in the literature. Implications on the formation history of HRG 54103 were investigated.

Alterations to N-linked oligosaccharides which affect intracellular transport rates and regulated secretion but not sorting of lysosomal acid phosphatase in Dictyostelium discoideum.

PubMed

Bush, J M; Ebert, D L; Cardelli, J A

1990-11-15

The importance of N-linked oligosaccharides and their associated modifications in the transport, sorting, and secretion of lysosomal acid phosphatase was investigated using three mutant Dictyostelium cell lines. These mutants synthesize altered N-linked oligosaccharides with the following properties: (i) in strain HL244 carbohydrate side chains lack mannose 6-sulfate residues, (ii) in strain M31 the side chains retain the two alpha-1,3-linked glucose residues resulting in less sulfate and methylphosphate modifications, and (iii) in strain HL243 the nonglucosylated branches are missing three of the outer mannose sugars and the oligosaccharides contain fewer sulfate and phosphate modifications. Lysosomal enzymes in both HL243 and HL244 are also missing a shared epitope termed common antigen-1 (CA-1), which consists in part of mannose 6-sulfate moieties. No increases were observed in the secretion of radiolabeled acid phosphatase or acid phosphatase activity during growth in any of the mutant cell lines, suggesting that the enzyme was correctly sorted to lysosomes. In support of this, Percoll gradient fractionations and indirect immunofluorescence microscopy indicated that acid phosphatase was transported to lysosomes in all cell lines. However, radiolabel pulse chase protocols indicated that newly synthesized acid phosphatase was transported out of the endoplasmic reticulum (ER) and into lysosomes at a two- to threefold slower rate in HL243 and at a sixfold slower rate in M31. The rate of transport of acid phosphatase from the ER to the Golgi was reduced only twofold in M31 as determined by digestion of newly synthesized enzyme with endoglycosidose H. This suggests that certain alterations in carbohydrate structure may only slightly affect transport of the enzyme from the ER to the Golgi but these alterations may greatly delay transport from the Golgi or post-Golgi compartments to lysosomes. Finally all three mutants secreted acid phosphatase at significantly lower rates than the wild-type strain when growing cells were placed in a buffered salt solution (conditions which stimulate the secretion of mature lysosomally localized enzymes). In contrast, alpha-mannosidase was secreted with similar kinetics from the mutant and wild-type strains. Together, these results suggest that the mechanism(s) operating to sort acid phosphatase in Dictyostelium can tolerate a wide range of changes in N-linked oligosaccharides including a reduction in phosphate and the absence of CA-1 and sulfate, while in contrast, these same alterations can profoundly influence the rate of transport of acid phosphatase from the ER and post-ER compartments to lysosomes as well as the secr

VizieR Online Data Catalog: Nearby B-type stars abundances (Morel+, 2008)

NASA Astrophysics Data System (ADS)

Morel, T.; Butler, K.

2008-06-01

This Table gives the adopted loggf values, EW measurements (in mA) and line-by-line abundances (on the scale in which log[epsilon(H)]=12). A blank indicates that the EW was not reliably measurable, the line was considered blended for the relevant temperature range or yielded a discrepant abundance. The accuracy of the EW measurements is discussed in Sect.3 of the paper. The wing of HeI 4387.9 was taken as pseudo continuum in the case of NeII 4391.99. (2 data files).

Evidence for a temperature rise in the outer layers of alpha Lyrae, from Copernicus observations of Lyman-alpha

NASA Technical Reports Server (NTRS)

Praderie, F.; Simonneau, E.; Snow, T. P., Jr.

1975-01-01

Copernicus satellite observations of the Ly-alpha profiles in alpha Lyrae (Vega) are used to determine whether classical radiative-equilibrium LTE model atmospheres can fit the thermal structure in the outer layers of that star. Two plane-parallel LTE model photospheres of alpha Lyrae are considered: a line-blanketed radiative-equilibrium model with an effective temperature of 9650 K and log g of 4.05, and the same model with a temperature of 9500 K and log g of 4.0. The profiles of the Ly-alpha wings are computed, and it is found that classical LTE models are unable to predict either the observed violet wing or the red wing longwards of 1239 A, regardless of the line source function. It is concluded that the electron temperature must increase outwards over the surface value reached in radiative equilibrium.

Implantation of a multifocal toric intraocular lens with a surface-embedded near segment after repeated LASIK treatments.

PubMed

Khoramnia, Ramin; Auffarth, Gerd U; Rabsilber, Tanja M; Holzer, Mike P

2012-11-01

We report a 66-year-old patient who presented with increasing hyperopia, astigmatism, and presbyopia in both eyes 8 years after bilateral laser in situ keratomileusis (LASIK) and LASIK enhancement in the left eye aiming for spectacle independence. Bilateral multifocal toric Lentis Mplus intraocular lenses (IOLs) with an embedded near segment and individually customized cylinder correction were implanted uneventfully following phacoemulsification. The Haigis-L formula after previous hyperopia correction was chosen for IOL power calculation and provided reliable results. Emmetropia was targeted and achieved. Three months postoperatively, the uncorrected distance visual acuity had increased from 0.40 logMAR to 0.10 logMAR in the right eye and from 0.20 logMAR to 0.00 logMAR in the left eye. The patient gained 6 lines of uncorrected near visual acuity: 0.20 logMAR in the right eye and 0.10 logMAR in the left eye. This case shows that customized premium IOL implantation can provide accurate results even in challenging cases. The International Vision Correction Research Centre, Department of Ophthalmology, University of Heidelberg, Heidelberg, Germany, has received research grants, lecture fees, and travel reimbursement from Oculentis GmbH. Copyright © 2012 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

Finding extraterrestrial sites for thermophiles.

PubMed

Naylor, T

2004-04-01

Virtually our entire knowledge of the universe comes from two sorts of measurement of the electromagnetic radiation from the stars and galaxies within it; either their flux through relatively wide bandpasses (photometry), or measurements of the shape and wavelength of relatively narrow lines via spectroscopy. These techniques are now being used to discover planets outside our solar system, and perhaps in the next 10 years will begin to characterize them. If a serious search is to be made for extraterrestrial thermophiles, we need predictions for the effects of thermophiles on their host planets that are observable with these techniques. In this paper I shall outline what sorts of observation are likely to be used in the next 15 years for extra-solar planet work. All of the journal articles quoted here can be found through http://adsabs.harvard.edu/abstract_service.html, and often also accessed as preprints at http://uk.arxiv.org/form/astro%20ph?MULTI=form%20+/-%20interface.

Mate choice in fruit flies is rational and adaptive.

PubMed

Arbuthnott, Devin; Fedina, Tatyana Y; Pletcher, Scott D; Promislow, Daniel E L

2017-01-17

According to rational choice theory, beneficial preferences should lead individuals to sort available options into linear, transitive hierarchies, although the extent to which non-human animals behave rationally is unclear. Here we demonstrate that mate choice in the fruit fly Drosophila melanogaster results in the linear sorting of a set of diverse isogenic female lines, unambiguously demonstrating the hallmark of rational behaviour, transitivity. These rational choices are associated with direct benefits, enabling males to maximize offspring production. Furthermore, we demonstrate that female behaviours and cues act redundantly in mate detection and assessment, as rational mate choice largely persists when visual or chemical sensory modalities are impaired, but not when both are impaired. Transitivity in mate choice demonstrates that the quality of potential mates varies significantly among genotypes, and that males and females behave in such a way as to facilitate adaptive mate choice.

Real-Time Model and Simulation Architecture for Half- and Full-Bridge Modular Multilevel Converters

NASA Astrophysics Data System (ADS)

Ashourloo, Mojtaba

This work presents an equivalent model and simulation architecture for real-time electromagnetic transient analysis of either half-bridge or full-bridge modular multilevel converter (MMC) with 400 sub-modules (SMs) per arm. The proposed CPU/FPGA-based architecture is optimized for the parallel implementation of the presented MMC model on the FPGA and is beneficiary of a high-throughput floating-point computational engine. The developed real-time simulation architecture is capable of simulating MMCs with 400 SMs per arm at 825 nanoseconds. To address the difficulties of the sorting process implementation, a modified Odd-Even Bubble sorting is presented in this work. The comparison of the results under various test scenarios reveals that the proposed real-time simulator is representing the system responses in the same way of its corresponding off-line counterpart obtained from the PSCAD/EMTDC program.

Reconciling timber extraction with biodiversity conservation in tropical forests using reduced-impact logging

PubMed Central

Bicknell, Jake E; Struebig, Matthew J; Davies, Zoe G; Baraloto, Christopher

2015-01-01

Over 20% of the world's tropical forests have been selectively logged, and large expanses are allocated for future timber extraction. Reduced-impact logging (RIL) is being promoted as best practice forestry that increases sustainability and lowers CO2 emissions from logging, by reducing collateral damage associated with timber extraction. RIL is also expected to minimize the impacts of selective logging on biodiversity, although this is yet to be thoroughly tested. We undertake the most comprehensive study to date to investigate the biodiversity impacts of RIL across multiple taxonomic groups. We quantified birds, bats and large mammal assemblage structures, using a before-after control-impact (BACI) design across 20 sample sites over a 5-year period. Faunal surveys utilized point counts, mist nets and line transects and yielded >250 species. We examined assemblage responses to logging, as well as partitions of feeding guild and strata (understorey vs. canopy), and then tested for relationships with logging intensity to assess the primary determinants of community composition. Community analysis revealed little effect of RIL on overall assemblages, as structure and composition were similar before and after logging, and between logging and control sites. Variation in bird assemblages was explained by natural rates of change over time, and not logging intensity. However, when partitioned by feeding guild and strata, the frugivorous and canopy bird ensembles changed as a result of RIL, although the latter was also associated with change over time. Bats exhibited variable changes post-logging that were not related to logging, whereas large mammals showed no change at all. Indicator species analysis and correlations with logging intensities revealed that some species exhibited idiosyncratic responses to RIL, whilst abundance change of most others was associated with time. Synthesis and applications. Our study demonstrates the relatively benign effect of reduced-impact logging (RIL) on birds, bats and large mammals in a neotropical forest context, and therefore, we propose that forest managers should improve timber extraction techniques more widely. If RIL is extensively adopted, forestry concessions could represent sizeable and important additions to the global conservation estate – over 4 million km2. PMID:25954054

Log polar image sensor in CMOS technology

NASA Astrophysics Data System (ADS)

Scheffer, Danny; Dierickx, Bart; Pardo, Fernando; Vlummens, Jan; Meynants, Guy; Hermans, Lou

1996-08-01

We report on the design, design issues, fabrication and performance of a log-polar CMOS image sensor. The sensor is developed for the use in a videophone system for deaf and hearing impaired people, who are not capable of communicating through a 'normal' telephone. The system allows 15 detailed images per second to be transmitted over existing telephone lines. This framerate is sufficient for conversations by means of sign language or lip reading. The pixel array of the sensor consists of 76 concentric circles with (up to) 128 pixels per circle, in total 8013 pixels. The interior pixels have a pitch of 14 micrometers, up to 250 micrometers at the border. The 8013-pixels image is mapped (log-polar transformation) in a X-Y addressable 76 by 128 array.

Spectroscopic properties of a two-dimensional time-dependent Cepheid model. II. Determination of stellar parameters and abundances

NASA Astrophysics Data System (ADS)

Vasilyev, V.; Ludwig, H.-G.; Freytag, B.; Lemasle, B.; Marconi, M.

2018-03-01

Context. Standard spectroscopic analyses of variable stars are based on hydrostatic 1D model atmospheres. This quasi-static approach has not been theoretically validated. Aim. We aim at investigating the validity of the quasi-static approximation for Cepheid variables. We focus on the spectroscopic determination of the effective temperature Teff, surface gravity log g, microturbulent velocity ξt, and a generic metal abundance log A, here taken as iron. Methods: We calculated a grid of 1D hydrostatic plane-parallel models covering the ranges in effective temperature and gravity that are encountered during the evolution of a 2D time-dependent envelope model of a Cepheid computed with the radiation-hydrodynamics code CO5BOLD. We performed 1D spectral syntheses for artificial iron lines in local thermodynamic equilibrium by varying the microturbulent velocity and abundance. We fit the resulting equivalent widths to corresponding values obtained from our dynamical model for 150 instances in time, covering six pulsational cycles. In addition, we considered 99 instances during the initial non-pulsating stage of the temporal evolution of the 2D model. In the most general case, we treated Teff, log g, ξt, and log A as free parameters, and in two more limited cases, we fixed Teff and log g by independent constraints. We argue analytically that our approach of fitting equivalent widths is closely related to current standard procedures focusing on line-by-line abundances. Results: For the four-parametric case, the stellar parameters are typically underestimated and exhibit a bias in the iron abundance of ≈-0.2 dex. To avoid biases of this type, it is favorable to restrict the spectroscopic analysis to photometric phases ϕph ≈ 0.3…0.65 using additional information to fix the effective temperature and surface gravity. Conclusions: Hydrostatic 1D model atmospheres can provide unbiased estimates of stellar parameters and abundances of Cepheid variables for particular phases of their pulsations. We identified convective inhomogeneities as the main driver behind potential biases. To obtain a complete view on the effects when determining stellar parameters with 1D models, multidimensional Cepheid atmosphere models are necessary for variables of longer period than investigated here.

Geohydrologic and water-quality data in the vicinity of the Rialto-Colton Fault, San Bernardino, California

USGS Publications Warehouse

Teague, Nicholas F.; Brown, Anthony A.; Woolfenden, Linda R.

2014-01-01

The Rialto-Colton Basin is in western San Bernardino County, about 60 miles east of Los Angeles, California. The basin is bounded by faults on the northeast and southwest sides and contains multiple barriers to groundwater flow. The structural geology of the basin leads to complex hydrology. Between 2001 and 2008, in an effort to better understand the complex hydrologic system of the Rialto-Colton Basin, seven multiple-well monitoring sites were constructed. Two to six observation wells were installed in the borehole at each site; a total of 32 observation wells were installed. This report presents geologic, hydrologic, and water-quality data collected from these seven multiple-well monitoring sites. Descriptions of the collected drill cuttings were compiled into lithologic logs for each monitoring site. The lithologic logs are summarized along with the geophysical logs, including gamma-ray, spontaneous potential, resistivity, and electromagnetic induction tool logs. At selected sites, sonic tool logs also were recorded. Periodic water-level measurements are reported, and water-level data are displayed on hydrographs. Water levels at multiple-well monitoring sites in the northern part of the study area differed between the shallow and deep observation wells; in the remaining multiple-well monitoring sites, water levels differed little with depth. Along the southern trace of the Rialto-Colton Fault, water levels are slightly higher east of the fault than west of the fault. Selected water-quality data for 21 of the observation wells show water from wells in the northern and central parts of the study area is calcium-carbonate water. In the southern part of the study area, water from wells screened above 400 feet below land surface is of mixed type or is calcium-carbonate water. Water from wells screened greater than 400 feet below land surface in the southern part of the study area is sodium-carbonate or sodium-mixed anion water. Water from most wells in the study area plots above the Global Meteoric Water Line along an apparent local meteoric water line, indicating the water has not experienced substantial evaporation before infiltration. A few samples from shallow wells in the study area plot slightly to the right of the Global Meteoric Water Line, possibly indicating the water experienced some evaporation before recharge.

Neural network hardware and software solutions for sorting of waste plastics for recycling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanton, S.L.; Alam, M.K.; Hebner, G.A.

1992-12-31

While plastic recycling efforts have expanded during the past several years, the cost of recovering plastics is still a major impediment for recyclers. Several factors contribute to the prohibitive cost of recycled resins, including the present low marketability of products made with mixed recycled materials, and costs of collecting, sorting and reprocessing plastic materials. A method for automatic sorting of post-consumer plastics into pure polymer streams is needed to overcome the inaccuracies and low product throughput of the currently used method of hand sorting of waste plastics for recycling. The Society of Plastics has designated seven categories as recyclable: Polyethylenemore » terephthalate (PET); High Density Polyethylene (HDPE); Polyvinyl Chloride (PVC); Low Density Polyethylene (LDPE); Polypropylene (PP); Polystyrene (PS); and Other (mixtures, layered items, etc.). With these categories in mind, a system for sorting of waste plastics using near-infrared reflectance spectra and a backpropagation neural network classifier has been developed. A solution has been demonstrated in the laboratory using a high resolution, and relatively slow instrument. A faster instrument is being developed at this time. Neural network hardware options have been evaluated for use in a real-time industrial system. In the lab, a Fourier transform Near Infrared (FT-NIR) scanning spectrometer was used to gather reflectance data from various locations on samples of actual waste plastics. Neural networks were trained off-line with this data using the NeuralWorks Professional II Plus software package on a SparcStation 2. One of the successfully trained networks was used to compare the neural accelerator hardware options available. The results of running this ``worst case`` network on the neural network hardware will be presented. The AT&T ANNA chip and the Intel 80170NX chip development system were used to determine the ease of implementation and accuracies for this network.« less

Neural network hardware and software solutions for sorting of waste plastics for recycling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanton, S.L.; Alam, M.K.; Hebner, G.A.

1992-01-01

While plastic recycling efforts have expanded during the past several years, the cost of recovering plastics is still a major impediment for recyclers. Several factors contribute to the prohibitive cost of recycled resins, including the present low marketability of products made with mixed recycled materials, and costs of collecting, sorting and reprocessing plastic materials. A method for automatic sorting of post-consumer plastics into pure polymer streams is needed to overcome the inaccuracies and low product throughput of the currently used method of hand sorting of waste plastics for recycling. The Society of Plastics has designated seven categories as recyclable: Polyethylenemore » terephthalate (PET); High Density Polyethylene (HDPE); Polyvinyl Chloride (PVC); Low Density Polyethylene (LDPE); Polypropylene (PP); Polystyrene (PS); and Other (mixtures, layered items, etc.). With these categories in mind, a system for sorting of waste plastics using near-infrared reflectance spectra and a backpropagation neural network classifier has been developed. A solution has been demonstrated in the laboratory using a high resolution, and relatively slow instrument. A faster instrument is being developed at this time. Neural network hardware options have been evaluated for use in a real-time industrial system. In the lab, a Fourier transform Near Infrared (FT-NIR) scanning spectrometer was used to gather reflectance data from various locations on samples of actual waste plastics. Neural networks were trained off-line with this data using the NeuralWorks Professional II Plus software package on a SparcStation 2. One of the successfully trained networks was used to compare the neural accelerator hardware options available. The results of running this worst case'' network on the neural network hardware will be presented. The AT T ANNA chip and the Intel 80170NX chip development system were used to determine the ease of implementation and accuracies for this network.« less

Improved Yttrium and Zirconium Abundances in Metal-Poor Stars

NASA Astrophysics Data System (ADS)

Violante, Renata; Biemont, E.; Cowan, J. J.; Sneden, C.

2012-01-01

Abstract We present new abundances of the lighter n-capture elements, Yttrium (Z=39) and Zirconium (Z=40) in the very metal poor, r-process rich stars BD+17 3248 and HD 221170. Very accurate abundances were obtained by use of the new transition probabilities for Y II published by Biémont et al. 2011, and Zr II by Malcheva et al. 2006, and by expanding the number of transitions employed for each element. For example, in BD+17 3248, we find log ɛπσιλον=-0.03 +/- 0.03 (σιγμα=0.15, from 23 lines) for Y II. As for Zr II, log ɛπσιλον = 0.65 +/- 0.03 (σɛγμα = 0.1, from 13 lines). The resulting abundance ratio is log ɛπσιλον [Y/Zr] = -0.68 +/- 0.05. The results for HD 221170 are in accord with those of BD+17 3248. The quantity of lines used to form the abundance means has increased significantly since the original studies of these stars, resulting in more trustworthy abundances. These observed abundance ratios are in agreement with an r-process-only value predicted from stellar models, but is under-abundant compared to an empirical model derived from direct analyses of meteoritic material. This ambiguity should stimulate further nucleosynthetic analysis to explain this abundance ratio. We would like to extend our gratitude to NSF grant AST-0908978 and the University of Texas Astronomy Department Rex G. Baker, Jr. Endowment for their financial support in this project.

Multiparameter cell affinity chromatography: separation and analysis in a single microfluidic channel.

PubMed

Li, Peng; Gao, Yan; Pappas, Dimitri

2012-10-02

The ability to sort and capture more than one cell type from a complex sample will enable a wide variety of studies of cell proliferation and death and the analysis of disease states. In this work, we integrated a pneumatic actuated control layer to an affinity separation layer to create different antibody-coating regions on the same fluidic channel. The comparison of different antibody capture capabilities to the same cell line was demonstrated by flowing Ramos cells through anti-CD19- and anti-CD71-coated regions in the same channel. It was determined that the cell capture density on the anti-CD19 region was 2.44 ± 0.13 times higher than that on the anti-CD71-coated region. This approach can be used to test different affinity molecules for selectivity and capture efficiency using a single cell line in one separation. Selective capture of Ramos and HuT 78 cells from a mixture was also demonstrated using two antibody regions in the same channel. Greater than 90% purity was obtained on both capture areas in both continuous flow and stop flow separation modes. A four-region antibody-coated device was then fabricated to study the simultaneous, serial capture of three different cell lines. In this case the device showed effective capture of cells in a single separation channel, opening up the possibility of multiple cell sorting. Multiparameter sequential blood sample analysis was also demonstrated with high capture specificity (>97% for both CD19+ and CD4+ leukocytes). The chip can also be used to selectively treat cells after affinity separation.

PULSE AMPLITUDE ANALYZER

DOEpatents

Gray, G.W.; Jensen, A.S.

1957-10-22

A pulse-height analyzer system of improved design for sorting and counting a series of pulses, such as provided by a scintillation detector in nuclear radiation measurements, is described. The analyzer comprises a main transmission line, a cathode-ray tube for each section of the line with its deflection plates acting as the line capacitance; means to bias the respective cathode ray tubes so that the beam strikes a target only when a prearranged pulse amplitude is applied, with each tube progressively biased to respond to smaller amplitudes; pulse generating and counting means associated with each tube to respond when the beam is deflected; a control transmission line having the same time constant as the first line per section with pulse generating means for each tube for initiating a pulse on the second transmission line when a pulse triggers the tube of corresponding amplitude response, the former pulse acting to prevent successive tubes from responding to the pulse under test. This arrangement permits greater deflection sensitivity in the cathode ray tube and overcomes many of the disadvantages of prior art pulse-height analyzer circuits.

Analyzing coastal environments by means of functional data analysis

NASA Astrophysics Data System (ADS)

Sierra, Carlos; Flor-Blanco, Germán; Ordoñez, Celestino; Flor, Germán; Gallego, José R.

2017-07-01

Here we used Functional Data Analysis (FDA) to examine particle-size distributions (PSDs) in a beach/shallow marine sedimentary environment in Gijón Bay (NW Spain). The work involved both Functional Principal Components Analysis (FPCA) and Functional Cluster Analysis (FCA). The grainsize of the sand samples was characterized by means of laser dispersion spectroscopy. Within this framework, FPCA was used as a dimension reduction technique to explore and uncover patterns in grain-size frequency curves. This procedure proved useful to describe variability in the structure of the data set. Moreover, an alternative approach, FCA, was applied to identify clusters and to interpret their spatial distribution. Results obtained with this latter technique were compared with those obtained by means of two vector approaches that combine PCA with CA (Cluster Analysis). The first method, the point density function (PDF), was employed after adapting a log-normal distribution to each PSD and resuming each of the density functions by its mean, sorting, skewness and kurtosis. The second applied a centered-log-ratio (clr) to the original data. PCA was then applied to the transformed data, and finally CA to the retained principal component scores. The study revealed functional data analysis, specifically FPCA and FCA, as a suitable alternative with considerable advantages over traditional vector analysis techniques in sedimentary geology studies.

Aircraft- and ground-based assessment of the CCN-AOD relationship and implications on model analysis of ACI and underlying aerosol processes

NASA Astrophysics Data System (ADS)

Shinozuka, Y.; Clarke, A. D.; Nenes, A.; Lathem, T. L.; Redemann, J.; Jefferson, A.; Wood, R.

2014-12-01

Contrary to common assumptions in satellite-based modeling of aerosol-cloud interactions, ∂logCCN/∂logAOD is less than unity, i.e., the number concentration of cloud condensation nuclei (CCN) less than doubles as aerosol optical depth (AOD) doubles. This can be explained by omnipresent aerosol processes. Condensation, coagulation and cloud processing, for example, generally make particles scatter more light while hardly increasing their number. This paper reports on the relationship in local air masses between CCN concentration, aerosol size distribution and light extinction observed from aircraft and the ground at diverse locations. The CCN-to-local-extinction relationship, when averaged over ~1 km distance and sorted by the wavelength dependence of extinction, varies approximately by a factor of 2, reflecting the variability in aerosol intensive properties. This, together with retrieval uncertainties and the variability in aerosol spatio-temporal distribution and hygroscopic growth, challenges satellite-based CCN estimates. However, the large differences in estimated CCN may correspond to a considerably lower uncertainty in cloud drop number concentration (CDNC), given the sublinear response of CDNC to CCN. Overall, our findings from airborne and ground-based observations call for model-based reexamination of aerosol-cloud interactions and underlying aerosol processes.

NK Cells with KIR2DS2 Immunogenotype Have a Functional Activation Advantage To Efficiently Kill Glioblastoma and Prolong Animal Survival

PubMed Central

Gras Navarro, Andrea; Kmiecik, Justyna; Leiss, Lina; Zelkowski, Mateusz; Engelsen, Agnete; Bruserud, Øystein; Zimmer, Jacques; Enger, Per Øyvind

2014-01-01

Glioblastomas (GBMs) are lethal brain cancers that are resistant to current therapies. We investigated the cytotoxicity of human allogeneic NK cells against patient-derived GBM in vitro and in vivo, as well as mechanisms mediating their efficacy. We demonstrate that KIR2DS2 immunogenotype NK cells were more potent killers, notwithstanding the absence of inhibitory killer Ig–like receptor (KIR)-HLA ligand mismatch. FACS-sorted and enriched KIR2DS2+ NK cell subpopulations retained significantly high levels of CD69 and CD16 when in contact with GBM cells at a 1:1 ratio and highly expressed CD107a and secreted more soluble CD137 and granzyme A. In contrast, KIR2DS2− immunogenotype donor NK cells were less cytotoxic against GBM and K562, and, similar to FACS-sorted or gated KIR2DS2− NK cells, significantly diminished CD16, CD107a, granzyme A, and CD69 when in contact with GBM cells. Furthermore, NK cell–mediated GBM killing in vitro depended upon the expression of ligands for the activating receptor NKG2D and was partially abrogated by Ab blockade. Treatment of GBM xenografts in NOD/SCID mice with NK cells from a KIR2DS2+ donor lacking inhibitory KIR-HLA ligand mismatch significantly prolonged the median survival to 163 d compared with vehicle controls (log-rank test, p = 0.0001), in contrast to 117.5 d (log-rank test, p = 0.0005) for NK cells with several inhibitory KIR-HLA ligand mismatches but lacking KIR2DS2 genotype. Significantly more CD56+CD16+ NK cells from a KIR2DS2+ donor survived in nontumor-bearing brains 3 wk after infusion compared with KIR2DS2− NK cells, independent of their proliferative capacity. In conclusion, KIR2DS2 identifies potent alloreactive NK cells against GBM that are mediated by commensurate, but dominant, activating signals. PMID:25381437

Sorting nexin 27 (SNX27) regulates the trafficking and activity of the glutamine transporter ASCT2.

PubMed

Yang, Zhe; Follett, Jordan; Kerr, Markus C; Clairfeuille, Thomas; Chandra, Mintu; Collins, Brett M; Teasdale, Rohan D

2018-05-04

Alanine-, serine-, cysteine-preferring transporter 2 (ASCT2, SLC1A5) is responsible for the uptake of glutamine into cells, a major source of cellular energy and a key regulator of mammalian target of rapamycin (mTOR) activation. Furthermore, ASCT2 expression has been reported in several human cancers, making it a potential target for both diagnostic and therapeutic purposes. Here we identify ASCT2 as a membrane-trafficked cargo molecule, sorted through a direct interaction with the PDZ domain of sorting nexin 27 (SNX27). Using both membrane fractionation and subcellular localization approaches, we demonstrate that the majority of ASCT2 resides at the plasma membrane. This is significantly reduced within CrispR-mediated SNX27 knockout (KO) cell lines, as it is missorted into the lysosomal degradation pathway. The reduction of ASCT2 levels in SNX27 KO cells leads to decreased glutamine uptake, which, in turn, inhibits cellular proliferation. SNX27 KO cells also present impaired activation of the mTOR complex 1 (mTORC1) pathway and enhanced autophagy. Taken together, our data reveal a role for SNX27 in glutamine uptake and amino acid-stimulated mTORC1 activation via modulation of ASCT2 intracellular trafficking. © 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Construction and validation of logMAR visual acuity charts in seven Indian languages.

PubMed

Negiloni, Kalpa; Mazumdar, Deepmala; Neog, Aditya; Das, Biman; Medhi, Jnanankar; Choudhury, Mitalee; George, Ronnie Jacob; Ramani, Krishna Kumar

2018-05-01

The evaluation of visual impairment requires the measurement of visual acuity with a validated and standard logMAR visual acuity chart. We aimed to construct and validate new logMAR visual acuity chart in Indian languages (Hindi, Bengali, Telugu, Urdu, Kannada, Malayalam, and Assamese). The commonly used font in each language was chosen as the reference and designed to fit the 5 × 5 grid (Adobe Photoshop). Ten letters (easiest to difficult) around median legibility score calculated for each language based on the results of legibility experiment and differing by 10% were selected. The chart was constructed based on the standard recommendations. The repeatability of charts was tested and also compared with a standard English Early Treatment Diabetic Retinopathy Study (ETDRS) logMAR chart for validation. A total of 14 rows (1.0 to -0.3 logMAR) with five letters in each line were designed with the range of row legibility between 4.7 and 5.3 for all the language charts. Each chart showed good repeatability, and a maximum difference of four letters was noted. The median difference in visual acuity was 0.16 logMAR for Urdu and Assamese chart compared to ETDRS English chart. Hindi and Malayalam chart had a median difference of 0.12 logMAR. When compared to the English chart a median difference of 0.14 logMAR was noted in Telugu, Kannada, and Bengali chart. The newly developed Indian language visual acuity charts are designed based on the standard recommendations and will help to assess visual impairment in people of these languages across the country.

Analysis of survival in breast cancer patients by using different parametric models

NASA Astrophysics Data System (ADS)

Enera Amran, Syahila; Asrul Afendi Abdullah, M.; Kek, Sie Long; Afiqah Muhamad Jamil, Siti

2017-09-01

In biomedical applications or clinical trials, right censoring was often arising when studying the time to event data. In this case, some individuals are still alive at the end of the study or lost to follow up at a certain time. It is an important issue to handle the censoring data in order to prevent any bias information in the analysis. Therefore, this study was carried out to analyze the right censoring data with three different parametric models; exponential model, Weibull model and log-logistic models. Data of breast cancer patients from Hospital Sultan Ismail, Johor Bahru from 30 December 2008 until 15 February 2017 was used in this study to illustrate the right censoring data. Besides, the covariates included in this study are the time of breast cancer infection patients survive t, age of each patients X1 and treatment given to the patients X2 . In order to determine the best parametric models in analysing survival of breast cancer patients, the performance of each model was compare based on Akaike Information Criterion (AIC), Bayesian Information Criterion (BIC) and log-likelihood value using statistical software R. When analysing the breast cancer data, all three distributions were shown consistency of data with the line graph of cumulative hazard function resembles a straight line going through the origin. As the result, log-logistic model was the best fitted parametric model compared with exponential and Weibull model since it has the smallest value in AIC and BIC, also the biggest value in log-likelihood.

Atropine vs patching for treatment of moderate amblyopia: follow-up at 15 years of age of a randomized clinical trial.

PubMed

Repka, Michael X; Kraker, Raymond T; Holmes, Jonathan M; Summers, Allison I; Glaser, Stephen R; Barnhardt, Carmen N; Tien, David R

2014-07-01

Initial treatment for amblyopia of the fellow eye with patching and atropine sulfate eyedrops improves visual acuity. Long-term data on the durability of treatment benefit are needed. To report visual acuity at 15 years of age among patients who were younger than 7 years when enrolled in a treatment trial for moderate amblyopia. In a multicenter clinical trial, 419 children with amblyopia (visual acuity, 20/40 to 20/100) were randomly assigned to patching (minimum of 6 h/d) or atropine sulfate eyedrops, 1% (1 drop daily), for 6 months. Treatment after 6 months was at the discretion of the investigator. Two years after enrollment, an unselected subgroup of 188 children were enrolled into long-term follow-up. Initial treatment with patching or atropine with subsequent treatment at investigator discretion. Visual acuity at 15 years of age with the electronic Early Treatment Diabetic Retinopathy Study test in amblyopic and fellow eyes. Mean visual acuity in the amblyopic eye measured in 147 participants at 15 years of age was 0.14 logMAR (approximately 20/25); 59.9% of amblyopic eyes had visual acuity of 20/25 or better and 33.3%, 20/20 or better. Mean interocular acuity difference (IOD) at 15 years of age was 0.21 logMAR (2.1 lines); 48.3% had an IOD of 2 or more lines and 71.4%, 1 or more lines. Treatment (other than spectacles) was prescribed for 9 participants (6.1%) aged 10 to 15 years. Mean IOD was similar at examinations at 10 and 15 years of age (2.0 and 2.1 logMAR lines, respectively; P = .39). Better visual acuity at the 15-year examination was achieved in those who were younger than 5 years at the time of entry into the randomized clinical trial (mean logMAR, 0.09) compared with those aged 5 to 6 years (mean logMAR, 0.18; P < .001). When we compared subgroups based on original treatment with atropine or patching, no significant differences were observed in visual acuity of amblyopic and fellow eyes at 15 years of age (P = .44 and P = .43, respectively). At 15 years of age, most children treated for moderate amblyopia when younger than 7 years have good visual acuity, although mild residual amblyopia is common. The outcome is similar regardless of initial treatment with atropine or patching. The results indicate that improvement occurring with amblyopia treatment is maintained until at least 15 years of age. clinicaltrials.gov Identifier: NCT00000170.

Regression Discontinuity and Randomized Controlled Trial Estimates: An Application to The Mycotic Ulcer Treatment Trials.

PubMed

Oldenburg, Catherine E; Venkatesh Prajna, N; Krishnan, Tiruvengada; Rajaraman, Revathi; Srinivasan, Muthiah; Ray, Kathryn J; O'Brien, Kieran S; Glymour, M Maria; Porco, Travis C; Acharya, Nisha R; Rose-Nussbaumer, Jennifer; Lietman, Thomas M

2018-08-01

We compare results from regression discontinuity (RD) analysis to primary results of a randomized controlled trial (RCT) utilizing data from two contemporaneous RCTs for treatment of fungal corneal ulcers. Patients were enrolled in the Mycotic Ulcer Treatment Trials I and II (MUTT I & MUTT II) based on baseline visual acuity: patients with acuity ≤ 20/400 (logMAR 1.3) enrolled in MUTT I, and >20/400 in MUTT II. MUTT I investigated the effect of topical natamycin versus voriconazole on best spectacle-corrected visual acuity. MUTT II investigated the effect of topical voriconazole plus placebo versus topical voriconazole plus oral voriconazole. We compared the RD estimate (natamycin arm of MUTT I [N = 162] versus placebo arm of MUTT II [N = 54]) to the RCT estimate from MUTT I (topical natamycin [N = 162] versus topical voriconazole [N = 161]). In the RD, patients receiving natamycin had mean improvement of 4-lines of visual acuity at 3 months (logMAR -0.39, 95% CI: -0.61, -0.17) compared to topical voriconazole plus placebo, and 2-lines in the RCT (logMAR -0.18, 95% CI: -0.30, -0.05) compared to topical voriconazole. The RD and RCT estimates were similar, although the RD design overestimated effects compared to the RCT.

Use of NAD(P)H fluorescence measurement for on-line monitoring of metabolic state of Azohydromonas australica in poly(3-hydroxybutyrate) production.

PubMed

Gahlawat, Geeta; Srivastava, Ashok K

2013-02-01

Culture fluorescence measurement is an indirect and non-invasive method of biomass estimation to assess the metabolic state of the microorganism in a fermentation process. In the present investigation, NAD(P)H fluorescence has been used for on-line in situ characterization of metabolic changes occurring during different phases of batch cultivation of Azohydromonas australica in growth associated poly(3-hydroxybutyrate) or PHB production. A linear correlation between biomass concentration and net NAD(P)H fluorescence was obtained during early log phase (3-12 h) and late log phase (24-39 h) of PHB fermentation. After 12 h (mid log phase) cultivation PHB accumulation shot up and a drop in culture fluorescence was observed which synchronously exhibited continuous utilization of NAD(P)H for the synthesis of biomass and PHB formation simultaneously. A decrease in the observed net fluorescence value was observed again towards the end of fermentation (at 39 h) which corresponded very well with the culture starvation and substrate depletion towards the end of cultivation inside the bioreactor. It was therefore concluded that NAD(P)H fluorescence measurements could be used for indication of the time of fresh nutrient (substrate) feed during substrate limitation to further enhance the PHB production.

The Quasar Fraction in Low-Frequency Selected Complete Samples and Implications for Unified Schemes

NASA Technical Reports Server (NTRS)

Willott, Chris J.; Rawlings, Steve; Blundell, Katherine M.; Lacy, Mark

2000-01-01

Low-frequency radio surveys are ideal for selecting orientation-independent samples of extragalactic sources because the sample members are selected by virtue of their isotropic steep-spectrum extended emission. We use the new 7C Redshift Survey along with the brighter 3CRR and 6C samples to investigate the fraction of objects with observed broad emission lines - the 'quasar fraction' - as a function of redshift and of radio and narrow emission line luminosity. We find that the quasar fraction is more strongly dependent upon luminosity (both narrow line and radio) than it is on redshift. Above a narrow [OII] emission line luminosity of log(base 10) (L(sub [OII])/W) approximately > 35 [or radio luminosity log(base 10) (L(sub 151)/ W/Hz.sr) approximately > 26.5], the quasar fraction is virtually independent of redshift and luminosity; this is consistent with a simple unified scheme with an obscuring torus with a half-opening angle theta(sub trans) approximately equal 53 deg. For objects with less luminous narrow lines, the quasar fraction is lower. We show that this is not due to the difficulty of detecting lower-luminosity broad emission lines in a less luminous, but otherwise similar, quasar population. We discuss evidence which supports at least two probable physical causes for the drop in quasar fraction at low luminosity: (i) a gradual decrease in theta(sub trans) and/or a gradual increase in the fraction of lightly-reddened (0 approximately < A(sub V) approximately < 5) lines-of-sight with decreasing quasar luminosity; and (ii) the emergence of a distinct second population of low luminosity radio sources which, like M8T, lack a well-fed quasar nucleus and may well lack a thick obscuring torus.

Quality of the log-geometric distribution extrapolation for smaller undiscovered oil and gas pool size

USGS Publications Warehouse

Chenglin, L.; Charpentier, R.R.

2010-01-01

The U.S. Geological Survey procedure for the estimation of the general form of the parent distribution requires that the parameters of the log-geometric distribution be calculated and analyzed for the sensitivity of these parameters to different conditions. In this study, we derive the shape factor of a log-geometric distribution from the ratio of frequencies between adjacent bins. The shape factor has a log straight-line relationship with the ratio of frequencies. Additionally, the calculation equations of a ratio of the mean size to the lower size-class boundary are deduced. For a specific log-geometric distribution, we find that the ratio of the mean size to the lower size-class boundary is the same. We apply our analysis to simulations based on oil and gas pool distributions from four petroleum systems of Alberta, Canada and four generated distributions. Each petroleum system in Alberta has a different shape factor. Generally, the shape factors in the four petroleum systems stabilize with the increase of discovered pool numbers. For a log-geometric distribution, the shape factor becomes stable when discovered pool numbers exceed 50 and the shape factor is influenced by the exploration efficiency when the exploration efficiency is less than 1. The simulation results show that calculated shape factors increase with those of the parent distributions, and undiscovered oil and gas resources estimated through the log-geometric distribution extrapolation are smaller than the actual values. ?? 2010 International Association for Mathematical Geology.

Online Multitasking Line-Scan Imaging Techniques for Simultaneous Safety and Quality Evaluation of Apples

NASA Astrophysics Data System (ADS)

Kim, Moon Sung; Lee, Kangjin; Chao, Kaunglin; Lefcourt, Alan; Cho, Byung-Kwan; Jun, Won

We developed a push-broom, line-scan imaging system capable of simultaneous measurements of reflectance and fluorescence. The system allows multitasking inspections for quality and safety attributes of apples due to its dynamic capabilities in simultaneously capturing fluorescence and reflectance, and selectivity in multispectral bands. A multitasking image-based inspection system for online applications has been suggested in that a single imaging device that could perform a multitude of both safety and quality inspection needs. The presented multitask inspection approach in online applications may provide an economically viable means for a number of food processing industries being able to adapt to operate and meet the dynamic and specific inspection and sorting needs.

Intensity compensation for on-line detection of defects on fruit

NASA Astrophysics Data System (ADS)

Wen, Zhiqing; Tao, Yang

1997-10-01

A machine-vision sorting system was developed that utilizes the difference in light reflectance of fruit surfaces to distinguish the defective and good apples. To accommodate to the spherical reflectance characteristics of fruit with curved surface like apple, a spherical transform algorithm was developed that converts the original image to a non-radiant image without losing defective segments on the fruit. To prevent high-quality dark-colored fruit form being classified into the defective class and increase the defect detection rate for light-colored fruit, an intensity compensation method using maximum propagation was used. Experimental results demonstrated the effectiveness of the method based on maximum propagation and spherical transform for on-line detection of defects on apples.

BD-22deg3467, a DAO-type Star Exciting the Nebula Abell 35

NASA Technical Reports Server (NTRS)

Ziegler, M.; Rauch, T.; Werner, K.; Koppen, J.; Kruk, J. W.

2013-01-01

Spectral analyses of hot, compact stars with non-local thermodynamical equilibrium (NLTE) model-atmosphere techniques allow the precise determination of photospheric parameters such as the effective temperature (T(sub eff)), the surface gravity (log g), and the chemical composition. The derived photospheric metal abundances are crucial constraints for stellar evolutionary theory. Aims. Previous spectral analyses of the exciting star of the nebula A35, BD-22deg3467, were based on He+C+N+O+Si+Fe models only. For our analysis, we use state-of-the-art fully metal-line blanketed NLTE model atmospheres that consider opacities of 23 elements from hydrogen to nickel. We aim to identify all observed lines in the ultraviolet (UV) spectrum of BD-22deg3467 and to determine the abundances of the respective species precisely. Methods. For the analysis of high-resolution and high signal-to-noise ratio (S/N) far-ultraviolet (FUSE) and UV (HST/STIS) observations, we combined stellar-atmosphere models and interstellar line-absorption models to fully reproduce the entire observed UV spectrum. Results. The best agreement with the UV observation of BD-22deg3467 is achieved at T(sub eff) = 80 +/- 10 kK and log g = 7.2 +/- 0.3. While T(sub eff) of previous analyses is verified, log g is significantly lower. We re-analyzed lines of silicon and iron (1/100 and about solar abundances, respectively) and for the first time in this star identified argon, chromium, manganese, cobalt, and nickel and determined abundances of 12, 70, 35, 150, and 5 times solar, respectively. Our results partially agree with predictions of diffusion models for DA-type white dwarfs. A combination of photospheric and interstellar line-absorption models reproduces more than 90% of the observed absorption features. The stellar mass is M approx. 0.48 Solar Mass. Conclusions. BD.22.3467 may not have been massive enough to ascend the asymptotic giant branch and may have evolved directly from the extended horizontal branch to the white dwarf state. This would explain why it is not surrounded by a planetary nebula. However, the star, ionizes the ambient interstellar matter, mimicking a planetary nebula.

