The gene for pancreatic polypeptide (PPY) and the anonymous marker D17S78 are within 45 kb of each other on chromosome 17q21

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chandrasekharappa, S.C.; King, S.E.; Lee, Y.H.

1994-05-15

A gene for early-onset breast and ovarian cancer (BRCA1) has been localized to a small region of chromosome 17q21. A combination of genetic linkage studies, radiation-reduced hybrid analysis, and physical mapping by FISH has identified several genes/markers that lie in this interval. Among these are the gene encoding pancreatic polypeptide (PPY) and a polymorphic marker at locus D17S78. Efforts to construct a physical map of this region by isolating a large number of yeast artificial chromosome (YAC) and cosmid clones demonstrate that PPY and D17S78 are present within the same cosmid clone, and therefore no farther than 45 kb apart.more » This observation takes on particular significance since it excludes a recently described BRCA1 candidate gene from the interval defined by meiotic mapping. Although PPY and D17S78 were found to be no farther than 45 kb apart, identification of a smaller fragment that hybridizes to both probes would indicate that these two are much closer. The probe p131 and the gene PPY were previously mapped to 17q21-q23 and to the proximal long arm of chromosome 17, respectively. The demonstration of the close proximity of these markers should allow them to be treated as a single locus in terms of long-range genomic mapping of this region, and the genomic clones isolated should serve as useful resources for the identification of the BRCA1 gene. Analysis of a large number of a familial and spordic breast and ovarian cancers has identified frequent loss of heterozygosity near the BRCA1 locus. A recent report has suggested the responsible interval lies just telomeric to PPY, and a suggested candidate gene (MCD) for BRCA1 was found to be somatically rearranged in two of several hundred sporadic breast tumors.« less

The Wigner distribution and 2D classical maps

NASA Astrophysics Data System (ADS)

Sakhr, Jamal

2017-07-01

The Wigner spacing distribution has a long and illustrious history in nuclear physics and in the quantum mechanics of classically chaotic systems. In this paper, a novel connection between the Wigner distribution and 2D classical mechanics is introduced. Based on a well-known correspondence between the Wigner distribution and the 2D Poisson point process, the hypothesis that typical pseudo-trajectories of a 2D ergodic map have a Wignerian nearest-neighbor spacing distribution (NNSD) is put forward and numerically tested. The standard Euclidean metric is used to compute the interpoint spacings. In all test cases, the hypothesis is upheld, and the range of validity of the hypothesis appears to be robust in the sense that it is not affected by the presence or absence of: (i) mixing; (ii) time-reversal symmetry; and/or (iii) dissipation.

Mapping alpha-Particle X-Ray Fluorescence Spectrometer (Map-X)

NASA Technical Reports Server (NTRS)

Blake, D. F.; Sarrazin, P.; Bristow, T.

2014-01-01

Many planetary surface processes (like physical and chemical weathering, water activity, diagenesis, low-temperature or impact metamorphism, and biogenic activity) leave traces of their actions as features in the size range 10s to 100s of micron. The Mapping alpha-particle X-ray Spectrometer ("Map-X") is intended to provide chemical imaging at 2 orders of magnitude higher spatial resolution than previously flown instruments, yielding elemental chemistry at or below the scale length where many relict physical, chemical, and biological features can be imaged and interpreted in ancient rocks.

Characterization of Atmospheric Infrasound for Improved Weather Monitoring

NASA Astrophysics Data System (ADS)

Threatt, Arnesha; Elbing, Brian

2016-11-01

Collaboration Leading Operational UAS Development for Meteorology and Atmospheric Physics (CLOUD MAP) is a multi-university collaboration focused on development and implementation of unmanned aircraft systems (UAS) and integration with sensors for atmospheric measurements. A primary objective for this project is to create and demonstrate UAS capabilities needed to support UAS operating in extreme conditions, such as a tornado producing storm system. These storm systems emit infrasound (acoustic signals below human hearing, <20 Hz) up to 2 hours before tornadogenesis. Due to an acoustic ceiling and weak atmospheric absorption, infrasound can be detected from distances in excess of 300 miles. Thus infrasound could be used for long-range, passive monitoring and detection of tornadogenesis as well as directing UAS resources to high-decision-value-information. To achieve this the infrasonic signals with and without severe storms must be understood. This presentation will report findings from the first CLOUD MAP field demonstration, which acquired infrasonic signals while simultaneously sampling the atmosphere with UAS. Infrasonic spectra will be shown from a typical calm day, a continuous source (pulsed gas-combustion torch), singular events, and UAS flights as well as localization results from a controlled source and multiple microphones. This work was supported by NSF Grant 1539070: CLOUD MAP - Collaboration Leading Operational UAS Development for Meteorology and Atmospheric Physics.

Long-range Kitaev chains via planar Josephson junctions

NASA Astrophysics Data System (ADS)

Liu, Dillon T.; Shabani, Javad; Mitra, Aditi

2018-06-01

We show how a recently proposed solid-state Majorana platform comprising a planar Josephson junction proximitized to a 2D electron gas (2DEG) with Rashba spin-orbit coupling and Zeeman field can be viewed as an effectively one-dimensional (1D) Kitaev chain with long-range pairing and hopping terms. We highlight how the couplings of the 1D system may be tuned by changing experimentally realistic parameters. We also show that the mapping is robust to disorder by computing the Clifford pseudospectrum index in real space for the long-range Kitaev chain across several topological phases. This mapping opens up the possibility of using current experimental setups to explore 1D topological superconductors with nonstandard and tunable couplings.

A Physical Map, Including a BAC/PAC Clone Contig, of the Williams-Beuren Syndrome–Deletion Region at 7q11.23

PubMed Central

Peoples, Risa; Franke, Yvonne; Wang, Yu-Ker; Pérez-Jurado, Luis; Paperna, Tamar; Cisco, Michael; Francke, Uta

2000-01-01

Summary Williams-Beuren syndrome (WBS) is a developmental disorder caused by haploinsufficiency for genes in a 2-cM region of chromosome band 7q11.23. With the exception of vascular stenoses due to deletion of the elastin gene, the various features of WBS have not yet been attributed to specific genes. Although ⩾16 genes have been identified within the WBS deletion, completion of a physical map of the region has been difficult because of the large duplicated regions flanking the deletion. We present a physical map of the WBS deletion and flanking regions, based on assembly of a bacterial artificial chromosome/P1-derived artificial chromosome contig, analysis of high-throughput genome-sequence data, and long-range restriction mapping of genomic and cloned DNA by pulsed-field gel electrophoresis. Our map encompasses 3 Mb, including 1.6 Mb within the deletion. Two large duplicons, flanking the deletion, of ⩾320 kb contain unique sequence elements from the internal border regions of the deletion, such as sequences from GTF2I (telomeric) and FKBP6 (centromeric). A third copy of this duplicon exists in inverted orientation distal to the telomeric flanking one. These duplicons show stronger sequence conservation with regard to each other than to the presumptive ancestral loci within the common deletion region. Sequence elements originating from beyond 7q11.23 are also present in these duplicons. Although the duplicons are not present in mice, the order of the single-copy genes in the conserved syntenic region of mouse chromosome 5 is inverted relative to the human map. A model is presented for a mechanism of WBS-deletion formation, based on the orientation of duplicons' components relative to each other and to the ancestral elements within the deletion region. PMID:10631136

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence.

PubMed

Grattapaglia, Dario; Mamani, Eva M C; Silva-Junior, Orzenil B; Faria, Danielle A

2015-03-01

Keystone species in their native ranges, eucalypts, are ecologically and genetically very diverse, growing naturally along extensive latitudinal and altitudinal ranges and variable environments. Besides their ecological importance, eucalypts are also the most widely planted trees for sustainable forestry in the world. We report the development of a novel collection of 535 microsatellites for species of Eucalyptus, 494 designed from ESTs and 41 from genomic libraries. A selected subset of 223 was evaluated for individual identification, parentage testing, and ancestral information content in the two most extensively studied species, Eucalyptus grandis and Eucalyptus globulus. Microsatellites showed high transferability and overlapping allele size range, suggesting they have arisen still in their common ancestor and confirming the extensive genome conservation between these two species. A consensus linkage map with 437 microsatellites, the most comprehensive microsatellite-only genetic map for Eucalyptus, was built by assembling segregation data from three mapping populations and anchored to the Eucalyptus genome. An overall colinearity between recombination-based and physical positioning of 84% of the mapped microsatellites was observed, with some ordering discrepancies and sporadic locus duplications, consistent with the recently described whole genome duplication events in Eucalyptus. The linkage map covered 95.2% of the 605.8-Mbp assembled genome sequence, placing one microsatellite every 1.55 Mbp on average, and an overall estimate of physical to recombination distance of 618 kbp/cM. The genetic parameters estimates together with linkage and physical position data for this large set of microsatellites should assist marker choice for genome-wide population genetics and comparative mapping in Eucalyptus. © 2014 John Wiley & Sons Ltd.

Apparatus for Teaching Physics.

ERIC Educational Resources Information Center

Gottlieb, Herbert H., Ed.

1979-01-01

Six different pieces of physics apparatus are described: Telsa Coil for instant ignition of sodium arc lamps, Timekube, Magnetic Maps of the United States, a slinky with vertical mounting, a wave generator power supply, and a long-period timer power switch. Price and supplier are included. (BT)

USGS advances in integrated, high-resolution sea-floor mapping: inner continental shelf to estuaries

USGS Publications Warehouse

Denny, J.F.; Schwab, W.C.; Twichell, D.C.; O'Brien, T.F.; Danforth, W.W.; Foster, D.S.; Bergeron, E.; Worley, C.W.; Irwin, B.J.; Butman, B.; Valentine, P.C.; Baldwin, W.E.; Morton, R.A.; Thieler, E.R.; Nichols, D.R.; Andrews, B.D.

2007-01-01

The U.S. Geological Survey (USGS) has been involved in geological mapping of the sea floor for the past thirty years. Early geophysical and acoustic mapping efforts using GLORIA (Geologic LOng Range Inclined ASDIC) a long-range sidescan-sonar system, provided broad-scale imagery of deep waters within the U.S. Exclusive Economic Zone (EEZ). In the early 1990's, research emphasis shifted from deep- to shallow-water environments to address pertinent coastal research and resource management issues. Use of shallow-water, high-resolution geophysical systems has enhanced our understanding of the processes shaping shallow marine environments. However, research within these shallow-water environments continues to present technological challenges.

Determinants of physical activity in America: a first characterization of physical activity profile using the National Health and Nutrition Examination Survey (NHANES).

PubMed

Kao, Ming-Chih Jeffrey; Jarosz, Renata; Goldin, Michael; Patel, Amy; Smuck, Matthew

2014-10-01

To develop and implement methodologies for characterizing accelerometry-derived patterns of physical activity (PA) in the United States in relation to demographics, anthropometrics, behaviors, and comorbidities using the National Health and Nutrition Examination Survey (NHANES) dataset. Retrospective analysis of nationally representative database. Computer-generated modeling in silico. A total of 6329 adults in the United States from the NHANES 2003-2004 database. To discover subtle multivariate signal in the dynamic and noisy accelerometry data, we developed a novel approach, termed discretized multiple adaptive regression and implemented the algorithm in SAS 9.2 (SAS Institute, Cary, NC). Demographic, anthropometric, comorbidity, and behavioral variables. The intensity of PA decreased with both increased age and increased body mass index. Both greater education and greater income correlate with increased activity over short durations and reduced activity intensity over long durations. Numerous predictors demonstrated effects within activity ranges that may be masked by use of the standard activity intensity intervals. These include age, one of the most robust variables, where we discovered decreasing activities inside the moderate activity range. It also includes gender, where women compared with men have increased proportions of active times up to the center of light activity range, and income greater than $45,000, where a complex effect is seen with little correspondence to existing cut-points. The results presented in this study suggest that the method of multiple regression and heat map visualization can generate insights otherwise hidden in large datasets such as NHANES. A review of the provided heat maps reveals the trends discussed previously involving demographic, anthropometric, comorbidity, and behavioral variables. It also demonstrates the power of accelerometry to expose alterations in PA. Ultimately, this study provides a US population-based norm to use in future studies of PA. Copyright © 2014 American Academy of Physical Medicine and Rehabilitation. Published by Elsevier Inc. All rights reserved.