The Belgian repository of fundamental atomic data and stellar spectra (BRASS). I. Cross-matching atomic databases of astrophysical interest

NASA Astrophysics Data System (ADS)

Laverick, M.; Lobel, A.; Merle, T.; Royer, P.; Martayan, C.; David, M.; Hensberge, H.; Thienpont, E.

2018-04-01

Context. Fundamental atomic parameters, such as oscillator strengths, play a key role in modelling and understanding the chemical composition of stars in the Universe. Despite the significant work underway to produce these parameters for many astrophysically important ions, uncertainties in these parameters remain large and can propagate throughout the entire field of astronomy. Aims: The Belgian repository of fundamental atomic data and stellar spectra (BRASS) aims to provide the largest systematic and homogeneous quality assessment of atomic data to date in terms of wavelength, atomic and stellar parameter coverage. To prepare for it, we first compiled multiple literature occurrences of many individual atomic transitions, from several atomic databases of astrophysical interest, and assessed their agreement. In a second step synthetic spectra will be compared against extremely high-quality observed spectra, for a large number of BAFGK spectral type stars, in order to critically evaluate the atomic data of a large number of important stellar lines. Methods: Several atomic repositories were searched and their data retrieved and formatted in a consistent manner. Data entries from all repositories were cross-matched against our initial BRASS atomic line list to find multiple occurrences of the same transition. Where possible we used a new non-parametric cross-match depending only on electronic configurations and total angular momentum values. We also checked for duplicate entries of the same physical transition, within each retrieved repository, using the non-parametric cross-match. Results: We report on the number of cross-matched transitions for each repository and compare their fundamental atomic parameters. We find differences in log(gf) values of up to 2 dex or more. We also find and report that 2% of our line list and Vienna atomic line database retrievals are composed of duplicate transitions. Finally we provide a number of examples of atomic spectral lines with different retrieved literature log(gf) values, and discuss the impact of these uncertain log(gf) values on quantitative spectroscopy. All cross-matched atomic data and duplicate transition pairs are available to download at http://brass.sdf.org

Chromospheric heating during flux emergence in the solar atmosphere

NASA Astrophysics Data System (ADS)

Leenaarts, Jorrit; de la Cruz Rodríguez, Jaime; Danilovic, Sanja; Scharmer, Göran; Carlsson, Mats

2018-04-01

Context. The radiative losses in the solar chromosphere vary from 4 kW m-2 in the quiet Sun, to 20 kW m-2 in active regions. The mechanisms that transport non-thermal energy to and deposit it in the chromosphere are still not understood. Aim. We aim to investigate the atmospheric structure and heating of the solar chromosphere in an emerging flux region. Methods: We have used observations taken with the CHROMIS and CRISP instruments on the Swedish 1-m Solar Telescope in the Ca II K , Ca II 854.2 nm, Hα, and Fe I 630.1 nm and 630.2 nm lines. We analysed the various line profiles and in addition perform multi-line, multi-species, non-local thermodynamic equilibrium (non-LTE) inversions to estimate the spatial and temporal variation of the chromospheric structure. Results: We investigate which spectral features of Ca II K contribute to the frequency-integrated Ca II K brightness, which we use as a tracer of chromospheric radiative losses. The majority of the radiative losses are not associated with localised high-Ca II K-brightness events, but instead with a more gentle, spatially extended, and persistent heating. The frequency-integrated Ca II K brightness correlates strongly with the total linear polarization in the Ca II 854.2 nm, while the Ca II K profile shapes indicate that the bulk of the radiative losses occur in the lower chromosphere. Non-LTE inversions indicate a transition from heating concentrated around photospheric magnetic elements below log τ500 = -3 to a more space-filling and time-persistent heating above log τ500 = -4. The inferred gas temperature at log τ500 = -3.8 correlates strongly with the total linear polarization in the Ca II 854.2 nm line, suggesting that that the heating rate correlates with the strength of the horizontal magnetic field in the low chromosphere. Movies attached to Figs. 1 and 4 are available at http://https://www.aanda.org/

Measured and Modeled Toxicokinetics in Cultured Fish Cells and Application to In Vitro - In Vivo Toxicity Extrapolation

PubMed Central

Stadnicka-Michalak, Julita; Tanneberger, Katrin; Schirmer, Kristin; Ashauer, Roman

2014-01-01

Effect concentrations in the toxicity assessment of chemicals with fish and fish cells are generally based on external exposure concentrations. External concentrations as dose metrics, may, however, hamper interpretation and extrapolation of toxicological effects because it is the internal concentration that gives rise to the biological effective dose. Thus, we need to understand the relationship between the external and internal concentrations of chemicals. The objectives of this study were to: (i) elucidate the time-course of the concentration of chemicals with a wide range of physicochemical properties in the compartments of an in vitro test system, (ii) derive a predictive model for toxicokinetics in the in vitro test system, (iii) test the hypothesis that internal effect concentrations in fish (in vivo) and fish cell lines (in vitro) correlate, and (iv) develop a quantitative in vitro to in vivo toxicity extrapolation method for fish acute toxicity. To achieve these goals, time-dependent amounts of organic chemicals were measured in medium, cells (RTgill-W1) and the plastic of exposure wells. Then, the relation between uptake, elimination rate constants, and log KOW was investigated for cells in order to develop a toxicokinetic model. This model was used to predict internal effect concentrations in cells, which were compared with internal effect concentrations in fish gills predicted by a Physiologically Based Toxicokinetic model. Our model could predict concentrations of non-volatile organic chemicals with log KOW between 0.5 and 7 in cells. The correlation of the log ratio of internal effect concentrations in fish gills and the fish gill cell line with the log KOW was significant (r>0.85, p = 0.0008, F-test). This ratio can be predicted from the log KOW of the chemical (77% of variance explained), comprising a promising model to predict lethal effects on fish based on in vitro data. PMID:24647349

Optimization of a cAMP response element signal pathway reporter system.

PubMed

Shan, Qiang; Storm, Daniel R

2010-08-15

A sensitive cAMP response element (CRE) reporter system is essential for studying the cAMP/protein kinase A/cAMP response element binding protein signal pathway. Here we have tested a few CRE promoters and found one with high sensitivity to external stimuli. Using this optimal CRE promoter and the enhanced green fluorescent protein as the reporter, we have established a CRE reporter cell line. This cell line can be used to study the signal pathway by fluorescent microscope, fluorescence-activated cell analysis and luciferase assay. This cell line's sensitivity to forskolin, using the technique of fluorescence-activated cell sorting, was increased to approximately seven times that of its parental HEK 293 cell line, which is currently the most commonly used cell line in the field for the signal pathway study. Therefore, this newly created cell line is potentially useful for studying the signal pathway's modulators, which generally have weaker effect than its mediators. Our research has also established a general procedure for optimizing transcription-based reporter cell lines, which might be useful in performing the same task when studying many other transcription-based signal pathways. (c) 2010 Elsevier B.V. All rights reserved.

Complexity of line-seru conversion for different scheduling rules and two improved exact algorithms for the multi-objective optimization.

PubMed

Yu, Yang; Wang, Sihan; Tang, Jiafu; Kaku, Ikou; Sun, Wei

2016-01-01

Productivity can be greatly improved by converting the traditional assembly line to a seru system, especially in the business environment with short product life cycles, uncertain product types and fluctuating production volumes. Line-seru conversion includes two decision processes, i.e., seru formation and seru load. For simplicity, however, previous studies focus on the seru formation with a given scheduling rule in seru load. We select ten scheduling rules usually used in seru load to investigate the influence of different scheduling rules on the performance of line-seru conversion. Moreover, we clarify the complexities of line-seru conversion for ten different scheduling rules from the theoretical perspective. In addition, multi-objective decisions are often used in line-seru conversion. To obtain Pareto-optimal solutions of multi-objective line-seru conversion, we develop two improved exact algorithms based on reducing time complexity and space complexity respectively. Compared with the enumeration based on non-dominated sorting to solve multi-objective problem, the two improved exact algorithms saves computation time greatly. Several numerical simulation experiments are performed to show the performance improvement brought by the two proposed exact algorithms.

Blueberry Galaxies: The Lowest Mass Young Starbursts

NASA Astrophysics Data System (ADS)

Yang, Huan; Malhotra, Sangeeta; Rhoads, James E.; Wang, Junxian

2017-09-01

Searching for extreme emission line galaxies allows us to find low-mass metal-poor galaxies that are good analogs of high redshift Lyα emitting galaxies. These low-mass extreme emission line galaxies are also potential Lyman-continuum leakers. Finding them at very low redshifts (z≲ 0.05) allows us to be sensitive to even lower stellar masses and metallicities. We report on a sample of extreme emission line galaxies at z≲ 0.05 (blueberry galaxies). We selected them from SDSS broadband images on the basis of their broadband colors and studied their properties with MMT spectroscopy. From the entire SDSS DR12 photometric catalog, we found 51 photometric candidates. We spectroscopically confirm 40 as blueberry galaxies. (An additional seven candidates are contaminants, and four remain without spectra.) These blueberries are dwarf starburst galaxies with very small sizes (<1 kpc) and very high ionization ([O III]/[O II] ˜ 10-60). They also have some of the lowest stellar masses ({log}(M/{M}⊙ )˜ 6.5{--}7.5) and lowest metallicities (7.1< 12+{log}({{O}}/{{H}})< 7.8) of starburst galaxies. Thus, they are small counterparts to green pea galaxies and high redshift Lyα emitting galaxies.

College residential sleep environment.

PubMed

Sexton-Radek, Kathy; Hartley, Andrew

2013-12-01

College students regularly report increased sleep disturbances as well as concomitant reductions in performance (e.g., academic grades) upon entering college. Sleep hygiene refers to healthy sleep practices that are commonly used as first interventions in sleep disturbances. One widely used practice of this sort involves arranging the sleep environment to minimize disturbances from excessive noise and light at bedtime. Communal sleep situations such as those in college residence halls do not easily support this intervention. Following several focus groups, a questionnaire was designed to gather self-reported information on sleep disturbances in a college population. The present study used The Young Adult Sleep Environment Inventory (YASEI) and sleep logs to investigate the sleep environment of college students living in residential halls. A summary of responses indicated that noise and light are significant sleep disturbances in these environments. Recommendations are presented related to these findings.

An overhead specimen handling system for variable workloads.

PubMed

Eggert, A A; Bowers, K L; Smulka, G J; Emmerich, K A; Iwanski, A L; Quam, E F

1999-02-01

This unique overhead specimen handling system requires virtually no floor space and only a minimal amount of bench space. It uses state-of-the-art conveyors suspended near the ceiling to transport, log-in and sort blood specimens in standard specimen containers. Specimens placed into the system at bench-level bins are automatically singulated and loaded onto cleated conveyors and lifted to the main conveyor belt near the ceiling. The barcoded labels are then read as the containers are rotated under an optical scanner. The specimens are then diverted to the appropriate branch conveyor and lowered back to the bench level by cleated conveyors. The specimen handling system is rapid and accurate, requires no special containers, allows laboratorians to move unimpeded below it, and is inexpensive by automation standards. Studies show no adverse effect upon the specimens.

The effect of the Baton Rouge fault on flow in the Abita aquifer of southeastern Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rapp, T.R.

1993-03-01

The ground-water resources of southern Tangipahoa Parish and adjacent areas were studied to determine their potential for development as an alternative to the Mississippi River as a water supply source for Jefferson Parish, Louisiana. The study area, in southeastern Louisiana, is underlain by eight major aquifers and is crossed by a fault zone, referred to as the Baton Rouge fault. The fault restricts the flow of water in the aquifers of intermediate depth. Data from a test well drilling program and geophysical logs of a nearby oil well indicated that a significant freshwater aquifer that provides water to a nearbymore » municipality was actually the Abita aquifer and not the Covington aquifer, as was previously thought. The Abita aquifer, a shallower aquifer with a lower hydraulic conductivity, had been displaced to a position equivalent to that of the Covington aquifer by the Baton Rouge fault. An additional final test well drilled south of the fault penetrated the leading edge of a wedge-shaped saltwater interface. Analysis of lithologic and geophysical logs indicated that the Abita aquifer has a well-sorted, clean sand at the base of the aquifer and substantial amounts of clay in the top two-thirds of the aquifer. Geophysical logs of oil test wells south of the fault zone indicated that the sand thickens substantially to the south. The thicker sand south of a public supply well that pumps water from the Abita aquifer and the higher hydraulic conductivity of the lower part of the aquifer where the saline water was detected indicate that a much larger percentage of recharge to the public supply well may come from the south than was originally thought.« less

Open-Cellular Co-Base and Ni-Base Superalloys Fabricated by Electron Beam Melting

PubMed Central

Murr, Lawrence; Li, Shujun; Tian, Yuxing; Amato, Krista; Martinez, Edwin; Medina, Frank

2011-01-01

Reticulated mesh samples of Co-29Cr-6Mo alloy and Ni-21Cr-9Mo-4Nb alloy (625) and stochastic foam samples of Co-29Cr-6Mo alloy fabricated by electron beam melting were characterized by optical metallography, and the dynamic stiffness (Young’s modulus) was measured by resonant frequency analysis. The relative stiffness (E/Es) versus relative density (ρ/ρs) plotted on a log-log basis resulted in a fitted straight line with a slope n ≅ 2, consistent with that for ideal open cellular materials. PMID:28879949

(F)UV Spectral Analysis of 15 Hot, Hydrogen-Rich Central Stars of PNe

NASA Astrophysics Data System (ADS)

Ziegler, Marc

2013-07-01

The aim of this thesis was the precise determination of basic stellar parameters and metal abundances for a sample of 15 ionizing stars of gaseous nebulae. Strategic lines of metals for the expected parameter range are located in the ultraviolet (UV) and far-ultraviolet (FUV) range. Thus high-resolution, high-S/N UV and FUV observations obtained with the Hubble Space Telescope (HST) and the Far Ultraviolet Spectroscopic Explorer (FUSE) were used for the analysis. For the calculation of the necessary spectral energy distributions the Tübingen NLTE Model-Atmosphere Package (TMAP) was used. The model atmospheres included most elements from H - Ni in order to account for line-blanketing effects. For each object a small grid of model atmospheres was calculated. As the interstellar medium (ISM) imprints its influence in the Space Telescope Imaging Spectrograph (STIS) and especially the FUSE range, the program OWENS was employed to calculate the interstellar absorption features. Both, the photospheric model spectral energy distribution (SED) as well as the ISM models were combined to enable the identification of most of the observed absorption lines. The analyzed sample covers a range of 70 kK < Teff < 136 kK, and surface gravities from log (g/cm/sec^2) = 5.4 - 7.4, thus representing different stages of stellar evolution. For a large number of elements, abundances were determined for the first time in these objects. Lines of C, N, O, F, Ne, Si, P, S, and Ar allowed to determine the corresponding abundances. For none of the objects lines of Ca, Sc, Ti, and V could be found. Only a few objects were rich in Cr, Mn, Fe, Co, and Ni lines. Most of the analyzed stars exhibited only lines of Fe (ionization stages V - VIII) from the iron-group elements. No signs for gravitational settling (the gravitational force exceeds the radiation pressure and elements begin to sink from the atmosphere into deeper layers) were found. This is expected as the values of the surface gravities of the sample are still too small to start gravitational settling. For the elements C, N, O, Si, P, and S we find increasing abundances with increasing log(Teff^4/g), while the abundances for Ar and Fe decrease. The latter is unexpected as the higher the Teff^4/g ratio, the more the radiative force dominates the gravitational force and, thus, the elements should be kept in the atmosphere. The determined abundances were compared with previous literature values, with abundances predicted from diusion calculations, with abundances from Asymptotic Giant Branch (AGB) nucleosynthesis calculations, and, if available, with abundances found for the corresponding nebulae. The agreement was of mixed quality. The derived Teff and log g values confirmed some literature values while others had to be revised (e.g. for LSS 1362 and NGC1360). However, most of them agree with the previous literature values within the error limits. No difference in Teff can be found for DAO and O(H)-type stars, but O(H)-type stars have a lower log g (5.4 - 6.0) compared to the DAOs (6.5 - 7.4). The exception is the O(H)-type central star of the planetary nebula (CSPN) of Lo 1 with log g = 7.0. A comparison of the positions of each object with stellar evolutionary tracks for post-AGB stars in the log Teff - log g diagram lead to the respective stellar masses. The derived mean mass of the analyzed sample (M = 0.536 ± 0.023 Msol) agrees within the error limits with the expected mean mass for these objects. In the literature M = 0.638 - 0.145 Msol can be found for DA-type white dwarfs, the immediate successors of DAO-type white dwarfs. For two objects (A 35, Sh 2-174) extremely low masses were found. For A35 the derived mass (M_A35 = 0.523 ± 0.05Msol) lies at the lower end of possible masses predicted for post-AGB stars. The very low mass of Sh 2-174 (M_Sh 2-174 = 0.395 ± 0.05Msol) points at Sh 2-174 being a post-extended horizontal branch (EHB) star and not a CSPN. If a stellar mass is too low, it is impossible for the star to reach the thermally pulsing AGB phase and, thus, to develope a planetary nebula (PN). Post-EHB stars evolve directly from the Horizontal Branch (HB) to the white dwarf (WD) cooling sequence. The low masses for A35 and Sh 2-174 support literature works that classify the two corresponding nebulae as ionized H II regions and not as PNe.

Space Reclamation for Uncoordinated Checkpointing in Message-Passing Systems. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Wang, Yi-Min

1993-01-01

Checkpointing and rollback recovery are techniques that can provide efficient recovery from transient process failures. In a message-passing system, the rollback of a message sender may cause the rollback of the corresponding receiver, and the system needs to roll back to a consistent set of checkpoints called recovery line. If the processes are allowed to take uncoordinated checkpoints, the above rollback propagation may result in the domino effect which prevents recovery line progression. Traditionally, only obsolete checkpoints before the global recovery line can be discarded, and the necessary and sufficient condition for identifying all garbage checkpoints has remained an open problem. A necessary and sufficient condition for achieving optimal garbage collection is derived and it is proved that the number of useful checkpoints is bounded by N(N+1)/2, where N is the number of processes. The approach is based on the maximum-sized antichain model of consistent global checkpoints and the technique of recovery line transformation and decomposition. It is also shown that, for systems requiring message logging to record in-transit messages, the same approach can be used to achieve optimal message log reclamation. As a final topic, a unifying framework is described by considering checkpoint coordination and exploiting piecewise determinism as mechanisms for bounding rollback propagation, and the applicability of the optimal garbage collection algorithm to domino-free recovery protocols is demonstrated.

78 FR 34653 - Proposed Information Collection; Comment Request; Northeast Multispecies Days-at-Sea Leasing Program

Federal Register 2010, 2011, 2012, 2013, 2014

2013-06-10

... electronically by logging into their personal fish-on-line accounts at https://www.nero.noaa.gov/NMFSlogin/login/login and clicking on the Days At Sea Leasing section. III. Data OMB Control Number: 0648-0475. Form...

A multi-objective genetic algorithm for a mixed-model assembly U-line balancing type-I problem considering human-related issues, training, and learning

NASA Astrophysics Data System (ADS)

Rabbani, Masoud; Montazeri, Mona; Farrokhi-Asl, Hamed; Rafiei, Hamed

2016-12-01

Mixed-model assembly lines are increasingly accepted in many industrial environments to meet the growing trend of greater product variability, diversification of customer demands, and shorter life cycles. In this research, a new mathematical model is presented considering balancing a mixed-model U-line and human-related issues, simultaneously. The objective function consists of two separate components. The first part of the objective function is related to balance problem. In this part, objective functions are minimizing the cycle time, minimizing the number of workstations, and maximizing the line efficiencies. The second part is related to human issues and consists of hiring cost, firing cost, training cost, and salary. To solve the presented model, two well-known multi-objective evolutionary algorithms, namely non-dominated sorting genetic algorithm and multi-objective particle swarm optimization, have been used. A simple solution representation is provided in this paper to encode the solutions. Finally, the computational results are compared and analyzed.

Iterative sorting reveals CD133+ and CD133- melanoma cells as phenotypically distinct populations.

PubMed

Grasso, Carole; Anaka, Matthew; Hofmann, Oliver; Sompallae, Ramakrishna; Broadley, Kate; Hide, Winston; Berridge, Michael V; Cebon, Jonathan; Behren, Andreas; McConnell, Melanie J

2016-09-09

The heterogeneity and tumourigenicity of metastatic melanoma is attributed to a cancer stem cell model, with CD133 considered to be a cancer stem cell marker in melanoma as well as other tumours, but its role has remained controversial. We iteratively sorted CD133+ and CD133- cells from 3 metastatic melanoma cell lines, and observed tumourigenicity and phenotypic characteristics over 7 generations of serial xeno-transplantation in NOD/SCID mice. We demonstrate that iterative sorting is required to make highly pure populations of CD133+ and CD133- cells from metastatic melanoma, and that these two populations have distinct characteristics not related to the cancer stem cell phenotype. In vitro, gene set enrichment analysis indicated CD133+ cells were related to a proliferative phenotype, whereas CD133- cells were of an invasive phenotype. However, in vivo, serial transplantation of CD133+ and CD133- tumours over 7 generations showed that both populations were equally able to initiate and propagate tumours. Despite this, both populations remained phenotypically distinct, with CD133- cells only able to express CD133 in vivo and not in vitro. Loss of CD133 from the surface of a CD133+ cell was observed in vitro and in vivo, however CD133- cells derived from CD133+ retained the CD133+ phenotype, even in the presence of signals from the tumour microenvironment. We show for the first time the necessity of iterative sorting to isolate pure marker-positive and marker-negative populations for comparative studies, and present evidence that despite CD133+ and CD133- cells being equally tumourigenic, they display distinct phenotypic differences, suggesting CD133 may define a distinct lineage in melanoma.

Sorting of amphiphile membrane components in curvature and composition gradients

NASA Astrophysics Data System (ADS)

Tian, Aiwei

Phase and shape heterogeneities in biomembranes are of functional importance. However, it is difficult to elucidate the roles membrane heterogeneities play in maintaining cellular function due to the complexity of biomembranes. Therefore, investigations of phase behavior and composition/curvature coupling in lipid and polymer model membranes offer some advantages. In this thesis, phase properties in lipid and polymer giant vesicles were studied. Line tension at the fluid/fluid phase boundary of giant lipid unilamellar vesicles was determined directly by micropipette aspiration, and found to be composition-dependent. Dynamics of calcium-induced domains within polyanionic vesicles subject to chemical stimuli were investigated, which revealed the strength of molecular interaction and suggested applications in triggered delivery. In addition, curvature sorting of lipids and proteins was examined. Lipid membrane tethers were pulled from giant unilamellar vesicles using two micropipettes and a bead. Tether radius can be controlled and measured in this system. By examining fluorescence intensity of labeled molecules as a function of curvature, we found that DiI dyes (lipid analogues with spontaneous curvatures) had no curvature preference down to radii of 10 nm. Theoretical calculation predicted that the distribution of small lipids was dominated by entropy instead of bending energy. However protein Cholera toxin subunit B was efficiently sorted away from the high positive curvature due to its negative spontaneous curvature. Bending stiffness was determined to decrease as curvature increased in homogeneous membranes with ternary lipid mixtures near a critical consulate point, revealing the strong preferential intermolecular interactions of such mixtures. In addition, diffusion controlled domain growth was observed in tethers pulled from phase-separated vesicles, which provides a new dynamic sorting principle for lipids and proteins in curvature gradients.

Simulating the effect of water management decisions on groundwater flow and quality in the Kyzylkum Irrigation Scheme, Kazakhstan

NASA Astrophysics Data System (ADS)

Naudascher, R. M.; Marti, B. S.; Siegfried, T.; Wolfgang, K.; Anselm, K.

2017-12-01

The Kyzylkum Irrigation Scheme lies north of the Chardara reservoir on the banks of the river Syr Darya in South Kazakhstan. It was designed as a model Scheme and developed to a size of 74'000 ha during Soviet times for rice and cotton production. However, since the 1990s only very limited funds were available for maintenance and as a result, problems like water logging and salinization of soils and groundwater are now omnipresent in the scheme. The aim of this study was to develop a numerical groundwater flow model for the region in Modflow and to evaluate the effect of various infrastructure investments on phreatic evaporation (a major driver for soil salinization). Decadal groundwater observation data from 2011 to 2015 were used to calibrate the annual model and to validate the monthly model. Scenarios simulated were (partial) lining of main and/or secondary and tertiary canal system, improvement of drainage via horizontal canals or pumps, combinations of these and a joint groundwater-surface-water use scenario. Although the annual average model is sufficient to evaluate the yearly water balance, the transient model is a prerequisite for analysing measures against water logging and salinization, both of which feature strong seasonality. The transient simulation shows that a combination of leakage reduction (lining of canals) and drainage improvement measures is needed to lower the groundwater levels enough to avoid phreatic evaporation. To save water, joint surface water and groundwater irrigation can be applied in areas where groundwater salinity is low enough but without proper lining of canals, it is not sufficient to mitigate the ongoing soil degradation due to salinization and water logging.

Treatment carryover impacts on effectiveness of intraocular pressure lowering agents, estimated by a discrete event simulation model.

PubMed

Denis, P; Le Pen, C; Umuhire, D; Berdeaux, G

2008-01-01

To compare the effectiveness of two treatment sequences, latanoprost-latanoprost timolol fixed combination (L-LT) versus travoprost-travoprost timolol fixed combination (T-TT), in the treatment of open-angle glaucoma (OAG) or ocular hypertension (OHT). A discrete event simulation (DES) model was constructed. Patients with either OAG or OHT were treated first-line with a prostaglandin, either latanoprost or travoprost. In case of treatment failure, patients were switched to the specific prostaglandin-timolol sequence LT or TT. Failure was defined as intraocular pressure higher than or equal to 18 mmHg at two visits. Time to failure was estimated from two randomized clinical trials. Log-rank tests were computed. Linear functions after log-log transformation were used to model time to failure. The time horizon of the model was 60 months. Outcomes included treatment failure and disease progression. Sensitivity analyses were performed. Latanoprost treatment resulted in more treatment failures than travoprost (p<0.01), and LT more than TT (p<0.01). At 60 months, the probability of starting a third treatment line was 39.2% with L-LT versus 29.9% with T-TT. On average, L-LT patients developed 0.55 new visual field defects versus 0.48 for T-TT patients. The probability of no disease progression at 60 months was 61.4% with L-LT and 65.5% with T-TT. Based on randomized clinical trial results and using a DES model, the T-TT sequence was more effective at avoiding starting a third line treatment than the L-LT sequence. T-TT treated patients developed less glaucoma progression.

Clinical Impact of the Number of Treatment Cycles in First-Line Docetaxel for Patients With Metastatic Castration-Resistant Prostate Cancer.

PubMed

Kongsted, Per; Svane, Inge Marie; Lindberg, Henriette; Sengeløv, Lisa

2017-04-01

We investigated the impact of the number of docetaxel cycles administered in patients with metastatic castration-resistant prostate cancer (mCRPC) treated with first-line chemotherapy. Charts from 421 consecutive patients who initiated standard treatment with docetaxel-based chemotherapy (75 mg/m 2 every 3 weeks) between 2007 and 2013 were reviewed. Patients who received < 6 cycles of docetaxel were excluded from the analysis. Remaining patients were divided into 2 groups on the basis of whether or not ≥ 9 cycles of docetaxel were administered (n = 108 and 184, respectively). Reasons for treatment discontinuation and postdocetaxel treatments were registered. Prostate-specific antigen (PSA) responses were defined as a confirmed ≥ 50% decrease in baseline PSA levels. Overall survival (OS) was calculated from start of therapy using the Kaplan-Meier method. Cox proportional hazards were calculated to estimate the effect of clinical variables on OS. OS was longer in patients treated with ≥ 9 cycles of docetaxel (21.9 months vs. 17.2 months; P < .0001, log rank). Survival also favored patients treated with ≥ 9 cycles of docetaxel when only patients ending docetaxel because of toxicity or treatment conclusion (22.3 vs. 19.4 months; P = .048, log rank) or patients who achieved a PSA response (22.3 vs. 18.7 months; P = .012, log rank) were evaluated. mCRPC-related prognostic factors and patients who received ≥ 1 subsequent line of therapy post-docetaxel were well balanced. On the basis of our retrospective findings, a superior OS was found in patients treated with ≥ 9 cycles of docetaxel when adjusting for known prognostic factors. Dose reductions might increase the number of docetaxel cycles administered. Copyright © 2016 Elsevier Inc. All rights reserved.

Exploration of the psychophysics of a motion displacement hyperacuity stimulus.

PubMed

Verdon-Roe, Gay Mary; Westcott, Mark C; Viswanathan, Ananth C; Fitzke, Frederick W; Garway-Heath, David F

2006-11-01

To explore the summation properties of a motion-displacement hyperacuity stimulus with respect to stimulus area and luminance, with the goal of applying the results to the development of a motion-displacement test (MDT) for the detection of early glaucoma. A computer-generated line stimulus was presented with displacements randomized between 0 and 40 minutes of arc (min arc). Displacement thresholds (50% seen) were compared for stimuli of equal area but different edge length (orthogonal to the direction of motion) at four retinal locations. Also, MDT thresholds were recorded at five values of Michelson contrast (25%-84%) for each of five line lengths (11-128 min arc) at a single nasal location (-27,3). Frequency-of-seeing (FOS) curves were generated and displacement thresholds and interquartile ranges (IQR, 25%-75% seen) determined by probit analysis. Equivalent displacement thresholds were found for stimuli of equal area but half the edge length. Elevations of thresholds and IQR were demonstrated as line length and contrast were reduced. Equivalent displacement thresholds were also found for stimuli of equivalent energy (stimulus area x [stimulus luminance - background luminance]), in accordance with Ricco's law. There was a linear relationship (slope -0.5) between log MDT threshold and log stimulus energy. Stimulus area, rather than edge length, determined displacement thresholds within the experimental conditions tested. MDT thresholds are linearly related to the square root of the total energy of the stimulus. A new law, the threshold energy-displacement (TED) law, is proposed to apply to MDT summation properties, giving the relationship T = K logE where, T is the MDT threshold, Kis the constant, and E is the stimulus energy.

Beryllium Abundances of Six Halo Stars

NASA Astrophysics Data System (ADS)

Thorburn, J. A.; Hobbs, L. M.

1996-05-01

High signal-to-noise (S/N≍80), high-resolution (R≍25 000) spectra of six warm halo stars have been obtained in the Be II λ3130 region. Beryllium abundances derived through spectrum synthesis are generally consistent with [Be/Fe]≍0 and probably do not support the simplest models of cosmic-ray nucleosynthesis. Alternative scenarios whereby energetic C, N, and O nuclei collide with ambient He nuclei-rather than the converse-are more compatible with the data. However, these observations constrain net Be production only. If Galactic astration of Be is important, then Be production mechanisms must be proportionally more efficient. In the case of the near twin stars HD 94028 and HD 194598, log(Be/H) differs by 0.3 dex despite effectively identical Li abundances. A difference in initial Be abundance rather than stellar depletion is proposed to account for the discrepancy. Our Be abundances are typically ˜0.3 dex lower than those reported by Boesgaard & King [Al, 106, 2309 (1993)] for five stars in common. The disparity in Be abundance scales is due to the combined influences of differences in assigned stellar parameters and overestimated Be ii λ3131.066 line strengths in the Boesgaard & King study. Systematic errors in published Be abundances may be greater than has previously been suggested. A consistency check of the line list used for the synthesis reveals an unidentified blending feature of moderate strength slightly blueward of λ3131.066 in the Sun. Results of the present investigation are not significantly influenced by the ambiguous identity of the contaminating feature. However, studies which include cooler, more metal-rich stars may, as a consequence of neglecting or improperly identifying this line, report incorrect slopes of log(Be/H) vs [Fe/H] or erroneously large scatter in log(Be/H).

TH-EF-BRA-06: A Novel Retrospective 3D K-Space Sorting 4D-MRI Technique Using a Radial K-Space Acquisition MRI Sequence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Y; Subashi, E; Yin, F

Purpose: Current retrospective 4D-MRI provides superior tumor-to-tissue contrast and accurate respiratory motion information for radiotherapy motion management. The developed 4D-MRI techniques based on 2D-MRI image sorting require a high frame-rate of the MR sequences. However, several MRI sequences provide excellent image quality but have low frame-rate. This study aims at developing a novel retrospective 3D k-space sorting 4D-MRI technique using radial k-space acquisition MRI sequences to improve 4D-MRI image quality and temporal-resolution for imaging irregular organ/tumor respiratory motion. Methods: The method is based on a RF-spoiled, steady-state, gradient-recalled sequence with minimal echo time. A 3D radial k-space data acquisition trajectorymore » was used for sampling the datasets. Each radial spoke readout data line starts from the 3D center of Field-of-View. Respiratory signal can be extracted from the k-space center data point of each spoke. The spoke data was sorted based on its self-synchronized respiratory signal using phase sorting. Subsequently, 3D reconstruction was conducted to generate the time-resolved 4D-MRI images. As a feasibility study, this technique was implemented on a digital human phantom XCAT. The respiratory motion was controlled by an irregular motion profile. To validate using k-space center data as a respiratory surrogate, we compared it with the XCAT input controlling breathing profile. Tumor motion trajectories measured on reconstructed 4D-MRI were compared to the average input trajectory. The mean absolute amplitude difference (D) was calculated. Results: The signal extracted from k-space center data matches well with the input controlling respiratory profile of XCAT. The relative amplitude error was 8.6% and the relative phase error was 3.5%. XCAT 4D-MRI demonstrated a clear motion pattern with little serrated artifacts. D of tumor trajectories was 0.21mm, 0.23mm and 0.23mm in SI, AP and ML directions, respectively. Conclusion: A novel retrospective 3D k-space sorting 4D-MRI technique has been developed and evaluated on human digital phantom. NIH (1R21CA165384-01A1)« less

Differential expression of CD44 and CD24 markers discriminates the epitheliod from the fibroblastoid subset in a sarcomatoid renal carcinoma cell line: evidence suggesting the existence of cancer stem cells in both subsets as studied with sorted cells.

PubMed

Hsieh, Chin-Hsuan; Hsiung, Shih-Chieh; Yeh, Chi-Tai; Yen, Chih-Feng; Chou, Yah-Huei Wu; Lei, Wei-Yi; Pang, See-Tong; Chuang, Cheng-Keng; Liao, Shuen-Kuei

2017-02-28

Epithelioid and fibroblastoid subsets coexist in the human sarcomatoid renal cell carcinoma (sRCC) cell line, RCC52, according to previous clonal studies. Herein, using monoclonal antibodies to CD44 and CD24 markers, we identified and isolated these two populations, and showed that CD44bright/CD24dim and CD44bright/CD24bright phenotypes correspond to epithelioid and fibroblastoid subsets, respectively. Both sorted subsets displayed different levels of tumorigenicity in xenotransplantation, indicating that each harbored its own cancer stem cells (CSCs). The CD44bright/CD24bright subset, associated with higher expression of MMP-7, -8 and TIMP-1 transcripts, showed greater migratory/invasive potential than the CD44bright/CD24dim subset, which was associated with higher expression of MMP-2, -9 and TIMP-2 transcripts. Both subsets differentially expressed stemness gene products c-Myc, Oct4A, Notch1, Notch2 and Notch3, and the RCC stem cell marker, CD105 in 4-5% of RCC52 cells. These results suggest the presence of CSCs in both sRCC subsets for the first time and should therefore be considered potential therapeutic targets for this aggressive malignancy.

[Autologous regulatory T cells can suppress the proliferation of lymphoma cell line in vitro].

PubMed

Ying, Zhi-Tao; Guo, Jun; Ren, Jun; Kong, Yan; Yuan, Zhi-Hong; Liu, Xi-Juan; Zhang, Chen; Zheng, Wen; Song, Yu-Qin; Zhang, Yun-Tao; Zhu, Jun

2009-06-01

This study was aimed to investigate the suppressive effect of regulatory T (Treg) cells on the T cell lymphoma EL4 cell line and to explore its mechanism. C57BL/6 Mouse Treg cells were isolated by MACS (magnetic cell sorting). The purity and the expression of Foxp3 were detected by flow cytometry. The suppressive effect of sorted Treg cells on EL4 cells was detected by MTT assay. The secretion of TGF-beta1 and IL-10 was examined by enzyme-linked immunosorbent assay (ELISA). The results showed that CD4(+)CD25(+) T cells could be successfully isolated by MACS with the purity reaching 91.6% and the expression level of Foxp3 was 78.9%. The ratio of viable cells was more than 95%. Regulatory T cells could suppress the proliferation of EL4 cells effectively in the presence of antigen presenting cells (APCs). And the suppressive effect was most significant at 1:1 ratio. In addition, the suppression still existed without APCs. TGF-beta1 and IL-10 could not be detected by ELISA. It is concluded that the Treg cells can suppress T lymphoma cell in vitro. The suppressive effect of Treg cells works in dose-dependent manner, but not in cytokine-dependent manner. The mechanism of this suppression may take effect through cell-cell contact.

Performance on the Wisconsin card-sorting test and serum levels of glial cell line-derived neurotrophic factor in patients with major depressive disorder.

PubMed

Zhang, Xiaobin; Ru, Bu; Sha, Weiwei; Xin, Wang; Zhou, Honghui; Zhang, Yumei

2014-09-01

Some evidence suggests that neurotrophic growth factor systems might be involved in the etiology of major depressive disorder (MDD). Glial cell line-derived neurotrophic factor (GDNF) is a neurotrophic factor from the transforming growth factor-β family that plays a role in the development and function of the brain. This study aimed to test whether GDNF in serum was abnormal in MDD, and whether it was related to the cognitive impairment of MDD. Serum GDNF levels in MDD patients (n = 32) and normal controls (n = 32) were measured with the enzyme-linked immunosorbent assay method. All subjects were assessed for performance on the Wisconsin card-sorting test (WCST). Performance on the WCST in MDD patients was significantly poorer than that in controls. Serum GDNF levels in MDD patients were significantly decreased compared to that of the control subjects (P < 0.001). Furthermore, the decrease in the serum GDNF levels positively correlated with performance in the WCST-% CONC and negatively with performance in the WCST-P in MDD patients. The findings suggest that MDD patients have extensive impairments of executive functioning, and lower serum GDNF might be involved in the pathogenesis of MDD, which may be associated with the cognitive dysfunction in MDD patients. © 2014 Wiley Publishing Asia Pty Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kulkarni, Varsha P.; Som, Debopam; Morrison, Sean

We report Keck/Echellette Spectrograph and Imager and Very Large Telescope/Ultraviolet-Visual Echelle Spectrograph observations of three super-damped Lyα quasar absorbers with H i column densities log N{sub H} {sub i} ≥ 21.7 at redshifts 2 ≲ z ≲ 2.5. All three absorbers show similar metallicities (∼−1.3 to −1.5 dex), and dust depletion of Fe, Ni, and Mn. Two of the absorbers show supersolar [S/Zn] and [Si/Zn]. We combine our results with those for other damped Lyα a absorbers (DLAs) to examine trends between N{sub H} {sub i}, metallicity, and dust depletion. A larger fraction of the super-DLAs lie close to ormore » above the line [X/H] = 20.59 − log N{sub H} {sub i} in the metallicity versus N{sub H} {sub i} plot, compared to the less gas-rich DLAs, suggesting that super-DLAs are more likely to be rich in molecules. Unfortunately, our data for Q0230−0334 and Q0743+1421 do not cover H{sub 2} absorption lines. For Q1418+0718, some H{sub 2} lines are covered, but not detected. CO is not detected in any of our absorbers. For DLAs with log N{sub H} {sub i} < 21.7, we confirm strong correlation between metallicity and Fe depletion, and find a correlation between metallicity and Si depletion. For super-DLAs, these correlations are weaker or absent. The absorbers toward Q0230−0334 and Q1418+0718 show potential detections of weak Lyα emission, implying star formation rates of ∼1.6 and ∼0.7 M{sub ⊙} yr{sup −1}, respectively (ignoring dust extinction). Upper limits on the electron densities from C ii*/C ii or Si ii*/Si ii are low, but are higher than the median values in less gas-rich DLAs. Finally, systems with log N{sub H} {sub i} > 21.7 may have somewhat narrower velocity dispersions Δv{sub 90} than the less gas-rich DLAs, and may arise in cooler and/or less turbulent gas.« less

Chromosomal breaks at FRA18C: association with reduced DOK6 expression, altered oncogenic signaling and increased gastric cancer survival.

PubMed

Leong, Siew Hong; Lwin, Kyaw Myo; Lee, Sze Sing; Ng, Wai Har; Ng, Kia Min; Tan, Soo Yong; Ng, Bee Ling; Carter, Nigel P; Tang, Carol; Lian Kon, Oi

2017-01-01

Chromosomal rearrangements are common in cancer. More than 50% occur in common fragile sites and disrupt tumor suppressors. However, such rearrangements are not known in gastric cancer. Here we report recurrent 18q2 breakpoints in 6 of 17 gastric cancer cell lines. The rearranged chromosome 18, t(9;18), in MKN7 cells was flow sorted and identified by reverse chromosome painting. High-resolution tiling array hybridization mapped breakpoints to DOK6 (docking protein 6) intron 4 in FRA18C (18q22.2) and an intergenic region in 9q22.2. The same rearrangement was detected by FISH in 22% of 99 primary gastric cancers. Intron 4 truncation was associated with reduced DOK6 transcription. Analysis of The Cancer Genome Atlas stomach adenocarcinoma cohort showed significant correlation of DOK6 expression with histological and molecular phenotypes. Multiple oncogenic signaling pathways (gastrin-CREB, NGF-neurotrophin, PDGF, EGFR, ERK, ERBB4, FGFR1, RAS, VEGFR2 and RAF/MAP kinase) known to be active in aggressive gastric cancers were strikingly diminished in gastric cancers with low DOK6 expression. Median survival of patients with low DOK6 -expressing tumors was 2100 days compared with 533 days in patients with high DOK6 -expressing tumors (log-rank P  = 0.0027). The level of DOK6 expression in tumors predicted patient survival independent of TNM stage. These findings point to new functions of human DOK6 as an adaptor that interacts with diverse molecular components of signaling pathways. Our data suggest that DOK6 expression is an integrated biomarker of multiple oncogenic signals in gastric cancer and identify FRA18C as a new cancer-associated fragile site.