Mineral mapping and applications of imaging spectroscopy

USGS Publications Warehouse

Clark, R.N.; Boardman, J.; Mustard, J.; Kruse, F.; Ong, C.; Pieters, C.; Swayze, G.A.

2006-01-01

Spectroscopy is a tool that has been used for decades to identify, understand, and quantify solid, liquid, or gaseous materials, especially in the laboratory. In disciplines ranging from astronomy to chemistry, spectroscopic measurements are used to detect absorption and emission features due to specific chemical bonds, and detailed analyses are used to determine the abundance and physical state of the detected absorbing/emitting species. Spectroscopic measurements have a long history in the study of the Earth and planets. Up to the 1990s remote spectroscopic measurements of Earth and planets were dominated by multispectral imaging experiments that collect high-quality images in a few, usually broad, spectral bands or with point spectrometers that obtained good spectral resolution but at only a few spatial positions. However, a new generation of sensors is now available that combines imaging with spectroscopy to create the new discipline of imaging spectroscopy. Imaging spectrometers acquire data with enough spectral range, resolution, and sampling at every pixel in a raster image so that individual absorption features can be identified and spatially mapped (Goetz et al., 1985).

Duality in Power-Law Localization in Disordered One-Dimensional Systems

NASA Astrophysics Data System (ADS)

Deng, X.; Kravtsov, V. E.; Shlyapnikov, G. V.; Santos, L.

2018-03-01

The transport of excitations between pinned particles in many physical systems may be mapped to single-particle models with power-law hopping, 1 /ra . For randomly spaced particles, these models present an effective peculiar disorder that leads to surprising localization properties. We show that in one-dimensional systems almost all eigenstates (except for a few states close to the ground state) are power-law localized for any value of a >0 . Moreover, we show that our model is an example of a new universality class of models with power-law hopping, characterized by a duality between systems with long-range hops (a <1 ) and short-range hops (a >1 ), in which the wave function amplitude falls off algebraically with the same power γ from the localization center.

Rewiring the connectome: Evidence and effects.

PubMed

Bennett, Sophie H; Kirby, Alastair J; Finnerty, Gerald T

2018-05-01

Neuronal connections form the physical basis for communication in the brain. Recently, there has been much interest in mapping the "connectome" to understand how brain structure gives rise to brain function, and ultimately, to behaviour. These attempts to map the connectome have largely assumed that connections are stable once formed. Recent studies, however, indicate that connections in mammalian brains may undergo rewiring during learning and experience-dependent plasticity. This suggests that the connectome is more dynamic than previously thought. To what extent can neural circuitry be rewired in the healthy adult brain? The connectome has been subdivided into multiple levels of scale, from synapses and microcircuits through to long-range tracts. Here, we examine the evidence for rewiring at each level. We then consider the role played by rewiring during learning. We conclude that harnessing rewiring offers new avenues to treat brain diseases. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

The long-range shelling of Paris and physical chemistry problems of extremely long-range firing

NASA Astrophysics Data System (ADS)

Stettbacher, A.

1986-04-01

The 128-km long-range artillery shelling of Paris is discussed considering its physical and chemical make-up from the vantage point of the technology in 1919. It compares this shelling with a hypothetical 240-km shelling and concludes that the most important influence on shelling range distance to be air resistance. The amount of air resistance and the resulting velocity deceleration depend on the air's density and the shell's velocity and configuration.

HectoMAPping the Universe. Karl Schwarzschild Award Lecture 2014

NASA Astrophysics Data System (ADS)

Geller, Margaret J.; Hwang, Ho Seong

2015-06-01

During the last three decades progress in mapping the Universe from an age of 400 000 years to the present has been stunning. Instrument/telescope combinations have naturally determined the sampling of various redshift ranges. Here we outline the impact of the Hectospec on the MMT on exploration of the Universe in the redshift range 0.2 ⪉ z ⪉ 0.8. We focus on dense redshift surveys, SHELS and HectoMAP. SHELS is a complete magnitude limited survey covering 8 square degrees. The HectoMAP survey combines a red-selected dense redshift survey and a weak lensing map covering 50 square degrees. Combining the dense redshift survey with a Subaru HyperSuprimeCam (HSC) weak lensing map will provide a powerful probe of the way galaxies trace the distribution of dark matter on a wide range of physical scales.

Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials

USDA-ARS?s Scientific Manuscript database

Mutations often accompany DNA replication. Since there may be fewer cell cycles per year in the germlines of long-lived than short-lived angiosperms, the genomes of long-lived angiosperms may be diverging more slowly than those of short-lived angiosperms. Here we test this hypothesis. We first const...

A Control Algorithm for Chaotic Physical Systems

DTIC Science & Technology

1991-10-01

revision expands the grid to cover the entire area of any attractor that is present. 5 Map Selection The final choices of the state- space mapping process...interval h?; overrange R0 ; control parameter interval AkO and range [kbro, khigh]; iteration depth. "* State- space mapping : 1. Set up grid by expanding

Fusion of Terrestrial and Airborne Laser Data for 3D modeling Applications

NASA Astrophysics Data System (ADS)

Mohammed, Hani Mahmoud

This thesis deals with the 3D modeling phase of the as-built large BIM projects. Among several means of BIM data capturing, such as photogrammetric or range tools, laser scanners have been one of the most efficient and practical tool for a long time. They can generate point clouds with high resolution for 3D models that meet nowadays' market demands. The current 3D modeling projects of as-built BIMs are mainly focused on using one type of laser scanner data, such as Airborne or Terrestrial. According to the literatures, no significant (few) efforts were made towards the fusion of heterogeneous laser scanner data despite its importance. The importance of the fusion of heterogeneous data arises from the fact that no single type of laser data can provide all the information about BIM, especially for large BIM projects that are existing on a large area, such as university buildings, or Heritage places. Terrestrial laser scanners are able to map facades of buildings and other terrestrial objects. However, they lack the ability to map roofs or higher parts in the BIM project. Airborne laser scanner on the other hand, can map roofs of the buildings efficiently and can map only small part of the facades. Short range laser scanners can map the interiors of the BIM projects, while long range scanners are used for mapping wide exterior areas in BIM projects. In this thesis the long range laser scanner data obtained in the Stop-and-Go mapping mode, the short range laser scanner data, obtained in a fully static mapping mode, and the airborne laser data are all fused together to bring a complete effective solution for a large BIM project. Working towards the 3D modeling of BIM projects, the thesis framework starts with the registration of the data, where a new fast automatic registration algorithm were developed. The next step is to recognize the different objects in the BIM project (classification), and obtain 3D models for the buildings. The last step is the development of an occlusion removal algorithm to efficiently retain parts of the buildings occluded by surrounding objects such as trees, vehicles, or street poles.

A third-generation microsatellite-based linkage map of the honey bee, Apis mellifera, and its comparison with the sequence-based physical map.

PubMed

Solignac, Michel; Mougel, Florence; Vautrin, Dominique; Monnerot, Monique; Cornuet, Jean-Marie

2007-01-01

The honey bee is a key model for social behavior and this feature led to the selection of the species for genome sequencing. A genetic map is a necessary companion to the sequence. In addition, because there was originally no physical map for the honey bee genome project, a meiotic map was the only resource for organizing the sequence assembly on the chromosomes. We present the genetic (meiotic) map here and describe the main features that emerged from comparison with the sequence-based physical map. The genetic map of the honey bee is saturated and the chromosomes are oriented from the centromeric to the telomeric regions. The map is based on 2,008 markers and is about 40 Morgans (M) long, resulting in a marker density of one every 2.05 centiMorgans (cM). For the 186 megabases (Mb) of the genome mapped and assembled, this corresponds to a very high average recombination rate of 22.04 cM/Mb. Honey bee meiosis shows a relatively homogeneous recombination rate along and across chromosomes, as well as within and between individuals. Interference is higher than inferred from the Kosambi function of distance. In addition, numerous recombination hotspots are dispersed over the genome. The very large genetic length of the honey bee genome, its small physical size and an almost complete genome sequence with a relatively low number of genes suggest a very promising future for association mapping in the honey bee, particularly as the existence of haploid males allows easy bulk segregant analysis.

How Long Was the Coast of Ireland? Investigating the Variation of the Fractal Dimension of Maps over Time

ERIC Educational Resources Information Center

McCartney, M.; Myers, D.; Sun, Y.

2008-01-01

The divider dimensions of a range of maps of Ireland dating from 1567 to 1893 are evaluated, and it is shown that for maps produced before 1650 the fractal dimension of the map can be correlated to its date of publication. Various classroom uses and extensions are discussed. (Contains 2 figures.)

Long-read sequencing and de novo assembly of a Chinese genome

USDA-ARS?s Scientific Manuscript database

Short-read sequencing has enabled the de novo assembly of several individual human genomes, but with inherent limitations in characterizing repeat elements. Here we sequence a Chinese individual HX1 by single-molecule real-time (SMRT) long-read sequencing, construct a physical map by NanoChannel arr...

Genome organization and long-range regulation of gene expression by enhancers

PubMed Central

Smallwood, Andrea; Ren, Bing

2014-01-01

It is now well accepted that cell-type specific gene regulation is under the purview of enhancers. Great strides have been made recently to characterize and identify enhancers both genetically and epigenetically for multiple cell types and species, but efforts have just begun to link enhancers to their target promoters. Mapping these interactions and understanding how the 3D landscape of the genome constrains such interactions is fundamental to our understanding of mammalian gene regulation. Here, we review recent progress in mapping long-range regulatory interactions in mammalian genomes, focusing on transcriptional enhancers and chromatin organization principles. PMID:23465541

Long-range correlation in cosmic microwave background radiation.

PubMed

Movahed, M Sadegh; Ghasemi, F; Rahvar, Sohrab; Tabar, M Reza Rahimi

2011-08-01

We investigate the statistical anisotropy and gaussianity of temperature fluctuations of Cosmic Microwave Background (CMB) radiation data from the Wilkinson Microwave Anisotropy Probe survey, using the Multifractal Detrended Fluctuation Analysis, Rescaled Range, and Scaled Windowed Variance methods. Multifractal Detrended Fluctuation Analysis shows that CMB fluctuations has a long-range correlation function with a multifractal behavior. By comparing the shuffled and surrogate series of CMB data, we conclude that the multifractality nature of the temperature fluctuation of CMB radiation is mainly due to the long-range correlations, and the map is consistent with a gaussian distribution.

Universality in the Evolution of Orientation Columns in the Visual Cortex

PubMed Central

Kaschube, Matthias; Schnabel, Michael; Löwel, Siegrid; Coppola, David M.; White, Leonard E.; Wolf, Fred

2011-01-01

The brain’s visual cortex processes information concerning form, pattern, and motion within functional maps that reflect the layout of neuronal circuits. We analyzed functional maps of orientation preference in the ferret, tree shrew, and galago—three species separated since the basal radiation of placental mammals more than 65 million years ago—and found a common organizing principle. A symmetry-based class of models for the self-organization of cortical networks predicts all essential features of the layout of these neuronal circuits, but only if suppressive long-range interactions dominate development. We show mathematically that orientation-selective long-range connectivity can mediate the required interactions. Our results suggest that self-organization has canalized the evolution of the neuronal circuitry underlying orientation preference maps into a single common design. PMID:21051599

Underwater Landscape Evolution in the Peconic Bays (Long Island, NY) as revealed by High-Resolution Multibeam Mapping

NASA Astrophysics Data System (ADS)

Flood, R. D.; Kinney, J.; Weaver, M.