Interpretation of a compositional time series

NASA Astrophysics Data System (ADS)

Tolosana-Delgado, R.; van den Boogaart, K. G.

2012-04-01

Common methods for multivariate time series analysis use linear operations, from the definition of a time-lagged covariance/correlation to the prediction of new outcomes. However, when the time series response is a composition (a vector of positive components showing the relative importance of a set of parts in a total, like percentages and proportions), then linear operations are afflicted of several problems. For instance, it has been long recognised that (auto/cross-)correlations between raw percentages are spurious, more dependent on which other components are being considered than on any natural link between the components of interest. Also, a long-term forecast of a composition in models with a linear trend will ultimately predict negative components. In general terms, compositional data should not be treated in a raw scale, but after a log-ratio transformation (Aitchison, 1986: The statistical analysis of compositional data. Chapman and Hill). This is so because the information conveyed by a compositional data is relative, as stated in their definition. The principle of working in coordinates allows to apply any sort of multivariate analysis to a log-ratio transformed composition, as long as this transformation is invertible. This principle is of full application to time series analysis. We will discuss how results (both auto/cross-correlation functions and predictions) can be back-transformed, viewed and interpreted in a meaningful way. One view is to use the exhaustive set of all possible pairwise log-ratios, which allows to express the results into D(D - 1)/2 separate, interpretable sets of one-dimensional models showing the behaviour of each possible pairwise log-ratios. Another view is the interpretation of estimated coefficients or correlations back-transformed in terms of compositions. These two views are compatible and complementary. These issues are illustrated with time series of seasonal precipitation patterns at different rain gauges of the USA. In this data set, the proportion of annual precipitation falling in winter, spring, summer and autumn is considered a 4-component time series. Three invertible log-ratios are defined for calculations, balancing rainfall in autumn vs. winter, in summer vs. spring, and in autumn-winter vs. spring-summer. Results suggest a 2-year correlation range, and certain oscillatory behaviour in the last balance, which does not occur in the other two.

Study of the partition coefficients Kp/f of seven model migrants from LDPE polymer in contact with food simulants.

PubMed

Paseiro-Cerrato, Rafael; Tongchat, Chinawat; Franz, Roland

2016-05-01

This study evaluated the influence of parameters such as temperature and type of low-density polyethylene (LDPE) film on the log Kp/f values of seven model migrants in food simulants. Two different types of LDPE films contaminated by extrusion and immersion were placed in contact with three food simulants including 20% ethanol, 50% ethanol and olive oil under several time-temperature conditions. Results suggest that most log Kp/f values are little affected by these parameters in this study. In addition, the relation between log Kp/f and log Po/w was established for each food simulant and regression lines, as well as correlation coefficients, were calculated. Correlations were compared with data from real foodstuffs. Data presented in this study could be valuable in assigning certain foods to particular food simulants as well as predicting the mass transfer of potential migrants into different types of food or food simulants, avoiding tedious and expensive laboratory analysis. The results could be especially useful for regulatory agencies as well as for the food industry.

AN ANALYSIS OF THE PULSATING STAR SDSS J160043.6+074802.9 USING NEW NON-LTE MODEL ATMOSPHERES AND SPECTRA FOR HOT O SUBDWARFS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Latour, M.; Fontaine, G.; Brassard, P.

2011-06-01

We first present our new grids of model atmospheres and spectra for hot subdwarf O (sdO) stars: standard non-LTE (NLTE) H+He models with no metals, NLTE line-blanketed models with C+N+O, and NLTE line-blanketed models with C+N+O+Fe. Using hydrogen and helium lines in the optical range, we make detailed comparisons between theoretical spectra of different grids in order to characterize the line-blanketing effects of metals. We find these effects to be dependent on both the effective temperature and the surface gravity. Moreover, we find that the helium abundance also influences in an important way the effects of line blanketing on themore » resulting spectra. We further find that the addition of Fe (solar abundance) leads only to incremental effects on the atmospheric structure as compared with the case where the metallicity is defined by C+N+O (solar abundances). We use our grids to perform fits on a 9 A resolution, high signal-to-noise ratio ({approx}300 blueward of 5000 A) optical spectrum of SDSS J160043.6+074802.9, the only known pulsating sdO star. Our best and most reliable result is based on the fit achieved with NLTE synthetic spectra that include C, N, O, and Fe in solar abundances, leading to the following parameters: T{sub eff} = 68,500 {+-} 1770 K, log g = 6.09 {+-} 0.07, and log N(He)/N(H) = -0.64 {+-} 0.05 (formal fitting errors only). This combination of parameters, particularly the comparatively high helium abundance, implies that line-blanketing effects due to metals are not very large in the atmosphere of this sdO star.« less

THE NATURE OF A GALAXY ALONG THE SIGHT LINE TO PKS 0454+039

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takamiya, Marianne; Chun, Mark; Kulkarni, Varsha P.

2012-10-01

We report on the properties of a faint blue galaxy (G1) along the line of sight to the QSO PKS 0454+039 from spectroscopic and imaging data. We measured emission lines of H{alpha}, [S II] {lambda}{lambda}6716, 6732, and [N II] {lambda}6584 in the spectrum of G1 obtained with the Gemini/GMOS instrument. The spectroscopic redshift of G1 is z = 0.0715 {+-} 0.0002. From the extinction-corrected H{alpha} flux, we determine a modest star formation rate of SFR = 0.07 M{sub Sun} yr{sup -1} and a specific SFR of log (sSFR) -8.4. Using three different abundance indicators, we determine a nebular abundance 12more » + log (O/H) ranging from 7.6 to 8.2. Based on the velocity dispersion inferred from the emission line widths and the observed surface brightness profile, we estimate the virial mass of G1 to be M{sub vir} {approx} 6.7 Multiplication-Sign 10{sup 9} M{sub Sun} with an effective radius of 2.0 kpc. We estimate the stellar mass of G1 using spectral energy distribution fitting to be M{sub *} Almost-Equal-To 1.2 Multiplication-Sign 10{sup 7} M{sub Sun} and an r'-luminosity of L{sub r'} = 1.5x10{sup 8} L{sub Sun }. Overall, G1 is a faint, low-mass, low-metallicity Im/H II galaxy. We also report on the line flux limits of another source (G3) which is the most likely candidate for the absorber system at z = 0.8596. From the spectrum of the QSO itself, we report a previously undetected Mg II {lambda}{lambda}2796, 2803 absorption line system at z = 1.245.« less

Non-Small Cell Lung Cancer Cells Expressing CD44 Are Enriched for Stem Cell-Like Properties

PubMed Central

Leung, Elaine Lai-Han; Fiscus, Ronald R.; Tung, James W.; Tin, Vicky Pui-Chi; Cheng, Lik Cheung; Sihoe, Alan Dart-Loon; Fink, Louis M.; Ma, Yupo; Wong, Maria Pik

2010-01-01

Background The cancer stem cell theory hypothesizes that cancers are perpetuated by cancer stem cells (CSC) or tumor initiating cells (TIC) possessing self-renewal and other stem cell-like properties while differentiated non-stem/initiating cells have a finite life span. To investigate whether the hypothesis is applicable to lung cancer, identification of lung CSC and demonstration of these capacities is essential. Methodology/Principal Finding The expression profiles of five stem cell markers (CD34, CD44, CD133, BMI1 and OCT4) were screened by flow cytometry in 10 lung cancer cell lines. CD44 was further investigated by testing for in vitro and in vivo tumorigenecity. Formation of spheroid bodies and in vivo tumor initiation ability were demonstrated in CD44+ cells of 4 cell lines. Serial in vivo tumor transplantability in nude mice was demonstrated using H1299 cell line. The primary xenografts initiated from CD44+ cells consisted of mixed CD44+ and CD44− cells in similar ratio as the parental H1299 cell line, supporting in vivo differentiation. Semi-quantitative Real-Time PCR (RT-PCR) showed that both freshly sorted CD44+ and CD44+ cells derived from CD44+-initiated tumors expressed the pluripotency genes OCT4/POU5F1, NANOG, SOX2. These stemness markers were not expressed by CD44− cells. Furthermore, freshly sorted CD44+ cells were more resistant to cisplatin treatment with lower apoptosis levels than CD44− cells. Immunohistochemical analysis of 141 resected non-small cell lung cancers showed tumor cell expression of CD44 in 50.4% of tumors while no CD34, and CD133 expression was observed in tumor cells. CD44 expression was associated with squamous cell carcinoma but unexpectedly, a longer survival was observed in CD44-expressing adenocarcinomas. Conclusion/Significance Overall, our results demonstrated that stem cell-like properties are enriched in CD44-expressing subpopulations of some lung cancer cell lines. Further investigation is required to clarify the role of CD44 in tumor cell renewal and cancer propagation in the in vivo environment. PMID:21124918

Controlling the motion of multiple objects on a Chladni plate

NASA Astrophysics Data System (ADS)

Zhou, Quan; Sariola, Veikko; Latifi, Kourosh; Liimatainen, Ville

2016-09-01

The origin of the idea of moving objects by acoustic vibration can be traced back to 1787, when Ernst Chladni reported the first detailed studies on the aggregation of sand onto nodal lines of a vibrating plate. Since then and to this date, the prevailing view has been that the particle motion out of nodal lines is random, implying uncontrollability. But how random really is the out-of-nodal-lines motion on a Chladni plate? Here we show that the motion is sufficiently regular to be statistically modelled, predicted and controlled. By playing carefully selected musical notes, we can control the position of multiple objects simultaneously and independently using a single acoustic actuator. Our method allows independent trajectory following, pattern transformation and sorting of multiple miniature objects in a wide range of materials, including electronic components, water droplets loaded on solid carriers, plant seeds, candy balls and metal parts.

Intracorneal ring segments implantation followed by same-day topography-guided PRK and corneal collagen CXL in low to moderate keratoconus.

PubMed

Al-Tuwairqi, Waleed; Sinjab, Mazen M

2013-01-01

To evaluate the safety and efficacy of intrastromal corneal ring segments (ICRS) implantation followed by same-day topography-guided photorefractive keratectomy (PRK) and ultraviolet-A/riboflavin collagen cross-linking (CXL) in patients with low to moderate keratoconus. Patients with low to moderate keratoconus and contact lens intolerance were included in the study. All patients first underwent femtosecond laser-enabled placement of ICRS (Keraring, Mediphacos) (first step). Same-day topography-guided PRK and CXL (second step) were subsequently performed in all patients after the refraction was stable (average 6 months [range: 3 to 11 months]). Thirteen eyes from 13 patients were included in the study. Based on values before the first step and 6 months after the second step, significant improvements were noted in uncorrected distance visual acuity (0.7±0.32 logMAR vs 0.08±0.08 logMAR), corrected distance visual acuity (CDVA) (0.16±0.19 logMAR vs 0.02±0.04 log-MAR), sphere (-3.65±3.08 diopters [D] vs 0.06±1.6 D), astigmatism (-3.31±1.5 D vs -0.98±0.75 D), average K (47.28±1.99 D vs 41.42±3.22 D), and coma (2.36±1.23 μm vs 1.47±0.68 μm) (P<.05). Approximately 63% of eyes gained ⩾2 lines of CDVA, whereas no change in CDVA was reported in ∼27% of eyes. No eyes lost lines of CDVA. The combination of ICRS implantation followed by sequential same-day topography-guided PRK/CXL may be a reasonable option for improving visual acuity in patients with low to moderate keratoconus. Copyright 2013, SLACK Incorporated.

Desktop publishing and validation of custom near visual acuity charts.

PubMed

Marran, Lynn; Liu, Lei; Lau, George

2008-11-01

Customized visual acuity (VA) assessment is an important part of basic and clinical vision research. Desktop computer based distance VA measurements have been utilized, and shown to be accurate and reliable, but computer based near VA measurements have not been attempted, mainly due to the limited spatial resolution of computer monitors. In this paper, we demonstrate how to use desktop publishing to create printed custom near VA charts. We created a set of six near VA charts in a logarithmic progression, 20/20 through 20/63, with multiple lines of the same acuity level, different letter arrangements in each line and a random noise background. This design allowed repeated measures of subjective accommodative amplitude without the potential artifact of familiarity of the optotypes. The background maintained a constant and spatial frequency rich peripheral stimulus for accommodation across the six different acuity levels. The paper describes in detail how pixel-wise accurate black and white bitmaps of Sloan optotypes were used to create the printed custom VA charts. At all acuity levels, the physical sizes of the printed custom optotypes deviated no more than 0.034 log units from that of the standard, satisfying the 0.05 log unit ISO criterion we used to demonstrate physical equivalence. Also, at all acuity levels, log unit differences in the mean target distance for which reliable recognition of letters first occurred for the printed custom optotypes compared to the standard were found to be below 0.05, satisfying the 0.05 log unit ISO criterion we used to demonstrate functional equivalence. It is possible to use desktop publishing to create custom near VA charts that are physically and functionally equivalent to standard VA charts produced by a commercial printing process.

A non-local thermodynamical equilibrium line formation for neutral and singly ionized titanium in model atmospheres of reference A-K stars

NASA Astrophysics Data System (ADS)

Sitnova, T. M.; Mashonkina, L. I.; Ryabchikova, T. A.

2016-09-01

We construct a model atom for Ti I-II using more than 3600 measured and predicted energy levels of Ti I and 1800 energy levels of Ti II, and quantum mechanical photoionization cross-sections. Non-local thermodynamical equilibrium (NLTE) line formation for Ti I and Ti II is treated through a wide range of spectral types from A to K, including metal-poor stars with [Fe/H] down to -2.6 dex. NLTE leads to weakened Ti I lines and positive abundance corrections. The magnitude of NLTE corrections is smaller compared to the literature data for FGK atmospheres. NLTE leads to strengthened Ti II lines and negative NLTE abundance corrections. For the first time, we have performed NLTE calculations for Ti I-II in the 6500 ≤ Teff ≤ 13 000 K range. For four A-type stars, we derived in LTE an abundance discrepancy of up to 0.22 dex between Ti I and Ti II, which vanishes in NLTE. For four other A-B stars, with only Ti II lines observed, NLTE leads to a decrease of line-to-line scatter. An efficiency of inelastic Ti I + H I collisions was estimated from an analysis of Ti I and Ti II lines in 17 cool stars with -2.6 ≤ [Fe/H] ≤ 0.0. Consistent NLTE abundances from Ti I and Ti II were obtained by applying classical Drawinian rates for the stars with log g ≥ 4.1, and neglecting inelastic collisions with H I for the very metal-poor (VMP) giant HD 122563. For the VMP turn-off stars ([Fe/H] ≤ -2 and log g ≤ 4.1), we obtained the positive abundance difference Ti I-II already in LTE, which increases in NLTE. Accurate collisional data for Ti I and Ti II are necessary to help solve this problem.

Comparative Gene Expression Profiling of Primary and Metastatic Renal Cell Carcinoma Stem Cell-Like Cancer Cells

PubMed Central

Czarnecka, Anna M.; Lewicki, Sławomir; Helbrecht, Igor; Brodaczewska, Klaudia; Koch, Irena; Zdanowski, Robert; Król, Magdalena; Szczylik, Cezary

2016-01-01

Background Recent advancement in cancer research has shown that tumors are highly heterogeneous, and multiple phenotypically different cell populations are found in a single tumor. Cancer development and tumor growth are driven by specific types of cells—stem cell-like cancer cells (SCLCCs)—which are also responsible for metastatic spread and drug resistance. This research was designed to verify the presence of SCLCCs in renal cell cancer cell lines. Subsequently, we aimed to characterize phenotype and cell biology of CD105+ cells, defined previously as renal cell carcinoma tumor-initiating cells. The main goal of the project was to describe the gene-expression profile of stem cell-like cancer cells of primary tumor and metastatic origin. Materials and Methods Real-time PCR analysis of stemness genes (Oct-4, Nanog and Ncam) and soft agar colony formation assay were conducted to check the stemness properties of renal cell carcinoma (RCC) cell lines. FACS analysis of CD105+ and CD133+ cells was performed on RCC cells. Isolated CD105+ cells were verified for expression of mesenchymal markers—CD24, CD146, CD90, CD73, CD44, CD11b, CD19, CD34, CD45, HLA-DR and alkaline phosphatase. Hanging drop assay was used to investigate CD105+ cell-cell cohesion. Analysis of free-floating 3D spheres formed by isolated CD105+ was verified, as spheres have been hypothesized to contain undifferentiated multipotent progenitor cells. Finally, CD105+ cells were sorted from primary (Caki-2) and metastatic (ACHN) renal cell cancer cell lines. Gene-expression profiling of sorted CD105+ cells was performed with Agilent’s human GE 4x44K v2 microarrays. Differentially expressed genes were further categorized into canonical pathways. Network analysis and downstream analysis were performed with Ingenuity Pathway Analysis. Results Metastatic RCC cell lines (ACHN and Caki-1) demonstrated higher colony-forming ability in comparison to primary RCC cell lines. Metastatic RCC cell lines harbor numerous CD105+ cell subpopulations and have higher expression of stemness genes (Oct-4 and Nanog). CD105+ cells adopt 3D grape-like floating structures under handing drop conditions. Sorted CD105+ cells are positive for human mesenchymal stem cell (MSC) markers CD90, CD73, CD44, CD146, and alkaline phosphatase activity, but not for CD24 and hematopoietic lineage markers CD34, CD11b, CD19, CD45, and HLA-DR. 1411 genes are commonly differentially expressed in CD105+ cells (both from primary [Caki-2] and metastatic RCC [ACHN] cells) in comparison to a healthy kidney epithelial cell line (ASE-5063). TGF-β, Wnt/β-catenine, epithelial-mesenchymal transition (EMT), Rap1 signaling, PI3K-Akt signaling, and Hippo signaling pathway are deregulated in CD105+ cells. TGFB1, ERBB2, and TNF are the most significant transcriptional regulators activated in these cells. Conclusions All together, RCC-CD105+ cells present stemlike properties. These stem cell-like cancer cells may represent a novel target for therapy. A unique gene-expression profile of CD105+ cells could be used as initial data for subsequent functional studies and drug design. PMID:27812180

No universal scale-dependent impacts of invasive species on native plant species richness.

PubMed

Stohlgren, Thomas J; Rejmánek, Marcel

2014-01-01

A growing number of studies seeking generalizations about the impact of plant invasions compare heavily invaded sites to uninvaded sites. But does this approach warrant any generalizations? Using two large datasets from forests, grasslands and desert ecosystems across the conterminous United States, we show that (i) a continuum of invasion impacts exists in many biomes and (ii) many possible species-area relationships may emerge reflecting a wide range of patterns of co-occurrence of native and alien plant species. Our results contradict a smaller recent study by Powell et al. 2013 (Science 339, 316-318. (doi:10.1126/science.1226817)), who compared heavily invaded and uninvaded sites in three biomes and concluded that plant communities invaded by non-native plant species generally have lower local richness (intercepts of log species richness-log area regression lines) but steeper species accumulation with increasing area (slopes of the regression lines) than do uninvaded communities. We conclude that the impacts of plant invasions on plant species richness are not universal.

Probing star formation relations of mergers and normal galaxies across the CO ladder

NASA Astrophysics Data System (ADS)

Greve, Thomas R.

We examine integrated luminosity relations between the IR continuum and the CO rotational ladder observed for local (ultra) luminous infra-red galaxies ((U)LIRGs, L IR >= 1011 M⊙) and normal star forming galaxies in the context of radiation pressure regulated star formation proposed by Andrews & Thompson (2011). This can account for the normalization and linear slopes of the luminosity relations (log L IR = α log L'CO + β) of both low- and high-J CO lines observed for normal galaxies. Super-linear slopes occur for galaxy samples with significantly different dense gas fractions. Local (U)LIRGs are observed to have sub-linear high-J (J up > 6) slopes or, equivalently, increasing L COhigh-J /L IR with L IR. In the extreme ISM conditions of local (U)LIRGs, the high-J CO lines no longer trace individual hot spots of star formation (which gave rise to the linear slopes for normal galaxies) but a more widespread warm and dense gas phase mechanically heated by powerful supernovae-driven turbulence and shocks.

Development of a novel cell sorting method that samples population diversity in flow cytometry.

PubMed

Osborne, Geoffrey W; Andersen, Stacey B; Battye, Francis L

2015-11-01

Flow cytometry based electrostatic cell sorting is an important tool in the separation of cell populations. Existing instruments can sort single cells into multi-well collection plates, and keep track of cell of origin and sorted well location. However currently single sorted cell results reflect the population distribution and fail to capture the population diversity. Software was designed that implements a novel sorting approach, "Slice and Dice Sorting," that links a graphical representation of a multi-well plate to logic that ensures that single cells are sampled and sorted from all areas defined by the sort region/s. Therefore the diversity of the total population is captured, and the more frequently occurring or rarer cell types are all sampled. The sorting approach was tested computationally, and using functional cell based assays. Computationally we demonstrate that conventional single cell sorting can sample as little as 50% of the population diversity dependant on the population distribution, and that Slice and Dice sorting samples much more of the variety present within a cell population. We then show by sorting single cells into wells using the Slice and Dice sorting method that there are cells sorted using this method that would be either rarely sorted, or not sorted at all using conventional single cell sorting approaches. The present study demonstrates a novel single cell sorting method that samples much more of the population diversity than current methods. It has implications in clonal selection, stem cell sorting, single cell sequencing and any areas where population heterogeneity is of importance. © 2015 International Society for Advancement of Cytometry.

A task analysis of the shift from teacher instructions to self-instructions in performing an in-common task.

PubMed

Grote, I; Rosales, J; Baer, D M

1996-11-01

Three preschool children repeatedly did four kinds of sorts with a deck of stimulus cards: a difficult, untaught target sort and three other sorts considered analytic of self-instructing the target performance. The untaught target sort was to find in a deck of cards those matching what two sample cards had in common. Most preschool children must be taught to mediate this problem. The three other kinds of sorts taught skills involved in the target performance or its mediation. As correct self-instructive talk emerged in the target sorts, it was confirmed. The untaught target sorts were interspersed infrequently among the three alternating directly taught skill sorts, to see if accurate target sorts, and accurate self-instructive talk about the target sorts, would emerge as the three skill sorts were mastered. As all the sorts progressed, increasing accuracy was seen first in the skill sorts and then in the untaught target sorts. All three subjects showed subsequent generalization to new target sorts involving other stimulus sets. Correct spontaneous self-instructions about the target sorts increased from near zero at the beginning of the experiment to consistency at its end. Thus the three skill sorts appeared sufficient for the emergence of a self-instructed solution to the previously insoluble target performance.

Parallel sort with a ranged, partitioned key-value store in a high perfomance computing environment

DOEpatents

Bent, John M.; Faibish, Sorin; Grider, Gary; Torres, Aaron; Poole, Stephen W.

2016-01-26

Improved sorting techniques are provided that perform a parallel sort using a ranged, partitioned key-value store in a high performance computing (HPC) environment. A plurality of input data files comprising unsorted key-value data in a partitioned key-value store are sorted. The partitioned key-value store comprises a range server for each of a plurality of ranges. Each input data file has an associated reader thread. Each reader thread reads the unsorted key-value data in the corresponding input data file and performs a local sort of the unsorted key-value data to generate sorted key-value data. A plurality of sorted, ranged subsets of each of the sorted key-value data are generated based on the plurality of ranges. Each sorted, ranged subset corresponds to a given one of the ranges and is provided to one of the range servers corresponding to the range of the sorted, ranged subset. Each range server sorts the received sorted, ranged subsets and provides a sorted range. A plurality of the sorted ranges are concatenated to obtain a globally sorted result.

Automated high performance liquid chromatography with on-line reduction of disulfides and chemiluminescence detection for determination of thiols and disulfides in biological fluids.

PubMed

Bai, Shouli; Chen, Qingshuo; Lu, Chao; Lin, Jin-Ming

2013-03-20

In general, the reduction of disulfide bonds with tris(2-carboxyethyl)phosphine (TCEP) is performed using off-line operation, which is not only time-consuming but also vulnerable to the spontaneous re-oxidation of thiols during sample preparation and subsequent analysis procedures. To the best of our knowledge, there has been not any case on the on-line reduction for biological disulfides coupled with high performance liquid chromatography (HPLC). In this study, these obstacles are overcome by packing Zn(II)-TCEP complexes into a home-made column. The as-synthesized Zn(II)-TCEP complexes enable efficient reduction of disulfide bonds at pH 3.0. This acidic pH value was compatible with that of the mobile phase for HPLC separation of thiols and disulfides. Therefore, using fluorosurfactant-prepared triangular gold nanoparticles as HPLC postcolumn specific chemiluminescence (CL) reagents for thiols, the feasibility of the established on-line reduction column has been confirmed for the direct identification of both thiols and disulfides by incorporating this reduction column into a single chromatographic separation. Detection limits for these analytes range from 8.3 to 25.4 nM and the linear range in a log-log plot can comprise three orders of magnitude. Finally, the utility of this automated on-line reduction of disulfides-HPLC-CL system has been demonstrated for the reliable determination of thiols and disulfides in human urine and plasma samples. Copyright © 2013 Elsevier B.V. All rights reserved.

Galaxy emission line classification using three-dimensional line ratio diagrams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vogt, Frédéric P. A.; Dopita, Michael A.; Kewley, Lisa J.

2014-10-01

Two-dimensional (2D) line ratio diagnostic diagrams have become a key tool in understanding the excitation mechanisms of galaxies. The curves used to separate the different regions—H II-like or excited by an active galactic nucleus (AGN)—have been refined over time but the core technique has not evolved significantly. However, the classification of galaxies based on their emission line ratios really is a multi-dimensional problem. Here we exploit recent software developments to explore the potential of three-dimensional (3D) line ratio diagnostic diagrams. We introduce the ZQE diagrams, which are a specific set of 3D diagrams that separate the oxygen abundance and themore » ionization parameter of H II region-like spectra and also enable us to probe the excitation mechanism of the gas. By examining these new 3D spaces interactively, we define the ZE diagnostics, a new set of 2D diagnostics that can provide the metallicity of objects excited by hot young stars and that cleanly separate H II region-like objects from the different classes of AGNs. We show that these ZE diagnostics are consistent with the key log [N II]/Hα versus log [O III]/Hβ diagnostic currently used by the community. They also have the advantage of attaching a probability that a given object belongs to one class or the other. Finally, we discuss briefly why ZQE diagrams can provide a new way to differentiate and study the different classes of AGNs in anticipation of a dedicated follow-up study.« less

THE COMPLEX CIRCUMNUCLEAR ENVIRONMENT OF THE BROAD-LINE RADIO GALAXY 3C 390.3 REVEALED BY CHANDRA HETG

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tombesi, F.; Kallman, T.; Leutenegger, M. A.

2016-10-20

We present the first high spectral resolution X-ray observation of the broad-line radio galaxy 3C 390.3 obtained with the high-energy transmission grating spectrometer on board the Chandra X-ray Observatory . The spectrum shows complex emission and absorption features in both the soft X-rays and Fe K band. We detect emission and absorption lines in the energy range E = 700–1000 eV associated with ionized Fe L transitions (Fe XVII–XX). An emission line at the energy of E ≃ 6.4 keV consistent with the Fe K α is also observed. Our best-fit model requires at least three different components: (i) amore » hot emission component likely associated with the hot interstellar medium in this elliptical galaxy with temperature kT = 0.5 ± 0.1 keV; (ii) a warm absorber with ionization parameter log ξ = 2.3 ± 0.5 erg s{sup −1} cm, column density log N {sub H} = 20.7 ± 0.1 cm{sup −2}, and outflow velocity v {sub out} < 150 km s{sup −1}; and (iii) a lowly ionized reflection component in the Fe K band likely associated with the optical broad-line region or the outer accretion disk. These evidences suggest the possibility that we are looking directly down the ionization cone of this active galaxy and that the central X-ray source only photoionizes along the unobscured cone. This is overall consistent with the angle-dependent unified picture of active galactic nuclei.« less

The Complex Circumnuclear Environment of the Broad-Line Radio Galaxy 3C 390.3 Revealed by Chandra HETG

NASA Technical Reports Server (NTRS)

Tombesi, F.; Reeves, J. N.; Kallman, Timothy R.; Reynolds, C. S.; Mushotzky, R. F.; Braito, V.; Behar, E.; Leutenegger, Maurice A.; Cappi, M.

2016-01-01

We present the first high spectral resolution X-ray observation of the broad-line radio galaxy 3C 390.3 obtained with the high-energy transmission grating spectrometer on board the Chandra X-ray Observatory. The spectrum shows complex emission and absorption features in both the soft X-rays and Fe K band. We detect emission and absorption lines in the energy range E = 700-1000 eV associated with ionized Fe L transitions (Fe XVIIXX). An emission line at the energy of E approximately equal to 6.4 keV consistent with the Fe K alpha is also observed. Our best-fit model requires at least three different components: (i) a hot emission component likely associated with the hot interstellar medium in this elliptical galaxy with temperature kT = 0.5 +/- 0.1 keV; (ii) a warm absorber with ionization parameter log Epislon = 2.3 +/- 0.5 erg s(exp 1) cm, column density logN(sub H) = 20.7 +/- 0.1 cm(exp -2), and outflow velocity v(sub out) less than 150 km s(exp -1); and (iii) a lowly ionized reflection component in the Fe K band likely associated with the optical broad-line region or the outer accretion disk. These evidences suggest the possibility that we are looking directly down the ionization cone of this active galaxy and that the central X-ray source only photoionizes along the unobscured cone. This is overall consistent with the angle-dependent unified picture of active galactic nuclei.

VLBI survey of compact broad absorption line quasars with balnicity index BI = 0

NASA Astrophysics Data System (ADS)

Cegłowski, M.; Kunert-Bajraszewska, M.; Roskowiński, C.

2015-06-01

We present high-resolution observations, using both the European VLBI Network (EVN) at 1.7 GHz and the Very Long Baseline Array (VLBA) at 5 and 8.4 GHz, to image radio structures of 14 compact sources classified as broad absorption line (BAL) quasars based on the absorption index (AI). All sources but one were resolved, with the majority showing core-jet morphology typical for radio-loud quasars. We discuss in detail the most interesting cases. The high radio luminosities and small linear sizes of the observed objects indicate they are strong young active galactic nuclei. Nevertheless, the distribution of the radio-loudness parameter, log RI, of a larger sample of AI quasars shows that the objects observed by us constitute the most luminous, small subgroup of the AI population. Additionally, we report that for the radio-loudness parameter, the distribution of AI quasars and that for those selected using the traditional balnicity index differ significantly. Strong absorption is connected with lower log RI and thus probably larger viewing angles. Since the AI quasars have on average larger log RI, the orientation can mean that we see them less absorbed. However, we suggest that the orientation is not the only parameter that affects the detected absorption. That the strong absorption is associated with the weak radio emission is equally important and worth exploring.

Physical properties of the ionized gas and brightness distribution in NGC4736

NASA Astrophysics Data System (ADS)

Rodrigues, I.; Dottori, H.; Cepa, J.; Vilchez, J.

1998-03-01

In this work we study the galaxy NGC4736, using narrow band interference filters imaging centered at the emission lines {Oii} {3727+3729}, Hβ, {Oiii} {5007}, Hα, {Sii} {6716+6730} and {Siii} {9070} and nearby continua. We have obtained sizes, positions, emission line absolute fluxes, and continua intensities for 90 Hii regions, mainly distributed in a ring-like structure of 3.2kpc in diameter. The Hα luminosities are in the range 37.3 <= log L_Hα <= 39.4 ergs(-1) . The Hii regions size distribution presents a characteristic diameter D_0 = 115pc and verifies the relation log (L_Hα ) ~D(3) . The temperature of the ionizing sources and the metallicity of the Hii regions are respectively in the ranges 3.410(4) <~T_⋆ <~ 4.010(4) K and 8.5 <~12 + log (O/H) <~9.3. The masses of the ionizing clusters are in the range 510(3) <~M_T/M_sun <~210(5) . The continua radial surface brightness distribution is better fitted by the superposition of a de Vaucouleurs', a thin and a thick exponential disk laws. The monochromatic colors show that outside the star forming ring the disk presents a younger stellar population than inside it. Tables 3 and 4 are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/Abstract.html

ESCRT-III-Associated Protein ALIX Mediates High-Affinity Phosphate Transporter Trafficking to Maintain Phosphate Homeostasis in Arabidopsis

PubMed Central

Cardona-López, Ximena; Cuyas, Laura; Marín, Elena; Irigoyen, María Luisa; Gil, Erica; Puga, María Isabel; Bligny, Richard; Nussaume, Laurent; Geldner, Niko; Paz-Ares, Javier

2015-01-01

Prior to the release of their cargoes into the vacuolar lumen, sorting endosomes mature into multivesicular bodies (MVBs) through the action of ENDOSOMAL COMPLEX REQUIRED FOR TRANSPORT (ESCRT) protein complexes. MVB-mediated sorting of high-affinity phosphate transporters (PHT1) to the vacuole limits their plasma membrane levels under phosphate-sufficient conditions, a process that allows plants to maintain phosphate homeostasis. Here, we describe ALIX, a cytosolic protein that associates with MVB by interacting with ESCRT-III subunit SNF7 and mediates PHT1;1 trafficking to the vacuole in Arabidopsis thaliana. We show that the partial loss-of-function mutant alix-1 displays reduced vacuolar degradation of PHT1;1. ALIX derivatives containing the alix-1 mutation showed reduced interaction with SNF7, providing a simple molecular explanation for impaired cargo trafficking in alix-1 mutants. In fact, the alix-1 mutation also hampered vacuolar sorting of the brassinosteroid receptor BRI1. We also show that alix-1 displays altered vacuole morphogenesis, implying a new role for ALIX proteins in vacuolar biogenesis, likely acting as part of ESCRT-III complexes. In line with a presumed broad target spectrum, the alix-1 mutation is pleiotropic, leading to reduced plant growth and late flowering, with stronger alix mutations being lethal, indicating that ALIX participates in diverse processes in plants essential for their life. PMID:26342016

Discrimination and classification of acute lymphoblastic leukemia cells by Raman spectroscopy

NASA Astrophysics Data System (ADS)

Managò, Stefano; Valente, Carmen; Mirabelli, Peppino; De Luca, Anna Chiara

2015-05-01

Currently, a combination of technologies is typically required to identify and classify leukemia cells. These methods often lack the specificity and sensitivity necessary for early and accurate diagnosis. Here, we demonstrate the use of Raman spectroscopy to identify normal B cells, collected from healthy patients, and three ALL cell lines (RS4;11, REH and MN60 at different differentiation level, respectively). Raman markers associated with DNA and protein vibrational modes have been identified that exhibit excellent discriminating power for leukemia cell identification. Principal Component Analysis was finally used to confirm the significance of these markers for identify leukemia cells and classifying the data. The obtained results indicate a sorting accuracy of 96% between the three leukemia cell lines.

On-Line Database of Vibration-Based Damage Detection Experiments

NASA Technical Reports Server (NTRS)

Pappa, Richard S.; Doebling, Scott W.; Kholwad, Tina D.

2000-01-01

This paper describes a new, on-line bibliographic database of vibration-based damage detection experiments. Publications in the database discuss experiments conducted on actual structures as well as those conducted with simulated data. The database can be searched and sorted in many ways, and it provides photographs of test structures when available. It currently contains 100 publications, which is estimated to be about 5-10% of the number of papers written to date on this subject. Additional entries are forthcoming. This database is available for public use on the Internet at the following address: http://sdbpappa-mac.larc.nasa.gov. Click on the link named "dd_experiments.fp3" and then type "guest" as the password. No user name is required.

Oncogene activation and tumor suppressor gene inactivation find their sites of expression in the changes in time and space of the age-adjusted cancer incidence rate.

PubMed

Kodama, M; Kodama, T; Murakami, M

2000-01-01

The purpose of the present investigation is to elucidate the relation between the distribution pattern of the age-adjusted incidence rate (AAIR) changes in time and space of 15 tumors of bothe sexes and the locations of centers of centripetal-(oncogene type) and centrifugal-(tumoe suppressor gene type) forces. The fitness of the observed log AAIR data sets to the oncogene type- and the tumor suppressor gene type-equilibrium models and the locations of 2 force centers were calculated by applying the least square method of Gauss to log AAIR pair data series with and without topological data manipulations, which are so designed as to let log AAIR pair data series fit to 2 variant (x, y) frameworks, the Rect-coordinates and the Para-coordinates. The 2 variant (x, y) coordinates are defined each as an (x, y) framework with its X axis crossed at a right angle to the regression line of the original log AAIR data (the Rect-coordinates) and as another framework with its X axis run in parallel with the regression line of the original log AAIR pair data series (the Para-coordinates). The fitness test of log AAIR data series to either the oncogene activation type equilibrium model (r = -1.000) or the tumor suppressor gene inactivation type (r = 1.000) was conducted for each of the male-female type pair data and the female-male type data, for each of log AAIR changes in space and log AAIR changes in time, and for each of the 3 (x, y) frameworks in a given neoplasia of both sexes. The results obtained are given as follows: 1) The positivity rates of the fitness test to the oncogene type equilibrium model and the tumor suppressor gene type model were each 63.3% and 56.7% with the log AAIR changes in space, and 73.3% and 73.3% with log AAIR changes in time, as tested in 15 human neoplasias of both sexes. 2) Evidence was presented to indicate that the clearance of oncogene activation and tumor suppressor gene inactivation is the sine qua non premise of carciniogenesis. 3) The r profile in which the correlation coefficient r, a measure of fitness to the 2 equilibrium models, is converted to either +(r > 0) or -(0 > r) for each of the original-, the Rect-, and the Para-coordinates was found to be informative in identifying a group of tumors with sex discrimination of cancer risk (log AAIR changes in space) or another group of environmental hormone-linked tumors (log AAIR changes in time and space)--a finding to indicate that the r-profile of a given tumor, when compared with other neoplasias, may provide a clue to investigating the biological behavior of the tumor. 4) The recent risk increase of skin cancer of both sexes, being classified as an example of environmental hormone-linked neoplasias, was found to commit its ascension of cancer risk along the direction of the centrifugal forces of the time- and space-linked tumor suppressor gene inactivation plotted in the 2-dimension diagram. In conclusion, the centripetal force of oncogene activation and centrifugal force of tumor suppressor gene inactivation found their sites of expression in the distribution pattern of a cancer risk parameter, log AAIR, of a given neoplasias of both sexes on the 2-dimension diagram. The application of the least square method of Gauss to the log AAIR changes in time and space, and also with and without topological modulations of the original sets, when presented in terms of the r-profile, was found to be informative in understanding behavioral characteristics of human neoplaisias.

Evaluating Possible Heating Mechanisms Using the Transition Region Line Profiles of Late-Type Stars

NASA Technical Reports Server (NTRS)

Wood, Brian E.; Linsky, Jeffrey L.; Ayres, Thomas R.

1997-01-01

Our analysis of high-resolution Goddard High-Resolution Spectrograph (GHRS) spectra of late-type stars shows that the Si IV and C IV lines formed near 10(exp 5) K can be decomposed into the sum of two Gaussians, a broad component and a narrow component. We find that the flux contribution of the broad components is correlated with both the C IV and X-ray surface fluxes. For main-sequence stars, the widths of the narrow components suggest subsonic nonthermal velocities, and there appears to be a tight correlation between these nonthermal velocities and stellar surface gravity [xi(sub nc) varies as g(sup (-.68 +/-.07))]. For evolved stars with lower surface gravities, the nonthermal velocities suggested by the narrow components are at or just above the sound speed. Nonthermal velocities computed from the widths of the broad components are always highly supersonic. We propose that the broad components are diagnostics for microflare heating. Turbulent dissipation and Alfven waves are both viable candidates for the narrow component heating mechanism. A solar analog for the broad components might be the 'explosive events' detected by the High-Resolution Telescope and Spectrograph (HRTS) experiment. The broad component we observe for the Si IV lambda 1394 line of alpha Cen A, a star that is nearly identical to the Sun, has a FWHM of 109 +/- 10 km/s and is blueshifted by 9 +/- 3 km/s relative to the narrow component. Both of these properties are consistent with the properties of the solar explosive events. However, the alpha Cen A broad component accounts for 25% +/- 4% of the total Si IV line flux, while solar explosive events are currently thought to account for no more than 5% of the Sun's total transition region emission. This discrepancy must be resolved before the connection between broad components and explosive events can be positively established. In addition to our analysis of the Si IV and C IV lines of many stars, we also provide a more thorough analysis of all of the available GHRS data for alpha Cen A (G2 V) and alpha Cen B (K1 V). We find that the transition region lines of both stars have redshifts almost identical to those observed on the Sun: showing an increase with line formation temperature up to about log T = 5.2 and then a rapid decrease. Using the O IV] lines as density diagnostics, we compute electron densities of log n(sub e) = 9.65 +/- 0.20 and log n(sub e) = 9.50 +/- 0.30 for alpha Cen A and alpha Cen B, respectively.

Carbon, nitrogen and oxygen abundances in atmospheres of the 5-11 M⊙ B-type main-sequence stars

NASA Astrophysics Data System (ADS)

Lyubimkov, Leonid S.; Lambert, David L.; Poklad, Dmitry B.; Rachkovskaya, Tamara M.; Rostopchin, Sergey I.

2013-02-01

Fundamental parameters and the carbon, nitrogen and oxygen abundances are determined for 22 B-type stars with distances d ≤ 600 pc and slow rotation (v sin i ≤ 66 km s-1). The stars are selected according to their effective temperatures Teff and surface gravities log g, namely: Teff is between 15 300 and 24 100 K and log g is mostly greater than 3.75; therefore, stars with medium masses of 5-11 M⊙ are selected. Theory predicts for the stars with such parameters that the C, N and O abundances in their atmospheres should correspond to their initial values. Non-local thermodynamic equilibrium (non-LTE) analysis of C ii, N ii and O ii lines is implemented. The following mean C, N and O abundances are obtained: log ɛ(C) = 8.31 ± 0.13, log ɛ(N) = 7.80 ± 0.12 and log ɛ(O) = 8.73 ± 0.13. These values are in very good agreement with recent data on the C, N and O abundances for nearby B stars from other authors; it is important that different techniques are applied by us and other authors. When excluding for the stars HR 1810 and HR 2938, which can be mixed, we obtain the following mean abundances for the remaining 20 stars: log ɛ(C) = 8.33 ± 0.11, log ɛ(N) = 7.78 ± 0.09 and log ɛ(O) = 8.72 ± 0.12; these values are in excellent agreement with a present-day cosmic abundance standard (CAS) of Nieva & Przybilla. The derived mean N and O abundances in unevolved B stars are very close to the solar photospheric abundances, as well as to the protosolar ones. However, the mean C abundance is somewhat lower than the solar one; this small but stable carbon deficiency is confirmed by other authors. One may suggest two possibilities to explain the observed C deficiency. First, current non-LTE computations of C ii lines are still partially inadequate. In this case the C deficiency is invalid, so one may conclude that the Sun and the local unevolved B stars have the same metallicity. This would mean that during the Sun's life (i.e. for the past 4.5 × 109 yr) the metallicity of the solar neighbourhood has not markedly changed; so, an intensive enrichment of the solar neighbourhood by metals occurred before the Sun's birth. Secondly, the C deficiency in the local B stars is valid; it is supposed that the Sun can migrate during its life from inner parts of the Galactic disc where it has born, so its observed chemical composition can differ from the composition of young stars in its present neighbourhood.