2006-12-01

The Peconic Bays, an estuary of the National Estuary Program, is about 50 km long and 10 km wide, ranges in depth to 20-30 m and is located between the North Fork and South Fork at the east end of Long Island. There is much interest in the nature and distribution of benthic habitats within this estuary, and we have been conducting high-resolution side-scan sonar and multibeam bathymetry and backscatter studies to understand sediment distribution patterns and physical processes and to guide benthic sampling. Our initial results indicate that the seabed morphology in this area has been shaped by a range of biological and physical processes that have been occurring since glacial times. Morphological elements of the seafloor include apparent glacial-aged topography, eroded glacial deposits, early post-glacial canyons and channels, widespread relict oyster reefs, modern migrating sand banks, restricted areas of modern mud accumulation, and active sand waves. The wide range of morphological elements representing a relatively long time span is apparently due to the fact that the area has been protected from large, erosive ocean waves during the post- glacial sea-level rise and thus there was apparently little wave-induced erosion at the shoreline. Also, there is not a very large modern sediment supply. The largest river on Long Island (the Peconic River) drains into the area. The Peconic River is about 25 km long with a drainage area of 200 km2 and drains a low-relief terrain. That river drains into Great Peconic Bay which may have trapped most of the sediment load. Additional modern sediment is derived from the erosion of glacial cliffs, but a low sediment supply plus strong currents results in insufficient sediment deposition to cover the relict topography in many areas. In addition to underscoring the importance of older environments in controlling more recent sedimentation patterns, observations suggest that important post-glacial and early interglacial climate records may be preserved in Peconic Bay sediments.

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes.

PubMed

Staňková, Helena; Hastie, Alex R; Chan, Saki; Vrána, Jan; Tulpová, Zuzana; Kubaláková, Marie; Visendi, Paul; Hayashi, Satomi; Luo, Mingcheng; Batley, Jacqueline; Edwards, David; Doležel, Jaroslav; Šimková, Hana

2016-07-01

The assembly of a reference genome sequence of bread wheat is challenging due to its specific features such as the genome size of 17 Gbp, polyploid nature and prevalence of repetitive sequences. BAC-by-BAC sequencing based on chromosomal physical maps, adopted by the International Wheat Genome Sequencing Consortium as the key strategy, reduces problems caused by the genome complexity and polyploidy, but the repeat content still hampers the sequence assembly. Availability of a high-resolution genomic map to guide sequence scaffolding and validate physical map and sequence assemblies would be highly beneficial to obtaining an accurate and complete genome sequence. Here, we chose the short arm of chromosome 7D (7DS) as a model to demonstrate for the first time that it is possible to couple chromosome flow sorting with genome mapping in nanochannel arrays and create a de novo genome map of a wheat chromosome. We constructed a high-resolution chromosome map composed of 371 contigs with an N50 of 1.3 Mb. Long DNA molecules achieved by our approach facilitated chromosome-scale analysis of repetitive sequences and revealed a ~800-kb array of tandem repeats intractable to current DNA sequencing technologies. Anchoring 7DS sequence assemblies obtained by clone-by-clone sequencing to the 7DS genome map provided a valuable tool to improve the BAC-contig physical map and validate sequence assembly on a chromosome-arm scale. Our results indicate that creating genome maps for the whole wheat genome in a chromosome-by-chromosome manner is feasible and that they will be an affordable tool to support the production of improved pseudomolecules. © 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Long-term residual dry matter mapping for monitoring California hardwood rangelands

Treesearch

Norman R. Harris; William E. Frost; Neil K. McDougald; Melvin R. George; Donald L. Nielsen

2002-01-01

Long-term residual dry matter mapping on the San Joaquin Experimental Range provides a working example of this monitoring technique for grazing management and research. Residual dry matter (RDM) is the amount of old plant material left on the ground at the beginning of a new growing season. RDM indicates the previous season’s use and can be used to describe the health...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lachiewicz, A.; Rao, K.; Aylsworth, A.

A 2-year-old boy with Martin-Bell syndrome was referred for molecular testing and found to have a large deletion of FMRI. His mother was found to have two FMR-1 alleles in the normal range for CGG repeats. DNA probes located both proximal and distal to FRAXA were used to delineate the approximation location of the deletion endpoints. Proximal to the fragile site, DXS312 (pX135) was absent but DXS98 (4D8) was present. Distal to the fragile site, DXS296 (VK21) was absent but DXS304 (U6.2) was present. Our patient does not appear to have clinical findings other than those typically associated with fragilemore » X syndrome suggesting that the deletion does not remove other contiguous genes, e.g., IDS. The deletion in this patient is larger than the patient reported by Gedeon et al., in whom approximately 2.5 megabases were estimated to be deleted. Using the physical map of Schlessinger et al., the physical extent of the deletion can be estimated to be at least 3 megabases. This patient may be useful in physical mapping of the chromosomal region near FMR-1. Continued long-term evaluation of this patient may uncover clinical findings suggestive that the deletion removes other genes near to FMR-1 or, alternatively, no findings atypical of the fragile X syndrome suggesting that no other genes lie in the deletion interval.« less

Fractional-order difference equations for physical lattices and some applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tarasov, Vasily E., E-mail: tarasov@theory.sinp.msu.ru

2015-10-15

Fractional-order operators for physical lattice models based on the Grünwald-Letnikov fractional differences are suggested. We use an approach based on the models of lattices with long-range particle interactions. The fractional-order operators of differentiation and integration on physical lattices are represented by kernels of lattice long-range interactions. In continuum limit, these discrete operators of non-integer orders give the fractional-order derivatives and integrals with respect to coordinates of the Grünwald-Letnikov types. As examples of the fractional-order difference equations for physical lattices, we give difference analogs of the fractional nonlocal Navier-Stokes equations and the fractional nonlocal Maxwell equations for lattices with long-range interactions.more » Continuum limits of these fractional-order difference equations are also suggested.« less

The Scanning Nanoprobe Beamline Nanoscopium at Synchrotron Soleil

NASA Astrophysics Data System (ADS)

Somogyi, A.; Kewish, C. M.; Polack, F.; Moreno, T.

2011-09-01

The Nanoscopium beamline at Synchrotron Soleil will offer advanced scanning-based hard x-ray imaging techniques in the 5- to 20-keV energy range, for user communities working in the earth, environmental, and life sciences. Two dedicated end stations will exploit x-ray coherence to produce images in which contrast is based on a range of physical processes. In the first experiment hutch, coherent scatter imaging techniques will produce images in which contrast arises from spatial variations in the complex refractive index, and orientation in the nanostructure of samples. In the second experiment hutch, elemental mapping will be carried out at the trace (ppm) level by scanning x-ray fluorescence, speciation mapping by XANES, and phase gradient mapping by scanning differential phase contrast imaging. The beamline aims to reach sub-micrometric, down to 30 nm, spatial resolution. This ˜155-meter-long beamline will share the straight section with a future tomography beamline by using canted undulators having 6.5-mrad separation angle. The optical design of Nanoscopium aims to reduce the effect of instabilities on the probing nanobeam by utilizing an all-horizontal geometry for the reflections of the primary beamline mirrors, which focus onto a slit, creating an over-filled secondary source. Kirkpatrick-Baez mirrors and Fresnel zone plates will be used as focusing devices in the experiment hutches. Nanoscopium is expected to commence user operation in 2013.

Look Ahead: Long-Range Learning Plans

ERIC Educational Resources Information Center

Weinstein, Margery

2010-01-01

Faced with an unsteady economy and fluctuating learning needs, planning a learning strategy designed to last longer than the next six months can be a tall order. But a long-range learning plan can provide a road map for success. In this article, four companies (KPMG LLP, CarMax, DPR Construction, and EMC Corp.) describe their learning plans, and…

Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks.

PubMed

Hanson, Jack; Paliwal, Kuldip; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi

2018-06-19

Accurate prediction of a protein contact map depends greatly on capturing as much contextual information as possible from surrounding residues for a target residue pair. Recently, ultra-deep residual convolutional networks were found to be state-of-the-art in the latest Critical Assessment of Structure Prediction techniques (CASP12, (Schaarschmidt et al., 2018)) for protein contact map prediction by attempting to provide a protein-wide context at each residue pair. Recurrent neural networks have seen great success in recent protein residue classification problems due to their ability to propagate information through long protein sequences, especially Long Short-Term Memory (LSTM) cells. Here we propose a novel protein contact map prediction method by stacking residual convolutional networks with two-dimensional residual bidirectional recurrent LSTM networks, and using both one-dimensional sequence-based and two-dimensional evolutionary coupling-based information. We show that the proposed method achieves a robust performance over validation and independent test sets with the Area Under the receiver operating characteristic Curve (AUC)>0.95 in all tests. When compared to several state-of-the-art methods for independent testing of 228 proteins, the method yields an AUC value of 0.958, whereas the next-best method obtains an AUC of 0.909. More importantly, the improvement is over contacts at all sequence-position separations. Specifically, a 8.95%, 5.65% and 2.84% increase in precision were observed for the top L∕10 predictions over the next best for short, medium and long-range contacts, respectively. This confirms the usefulness of ResNets to congregate the short-range relations and 2D-BRLSTM to propagate the long-range dependencies throughout the entire protein contact map 'image'. SPOT-Contact server url: http://sparks-lab.org/jack/server/SPOT-Contact/. Supplementary data is available at Bioinformatics online.

Geology of the central and northern parts of the Western Cascade Range in Oregon

USGS Publications Warehouse

Peck, Dallas L.; Griggs, Allan B.; Schlicker, Herbert G.; Wells, Francis G.; Dole, Hollis M.

1964-01-01

This report pt·esents a description of the stratigraphy, structure, and petrology of the volcanic rocks of the central and northern parts of the Western Cascade Range of Oregon. The study is a part of a long-range cooperative program between the U.S. Geological Survey and the Oregon State Department of Geology and Mineral Industries to prepare a geologic map of Oregon. The map area, about 7,500 square miles, lies in the densely forested western slope of the Cascade Range. It is bounded approximately by lat 43° N. and lat 45°30' N. on the south and north, the crest of the range on the east, and long 123° W. and the edge of the Willamette Valley on the west. The geology, which was mapped by reconnaissance methods, is chiefly based on examination of rock exposures along roads. The Cascade Range in Oregon comprises two physiographic divisions: the Western Cascade Range, which includes a wide, deeply dissected belt of volcanic formations making up the western slope of the range, and the High Cascade Range, which includes chiefly younger cones and lava flows forming the nearly undissected crest of the range. The volcanic rocks of the Western Cascade Range are deformed and partially altered flows and pyroclastic rocks that range in age from late Eocene t·o lute Miocene, as determined chiefly from fossil plants from more than 50 localities. These volcanic rocks overlie or interfinger westward with marine sedimentary rocks, and in the southwestern part of the map area they overlie pre-Tertiary plutonic and metamorphic rocks of the Klamath Mountains.

Forest and Range Inventory and Mapping

NASA Technical Reports Server (NTRS)

Aldrich, R. C.

1971-01-01

The state of the art in remote sensing for forest and range inventories and mapping has been discussed. There remains a long way to go before some of these techniques can be used on an operational basis. By the time that the Earth Resources Technology Satellite and Skylab space missions are flown, it should be possible to tell what kind and what quality of information can be extracted from remote sensors and how it can be used for surveys of forest and range resources.

Genome organization and long-range regulation of gene expression by enhancers.

PubMed

Smallwood, Andrea; Ren, Bing

2013-06-01

It is now well accepted that cell-type specific gene regulation is under the purview of enhancers. Great strides have been made recently to characterize and identify enhancers both genetically and epigenetically for multiple cell types and species, but efforts have just begun to link enhancers to their target promoters. Mapping these interactions and understanding how the 3D landscape of the genome constrains such interactions is fundamental to our understanding of mammalian gene regulation. Here, we review recent progress in mapping long-range regulatory interactions in mammalian genomes, focusing on transcriptional enhancers and chromatin organization principles. Copyright © 2013. Published by Elsevier Ltd.

Modelling and mapping long-term risks due to reactive nitrogen effects: an overview of LRTAP convention activities.