A Screen Space GPGPU Surface LIC Algorithm for Distributed Memory Data Parallel Sort Last Rendering Infrastructures

NASA Astrophysics Data System (ADS)

Loring, B.; Karimabadi, H.; Rortershteyn, V.

2015-10-01

The surface line integral convolution(LIC) visualization technique produces dense visualization of vector fields on arbitrary surfaces. We present a screen space surface LIC algorithm for use in distributed memory data parallel sort last rendering infrastructures. The motivations for our work are to support analysis of datasets that are too large to fit in the main memory of a single computer and compatibility with prevalent parallel scientific visualization tools such as ParaView and VisIt. By working in screen space using OpenGL we can leverage the computational power of GPUs when they are available and run without them when they are not. We address efficiency and performance issues that arise from the transformation of data from physical to screen space by selecting an alternate screen space domain decomposition. We analyze the algorithm's scaling behavior with and without GPUs on two high performance computing systems using data from turbulent plasma simulations.

A Screen Space GPGPU Surface LIC Algorithm for Distributed Memory Data Parallel Sort Last Rendering Infrastructures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loring, Burlen; Karimabadi, Homa; Rortershteyn, Vadim

2014-07-01

The surface line integral convolution(LIC) visualization technique produces dense visualization of vector fields on arbitrary surfaces. We present a screen space surface LIC algorithm for use in distributed memory data parallel sort last rendering infrastructures. The motivations for our work are to support analysis of datasets that are too large to fit in the main memory of a single computer and compatibility with prevalent parallel scientific visualization tools such as ParaView and VisIt. By working in screen space using OpenGL we can leverage the computational power of GPUs when they are available and run without them when they are not.more » We address efficiency and performance issues that arise from the transformation of data from physical to screen space by selecting an alternate screen space domain decomposition. We analyze the algorithm's scaling behavior with and without GPUs on two high performance computing systems using data from turbulent plasma simulations.« less

Optical treatment of amblyopia in older children and adults is essential prior to enrolment in a clinical trial.

PubMed

Gao, Tina Y; Anstice, Nicola; Babu, Raiju J; Black, Joanna M; Bobier, William R; Dai, Shuan; Guo, Cindy X; Hess, Robert F; Jenkins, Michelle; Jiang, Yannan; Kearns, Lisa; Kowal, Lionel; Lam, Carly S Y; Pang, Peter C K; Parag, Varsha; South, Jayshree; Staffieri, Sandra Elfride; Wadham, Angela; Walker, Natalie; Thompson, Benjamin

2018-03-01

Optical treatment alone can improve visual acuity (VA) in children with amblyopia, thus clinical trials investigating additional amblyopia therapies (such as patching or videogames) for children require a preceding optical treatment phase. Emerging therapies for adult patients are entering clinical trials. It is unknown whether optical treatment is effective for adults with amblyopia and whether an optical correction phase is required for trials involving adults. We examined participants who underwent optical treatment in the Binocular Treatment for Amblyopia using Videogames (BRAVO) clinical trial (ANZCTR ID: ACTRN12613001004752). Participants were recruited in three age groups (7 to 12, 13 to 17, or ≥18 years), and had unilateral amblyopia due to anisometropia and/or strabismus, with amblyopic eye VA of 0.30-1.00 logMAR (6/12 to 6/60, 20/40 to 20/200). Corrective lenses were prescribed based on cycloplegic refraction to fully correct any anisometropia. VA was assessed using the electronic visual acuity testing algorithm (e-ETDRS) test and near stereoacuity was assessed using the Randot Preschool Test. Participants were assessed every four weeks up to 16 weeks, until either VA was stable or until amblyopic eye VA improved to better than 0.30 logMAR, rendering the participant ineligible for the trial. Eighty participants (mean age 24.6 years, range 7.6-55.5 years) completed four to 16 weeks of optical treatment. A small but statistically significant mean improvement in amblyopic eye VA of 0.05 logMAR was observed (S.D. 0.08 logMAR; paired t-test p < 0.0001). Twenty-five participants (31%) improved by ≥1 logMAR line and of these, seven (9%) improved by ≥2 logMAR lines. Stereoacuity improved in 15 participants (19%). Visual improvements were not associated with age, presence of strabismus, or prior occlusion treatment. Two adult participants withdrew due to intolerance to anisometropic correction. Sixteen out of 80 participants (20%) achieved better than 0.30 logMAR VA in the amblyopic eye after optical treatment. Nine of these participants attended additional follow-up and four (44%) showed further VA improvements. Improvements from optical treatment resulted in one-fifth of participants becoming ineligible for the main clinical trial. Studies investigating additional amblyopia therapies must include an appropriate optical treatment only phase and/or parallel treatment group regardless of patient age. Optical treatment of amblyopia in adult patients warrants further investigation. © 2018 The Authors Ophthalmic & Physiological Optics © 2018 The College of Optometrists.

29 CFR 1904.33 - Retention and updating.

Code of Federal Regulations, 2012 CFR

2012-07-01

... RECORDING AND REPORTING OCCUPATIONAL INJURIES AND ILLNESSES Other OSHA Injury and Illness Recordkeeping... must update your stored OSHA 300 Logs to include newly discovered recordable injuries or illnesses and... illnesses. If the description or outcome of a case changes, you must remove or line out the original entry...

29 CFR 1904.33 - Retention and updating.

Code of Federal Regulations, 2014 CFR

2014-07-01

... RECORDING AND REPORTING OCCUPATIONAL INJURIES AND ILLNESSES Other OSHA Injury and Illness Recordkeeping... must update your stored OSHA 300 Logs to include newly discovered recordable injuries or illnesses and... illnesses. If the description or outcome of a case changes, you must remove or line out the original entry...

29 CFR 1904.33 - Retention and updating.

Code of Federal Regulations, 2013 CFR

2013-07-01

... RECORDING AND REPORTING OCCUPATIONAL INJURIES AND ILLNESSES Other OSHA Injury and Illness Recordkeeping... must update your stored OSHA 300 Logs to include newly discovered recordable injuries or illnesses and... illnesses. If the description or outcome of a case changes, you must remove or line out the original entry...

Extending the Calibration of C IV-based Single-epoch Black Hole Mass Estimators for Active Galactic Nuclei

NASA Astrophysics Data System (ADS)

Park, Daeseong; Barth, Aaron J.; Woo, Jong-Hak; Malkan, Matthew A.; Treu, Tommaso; Bennert, Vardha N.; Assef, Roberto J.; Pancoast, Anna

2017-04-01

We provide an updated calibration of C IV λ 1549 broad emission line–based single-epoch (SE) black hole (BH) mass estimators for active galactic nuclei (AGNs) using new data for six reverberation-mapped AGNs at redshift z=0.005{--}0.028 with BH masses (bolometric luminosities) in the range {10}6.5{--}{10}7.5 {M}ȯ ({10}41.7{--}{10}43.8 erg s‑1). New rest-frame UV-to-optical spectra covering 1150–5700 Å for the six AGNs were obtained with the Hubble Space Telescope (HST). Multicomponent spectral decompositions of the HST spectra were used to measure SE emission-line widths for the C IV, Mg II, and Hβ lines, as well as continuum luminosities in the spectral region around each line. We combine the new data with similar measurements for a previous archival sample of 25 AGNs to derive the most consistent and accurate calibrations of the C IV-based SE BH mass estimators against the Hβ reverberation-based masses, using three different measures of broad-line width: full width at half maximum (FWHM), line dispersion ({σ }line}), and mean absolute deviation (MAD). The newly expanded sample at redshift z=0.005{--}0.234 covers a dynamic range in BH mass (bolometric luminosity) of {log}{M}BH}/{M}ȯ =6.5{--}9.1 ({log}{L}bol}/ erg s‑1 = 41.7{--}46.9), and we derive the new C IV-based mass estimators using a Bayesian linear regression analysis over this range. We generally recommend the use of {σ }line} or MAD rather than FWHM to obtain a less biased velocity measurement of the C IV emission line, because its narrow-line component contribution is difficult to decompose from the broad-line profile. Based on observations made with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555. These observations are associated with program GO-12922.

Bisphenol A in Solid Waste Materials, Leachate Water, and Air Particles from Norwegian Waste-Handling Facilities: Presence and Partitioning Behavior.

PubMed

Morin, Nicolas; Arp, Hans Peter H; Hale, Sarah E

2015-07-07

The plastic additive bisphenol A (BPA) is commonly found in landfill leachate at levels exceeding acute toxicity benchmarks. To gain insight into the mechanisms controlling BPA emissions from waste and waste-handling facilities, a comprehensive field and laboratory campaign was conducted to quantify BPA in solid waste materials (glass, combustibles, vehicle fluff, waste electric and electronic equipment (WEEE), plastics, fly ash, bottom ash, and digestate), leachate water, and atmospheric dust from Norwegian sorting, incineration, and landfill facilities. Solid waste concentrations varied from below 0.002 mg/kg (fly ash) to 188 ± 125 mg/kg (plastics). A novel passive sampling method was developed to, for the first time, establish a set of waste-water partition coefficients, KD,waste, for BPA, and to quantify differences between total and freely dissolved concentrations in waste-facility leachate. Log-normalized KD,waste (L/kg) values were similar for all solid waste materials (from 2.4 to 3.1), excluding glass and metals, indicating BPA is readily leachable. Leachate concentrations were similar for landfills and WEEE/vehicle sorting facilities (from 0.7 to 200 μg/L) and dominated by the freely dissolved fraction, not bound to (plastic) colloids (agreeing with measured KD,waste values). Dust concentrations ranged from 2.3 to 50.7 mg/kgdust. Incineration appears to be an effective way to reduce BPA concentrations in solid waste, dust, and leachate.

Grain size statistics and depositional pattern of the Ecca Group sandstones, Karoo Supergroup in the Eastern Cape Province, South Africa

NASA Astrophysics Data System (ADS)

Baiyegunhi, Christopher; Liu, Kuiwu; Gwavava, Oswald

2017-11-01

Grain size analysis is a vital sedimentological tool used to unravel the hydrodynamic conditions, mode of transportation and deposition of detrital sediments. In this study, detailed grain-size analysis was carried out on thirty-five sandstone samples from the Ecca Group in the Eastern Cape Province of South Africa. Grain-size statistical parameters, bivariate analysis, linear discriminate functions, Passega diagrams and log-probability curves were used to reveal the depositional processes, sedimentation mechanisms, hydrodynamic energy conditions and to discriminate different depositional environments. The grain-size parameters show that most of the sandstones are very fine to fine grained, moderately well sorted, mostly near-symmetrical and mesokurtic in nature. The abundance of very fine to fine grained sandstones indicate the dominance of low energy environment. The bivariate plots show that the samples are mostly grouped, except for the Prince Albert samples that show scattered trend, which is due to the either mixture of two modes in equal proportion in bimodal sediments or good sorting in unimodal sediments. The linear discriminant function analysis is dominantly indicative of turbidity current deposits under shallow marine environments for samples from the Prince Albert, Collingham and Ripon Formations, while those samples from the Fort Brown Formation are lacustrine or deltaic deposits. The C-M plots indicated that the sediments were deposited mainly by suspension and saltation, and graded suspension. Visher diagrams show that saltation is the major process of transportation, followed by suspension.

Oscillator strengths of the Si II 181 nanometer resonance multiplet

NASA Technical Reports Server (NTRS)

Bergeson, S. D.; Lawler, J. E.

1993-01-01

We report Si II experimental log (gf)-values of -2.38(4) for the 180.801 nm line, of -2.18(4) for the 181.693 nm line, and of -3.29(5) for the 181.745 nm line, where the number in parentheses is the uncertainty in the last digit. The overall uncertainties (about 10 percent) include the 1 sigma random uncertainty (about 6 percent) and an estimate of the systematic uncertainty. The oscillator strengths are determined by combining branching fractions and radiative lifetimes. The branching fractions are measured using standard spectroradiometry on an optically thin source; the radiative lifetimes are measured using time-resolved laser-induced fluorescence.

The Solar System Origin Revisited

NASA Astrophysics Data System (ADS)

Johnson, Fred M.

2016-10-01

A novel theory will be presented based in part on astronomical observations, plasma physics experiments, principles of physics and forensic techniques. The new theory correctly predicts planetary distances with a 1% precision. It accounts for energy production mechanism inside all of the planets including our Earth. A log-log mass-luminosity plot of G2 class stars and solar system planets results in a straight line plot, whose slope implies that a fission rather than a proton-proton fusion energy production is operating. Furthermore, it is a confirmation that all our planets had originated from within our Sun. Other still-born planets continue to appear on the Sun's surface, they are mislabeled as sunspots.

Spectroscopy Made Easy: A New Tool for Fitting Observations with Synthetic Spectra

NASA Technical Reports Server (NTRS)

Valenti, J. A.; Piskunov, N.

1996-01-01

We describe a new software package that may be used to determine stellar and atomic parameters by matching observed spectra with synthetic spectra generated from parameterized atmospheres. A nonlinear least squares algorithm is used to solve for any subset of allowed parameters, which include atomic data (log gf and van der Waals damping constants), model atmosphere specifications (T(sub eff, log g), elemental abundances, and radial, turbulent, and rotational velocities. LTE synthesis software handles discontiguous spectral intervals and complex atomic blends. As a demonstration, we fit 26 Fe I lines in the NSO Solar Atlas (Kurucz et al.), determining various solar and atomic parameters.

Rule Systems for Runtime Verification: A Short Tutorial

NASA Astrophysics Data System (ADS)

Barringer, Howard; Havelund, Klaus; Rydeheard, David; Groce, Alex

In this tutorial, we introduce two rule-based systems for on and off-line trace analysis, RuleR and LogScope. RuleR is a conditional rule-based system, which has a simple and easily implemented algorithm for effective runtime verification, and into which one can compile a wide range of temporal logics and other specification formalisms used for runtime verification. Specifications can be parameterized with data, or even with specifications, allowing for temporal logic combinators to be defined. We outline a number of simple syntactic extensions of core RuleR that can lead to further conciseness of specification but still enabling easy and efficient implementation. RuleR is implemented in Java and we will demonstrate its ease of use in monitoring Java programs. LogScope is a derivation of RuleR adding a simple very user-friendly temporal logic. It was developed in Python, specifically for supporting testing of spacecraft flight software for NASA’s next 2011 Mars mission MSL (Mars Science Laboratory). The system has been applied by test engineers to analysis of log files generated by running the flight software. Detailed logging is already part of the system design approach, and hence there is no added instrumentation overhead caused by this approach. While post-mortem log analysis prevents the autonomous reaction to problems possible with traditional runtime verification, it provides a powerful tool for test automation. A new system is being developed that integrates features from both RuleR and LogScope.

A New Paradigm for the Treatment of Ovarian Cancer: The Use of Epigenetic Therapy to Sensitize Patients to Immunotherapy and Chemotherapy

DTIC Science & Technology

2015-10-01

leukocytic infiltration. 2.) Complementary to the studies in 1, we will sort myeloid, lymphoid and cancer cells from freshly dissociated tumors in...Activation of the innate immune response by endogenous retroviruses. J. Gen. Virol. 96, 1207–1218.984 Cell 162, 974–986, August 27, 2015 ª2015 Elsevier...immune checkpoint therapy. We identified, from studies of multiple OC cell lines how low doses of the DNA demethylation agents, azacytidine (AZA) and

Two Dimensional Path Planning with Obstacles and Shadows.

DTIC Science & Technology

1987-01-01

22060College Park, MD 20742 8la NAME OF FUNDING/SPONSORING Bb. OFFICE SYMBOL 9. PROCUREMENT INSTRUMENT IDENTIFICATION NUMBER •" " .N!ZATION f (If...quadtree is a tip node (if the tree . It represents a tinifirmly c(olored -Iq tiare region of the picture. A gray n()de ()f the (tii tree is a nd((e...Sight Algorithm traversal of the quadtree, they can be sorted using a binary tree by their relative location on the line of sight, given by the x or y

A General Field Theory for Vortex Structure and Interaction,

DTIC Science & Technology

1983-10-03

up,* * from the far reaches of space we examine the behavior of the spiral galaxy in the Andromeda Nebula, M31. *in a spiral sort of way, naturally...lines were determined with accuracy of 10 km/sec in the spiral galaxy in Andromeda , M31. The gas in the galaxy is assumed to move with the speed of...the spiral galaxy in the Andromeda Nebula there is no "bottom" boundary layer. Needless to say this data collection has been taken from a variety of

Ultracold Mixtures of Rubidium and Ytterbium for Open Quantum System Engineering

DTIC Science & Technology

2014-06-01

was replaced with a standard nipple since the actual thermal conduction is comparable. Second, the collimation tube (5 mm ID x 15 cm length) was...Presumably, there is some sort of thin layer coating the Yb which must first be driven off. The helium buffer gas serves to shorten the mean free...path below the line-of-sight distance to the windows, and we can leave them at room temperature without coating them with Yb. The buffer gas causes

Driving habits in older patients with central vision loss.

PubMed

Sengupta, Sabyasachi; van Landingham, Suzanne W; Solomon, Sharon D; Do, Diana V; Friedman, David S; Ramulu, Pradeep Y

2014-03-01

To determine if central visual loss is associated with driving cessation, driving restriction, or other-driver preference. Cross-sectional study. Sixty-four subjects with bilateral visual loss (<20/32 in better eye) or severe unilateral visual loss (<20/200) from age-related macular degeneration (AMD) and 58 normally sighted controls between 60 and 80 years of age. Participants self-reported driving habits. Other-driver preference was defined as preferring that another drive when there is more than 1 driver in the car. Subjects reporting 2 or more driving limitations were considered to have restricted their driving. Self-reported driving cessation, other-driver preference, and driving restriction. Age-related macular degeneration subjects were older (74.7 vs. 69.7 years), had worse visual acuity (VA; mean better-eye VA, 0.43 vs. 0.08 logarithm of minimum angle of resolution [logMAR]) and contrast sensitivity (CS; 1.4 vs. 1.9 log units of CS [logCS]), and were more likely to be white when compared with controls (P<0.001 for all). Drivers with AMD-related vision loss were more likely to avoid driving over longer distances, beyond 1 hour, at night, and in unfamiliar conditions (P < 0.05 for all). In multivariate models, driving cessation was associated with worse better-eye VA (odds ratio [OR], 1.5 per 1-line decrement in VA; P<0.001) and worse binocular CS (OR, 1.36 per 0.1 logCS increment; P = 0.005); however, AMD group status was not associated with driving cessation (OR, 1.9; P = 0.35). Factors predicting driving restriction were AMD (OR, 9.0; P = 0.004), worse vision (OR, 2.5 per line of VA loss; P<0.001), lower CS (OR, 2.2 per 0.1-logCS increment; P<0.001), and female gender (OR, 27.9; P = 0.002). Other-driver preference was more common with worse vision (OR, 1.6 per 0.1-logMAR increment; P = 0.003), female gender (OR, 4.5; P = 0.02), and being married (OR, 3.8; P = 0.04). Most patients with AMD-related central vision loss continue to drive, but demonstrate significant driving restrictions, especially with more severe VA and CS loss. Future work should determine which driving adaptations the visually impaired best balance safety and independence. Copyright © 2014 American Academy of Ophthalmology. Published by Elsevier Inc. All rights reserved.

Application of a Mathematical Model to Describe the Effects of Chlorpyrifos on Caenorhabditis elegans Development

PubMed Central

Boyd, Windy A.; Smith, Marjolein V.; Kissling, Grace E.; Rice, Julie R.; Snyder, Daniel W.; Portier, Christopher J.; Freedman, Jonathan H.

2009-01-01

Background The nematode Caenorhabditis elegans is being assessed as an alternative model organism as part of an interagency effort to develop better means to test potentially toxic substances. As part of this effort, assays that use the COPAS Biosort flow sorting technology to record optical measurements (time of flight (TOF) and extinction (EXT)) of individual nematodes under various chemical exposure conditions are being developed. A mathematical model has been created that uses Biosort data to quantitatively and qualitatively describe C. elegans growth, and link changes in growth rates to biological events. Chlorpyrifos, an organophosphate pesticide known to cause developmental delays and malformations in mammals, was used as a model toxicant to test the applicability of the growth model for in vivo toxicological testing. Methodology/Principal Findings L1 larval nematodes were exposed to a range of sub-lethal chlorpyrifos concentrations (0–75 µM) and measured every 12 h. In the absence of toxicant, C. elegans matured from L1s to gravid adults by 60 h. A mathematical model was used to estimate nematode size distributions at various times. Mathematical modeling of the distributions allowed the number of measured nematodes and log(EXT) and log(TOF) growth rates to be estimated. The model revealed three distinct growth phases. The points at which estimated growth rates changed (change points) were constant across the ten chlorpyrifos concentrations. Concentration response curves with respect to several model-estimated quantities (numbers of measured nematodes, mean log(TOF) and log(EXT), growth rates, and time to reach change points) showed a significant decrease in C. elegans growth with increasing chlorpyrifos concentration. Conclusions Effects of chlorpyrifos on C. elegans growth and development were mathematically modeled. Statistical tests confirmed a significant concentration effect on several model endpoints. This confirmed that chlorpyrifos affects C. elegans development in a concentration dependent manner. The most noticeable effect on growth occurred during early larval stages: L2 and L3. This study supports the utility of the C. elegans growth assay and mathematical modeling in determining the effects of potentially toxic substances in an alternative model organism using high-throughput technologies. PMID:19753116

Computer routines for probability distributions, random numbers, and related functions

USGS Publications Warehouse

Kirby, W.

1983-01-01

Use of previously coded and tested subroutines simplifies and speeds up program development and testing. This report presents routines that can be used to calculate various probability distributions and other functions of importance in statistical hydrology. The routines are designed as general-purpose Fortran subroutines and functions to be called from user-written main progress. The probability distributions provided include the beta, chi-square, gamma, Gaussian (normal), Pearson Type III (tables and approximation), and Weibull. Also provided are the distributions of the Grubbs-Beck outlier test, Kolmogorov 's and Smirnov 's D, Student 's t, noncentral t (approximate), and Snedecor F. Other mathematical functions include the Bessel function, I sub o, gamma and log-gamma functions, error functions, and exponential integral. Auxiliary services include sorting and printer-plotting. Random number generators for uniform and normal numbers are provided and may be used with some of the above routines to generate numbers from other distributions. (USGS)

Computer routines for probability distributions, random numbers, and related functions

USGS Publications Warehouse

Kirby, W.H.

1980-01-01

Use of previously codes and tested subroutines simplifies and speeds up program development and testing. This report presents routines that can be used to calculate various probability distributions and other functions of importance in statistical hydrology. The routines are designed as general-purpose Fortran subroutines and functions to be called from user-written main programs. The probability distributions provided include the beta, chisquare, gamma, Gaussian (normal), Pearson Type III (tables and approximation), and Weibull. Also provided are the distributions of the Grubbs-Beck outlier test, Kolmogorov 's and Smirnov 's D, Student 's t, noncentral t (approximate), and Snedecor F tests. Other mathematical functions include the Bessel function I (subzero), gamma and log-gamma functions, error functions and exponential integral. Auxiliary services include sorting and printer plotting. Random number generators for uniform and normal numbers are provided and may be used with some of the above routines to generate numbers from other distributions. (USGS)

Observations of Electron-driven Evaporation in a Flare Precursor

NASA Astrophysics Data System (ADS)

Li, Dong; Li, Ying; Su, Wei; Huang, Yu; Ning, Zongjun

2018-02-01

We investigate the relationship between the blueshifts of a hot emission line and the nonthermal emissions in microwave and hard X-ray (HXR) wavelengths in the precursor of a solar flare on 2014 October 27. The flare precursor is identified as a small but well-developed peak in the soft X-ray and extreme-ultraviolet passbands before the GOES flare onset, which is accompanied by a pronounced burst in microwave 17 and 34 GHz and in HXR 25–50 keV. The slit of the Interface Region Imaging Spectrograph (IRIS) stays on one ribbon-like transient during the flare precursor phase, which shows visible nonthermal emissions in Nobeyama Radioheliograph and RHESSI images. The IRIS spectroscopic observations show that the hot line of Fe XXI 1354.09 Å (log T ∼ 7.05) displays blueshifts, while the cool line of Si IV 1402.77 Å (log T ∼ 4.8) exhibits redshifts. The blueshifts and redshifts are well correlated with each other, indicative of an explosive chromospheric evaporation during the flare precursor phase combining a high nonthermal energy flux with a short characteristic timescale. In addition, the blueshifts of Fe XXI 1354.09 Å are well correlated with the microwave and HXR emissions, implying that the explosive chromospheric evaporation during the flare precursor phase is driven by nonthermal electrons.

Denni Algorithm An Enhanced Of SMS (Scan, Move and Sort) Algorithm

NASA Astrophysics Data System (ADS)

Aprilsyah Lubis, Denni; Salim Sitompul, Opim; Marwan; Tulus; Andri Budiman, M.

2017-12-01

Sorting has been a profound area for the algorithmic researchers, and many resources are invested to suggest a more working sorting algorithm. For this purpose many existing sorting algorithms were observed in terms of the efficiency of the algorithmic complexity. Efficient sorting is important to optimize the use of other algorithms that require sorted lists to work correctly. Sorting has been considered as a fundamental problem in the study of algorithms that due to many reasons namely, the necessary to sort information is inherent in many applications, algorithms often use sorting as a key subroutine, in algorithm design there are many essential techniques represented in the body of sorting algorithms, and many engineering issues come to the fore when implementing sorting algorithms., Many algorithms are very well known for sorting the unordered lists, and one of the well-known algorithms that make the process of sorting to be more economical and efficient is SMS (Scan, Move and Sort) algorithm, an enhancement of Quicksort invented Rami Mansi in 2010. This paper presents a new sorting algorithm called Denni-algorithm. The Denni algorithm is considered as an enhancement on the SMS algorithm in average, and worst cases. The Denni algorithm is compared with the SMS algorithm and the results were promising.

Rmax: A systematic approach to evaluate instrument sort performance using center stream catch☆

PubMed Central

Riddell, Andrew; Gardner, Rui; Perez-Gonzalez, Alexis; Lopes, Telma; Martinez, Lola

2015-01-01

Sorting performance can be evaluated with regard to Purity, Yield and/or Recovery of the sorted fraction. Purity is a check on the quality of the sample and the sort decisions made by the instrument. Recovery and Yield definitions vary with some authors regarding both as how efficient the instrument is at sorting the target particles from the original sample, others distinguishing Recovery from Yield, where the former is used to describe the accuracy of the instrument’s sort count. Yield and Recovery are often neglected, mostly due to difficulties in their measurement. Purity of the sort product is often cited alone but is not sufficient to evaluate sorting performance. All of these three performance metrics require re-sampling of the sorted fraction. But, unlike Purity, calculating Yield and/or Recovery calls for the absolute counting of particles in the sorted fraction, which may not be feasible, particularly when dealing with rare populations and precious samples. In addition, the counting process itself involves large errors. Here we describe a new metric for evaluating instrument sort Recovery, defined as the number of particles sorted relative to the number of original particles to be sorted. This calculation requires only measuring the ratios of target and non-target populations in the original pre-sort sample and in the waste stream or center stream catch (CSC), avoiding re-sampling the sorted fraction and absolute counting. We called this new metric Rmax, since it corresponds to the maximum expected Recovery for a particular set of instrument parameters. Rmax is ideal to evaluate and troubleshoot the optimum drop-charge delay of the sorter, or any instrument related failures that will affect sort performance. It can be used as a daily quality control check but can be particularly useful to assess instrument performance before single-cell sorting experiments. Because we do not perturb the sort fraction we can calculate Rmax during the sort process, being especially valuable to check instrument performance during rare population sorts. PMID:25747337

On-line solid-phase microextraction of triclosan, bisphenol A, chlorophenols, and selected pharmaceuticals in environmental water samples by high-performance liquid chromatography-ultraviolet detection.

PubMed

Kim, Dalho; Han, Jungho; Choi, Yongwook

2013-01-01

A method using on-line solid-phase microextraction (SPME) on a carbowax-templated fiber followed by liquid chromatography (LC) with ultraviolet (UV) detection was developed for the determination of triclosan in environmental water samples. Along with triclosan, other selected phenolic compounds, bisphenol A, and acidic pharmaceuticals were studied. Previous SPME/LC or stir-bar sorptive extraction/LC-UV for polar analytes showed lack of sensitivity. In this study, the calculated octanol-water distribution coefficient (log D) values of the target analytes at different pH values were used to estimate polarity of the analytes. The lack of sensitivity observed in earlier studies is identified as a lack of desorption by strong polar-polar interactions between analyte and solid-phase. Calculated log D values were useful to understand or predict the interaction between analyte and solid phase. Under the optimized conditions, the method detection limit of selected analytes by using on-line SPME-LC-UV method ranged from 5 to 33 ng L(-1), except for very polar 3-chlorophenol and 2,4-dichlorophenol which was obscured in wastewater samples by an interfering substance. This level of detection represented a remarkable improvement over the conventional existing methods. The on-line SPME-LC-UV method, which did not require derivatization of analytes, was applied to the determination of TCS including phenolic compounds and acidic pharmaceuticals in tap water and river water and municipal wastewater samples.

Outcomes of 3 hours part-time occlusion treatment combined with near activities among children with unilateral amblyopia.

PubMed

Alotaibi, Abdullah G; Fawazi, Samah M; Alenazy, Badriah R; Abu-Amero, Khaled K

2012-04-01

To evaluate the outcome of part-time occlusion therapy with or without near activities in monocular amblyopic patients. One hundred and thirty patients who prescribed daily occlusion therapy (part-time occlusion) were followed-up for a 12-week period. The study was carried out in the Pediatric Ophthalmology and Orthoptics Clinics of King Abdul-Aziz University Hospital, Riyadh, Saudi Arabia for the period from January to November 2010. Sixty-five patients were recommended to undertake the 3 hours of near visual activities (such as reading a book during patching) while the other 65 patients were not advised to do any near activity. Main outcome measures were best corrected visual acuity (VA) for both groups and line improvement. The total line of VA improved from baseline by an average of 6.7+/-2.37 line log MAR (logarithm of the minimum angle of resolution) units in the group of patching with near activities and by an average of 5.3+/- 2.04 line log MAR units in the group of patching without near activities. All type of amblyopia (strabismic, anisometropic, and mixed types of amblyopia) improved significantly after patching with near activities. Both moderate and severe amblyopia improved significantly in the group of near activities compared with the group without near activities. Performing near activities while patching in the treatment of anisometropic, stabismic, or combined amblyopia improves the VA outcome more than patching alone.

75 FR 25195 - Kake to Petersburg Transmission Line Intertie Project

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-07

... existing roads for construction and long-term maintenance access where possible. New road segments would be.... Both routes would use existing roads for construction and long-term maintenance access where possible...). Both alternative routes follow existing logging roads for the majority of their lengths. In addition...

78 FR 32270 - U.S. Extractive Industries Transparency Initiative Multi-Stakeholder Group (USEITI MSG) Advisory...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

..., consideration of sub- national payments, and discussions on scope and materiality. The agenda for the July 23-24... lines. Please plan to dial into the meeting and/or log- in to WebEx at least 10-15 minutes prior to the...

Density Determinations of the Coronae of Cool Stars Using a Newly Assigned Pair of Fe Xiv Lines in the Spectra of α Canis Minor, α Centauri, and the Sun [Density determinations of the coronae of cool stars using a newly assigned pair of Fe XIV lines in the spectra of alpha Canis Minor, alpha Centauri, and the Sun.

DOE PAGES

Beiersdorfer, P.; Hell, N.; Lepson, J. K.; ...

2015-12-02

We identified a previously unassigned pair of lines between 169 and 170 Å in the coronae of cool stars. Here, we attribute these lines to Fe xiv and show that their intensity ratio is sensitive to the electron density. Using observations taken with the Low Energy Transmission Grating Spectrometer of the Chandra X-ray Observatory we infer a density of log (n e/cm -3) = 10.2 ± 0.7 and 10.3 ± 0.8 from the newly identified line pair in the coronae of Procyon and α Cen A, respectively.

The VIMOS Ultra Deep Survey: Nature, ISM properties, and ionizing spectra of CIII]λ1909 emitters at z = 2-4

NASA Astrophysics Data System (ADS)

Nakajima, K.; Schaerer, D.; Le Fèvre, O.; Amorín, R.; Talia, M.; Lemaux, B. C.; Tasca, L. A. M.; Vanzella, E.; Zamorani, G.; Bardelli, S.; Grazian, A.; Guaita, L.; Hathi, N. P.; Pentericci, L.; Zucca, E.

2018-05-01

Context. Ultraviolet (UV) emission-line spectra are used to spectroscopically confirm high-z galaxies and increasingly also to determine their physical properties. Aims: We construct photoionization models to interpret the observed UV spectra of distant galaxies in terms of the dominant radiation field and the physical condition of the interstellar medium (ISM). These models are applied to new spectroscopic observations from the VIMOS Ultra Deep Survey (VUDS). Methods: We construct a large grid of photoionization models, which use several incident radiation fields (stellar populations, active galactic nuclei (AGNs), mix of stars and AGNs, blackbodies, and others), and cover a wide range of metallicities and ionization parameters. From these models we derive new spectral UV line diagnostics using equivalent widths (EWs) of [CIII]λ1909 doublet, CIVλ1549 doublet and the line ratios of [CIII], CIV, and He IIλ1640 recombination lines. We apply these diagnostics to a sample of 450 [CIII]-emitting galaxies at redshifts z = 2-4 previously identified in VUDS. Results: We demonstrate that our photoionization models successfully reproduce observations of nearby and high-redshift sources with known radiation field and/or metallicity. For star-forming galaxies our models predict that [CIII] EW peaks at sub-solar metallicities, whereas CIV EW peaks at even lower metallicity. Using the UV diagnostics, we show that the average star-forming galaxy (EW([CIII]) 2 Å) based on the composite of the 450 UV-selected galaxies' spectra The inferred metallicity and ionization parameter is typically Z = 0.3-0.5 Z⊙ and logU = -2.7 to - 3, in agreement with earlier works at similar redshifts. The models also indicate an average age of 50-200 Myr since the beginning of the current star-formation, and an ionizing photon production rate, ξion, of logξion/erg-1 Hz = 25.3-25.4. Among the sources with EW([CIII]) >= 10 Å, approximately 30% are likely dominated by AGNs. The metallicity derived for galaxies with EW(CIII) = 10-20 Å is low, Z = 0.02-0.2 Z⊙, and the ionization parameter higher (logU -1.7) than the average star-forming galaxy. To explain the average UV observations of the strongest but rarest [CIII] emitters (EW([CIII]) > 20 Å), we find that stellar photoionization is clearly insufficient. A radiation field consisting of a mix of a young stellar population (logξion/erg-1 Hz 25.7) plus an AGN component is required. Furthermore an enhanced C/O abundance ratio (up to the solar value) is needed for metallicities Z = 0.1-0.2 Z⊙ and logU = -1.7 to - 1.5. Conclusions: A large grid of photoionization models has allowed us to propose new diagnostic diagrams to classify the nature of the ionizing radiation field (star formation or AGN) of distant galaxies using UV emission lines, and to constrain their ISM properties. We have applied this grid to a sample of [CIII]-emitting galaxies at z = 2-4 detected in VUDS, finding a range of physical properties and clear evidence for significant AGN contribution in rare sources with very strong [CIII] emission. The UV diagnostics we propose should also serve as an important basis for the interpretation of upcoming observations of high-redshift galaxies. Based on data obtained with the European Southern Observatory Very Large Telescope, Paranal, Chile, under Large Program 185.A-0791.JSPS Overseas Research Fellow.

Recombination Line versus Forbidden Line Abundances in Planetary Nebulae

NASA Astrophysics Data System (ADS)

Robertson-Tessi, Mark; Garnett, Donald R.

2005-04-01

Recombination lines (RLs) of C II, N II, and O II in planetary nebulae (PNs) have been found to give abundances that are much larger in some cases than abundances from collisionally excited forbidden lines (CELs). The origins of this abundance discrepancy are highly debated. We present new spectroscopic observations of O II and C II recombination lines for six planetary nebulae. With these data we compare the abundances derived from the optical recombination lines with those determined from collisionally excited lines. Combining our new data with published results on RLs in other PNs, we examine the discrepancy in abundances derived from RLs and CELs. We find that there is a wide range in the measured abundance discrepancy Δ(O+2)=logO+2(RL)-logO+2(CEL), ranging from approximately 0.1 dex (within the 1 σ measurement errors) up to 1.4 dex. This tends to rule out errors in the recombination coefficients as a source of the discrepancy. Most RLs yield similar abundances, with the notable exception of O II multiplet V15, known to arise primarily from dielectronic recombination, which gives abundances averaging 0.6 dex higher than other O II RLs. We compare Δ(O+2) against a variety of physical properties of the PNs to look for clues as to the mechanism responsible for the abundance discrepancy. The strongest correlations are found with the nebula diameter and the Balmer surface brightness; high surface brightness, compact PNs show small values of Δ(O+2), while large low surface brightness PNs show the largest discrepancies. An inverse correlation of Δ(O+2) with nebular density is also seen. A marginal correlation of Δ(O+2) is found with expansion velocity. No correlations are seen with electron temperature, He+2/He+, central star effective temperature and luminosity, stellar mass-loss rate, or nebular morphology. Similar results are found for carbon in comparing C II RL abundances with ultraviolet measurements of C III].

Stellar Laboratories II. New Zn Iv and Zn v Oscillator Strengths and Their Validation in the Hot White Dwarfs G191-B2B and RE0503-289

NASA Technical Reports Server (NTRS)

Rauch, T.; Werner, K.; Quinet, P.; Kruk, J. W.

2014-01-01

Context. For the spectral analysis of high-resolution and high-signal-to-noise (SN) spectra of hot stars, state-of-the-art non-local thermodynamic equilibrium (NLTE) model atmospheres are mandatory. These are strongly dependent on the reliability of the atomic data that is used for their calculation. In a recent analysis of the ultraviolet (UV) spectrum of the DA-type white dwarf G191B2B,21 Zn iv lines were newly identified. Because of the lack of Zn iv data, transition probabilities of the isoelectronic Ge vi were adapted for a first, coarse determination of the photospheric Zn abundance.Aims. Reliable Zn iv and Zn v oscillator strengths are used to improve the Zn abundance determination and to identify more Zn lines in the spectra of G191B2B and the DO-type white dwarf RE 0503289. Methods. We performed new calculations of Zn iv and Zn v oscillator strengths to consider their radiative and collisional bound-bound transitions in detail in our NLTE stellar-atmosphere models for the analysis of the Zn iv v spectrum exhibited in high-resolution and high-SN UV observations of G191B2B and RE 0503289. Results. In the UV spectrum of G191B2B, we identify 31 Zn iv and 16 Zn v lines. Most of these are identified for the first time in any star. We can reproduce well almost all of them at log Zn 5.52 0.2 (mass fraction, about 1.7 times solar). In particular, the Zn iv Zn v ionization equilibrium, which is a very sensitive Teff indicator, is well reproduced with the previously determined Teff 60 000 2000 K and log g 7.60 0.05. In the spectrum of RE 0503289, we identified 128 Zn v lines for the first time and determined log Zn 3.57 0.2 (155 times solar). Conclusions. Reliable measurements and calculations of atomic data are a pre-requisite for stellar-atmosphere modeling. Observed Zn iv and Zn v line profiles in two white dwarf (G191B2B and RE 0503289) ultraviolet spectra were well reproduced with our newly calculated oscillator strengths. This allowed us to determine the photospheric Zn abundance of these two stars precisely.

Retinal nerve fiber layer thickness analysis in suspected malingerers with optic disc temporal pallor

PubMed Central

Civelekler, Mustafa; Halili, Ismail; Gundogan, Faith C; Sobaci, Gungor

2009-01-01

Purpose: To investigate the value of temporal retinal nerve fiber layer (RNFLtemporal) thickness in the prediction of malingering. Materials and Methods: This prospective, cross-sectional study was conducted on 33 military conscripts with optic disc temporal pallor (ODTP) and 33 age-and sex-matched healthy controls. Initial visual acuity (VAi) and visual acuity after simulation examination techniques (VAaset) were assessed. The subjects whose VAaset were two or more lines higher than VAi were determined as malingerers. Thickness of the peripapillary RNFL was determined with OCT (Stratus OCT™, Carl Zeiss Meditec, Inc.). RNFLtemporal thickness of the subjects were categorized into one of the 1+ to 4+ groups according to 50% confidence interval (CI), 25% CI and 5% CI values which were assessed in the control group. The VAs were converted to LogMAR-VAs for statistical comparisons. Results: A significant difference was found only in the temporal quadrant of RNFL thickness in subjects with ODTP (P=0.002). Mean LogMAR-VA increased significantly after SETs (P<0.001). Sensitivity, specificity, positive and negative predictive values of categorized RNFLtemporal thickness in diagnosing malingering were 84.6%, 75.0%, 68.8%, 88.2%, respectively. ROC curve showed that RNFLtemporal thickness of 67.5 μm is a significant cut-off point in determining malingering (P=0.001, area under the curve:0.862). The correlations between LogMAR-VAs and RNFLtemporal thicknesses were significant; the correlation coefficient for LogMAR-VAi was lower than the correlation for LogMAR-VAaset (r=−0.447, P=0.009 for LogMAR-VAi; r=−0.676, P<0.001 for LogMAR-VAaset). Conclusions: RNFLtemporal thickness assessment may be a valuable tool in determining malingering in subjects with ODTP objectively. PMID:19700875

Particulate emissions from the combustion of birch, beech, and spruce logs cause different cytotoxic responses in A549 cells.

PubMed

Kasurinen, Stefanie; Jalava, Pasi I; Happo, Mikko S; Sippula, Olli; Uski, Oskari; Koponen, Hanna; Orasche, Jürgen; Zimmermann, Ralf; Jokiniemi, Jorma; Hirvonen, Maija-Riitta

2017-05-01

According to the World Health Organization particulate emissions from the combustion of solid fuels caused more than 110,000 premature deaths worldwide in 2010. Log wood combustion is the most prevalent form of residential biomass heating in developed countries, but it is unknown how the type of wood logs used in furnaces influences the chemical composition of the particulate emissions and their toxicological potential. We burned logs of birch, beech and spruce, which are used commonly as firewood in Central and Northern Europe in a modern masonry heater, and compared them to the particulate emissions from an automated pellet boiler fired with softwood pellets. We determined the chemical composition (elements, ions, and carbonaceous compounds) of the particulate emissions with a diameter of less than 1 µm and tested their cytotoxicity, genotoxicity, inflammatory potential, and ability to induce oxidative stress in a human lung epithelial cell line. The chemical composition of the samples differed significantly, especially with regard to the carbonaceous and metal contents. Also the toxic effects in our tested endpoints varied considerably between each of the three log wood combustion samples, as well as between the log wood combustion samples and the pellet combustion sample. The difference in the toxicological potential of the samples in the various endpoints indicates the involvement of different pathways of toxicity depending on the chemical composition. All three emission samples from the log wood combustions were considerably more toxic in all endpoints than the emissions from the pellet combustion. © 2016 Wiley Periodicals, Inc. Environ Toxicol 32: 1487-1499, 2017. © 2016 Wiley Periodicals, Inc.