PubMed

Spranger, T; Hettelingh, J-P; Slootweg, J; Posch, M

2008-08-01

Long-range transboundary air pollution has caused severe environmental effects in Europe. European air pollution abatement policy, in the framework of the UNECE Convention on Long-range Transboundary Air Pollution (LRTAP Convention) and the European Union Clean Air for Europe (CAFE) programme, has used critical loads and their exceedances by atmospheric deposition to design emission abatement targets and strategies. The LRTAP Convention International Cooperative Programme on Modelling and Mapping Critical Loads and Levels and Air Pollution Effects, Risks and Trends (ICP M&M) generates European critical loads datasets to enable this work. Developing dynamic nitrogen flux models and using them for a prognosis and assessment of nitrogen effects remains a challenge. Further research is needed on links between nitrogen deposition effects, climate change, and biodiversity.

Full-Sky Maps of the VHF Radio Sky with the Owens Valley Radio Observatory Long Wavelength Array

NASA Astrophysics Data System (ADS)

Eastwood, Michael W.; Hallinan, Gregg

2018-05-01

21-cm cosmology is a powerful new probe of the intergalactic medium at redshifts 20 >~ z >~ 6 corresponding to the Cosmic Dawn and Epoch of Reionization. Current observations of the highly-redshifted 21-cm transition are limited by the dynamic range they can achieve against foreground sources of low-frequency (<200 MHz) of radio emission. We used the Owens Valley Radio Observatory Long Wavelength Array (OVRO-LWA) to generate a series of new modern high-fidelity sky maps that capture emission on angular scales ranging from tens of degrees to ~15 arcmin, and frequencies between 36 and 73 MHz. These sky maps were generated from the application of Tikhonov-regularized m-mode analysis imaging, which is a new interferometric imaging technique that is uniquely suited for low-frequency, wide-field, drift-scanning interferometers.

Mapping the structure of animal behavior

NASA Astrophysics Data System (ADS)

Berman, Gordon; Choi, Daniel; Bialek, William; Shaevitz, Joshua

2014-03-01

Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can be described in terms of a small set of stereotyped motifs. Here we introduce a method for mapping the behavioral space of organisms, relying only upon the underlying structure of postural movement data to organize and classify behaviors. Applying our method to movies of size closely-related species of freely-behaving fruit flies, we find a wide variety of non-stereotyped and stereo-typed behaviors, spanning a wide range of time scales. We observe subtle behavioral differences between these species, identifying the some of the effects of phylogenic history on behavior. Moreover, we find that the transitions between the observed behaviors display a hierarchical syntax, with similar behaviors likely to transition between each other, but with a long time scale of memory. These results suggest potential mechanisms for the evolution of behavior and for the neural control of movements.

The Specola Vaticana: Astronomy at the Vatican

NASA Astrophysics Data System (ADS)

Consolmagno, Guy; Corbally, Christopher

2013-01-01

The Vatican is an independent nation, with its own national astronomical observatory, the Specola Vaticana (Vatican Observatory). Astronomy has been supported at the Vatican since the 1582 reform of the calendar; the present-day Observatory has been in operation since 1891. The work of the observatory is divided between two sites, one in the papal summer gardens south of Rome, Italy, and the other affiliated with the Steward Observatory at the University of Arizona, in Tucson, Arizona, USA. Research undertaken by current staff members ranges from cosmology and the study of galactic evolution to meteoritics and meteors. Given the stable funding provided by the Vatican, the Observatory has specialized in long-term mapping and cataloguing projects that would be difficult to mount under a traditional three-year funding cycle. These have included participation in the Carte du Ciel photographic map of the sky; the atlases of spectra produced by its Spectrochemical Laboratory; surveys of star clusters and peculiar stars; and the cataloguing of meteorite physical properties.

Beaked Whale Habitat Characterization and Prediction

DTIC Science & Technology

2005-09-30

trying to develop a better understanding of beaked whale distribution. For long - range planning, the static habitat prediction maps provide a broad... whale presence ranged from 79.3% to 100.0% for the static models and 85.7% to 94.5% for the dynamic models. Beaked whale habitat prediction has been...submerged for such long periods of time that there is a high probability that they will never surface within the visual range of observers aboard a

Planck 2015 results. XXII. A map of the thermal Sunyaev-Zeldovich effect

NASA Astrophysics Data System (ADS)

Planck Collaboration; Aghanim, N.; Arnaud, M.; Ashdown, M.; Aumont, J.; Baccigalupi, C.; Banday, A. J.; Barreiro, R. B.; Bartlett, J. G.; Bartolo, N.; Battaner, E.; Battye, R.; Benabed, K.; Benoît, A.; Benoit-Lévy, A.; Bernard, J.-P.; Bersanelli, M.; Bielewicz, P.; Bock, J. J.; Bonaldi, A.; Bonavera, L.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Burigana, C.; Butler, R. C.; Calabrese, E.; Cardoso, J.-F.; Catalano, A.; Challinor, A.; Chiang, H. C.; Christensen, P. R.; Churazov, E.; Clements, D. L.; Colombo, L. P. L.; Combet, C.; Comis, B.; Coulais, A.; Crill, B. P.; Curto, A.; Cuttaia, F.; Danese, L.; Davies, R. D.; Davis, R. J.; de Bernardis, P.; de Rosa, A.; de Zotti, G.; Delabrouille, J.; Désert, F.-X.; Dickinson, C.; Diego, J. M.; Dolag, K.; Dole, H.; Donzelli, S.; Doré, O.; Douspis, M.; Ducout, A.; Dupac, X.; Efstathiou, G.; Elsner, F.; Enßlin, T. A.; Eriksen, H. K.; Fergusson, J.; Finelli, F.; Forni, O.; Frailis, M.; Fraisse, A. A.; Franceschi, E.; Frejsel, A.; Galeotta, S.; Galli, S.; Ganga, K.; Génova-Santos, R. T.; Giard, M.; González-Nuevo, J.; Górski, K. M.; Gregorio, A.; Gruppuso, A.; Gudmundsson, J. E.; Hansen, F. K.; Harrison, D. L.; Henrot-Versillé, S.; Hernández-Monteagudo, C.; Herranz, D.; Hildebrandt, S. R.; Hivon, E.; Holmes, W. A.; Hornstrup, A.; Huffenberger, K. M.; Hurier, G.; Jaffe, A. H.; Jones, W. C.; Juvela, M.; Keihänen, E.; Keskitalo, R.; Kneissl, R.; Knoche, J.; Kunz, M.; Kurki-Suonio, H.; Lacasa, F.; Lagache, G.; Lähteenmäki, A.; Lamarre, J.-M.; Lasenby, A.; Lattanzi, M.; Leonardi, R.; Lesgourgues, J.; Levrier, F.; Liguori, M.; Lilje, P. B.; Linden-Vørnle, M.; López-Caniego, M.; Macías-Pérez, J. F.; Maffei, B.; Maggio, G.; Maino, D.; Mandolesi, N.; Mangilli, A.; Maris, M.; Martin, P. G.; Martínez-González, E.; Masi, S.; Matarrese, S.; Melchiorri, A.; Melin, J.-B.; Migliaccio, M.; Miville-Deschênes, M.-A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Munshi, D.; Murphy, J. A.; Naselsky, P.; Nati, F.; Natoli, P.; Noviello, F.; Novikov, D.; Novikov, I.; Paci, F.; Pagano, L.; Pajot, F.; Paoletti, D.; Pasian, F.; Patanchon, G.; Perdereau, O.; Perotto, L.; Pettorino, V.; Piacentini, F.; Piat, M.; Pierpaoli, E.; Pietrobon, D.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Ponthieu, N.; Pratt, G. W.; Prunet, S.; Puget, J.-L.; Rachen, J. P.; Reinecke, M.; Remazeilles, M.; Renault, C.; Renzi, A.; Ristorcelli, I.; Rocha, G.; Rossetti, M.; Roudier, G.; Rubiño-Martín, J. A.; Rusholme, B.; Sandri, M.; Santos, D.; Sauvé, A.; Savelainen, M.; Savini, G.; Scott, D.; Spencer, L. D.; Stolyarov, V.; Stompor, R.; Sunyaev, R.; Sutton, D.; Suur-Uski, A.-S.; Sygnet, J.-F.; Tauber, J. A.; Terenzi, L.; Toffolatti, L.; Tomasi, M.; Tramonte, D.; Tristram, M.; Tucci, M.; Tuovinen, J.; Valenziano, L.; Valiviita, J.; Van Tent, B.; Vielva, P.; Villa, F.; Wade, L. A.; Wandelt, B. D.; Wehus, I. K.; Yvon, D.; Zacchei, A.; Zonca, A.

2016-09-01

We have constructed all-sky Compton parameters maps, y-maps, of the thermal Sunyaev-Zeldovich (tSZ) effect by applying specifically tailored component separation algorithms to the 30 to 857 GHz frequency channel maps from the Planck satellite. These reconstructed y-maps are delivered as part of the Planck 2015 release. The y-maps are characterized in terms of noise properties and residual foreground contamination, mainly thermal dust emission at large angular scales, and cosmic infrared background and extragalactic point sources at small angular scales. Specific masks are defined to minimize foreground residuals and systematics. Using these masks, we compute the y-map angular power spectrum and higher order statistics. From these we conclude that the y-map is dominated by tSZ signal in the multipole range, 20 <ℓ< 600. We compare the measured tSZ power spectrum and higher order statistics to various physically motivated models and discuss the implications of our results in terms of cluster physics and cosmology.

Long-range correlations and burstiness in written texts: Universal and language-specific aspects

NASA Astrophysics Data System (ADS)

Constantoudis, Vassilios; Kalimeri, Maria; Diakonos, Fotis; Karamanos, Konstantinos; Papadimitriou, Constantinos; Chatzigeorgiou, Manolis; Papageorgiou, Harris

2016-08-01

Recently, methods from the statistical physics of complex systems have been applied successfully to identify universal features in the long-range correlations (LRCs) of written texts. However, in real texts, these universal features are being intermingled with language-specific influences. This paper aims at the characterization and further understanding of the interplay between universal and language-specific effects on the LRCs in texts. To this end, we apply the language-sensitive mapping of written texts to word-length series (wls) and analyse large parallel (of same content) corpora from 10 languages classified to four families (Romanic, Germanic, Greek and Uralic). The autocorrelation functions of the wls reveal tiny but persistent LRCs decaying at large scales following a power-law with a language-independent exponent ˜0.60-0.65. The impact of language is displayed in the amplitude of correlations where a relative standard deviation >40% among the analyzed languages is observed. The classification to language families seems to play a significant role since, the Finnish and Germanic languages exhibit more correlations than the Greek and Roman families. To reveal the origins of the LRCs, we focus on the long words and perform burst and correlation analysis in their positions along the corpora. We find that the universal features are linked more to the correlations of the inter-long word distances while the language-specific aspects are related more to their distributions.

Modeling forest biomass and growth: Coupling long-term inventory and LiDAR data

Treesearch

Chad Babcock; Andrew O. Finley; Bruce D. Cook; Aaron Weiskittel; Christopher W. Woodall

2016-01-01

Combining spatially-explicit long-term forest inventory and remotely sensed information from Light Detection and Ranging (LiDAR) datasets through statistical models can be a powerful tool for predicting and mapping above-ground biomass (AGB) at a range of geographic scales. We present and examine a novel modeling approach to improve prediction of AGB and estimate AGB...

R2C: improving ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter.