ROLE OF PARENTERAL NUTRITION IN ONCOLOGIC PATIENTS WITH INTESTINAL OCCLUSION AND PERITONEAL CARCINOMATOSIS.

PubMed

Aría Guerra, Eva; Cortés-Salgado, Alfonso; Mateo-Lobo, Raquel; Nattero, Lía; Riveiro, Javier; Vega-Piñero, Belén; Valbuena, Beatriz; Carabaña, Fátima; Carrero, Carmen; Grande, Enrique; Carrato, Alfredo; Botella-Carretero, José Ignacio

2015-09-01

the precise role of parenteral nutrition in the management of oncologic patients with intestinal occlusion is not well defined yet. We aimed to identify the effects of parenteral nutrition in these patients regarding prognosis. 55 patients with intestinal occlusion and peritoneal carcinomatosis were included. Parenteral nutrition aimed at 20-35 kcal/Kg/day, and 1.0 g/kg/day of amino-acids. Weight, body mass index, type of tumor, type of chemotherapy, and ECOG among others were recorded and analyzed. 69.1% of the patients had gastrointestinal tumors, 18.2% gynecologic and 12.7% others. Age was 60 ± 13y, baseline ECOG 1.5 ± 0.5 and body mass index 21.6 ± 4.3. Malnutrition was present in 85%. Survival from the start of parenteral nutrition was not significant when considering baseline ECOG (log rank = 0.593, p = 0.743), previous lines of chemotherapy (log rank = 2.117, p = 0.548), baseline BMI (log rank = 2.686, p = 0.261), or type of tumor (log rank = 2.066, p = 0.356). Survival in patients who received home parenteral nutrition after hospital discharge was higher than those who stayed in-hospital (log rank = 7.090, p = 0.008). Survival in patients who started chemotherapy during or after parenteral nutrition was higher than those who did not so (log rank = 17.316, p < 0.001). A total of 3.6% of patients presented catheter related infection without affecting survival (log rank = 0.061, p = 0.804). Parenteral nutrition in patients with advanced cancer and intestinal occlusion is safe, and in tho se who respond to chemotherapy, further administration of home parenteral nutrition together with chemotherapy may enhance prolonged survival. Copyright AULA MEDICA EDICIONES 2014. Published by AULA MEDICA. All rights reserved.

Tackling the Saturation of Oxygen: The Use of Phosphorus and Sulfur as Proxies within the Neutral Interstellar Medium of Star-forming Galaxies

NASA Astrophysics Data System (ADS)

James, B.; Aloisi, A.

2018-02-01

The abundance of oxygen in galaxies is widely used in furthering our understanding of galaxy formation and evolution. Unfortunately, direct measurements of O/H in the neutral gas are extremely difficult to obtain, as the only O I line available within the Hubble Space Telescope (HST) UV wavelength range (1150–3200 Å) is often saturated. As such, proxies for oxygen are needed to indirectly derive O/H via the assumption that solar ratios based on local Milky Way sight lines hold in different environments. In this paper we assess the validity of using two such proxies, P II and S II, within more typical star-forming environments. Using HST-Cosmic Origins Spectrograph (COS) far-UV (FUV) spectra of a sample of nearby star-forming galaxies (SFGs) and the oxygen abundances in their ionized gas, we demonstrate that both P and S are mildly depleted with respect to O and follow a trend, log(P II/S II) = -1.73 +/- 0.18, in excellent agreement with the solar ratio of {log}{({{P}}/{{S}})}ȯ =-1.71 +/- 0.04 over the large range of metallicities (0.03–3.2 Z ⊙) and H I column densities ({log}[N(H I)/cm‑2] =18.44–21.28) spanned by the sample. From literature data we show evidence that both elements individually trace oxygen according to their respective solar ratios across a wide range of environments. Our findings demonst-rate that the solar ratios of {log}{({{P}}/{{O}})}ȯ =-3.28+/- 0.06 and {log}{({{S}}/{{O}})}ȯ =-1.57+/- 0.06 can both be used to derive reliable O/H abundances in the neutral gas of local and high-redshift SFGs. The difference between O/H in the ionized- and neutral gas phases is studied with respect to metallicity and H I content. The observed trends are consistent with galactic outflows and/or star formation inefficiency affecting the most metal-poor galaxies, with the possibility of primordial gas accretion at all metallicities.

Enhancement After Myopic Small Incision Lenticule Extraction (SMILE) Using Surface Ablation.

PubMed

Siedlecki, Jakob; Luft, Nikolaus; Kook, Daniel; Wertheimer, Christian; Mayer, Wolfgang J; Bechmann, Martin; Wiltfang, Rainer; Priglinger, Siegfried G; Sekundo, Walter; Dirisamer, Martin

2017-08-01

To report the feasibility and outcomes of surface ablation after small incision lenticule extraction (SMILE). In this retrospective evaluation of 1,963 SMILE procedures, 43 eyes (2.2%) were re-treated at three separate clinics. Of these, 40 eyes of 28 patients with a follow-up of at least 3 months were included in the analysis. During surface ablation, mitomycin C was applied for haze prevention. Spherical equivalent was -6.35 ± 1.31 diopters (D) before SMILE and -0.86 ± 0.43 D before surface ablation. Surface ablation was performed after a mean of 9.82 ± 5.27 months and resulted in a spherical equivalent of 0.03 ± 0.57 D at 3 months (P < .0001). The number of patients within ±0.50 and ±1.00 D of target refraction increased from 22.5% to 80% and from 72.5% to 92.5%, respectively. Mean uncorrected distance visual acuity (UDVA) improved from 0.23 ± 0.20 to 0.08 ± 0.15 logMAR (P < .0001); 65% of patients gained at least one line. Corrected distance visual acuity (CDVA) remained unchanged with 0.01 ± 0.07 logMAR before versus -0.01 ± 0.05 logMAR after re-treatment (P = .99). Six eyes (15.0%) lost one line of CDVA, but final CDVA was 0.00 logMAR in four and 0.10 logMAR in two of these cases. The safety and efficacy indices were 1.06 and 0.90 at 3 months, respectively. Three of the four surface ablation profiles (Triple-A, tissue-saving algorithm, and topography-guided) resulted in equally good results, whereas enhancement with the aspherically optimized profile (ASA), used in two eyes, resulted in overcorrection (+1.38 and +1.75 D). Combined with the intraoperative application of mitomycin C, surface ablation seems to be a safe and effective method of secondary enhancement after SMILE. Due to the usually low residual myopia, the ASA profile is not recommended in these cases. [J Refract Surg. 2017;33(8):513-518.]. Copyright 2017, SLACK Incorporated.

Damped and sub-damped Lyman-α absorbers in z > 4 QSOs

NASA Astrophysics Data System (ADS)

Guimarães, R.; Petitjean, P.; de Carvalho, R. R.; Djorgovski, S. G.; Noterdaeme, P.; Castro, S.; Poppe, P. C. Da R.; Aghaee, A.

2009-12-01

We present the results of a survey of damped (DLA, log~N(H i)>20.3) and sub-damped Lyman-α systems (19.5 2.55 along the lines-of-sight to 77 quasars with emission redshifts in the range 419.5 were detected of which 40 systems are damped Lyman-α systems for an absorption length of Δ X = 378. About half of the lines of sight of this homogeneous survey have never been investigated for DLAs. We study the evolution with redshift of the cosmological density of the neutral gas and find, consistent with previous studies at similar resolution, that ΩDLA, H_I decreases at z>3.5. The overall cosmological evolution of Ω_HI shows a peak around this redshift. The H i column density distribution for log N(H i)≥20.3 is fitted, consistent with previous surveys, with a single power-law of index α ˜ -1.8 ±0.25. This power-law overpredicts data at the high-end and a second, much steeper, power-law (or a gamma function) is needed. There is a flattening of the function at lower H i column densities with an index of α ˜ -1.4 for the column density range log N(H i)=19.5-21. The fraction of H i mass in sub-DLAs is of the order of 30%. The H i column density distribution does not evolve strongly from z˜ 2.5 to z˜ 4.5. The observations reported here were obtained with the W. M. Keck Observatory, which is operated by the California Association for Research in Astronomy, a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. Tables 1, 2 and Appendices are only available in electronic form at http://www.aanda.org

Establishment and Characterization of a New Muscle Cell Line of Zebrafish (Danio rerio) as an In Vitro Model for Gene Expression Studies.

PubMed

Kumar, Amit; Singh, Neha; Goswami, Mukunda; Srivastava, J K; Mishra, Akhilesh K; Lakra, W S

2016-01-01

A new continuous fibroblast cell line was established from the muscle tissue of healthy juvenile Danio rerio (Zebrafish) through explant method. Fish cell lines serve as useful tool for investigating basic fish biology, as a model for bioassay of environmental toxicant, toxicity ranking, and for developing molecular biomarkers. The cell line was continuously subcultured for a period of 12 months (61 passages) and maintained at 28 °C in L-15 medium supplemented with 10% FBS and 10 ng/mL of basic fibroblastic growth factor (bFGF) without use of antibiotics. Its growth rate was proportional to the FBS concentration, with optimum growth at 15% FBS. DNA barcoding (16SrRNA and COX1) was used to authenticate the cell line. Cells were incubated with propidium iodide and sorted via flow cytometry to calculate the DNA content to confirm the genetic stability. Significant green fluorescent protein (GFP) signals confirmed the utility of cell line in transgenic and genetic manipulation studies. In vitro assay was performed with MTT to examine the growth potential of the cell line. The muscle cell line would provide a novel invaluable in vitro model to identify important genes to understand regulatory mechanisms that govern the molecular regulation of myogenesis and should be useful in biomedical research.

Parallel integer sorting with medium and fine-scale parallelism

NASA Technical Reports Server (NTRS)

Dagum, Leonardo

1993-01-01

Two new parallel integer sorting algorithms, queue-sort and barrel-sort, are presented and analyzed in detail. These algorithms do not have optimal parallel complexity, yet they show very good performance in practice. Queue-sort designed for fine-scale parallel architectures which allow the queueing of multiple messages to the same destination. Barrel-sort is designed for medium-scale parallel architectures with a high message passing overhead. The performance results from the implementation of queue-sort on a Connection Machine CM-2 and barrel-sort on a 128 processor iPSC/860 are given. The two implementations are found to be comparable in performance but not as good as a fully vectorized bucket sort on the Cray YMP.

Sort computation

NASA Technical Reports Server (NTRS)

Dorband, John E.

1988-01-01

Sorting has long been used to organize data in preparation for further computation, but sort computation allows some types of computation to be performed during the sort. Sort aggregation and sort distribution are the two basic forms of sort computation. Sort aggregation generates an accumulative or aggregate result for each group of records and places this result in one of the records. An aggregate operation can be any operation that is both associative and commutative, i.e., any operation whose result does not depend on the order of the operands or the order in which the operations are performed. Sort distribution copies the value from a field of a specific record in a group into that field in every record of that group.

Foraging patterns in online searches.

PubMed

Wang, Xiangwen; Pleimling, Michel

2017-03-01

Nowadays online searches are undeniably the most common form of information gathering, as witnessed by billions of clicks generated each day on search engines. In this work we describe online searches as foraging processes that take place on the semi-infinite line. Using a variety of quantities like probability distributions and complementary cumulative distribution functions of step length and waiting time as well as mean square displacements and entropies, we analyze three different click-through logs that contain the detailed information of millions of queries submitted to search engines. Notable differences between the different logs reveal an increased efficiency of the search engines. In the language of foraging, the newer logs indicate that online searches overwhelmingly yield local searches (i.e., on one page of links provided by the search engines), whereas for the older logs the foraging processes are a combination of local searches and relocation phases that are power law distributed. Our investigation of click logs of search engines therefore highlights the presence of intermittent search processes (where phases of local explorations are separated by power law distributed relocation jumps) in online searches. It follows that good search engines enable the users to find the information they are looking for through a local exploration of a single page with search results, whereas for poor search engine users are often forced to do a broader exploration of different pages.

Foraging patterns in online searches

NASA Astrophysics Data System (ADS)

Wang, Xiangwen; Pleimling, Michel

2017-03-01

Nowadays online searches are undeniably the most common form of information gathering, as witnessed by billions of clicks generated each day on search engines. In this work we describe online searches as foraging processes that take place on the semi-infinite line. Using a variety of quantities like probability distributions and complementary cumulative distribution functions of step length and waiting time as well as mean square displacements and entropies, we analyze three different click-through logs that contain the detailed information of millions of queries submitted to search engines. Notable differences between the different logs reveal an increased efficiency of the search engines. In the language of foraging, the newer logs indicate that online searches overwhelmingly yield local searches (i.e., on one page of links provided by the search engines), whereas for the older logs the foraging processes are a combination of local searches and relocation phases that are power law distributed. Our investigation of click logs of search engines therefore highlights the presence of intermittent search processes (where phases of local explorations are separated by power law distributed relocation jumps) in online searches. It follows that good search engines enable the users to find the information they are looking for through a local exploration of a single page with search results, whereas for poor search engine users are often forced to do a broader exploration of different pages.

The WiggleZ Dark Energy Survey: final data release and the metallicity of UV-luminous galaxies

NASA Astrophysics Data System (ADS)

Drinkwater, Michael J.; Byrne, Zachary J.; Blake, Chris; Glazebrook, Karl; Brough, Sarah; Colless, Matthew; Couch, Warrick; Croton, Darren J.; Croom, Scott M.; Davis, Tamara M.; Forster, Karl; Gilbank, David; Hinton, Samuel R.; Jelliffe, Ben; Jurek, Russell J.; Li, I.-hui; Martin, D. Christopher; Pimbblet, Kevin; Poole, Gregory B.; Pracy, Michael; Sharp, Rob; Smillie, Jon; Spolaor, Max; Wisnioski, Emily; Woods, David; Wyder, Ted K.; Yee, Howard K. C.

2018-03-01

The WiggleZ Dark Energy Survey measured the redshifts of over 200 000 ultraviolet (UV)-selected (NUV < 22.8 mag) galaxies on the Anglo-Australian Telescope. The survey detected the baryon acoustic oscillation signal in the large-scale distribution of galaxies over the redshift range 0.2 < z < 1.0, confirming the acceleration of the expansion of the Universe and measuring the rate of structure growth within it. Here, we present the final data release of the survey: a catalogue of 225 415 galaxies and individual files of the galaxy spectra. We analyse the emission-line properties of these UV-luminous Lyman-break galaxies by stacking the spectra in bins of luminosity, redshift, and stellar mass. The most luminous (-25 mag

Multiphase gas in quasar absorption-line systems

NASA Technical Reports Server (NTRS)

Giroux, Mark L.; Sutherland, Ralph S.; Shull, J. Michael

1994-01-01

In the standard model for H I Lyman-limit (LL) quasar absorption-line systems, the absorbing matter is galactic disk and halo gas, heated and photoionized by the metagalactic radiation field produced by active galaxies. In recent Hubble Space Telescope (HST) observations (Reimers et al. 1992; Vogel & Reimers 1993; Reimers & Vogel 1993) of LL systems along the line of sight to the quasar HS 1700+6416, surprisingly high He I/H I ratios and a wide distribution of column densities of C, N, and O ions are deduced from extreme ultraviolet absorption lines. We show that these observations are incompatible with photoionization equilibrium by a single metagalactic ionizing background. We argue that these quasar absorption systems possess a multiphase interstellar medium similar to that of our Galaxy, in which extended hot, collisionally ionized gas is responsible for some or all of the high ionization stages of heavy elements. From the He/H ratios we obtain -4.0 less than or = log U less than or = -3.0, while the CNO ions are consistent with hot gas in collisional ionization equilibrium at log T = 5.3 and (O/H) = -1.6. The supernova rate necessary to produce these heavy elements and maintain the hot-gas energy budget of approximately 10(exp 41.5) ergs/s is approximately 10(exp -2)/yr, similar to that which maintains the 'three-phase' interstellar medium in our own Galaxy. As a consequence of the change in interpretation from photoionized gas to a multiphase medium, the derived heavy-element abundances (e.g., O/C) of these systems are open to question owing to substantial ionization corrections for unseen C V in the hot phase. The metal-line ratios may also lead to erroneous diagnostics of the shape of the metagalactic ionizaing spectrum and the ionizing parameter of the absorbers.

Near-infrared spectroscopy of a nitrogen-loud quasar SDSS J1707+6443

NASA Astrophysics Data System (ADS)

Araki, N.; Nagao, T.; Matsuoka, K.; Marconi, A.; Maiolino, R.; Ikeda, H.; Hashimoto, T.; Taniguchi, Y.; Murayama, T.

2012-07-01

We present near-infrared spectroscopy of the z ≃ 3.2 quasar SDSS J1707+6443, obtained with MOIRCS on the Subaru Telescope. This quasar is classified as a "nitrogen-loud" quasar because of the fairly strong N iii] and N iv] semi-forbidden emission lines from the broad-line region (BLR) observed in its rest-frame UV spectrum. However, our rest-frame optical spectrum from MOIRCS shows strong [O iii] emission from the narrow-line region (NLR), suggesting that, at variance with the BLR, NLR gas is not metal-rich. To reconcile these contradictory results, there may be two alternative possibilities: (1) the strong nitrogen lines from the BLR are simply caused by a very high relative abundance of nitrogen and not by a very high BLR metallicity, or (2) the BLR metallicity is not representative of the metallicity of the host galaxy, which is better traced by the NLR. In either case, the strong broad nitrogen lines in the UV spectrum are ot indication of a chemically enriched host galaxy. We estimated the black hole mass and Eddington ratio of this quasar from the velocity width of both C iv and Hβ, which results in log (MBH/M⊙) = 9.50 and log (Lbol/LEdd) = -0.34. The relatively high Eddington ratio is consistent with our earlier result that strong nitrogen emission from BLRs is associated with high Eddington ratios. Finally, we detected significant [Ne iii] emission from the NLR, implying a quite high gas density of ne ~ 106 cm-3 and suggesting a strong coupling between quasar activity and dense interstellar clouds in the host galaxy.

Research on Spectroscopy, Opacity, and Atmospheres

NASA Astrophysics Data System (ADS)

Kurucz, Robert L.

1996-01-01

The main accomplishment was the merging of all the atomic line data into one wavelength-sorted list that is simple to use. We have combined all the atomic files from a CDROM into 534,910 line files GFALL.DAT and GFELEN.DAT. These are the data we use to compute spectra. They are not up to date. References are given in GFALL.REF or GFELEK.REF. There are no references after 1988, and for light elements there are no references after 1979. One new development is the inclusion of hyperfine splitting for the iron group elements using hyperfine data from the literature through 1993. The data are very incomplete. We have supplied a program for splitting the line list for a species. It reads the hyperfine and isotopic splitting parameters for levels and computes the splittings whenever those levels appear. Lines with no splitting data are copied untouched. Because Sc, Mn, and Co are monoisotopic, only the hyperfine splittings are needed. Since 51V is much more abundant than 50V, the isotope shifts are small for 51V, and we approximate V with 51V. GFALLHYP.DAT has 754,946 lines including hyperfine Sc I, V I, Mn I, and Co I.

Development of the Off-line Analysis Code for GODDESS

NASA Astrophysics Data System (ADS)

Garland, Heather; Cizewski, Jolie; Lepailleur, Alex; Walters, David; Pain, Steve; Smith, Karl

2016-09-01

Determining (n, γ) cross sections on unstable nuclei is important for understanding the r-process that is theorized to occur in supernovae and neutron-star mergers. However, (n, γ) reactions are difficult to measure directly because of the short lifetime of the involved neutron rich nuclei. A possible surrogate for the (n, γ) reaction is the (d,p γ) reaction; the measurement of these reactions in inverse kinematics is part of the scope of GODDESS - Gammasphere ORRUBA (Oak Ridge Rutgers University Barrel Array): Dual Detectors for Experimental Structure Studies. The development of an accurate and efficient off-line analysis code for GODDESS experiments is not only essential, but also provides a unique opportunity to create an analysis code designed specifically for transfer reaction experiments. The off-line analysis code has been developed to produce histograms from the binary data file to determine how to best sort events. Recent developments in the off-line analysis code will be presented as well as details on the energy and position calibrations for the ORRUBA detectors. This work is supported in part by the U.S. Department of Energy and National Science Foundation.

A conserved role for the ESCRT membrane budding complex in LINE retrotransposition

PubMed Central

Dong, Chun; Han, Jeffrey S.

2017-01-01

Long interspersed nuclear element-1s (LINE-1s, or L1s) are an active family of retrotransposable elements that continue to mutate mammalian genomes. Despite the large contribution of L1 to mammalian genome evolution, we do not know where active L1 particles (particles in the process of retrotransposition) are located in the cell, or how they move towards the nucleus, the site of L1 reverse transcription. Using a yeast model of LINE retrotransposition, we identified ESCRT (endosomal sorting complex required for transport) as a critical complex for LINE retrotransposition, and verified that this interaction is conserved for human L1. ESCRT interacts with L1 via a late domain motif, and this interaction facilitates L1 replication. Loss of the L1/ESCRT interaction does not impair RNP formation or enzymatic activity, but leads to loss of retrotransposition and reduced L1 endonuclease activity in the nucleus. This study highlights the importance of the ESCRT complex in the L1 life cycle and suggests an unusual mode for L1 RNP trafficking. PMID:28586350

Derivation of sorting programs

NASA Technical Reports Server (NTRS)

Varghese, Joseph; Loganantharaj, Rasiah

1990-01-01

Program synthesis for critical applications has become a viable alternative to program verification. Nested resolution and its extension are used to synthesize a set of sorting programs from their first order logic specifications. A set of sorting programs, such as, naive sort, merge sort, and insertion sort, were successfully synthesized starting from the same set of specifications.

New Directions in the NOAO Observing Proposal System

NASA Astrophysics Data System (ADS)

Gasson, David; Bell, Dave

For the past eight years NOAO has been refining its on-line observing proposal system. Virtually all related processes are now handled electronically. Members of the astronomical community can submit proposals through email, web form, or via the Gemini Phase I Tool. NOAO staff can use the system to do administrative tasks, scheduling, and compilation of various statistics. In addition, all information relevant to the TAC process is made available on-line, including the proposals themselves (in HTML, PDF and PostScript) and technical comments. Grades and TAC comments are entered and edited through web forms, and can be sorted and filtered according to specified criteria. Current developments include a move away from proprietary solutions, toward open standards such as SQL (in the form of the MySQL relational database system), Perl, PHP and XML.

PULSE AMPLITUDE ANALYZER

DOEpatents

Greenblatt, M.H.

1958-03-25

This patent pertains to pulse amplitude analyzers for sorting and counting a serles of pulses, and specifically discloses an analyzer which ls simple in construction and presents the puise height distribution visually on an oscilloscope screen. According to the invention, the pulses are applied to the vertical deflection plates of an oscilloscope and trigger the horizontal sweep. Each pulse starts at the same point on the screen and has a maximum amplitude substantially along the same vertical line. A mask is placed over the screen except for a slot running along the line where the maximum amplitudes of the pulses appear. After the slot has been scanned by a photocell in combination with a slotted rotating disk, the photocell signal is displayed on an auxiliary oscilloscope as vertical deflection along a horizontal time base to portray the pulse amplitude distribution.

Fishing tool retrieves MWD nuclear source from deep well

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

A new wire line tool has successfully retrieved the nuclear sources and formation data from a measurement-while-drilling (MWD) tool stuck in a deep, highly deviated well in the Gulf of Mexico. On Nov. 8, 1993, Schlumberger Wireline and Testing and Anadrill ran a logging-while-drilling inductive coupling (LINC) tool on conventional wire line to fish the gamma ray and neutron sources from a compensated density neutron (CDN) tool stuck in a well at 19,855 ft with an inclination greater than 80[degree]. The paper briefly describes the operation and equipment.

Analytical performance of the Hologic Aptima HBV Quant Assay and the COBAS Ampliprep/COBAS TaqMan HBV test v2.0 for the quantification of HBV DNA in plasma samples.

PubMed

Schønning, Kristian; Johansen, Kim; Nielsen, Lone Gilmor; Weis, Nina; Westh, Henrik

2018-07-01

Quantification of HBV DNA is used for initiating and monitoring antiviral treatment. Analytical test performance consequently impacts treatment decisions. To compare the analytical performance of the Aptima HBV Quant Assay (Aptima) and the COBAS Ampliprep/COBAS TaqMan HBV Test v2.0 (CAPCTMv2) for the quantification of HBV DNA in plasma samples. The performance of the two tests was compared on 129 prospective plasma samples, and on 63 archived plasma samples of which 53 were genotyped. Linearity of the two assays was assessed on dilutions series of three clinical samples (Genotype B, C, and D). Bland-Altman analysis of 120 clinical samples, which quantified in both tests, showed an average quantification bias (Aptima - CAPCTMv2) of -0.19 Log IU/mL (SD: 0.33 Log IU/mL). A single sample quantified more than three standard deviations higher in Aptima than in CAPCTMv2. Only minor differences were observed between genotype A (N = 4; average difference -0.01 Log IU/mL), B (N = 8; -0.13 Log IU/mL), C (N = 8; -0.31 Log IU/mL), D (N = 25; -0.22 Log IU/mL), and E (N = 7; -0.03 Log IU/mL). Deming regression showed that the two tests were excellently correlated (slope of the regression line 1.03; 95% CI: 0.998-1.068). Linearity of the tests was evaluated on dilution series and showed an excellent correlation of the two tests. Both tests were precise with %CV less than 3% for HBV DNA ≥3 Log IU/mL. The Aptima and CAPCTMv2 tests are highly correlated, and both tests are useful for monitoring patients chronically infected with HBV. Copyright © 2018 Elsevier B.V. All rights reserved.

Safe sorting of GFP-transduced live cells for subsequent culture using a modified FACS vantage.

PubMed

Sørensen, T U; Gram, G J; Nielsen, S D; Hansen, J E

1999-12-01

A stream-in-air cell sorter enables rapid sorting to a high purity, but it is not well suited for sorting of infectious material due to the risk of airborne spread to the surroundings. A FACS Vantage cell sorter was modified for safe use with potentially HIV infected cells. Safety tests with bacteriophages were performed to evaluate the potential spread of biologically active material during cell sorting. Cells transduced with a retroviral vector carrying the gene for GFP were sorted on the basis of their GFP fluorescence, and GFP expression was followed during subsequent culture. The bacteriophage sorting showed that the biologically active material was confined to the sorting chamber. A failure mode simulating a nozzle blockage resulted in detectable droplets inside the sorting chamber, but no droplets could be detected when an additional air suction from the sorting chamber had been put on. The GFP transduced cells were sorted to 99% purity. Cells not expressing GFP at the time of sorting did not turn on the gene during subsequent culture. Un-sorted cells and cells sorted to be positive for GFP showed a decrease in the fraction of GFP positive cells during culture. Sorting of live infected cells can be performed safely and with no deleterious effects on vector expression using the modified FACS Vantage instrument. Copyright 1999 Wiley-Liss, Inc.

Could LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns.

PubMed

Supek, Fran; Ramljak, Tatjana Šumanovac; Marjanović, Marko; Buljubašić, Maja; Kragol, Goran; Ilić, Nataša; Smuc, Tomislav; Zahradka, Davor; Mlinarić-Majerski, Kata; Kralj, Marijeta

2011-08-01

18-crown-6 ethers are known to exert their biological activity by transporting K(+) ions across cell membranes. Using non-linear Support Vector Machines regression, we searched for structural features that influence antiproliferative activity in a diverse set of 19 known oxa-, monoaza- and diaza-18-crown-6 ethers. Here, we show that the logP of the molecule is the most important molecular descriptor, among ∼1300 tested descriptors, in determining biological potency (R(2)(cv) = 0.704). The optimal logP was at 5.5 (Ghose-Crippen ALOGP estimate) while both higher and lower values were detrimental to biological potency. After controlling for logP, we found that the antiproliferative activity of the molecule was generally not affected by side chain length, molecular symmetry, or presence of side chain amide links. To validate this QSAR model, we synthesized six novel, highly lipophilic diaza-18-crown-6 derivatives with adamantane moieties attached to the side arms. These compounds have near-optimal logP values and consequently exhibit strong growth inhibition in various human cancer cell lines and a bacterial system. The bioactivities of different diaza-18-crown-6 analogs in Bacillus subtilis and cancer cells were correlated, suggesting conserved molecular features may be mediating the cytotoxic response. We conclude that relying primarily on the logP is a sensible strategy in preparing future 18-crown-6 analogs with optimized biological activity. Copyright © 2011 Elsevier Masson SAS. All rights reserved.

Pattern mining of user interaction logs for a post-deployment usability evaluation of a radiology PACS client.

PubMed

Jorritsma, Wiard; Cnossen, Fokie; Dierckx, Rudi A; Oudkerk, Matthijs; van Ooijen, Peter M A

2016-01-01

To perform a post-deployment usability evaluation of a radiology Picture Archiving and Communication System (PACS) client based on pattern mining of user interaction log data, and to assess the usefulness of this approach compared to a field study. All user actions performed on the PACS client were logged for four months. A data mining technique called closed sequential pattern mining was used to automatically extract frequently occurring interaction patterns from the log data. These patterns were used to identify usability issues with the PACS. The results of this evaluation were compared to the results of a field study based usability evaluation of the same PACS client. The interaction patterns revealed four usability issues: (1) the display protocols do not function properly, (2) the line measurement tool stays active until another tool is selected, rather than being deactivated after one use, (3) the PACS's built-in 3D functionality does not allow users to effectively perform certain 3D-related tasks, (4) users underuse the PACS's customization possibilities. All usability issues identified based on the log data were also found in the field study, which identified 48 issues in total. Post-deployment usability evaluation based on pattern mining of user interaction log data provides useful insights into the way users interact with the radiology PACS client. However, it reveals few usability issues compared to a field study and should therefore not be used as the sole method of usability evaluation. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

A mouse model for triple-negative breast cancer tumor-initiating cells (TNBC-TICs) exhibits similar aggressive phenotype to the human disease.

PubMed

Kaur, Punit; Nagaraja, Ganachari M; Zheng, Hongying; Gizachew, Dawit; Galukande, Moses; Krishnan, Sunil; Asea, Alexzander

2012-03-27

Triple-negative breast cancer (TNBC) exhibit characteristics quite distinct from other kinds of breast cancer, presenting as an aggressive disease--recurring and metastasizing more often than other kinds of breast cancer, without tumor-specific treatment options and accounts for 15% of all types of breast cancer with higher percentages in premenopausal African-American and Hispanic women. The reason for this aggressive phenotype is currently the focus of intensive research. However, progress is hampered by the lack of suitable TNBC cell model systems. To understand the mechanistic basis for the aggressiveness of TNBC, we produced a stable TNBC cell line by sorting for 4T1 cells that do not express the estrogen receptor (ER), progesterone receptor (PgR) or the gene for human epidermal growth factor receptor 2 (HER2). As a control, we produced a stable triple-positive breast cancer (TPBC) cell line by transfecting 4T1 cells with rat HER2, ER and PgR genes and sorted for cells with high expression of ER and PgR by flow cytometry and high expression of the HER2 gene by Western blot analysis. We isolated tumor-initiating cells (TICs) by sorting for CD24+/CD44high/ALDH1+ cells from TNBC (TNBC-TICs) and TPBC (TPBC-TICs) stable cell lines. Limiting dilution transplantation experiments revealed that CD24+/CD44high/ALDH1+ cells derived from TNBC (TNBC-TICs) and TPBC (TPBC-TICs) were significantly more effective at repopulating the mammary glands of naïve female BALB/c mice than CD24-/CD44-/ALDH1- cells. Implantation of the TNBC-TICs resulted in significantly larger tumors, which metastasized to the lungs to a significantly greater extent than TNBC, TPBC-TICs, TPBC or parental 4T1 cells. We further demonstrated that the increased aggressiveness of TNBC-TICs correlates with the presence of high levels of mouse twenty-five kDa heat shock protein (Hsp25/mouse HspB1) and seventy-two kDa heat shock protein (Hsp72/HspA1A). Taken together, we have developed a TNBC-TICs model system based on the 4T1 cells which is a very useful metastasis model with the advantage of being able to be transplanted into immune competent recipients. Our data demonstrates that the TNBC-TICs model system could be a useful tool for studies on the pathogenesis and therapeutic treatment for TNBC.

A mouse model for triple-negative breast cancer tumor-initiating cells (TNBC-TICs) exhibits similar aggressive phenotype to the human disease

PubMed Central

2012-01-01

Background Triple-negative breast cancer (TNBC) exhibit characteristics quite distinct from other kinds of breast cancer, presenting as an aggressive disease--recurring and metastasizing more often than other kinds of breast cancer, without tumor-specific treatment options and accounts for 15% of all types of breast cancer with higher percentages in premenopausal African-American and Hispanic women. The reason for this aggressive phenotype is currently the focus of intensive research. However, progress is hampered by the lack of suitable TNBC cell model systems. Methods To understand the mechanistic basis for the aggressiveness of TNBC, we produced a stable TNBC cell line by sorting for 4T1 cells that do not express the estrogen receptor (ER), progesterone receptor (PgR) or the gene for human epidermal growth factor receptor 2 (HER2). As a control, we produced a stable triple-positive breast cancer (TPBC) cell line by transfecting 4T1 cells with rat HER2, ER and PgR genes and sorted for cells with high expression of ER and PgR by flow cytometry and high expression of the HER2 gene by Western blot analysis. Results We isolated tumor-initiating cells (TICs) by sorting for CD24+/CD44high/ALDH1+ cells from TNBC (TNBC-TICs) and TPBC (TPBC-TICs) stable cell lines. Limiting dilution transplantation experiments revealed that CD24+/CD44high/ALDH1+ cells derived from TNBC (TNBC-TICs) and TPBC (TPBC-TICs) were significantly more effective at repopulating the mammary glands of naïve female BALB/c mice than CD24-/CD44-/ALDH1- cells. Implantation of the TNBC-TICs resulted in significantly larger tumors, which metastasized to the lungs to a significantly greater extent than TNBC, TPBC-TICs, TPBC or parental 4T1 cells. We further demonstrated that the increased aggressiveness of TNBC-TICs correlates with the presence of high levels of mouse twenty-five kDa heat shock protein (Hsp25/mouse HspB1) and seventy-two kDa heat shock protein (Hsp72/HspA1A). Conclusions Taken together, we have developed a TNBC-TICs model system based on the 4T1 cells which is a very useful metastasis model with the advantage of being able to be transplanted into immune competent recipients. Our data demonstrates that the TNBC-TICs model system could be a useful tool for studies on the pathogenesis and therapeutic treatment for TNBC. PMID:22452810

Zipf law: an extreme perspective

NASA Astrophysics Data System (ADS)

Eliazar, Iddo

2016-04-01

Extreme value theory (EVT) asserts that the Fréchet law emerges universally from linearly scaled maxima of collections of independent and identically distributed random variables that are positive-valued. Observations of many real-world sizes, e.g. city-sizes, give rise to the Zipf law: if we rank the sizes decreasingly, and plot the log-sizes versus the log-ranks, then an affine line emerges. In this paper we present an EVT approach to the Zipf law. Specifically, we establish that whenever the Fréchet law emerges from the EVT setting, then the Zipf law follows. The EVT generation of the Zipf law, its universality, and its associated phase transition, are analyzed and described in detail.

Design and realization of sort manipulator of crystal-angle sort machine

NASA Astrophysics Data System (ADS)

Wang, Ming-shun; Chen, Shu-ping; Guan, Shou-ping; Zhang, Yao-wei

2005-12-01

It is a current tendency of development in automation technology to replace manpower with manipulators in working places where dangerous, harmful, heavy or repetitive work is involved. The sort manipulator is installed in a crystal-angle sort machine to take the place of manpower, and engaged in unloading and sorting work. It is the outcome of combing together mechanism, electric transmission, and pneumatic element and micro-controller control. The step motor makes the sort manipulator operate precisely. The pneumatic elements make the sort manipulator be cleverer. Micro-controller's software bestows some simple artificial intelligence on the sort manipulator, so that it can precisely repeat its unloading and sorting work. The combination of manipulator's zero position and step motor counting control puts an end to accumulating error in long time operation. A sort manipulator's design in the practice engineering has been proved to be correct and reliable.

Should tumbling E go out of date in amblyopia screening? Evidence from a population-based sample normative in children aged 3-4 years.

PubMed

Guimaraes, Sandra; Fernandes, Tiago; Costa, Patrício; Silva, Eduardo

2018-06-01

To determine a normative of tumbling E optotype and its feasibility for visual acuity (VA) assessment in children aged 3-4 years. A cross-sectional study of 1756 children who were invited to participate in a comprehensive non-invasive eye exam. Uncorrected monocular VA with crowded tumbling E with a comprehensive ophthalmological examination were assessed. Testability rates of the whole population and VA of the healthy children for different age subgroups, gender, school type and the order of testing in which the ophthalmological examination was performed were evaluated. The overall testability rate was 95% (92% and 98% for children aged 3 and 4 years, respectively). The mean VA of the first-day assessment (first-VA) and best-VA over 2 days' assessments was 0.14 logMAR (95% CI 0.14 to 0.15) (decimal=0.72, 95% CI 0.71 to 0.73) and 0.13 logMAR (95% CI 0.13 to 0.14) (decimal=0.74, 95% CI 0.73 to 0.74). Analysis with age showed differences between groups in first-VA (F(3,1146)=10.0; p<0.001; η2=0.026) and best-VA (F(3,1155)=8.8; p<0.001; η2=0.022). Our normative was very highly correlated with previous reported HOTV-Amblyopia-Treatment-Study (HOTV-ATS) (first-VA, r=0.97; best-VA, r=0.99), with 0.8 to 0.7 lines consistent overestimation for HOTV-ATS as described in literature. Overall false-positive referral was 1.3%, being specially low regarding anisometropias of ≥2 logMAR lines (0.17%). Interocular difference ≥1 line VA logMAR was not associated with age (p=0.195). This is the first normative for European Caucasian children with single crowded tumbling E in healthy eyes and the largest study comparing 3 and 4 years old testability. Testability rates are higher than found in literature with other optotypes, especially in children aged 3 years, where we found 5%-11% better testability rates. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

The effect of ISM absorption on stellar activity measurements and its relevance for exoplanet studies

NASA Astrophysics Data System (ADS)

Fossati, L.; Marcelja, S. E.; Staab, D.; Cubillos, P. E.; France, K.; Haswell, C. A.; Ingrassia, S.; Jenkins, J. S.; Koskinen, T.; Lanza, A. F.; Redfield, S.; Youngblood, A.; Pelzmann, G.

2017-05-01

Past ultraviolet and optical observations of stars hosting close-in Jupiter-mass planets have shown that some of these stars present an anomalously low chromospheric activity, significantly below the basal level. For the hot Jupiter planet host WASP-13, observations have shown that the apparent lack of activity is possibly caused by absorption from the intervening interstellar medium (ISM). Inspired by this result, we study the effect of ISM absorption on activity measurements (S and log R 'HK indices) for main-sequence late-type stars. To this end, we employ synthetic stellar photospheric spectra combined with varying amounts of chromospheric emission and ISM absorption. We present the effect of ISM absorption on activity measurements by varying several instrumental (spectral resolution), stellar (projected rotational velocity, effective temperature, and chromospheric emission flux), and ISM parameters (relative velocity between stellar and ISM Ca II lines, broadening b-parameter, and Ca II column density). We find that for relative velocities between the stellar and ISM lines smaller than 30-40 km s-1 and for ISM Ca II column densities log NCaII ⪆ 12, the ISM absorption has a significant influence on activity measurements. Direct measurements and three dimensional maps of the Galactic ISM absorption indicate that an ISM Ca II column density of log NCaII = 12 is typically reached by a distance of about 100 pc along most sight lines. In particular, for a Sun-like star lying at a distance greater than 100 pc, we expect a depression (bias) in the log R'HK value larger than 0.05-0.1 dex, about the same size as the typical measurement and calibration uncertainties on this parameter. This work shows that the bias introduced by ISM absorption must always be considered when measuring activity for stars lying beyond 100 pc. We also consider the effect of multiple ISM absorption components. We discuss the relevance of this result for exoplanet studies and revise the latest results on stellar activity versus planet surface gravity correlation. We finally describe methods with which it would be possible to account for ISM absorption in activity measurements and provide a code to roughly estimate the magnitude of the bias. Correcting for the ISM absorption bias may allow one to identify the origin of the anomaly in the activity measured for some planet-hosting stars.

[Impact of Different Percent Tissue Altered Values on Visual Outcome after Refractive Small Incision Lenticule Extraction (ReLEx SMILE)].

PubMed

Breyer, D R H; Hagen, P; Kaymak, H; Klabe, K; Auffarth, G U; Kretz, F T A

2017-01-01

Purpose   To compare the visual outcomes after ReLEx SMILE treatment of eyes with low and high PTA values (PTA: percent tissue altered) within a follow-up period of up to 3 years and to assess whether a high PTA value might contribute to the development of keratectasia, as is the case for LASIK. Methods   This retrospective analysis comprises results from 313 eyes (189 patients) with a PTA value of less than 40 % and of 373 eyes (213 patients) with a PTA value of at least 40 %. Preoperatively and up to 3 years after SMILE surgery, refraction values, monocular corrected (CDVA) and uncorrected distant visual acuity (UDVA) and wavefront data were evaluated. Results   One to 3 years after surgery, the group with PTA < 40 % (PTA ≥ 40 %) had a loss of two Snellen lines in 1.1 % (0.0 %) of the cases. Loss of one line occurred in 1.1 % (3.6 %) of the eyes, whereas 97.7 % (96.4 %) remained unchanged or gained lines. With respect to predictability of the spherical equivalent, 92.0 % (78.6 %) of the eyes were within ± 0.5D and 97.7 % (92.9 %) were within ± 1.0D. The group with high PTA values displayed a slightly but significantly greater undercorrection of about 0,25D. 74.4 % (71.8 %) achieved UDVA of at least 20/20 and 96.5 % (87.1 %) achieved at least 20/25. The mean UDVA was - 0.03 ± 0.10logMAR (0.01 ± 0.12logMAR) and its mean difference to the preoperative CDVA was 0.00 ± 0.09logMAR (0.03 ± 0.12logMAR). Conclusion   ReLEx SMILE is a safe and effective corneal refractive treatment, even for PTA values of 40 % and more. Eyes with high PTA values did not display any evidence of keratectasia development within the 3-year follow-up of this study. Georg Thieme Verlag KG Stuttgart · New York.

Comparison of star formation rates from Hα and infrared luminosity as seen by Herschel

NASA Astrophysics Data System (ADS)

Domínguez Sánchez, H.; Mignoli, M.; Pozzi, F.; Calura, F.; Cimatti, A.; Gruppioni, C.; Cepa, J.; Sánchez Portal, M.; Zamorani, G.; Berta, S.; Elbaz, D.; Le Floc'h, E.; Granato, G. L.; Lutz, D.; Maiolino, R.; Matteucci, F.; Nair, P.; Nordon, R.; Pozzetti, L.; Silva, L.; Silverman, J.; Wuyts, S.; Carollo, C. M.; Contini, T.; Kneib, J.-P.; Le Fèvre, O.; Lilly, S. J.; Mainieri, V.; Renzini, A.; Scodeggio, M.; Bardelli, S.; Bolzonella, M.; Bongiorno, A.; Caputi, K.; Coppa, G.; Cucciati, O.; de la Torre, S.; de Ravel, L.; Franzetti, P.; Garilli, B.; Iovino, A.; Kampczyk, P.; Knobel, C.; Kovač, K.; Lamareille, F.; Le Borgne, J.-F.; Le Brun, V.; Maier, C.; Magnelli, B.; Pelló, R.; Peng, Y.; Perez-Montero, E.; Ricciardelli, E.; Riguccini, L.; Tanaka, M.; Tasca, L. A. M.; Tresse, L.; Vergani, D.; Zucca, E.

2012-10-01

We empirically MD test the relation between the SFR(LIR) derived from the infrared luminosity, LIR, and the SFR(Hα) derived from the Hα emission line luminosity using simple conversion relations. We use a sample of 474 galaxies at z = 0.06-0.46 with both Hα detection [from 20k redshift Cosmological Evolution (zCOSMOS) survey] and new far-IR Herschel data (100 and 160 μm). We derive SFR(Hα) from the Hα extinction corrected emission line luminosity. We find a very clear trend between E(B - V) and LIR that allows us to estimate extinction values for each galaxy even if the Hβ emission line measurement is not reliable. We calculate the LIR by integrating from 8 up to 1000 μm the spectral energy distribution (SED) that is best fitting our data. We compare the SFR(Hα) with the SFR(LIR). We find a very good agreement between the two star formation rate (SFR) estimates, with a slope of m = 1.01 ± 0.03 in the log SFR(LIR) versus log SFR(Hα) diagram, a normalization constant of a = -0.08 ± 0.03 and a dispersion of σ = 0.28 dex. We study the effect of some intrinsic properties of the galaxies in the SFR(LIR)-SFR(Hα) relation, such as the redshift, the mass, the specific star formation rate (SSFR) or the metallicity. The metallicity is the parameter that affects most the SFR comparison. The mean ratio of the two SFR estimators log[SFR(LIR)/SFR(Hα)] varies by ˜0.6 dex from metal-poor to metal-rich galaxies [8.1 < log (O/H) + 12 < 9.2]. This effect is consistent with the prediction of a theoretical model for the dust evolution in spiral galaxies. Considering different morphological types, we find a very good agreement between the two SFR indicators for the Sa, Sb and Sc morphologically classified galaxies, both in slope and in normalization. For the Sd, irregular sample (Sd/Irr), the formal best-fitting slope becomes much steeper (m = 1.62 ± 0.43), but it is still consistent with 1 at the 1.5σ level, because of the reduced statistics of this sub-sample. Herschel is a European Space Agency (ESA) space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

Encouraging Student Participation in an On-Line Course Using "Pull" Initiatives

ERIC Educational Resources Information Center

Peachey, Paul; Jones, Paul; Jones, Amanda

2006-01-01

This paper presents an empirical study involving initiatives that encouraged students to log onto online courses in entrepreneurship delivered by the University of Glamorgan. The aim of the research was to explore items of interest to the online students that may increase participation in the forums and hence potentially enhanced engagement with…

Proceedings: Conference on Computers in Chemical Education and Research, Dekalb, Illinois, 19-23 July 1971.

ERIC Educational Resources Information Center

1971

Computers have effected a comprehensive transformation of chemistry. Computers have greatly enhanced the chemist's ability to do model building, simulations, data refinement and reduction, analysis of data in terms of models, on-line data logging, automated control of experiments, quantum chemistry and statistical and mechanical calculations, and…

OLTARIS: On-Line Tool for the Assessment of Radiation in Space

NASA Technical Reports Server (NTRS)

Singleterry, Robert C., Jr.; Blattnig, Steve R.; Clowdsley, Martha S.; Qualls, Garry D.; Sandridge, Chris A.; Simonsen, Lisa C.; Norbury, John W.; Slaba, Tony C.; Walker, Steve A.; Badavi, Francis F.;

Volumes and surface areas of pendular rings

USGS Publications Warehouse

Rose, W.

1958-01-01

A packing of spheres is taken as a suitable model of porous media. The packing may be regular and the sphere size may be uniform, but in general, both should be random. Approximations are developed to give the volumes and surface areas of pendular rings that exist at points of sphere contact. From these, the total free volume and interfacial specific surface area are derived as expressive of the textural character of the packing. It was found that the log-log plot of volumes and surface areas of pendular rings vary linearly with the angle made by the line joining the sphere centers and the line from the center of the largest sphere to the closest edge of the pendular ring. The relationship, moreover, was found not to be very sensitive to variation in the size ratio of the spheres in contact. It also was found that the addition of pendular ring material to various sphere packings results in an unexpected decrease in the surface area of the boundaries that confine the resulting pore space. ?? 1958 The American Institute of Physics.

Non-LTE Line-Blanketed Model Atmospheres of B-type Stars

NASA Astrophysics Data System (ADS)

Lanz, T.; Hubeny, I.

2005-12-01

We present an extension of our OSTAR2002 grid of NLTE model atmospheres to B-type stars. We have calculated over 1,300 metal line-blanketed, NLTE, plane-parallel, hydrostatic model atmospheres for the basic parameters appropriate to B stars. The grid covers 16 effective temperatures from 15,000 to 30,000 K, with 1000 K steps, 13 surface gravities, log g≤ 4.75 down to the Eddington limit, and 5 compositions (2, 1, 0.5, 0.2, and 0.1 times solar). We have adopted a microturbulent velocity of 2 km/s for all models. In the lower surface gravity range (log g≤ 3.0), we supplemented the main grid with additional model atmospheres accounting for higher microtutbulent velocity (10 km/s) and for alterated surface composition (He and N-rich, C-deficient), as observed in B supergiants. The models incorporate basically all known atomic levels of 46 ions of H, He, C, N, O, Ne, Mg, Al, Si, S, and Fe, which are grouped into 1127 superlevels. Models and spectra will be available at our Web site, http://nova.astro.umd.edu.

Dynamin-like protein 1 at the Golgi complex: A novel component of the sorting/targeting machinery en route to the plasma membrane

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonekamp, Nina A.; Vormund, Kerstin; Jacob, Ralf

2010-12-10

The final step in the liberation of secretory vesicles from the trans-Golgi network (TGN) involves the mechanical action of the large GTPase dynamin as well as conserved dynamin-independent fission mechanisms, e.g. mediated by Brefeldin A-dependent ADP-ribosylated substrate (BARS). Another member of the dynamin family is the mammalian dynamin-like protein 1 (DLP1/Drp1) that is known to constrict and tubulate membranes, and to divide mitochondria and peroxisomes. Here, we examined a potential role for DLP1 at the Golgi complex. DLP1 localized to the Golgi complex in some but not all cell lines tested, thus explaining controversial reports on its cellular distribution. Aftermore » silencing of DLP1, an accumulation of the apical reporter protein YFP-GL-GPI, but not the basolateral reporter VSVG-SP-GFP at the Golgi complex was observed. A reduction in the transport of YFP-GL-GPI to the plasma membrane was confirmed by surface immunoprecipitation and TGN-exit assays. In contrast, YFP-GL-GPI trafficking was not disturbed in cells silenced for BARS, which is involved in basolateral sorting and trafficking of VSVG-SP-GFP in COS-7 cells. Our data indicate a new role for DLP1 at the Golgi complex and thus a role for DLP1 as a novel component of the apical sorting machinery at the TGN is discussed.« less

EUV lines observed with EIS/Hinode in a solar prominence

NASA Astrophysics Data System (ADS)

Labrosse, N.; Schmieder, B.; Heinzel, P.; Watanabe, T.

2011-07-01

Context. During a multi-wavelength observation campaign with Hinode and ground-based instruments, a solar prominence was observed for three consecutive days as it crossed the western limb of the Sun in April 2007. Aims: We report on observations obtained on 26 April 2007 using EIS (Extreme ultraviolet Imaging Spectrometer) on Hinode. They are analysed to provide a qualitative diagnostic of the plasma in different parts of the prominence. Methods: After correcting for instrumental effects, the rasters at different wavelengths are presented. Several regions within the same prominence are identified for further analysis. Selected profiles for lines with formation temperatures between log (T) = 4.7 and log (T) = 6.3, as well as their integrated intensities, are given. The profiles of coronal, transition region, and He ii lines are discussed. We pay special attention to the He ii line, which is blended with coronal lines. Results: Some quantitative results are obtained by analysing the line profiles. They confirm that depression in EUV lines can be interpreted in terms of two mechanisms: absorption of coronal radiation by the hydrogen and neutral helium resonance continua, and emissivity blocking. We present estimates of the He ii line integrated intensity in different parts of the prominence according to different scenarios for the relative contribution of absorption and emissivity blocking to the coronal lines blended with the He ii line. We estimate the contribution of the He ii 256.32 Å line to the He ii raster image to vary between ~44% and 70% of the raster's total intensity in the prominence according to the different models used to take into account the blending coronal lines. The inferred integrated intensities of the He ii 256 Å line are consistent with the theoretical intensities obtained with previous 1D non-LTE radiative transfer calculations, yielding a preliminary estimate of the central temperature of 8700 K, a central pressure of 0.33 dyn cm-2, and a column mass of 2.5 × 10-4 g cm-2. The corresponding theoretical hydrogen column density (1020 cm-2) is about two orders of magnitude higher than those inferred from the opacity estimates at 195 Å. The non-LTE calculations indicate that the He ii 256.32 Å line is essentially formed in the prominence-to-corona transition region by resonant scattering of the incident radiation. The movie associated to Fig. 2 is available in electronic form at http://www.aanda.org

A Task Analysis of the Shift from Teacher Instructions to Self-Instructions in Performing an In-Common Task.

ERIC Educational Resources Information Center

Grote, Irene; And Others

1996-01-01

Three preschoolers performed four sorts with stimulus cards--an untaught target sort and three directly taught alternating sorts considered to self-instruct the target performance. Accuracy increased first in the skill sorts and then in the untaught target sorts. All subjects generalized to new target sorts. Correct spontaneous self-instructions…

To sort or not to sort: the impact of spike-sorting on neural decoding performance.

PubMed

Todorova, Sonia; Sadtler, Patrick; Batista, Aaron; Chase, Steven; Ventura, Valérie

2014-10-01

Brain-computer interfaces (BCIs) are a promising technology for restoring motor ability to paralyzed patients. Spiking-based BCIs have successfully been used in clinical trials to control multi-degree-of-freedom robotic devices. Current implementations of these devices require a lengthy spike-sorting step, which is an obstacle to moving this technology from the lab to the clinic. A viable alternative is to avoid spike-sorting, treating all threshold crossings of the voltage waveform on an electrode as coming from one putative neuron. It is not known, however, how much decoding information might be lost by ignoring spike identity. We present a full analysis of the effects of spike-sorting schemes on decoding performance. Specifically, we compare how well two common decoders, the optimal linear estimator and the Kalman filter, reconstruct the arm movements of non-human primates performing reaching tasks, when receiving input from various sorting schemes. The schemes we tested included: using threshold crossings without spike-sorting; expert-sorting discarding the noise; expert-sorting, including the noise as if it were another neuron; and automatic spike-sorting using waveform features. We also decoded from a joint statistical model for the waveforms and tuning curves, which does not involve an explicit spike-sorting step. Discarding the threshold crossings that cannot be assigned to neurons degrades decoding: no spikes should be discarded. Decoding based on spike-sorted units outperforms decoding based on electrodes voltage crossings: spike-sorting is useful. The four waveform based spike-sorting methods tested here yield similar decoding efficiencies: a fast and simple method is competitive. Decoding using the joint waveform and tuning model shows promise but is not consistently superior. Our results indicate that simple automated spike-sorting performs as well as the more computationally or manually intensive methods used here. Even basic spike-sorting adds value to the low-threshold waveform-crossing methods often employed in BCI decoding.

To sort or not to sort: the impact of spike-sorting on neural decoding performance

NASA Astrophysics Data System (ADS)

Todorova, Sonia; Sadtler, Patrick; Batista, Aaron; Chase, Steven; Ventura, Valérie

2014-10-01

Objective. Brain-computer interfaces (BCIs) are a promising technology for restoring motor ability to paralyzed patients. Spiking-based BCIs have successfully been used in clinical trials to control multi-degree-of-freedom robotic devices. Current implementations of these devices require a lengthy spike-sorting step, which is an obstacle to moving this technology from the lab to the clinic. A viable alternative is to avoid spike-sorting, treating all threshold crossings of the voltage waveform on an electrode as coming from one putative neuron. It is not known, however, how much decoding information might be lost by ignoring spike identity. Approach. We present a full analysis of the effects of spike-sorting schemes on decoding performance. Specifically, we compare how well two common decoders, the optimal linear estimator and the Kalman filter, reconstruct the arm movements of non-human primates performing reaching tasks, when receiving input from various sorting schemes. The schemes we tested included: using threshold crossings without spike-sorting; expert-sorting discarding the noise; expert-sorting, including the noise as if it were another neuron; and automatic spike-sorting using waveform features. We also decoded from a joint statistical model for the waveforms and tuning curves, which does not involve an explicit spike-sorting step. Main results. Discarding the threshold crossings that cannot be assigned to neurons degrades decoding: no spikes should be discarded. Decoding based on spike-sorted units outperforms decoding based on electrodes voltage crossings: spike-sorting is useful. The four waveform based spike-sorting methods tested here yield similar decoding efficiencies: a fast and simple method is competitive. Decoding using the joint waveform and tuning model shows promise but is not consistently superior. Significance. Our results indicate that simple automated spike-sorting performs as well as the more computationally or manually intensive methods used here. Even basic spike-sorting adds value to the low-threshold waveform-crossing methods often employed in BCI decoding.

Sorting nexin-2 is associated with tubular elements of the early endosome, but is not essential for retromer-mediated endosome-to-TGN transport

PubMed Central

Carlton, Jez G.; Bujny, Miriam V.; Peter, Brian J.; Oorschot, Viola M. J.; Rutherford, Anna; Arkell, Rebecca S.; Klumperman, Judith; McMahon, Harvey T.; Cullen, Peter J.

2006-01-01

Summary Sorting nexins are a large family of phox-homology-domain-containing proteins that have been implicated in the control of endosomal sorting. Sorting nexin-1 is a component of the mammalian retromer complex that regulates retrieval of the cation-independent mannose 6-phosphate receptor from endosomes to the trans-Golgi network. In yeast, retromer is composed of Vps5p (the orthologue of sorting nexin-1), Vps17p (a related sorting nexin) and a cargo selective subcomplex composed of Vps26p, Vps29p and Vps35p. With the exception of Vps17p, mammalian orthologues of all yeast retromer components have been identified. For Vps17p, one potential mammalian orthologue is sorting nexin-2. Here we show that, like sorting nexin-1, sorting nexin-2 binds phosphatidylinositol 3-monophosphate and phosphatidylinositol 3,5-bisphosphate, and possesses a Bin/Amphiphysin/Rvs domain that can sense membrane curvature. However, in contrast to sorting nexin-1, sorting nexin-2 could not induce membrane tubulation in vitro or in vivo. Functionally, we show that endogenous sorting nexin-1 and sorting nexin-2 co-localise on high curvature tubular elements of the 3-phosphoinositide-enriched early endosome, and that suppression of sorting nexin-2 does not perturb the degradative sorting of receptors for epidermal growth factor or transferrin, nor the steady-state distribution of the cation-independent mannose 6-phosphate receptor. However, suppression of sorting nexin-2 results in a subtle alteration in the kinetics of cation-independent mannose 6-phosphate receptor retrieval. These data suggest that although sorting nexin-2 may be a component of the retromer complex, its presence is not essential for the regulation of endosome-to-trans Golgi network retrieval of the cation-independent mannose 6-phosphate receptor. PMID:16179610

Process and product in writing--a methodological contribution to the assessment of written narratives in 8-12-year-old Swedish children using ScriptLog.

PubMed

Asker-Arnason, Lena; Wengelin, Asa; Sahlén, Birgitta

2008-01-01

Twenty-seven children, with typical language development (TLD), 8-10 years old and 10-12 years old, were assessed with keystroke-logging in order to investigate their narrative writing. Measures of the writing process and the written product were used. One purpose was to explore how children produce written narratives in on-line production, and to relate the writing process to the written product. The results showed that those children who produced the final text faster, also wrote stories that comprised of more words. In the group of older children, children with better narrative ability used less pause time than those with worse ability, and the girls were faster writers than the boys. We believe that keystroke-logging gives valuable information for the assessment of young children's writing and that it is a potentially valid assessment tool for children from about 10 years of age.

ZFIRE: 3D Modeling of Rotation, Dispersion, and Angular Momentum of Star-forming Galaxies at z ∼ 2

NASA Astrophysics Data System (ADS)

Alcorn, Leo Y.; Tran, Kim-Vy; Glazebrook, Karl; Straatman, Caroline M.; Cowley, Michael; Forrest, Ben; Kacprzak, Glenn G.; Kewley, Lisa J.; Labbé, Ivo; Nanayakkara, Themiya; Spitler, Lee R.; Tomczak, Adam; Yuan, Tiantian

2018-05-01

We perform a kinematic and morphological analysis of 44 star-forming galaxies at z ∼ 2 in the COSMOS legacy field using near-infrared spectroscopy from Keck/MOSFIRE and F160W imaging from CANDELS/3D-HST as part of the ZFIRE survey. Our sample consists of cluster and field galaxies from 2.0 < z < 2.5 with K-band multi-object slit spectroscopic measurements of their Hα emission lines. Hα rotational velocities and gas velocity dispersions are measured using the Heidelberg Emission Line Algorithm (HELA), which compares directly to simulated 3D data cubes. Using a suite of simulated emission lines, we determine that HELA reliably recovers input S 0.5 and angular momentum at small offsets, but V 2.2/σ g values are offset and highly scattered. We examine the role of regular and irregular morphology in the stellar mass kinematic scaling relations, deriving the kinematic measurement S 0.5, and finding {log}({S}0.5)=(0.38+/- 0.07){log}(M/{M}ȯ -10)+(2.04+/- 0.03) with no significant offset between morphological populations and similar levels of scatter (∼0.16 dex). Additionally, we identify a correlation between M ⋆ and V 2.2/σ g for the total sample, showing an increasing level of rotation dominance with increasing M ⋆, and a high level of scatter for both regular and irregular galaxies. We estimate the specific angular momenta (j disk) of these galaxies and find a slope of 0.36 ± 0.12, shallower than predicted without mass-dependent disk growth, but this result is possibly due to measurement uncertainty at M ⋆ < 9.5 However, through a Kolmogorov–Smirnov test we find irregular galaxies to have marginally higher j disk values than regular galaxies, and high scatter at low masses in both populations.

A probabilistic approach to emission-line galaxy classification

NASA Astrophysics Data System (ADS)

de Souza, R. S.; Dantas, M. L. L.; Costa-Duarte, M. V.; Feigelson, E. D.; Killedar, M.; Lablanche, P.-Y.; Vilalta, R.; Krone-Martins, A.; Beck, R.; Gieseke, F.

2017-12-01

We invoke a Gaussian mixture model (GMM) to jointly analyse two traditional emission-line classification schemes of galaxy ionization sources: the Baldwin-Phillips-Terlevich (BPT) and WH α versus [N II]/H α (WHAN) diagrams, using spectroscopic data from the Sloan Digital Sky Survey Data Release 7 and SEAGal/STARLIGHT data sets. We apply a GMM to empirically define classes of galaxies in a three-dimensional space spanned by the log [O III]/H β, log [N II]/H α and log EW(H α) optical parameters. The best-fitting GMM based on several statistical criteria suggests a solution around four Gaussian components (GCs), which are capable to explain up to 97 per cent of the data variance. Using elements of information theory, we compare each GC to their respective astronomical counterpart. GC1 and GC4 are associated with star-forming galaxies, suggesting the need to define a new starburst subgroup. GC2 is associated with BPT's active galactic nuclei (AGN) class and WHAN's weak AGN class. GC3 is associated with BPT's composite class and WHAN's strong AGN class. Conversely, there is no statistical evidence - based on four GCs - for the existence of a Seyfert/low-ionization nuclear emission-line region (LINER) dichotomy in our sample. Notwithstanding, the inclusion of an additional GC5 unravels it. The GC5 appears associated with the LINER and passive galaxies on the BPT and WHAN diagrams, respectively. This indicates that if the Seyfert/LINER dichotomy is there, it does not account significantly to the global data variance and may be overlooked by standard metrics of goodness of fit. Subtleties aside, we demonstrate the potential of our methodology to recover/unravel different objects inside the wilderness of astronomical data sets, without lacking the ability to convey physically interpretable results. The probabilistic classifications from the GMM analysis are publicly available within the COINtoolbox at https://cointoolbox.github.io/GMM_Catalogue/.

The requirement for freshly isolated human colorectal cancer (CRC) cells in isolating CRC stem cells.

PubMed

Fan, F; Bellister, S; Lu, J; Ye, X; Boulbes, D R; Tozzi, F; Sceusi, E; Kopetz, S; Tian, F; Xia, L; Zhou, Y; Bhattacharya, R; Ellis, L M

2015-02-03

Isolation of colorectal cancer (CRC) cell populations enriched for cancer stem cells (CSCs) may facilitate target identification. There is no consensus regarding the best methods for isolating CRC stem cells (CRC-SCs). We determined the suitability of various cellular models and various stem cell markers for the isolation of CRC-SCs. Established human CRC cell lines, established CRC cell lines passaged through mice, patient-derived xenograft (PDX)-derived cells, early passage/newly established cell lines, and cells directly from clinical specimens were studied. Cells were FAC-sorted for the CRC-SC markers CD44, CD133, and aldehyde dehydrogenase (ALDH). Sphere formation and in vivo tumorigenicity studies were used to validate CRC-SC enrichment. None of the markers studied in established cell lines, grown either in vitro or in vivo, consistently enriched for CRC-SCs. In the three other cellular models, CD44 and CD133 did not reliably enrich for stemness. In contrast, freshly isolated PDX-derived cells or early passage/newly established CRC cell lines with high ALDH activity formed spheres in vitro and enhanced tumorigenicity in vivo, whereas cells with low ALDH activity did not. PDX-derived cells, early passages/newly established CRC cell lines and cells from clinical specimen with high ALDH activity can be used to identify CRC-SC-enriched populations. Established CRC cell lines should not be used to isolate CSCs.

Metallicities of Emission-Line Galaxies from HST ACS PEARS and HST WFC3 ERS Grism Spectroscopy at 0.6 is less than z is less than 2.4

NASA Technical Reports Server (NTRS)

Xia, Lifang; Malhotra, Sangetta; Rhoads, James; Pirzkal, Nor; Straughn, Amber; Finkelstein, Steven; Cohen, Seth; Kuntschner, Harald; Walsh, Jeremy; Windhorst, Rogier A.;

Bread: CDC 7600 program that processes Spent Fuel Test Climax data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hage, G.L.

BREAD will process a family of files copied from a data tape made by Hewlett-Packard equipment employed for data acquisition on the Spent Fuel Test-Climax at NTS. Tapes are delivered to Livermore approximately monthly. The process at this stage consists of four steps: read the binary files and convert from H-P 16-bit words to CDC 7600 60-bit words; check identification and data ranges; write the data in 6-bit ASCII (BCD) format, one data point per line; then sort the file by identifier and time.

A Comparison of Six Repair Scheduling Policies for the P3 Aircraft.

DTIC Science & Technology

1988-03-01

each type component i: RHO(i) = LAMBDA(i) / SRATE(i) LINEUPti) - RHO(i) x COUNT(i) Step 14c: Sort components by LINEUP (i), reorder position in line in...favor of the largest LINEUP (i). Return to step 7. Dynamic 3 Model Modifications: Step 14a: Count the number of operating parts of each component i...STOCK(i)). Step 14b: Assign a priority to each component type based on the count of current stock in step 14a: LINEUP (i) < LINEUP (J) iff STOCK(i

DOE Office of Scientific and Technical Information (OSTI.GOV)

Latour, M.; Fontaine, G.; Brassard, P.

As part of a multifaceted effort to better exploit the asteroseismological potential of the pulsating sdB star Feige 48, we present an improved spectroscopic analysis of that star based on new grids of NLTE, fully line-blanketed model atmospheres. To that end, we gathered four high signal-to-noise ratio time-averaged optical spectra of varying spectral resolutions from 1.0 Å to 8.7 Å, and we made use of the results of four independent studies to fix the abundances of the most important metals in the atmosphere of Feige 48. The mean atmospheric parameters we obtained from our four spectra of Feige 48 are:more » T {sub eff} = 29,850 ± 60 K, log g = 5.46 ± 0.01, and log N(He)/N(H) = –2.88 ± 0.02. We also modeled, for the first time, the He II line at 1640 Å from the STIS archive spectrum of the star, and with this line we found an effective temperature and a surface gravity that match well with the values obtained with the optical data. With some fine tuning of the abundances of the metals visible in the optical domain, we were able to achieve a very good agreement between our best available spectrum and our best-fitting synthetic one. Our derived atmospheric parameters for Feige 48 are in rather good agreement with previous estimates based on less sophisticated models. This underlines the relatively small effects of the NLTE approach combined with line blanketing in the atmosphere of this particular star, implying that the current estimates of the atmospheric parameters of Feige 48 are reliable and secure.« less

L'CO/LFIR Relations with CO Rotational Ladders of Galaxies Across the Herschel SPIRE Archive

NASA Technical Reports Server (NTRS)

Kamenetzky, J.; Rangwala, N.; Glenn, J.; Maloney, P. R.; Conley, A.

2015-01-01

We present a catalog of all CO (carbon monoxide) (J (total angular momentum quantum number) equals 1-0 through J equals 13-12), [CI], and [NII] lines available from extragalactic spectra from the Herschel SPIRE (Spectral and Photometric Imaging Receiver) Fourier Transform Spectrometer (FTS) archive combined with observations of the low-J CO lines from the literature and from the Arizona Radio Observatory. This work examines the relationships between L (sub FIR (Far Infra Red)), L prime (sub CO), and L (sub CO) / L (sub CO, 1-0). We also present a new method for estimating probability distribution functions (PDFs) from marginal signal-to-noise ratio Herschel FTS spectra, which takes into account the instrumental "ringing" and the resulting highly correlated nature of the spectra. The slopes of Log (L (sub FIR)) versus Log (L prime (sub CO)) are linear for all mid- to high-J CO lines. The mid- to high-J CO luminosity relative to CO J equals 1-0 increases with increasing L (sub FIR), indicating higher excitement of the molecular gas, though these ratios do not exceed approximately 100. The luminosities relative to CO J equals 1-0 remain relatively at from J equals 6-5 through J equals13-2, across many orders of magnitude of L (sub FIR). Qualitative comparisons to current theoretical models do not match these flat SLED (spectral line energy distributions) shapes, indicating the need for more comprehensive modeling of the excitation processes of warm molecular gas in nearby galaxies.

The Rest-frame Optical Spectroscopic Properties of Lyalpha-emitters at Z~2.5: The Physical Origins of Strong Lyalpha Emission

NASA Astrophysics Data System (ADS)

Trainor, Ryan F.; Strom, Allison L.; Steidel, Charles C.; Rudie, Gwen C.

2016-12-01

We present the rest-frame optical spectroscopic properties of 60 faint (R AB ˜ 27; L ˜ 0.1 L *) Lyα-selected galaxies (LAEs) at z ≈ 2.56. These LAEs also have rest-UV spectra of their Lyα emission line morphologies, which trace the effects of interstellar and circumgalactic gas on the escape of Lyα photons. We find that the LAEs have diverse rest-optical spectra, but their average spectroscopic properties are broadly consistent with the extreme low-metallicity end of the populations of continuum-selected galaxies selected at z ≈ 2-3. In particular, the LAEs have extremely high [O III] λ5008/Hβ ratios (log([O III]/Hβ) ˜ 0.8) and low [N II] λ6585/Hα ratios (log([N II]/Hα) < 1.15). Coupled with a detection of the [O III] λ4364 auroral line, these measurements indicate that the star-forming regions in faint LAEs are characterized by high electron temperatures (T e ≈ 1.8 × 104 K), low oxygen abundances (12 + log(O/H) ≈ 8.04, Z neb ≈ 0.22Z ⊙), and high excitations with respect to their more luminous continuum-selected analogs. Several of our faintest LAEs have line ratios consistent with even lower metallicities, including six with 12 + log(O/H) ≈ 6.9-7.4 (Z neb ≈ 0.02-0.05Z ⊙). We interpret these observations in light of new models of stellar evolution (including binary interactions) that have been shown to produce long-lived populations of hot, massive stars at low metallicities. We find that strong, hard ionizing continua are required to reproduce our observed line ratios, suggesting that faint galaxies are efficient producers of ionizing photons and important analogs of reionization-era galaxies. Furthermore, we investigate the physical trends accompanying Lyα emission across the largest current sample of combined Lyα and rest-optical galaxy spectroscopy, including both the 60 KBSS-Lyα LAEs and 368 more luminous galaxies at similar redshifts. We find that the net Lyα emissivity (parameterized by the Lyα equivalent width) is strongly correlated with nebular excitation and ionization properties and weakly correlated with dust attenuation, suggesting that metallicity plays a strong role in determining the observed properties of these galaxies by modulating their stellar spectra, nebular excitation, and dust content. Based on data obtained at the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and NASA, and was made possible by the generous financial support of the W.M. Keck Foundation.

Effects of hygienic treatments during slaughtering on microbial dynamics and contamination of sheep meat.

PubMed

Omer, Mohamed K; Hauge, Sigrun J; Østensvik, Øyvin; Moen, Birgitte; Alvseike, Ole; Røtterud, Ole-Johan; Prieto, Miguel; Dommersnes, Sissel; Nesteng, Ole H; Nesbakken, Truls

2015-02-02

The aims of this study were to investigate bacterial dynamics in the sheep meat chain, from fleece to meat trimmings, using both quantitative and qualitative analyses, and to study the effects on microbial load associated with the hygienic interventions of: i) shearing sheep immediately before slaughter, ii) manual steam vacuum pasteurisation, iii) hot water pasteurisation of carcasses, followed by iv) chilling. A further aim was to provide evidence to determine whether or not unshorn sheep should be handled in a processing line separate from that of shorn sheep in Norwegian abattoirs. A total of 176 surface swab samples were collected from three sites along the value chain: i) on fleeces, ii) on carcasses at the end of the slaughter line, and iii) on carcasses after chilling for 24h, and 32 samples were collected from meat trimmings. The results showed that Aerobic Plate Counts (APC) were lower for the shorn group compared to the unshorn group, both on carcasses before chilling and after chilling (difference of 0.8 and 0.9logCFU/1000cm(2) (p≤0.05), respectively) and in meat trimmings (difference of 0.5logCFU/g (p≤0.05)). Hygienic treatments were used on carcasses derived from unshorn sheep, and steam vacuum treatment reduced Escherichia coli, Enterobacteriaceae, and APC before chilling by 1.2, 1.0, and 0.6logCFU/1000cm(2) (p≤0.05), respectively, and hot water pasteurisation, in addition to chilling, reduced E. coli, Enterobacteriaceae, and APC by 0.7, 1.0, and 0.9logCFU/1000cm(2) (p≤0.05), respectively, compared with untreated carcasses. The effect of chilling was shown by the significant reduction of number of carcasses where E. coli were detected; from 65% (13/20) of the shorn group before chilling to 35% (7/20) after chilling, and from 90% (36/40) to 45% (9/20) of the unshorn group. Sequencing of the 16S rRNA gene derived from 316 colonies of Enterobacteriaceae showed a tendency for the relative proportion of the genus Escherichia/Shigella, compared with other genera within Enterobacteriaceae, to be greater for unshorn, untreated sheep than from the other groups at the sampling locations along the meat chain. The study showed that steam vacuum and hot water pasteurisation reduced the contamination of carcasses derived from unshorn sheep, down to the level of the shorn group, and thus can replace the separate processing line for unshorn sheep. Indeed, the low microbial contamination in meat trimmings for all groups indicates that the separate processing line is unnecessary. Copyright © 2014 Elsevier B.V. All rights reserved.

THE REST-FRAME OPTICAL SPECTROSCOPIC PROPERTIES OF LY α -EMITTERS AT z  ∼ 2.5: THE PHYSICAL ORIGINS OF STRONG LY α EMISSION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trainor, Ryan F.; Strom, Allison L.; Steidel, Charles C.

We present the rest-frame optical spectroscopic properties of 60 faint ( R {sub AB} ∼ 27; L ∼ 0.1 L {sub *}) Ly α -selected galaxies (LAEs) at z  ≈ 2.56. These LAEs also have rest-UV spectra of their Ly α emission line morphologies, which trace the effects of interstellar and circumgalactic gas on the escape of Ly α photons. We find that the LAEs have diverse rest-optical spectra, but their average spectroscopic properties are broadly consistent with the extreme low-metallicity end of the populations of continuum-selected galaxies selected at z  ≈ 2–3. In particular, the LAEs have extremely high [O iii]more » λ 5008/H β ratios (log([O iii]/H β ) ∼ 0.8) and low [N ii] λ 6585/H α ratios (log([N ii]/H α ) < 1.15). Coupled with a detection of the [O iii] λ 4364 auroral line, these measurements indicate that the star-forming regions in faint LAEs are characterized by high electron temperatures (T{sub e} ≈ 1.8 × 10{sup 4} K), low oxygen abundances (12 + log(O/H) ≈ 8.04, Z{sub neb} ≈ 0.22 Z {sub ⊙}), and high excitations with respect to their more luminous continuum-selected analogs. Several of our faintest LAEs have line ratios consistent with even lower metallicities, including six with 12 + log(O/H) ≈ 6.9–7.4 (Z {sub neb} ≈ 0.02–0.05 Z{sub ⊙}). We interpret these observations in light of new models of stellar evolution (including binary interactions) that have been shown to produce long-lived populations of hot, massive stars at low metallicities. We find that strong, hard ionizing continua are required to reproduce our observed line ratios, suggesting that faint galaxies are efficient producers of ionizing photons and important analogs of reionization-era galaxies. Furthermore, we investigate the physical trends accompanying Ly α emission across the largest current sample of combined Ly α and rest-optical galaxy spectroscopy, including both the 60 KBSS-Ly α LAEs and 368 more luminous galaxies at similar redshifts. We find that the net Ly α emissivity (parameterized by the Ly α equivalent width) is strongly correlated with nebular excitation and ionization properties and weakly correlated with dust attenuation, suggesting that metallicity plays a strong role in determining the observed properties of these galaxies by modulating their stellar spectra, nebular excitation, and dust content.« less

Design of monitoring system for mail-sorting based on the Profibus S7 series PLC

NASA Astrophysics Data System (ADS)

Zhang, W.; Jia, S. H.; Wang, Y. H.; Liu, H.; Tang, G. C.

2017-01-01

With the rapid development of the postal express, the workload of mail sorting is increasing, but the automatic technology of mail sorting is not mature enough. In view of this, the system uses Siemens S7-300 PLC as the main station controller, PLC of Siemens S7-200/400 is from the station controller, through the man-machine interface configuration software MCGS, PROFIBUS-DP communication, RFID technology and mechanical sorting hand achieve mail classification sorting monitoring. Among them, distinguish mail-sorting by scanning RFID posted in the mail electronic bar code (fixed code), the system uses the corresponding controller on the acquisition of information processing, the processed information transmit to the sorting manipulator by PROFIBUS-DP. The system can realize accurate and efficient mail sorting, which will promote the development of mail sorting technology.

Differences between co-cultures and monocultures in testing the toxicity of particulate matter derived from log wood and pellet combustion.

PubMed

Kasurinen, Stefanie; Happo, Mikko S; Rönkkö, Teemu J; Orasche, Jürgen; Jokiniemi, Jorma; Kortelainen, Miika; Tissari, Jarkko; Zimmermann, Ralf; Hirvonen, Maija-Riitta; Jalava, Pasi I

2018-01-01

In vitro studies with monocultures of human alveolar cells shed deeper knowledge on the cellular mechanisms by which particulate matter (PM) causes toxicity, but cannot account for mitigating or aggravating effects of cell-cell interactions on PM toxicity. We assessed inflammation, oxidative stress as well as cytotoxic and genotoxic effects induced by PM from the combustion of different types of wood logs and softwood pellets in three cell culture setups: two monocultures of either human macrophage-like cells or human alveolar epithelial cells, and a co-culture of these two cell lines. The adverse effects of the PM samples were compared between these setups. We detected clear differences in the endpoints between the mono- and co-cultures. Inflammatory responses were more diverse in the macrophage monoculture and the co-culture compared to the epithelial cells where only an increase of IL-8 was detected. The production of reactive oxygen species was the highest in epithelial cells and macrophages seemed to have protective effects against oxidative stress from the PM samples. With no metabolically active cells at the highest doses, the cytotoxic effects of the PM samples from the wood log combustion were far more pronounced in the macrophages and the co-culture than in the epithelial cells. All samples caused DNA damage in macrophages, whereas only beech and spruce log combustion samples caused DNA damage in epithelial cells. The organic content of the samples was mainly associated with cytotoxicity and DNA damage, while the metal content of the samples correlated with the induction of inflammatory responses. All of the tested PM samples induce adverse effects and the chemical composition of the samples determines which pathway of toxicity is induced. In vitro testing of the toxicity of combustion-derived PM in monocultures of one cell line, however, is inadequate to account for all the possible pathways of toxicity.

Stepwise Guided Photorefractive Keratectomy in Treatment of Irregular Astigmatism After Penetrating Keratoplasty and Deep Anterior Lamellar Keratoplasty.

PubMed

Sorkin, Nir; Einan-Lifshitz, Adi; Abelson, Sagi; Boutin, Tanguy; Showail, Mahmood; Borovik, Armand; Ashkenazy, Zach; Chan, Clara C; Rootman, David S

2017-11-01

To report the outcome of stepwise ablation using topography-guided photorefractive keratectomy to treat irregular astigmatism after either penetrating keratoplasty (PKP) or deep anterior lamellar keratoplasty (DALK). This is a retrospective, interventional analysis including patients with irregular astigmatism after either PKP or DALK, who underwent topography-guided photorefractive keratectomy. The entire cohort was analyzed, as well as the PKP and DALK groups separately. Analysis of factors associated with a better outcome was also performed. Thirty-four eyes of 34 patients (20 PKP patients and 14 DALK patients) aged 47.4 ± 15.9 years were included. Twenty-one patients underwent more than 1 ablation. Refractive stability and a minimal period of 5 months were required before repeat ablation. The average follow-up duration was 17.0 ± 6.0 months. Corrected distance visual acuity (CDVA) improved significantly from 0.22 ± 0.14 logarithm of the minimum angle of resolution (logMAR) to 0.14 ± 0.12 logMAR at final follow-up (P = 0.035). Uncorrected distance visual acuity (UDVA) improved significantly from 0.90 ± 0.54 logMAR to 0.57 ± 0.40 logMAR at final follow-up (P = 0.004). CDVA and UDVA improved by ≥1 Snellen lines in 54.2% and 70.8% of the eyes, respectively, and by ≥3 Snellen lines in 16.7% and 54.2% of the eyes, respectively. Statistically significant improvement was seen in optical aberrometry indices (total root mean square, higher-order aberration root mean square, defocus, coma, trefoil, and spherical aberration). The difference between PKP and DALK in either CDVA (P = 0.562) or UDVA (P = 0.384) improvement was nonsignificant. The stepwise topography-guided photorefractive keratectomy approach in cases of irregular astigmatism after PKP or DALK can help improve visual acuity outcomes. Patients should be appropriately counseled that more than 1 treatment will likely be needed.

Early addition of topical corticosteroids in the treatment of bacterial keratitis.

PubMed

Ray, Kathryn J; Srinivasan, Muthiah; Mascarenhas, Jeena; Rajaraman, Revathi; Ravindran, Meenakshi; Glidden, David V; Oldenburg, Catherine E; Sun, Catherine Q; Zegans, Michael E; McLeod, Stephen D; Acharya, Nisha R; Lietman, Thomas M

2014-06-01

Scarring from bacterial keratitis remains a leading cause of visual loss. To determine whether topical corticosteroids are beneficial as an adjunctive therapy for bacterial keratitis if given early in the course of infection. The Steroids for Corneal Ulcers Trial (SCUT) was a randomized, double-masked, placebo-controlled trial that overall found no effect of adding topical corticosteroids to topical moxifloxacin hydrochloride in bacterial keratitis. Here, we assess the timing of administration of corticosteroids in a subgroup analysis of the SCUT. We define earlier administration of corticosteroids (vs placebo) as addition after 2 to 3 days of topical antibiotics and later as addition after 4 or more days of topical antibiotics. We assess the effect of topical corticosteroids (vs placebo) on 3-month best spectacle-corrected visual acuity in patients who received corticosteroids or placebo earlier vs later. Further analyses were performed for subgroups of patients with non-Nocardia keratitis and those with no topical antibiotic use before enrollment. Patients treated with topical corticosteroids as adjunctive therapy within 2 to 3 days of antibiotic therapy had approximately 1-line better visual acuity at 3 months than did those given placebo (-0.11 logMAR; 95% CI, -0.20 to -0.02 logMAR; P = .01). In patients who had 4 or more days of antibiotic therapy before corticosteroid treatment, the effect was not significant; patients given corticosteroids had 1-line worse visual acuity at 3 months compared with those in the placebo group (0.10 logMAR; 95% CI, -0.02 to 0.23 logMAR; P = .14). Patients with non-Nocardia keratitis and those having no topical antibiotic use before the SCUT enrollment showed significant improvement in best spectacle-corrected visual acuity at 3 months if corticosteroids were administered earlier rather than later. There may be a benefit with adjunctive topical corticosteroids if application occurs earlier in the course of bacterial corneal ulcers.

Repeatability of Monocular Acuity Testing in Adults with and without Down Syndrome.