PubMed

Yang, Jing; Jin, Qi-Yu; Zhang, Biao; Shen, Hong-Bin

2016-08-15

Inter-residue contacts in proteins dictate the topology of protein structures. They are crucial for protein folding and structural stability. Accurate prediction of residue contacts especially for long-range contacts is important to the quality of ab inito structure modeling since they can enforce strong restraints to structure assembly. In this paper, we present a new Residue-Residue Contact predictor called R2C that combines machine learning-based and correlated mutation analysis-based methods, together with a two-dimensional Gaussian noise filter to enhance the long-range residue contact prediction. Our results show that the outputs from the machine learning-based method are concentrated with better performance on short-range contacts; while for correlated mutation analysis-based approach, the predictions are widespread with higher accuracy on long-range contacts. An effective query-driven dynamic fusion strategy proposed here takes full advantages of the two different methods, resulting in an impressive overall accuracy improvement. We also show that the contact map directly from the prediction model contains the interesting Gaussian noise, which has not been discovered before. Different from recent studies that tried to further enhance the quality of contact map by removing its transitive noise, we designed a new two-dimensional Gaussian noise filter, which was especially helpful for reinforcing the long-range residue contact prediction. Tested on recent CASP10/11 datasets, the overall top L/5 accuracy of our final R2C predictor is 17.6%/15.5% higher than the pure machine learning-based method and 7.8%/8.3% higher than the correlated mutation analysis-based approach for the long-range residue contact prediction. http://www.csbio.sjtu.edu.cn/bioinf/R2C/Contact:hbshen@sjtu.edu.cn Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

A Preliminary Evaluation of the GFS Physics in the Navy Global Environmental Model

NASA Astrophysics Data System (ADS)

Liu, M.; Langland, R.; Martini, M.; Viner, K.

2017-12-01

Global extended long-range weather forecast is a goal in the near future at Navy's Fleet Numerical Meteorology and Oceanography Center (FNMOC). In an effort to improve the performance of the Navy Global Environmental Model (NAVGEM) operated at FNMOC, and to gain more understanding of the impact of atmospheric physics in the long-range forecast, the physics package of the Global Forecast System (GFS) of the National Centers for Environmental Prediction is being evaluated in the framework of NAVGEM. That is GFS physics being transported by NAVGEM Semi-Lagrangian Semi-Implicit advection, and update-cycled by the 4D-variational data assimilation along with the assimilated land surface data of NASA's Land Information System. The output of free long runs of 10-day GFS physics forecast in a summer and a winter season are evaluated through the comparisons with the output of NAVGEM physics long forecast, and through the validations with observations and with the European Center's analyses data. It is found that the GFS physics is able to effectively reduce some of the modeling biases of NAVGEM, especially wind speed of the troposphere and land surface temperature that is an important surface boundary condition. The bias corrections increase with forecast leads, reaching maximum at 240 hours. To further understand the relative roles of physics and dynamics in extended long-range forecast, the tendencies of physics components and advection are also calculated and analyzed to compare their forces of magnitudes in the integration of winds, temperature, and moisture. The comparisons reveal the strength and limitation of GFS physics in the overall improvement of NAVGEM prediction system.

Physical map of the Brucella melitensis 16 M chromosome.

PubMed Central

Allardet-Servent, A; Carles-Nurit, M J; Bourg, G; Michaux, S; Ramuz, M

1991-01-01

We present the first restriction map of the Brucella melitensis 16 M chromosome obtained by Southern blot hybridization of SpeI, XhoI, and XbaI fragments separated by pulsed-field gel electrophoresis. All restriction fragments (a total of 113) were mapped into an open circle. The main difficulty in mapping involved the exceedingly high number of restriction fragments, as was expected considering the 59% G + C content of the Brucella genome. Several cloned genes were placed on this map, especially rRNA operons which are repeated three times. The size of the B. melitensis chromosome, estimated as 2,600 kb long in a previous study, appeared longer (3,130 kb) by restriction mapping. This restriction map is an initial approach to achieve a genetic map of the Brucella chromosome. Images PMID:2007548

Participatory Mapping for Flood Disaster Zoning based on World View-2 Data in Long Beluah, North Kalimantan Province

NASA Astrophysics Data System (ADS)

Sudaryatno; Awanda, Disyacitta; Eka Pratiwi, Sufiyana

2017-12-01

Flood is one of the most frequent disasters in Indonesia. These conditions cause the necessary efforts to reduce the impact of these hazards. To reduce the impact of these hazards is to understand spatially the impact of previous disasters. Participatory mapping is one of the solutions to be able to assist in reducing the impact of flood disaster by conducting flood zoning so it can be known the range of the flood. The community plays an important role in participatory mapping because the experiences and mental maps of the community are the main sources of information used. North Kalimantan Province has a very large watershed area that is in Kayan watershed, there are several villages, one of them is Long Beluah Village. Kayan watershed has a flood problem annually that affects most of the areas including the Long Beluah Village. This study aims to map the zoning of floods in the village of Long Beluah in a participatory manner using remote sensing World View-2 data within community, so that people also understand the conditions they face. The method for achieving that goal is participatory mapping which means community involvement as well as the ability of community mental maps that will make an important contribution in this research. The results of this study show that flood zoning can be mapped based on experience and community mental maps that the greatest floods in February 2015 inundated most of the community settlements in Long Beluah Village. There are few places from the uninhabited areas of settlements and serve as refugee camps. The participatory zonation map of the participatory floods is quite appropriate with the situation at the time of the greatest flood that hit the village of Long Beluah, so that through the map can be drawn up plans to reduce the impact of such disasters such as evacuation routes and a more strategic refuge point.

Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.

PubMed

Staton, Margaret; Zhebentyayeva, Tetyana; Olukolu, Bode; Fang, Guang Chen; Nelson, Dana; Carlson, John E; Abbott, Albert G

2015-10-05

Chinese chestnut (Castanea mollissima) has emerged as a model species for the Fagaceae family with extensive genomic resources including a physical map, a dense genetic map and quantitative trait loci (QTLs) for chestnut blight resistance. These resources enable comparative genomics analyses relative to model plants. We assessed the degree of conservation between the chestnut genome and other well annotated and assembled plant genomic sequences, focusing on the QTL regions of most interest to the chestnut breeding community. The integrated physical and genetic map of Chinese chestnut has been improved to now include 858 shared sequence-based markers. The utility of the integrated map has also been improved through the addition of 42,970 BAC (bacterial artificial chromosome) end sequences spanning over 26 million bases of the estimated 800 Mb chestnut genome. Synteny between chestnut and ten model plant species was conducted on a macro-syntenic scale using sequences from both individual probes and BAC end sequences across the chestnut physical map. Blocks of synteny with chestnut were found in all ten reference species, with the percent of the chestnut physical map that could be aligned ranging from 10 to 39 %. The integrated genetic and physical map was utilized to identify BACs that spanned the three previously identified QTL regions conferring blight resistance. The clones were pooled and sequenced, yielding 396 sequence scaffolds covering 13.9 Mbp. Comparative genomic analysis on a microsytenic scale, using the QTL-associated genomic sequence, identified synteny from chestnut to other plant genomes ranging from 5.4 to 12.9 % of the genome sequences aligning. On both the macro- and micro-synteny levels, the peach, grape and poplar genomes were found to be the most structurally conserved with chestnut. Interestingly, these results did not strictly follow the expectation that decreased phylogenetic distance would correspond to increased levels of genome preservation, but rather suggest the additional influence of life-history traits on preservation of synteny. The regions of synteny that were detected provide an important tool for defining and cataloging genes in the QTL regions for advancing chestnut blight resistance research.

Fractal landscape analysis of DNA walks

NASA Technical Reports Server (NTRS)

Peng, C. K.; Buldyrev, S. V.; Goldberger, A. L.; Havlin, S.; Sciortino, F.; Simons, M.; Stanley, H. E.

1992-01-01

By mapping nucleotide sequences onto a "DNA walk", we uncovered remarkably long-range power law correlations [Nature 356 (1992) 168] that imply a new scale invariant property of DNA. We found such long-range correlations in intron-containing genes and in non-transcribed regulatory DNA sequences, but not in cDNA sequences or intron-less genes. In this paper, we present more explicit evidences to support our findings.

The Distributed Air Wing

DTIC Science & Technology

2014-06-01

Cruise Missile LCS Littoral Combat Ship LEO Low Earth Orbit LER Loss-Exchange-Ration LHA Landing Helicopter Assault LIDAR Laser Imaging Detection and...Ranging LOC Lines of Communication LP Linear Programming LRASM Long Range Anti-Ship Missile LT Long Ton MANA Map-Aware Non-uniform Automata ME...enemy’s spy satellites. Based on open source information, China currently has 25 satellites operating in Low Earth Orbit ( LEO ), each operates at an

A draft physical map of a D-genome cotton species (Gossypium raimondii)

PubMed Central

2010-01-01

Background Genetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing. Cultivated tetraploid cottons, Gossypium hirsutum and G. barbadense, share a common ancestor formed by a merger of the A and D genomes about 1-2 million years ago. Toward the long-term goal of characterizing the spectrum of diversity among cotton genomes, the worldwide cotton community has prioritized the D genome progenitor Gossypium raimondii for complete sequencing. Results A whole genome physical map of G. raimondii, the putative D genome ancestral species of tetraploid cottons was assembled, integrating genetically-anchored overgo hybridization probes, agarose based fingerprints and 'high information content fingerprinting' (HICF). A total of 13,662 BAC-end sequences and 2,828 DNA probes were used in genetically anchoring 1585 contigs to a cotton consensus genetic map, and 370 and 438 contigs, respectively to Arabidopsis thaliana (AT) and Vitis vinifera (VV) whole genome sequences. Conclusion Several lines of evidence suggest that the G. raimondii genome is comprised of two qualitatively different components. Much of the gene rich component is aligned to the Arabidopsis and Vitis vinifera genomes and shows promise for utilizing translational genomic approaches in understanding this important genome and its resident genes. The integrated genetic-physical map is of value both in assembling and validating a planned reference sequence. PMID:20569427

Filtering Non-Linear Transfer Functions on Surfaces.

PubMed

Heitz, Eric; Nowrouzezahrai, Derek; Poulin, Pierre; Neyret, Fabrice

2014-07-01

Applying non-linear transfer functions and look-up tables to procedural functions (such as noise), surface attributes, or even surface geometry are common strategies used to enhance visual detail. Their simplicity and ability to mimic a wide range of realistic appearances have led to their adoption in many rendering problems. As with any textured or geometric detail, proper filtering is needed to reduce aliasing when viewed across a range of distances, but accurate and efficient transfer function filtering remains an open problem for several reasons: transfer functions are complex and non-linear, especially when mapped through procedural noise and/or geometry-dependent functions, and the effects of perspective and masking further complicate the filtering over a pixel's footprint. We accurately solve this problem by computing and sampling from specialized filtering distributions on the fly, yielding very fast performance. We investigate the case where the transfer function to filter is a color map applied to (macroscale) surface textures (like noise), as well as color maps applied according to (microscale) geometric details. We introduce a novel representation of a (potentially modulated) color map's distribution over pixel footprints using Gaussian statistics and, in the more complex case of high-resolution color mapped microsurface details, our filtering is view- and light-dependent, and capable of correctly handling masking and occlusion effects. Our approach can be generalized to filter other physical-based rendering quantities. We propose an application to shading with irradiance environment maps over large terrains. Our framework is also compatible with the case of transfer functions used to warp surface geometry, as long as the transformations can be represented with Gaussian statistics, leading to proper view- and light-dependent filtering results. Our results match ground truth and our solution is well suited to real-time applications, requires only a few lines of shader code (provided in supplemental material, which can be found on the Computer Society Digital Library at http://doi.ieeecomputersociety.org/10.1109/TVCG.2013.102), is high performance, and has a negligible memory footprint.

Fish assemblage composition and mapped mesohabitat features over a range of streamflows in the Middle Rio Grande, New Mexico, winter 2011-12, summer 2012

USGS Publications Warehouse

Pearson, Daniel K.; Braun, Christopher L.; Moring, J. Bruce

2016-01-21

This report documents differences in the mapped spatial extents and physical characteristics of in-channel fish habitat evaluated at the mesohabitat scale during winter 2011–12 (moderate streamflow) and summer 2012 (low streamflow) at 15 sites on the Middle Rio Grande in New Mexico starting about 3 kilometers downstream from Cochiti Dam and ending about 40 kilometers upstream from Elephant Butte Reservoir. The results of mesohabitat mapping, physical characterization, and fish assemblage surveys are summarized from the data that were collected. The report also presents general comparisons of physical mesohabitat data, such as wetted area and substrate type, and biological mesohabitat data, which included fish assemblage composition, species richness, Rio Grande silvery minnow relative abundance, and Rio Grande silvery minnow catch per unit effort.