PubMed

Ravikumar, Ayeswarya; Benoit, Julia S; Morrison, Kelsie B; Marsack, Jason D; Anderson, Heather A

2018-03-01

Individuals with Down syndrome may experience greater difficulty reliably performing visual acuity (VA) tests because of intellectual disability and limitations in visual quality. This study evaluated the repeatability of acuity (Bailey-Lovie [BL] and HOTV) in subjects with and without Down syndrome. High-contrast VA was measured in both eyes of 30 subjects with Down syndrome (mean, 30 years; range, 18 to 50 years) and 24 control subjects without Down syndrome (mean, 29 years; range, 18 to 50 years). In the Down syndrome group, 23 subjects performed BL, and 7 subjects performed HOTV. All control subjects performed both BL and HOTV, but for HOTV analysis, only seven age-matched control subjects were included. For each eye, subjects performed VA three times on different charts (computer controlled, single-line display) until five total letters were missed on each chart. A repeated-measure ANOVA was used to compare the acuity measures between groups. The average logMAR VA for subjects with Down syndrome was approximately six lines worse than the control subjects (BL: Down syndrome = right eye: 0.51 ± 0.16, left eye: 0.53 ± 0.18; control = right eye: -0.06 ± 0.06, left eye: -0.06 ± 0.08, P < .0001; HOTV: Down syndrome = right eye: 0.47 ± 0.19, left eye: 0.46 ± 0.16; control: right eye = -0.11 ± 0.09, left eye: -0.07 ± 0.07, P < .001). Bailey-Lovie VA repeatability (1.96 * Sw * √2) was 0.13 logMAR (6.5 letters) for Down syndrome and 0.09 logMAR (4.5 letters) for control subjects. HOTV VA repeatability was 0.16 logMAR (eight letters) for both Down syndrome and control subjects. Despite poorer acuity in individuals with Down syndrome, repeatability of VA measurements was comparable to control subjects for both BL and HOTV techniques.

Differences between co-cultures and monocultures in testing the toxicity of particulate matter derived from log wood and pellet combustion

PubMed Central

Happo, Mikko S.; Rönkkö, Teemu J.; Orasche, Jürgen; Jokiniemi, Jorma; Kortelainen, Miika; Tissari, Jarkko; Zimmermann, Ralf; Hirvonen, Maija-Riitta; Jalava, Pasi I.

2018-01-01

Background In vitro studies with monocultures of human alveolar cells shed deeper knowledge on the cellular mechanisms by which particulate matter (PM) causes toxicity, but cannot account for mitigating or aggravating effects of cell-cell interactions on PM toxicity. Methods We assessed inflammation, oxidative stress as well as cytotoxic and genotoxic effects induced by PM from the combustion of different types of wood logs and softwood pellets in three cell culture setups: two monocultures of either human macrophage-like cells or human alveolar epithelial cells, and a co-culture of these two cell lines. The adverse effects of the PM samples were compared between these setups. Results We detected clear differences in the endpoints between the mono- and co-cultures. Inflammatory responses were more diverse in the macrophage monoculture and the co-culture compared to the epithelial cells where only an increase of IL-8 was detected. The production of reactive oxygen species was the highest in epithelial cells and macrophages seemed to have protective effects against oxidative stress from the PM samples. With no metabolically active cells at the highest doses, the cytotoxic effects of the PM samples from the wood log combustion were far more pronounced in the macrophages and the co-culture than in the epithelial cells. All samples caused DNA damage in macrophages, whereas only beech and spruce log combustion samples caused DNA damage in epithelial cells. The organic content of the samples was mainly associated with cytotoxicity and DNA damage, while the metal content of the samples correlated with the induction of inflammatory responses. Conclusions All of the tested PM samples induce adverse effects and the chemical composition of the samples determines which pathway of toxicity is induced. In vitro testing of the toxicity of combustion-derived PM in monocultures of one cell line, however, is inadequate to account for all the possible pathways of toxicity. PMID:29466392

Lyman-break Galaxies at z ˜ 3 in the Subaru Deep Field: Luminosity Function, Clustering, and [O III] Emission

NASA Astrophysics Data System (ADS)

Malkan, Matthew A.; Cohen, Daniel P.; Maruyama, Miyoko; Kashikawa, Nobunari; Ly, Chun; Ishikawa, Shogo; Shimasaku, Kazuhiro; Hayashi, Masao; Motohara, Kentaro

2017-11-01

We combined deep U-band and optical/near-infrared imaging, in order to select Lyman Break Galaxies (LBGs) at z˜ 3 using U - V and V-{R}c colors in the Subaru Deep Field. The resulting sample of 5161 LBGs gives a UV luminosity function (LF) down to {M}{UV}=-18, with a steep faint-end slope of α =-1.78+/- 0.05. We analyze UV-to-NIR energy distributions (SEDs) from optical photometry and photometry on IR median-stacked images. In the stacks, we find a systematic background depression centered on the LBGs. This results from the difficulty of finding faint galaxies in regions with higher-than-average surface densities of foreground galaxies, so we corrected for this deficit. Best-fit stellar population models for the LBG SEDs indicate stellar masses and star formation rates of {{log}}10({M}* /{M}⊙ )≃ 10 and ≃ 50 M ⊙ yr-1 at < {i}{AB}{\\prime }> =24, down to {{log}}10({M}* /{M}⊙ )≃ 8 and ≃ 3 {M}⊙ yr-1 at < {i}{AB}{\\prime }> =27. The faint LBGs show a ˜1 mag excess over the stellar continuum in K-band. We interpret this excess flux as redshifted [O III]λ λ {4959,5007} lines. The observed excesses imply equivalent widths that increase with decreasing mass, reaching {{EW}}0([{{O}} {{iii}}]4959,5007+{{H}}β )≳ 1500 Å (rest-frame). Such strong [O III] emission is seen only in a miniscule fraction of local emission-line galaxies, but is probably universal in the faint galaxies that reionized the universe. Our halo occupation distribution analysis of the angular correlation function gives a halo mass of {{log}}10(< {M}{{h}}> /{h}-1{M}⊙ )=11.29+/- 0.12 for the full sample of LBGs, and {{log}}10(< {M}{{h}}> /{h}-1{M}⊙ )=11.49+/- 0.1 for the brightest half of the sample.

A fractal concentration area method for assigning a color palette for image representation

NASA Astrophysics Data System (ADS)

Cheng, Qiuming; Li, Qingmou

2002-05-01

Displaying the remotely sensed image with a proper color palette is the first task in any kind of image processing and pattern recognition in GIS and image processing environments. The purpose of displaying the image should be not only to provide a visual representation of the variance of the image, although this has been the primary objective of most conventional methods, but also the color palette should reflect real-world features on the ground which must be the primary objective of employing remotely sensed data. Although most conventional methods focus only on the first purpose of image representation, the concentration-area ( C- A plot) fractal method proposed in this paper aims to meet both purposes on the basis of pixel values and pixel value frequency distribution as well as spatial and geometrical properties of image patterns. The C- A method can be used to establish power-law relationships between the area A(⩾ s) with the pixel values greater than s and the pixel value s itself after plotting these values on log-log paper. A number of straight-line segments can be manually or automatically fitted to the points on the log-log paper, each representing a power-law relationship between the area A and the cutoff pixel value for s in a particular range. These straight-line segments can yield a group of cutoff values on the basis of which the image can be classified into discrete classes or zones. These zones usually correspond to the real-world features on the ground. A Windows program has been prepared in ActiveX format for implementing the C- A method and integrating it into other GIS and image processing systems. A case study of Landsat TM band 5 has been used to demonstrate the application of the method and the flexibility of the computer program.

Zagreb Amblyopia Preschool Screening Study: near and distance visual acuity testing increase the diagnostic accuracy of screening for amblyopia.

PubMed

Bušić, Mladen; Bjeloš, Mirjana; Petrovečki, Mladen; Kuzmanović Elabjer, Biljana; Bosnar, Damir; Ramić, Senad; Miletić, Daliborka; Andrijašević, Lidija; Kondža Krstonijević, Edita; Jakovljević, Vid; Bišćan Tvrdi, Ana; Predović, Jurica; Kokot, Antonio; Bišćan, Filip; Kovačević Ljubić, Mirna; Motušić Aras, Ranka

2016-02-01

To present and evaluate a new screening protocol for amblyopia in preschool children. Zagreb Amblyopia Preschool Screening (ZAPS) study protocol performed screening for amblyopia by near and distance visual acuity (VA) testing of 15 648 children aged 48-54 months attending kindergartens in the City of Zagreb County between September 2011 and June 2014 using Lea Symbols in lines test. If VA in either eye was >0.1 logMAR, the child was re-tested, if failed at re-test, the child was referred to comprehensive eye examination at the Eye Clinic. 78.04% of children passed the screening test. Estimated prevalence of amblyopia was 8.08%. Testability, sensitivity, and specificity of the ZAPS study protocol were 99.19%, 100.00%, and 96.68% respectively. The ZAPS study used the most discriminative VA test with optotypes in line as they do not underestimate amblyopia. The estimated prevalence of amblyopia was considerably higher than reported elsewhere. To the best of our knowledge, the ZAPS study protocol reached the highest sensitivity and specificity when evaluating diagnostic accuracy of VA tests for screening. The pass level defined at ≤0.1 logMAR for 4-year-old children, using Lea Symbols in lines missed no amblyopia cases, advocating that both near and distance VA testing should be performed when screening for amblyopia.

Zagreb Amblyopia Preschool Screening Study: near and distance visual acuity testing increase the diagnostic accuracy of screening for amblyopia

PubMed Central

Bušić, Mladen; Bjeloš, Mirjana; Petrovečki, Mladen; Kuzmanović Elabjer, Biljana; Bosnar, Damir; Ramić, Senad; Miletić, Daliborka; Andrijašević, Lidija; Kondža Krstonijević, Edita; Jakovljević, Vid; Bišćan Tvrdi, Ana; Predović, Jurica; Kokot, Antonio; Bišćan, Filip; Kovačević Ljubić, Mirna; Motušić Aras, Ranka

2016-01-01

Aim To present and evaluate a new screening protocol for amblyopia in preschool children. Methods Zagreb Amblyopia Preschool Screening (ZAPS) study protocol performed screening for amblyopia by near and distance visual acuity (VA) testing of 15 648 children aged 48-54 months attending kindergartens in the City of Zagreb County between September 2011 and June 2014 using Lea Symbols in lines test. If VA in either eye was >0.1 logMAR, the child was re-tested, if failed at re-test, the child was referred to comprehensive eye examination at the Eye Clinic. Results 78.04% of children passed the screening test. Estimated prevalence of amblyopia was 8.08%. Testability, sensitivity, and specificity of the ZAPS study protocol were 99.19%, 100.00%, and 96.68% respectively. Conclusion The ZAPS study used the most discriminative VA test with optotypes in lines as they do not underestimate amblyopia. The estimated prevalence of amblyopia was considerably higher than reported elsewhere. To the best of our knowledge, the ZAPS study protocol reached the highest sensitivity and specificity when evaluating diagnostic accuracy of VA tests for screening. The pass level defined at ≤0.1 logMAR for 4-year-old children, using Lea Symbols in lines missed no amblyopia cases, advocating that both near and distance VA testing should be performed when screening for amblyopia. PMID:26935612

Field Utilization and Analysis of AIS 128-channel Imagery Using Microcomputers: Application to Yerington, Nevada Field Area

NASA Technical Reports Server (NTRS)

Lyon, R. J. P.; Lanz, K.

1985-01-01

Geologists in exploration need to be able to determine the mineral composition of a given outcrop, and then proceed to another in order to carry out the process of geologic mapping. Since April 1984 researchers have been developing a portable microcomputer-based imaging system (with a grey-scale of 16 shades of amber), which were demonstrated during the November 1984 GSA field trip in the field at Yerington, NV. A color-version of the same technology was recently demonstrated. The portable computer selected is a COLBY 10-Megabyte, hard disk-equipped repackaged-IBM/XT, which operates on either 110/220 VAC or on 12VDC from the cigarette lighter in a field vehicle. A COMPAQ PLUS or an IBM Portable will also work on modified software. The underlying concept is that the atmospheric transmission and surface albedo/slope terms are multiplicative, relating the spectral irradiance to the spectral color of the surface materials. Thus, the spectral color of a pixel remains after averaged log-albedo and log-irradiance have been estimated. All these steps can be carried out on the COLBY microcomputer, using 80 image lines of the 128-channel, 12-bit imagery. Results are shown for such an 80-line segment, showing the identification of an O-H bearing mineral group (of slightly varying specific characters) on the flight line.

Fundamental Parameters of Nearby Young Stars

NASA Astrophysics Data System (ADS)

McCarthy, Kyle; Wilhelm, R. J.

2013-06-01

We present high resolution (R ~ 60,000) spectroscopic data of F and G members of the nearby, young associations AB Doradus and β Pictoris obtained with the Cross-Dispersed Echelle Spectrograph on the 2.7 meter telescope at the McDonald Observatory. Effective temperatures, log(g), [Fe/H], and microturbulent velocities are first estimated using the TGVIT code, then finely tuned using MOOG. Equivalent width (EW) measurements were made using TAME alongside a self-produced IDL routine to constrain EW accuracy and improve computed fundamental parameters. MOOG is also used to derive the chemical abundance of several elements including Mn which is known to be over abundant in planet hosting stars. Vsin(i) are also computed using a χ2 analysis of our observed data to Atlas9 model atmospheres passed through the SPECTRUM spectral synthesis code on lines which do not depend strongly on surface gravity. Due to the limited number of Fe II lines which govern the surface gravity fit in both TGVIT and MOOG, we implement another χ2 analysis of strongly log(g) dependent lines to ensure the values are correct. Coupling the surface gravities and temperatures derived in this study with the luminosities found in the Tycho-2 catalog, we estimate masses for each star and compare these masses to several evolutionary models to begin the process of constraining pre-main sequence evolutionary models.

Warm Absorbers in X-rays (WAX), a comprehensive high resolution grating spectral study of a sample of Seyfert galaxies

NASA Astrophysics Data System (ADS)

Laha, S.; Guainazzi, M.; Dewangan, G.; Chakravorty, S.; Kembhavi, A.

2014-07-01

We present results from a homogeneous analysis of the broadband 0.3-10 keV CCD resolution as well as of soft X-ray high-resolution grating spectra of a hard X-ray flux-limited sample of 26 Seyfert galaxies observed with XMM-Newton. We could put a strict lower limit on the detection fraction of 50%. We find a gap in the distribution of the ionisation parameter in the range 0.5

An Iwasawa-Taniguchi effect for Compton-thick active galactic nuclei

NASA Astrophysics Data System (ADS)

Boorman, Peter G.; Gandhi, Poshak; Baloković, Mislav; Brightman, Murray; Harrison, Fiona; Ricci, Claudio; Stern, Daniel

2018-07-01

We present the first study of an Iwasawa-Taniguchi/`X-ray Baldwin' effect for Compton-thick active galactic nuclei (AGN). We report a statistically significant anticorrelation between the rest-frame equivalent width (EW) of the narrow core of the neutral Fe Kα fluorescence emission line, ubiquitously observed in the reflection spectra of obscured AGN, and the mid-infrared 12 μ m continuum luminosity (taken as a proxy for the bolometric AGN luminosity). Our sample consists of 72 Compton-thick AGN selected from pointed and deep-field observations covering a redshift range of z ˜ 0.0014-3.7. We employ a Monte Carlo-based fitting method, which returns a Spearman's Rank correlation coefficient of ρ = - 0.28 ± 0.12, significant to 98.7 per cent confidence. The best-fitting found is log(EW_{Fe Kα }) ∝ -0.08± 0.04 log(L_{12 {μ } m}), which is consistent with multiple studies of the X-ray Baldwin effect for unobscured and mildly obscured AGN. This is an unexpected result, as the Fe Kα line is conventionally thought to originate from the same region as the underlying reflection continuum, which together constitute the reflection spectrum. We discuss the implications this could have if confirmed on larger samples, including a systematic underestimation of the line-of-sight X-ray obscuring column density and hence the intrinsic luminosities and growth rates for the most luminous AGN.

Dissecting Stop Transfer versus Conservative Sorting Pathways for Mitochondrial Inner Membrane Proteins in Vivo*

PubMed Central

Park, Kwangjin; Botelho, Salomé Calado; Hong, Joonki; Österberg, Marie; Kim, Hyun

2013-01-01

Mitochondrial inner membrane proteins that carry an N-terminal presequence are sorted by one of two pathways: stop transfer or conservative sorting. However, the sorting pathway is known for only a small number of proteins, in part due to the lack of robust experimental tools with which to study. Here we present an approach that facilitates determination of inner membrane protein sorting pathways in vivo by fusing a mitochondrial inner membrane protein to the C-terminal part of Mgm1p containing the rhomboid cleavage region. We validated the Mgm1 fusion approach using a set of proteins for which the sorting pathway is known, and determined sorting pathways of inner membrane proteins for which the sorting mode was previously uncharacterized. For Sdh4p, a multispanning membrane protein, our results suggest that both conservative sorting and stop transfer mechanisms are required for insertion. Furthermore, the sorting process of Mgm1 fusion proteins was analyzed under different growth conditions and yeast mutant strains that were defective in the import motor or the m-AAA protease function. Our results show that the sorting of mitochondrial proteins carrying moderately hydrophobic transmembrane segments is sensitive to cellular conditions, implying that mitochondrial import and membrane sorting in the physiological environment may be dynamically tuned. PMID:23184936

Seminal plasma affects sperm sex sorting in boars.

PubMed

Alkmin, Diego V; Parrilla, Inmaculada; Tarantini, Tatiana; Del Olmo, David; Vazquez, Juan M; Martinez, Emilio A; Roca, Jordi

2016-04-01

Two experiments were conducted in boar semen samples to evaluate how both holding time (24h) and the presence of seminal plasma (SP) before sorting affect sperm sortability and the ability of sex-sorted spermatozoa to tolerate liquid storage. Whole ejaculate samples were divided into three aliquots immediately after collection: one was diluted (1:1, v/v) in Beltsville thawing solution (BTS; 50% SP); the SP of the other two aliquots was removed and the sperm pellets were diluted with BTS + 10% of their own SP (10% SP) or BTS alone (0% SP). The three aliquots of each ejaculate were divided into two portions, one that was processed immediately for sorting and a second that was sorted after 24h storage at 15-17°C. In the first experiment, the ability to exhibit well-defined X- and Y-chromosome-bearing sperm peaks (split) in the cytometry histogram and the subsequent sorting efficiency were assessed (20 ejaculates). In contrast with holding time, the SP proportion influenced the parameters examined, as evidenced by the higher number of ejaculates exhibiting split and better sorting efficiency (P<0.05) in semen samples with 0-10% SP compared with those with 50% SP. In a second experiment, the quality (viability, total and progressive motility) and functionality (plasma membrane fluidity and intracellular generation of reactive oxygen species) of sex-sorted spermatozoa were evaluated after 0, 72 and 120h storage at 15-17°C (10 ejaculates). Holding time and SP proportion did not influence the quality or functionality of stored sex-sorted spermatozoa. In conclusion, a holding time as long as 24h before sorting did not negatively affect sex sorting efficiency or the ability of sorted boar spermatozoa to tolerate long-term liquid storage. A high proportion of SP (50%) in the semen samples before sorting reduced the number of ejaculates to be sorted and negatively influenced the sorting efficiency, but did not affect the ability of sex-sorted spermatozoa to tolerate liquid storage.

Method for rapid isolation of sensitive mutants

DOEpatents

Freyer, James P.

1997-01-01

Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned.

Method for rapid isolation of sensitive mutants

DOEpatents

Freyer, J.P.

1997-07-29

Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned. 15 figs.

Real-World Vision in Age-Related Macular Degeneration Patients Treated with Single Anti-VEGF Drug Type for 1 Year in the IRIS Registry.

PubMed

Rao, Prethy; Lum, Flora; Wood, Kevin; Salman, Craig; Burugapalli, Bhavya; Hall, Rebecca; Singh, Sukhminder; Parke, David W; Williams, George A

2018-04-01

The purpose of this study is to compare real-world visual acuity (VA) in patients with neovascular age-related macular degeneration (nAMD) treated with a single anti-vascular endothelial growth factor (VEGF) drug monotherapy for 1 year from the American Academy of Ophthalmology (AAO) Intelligent Research in Sight (IRIS) Registry. Retrospective, nonrandomized, comparative study. IRIS Registry patients with nAMD who received bevacizumab, ranibizumab, or aflibercept only for 1 year between 2013-2016. Participants were divided into 3 groups based on monotherapy type. Multivariate analysis of covariance models (ANCOVA) was constructed in a stepwise fashion. The logarithm of the minimum angle of resolution (logMAR) VA at 1 year and mean change in logMAR VA between baseline and 1 year were compared between drug types. Of 13 859 patients, 6723 received bevacizumab, 2749 received ranibizumab, and 4387 received aflibercept only for 1 year. A total of 84 828 injections were performed. The mean number of injections (standard deviation) at 1 year was higher in the ranibizumab (6.4 [±2.4]) and aflibercept groups (6.2 [±2.4]) compared to bevacizumab group (5.9 [±2.4]; P < 0.0001). In the age-adjusted model, both ranibizumab and aflibercept achieved better logMAR VA at 1 year compared with bevacizumab (0.50 [±0.49], 0.49 [±0.44], 0.55 [±0.57]; P < 0.0001). However, this difference was not significant after multivariate adjustment (age, baseline VA, diabetes, posterior vitreous detachment, number of injections, race, insurance). There was no statistical difference in the age-adjusted or multivariate-adjusted mean logMAR VA change (standard deviation) at 1 year among treatment groups (-0.048 [0.44] bevacizumab, -0.053 [0.46] ranibizumab, -0.040 [0.39] aflibercept; P = 0.46). A higher percentage of patients achieved a ≥3-line VA improvement at 1 year in the bevacizumab group (22.7%) compared with ranibizumab (20.1%; P = 0.0093) and aflibercept (17.8%; P < 0.0001). However, after multivariate adjustment, aflibercept exhibited a greater log odds of a ≥3-line VA loss compared with bevacizumab only (1.25 log odds ratio; P < 0.0016). This study suggests that all 3 drugs improve VA similarly over 1 year of monotherapy. Copyright © 2017 American Academy of Ophthalmology. Published by Elsevier Inc. All rights reserved.

Difficulties in everyday life: young persons with attention-deficit/hyperactivity disorder and autism spectrum disorders perspectives. A chat-log analysis.

PubMed

Ahlström, Britt H; Wentz, Elisabet

2014-01-01

This study focuses on the everyday life of young persons with attention-deficit/hyperactivity disorder (ADHD) and autism spectrum disorder (ASD). There are follow-up studies describing ADHD, and ASD in adults, and residual impairments that affect life. Few qualitative studies have been conducted on the subject of their experiences of everyday life, and even fewer are from young persons' perspectives. This study's aim was to describe how young persons with ADHD and ASD function and how they manage their everyday life based on analyses of Internet-based chat logs. Twelve young persons (7 males and 5 females aged 15-26) diagnosed with ADHD and ASD were included consecutively and offered 8 weeks of Internet-based Support and Coaching (IBSC). Data were collected from 12 chat logs (445 pages of text) produced interactively by the participants and the coaches. Qualitative content analysis was applied. The text was coded and sorted into subthemes and further interpreted into themes. The findings revealed two themes: "fighting against an everyday life lived in vulnerability" with the following subthemes: "difficult things," "stress and rest," and "when feelings and thoughts are a concern"; and the theme "struggling to find a life of one's own" with the following subthemes: "decide and carry out," "making life choices," and "taking care of oneself." Dealing with the problematic situations that everyday encompasses requires personal strength and a desire to find adequate solutions, as well as to discover a role in society. This study, into the provision of support and coaching over the Internet, led to more in-depth knowledge about these young persons' everyday lives and revealed their ability to use IBSC to express the complexity of everyday life for young persons with ADHD and ASD. The implications of the findings are that using online coaching makes available new opportunities for healthcare professionals to acknowledge these young persons' problems.

High-resolution, far-ultraviolet study of Beta Draconis (G2 Ib-II) - Transition region structure and energy balance

NASA Technical Reports Server (NTRS)

Brown, A.; Jordan, C.; Stencel, R. E.; Linsky, J. L.; Ayres, T. R.

1984-01-01

High-resolution far ultraviolet spectra of the star Beta Draconis have been obtained with the IUE satellite. The observations and emission line data from the spectra are presented, the interpretation of the emission line widths and shifts is discussed, and the implications are given in terms of atmospheric properties. The emission measure distribution is derived, and density diagnostics involving both line ratios and line opacity arguments is investigated. The methods for calculating spherically symmetric models of the atmospheric structure are outlined, and several such models are presented. The extension of these models to log T(e) greater than 5.3 using the observed X-ray flux is addressed, the energy balance of an 'optimum' model is investigated, and possible models of energy transport and deposition are discussed.

Matrix form for the instrument line shape of Fourier-transform spectrometers yielding a fast integration algorithm to theoretical spectra.

PubMed

Desbiens, Raphaël; Tremblay, Pierre; Genest, Jérôme; Bouchard, Jean-Pierre

2006-01-20

The instrument line shape (ILS) of a Fourier-transform spectrometer is expressed in a matrix form. For all line shape effects that scale with wavenumber, the ILS matrix is shown to be transposed in the spectral and interferogram domains. The novel representation of the ILS matrix in the interferogram domain yields an insightful physical interpretation of the underlying process producing self-apodization. Working in the interferogram domain circumvents the problem of taking into account the effects of finite optical path difference and permits a proper discretization of the equations. A fast algorithm in O(N log2 N), based on the fractional Fourier transform, is introduced that permits the application of a constant resolving power line shape to theoretical spectra or forward models. The ILS integration formalism is validated with experimental data.

Physical conditions in the neutral interstellar medium at z = 2.43 toward Q 2348-011

NASA Astrophysics Data System (ADS)

Noterdaeme, P.; Petitjean, P.; Srianand, R.; Ledoux, C.; Le Petit, F.

2007-07-01

Aims:We aim at deriving the physical conditions in the neutral gas associated with damped Lyman-α systems using observation and analysis of H2 and C i absorptions. Methods: We obtained a high-resolution VLT-UVES spectrum of the quasar Q 2348-011 over a wavelength range that covers most of the prominent metal and molecular absorption lines from the log N(H i) = 20.50 ± 0.10 damped Lyman-α system at z_abs=2.4263. We detected H2 in this system and measured column densities of H2, C i, C i^*, C i**, Si ii, P ii, S ii, Fe ii, and Ni ii. From the column density ratios and, in particular, the relative populations of H2 rotational and C i fine-structure levels, we derived the physical conditions in the gas (relative abundances, dust-depletion, particle density, kinetic temperature, and ionising flux) and discuss physical conditions in the neutral phase. Results: Molecular hydrogen was detected in seven components in the first four rotational levels (J = 0-3) of the vibrational ground state. Absorption lines of H2 J=4 (resp. J = 5) rotational levels are detected in six (resp. two) of these components. This leads to a total molecular fraction of log f ≃ -1.69+0.37-0.58. Fourteen components are needed to reproduce the metal-line profiles. The overall metallicity is found to be -0.80, -0.62, -1.17 ± 0.10 for, respectively, [Si/H], [S/H] and [Fe/H]. We confirm the earlier findings that there is a correlation between log N(Fe ii)/N(S ii) and log N(Si ii)/N(S ii) from different components indicative of a dust-depletion pattern. Surprisingly, however, the depletion of metals onto dust in the H2 components is not large in this system: [Fe/S] = -0.8 to -0.1. The gas in H2-bearing components is found to be cold but still hotter than similar gas in our Galaxy (T > 130 K, instead of typically 80 K) and dense (n ˜ 100-200 cm-3). There is an anti-correlation (R=-0.97) between the logarithm of the photo-absorption rate, log β_0, and log N(H2)/N(C i) derived for each H2 component. We show that this is mostly due to shielding effects and imply that the photo-absorption rate β0 is a good indicator of the physical conditions in the gas. We find that the gas is immersed in an intense UV field, about one order of magnitude higher than in the solar vicinity. These results suggest that the gas in H2-bearing DLAs is clumpy, and star-formation occurs in the associated object. Based on observations carried out at the European Southern Observatory (ESO) under prog. ID No. 072.A-0346 with the UVES spectrograph installed at the Very Large Telescope (VLT) Unit 2, Kueyen, on Cerro Paranal, Chile.

Reservoir assessment of the Nubian sandstone reservoir in South Central Gulf of Suez, Egypt

NASA Astrophysics Data System (ADS)

El-Gendy, Nader; Barakat, Moataz; Abdallah, Hamed

2017-05-01

The Gulf of Suez is considered as one of the most important petroleum provinces in Egypt and contains the Saqqara and Edfu oil fields located in the South Central portion of the Gulf of Suez. The Nubian sandstone reservoir in the Gulf of Suez basin is well known for its great capability to store and produce large volumes of hydrocarbons. The Nubian sandstone overlies basement rocks throughout most of the Gulf of Suez region. It consists of a sequence of sandstones and shales of Paleozoic to Cretaceous age. The Nubian sandstone intersected in most wells has excellent reservoir characteristics. Its porosity is controlled by sedimentation style and diagenesis. The cementation materials are mainly kaolinite and quartz overgrowths. The permeability of the Nubian sandstone is mainly controlled by grain size, sorting, porosity and clay content especially kaolinite and decreases with increase of kaolinite. The permeability of the Nubian Sandstone is evaluated using the Nuclear Magnetic Resonance (NMR technology) and formation pressure data in addition to the conventional logs and the results were calibrated using core data. In this work, the Nubian sandstone was investigated and evaluated using complete suites of conventional and advanced logging techniques to understand its reservoir characteristics which have impact on economics of oil recovery. The Nubian reservoir has a complicated wettability nature which affects the petrophysical evaluation and reservoir productivity. So, understanding the reservoir wettability is very important for managing well performance, productivity and oil recovery.

Stochastic Model of Vesicular Sorting in Cellular Organelles

NASA Astrophysics Data System (ADS)

Vagne, Quentin; Sens, Pierre

2018-02-01

The proper sorting of membrane components by regulated exchange between cellular organelles is crucial to intracellular organization. This process relies on the budding and fusion of transport vesicles, and should be strongly influenced by stochastic fluctuations, considering the relatively small size of many organelles. We identify the perfect sorting of two membrane components initially mixed in a single compartment as a first passage process, and we show that the mean sorting time exhibits two distinct regimes as a function of the ratio of vesicle fusion to budding rates. Low ratio values lead to fast sorting but result in a broad size distribution of sorted compartments dominated by small entities. High ratio values result in two well-defined sorted compartments but sorting is exponentially slow. Our results suggest an optimal balance between vesicle budding and fusion for the rapid and efficient sorting of membrane components and highlight the importance of stochastic effects for the steady-state organization of intracellular compartments.

Identification and genetic analysis of cancer cells with PCR-activated cell sorting

PubMed Central

Eastburn, Dennis J.; Sciambi, Adam; Abate, Adam R.

2014-01-01

Cell sorting is a central tool in life science research for analyzing cellular heterogeneity or enriching rare cells out of large populations. Although methods like FACS and FISH-FC can characterize and isolate cells from heterogeneous populations, they are limited by their reliance on antibodies, or the requirement to chemically fix cells. We introduce a new cell sorting technology that robustly sorts based on sequence-specific analysis of cellular nucleic acids. Our approach, PCR-activated cell sorting (PACS), uses TaqMan PCR to detect nucleic acids within single cells and trigger their sorting. With this method, we identified and sorted prostate cancer cells from a heterogeneous population by performing >132 000 simultaneous single-cell TaqMan RT-PCR reactions targeting vimentin mRNA. Following vimentin-positive droplet sorting and downstream analysis of recovered nucleic acids, we found that cancer-specific genomes and transcripts were significantly enriched. Additionally, we demonstrate that PACS can be used to sort and enrich cells via TaqMan PCR reactions targeting single-copy genomic DNA. PACS provides a general new technical capability that expands the application space of cell sorting by enabling sorting based on cellular information not amenable to existing approaches. PMID:25030902

Sedimentation and tectonics of the Sylhet trough, Bangladesh

USGS Publications Warehouse

Johnson, S.Y.; Nur Alam, A.M.

1991-01-01

The Sylhet trough, a sub-basin of the Bengal Basin in northeastern Bangladesh, contains a thick fill (12 to 16 km) of late Mesozoic and Cenozoic strata that record its tectonic evolution. Stratigraphic, sedimentologic, and petrographic data collected from outcrops, cores, well logs, and seismic lines are used to reconstruct the history of this trough. -from Authors

40 CFR 63.464 - Alternative standards.

Code of Federal Regulations, 2011 CFR

2011-07-01

... (a)(2) of this section. (1) If the cleaning machine has a solvent/air interface, as defined in § 63... cleaning machines 153 New in-line solvent cleaning machines 99 (2) If the cleaning machine is a batch vapor... requirements specified in paragraphs (a)(2)(i) and (a)(2)(ii) of this section. (i) Maintain a log of solvent...

40 CFR 63.464 - Alternative standards.

Code of Federal Regulations, 2010 CFR

2010-07-01

... (a)(2) of this section. (1) If the cleaning machine has a solvent/air interface, as defined in § 63... cleaning machines 153 New in-line solvent cleaning machines 99 (2) If the cleaning machine is a batch vapor... requirements specified in paragraphs (a)(2)(i) and (a)(2)(ii) of this section. (i) Maintain a log of solvent...

A Unified Framework for Bounded and Unbounded Numerical Estimation

ERIC Educational Resources Information Center

Kim, Dan; Opfer, John E.

2017-01-01

Representations of numerical value have been assessed by using bounded (e.g., 0-1,000) and unbounded (e.g., 0-?) number-line tasks, with considerable debate regarding whether 1 or both tasks elicit unique cognitive strategies (e.g., addition or subtraction) and require unique cognitive models. To test this, we examined how well a mixed log-linear…

Transaction aware tape-infrastructure monitoring

NASA Astrophysics Data System (ADS)

Nikolaidis, Fotios; Kruse, Daniele Francesco

2014-06-01

Administrating a large scale, multi protocol, hierarchical tape infrastructure like the CERN Advanced STORage manager (CASTOR)[2], which stores now 100 PB (with an increasing step of 25 PB per year), requires an adequate monitoring system for quick spotting of malfunctions, easier debugging and on demand report generation. The main challenges for such system are: to cope with CASTOR's log format diversity and its information scattered among several log files, the need for long term information archival, the strict reliability requirements and the group based GUI visualization. For this purpose, we have designed, developed and deployed a centralized system consisting of four independent layers: the Log Transfer layer for collecting log lines from all tape servers to a single aggregation server, the Data Mining layer for combining log data into transaction context, the Storage layer for archiving the resulting transactions and finally the Web UI layer for accessing the information. Having flexibility, extensibility and maintainability in mind, each layer is designed to work as a message broker for the next layer, providing a clean and generic interface while ensuring consistency, redundancy and ultimately fault tolerance. This system unifies information previously dispersed over several monitoring tools into a single user interface, using Splunk, which also allows us to provide information visualization based on access control lists (ACL). Since its deployment, it has been successfully used by CASTOR tape operators for quick overview of transactions, performance evaluation, malfunction detection and from managers for report generation.

SU-D-18C-01: A Novel 4D-MRI Technology Based On K-Space Retrospective Sorting

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Y; Yin, F; Cai, J

2014-06-01

Purpose: Current 4D-MRI techniques lack sufficient temporal/spatial resolution and consistent tumor contrast. To overcome these limitations, this study presents the development and initial evaluation of an entirely new framework of 4D-MRI based on k-space retrospective sorting. Methods: An important challenge of the proposed technique is to determine the number of repeated scans(NR) required to obtain sufficient k-space data for 4D-MRI. To do that, simulations using 29 cancer patients' respiratory profiles were performed to derive the relationship between data acquisition completeness(Cp) and NR, also relationship between NR(Cp=95%) and the following factors: total slice(NS), respiratory phase bin length(Lb), frame rate(fr), resolution(R) andmore » image acquisition starting-phase(P0). To evaluate our technique, a computer simulation study on a 4D digital human phantom (XCAT) were conducted with regular breathing (fr=0.5Hz; R=256×256). A 2D echo planer imaging(EPI) MRI sequence were assumed to acquire raw k-space data, with respiratory signal and acquisition time for each k-space data line recorded simultaneously. K-space data was re-sorted based on respiratory phases. To evaluate 4D-MRI image quality, tumor trajectories were measured and compared with the input signal. Mean relative amplitude difference(D) and cross-correlation coefficient(CC) are calculated. Finally, phase-sharing sliding window technique was applied to investigate the feasibility of generating ultra-fast 4D-MRI. Result: Cp increased with NR(Cp=100*[1-exp(-0.19*NR)], when NS=30, Lb=100%/6). NR(Cp=95%) was inversely-proportional to Lb (r=0.97), but independent of other factors. 4D-MRI on XCAT demonstrated highly accurate motion information (D=0.67%, CC=0.996) with much less artifacts than those on image-based sorting 4D-MRI. Ultra-fast 4D-MRI with an apparent temporal resolution of 10 frames/second was reconstructed using the phase-sharing sliding window technique. Conclusions: A novel 4D-MRI technology based on k-space sorting has been successfully developed and evaluated on the digital phantom. Framework established can be applied to a variety of MR sequences, showing great promises to develop the optimal 4D-MRI technique for many radiation therapy applications. NIH (1R21CA165384-01A1)« less

Evaluation of motility, membrane status and DNA integrity of frozen-thawed bottlenose dolphin (Tursiops truncatus) spermatozoa after sex-sorting and recryopreservation.

PubMed

Montano, G A; Kraemer, D C; Love, C C; Robeck, T R; O'Brien, J K

2012-06-01

Artificial insemination (AI) with sex-sorted frozen-thawed spermatozoa has led to enhanced management of ex situ bottlenose dolphin populations. Extended distance of animals from the sorting facility can be overcome by the use of frozen-thawed, sorted and recryopreserved spermatozoa. Although one bottlenose dolphin calf had been born using sexed frozen-thawed spermatozoa derived from frozen semen, a critical evaluation of in vitro sperm quality is needed to justify the routine use of such samples in AI programs. Sperm motility parameters and plasma membrane integrity were influenced by stage of the sex-sorting process, sperm type (non-sorted and sorted) and freezing method (straw and directional) (P<0.05). After recryopreservation, sorted spermatozoa frozen with the directional freezing method maintained higher (P<0.05) motility parameters over a 24-h incubation period compared to spermatozoa frozen using straws. Quality of sperm DNA of non-sorted spermatozoa, as assessed by the sperm chromatin structure assay (SCSA), was high and remained unchanged throughout freeze-thawing and incubation processes. Though a possible interaction between Hoechst 33342 and the SCSA-derived acridine orange was observed in stained and sorted samples, the proportion of sex-sorted, recryopreserved spermatozoa exhibiting denatured DNA was low (6.6±4.1%) at 6 h after the second thawing step and remained unchanged (P>0.05) at 24 h. The viability of sorted spermatozoa was higher (P<0.05) than that of non-sorted spermatozoa across all time points after recryopreservation. Collective results indicate that bottlenose dolphin spermatozoa undergoing cryopreservation, sorting and recryopreservation are of adequate quality for use in AI.

VizieR Online Data Catalog: GB6 catalog of radio sources (Gregory+ 1996)

NASA Astrophysics Data System (ADS)

Gregory, P. C.; Scott, W. K.; Douglas, K.; Condon, J. J.

1997-01-01

The final set of sky maps from the Green Bank 4.85 GHz survey (Condon J.J., Broderick J.J., Seielstad G.A., Douglas K., & Gregory P.C. in 1994AJ....107.1829C) was used to construct the GB6 Catalog of sources stronger than S ~ 18 mJy in the declination range 0deg < Dec. < +75deg (Gregory P.C., Scott W.K., Douglas K., & Condon J.J. in 1996ApJS..103..427G). There are two machine-readable versions of the GB6 catalog, with coordinates precessed to B1950 (file b1950.dat) and J2000 (file j2000.dat). Each catalog file contains one line per source (75,162 lines each), and the sources are sorted by increasing B1950 or J2000 right ascension. (3 data files).

Microfluidic cell sorting: a review of the advances in the separation of cells from debulking to rare cell isolation.

PubMed

Shields, C Wyatt; Reyes, Catherine D; López, Gabriel P

2015-03-07

Accurate and high throughput cell sorting is a critical enabling technology in molecular and cellular biology, biotechnology, and medicine. While conventional methods can provide high efficiency sorting in short timescales, advances in microfluidics have enabled the realization of miniaturized devices offering similar capabilities that exploit a variety of physical principles. We classify these technologies as either active or passive. Active systems generally use external fields (e.g., acoustic, electric, magnetic, and optical) to impose forces to displace cells for sorting, whereas passive systems use inertial forces, filters, and adhesion mechanisms to purify cell populations. Cell sorting on microchips provides numerous advantages over conventional methods by reducing the size of necessary equipment, eliminating potentially biohazardous aerosols, and simplifying the complex protocols commonly associated with cell sorting. Additionally, microchip devices are well suited for parallelization, enabling complete lab-on-a-chip devices for cellular isolation, analysis, and experimental processing. In this review, we examine the breadth of microfluidic cell sorting technologies, while focusing on those that offer the greatest potential for translation into clinical and industrial practice and that offer multiple, useful functions. We organize these sorting technologies by the type of cell preparation required (i.e., fluorescent label-based sorting, bead-based sorting, and label-free sorting) as well as by the physical principles underlying each sorting mechanism.

Microfluidic Cell Sorting: A Review of the Advances in the Separation of Cells from Debulking to Rare Cell Isolation

PubMed Central

Shields, C. Wyatt; Reyes, Catherine D.; López, Gabriel P.

2015-01-01

Accurate and high throughput cell sorting is a critical enabling technology in molecular and cellular biology, biotechnology, and medicine. While conventional methods can provide high efficiency sorting in short timescales, advances in microfluidics have enabled the realization of miniaturized devices offering similar capabilities that exploit a variety of physical principles. We classify these technologies as either active or passive. Active systems generally use external fields (e.g., acoustic, electric, magnetic, and optical) to impose forces to displace cells for sorting, whereas passive systems use inertial forces, filters, and adhesion mechanisms to purify cell populations. Cell sorting on microchips provides numerous advantages over conventional methods by reducing the size of necessary equipment, eliminating potentially biohazardous aerosols, and simplifying the complex protocols commonly associated with cell sorting. Additionally, microchip devices are well suited for parallelization, enabling complete lab-on-a-chip devices for cellular isolation, analysis, and experimental processing. In this review, we examine the breadth of microfluidic cell sorting technologies, while focusing on those that offer the greatest potential for translation into clinical and industrial practice and that offer multiple, useful functions. We organize these sorting technologies by the type of cell preparation required (i.e., fluorescent label-based sorting, bead-based sorting, and label-free sorting) as well as by the physical principles underlying each sorting mechanism. PMID:25598308

Using Remote Sensed Imagery to Determine the Impacts from Salvage Logging after the 2015 Tower Fire, Washington (USA)

NASA Astrophysics Data System (ADS)

Broers, Anna; Robichaud, Peter; Lewis, Sarah

2017-04-01

Wildfires are part of the natural process in most forested landscapes and during subsequent precipitation, the runoff and consequently erosion of the soil increases. Several factors contribute to the increased runoff: loss of runoff storage in the forest floor, the water repellent soil layer and reduced interception by the canopy. Due to climate change, the number of wildfires and their severity is likely to increase, which will lead to increased erosion; this has been investigated by others. Often, land management protocol is to remove the standing dead trees before they decay. In the past years salvage logging has received more attention in research, yet results have been mixed on its effects on increased erosion. The goal of the current research is to determine the change in surface conditions due to salvage logging operations by comparing the pre- and post-fire and post-salvage surface conditions. To determine this change, high resolution WorldView remote sensing imagery was used after 9000-ha 2015 Tower Fire which was located on the border of Idaho and Washington (USA). Ground validation measurements were taken using the forest soil disturbance protocol as well as GPS coordinates and measurements of highly disturbed areas such as skid trails, skyline drag lines and other machinery impacts. Some correlations were found between disturbance classes, bare soil, exposed wheel tracks (rutting) and soil compaction. High resolution WorldView remote sensing images detected changes in the pre- and post-fire environmental conditions and the change due to salvage logging operations. Classifying disturbances using remote sensing imagery is complicated by natural revegetation processes and by the timing of salvage logging operations. Initial results suggest that high resolution imagery can be used to determine onsite impacts of salvage logging operations.

Scaling laws and edge effects for polymer surface discharges

NASA Technical Reports Server (NTRS)

Balmain, K. G.

1979-01-01

Specimens of Mylar sheet were exposed to a 20 kV electron beam. The resulting surface discharge arcs were photographed and the discharge current into a metal backing plate measured as a function of time. The area of the Mylar sheet was defined by a round aperture in a close-fitting metal mask, and the current pulse characteristics were plotted against area on log-log paper. The plots appear as straight lines (due to power-law behavior) with slopes of 0.50 for the peak current, 1.00 for the charge released, 1.49 for the energy and 0.55 for the pulse duration. Evidence is presented for the occurrence of banded charge distributions near grounded edges, on both Teflon and Mylar.

A Binary Array Asynchronous Sorting Algorithm with Using Petri Nets

NASA Astrophysics Data System (ADS)

Voevoda, A. A.; Romannikov, D. O.

2017-01-01

Nowadays the tasks of computations speed-up and/or their optimization are actual. Among the approaches on how to solve these tasks, a method applying approaches of parallelization and asynchronization to a sorting algorithm is considered in the paper. The sorting methods are ones of elementary methods and they are used in a huge amount of different applications. In the paper, we offer a method of an array sorting that based on a division into a set of independent adjacent pairs of numbers and their parallel and asynchronous comparison. And this one distinguishes the offered method from the traditional sorting algorithms (like quick sorting, merge sorting, insertion sorting and others). The algorithm is implemented with the use of Petri nets, like the most suitable tool for an asynchronous systems description.

Stellar and Circumstellar Properties of the Pre-Main-Sequence Binary GV Tau From Infrared Spectroscopy

DTIC Science & Technology

2008-09-20

surface gravity . With ourL-band spectra in order 25 (3.0450Y3.0865m;Fig. 1e), we detect strong HCN absorption (10% deep) and weaker C2H2 absorption in...Doppmann et al. 2005). The absorption lines of Na i and Mg i are particularly gravity and temperature sensitive, but in the opposite sense from each...other. For example, at cool effective temperatures (3200Y4500 K) and subdwarf surface gravities (3:5 log g 4:5) Na andMg lines both grow stronger as

Time-resolved characterization of primary emissions from residential wood combustion appliances.

PubMed

Heringa, M F; DeCarlo, P F; Chirico, R; Lauber, A; Doberer, A; Good, J; Nussbaumer, T; Keller, A; Burtscher, H; Richard, A; Miljevic, B; Prevot, A S H; Baltensperger, U

2012-10-16

Primary emissions from a log wood burner and a pellet boiler were characterized by online measurements of the organic aerosol (OA) using a high-resolution time-of-flight aerosol mass spectrometer (HR-TOF-AMS) and of black carbon (BC). The OA and BC concentrations measured during the burning cycle of the log wood burner, batch wise fueled with wood logs, were highly variable and generally dominated by BC. The emissions of the pellet burner had, besides inorganic material, a high fraction of OA and a minor contribution of BC. However, during artificially induced poor burning BC was the dominating species with ∼80% of the measured mass. The elemental O:C ratio of the OA was generally found in the range of 0.2-0.5 during the startup phase or after reloading of the log wood burner. During the burnout or smoldering phase, O:C ratios increased up to 1.6-1.7, which is similar to the ratios found for the pellet boiler during stable burning conditions and higher than the O:C ratios observed for highly aged ambient OA. The organic emissions of both burners have a very similar H:C ratio at a given O:C ratio and therefore fall on the same line in the Van Krevelen diagram.

EC03089-6421: a new, very rapidly pulsating sdO star

NASA Astrophysics Data System (ADS)

Kilkenny, D.; Worters, H. L.; Østensen, R. H.

2017-06-01

EC 03089-6421, classified sdO in the Edinburgh-Cape (EC) blue object survey, is shown to have unusually rapid pulsations with a dominant frequency near 32 mHz (amplitude ˜0.02 mag; period 31.1 s) - which appears to be strongly variable in amplitude on time-scales of hours and days - and a generally weaker frequency near 29 mHz (amplitude ˜0.004 mag; period 34.2 s), which is also variable in amplitude. This star varies at twice the frequency of any known hot subdwarf pulsator. Although the low-resolution EC spectrogram appears very similar to those of DAO stars, our analysis derives Teff = 40 200 ± 1600 K; log g = 6.25 ± 0.23 and log N(He)/N(H) = -1.63 ± 0.55; more recent spectrograms give Teff = 37 400 ± 1000 K; log g = 5.70 ± 0.13 and log N(He)/N(H) = -2.02 ± 0.17, both of which indicate that the gravity is too low for a white dwarf star, although the low temperature derived from the Balmer lines is at odds with the absence of neutral Helium and the strength of He II 4686. It is possible that EC 03089-6421 is a field analogue of the ω Cen sdO variables.

A Quality Sorting of Fruit Using a New Automatic Image Processing Method

NASA Astrophysics Data System (ADS)

Amenomori, Michihiro; Yokomizu, Nobuyuki

This paper presents an innovative approach for quality sorting of objects such as apples sorting in an agricultural factory, using an image processing algorithm. The objective of our approach are; firstly to sort the objects by their colors precisely; secondly to detect any irregularity of the colors surrounding the apples efficiently. An experiment has been conducted and the results have been obtained and compared with that has been preformed by human sorting process and by color sensor sorting devices. The results demonstrate that our approach is capable to sort the objects rapidly and the percentage of classification valid rate was 100 %.

Locomotor activity, core body temperature, and circadian rhythms in mice selected for high or low heat loss.

PubMed

Mousel, M R; Stroup, W W; Nielsen, M K

2001-04-01

Daily locomotor activity, core body temperature, and their circadian rhythms were measured in lines of mice selected for high (MH) or low (ML) heat loss and unselected controls (MC). Lines were created by selecting for 16 generations in each of three replicates. Collection of locomotor activity and core temperature data spanned Generations 20 and 21 for a total of 352 mice. Physical activity and core body temperature data were accumulated using implanted transmitters and continuous automated collection. Measurement for each animal was for 3 d. Activity was recorded for each half hour and then averaged for the day; temperature was averaged daily; circadian rhythm was expressed in 12-h (light vs dark) or 6-h periods as well as by fitting cyclic models. Activity means were transformed to log base 2 to lessen heterogeneity of variance within lines. Heat loss for a 15-h period beginning at 1630 and feed intake for 7 d were measured on 74 additional mice in order to estimate the relationship between locomotor activity and heat loss or feed intake. Selection lines were different (P < 0.01) for both locomotor activity and core body temperature. Differences were due to selection (MH-ML, P < 0.01), and there was no evidence of asymmetry of response (P > 0.38). Retransformed from log base 2 to the scale of measurement, mean activity counts were 308, 210, and 150 for MH, MC, and ML, respectively. Mean core temperatures were 37.2, 36.9, and 36.7 degrees C for MH, MC, and ML (P < 0.01), respectively. Females had greater physical activity (P < 0.01) and body temperature (P < 0.01) than males. There was no evidence of a sex x selection criterion interaction for either activity or temperature (P > 0.20). Overall phenotypic correlation between body temperature and log base 2 activity was 0.43 (P < 0.01). Periods during the day were different for both 12- and 6-h analyses (P < 0.01), but there were no period x selection criterion interactions (P > 0.1) for physical activity or body temperature. More sensitive cyclic models revealed significant (P < 0.01) 24-, 12-, 8-, and 6-h cycles that differed (P < 0.01) among lines. Estimated differences between MH and ML mice in feed intake and heat loss due to locomotor activity were 36 and 11.5%, respectively. Variation in activity thus contributed to variation in feed intake.

On the origins of logarithmic number-to-position mapping.

PubMed

Dotan, Dror; Dehaene, Stanislas

2016-11-01

The number-to-position task, in which children and adults are asked to place numbers on a spatial number line, has become a classic measure of number comprehension. We present a detailed experimental and theoretical dissection of the processing stages that underlie this task. We used a continuous finger-tracking technique, which provides detailed information about the time course of processing stages. When adults map the position of 2-digit numbers onto a line, their final mapping is essentially linear, but intermediate finger location show a transient logarithmic mapping. We identify the origins of this log effect: Small numbers are processed faster than large numbers, so the finger deviates toward the target position earlier for small numbers than for large numbers. When the trajectories are aligned on the finger deviation onset, the log effect disappears. The small-number advantage and the log effect are enhanced in dual-task setting and are further enhanced when the delay between the 2 tasks is shortened, suggesting that these effects originate from a central stage of quantification and decision making. We also report cases of logarithmic mapping-by children and by a brain-injured individual-which cannot be explained by faster responding to small numbers. We show that these findings are captured by an ideal-observer model of the number-to-position mapping task, comprising 3 distinct stages: a quantification stage, whose duration is influenced by both exact and approximate representations of numerical quantity; a Bayesian accumulation-of-evidence stage, leading to a decision about the target location; and a pointing stage. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Targeting of GLUT1-GLUT5 chimeric proteins in the polarized cell line Caco-2.

PubMed

Inukai, K; Takata, K; Asano, T; Katagiri, H; Ishihara, H; Nakazaki, M; Fukushima, Y; Yazaki, Y; Kikuchi, M; Oka, Y

1997-04-01

Caco-2, a human differentiated intestinal epithelial cell line, is a promising model for investigating the mechanism of polarized targeting of apical and basolateral membrane proteins. We stably transfected rat GLUT5 cDNA and rabbit GLUT1 cDNA into Caco-2 cells with an expression vector. Immunohistochemical study revealed that the GLUT5 protein expressed was localized at apical membranes and that the GLUT1 expressed was present primarily in the basolateral membranes of cells grown on permeable support. Next, to investigate the domain responsible for determining apical vs. basolateral sorting in glucose transporters, we prepared several GLUT1-GLUT5 chimeric cDNAs and transfected them into Caco-2 cells. A GLUT1 [N terminus approximately sixth transmembrane domain (TM6)]-GLUT5 [intracellular loop (IL) approximately C terminus] chimera was observed exclusively at the apical membrane, while GLUT1 (N terminus approximately IL)-GLUT5 (TM7 approximately C terminus) and GLUT1 (N terminus approximately TM12)-GLUT5 (C-terminal domain) chimeras were observed mainly at the basolateral membrane, a localization similar to that of GLUT1. Moreover, using a recombinant adenovirus expression system, we expressed a GLUT5 (N terminus approximately TM6)-GLUT1(IL)-GLUT5(TM7 approximately C-terminus) chimera, which was observed at the basolateral membrane. Based on these results, the C-terminal domain does not determine isoform-specific targeting of GLUT1 and GLUT5. Rather, it is the intracellular loop in glucose transporters that appears to play a pivotal role in apical-basolateral sorting signals in Caco-2 cells.

[Role of let-7 in maintaining characteristics of breast cancer stem cells].

PubMed

Sun, Xin; Fan, Chong; Hu, Li-juan; Du, Ning; Xu, Chong-wen; Ren, Hong

2012-08-01

To observe the expression of let-7 in breast cancer stem cells and explore the role of let-7 in maintaining the characteristics of breast cancer stem cells. We separated breast cancer stem cells (SP and NSP) from MCF-7 cell line using SP sorting, and observed the expression of let-7a/b/c on SP and NSP cells using quantitative real-time PCR and the expressions of Ras and ERK using Western blotting to study the mechanism by which let-7 maintains the characteristics of breast cancer stem cells. The SP cells accounted for 3.3% in MCF-7 cells, however, the rate dropped to 0.4% when verapamil was added into the process of seperation. The level of Let-7a/b/c in SP cells were lower than that in NSP cells, and among let-7 miRNAs, let-7b/c showed the most obvious difference. The expressions of t-Ras and t-ERK showed no difference between SP and NSP cells, nevertheless, the expressions of p-Ras, p-ERK were higher in SP cells than in NSP cells. SP sorting is an effective method to separate cancer stem cells. There do exist cancer stem cells in MCF-7 breast cancer cell line. Let-7 is down-regulated in SP cells, and the down-regulation makes let-7 lose the opportunity to restrain Ras mRNA, finally, p-Ras and p-ERK are activated. They play an important role in maintaining the characteristics of breast cancer stem cells.

Dielectrophoretic Capture and Genetic Analysis of Single Neuroblastoma Tumor Cells

PubMed Central

Carpenter, Erica L.; Rader, JulieAnn; Ruden, Jacob; Rappaport, Eric F.; Hunter, Kristen N.; Hallberg, Paul L.; Krytska, Kate; O’Dwyer, Peter J.; Mosse, Yael P.

2014-01-01

Our understanding of the diversity of cells that escape the primary tumor and seed micrometastases remains rudimentary, and approaches for studying circulating and disseminated tumor cells have been limited by low throughput and sensitivity, reliance on single parameter sorting, and a focus on enumeration rather than phenotypic and genetic characterization. Here, we utilize a highly sensitive microfluidic and dielectrophoretic approach for the isolation and genetic analysis of individual tumor cells. We employed fluorescence labeling to isolate 208 single cells from spiking experiments conducted with 11 cell lines, including 8 neuroblastoma cell lines, and achieved a capture sensitivity of 1 tumor cell per 106 white blood cells (WBCs). Sample fixation or freezing had no detectable effect on cell capture. Point mutations were accurately detected in the whole genome amplification product of captured single tumor cells but not in negative control WBCs. We applied this approach to capture 144 single tumor cells from 10 bone marrow samples of patients suffering from neuroblastoma. In this pediatric malignancy, high-risk patients often exhibit wide-spread hematogenous metastasis, but access to primary tumor can be difficult or impossible. Here, we used flow-based sorting to pre-enrich samples with tumor involvement below 0.02%. For all patients for whom a mutation in the Anaplastic Lymphoma Kinase gene had already been detected in their primary tumor, the same mutation was detected in single cells from their marrow. These findings demonstrate a novel, non-invasive, and adaptable method for the capture and genetic analysis of single tumor cells from cancer patients. PMID:25133137

Performance evaluation of firefly algorithm with variation in sorting for non-linear benchmark problems

NASA Astrophysics Data System (ADS)

Umbarkar, A. J.; Balande, U. T.; Seth, P. D.

2017-06-01

The field of nature inspired computing and optimization techniques have evolved to solve difficult optimization problems in diverse fields of engineering, science and technology. The firefly attraction process is mimicked in the algorithm for solving optimization problems. In Firefly Algorithm (FA) sorting of fireflies is done by using sorting algorithm. The original FA is proposed with bubble sort for ranking the fireflies. In this paper, the quick sort replaces bubble sort to decrease the time complexity of FA. The dataset used is unconstrained benchmark functions from CEC 2005 [22]. The comparison of FA using bubble sort and FA using quick sort is performed with respect to best, worst, mean, standard deviation, number of comparisons and execution time. The experimental result shows that FA using quick sort requires less number of comparisons but requires more execution time. The increased number of fireflies helps to converge into optimal solution whereas by varying dimension for algorithm performed better at a lower dimension than higher dimension.

The stellar populations of nearby early-type galaxies

NASA Astrophysics Data System (ADS)

Concannon, Kristi Dendy

The recent completion of comprehensive photometric and spectroscopic galaxy surveys has revealed that early-type galaxies form a more heterogeneous family than previously thought. To better understand the star formation histories of early-type galaxies, we have obtained a set of high resolution, high signal-to-noise ratio spectra for a sample of 180 nearby early-type galaxies with the FAST spectrograph and the 1.5m telescope at F. L. Whipple Observatory. The spectra cover the wavelength range 3500 5500 Å which allows the comparison of various Balmer lines, most importantly the higher order lines in the blue, and have a S/N ratio higher than that of previous samples, which makes it easier to investigate the intrinsic spread in the observed parameters. The data set contains galaxies in both the local field and Virgo cluster environment and spans the velocity dispersion range 50 < log σ < 250km s -1. In conjunction with recent improvements in population synthesis modeling, our data set enables us to investigate the star formation history of E/S0 galaxies as a function of mass (σ), environment, and to some extent morphology. We are able to probe the effects of age and metallicity on fundamental observable relations such as the Mg-σ relation, and show that there is a significant spread in age in such diagrams, at all log σ, such that their “uniformity” can not be interpreted as a homogeneous history for early-type galaxies. Analyzing the age and [Fe/H] distribution as a function of the galaxy mass, we find that an age-σ relation exists among galaxies in both the local field and the Virgo cluster, such that the lower log σ galaxies have younger luminosity-weighted mean ages. The age spread of the low σ galaxies suggests that essentially all of the low-mass galaxies contain young to intermediate age populations, whereas the spread in age of the high log σ galaxies (log σ >˜ 2.0) is much larger, with galaxies spanning the age range of 4 19 Gyr. Thus, rather than pointing to all Es and S0s being old, the data show that even the most massive galaxies in our sample span a range of intermediate to old ages.

[A Study of the Relationship Among Genetic Distances, NIR Spectra Distances, and NIR-Based Identification Model Performance of the Seeds of Maize Iinbred Lines].

PubMed

Liu, Xu; Jia, Shi-qiang; Wang, Chun-ying; Liu, Zhe; Gu, Jian-cheng; Zhai, Wei; Li, Shao-ming; Zhang, Xiao-dong; Zhu, De-hai; Huang, Hua-jun; An, Dong

2015-09-01

This paper explored the relationship among genetic distances, NIR spectra distances and NIR-based identification model performance of the seeds of maize inbred lines. Using 3 groups (total 15 pairs) of maize inbred lines whose genetic distaches are different as experimental materials, we calculates the genetic distance between these seeds with SSR markers and uses Euclidean distance between distributed center points of maize NIR spectrum in the PCA space as the distances of NIR spectrum. BPR method is used to build identification model of inbred lines and the identification accuracy is used as a measure of model identification performance. The results showed that, the correlation of genetic distance and spectra distancesis 0.9868, and it has a correlation of 0.9110 with the identification accuracy, which is highly correlated. This means near-Infrared spectrum of seedscan reflect genetic relationship of maize inbred lines. The smaller the genetic distance, the smaller the distance of spectrum, the poorer ability of model to identify. In practical application, near infrared spectrum analysis technology has the potential to be used to analyze maize inbred genetic relations, contributing much to genetic breeding, identification of species, purity sorting and so on. What's more, when creating a NIR-based identification model, the impact of the maize inbred lines which have closer genetic relationship should be fully considered.

Androgen-independent proliferation of LNCaP prostate cancer cells infected by xenotropic murine leukemia virus-related virus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kakoki, Katsura; Department of AIDS Research, Institute of Tropical Medicine, G-COE, Nagasaki University, Nagasaki 852-8523; Department of Urology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523

Highlights: • XMRV infection induces androgen-independent growth in LNCaP cells. • XMRV infection reduces expression of androgen receptor. • XMRV promotes appearance of androgen blocker-resistant prostate cancer cells. - Abstract: Xenotropic murine leukemia virus-related virus (XMRV) is a novel gammaretrovirus that was originally isolated from human prostate cancer. It is now believed that XMRV is not the etiologic agent of prostate cancer. An analysis of murine leukemia virus (MLV) infection in various human cell lines revealed that prostate cancer cell lines are preferentially infected by XMRV, and this suggested that XMRV infection may confer some sort of growth advantage tomore » prostate cancer cell lines. To examine this hypothesis, androgen-dependent LNCaP cells were infected with XMRV and tested for changes in certain cell growth properties. We found that XMRV-infected LNCaP cells can proliferate in the absence of the androgen dihydrotestosterone. Moreover, androgen receptor expression is significantly reduced in XMRV-infected LNCaP cells. Such alterations were not observed in uninfected and amphotropic MLV-infected LNCaP cells. This finding explains why prostate cancer cell lines are preferentially infected with XMRV.« less

Learning cellular sorting pathways using protein interactions and sequence motifs.

PubMed

Lin, Tien-Ho; Bar-Joseph, Ziv; Murphy, Robert F

2011-11-01

Proper subcellular localization is critical for proteins to perform their roles in cellular functions. Proteins are transported by different cellular sorting pathways, some of which take a protein through several intermediate locations until reaching its final destination. The pathway a protein is transported through is determined by carrier proteins that bind to specific sequence motifs. In this article, we present a new method that integrates protein interaction and sequence motif data to model how proteins are sorted through these sorting pathways. We use a hidden Markov model (HMM) to represent protein sorting pathways. The model is able to determine intermediate sorting states and to assign carrier proteins and motifs to the sorting pathways. In simulation studies, we show that the method can accurately recover an underlying sorting model. Using data for yeast, we show that our model leads to accurate prediction of subcellular localization. We also show that the pathways learned by our model recover many known sorting pathways and correctly assign proteins to the path they utilize. The learned model identified new pathways and their putative carriers and motifs and these may represent novel protein sorting mechanisms. Supplementary results and software implementation are available from http://murphylab.web.cmu.edu/software/2010_RECOMB_pathways/.

Recent developments and applications of hyperspectral imaging for rapid detection of mycotoxins and mycotoxigenic fungi in food products.

PubMed

Xing, Fuguo; Yao, Haibo; Liu, Yang; Dai, Xiaofeng; Brown, Robert L; Bhatnagar, Deepak

2017-08-28

Mycotoxins are the foremost naturally occurring contaminants of food products such as corn, peanuts, tree nuts, and wheat. As the secondary metabolites, mycotoxins are mainly synthesized by many species of the genera Aspergillus, Fusarium and Penicillium, and are considered highly toxic and carcinogenic to humans and animals. Most mycotoxins are detected and quantified by analytical chemistry-based methods. While mycotoxigenic fungi are usually identified and quantified by biological methods. However, these methods are time-consuming, laborious, costly, and inconsistent because of the variability of the grain-sampling process. It is desirable to develop rapid, non-destructive and efficient methods that objectively measure and evaluate mycotoxins and mycotoxigenic fungi in food. In recent years, some spectroscopy-based technologies such as hyperspectral imaging (HSI), Raman spectroscopy, and Fourier transform infrared spectroscopy have been extensively investigated for their potential use as tools for the detection, classification, and sorting of mycotoxins and toxigenic fungal contaminants in food. HSI integrates both spatial and spectral information for every pixel in an image, making it suitable for rapid detection of large quantities of samples and more heterogeneous samples and for in-line sorting in the food industry. In order to track the latest research developments in HSI, this paper gives a brief overview of the theories and fundamentals behind the technology and discusses its applications in the field of rapid detection and sorting of mycotoxins and toxigenic fungi in food products. Additionally, advantages and disadvantages of HSI are compared, and its potential use in commercial applications is reported.

Expression analysis of Arabidopsis vacuolar sorting receptor 3 reveals a putative function in guard cells.

PubMed

Avila, Emily L; Brown, Michelle; Pan, Songqin; Desikan, Radhika; Neill, Steven J; Girke, Thomas; Surpin, Marci; Raikhel, Natasha V

2008-01-01

Vacuolar sorting receptors (VSRs) are responsible for the proper targeting of soluble cargo proteins to their destination compartments. The Arabidopsis genome encodes seven VSRs. In this work, the spatio-temporal expression of one of the members of this gene family, AtVSR3, was determined by RT-PCR and promoter::reporter gene fusions. AtVSR3 was expressed specifically in guard cells. Consequently, a reverse genetics approach was taken to determine the function of AtVSR3 by using RNA interference (RNAi) technology. Plants expressing little or no AtVSR3 transcript had a compressed life cycle, bolting approximately 1 week earlier and senescing up to 2 weeks earlier than the wild-type parent line. While the development and distribution of stomata in AtVSR3 RNAi plants appeared normal, stomatal function was altered. The guard cells of mutant plants did not close in response to abscisic acid treatment, and the mean leaf temperatures of the RNAi plants were on average 0.8 degrees C lower than both wild type and another vacuolar sorting receptor mutant, atvsr1-1. Furthermore, the loss of AtVSR3 protein caused the accumulation of nitric oxide and hydrogen peroxide, signalling molecules implicated in the regulation of stomatal opening and closing. Finally, proteomics and western blot analyses of cellular proteins isolated from wild-type and AtVSR3 RNAi leaves showed that phospholipase Dgamma, which may play a role in abscisic acid signalling, accumulated to higher levels in AtVSR3 RNAi guard cells. Thus, AtVSR3 may play an important role in responses to plant stress.

DLK1 as a potential target against cancer stem/progenitor cells of hepatocellular carcinoma.

PubMed

Xu, Xiao; Liu, Rui-Fang; Zhang, Xin; Huang, Li-Yu; Chen, Fei; Fei, Qian-Lan; Han, Ze-Guang

2012-03-01

Delta-like 1 homolog (DLK1; Drosophila) is a hepatic stem/progenitor cell marker in fetal livers that plays a vital role in oncogenesis of hepatocellular carcinoma (HCC). The aim of this study is to investigate whether DLK1 could serve as a potential therapeutic target against cancer stem/progenitor cells of HCC. DLK1(+) and DLK1(-) cells were sorted by fluorescence-activated cell sorting and magnetic-activated cell sorting, respectively, and then were evaluated by flow cytometry. The biological behaviors of these isolated cells and those with DLK1 knockdown were assessed by growth curve, colony formation assay, spheroid colony formation, chemoresistance, and in vivo tumorigenicity. Adenovirus-mediated RNA interference was used to knockdown the endogenous DLK1. We found that DLK1(+) population was less than 10% in almost all 17 HCC cell lines examined. DLK1(+) HCC cells showed stronger ability of chemoresistance, colony formation, spheroid colony formation, and in vivo tumorigenicity compared with DLK1(-) cells. The DLK1(+) HCC cells could generate the progeny without DLK1 expression. Furthermore, DLK1 knockdown could suppress the ability of proliferation, colony formation, spheroid colony formation, and in vivo tumorigenicity of Hep3B and Huh-7 HCC cells. Our data suggested that DLK1(+) HCC cells have characteristics similar to those of cancer stem/progenitor cells. RNA interference against DLK1 can suppress the malignant behaviors of HCC cells, possibly through directly disrupting cancer stem/progenitor cells, which suggested that DLK1 could be a potential therapeutic target against the HCC stem/progenitor cells.

Restoration of the photoreceptor layer and improvement of visual acuity in successfully treated optic disc pit maculopathy: a long follow-up study by optical coherence tomography.

PubMed

Theodossiadis, George P; Grigoropoulos, Vlassis G; Liarakos, Vasilis S; Rouvas, Alexandros; Emfietzoglou, Ioannis; Theodossiadis, Panagiotis G

2012-07-01

To investigate by optical coherence tomography (OCT) the evolution of the photoreceptor layer and its association with best-corrected visual acuity (BCVA) in optic disc pit (ODP) maculopathy after successful surgical treatment. Fourteen eyes of 14 patients were included in this study, and followed up from 36 to 95 months (mean 57.36 ± 18.32 months). The follow-up period started at the time of complete subretinal fluid absorption. Examination was performed by time-domain OCT before and after treatment. Spectral-domain OCT was used after treatment. Parameters assessed were type of elevation, central foveal thickness, time elapsed from onset to treatment, type of treatment, BCVA, and inner segment outer segment (IS/OS) junction line. The IS/OS junction was characterized after treatment as intact, interrupted, or absent (not distinguishable). Significant restoration of the IS/OS junction line was first noticed between 6 and 12 months after fluid absorption (p = 0.02; Wilcoxon signed rank test). Restoration was continuous up to the 24th month of postoperative examination after fluid absorption (p = 0.14; Wilcoxon signed rank test). BCVA was 0.99 ± 0.38 logMar before treatment, 0.81 ± 0.26 logMar (p = 0.011; paired t-test) immediately after fluid absorption and 0.61 ± 0.33 logMar (p = 0.026; one-way ANOVA) 24 months after fluid resolution. BCVA was significantly positively correlated with the integrity of the IS/OS junction line during follow-up (Pearson r = 0.775; p < 0.001). The IS/OS junction restoration cannot be detected immediately after fluid resolution in the majority of cases. It became evident 6-12 months later and was completed 24 months after fluid absorption. Improvement in BCVA was noticed only during the first 2 years of follow-up. No significant changes were noticed in BCVA or the IS/OS line after 2 years. Among the studied variables, the final photoreceptor layer condition and BCVA immediately after fluid absorption are the main factors predicting final BCVA after successful surgical treatment of ODP maculopathy.

An Analytical Approach to the Evolution and Death of AGB Stars

NASA Astrophysics Data System (ADS)

Prager, Henry Alexander; Willson, Lee Anne M.; Marengo, Massimo; Creech-Eakman, Michelle J.

2017-01-01

Pop. I and II stars have a significant amount of metals throughout their structure, In the final stages of their evolution, intermediate mass stars (between 0.7 and 2 solar masses) ascend the Asymptotic Giant Branch (AGB). During their last few hundred thousand years on the AGB, these stars quickly lose their envelopes, recycling their metals as dust into the interstellar medium. The rate at which this happens consequently impacts the formation rate of stars, stellar systems, and the wider distribution of s-process isotopes.At the end of their life cycles, AGB stars experience a steep increase in mass loss rate. We can define the death line in two steps. First we define the critical mass loss rate to be where the mass loss rate equals the initial mass divided by the evolution time. Then the death line is where the rate of change of logMdot equals the rate of change of logL. Most of the stars we observe to be rapidly losing mass appear in the death zone between 0.1 and 10 times the critical mass loss rate.Assuming the mass loss rate increases exponentially with time, or, equivalently, the luminosity increases as a power of a characteristic exponent b, then the width of the death zone is the change in logL. This directly implies time is inversely proportional to b. This can be found for any mass-loss rate formula near the death line. By combining this with what we know about the initial-final mass relation and the core mass-luminosity relation, we can test for b with three observables — duration (width) of the death zone, the amplitude of mass loss variations (when L varies on an observable time scale such as a shell flash), and distributions of luminosity and pulsation period.By applying the initial mass function (IMF) and star formation rate (SFR) of an observed region, we can relate these observables to the characteristic exponent. We will need to look at nearby regions where we can see large numbers of AGB stars, such as the Magellanic clouds. We will show that by fixing the death line and the characteristic exponent that intermediate changes in the mass loss rate better fit observations than extreme values. This is consistent with dust-driven as opposed to pulsation-driven processes.

Cross-cultural investigations.

PubMed

Okamoto, Y; Case, R; Bleiker, C; Henderson, B

1996-01-01

In Piaget's system, the development of children's cognitive structures is seen as progressing through a universal sequence from sensorimotor, to concrete, to formal logical thought. The data that have been obtained on his measures are problematic in their support for this view, however, because they indicate that adults in traditional societies often fail his formal tasks. Piaget's (1972) interpretation of such findings was that they indicated a problem with his measures, not his theory - if appropriate measures were available, he believed that formal logical operations would be found in all cultures and social groups. Our own interpretation differs. While we acknowledge that adults in all cultures are capable of thinking in a fashion that is more sophisticated, subtle, and complex than that of young children, we see the highest forms of thought as being dependent on the mastery of systems that are cultural creations and not universal human attainments - and we see Piaget's system of formal operations as being just one example of the sort of system that can be created by a culture and passed on from one generation to the next. In a previous investigation, Fiati (1992) studied children who were growing up in isolated, agricultural villages in the Volta region of West Africa. In these communities, life was still a traditional one, and children's experiences with time, money, and mathematical computation were considerably different from those of children who were attending schools in the nearby towns. Under these conditions, Fiati found that village children's skill in using numbers or in thinking about quantitative variables did not develop to a very high level as compared to that of their peers in the towns or as compared to their own thinking about social issues. In the terms used in the present Monograph, it appeared as though children's central conceptual structures for number - in contrast to their central conceptual structures for narrative - did not advance much past the unidimensional level. Are unidimensional structures, at least, universal? Very probably the answer to this question is yes. Although systems for counting, for example, vary widely, no culture has yet been found in which counting does not play some role or where young children fail to pass Piaget's conservation of number test (Saxe, 1988). It seems highly likely, therefore, that a mental counting line of some sort is a universal construction. The situation in the domain of narrative is quite similar. Although folktales vary widely from one culture to the next, no culture has been reported in which folktales play no role whatever or where the story line of existing folktales does not have some form of intentional component (Propp, 1922/1968). The mental story line may thus be a universal construction as well. Finally, no culture has been reported in which some form of decorative art is not present or in which no technology exists for launching a projectile along a desired trajectory. If these activities require a mental reference line of some sort, then this would be a candidate for universal conceptual attainment as well. In the present series of studies, our investigations were confined to societies that are modern, highly literate, and schooled. Thus, our interest was in demonstrating a universal progression well beyond the unidimensional level, in the sorts of structure that are crucial to life in a modern industrial culture. In fact, this was what we found in each of our studies. On our tests of central conceptual structures, children progressed through the same stages and at the same rate. By contrast, on our tests of more specific understanding, especially on those dealing with issues on which different cultures place different emphasis, we found large and significant cross-national differences. From this we conclude that, if a culture values a particular task or set of tasks and invests a great deal of effort in teaching them, it is likely that the

Automatically assisting human memory: a SenseCam browser.

PubMed

Doherty, Aiden R; Moulin, Chris J A; Smeaton, Alan F

2011-10-01

SenseCams have many potential applications as tools for lifelogging, including the possibility of use as a memory rehabilitation tool. Given that a SenseCam can log hundreds of thousands of images per year, it is critical that these be presented to the viewer in a manner that supports the aims of memory rehabilitation. In this article we report a software browser constructed with the aim of using the characteristics of memory to organise SenseCam images into a form that makes the wealth of information stored on SenseCam more accessible. To enable a large amount of visual information to be easily and quickly assimilated by a user, we apply a series of automatic content analysis techniques to structure the images into "events", suggest their relative importance, and select representative images for each. This minimises effort when browsing and searching. We provide anecdotes on use of such a system and emphasise the need for SenseCam images to be meaningfully sorted using such a browser.

Synopsis of a computer program designed to interface a personal computer with the fast data acquisition system of a time-of-flight mass spectrometer

NASA Technical Reports Server (NTRS)

Bechtel, R. D.; Mateos, M. A.; Lincoln, K. A.

1988-01-01

Briefly described are the essential features of a computer program designed to interface a personal computer with the fast, digital data acquisition system of a time-of-flight mass spectrometer. The instrumentation was developed to provide a time-resolved analysis of individual vapor pulses produced by the incidence of a pulsed laser beam on an ablative material. The high repetition rate spectrometer coupled to a fast transient recorder captures complete mass spectra every 20 to 35 microsecs, thereby providing the time resolution needed for the study of this sort of transient event. The program enables the computer to record the large amount of data generated by the system in short time intervals, and it provides the operator the immediate option of presenting the spectral data in several different formats. Furthermore, the system does this with a high degree of automation, including the tasks of mass labeling the spectra and logging pertinent instrumental parameters.

On the statistical mechanics of species abundance distributions.

PubMed

Bowler, Michael G; Kelly, Colleen K

2012-09-01

A central issue in ecology is that of the factors determining the relative abundance of species within a natural community. The proper application of the principles of statistical physics to species abundance distributions (SADs) shows that simple ecological properties could account for the near universal features observed. These properties are (i) a limit on the number of individuals in an ecological guild and (ii) per capita birth and death rates. They underpin the neutral theory of Hubbell (2001), the master equation approach of Volkov et al. (2003, 2005) and the idiosyncratic (extreme niche) theory of Pueyo et al. (2007); they result in an underlying log series SAD, regardless of neutral or niche dynamics. The success of statistical mechanics in this application implies that communities are in dynamic equilibrium and hence that niches must be flexible and that temporal fluctuations on all sorts of scales are likely to be important in community structure. Copyright © 2012 Elsevier Inc. All rights reserved.

Hydrothermal Vents of Juan de Fuca Ridge

NASA Astrophysics Data System (ADS)

Stark, Joyce

As a member of REVEL (Research and Education: Volcanoes, Exploration and Life), I had an opportunity to participant in a scientific research cruise focused on the active volcanoes along the Juan de Fuca Ridge, the submarine spreading center off the Washington- Oregon-Canada coast. REVEL was sponsored by the National Science Foundation, University of Washington, Pennsylvania State University and the American Museum of Natural History. We studied the geological, chemical and biological processes associated with active hydrothermal systems and my research focused on the biological communities of the sulfide structures. We worked on board the Woods Hole Oceanographic Institution Vessel, R/V Atlantis and the submersible ALVIN was used to sample the "Black Smokers". As a member of the scientific party, I participated in collection and sorting of biological specimens from the vent communities, attended lectures by scientists, contributed to the cruise log website, maintained a journal and developed my own research project. It was my responsibility to bring this cutting-edge research back to the classroom.

Comparative transcriptional profiling of two wheat genotypes, with contrasting levels of minerals in grains, shows expression differences during grain filling.

PubMed

Singh, Sudhir P; Jeet, Raja; Kumar, Jitendra; Shukla, Vishnu; Srivastava, Rakesh; Mantri, Shrikant S; Tuli, Rakesh

2014-01-01

Wheat is one of the most important cereal crops in the world. To identify the candidate genes for mineral accumulation, it is important to examine differential transcriptome between wheat genotypes, with contrasting levels of minerals in grains. A transcriptional comparison of developing grains was carried out between two wheat genotypes- Triticum aestivum Cv. WL711 (low grain mineral), and T. aestivum L. IITR26 (high grain mineral), using Affymetrix GeneChip Wheat Genome Array. The study identified a total of 580 probe sets as differentially expressed (with log2 fold change of ≥2 at p≤0.01) between the two genotypes, during grain filling. Transcripts with significant differences in induction or repression between the two genotypes included genes related to metal homeostasis, metal tolerance, lignin and flavonoid biosynthesis, amino acid and protein transport, vacuolar-sorting receptor, aquaporins, and stress responses. Meta-analysis revealed spatial and temporal signatures of a majority of the differentially regulated transcripts.

Comparative Transcriptional Profiling of Two Wheat Genotypes, with Contrasting Levels of Minerals in Grains, Shows Expression Differences during Grain Filling

PubMed Central

Singh, Sudhir P.; Jeet, Raja; Kumar, Jitendra; Shukla, Vishnu; Srivastava, Rakesh; Mantri, Shrikant S.; Tuli, Rakesh

2014-01-01

Wheat is one of the most important cereal crops in the world. To identify the candidate genes for mineral accumulation, it is important to examine differential transcriptome between wheat genotypes, with contrasting levels of minerals in grains. A transcriptional comparison of developing grains was carried out between two wheat genotypes- Triticum aestivum Cv. WL711 (low grain mineral), and T. aestivum L. IITR26 (high grain mineral), using Affymetrix GeneChip Wheat Genome Array. The study identified a total of 580 probe sets as differentially expressed (with log2 fold change of ≥2 at p≤0.01) between the two genotypes, during grain filling. Transcripts with significant differences in induction or repression between the two genotypes included genes related to metal homeostasis, metal tolerance, lignin and flavonoid biosynthesis, amino acid and protein transport, vacuolar-sorting receptor, aquaporins, and stress responses. Meta-analysis revealed spatial and temporal signatures of a majority of the differentially regulated transcripts. PMID:25364903

Birth of kids after artificial insemination with sex-sorted, frozen-thawed goat spermatozoa.

PubMed

Bathgate, R; Mace, N; Heasman, K; Evans, G; Maxwell, W M C; de Graaf, S P

2013-12-01

Successful sex-sorting of goat spermatozoa and subsequent birth of pre-sexed kids have yet to be reported. As such, a series of experiments were conducted to develop protocols for sperm-sorting (using a modified flow cytometer, MoFlo SX(®) ) and cryopreservation of goat spermatozoa. Saanen goat spermatozoa (n = 2 males) were (i) collected into Salamon's or Tris catch media post-sorting and (ii) frozen in Tris-citrate-glucose media supplemented with 5, 10 or 20% egg yolk in (iii) 0.25 ml pellets on dry ice or 0.25 ml straws in a controlled-rate freezer. Post-sort and post-thaw sperm quality were assessed by motility (CASA), viability and acrosome integrity (PI/FITC-PNA). Sex-sorted goat spermatozoa frozen in pellets displayed significantly higher post-thaw motility and viability than spermatozoa frozen in straws. Catch media and differing egg yolk concentration had no effect on the sperm parameters tested. The in vitro and in vivo fertility of sex-sorted goat spermatozoa produced with this optimum protocol were then tested by means of a heterologous ova binding assay and intrauterine artificial insemination of Saanen goat does, respectively. Sex-sorted goat spermatozoa bound to sheep ova zona pellucidae in similar numbers (p > 0.05) to non-sorted goat spermatozoa, non-sorted ram spermatozoa and sex-sorted ram spermatozoa. Following intrauterine artificial insemination with sex-sorted spermatozoa, 38% (5/13) of does kidded with 83% (3/5) of kids being of the expected sex. Does inseminated with non-sorted spermatozoa achieved a 50% (3/6) kidding rate and a sex ratio of 3 : 1 (F : M). This study demonstrates for the first time that goat spermatozoa can be sex-sorted by flow cytometry, successfully frozen and used to produce pre-sexed kids. © 2013 Blackwell Verlag GmbH.

X-Ray Reflected Spectra from Accretion Disk Models. II. Diagnostic Tools for X-Ray Observations

NASA Technical Reports Server (NTRS)

Garcia, J.; Kallman, T. R.; Mushotzky, R. F.

2011-01-01

We present a comprehensive study of the emission spectra from accreting sources. We use our new reflection code to compute the reflected spectra from an accretion disk illuminated by X-rays. This set of models covers different values of ionization parameter, solar iron abundance and photon index for the illuminating spectrum. These models also include the most complete and recent atomic data for the inner-shell of the iron and oxygen isonuclear sequences. We concentrate our analysis to the 2 - 10 keV energy region, and in particular to the iron K-shell emission lines. We show the dependency of the equivalent width (EW) of the Fe Ka with the ionization parameter. The maximum value of the EW is approx. 800 eV for models with log Epsilon approx. 1.5, and decreases monotonically as Epsilon increases. For lower values of Epsilon the Fe K(alpha) EW decreases to a minimum near log Epsilon approx. 0.8. We produce simulated CCD observations based on our reflection models. For low ionized, reflection dominated cases, the 2 -10 keV energy region shows a very broad, curving continuum that cannot be represented by a simple power-law. We show that in addition to the Fe K-shell emission, there are other prominent features such as the Si and S L(alpha) lines, a blend of Ar VIII-XI lines, and the Ca x K(alpha) line. In some cases the S xv blends with the He-like Si RRC producing a broad feature that cannot be reproduced by a simple Gaussian profile. This could be used as a signature of reflection.