Memory and long-range correlations in chess games

NASA Astrophysics Data System (ADS)

Schaigorodsky, Ana L.; Perotti, Juan I.; Billoni, Orlando V.

2014-01-01

In this paper we report the existence of long-range memory in the opening moves of a chronologically ordered set of chess games using an extensive chess database. We used two mapping rules to build discrete time series and analyzed them using two methods for detecting long-range correlations; rescaled range analysis and detrended fluctuation analysis. We found that long-range memory is related to the level of the players. When the database is filtered according to player levels we found differences in the persistence of the different subsets. For high level players, correlations are stronger at long time scales; whereas in intermediate and low level players they reach the maximum value at shorter time scales. This can be interpreted as a signature of the different strategies used by players with different levels of expertise. These results are robust against the assignation rules and the method employed in the analysis of the time series.

Investigate feasibility of using ground penetrating radar in QC/QA of rubblization projects.

DOT National Transportation Integrated Search

2011-07-01

This study investigated if Ground Penetrating Radar can offer a suitable technology for mapping the physical condition of fractured slab rapidly, particularly under the steel reinforcement, without disturbing the fractured layer. A 4000 long compo...

Enabling Autonomous Navigation for Affordable Scooters.

PubMed

Liu, Kaikai; Mulky, Rajathswaroop

2018-06-05

Despite the technical success of existing assistive technologies, for example, electric wheelchairs and scooters, they are still far from effective enough in helping those in need navigate to their destinations in a hassle-free manner. In this paper, we propose to improve the safety and autonomy of navigation by designing a cutting-edge autonomous scooter, thus allowing people with mobility challenges to ambulate independently and safely in possibly unfamiliar surroundings. We focus on indoor navigation scenarios for the autonomous scooter where the current location, maps, and nearby obstacles are unknown. To achieve semi-LiDAR functionality, we leverage the gyros-based pose data to compensate the laser motion in real time and create synthetic mapping of simple environments with regular shapes and deep hallways. Laser range finders are suitable for long ranges with limited resolution. Stereo vision, on the other hand, provides 3D structural data of nearby complex objects. To achieve simultaneous fine-grained resolution and long range coverage in the mapping of cluttered and complex environments, we dynamically fuse the measurements from the stereo vision camera system, the synthetic laser scanner, and the LiDAR. We propose solutions to self-correct errors in data fusion and create a hybrid map to assist the scooter in achieving collision-free navigation in an indoor environment.

DNA confinement in nanochannels: physics and biological applications

NASA Astrophysics Data System (ADS)

Reisner, Walter; Pedersen, Jonas N.; Austin, Robert H.

2012-10-01

DNA is the central storage molecule of genetic information in the cell, and reading that information is a central problem in biology. While sequencing technology has made enormous advances over the past decade, there is growing interest in platforms that can readout genetic information directly from long single DNA molecules, with the ultimate goal of single-cell, single-genome analysis. Such a capability would obviate the need for ensemble averaging over heterogeneous cellular populations and eliminate uncertainties introduced by cloning and molecular amplification steps (thus enabling direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement—including the effect of varying ionic strength—and then discuss recent applications of these systems to genomic mapping. Apart from the intense biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100 µm range.

DNA confinement in nanochannels: physics and biological applications.

PubMed

Reisner, Walter; Pedersen, Jonas N; Austin, Robert H

2012-10-01

DNA is the central storage molecule of genetic information in the cell, and reading that information is a central problem in biology. While sequencing technology has made enormous advances over the past decade, there is growing interest in platforms that can readout genetic information directly from long single DNA molecules, with the ultimate goal of single-cell, single-genome analysis. Such a capability would obviate the need for ensemble averaging over heterogeneous cellular populations and eliminate uncertainties introduced by cloning and molecular amplification steps (thus enabling direct assessment of the genome in its native state). In this review, we will discuss how the information contained in genomic-length single DNA molecules can be accessed via physical confinement in nanochannels. Due to self-avoidance interactions, DNA molecules will stretch out when confined in nanochannels, creating a linear unscrolling of the genome along the channel for analysis. We will first review the fundamental physics of DNA nanochannel confinement--including the effect of varying ionic strength--and then discuss recent applications of these systems to genomic mapping. Apart from the intense biological interest in extracting linear sequence information from elongated DNA molecules, from a physics view these systems are fascinating as they enable probing of single-molecule conformation in environments with dimensions that intersect key physical length-scales in the 1 nm to 100 µm range.

Refined mapping and YAC contig construction of the X-linked cleft palate and ankyloglossia locus (CPX) including the proximal X-Y homology breakpoint within Xq21.3

DOE Office of Scientific and Technical Information (OSTI.GOV)

Forbes, S.A.; Brennan, L.; Richardson, M.

1996-01-01

The gene for X-linked cleft palate (CPX) has previously been mapped in an Icelandic kindred between the unordered proximal markers DXS1002/DXS349/DXS95 and the distal marker DXYS1X, which maps to the proximal end of the X-Y homology region in Xq21.3. Using six sequence-tagged sites (STSs) within the region, a total of 91 yeast artificial chromosome (YAC) clones were isolated and overlapped in a single contig that spans approximately 3.1 Mb between DXS1002 and DXYS1X. The order of microsatellite and STS markers in this was established as DXS1002-DXS1168-DXS349-DXS95-DXS364-DXS1196-DXS472-DXS1217-DXYS1X. A long-range restriction map of this region was created using eight nonchimeric, overlapping YACmore » clones. Analysis of newly positioned polymorphic markers in recombinant individuals from the Icelandic family has enabled us to identify DXS1196 and DXS1217 as the flanking markers for CPX. The maximum physical distance containing the CPX gene has been estimated to be 2.0 Mb, which is spanned by a minimum set of five nonchimeric YAC clones. In addition, YAC end clone and STS analyses have pinpointed the location of the proximal boundary of the X-Y homology region within the map. 40 refs., 2 figs., 2 tabs.« less

Proceedings of the NASA Workshop on Registration and Rectification

NASA Technical Reports Server (NTRS)

Bryant, N. A. (Editor)

1982-01-01

Issues associated with the registration and rectification of remotely sensed data. Near and long range applications research tasks and some medium range technology augmentation research areas are recommended. Image sharpness, feature extraction, inter-image mapping, error analysis, and verification methods are addressed.

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

PubMed

Tárraga, Joaquín; Arnau, Vicente; Martínez, Héctor; Moreno, Raul; Cazorla, Diego; Salavert-Torres, José; Blanquer-Espert, Ignacio; Dopazo, Joaquín; Medina, Ignacio

2014-12-01

HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented here is faster (over 20× for long reads) and more sensitive (over 98% in a wide range of read lengths) than the current state-of-the-art mappers. HPG Aligner is not only an optimal alternative for current sequencers but also the only solution available to cope with longer reads and growing throughputs produced by forthcoming sequencing technologies. https://github.com/opencb/hpg-aligner. © The Author 2014. Published by Oxford University Press.

Proposed satellite laser ranging and very long baseline interferometry sites for crustal dynamics investigations

NASA Technical Reports Server (NTRS)

Lowman, P. D.; Allenby, R. J.; Frey, H. V.

1979-01-01

Recommendations are presented for a global network of 125 sites for geodetic measurements by satellite laser ranging and very long baseline interferometry. The sites were proposed on the basis of existing facilities and scientific value for investigation of crustal dynamics as related to earthquake hazards. Tectonic problems are discussed for North America peripheral regions and for the world. The sites are presented in tables and maps, with bibliographic references.

Pluto in Extended Color

NASA Image and Video Library

2015-09-24

This cylindrical projection map of Pluto, in enhanced, extended color, is the most detailed color map of Pluto ever made by NASA New Horizons. It uses recently returned color imagery from the New Horizons Ralph camera, which is draped onto a base map of images from the NASA's spacecraft's Long Range Reconnaissance Imager (LORRI). The map can be zoomed in to reveal exquisite detail with high scientific value. Color variations have been enhanced to bring out subtle differences. Colors used in this map are the blue, red, and near-infrared filter channels of the Ralph instrument. http://photojournal.jpl.nasa.gov/catalog/PIA19956

Flow induction by pressure forces

NASA Technical Reports Server (NTRS)

Garris, C. A.; Toh, K. H.; Amin, S.

1992-01-01

A dual experimental/computational approach to the fluid mechanics of complex interactions that take place in a rotary-jet ejector is presented. The long-range goal is to perform both detailed flow mapping and finite element computational analysis. The described work represents an initial finding on the experimental mapping program. Test results on the hubless rotary-jet are discussed.

Ranges of North American breeding birds: visualizing long-term population changes in North American breeding birds

USGS Publications Warehouse

Price, Jeff

1995-01-01

These maps show changes in the distribution and abundance patterns of some North American birds for the last 20 years. For each species there are four maps, each representing the average distribution and abundance pattern over the five-year periods 1970-1974, 1975-1979, 1980-1984, and 1985-1989. The maps are based on data collected by the USFWS/CWS Breeding Bird Survey (BBS). Only BBS routes that were run at least once during each of the five-year periods were used (about 1300 routes). The maps were created in the software package Surfer using a kriging technique to interpolate mean relative abundances for areas where no routes were run. On each map, a portion of northeast Canada was blanked out because there were not enough routes to allow for adequate interpolation. All of the maps in this presentation use the same color scale (shown below). The minimum value mapped was 0.5 birds per route, which represents the edge of the species range.

Laser-ranging long-baseline differential atom interferometers for space

NASA Astrophysics Data System (ADS)

Chiow, Sheng-wey; Williams, Jason; Yu, Nan

2015-12-01

High-sensitivity differential atom interferometers (AIs) are promising for precision measurements in science frontiers in space, including gravity-field mapping for Earth science studies and gravitational wave detection. Difficulties associated with implementing long-baseline differential AIs have previously included the need for a high optical power, large differential Doppler shifts, and narrow dynamic range. We propose a configuration of twin AIs connected by a laser-ranging interferometer (LRI-AI) to provide precise information of the displacements between the two AI reference mirrors and also to phase-lock the two independent interferometer lasers over long distances, thereby drastically improving the practical feasibility of long-baseline differential AI measurements. We show that a properly implemented LRI-AI can achieve equivalent functionality to the conventional differential AI measurement configuration.

Long-term changes in physical capacity after colorectal cancer treatment.

PubMed

Hamaker, Marije E; Prins, Meike C; Schiphorst, Anandi H; van Tuyl, Sebastiaan A C; Pronk, Apollo; van den Bos, Frederiek

2015-03-01

Older patients with colorectal cancer are faced with the dilemma of choosing between the short-term risks of treatment and the long-term risks of insufficiently treated disease. In addition to treatment-related morbidity and mortality, patients may suffer from loss of physical capacity. The purpose of this review was to gather all available evidence regarding long-term changes in physical functioning and role functioning after colorectal cancer treatment, by performing a systematic Medline and Embase search. This search yielded 27 publications from 23 studies. In 16 studies addressing physical functioning after rectal cancer treatment, a median drop of 10% (range -26% to -5%) in the mean score for this item at three months. At six months, mean score was still 7% lower than baseline (range -18% to 0%) and at twelve months 5% lower (range -13% to +5%). For role functioning (i.e. ability to perform daily activities) after rectal cancer treatment, scores were -18% (range -39% to -2%), -8% (range -23% to +6%) and -5% (range -17% to +10%) respectively. Elderly patients experience the greatest and most persistent decline in self-care capacity (up to 61% at one year). This systematic review demonstrates that both physical functioning and role functioning are significantly affected by colorectal cancer surgery. Although initial losses are recovered partially during follow-up, there is a permanent loss in both aspects of physical capacity, in patients of all ages but especially in the elderly. This aspect should be included in patient counselling regarding surgery. Copyright © 2014 Elsevier Inc. All rights reserved.

Rapid Long-Range Disynaptic Inhibition Explains the Formation of Cortical Orientation Maps

PubMed Central

Antolík, Ján

2017-01-01

Competitive interactions are believed to underlie many types of cortical processing, ranging from memory formation, attention and development of cortical functional organization (e.g., development of orientation maps in primary visual cortex). In the latter case, the competitive interactions happen along the cortical surface, with local populations of neurons reinforcing each other, while competing with those displaced more distally. This specific configuration of lateral interactions is however in stark contrast with the known properties of the anatomical substrate, i.e., excitatory connections (mediating reinforcement) having longer reach than inhibitory ones (mediating competition). No satisfactory biologically plausible resolution of this conflict between anatomical measures, and assumed cortical function has been proposed. Recently a specific pattern of delays between different types of neurons in cat cortex has been discovered, where direct mono-synaptic excitation has approximately the same delay, as the combined delays of the disynaptic inhibitory interactions between excitatory neurons (i.e., the sum of delays from excitatory to inhibitory and from inhibitory to excitatory neurons). Here we show that this specific pattern of delays represents a biologically plausible explanation for how short-range inhibition can support competitive interactions that underlie the development of orientation maps in primary visual cortex. We demonstrate this statement analytically under simplifying conditions, and subsequently show using network simulations that development of orientation maps is preserved when long-range excitation, direct inhibitory to inhibitory interactions, and moderate inequality in the delays between excitatory and inhibitory pathways is added. PMID:28408869

Mapping Pluto Methane Ice

NASA Image and Video Library

2015-09-24

The Ralph/LEISA infrared spectrometer on NASA's New Horizons spacecraft mapped compositions across Pluto's surface as it flew past the planet on July 14, 2015. On the left, a map of methane ice abundance shows striking regional differences, with stronger methane absorption indicated by the brighter purple colors, and lower abundances shown in black. Data have only been received so far for the left half of Pluto's disk. At right, the methane map is merged with higher-resolution images from the spacecraft's Long Range Reconnaissance Imager (LORRI). http://photojournal.jpl.nasa.gov/catalog/PIA19953

Geophysical and isotopic mapping of preexisting crustal structures that influenced the location and development of the San Jacinto fault zone, southern California

USGS Publications Warehouse

Langenheim, V.E.; Jachens, R.C.; Morton, D.M.; Kistler, R.W.; Matti, J.C.

2004-01-01

We examine the role of preexisting crustal structure within the Peninsular Ranges batholith on determining the location of the San Jacinto fault zone by analysis of geophysical anomalies and initial strontium ratio data. A 1000-km-long boundary within the Peninsular Ranges batholith, separating relatively mafic, dense, and magnetic rocks of the western Peninsular Ranges batholith from the more felsic, less dense, and weakly magnetic rocks of the eastern Peninsular Ranges batholith, strikes north-northwest toward the San Jacinto fault zone. Modeling of the gravity and magnetic field anomalies caused by this boundary indicates that it extends to depths of at least 20 km. The anomalies do not cross the San Jacinto fault zone, but instead trend northwesterly and coincide with the fault zone. A 75-km-long gradient in initial strontium ratios (Sri) in the eastern Peninsular Ranges batholith coincides with the San Jacinto fault zone. Here rocks east of the fault are characterized by Sri greater than 0.706, indicating a source of largely continental crust, sedimentary materials, or different lithosphere. We argue that the physical property contrast produced by the Peninsular Ranges batholith boundary provided a mechanically favorable path for the San Jacinto fault zone, bypassing the San Gorgonio structural knot as slip was transferred from the San Andreas fault 1.0-1.5 Ma. Two historical M6.7 earthquakes may have nucleated along the Peninsular Ranges batholith discontinuity in San Jacinto Valley, suggesting that Peninsular Ranges batholith crustal structure may continue to affect how strain is accommodated along the San Jacinto fault zone. ?? 2004 Geological Society of America.

MAGSAT anomaly field inversion and interpretation for the US

NASA Technical Reports Server (NTRS)

Mayhew, M. A. (Principal Investigator)

1982-01-01

Long wavelength anomalies in the total magnetic field measured by MAGSAT over the United States and adjacent areas are inverted to an equivalent layer crustal magnetization distribution. The model is based on an equal area dipole grid at the Earth's surface. Model resolution, defined as the closest dipole spacing giving a solution having physical significance, is about 220 km for MAGSAT data in the elevation range 300-500 km. The magnetization contours correlate well with large scale tectonic provinces. A higher resolution (200 km) model based on relatively noise free synthetic "pseudodata" is also presented. Magnetic anomaly component data measured by MAGSAT is compared with synthetic anomaly component fields arising from an equivalent source dipole array at the Earth's surface generated from total field anomaly data alone. An excellent inverse correlation between apparent magnetization and heat flow in the western U.S. is demonstrated. A regional heat flow map which is presented and compared with published maps, predicts high heat flow in Nebraska and the Dakotas, suggesting the presence of a "blind" geothermal area of regional extent.

Mapping of the 3q27 region involved in Dup(3q) syndrome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rizzu, P.; Baldini, A.; Overhauser, J.

1994-09-01

The duplication 3q syndrome is characterized by partial trisomy of a segment of the long arm of chromosome 3. We have previously found that 3q26.3-3q27 is the minimal region of trisomy overlap. This critical region (CR) is delimited by two patient chromosome breakpoints, approximately 10 cM apart. In order to identify the gene(s) responsible for the Dup(3q) phenotype, we are generating a physical map of the region and identifying expressed sequences. First, we have generated a cytological map using two- and three-color fluorescence in situ hybridization on metaphase and interphase chromosomes. Results allowed us to determine the centromere-telomere orientation, ordermore » and relative distances of six cosmid clones mapped to the CR. Because some of the markers used are part of the consensus chromosome 3 map, our data were easily integrated with existing mapping information. Subsequently, we have included in the map YAC clones positive for polymorphic PCR markers identified by CEPH-Genethon, as well as newly isolated YACs. We have assigned them to the critical region 7 of the Genethon polymorphic markers and linked them to three YAC contigs. Currently our map includes two of the five genes known to map in this region. Interestingly, we found that these two functionally related genes (kininogen and histidin-rich glycoprotein) map to the same 1 Mb genomic fragment. As the physical map is being constructed we are searching for expressed sequences. Positive cDNAs have been found and their characterization is in progress. In conclusion, we will present an integrated map of 3q27 that includes genetic, physical and cytological information as well as gene annotation. As Dup(3q) syndrome is likely to be a contiguous gene syndrome, such a map will be necessary for our understanding of this multiple congenital anomaly.« less

A system for mapping sources of VHF and electric field pulses from in-cloud lightning at KSC

NASA Technical Reports Server (NTRS)

Thomson, Ewen M.; Medelius, Pedro J.

1991-01-01

The literature concerning VHF radiation and wideband electric fields from in-cloud lightning is reviewed. VHF location systems give impressive radio images of lightning in clouds with high spatial and temporal resolution. Using systems based on long and short baseline time-or-arrival and interferometry, workers have detected VHF sources that move at speeds of 10(exp 5) to 10(exp 8) m/s. The more slowly moving sources appear to be associated with channel formation but the physical basis for the higher speeds is not clear. In contrast, wideband electric fields are directly related to physical parameters such as current and tortuosity. A long baseline system is described to measure simultaneously VHF radiation and wideband electric fields at five stations at Kennedy Space Center. All signals are detected over remote, isolated ground planes with fiber optics for data transmission. The modification of this system to map rapidly varying dE/dt pulses is discussed.

Mapping the Physical and Chemical Conditions of the Ring Nebula

NASA Astrophysics Data System (ADS)

Leal-Ferreira, Marcelo L.; Aleman, Isabel; Gaughan, Andrea; Ladjal, Djazia; Ueta, Toshiya; Kerber, Samuel; Conn, Blair; Gardiner, Rhiannon; Tielens, Alexander G. G. M.

2017-10-01

We observed the Planetary Nebula NGC 6720 with the Gemini Telescope and the Gemini Multi-Object Spectrographs. We obtained spatial maps of 36 emission-lines in the wavelength range between 3600 Å and 9400 Å. We derived maps of c(Hβ), electronic densities, electronic temperatures, ionic and elemental abundances, and Ionization Correction Factors (ICFs) in the source and investigated the mass-loss history of the progenitor. The elemental abundance results indicate the need for ICFs based on three-dimensional photoionization models.

Bound states of dipolar bosons in one-dimensional systems

NASA Astrophysics Data System (ADS)

Volosniev, A. G.; Armstrong, J. R.; Fedorov, D. V.; Jensen, A. S.; Valiente, M.; Zinner, N. T.

2013-04-01

We consider one-dimensional tubes containing bosonic polar molecules. The long-range dipole-dipole interactions act both within a single tube and between different tubes. We consider arbitrary values of the externally aligned dipole moments with respect to the symmetry axis of the tubes. The few-body structures in this geometry are determined as a function of polarization angles and dipole strength by using both essentially exact stochastic variational methods and the harmonic approximation. The main focus is on the three-, four- and five-body problems in two or more tubes. Our results indicate that in the weakly coupled limit the intertube interaction is similar to a zero-range term with a suitable rescaled strength. This allows us to address the corresponding many-body physics of the system by constructing a model where bound chains with one molecule in each tube are the effective degrees of freedom. This model can be mapped onto one-dimensional Hamiltonians for which exact solutions are known.

Long work hours and physical fitness: 30-year risk of ischaemic heart disease and all-cause mortality among middle-aged Caucasian men.

PubMed

Holtermann, Andreas; Mortensen, Ole Steen; Burr, Hermann; Søgaard, Karen; Gyntelberg, Finn; Suadicani, Poul

2010-10-01

No previous long-term studies have examined if workers with low physical fitness have an increased risk of cardiovascular mortality due to long work hours. The aim of this study was to test this hypothesis. The study comprised 30-year follow-up of a cohort of 5249 gainfully employed men aged 40-59years in the Copenhagen Male Study. 274 men with cardiovascular disease were excluded from the follow-up. Physical fitness (maximal oxygen consumption, Vo(2)max) was estimated using the Åstrand bicycle ergometer test, and number of work hours was obtained from questionnaire items; 4943 men were eligible for the incidence study. 587 men (11.9%) died because of ischaemic heart disease (IHD). Cox analyses adjusted for age, blood pressure, smoking, alcohol, body mass index, diabetes, hypertension, physical work demands, and social class, showed that working more than 45h/week was associated with an increased risk of IHD mortality in the least fit (Vo(2)max range 15-26; HR 2.28, 95% CI 1.10 to 4.73), but not intermediate (Vo(2)max range 27-38; HR 0.94, 95% CI 0.59 to 1.51) and most fit men (Vo(2)max range 39-78; HR 0.91, 95% CI 0.41 to 2.02) referencing men working less than 40h/week. The findings indicate that men with low physical fitness are at increased risk for IHD mortality from working long hours. Men working long hours should be physically fit.

Towards a street-level pollen concentration and exposure forecast

NASA Astrophysics Data System (ADS)

van der Molen, Michiel; Krol, Maarten; van Vliet, Arnold; Heuvelink, Gerard

2015-04-01

Atmospheric pollen are an increasing source of nuisance for people in industrialised countries and are associated with significant cost of medication and sick leave. Citizen pollen warnings are often based on emission mapping based on local temperature sum approaches or on long-range atmospheric model approaches. In practise, locally observed pollen may originate from both local sources (plants in streets and gardens) and from long-range transport. We argue that making this distinction is relevant because the diurnal and spatial variation in pollen concentrations is much larger for pollen from local sources than for pollen from long-range transport due to boundary layer processes. This may have an important impact on exposure of citizens to pollen and on mitigation strategies. However, little is known about the partitioning of pollen into local and long-range origin categories. Our objective is to study how the concentrations of pollen from different sources vary temporally and spatially, and how the source region influences exposure and mitigation strategies. We built a Hay Fever Forecast system (HFF) based on WRF-chem, Allergieradar.nl, and geo-statistical downscaling techniques. HFF distinguishes between local (individual trees) and regional sources (based on tree distribution maps). We show first results on how the diurnal variation of pollen concentrations depends on source proximity. Ultimately, we will compare the model with local pollen counts, patient nuisance scores and medicine use.

Variability in the CO2-carbonic Acid System Parameters Across Coral Reef Settings in Hawaii: Perspectives from Multi-year Records from NOAA/PMEL MAPCO2 Buoys

NASA Astrophysics Data System (ADS)

De Carlo, E. H.; Drupp, P. S.; Thompson, R. W.; Mackenzie, F. T.; Muscielewicz, S.; Jones, S. M.; Feely, R. A.; Sabine, C. L.

2012-12-01

A series of MAP-CO2 buoys deployed in the coastal waters of Hawaii have produced multiyear high temporal resolution CO2 records in four different coral reef environments of the island of Oahu, Hawaii. This study is part of an integrated effort to understand the factors that influence the dynamics of CO2-carbonic acid system parameters in waters bathing Pacific high island coral reef ecosystems and subject to differing natural and anthropogenic stresses. The MAP-CO2 buoys are located in backreef, lagoonal, and fringing reef sites, and measure CO2 and O2 in seawater and in the atmosphere. Other sensors on the buoys record physical and biogeochemical parameters (CTD, chl-a, turbidity, pH, nitrate). The buoy records, when combined with data from synoptic spatial sampling, have allowed us to examine the interplay between biological cycles of productivity/respiration and calcification/dissolution and biogeochemical and physical forcing on hourly to inter-annual time scales, including those of land runoff. Our data demonstrate that coral reefs are subject to a wide range of pCO2, both on short and long time scales, and significant differences in the CO2-carbonic acid system dynamics across these various settings. We report that coral communities currently thrive in areas where the concentrations of CO2 can range from extremes as low as 200 ppm to as high as 1000 ppm and can fluctuate by ~500 ppm on any given day. The data provide evidence that net ecosystem calcification currently occurs in the presence of levels of CO2 predicted to occur well into the next century, although these coral reef ecosystems are only exposed to the extremes for short periods of time each day.

Topographical maps as complex networks

NASA Astrophysics Data System (ADS)

da Fontoura Costa, Luciano; Diambra, Luis

2005-02-01

The neuronal networks in the mammalian cortex are characterized by the coexistence of hierarchy, modularity, short and long range interactions, spatial correlations, and topographical connections. Particularly interesting, the latter type of organization implies special demands on developing systems in order to achieve precise maps preserving spatial adjacencies, even at the expense of isometry. Although the object of intensive biological research, the elucidation of the main anatomic-functional purposes of the ubiquitous topographical connections in the mammalian brain remains an elusive issue. The present work reports on how recent results from complex network formalism can be used to quantify and model the effect of topographical connections between neuronal cells over the connectivity of the network. While the topographical mapping between two cortical modules is achieved by connecting nearest cells from each module, four kinds of network models are adopted for implementing intramodular connections, including random, preferential-attachment, short-range, and long-range networks. It is shown that, though spatially uniform and simple, topographical connections between modules can lead to major changes in the network properties in some specific cases, depending on intramodular connections schemes, fostering more effective intercommunication between the involved neuronal cells and modules. The possible implications of such effects on cortical operation are discussed.

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

PubMed Central

2013-01-01

Background The wheat genome sequence is an essential tool for advanced genomic research and improvements. The generation of a high-quality wheat genome sequence is challenging due to its complex 17 Gb polyploid genome. To overcome these difficulties, sequencing through the construction of BAC-based physical maps of individual chromosomes is employed by the wheat genomics community. Here, we present the construction of the first comprehensive physical map of chromosome 1BS, and illustrate its unique gene space organization and evolution. Results Fingerprinted BAC clones were assembled into 57 long scaffolds, anchored and ordered with 2,438 markers, covering 83% of chromosome 1BS. The BAC-based chromosome 1BS physical map and gene order of the orthologous regions of model grass species were consistent, providing strong support for the reliability of the chromosome 1BS assembly. The gene space for chromosome 1BS spans the entire length of the chromosome arm, with 76% of the genes organized in small gene islands, accompanied by a two-fold increase in gene density from the centromere to the telomere. Conclusions This study provides new evidence on common and chromosome-specific features in the organization and evolution of the wheat genome, including a non-uniform distribution of gene density along the centromere-telomere axis, abundance of non-syntenic genes, the degree of colinearity with other grass genomes and a non-uniform size expansion along the centromere-telomere axis compared with other model cereal genomes. The high-quality physical map constructed in this study provides a solid basis for the assembly of a reference sequence of chromosome 1BS and for breeding applications. PMID:24359668

Creating a Road Map for Planetary Data Spatial Infrastructure

NASA Astrophysics Data System (ADS)

Naß, A.; Archinal, B.; Beyer, R.; DellaGiustina, D.; Fassett, C.; Gaddis, L.; Hagerty, J.; Hare, T.; Laura, J.; Lawrence, S.; Mazarico, E.; Patthoff, A.; Radebaugh, J.; Skinner, J.; Sutton, S.; Thomson, B. J.; Williams, D.

2017-09-01

There currently exists a clear need for long-range planning in regard to planetary spatial data and the development of infrastructure to support its use. Planetary data are the hard-earned fruits of planetary exploration, and the Mapping and Planetary Spatial Infrastructure Team (MAPSIT) mission is to ensure their availability for any conceivable investigation, now or in the future.

Mapping Physical Sciences Teachers' Concerns Regarding the New Curriculum in South Africa

ERIC Educational Resources Information Center

Gudyanga, Remeredzayi; Jita, Loyiso C.

2018-01-01

This article reports on a study investigating physical sciences teachers' stages of concern (SoC) profiles during the implementation of the curriculum and assessment policy statement (CAPS) in South Africa. Throughout reform implementation, it is conceivable that teachers go through different SoC, ranging from giving low priority to the reform…

Active hydrodynamics of synchronization and ordering in moving oscillators

NASA Astrophysics Data System (ADS)

Banerjee, Tirthankar; Basu, Abhik

2017-08-01

The nature of emergent collective behaviors of moving interacting physical agents is a long-standing open issue in physical and biological systems alike. This calls for studies on the control of synchronization and the degree of order in a collection of diffusively moving noisy oscillators. We address this by constructing a generic hydrodynamic theory for active phase fluctuations in a collection of a large number of nearly-phase-coherent moving oscillators in two dimensions. Our theory describes the general situation where phase fluctuations and oscillator mobility mutually affect each other. We show that the interplay between the active effects and the mobility of the oscillators leads to a variety of phenomena, ranging from synchronization with long-range, nearly-long-range, and quasi-long-range orders to instabilities and desynchronization with short-range order of the oscillator phases. We highlight the complex dependences of synchronization on the active effects. These should be testable in wide-ranging systems, e.g., oscillating chemical reactions in the presence of different reaction inhibitors and facilitators, live oriented cytoskeletal extracts, and vertebrate segmentation clocks.

Biocuration and improvement of the Diaphorina citri draft genome assembly with long reads, optical maps and long-range scaffolding

USDA-ARS?s Scientific Manuscript database

The Asian citrus psyllid (Diaphorina citri Kuwayama) is the insect vector of the bacterium Candidatus Liberibacter asiaticus (CLas), the causal agent for the citrus greening or Huanglongbing disease which threatens citrus industry worldwide. This vector is the primary target of approaches to stop th...

Neo-Deterministic and Probabilistic Seismic Hazard Assessments: a Comparative Analysis

NASA Astrophysics Data System (ADS)

Peresan, Antonella; Magrin, Andrea; Nekrasova, Anastasia; Kossobokov, Vladimir; Panza, Giuliano F.

2016-04-01

Objective testing is the key issue towards any reliable seismic hazard assessment (SHA). Different earthquake hazard maps must demonstrate their capability in anticipating ground shaking from future strong earthquakes before an appropriate use for different purposes - such as engineering design, insurance, and emergency management. Quantitative assessment of maps performances is an essential step also in scientific process of their revision and possible improvement. Cross-checking of probabilistic models with available observations and independent physics based models is recognized as major validation procedure. The existing maps from the classical probabilistic seismic hazard analysis (PSHA), as well as those from the neo-deterministic analysis (NDSHA), which have been already developed for several regions worldwide (including Italy, India and North Africa), are considered to exemplify the possibilities of the cross-comparative analysis in spotting out limits and advantages of different methods. Where the data permit, a comparative analysis versus the documented seismic activity observed in reality is carried out, showing how available observations about past earthquakes can contribute to assess performances of the different methods. Neo-deterministic refers to a scenario-based approach, which allows for consideration of a wide range of possible earthquake sources as the starting point for scenarios constructed via full waveforms modeling. The method does not make use of empirical attenuation models (i.e. Ground Motion Prediction Equations, GMPE) and naturally supplies realistic time series of ground shaking (i.e. complete synthetic seismograms), readily applicable to complete engineering analysis and other mitigation actions. The standard NDSHA maps provide reliable envelope estimates of maximum seismic ground motion from a wide set of possible scenario earthquakes, including the largest deterministically or historically defined credible earthquake. In addition, the flexibility of NDSHA allows for generation of ground shaking maps at specified long-term return times, which may permit a straightforward comparison between NDSHA and PSHA maps in terms of average rates of exceedance for specified time windows. The comparison of NDSHA and PSHA maps, particularly for very long recurrence times, may indicate to what extent probabilistic ground shaking estimates are consistent with those from physical models of seismic waves propagation. A systematic comparison over the territory of Italy is carried out exploiting the uniqueness of the Italian earthquake catalogue, a data set covering more than a millennium (a time interval about ten times longer than that available in most of the regions worldwide) with a satisfactory completeness level for M>5, which warrants the results of analysis. By analysing in some detail seismicity in the Vrancea region, we show that well constrained macroseismic field information for individual earthquakes may provide useful information about the reliability of ground shaking estimates. Finally, in order to generalise observations, the comparative analysis is extended to further regions where both standard NDSHA and PSHA maps are available (e.g. State of Gujarat, India). The final Global Seismic Hazard Assessment Program (GSHAP) results and the most recent version of Seismic Hazard Harmonization in Europe (SHARE) project maps, along with other national scale probabilistic maps, all obtained by PSHA, are considered for this comparative analysis.

3DView: Space physics data visualizer

NASA Astrophysics Data System (ADS)

Génot, V.; Beigbeder, L.; Popescu, D.; Dufourg, N.; Gangloff, M.; Bouchemit, M.; Caussarieu, S.; Toniutti, J.-P.; Durand, J.; Modolo, R.; André, N.; Cecconi, B.; Jacquey, C.; Pitout, F.; Rouillard, A.; Pinto, R.; Erard, S.; Jourdane, N.; Leclercq, L.; Hess, S.; Khodachenko, M.; Al-Ubaidi, T.; Scherf, M.; Budnik, E.

2018-04-01

3DView creates visualizations of space physics data in their original 3D context. Time series, vectors, dynamic spectra, celestial body maps, magnetic field or flow lines, and 2D cuts in simulation cubes are among the variety of data representation enabled by 3DView. It offers direct connections to several large databases and uses VO standards; it also allows the user to upload data. 3DView's versatility covers a wide range of space physics contexts.

Participatory GIS for Soil Conservation in Phewa Watershed of Nepal

NASA Astrophysics Data System (ADS)

Bhandari, K. P.

2012-07-01

Participatory Geographic Information Systems (PGIS) can integrate participatory methodologies with geo-spatial technologies for the representation of characteristic of particular place. Over the last decade, researchers use this method to integrate the local knowledge of community within a GIS and Society conceptual framework. Participatory GIS are tailored to answer specific geographic questions at the local level and their modes of implementation vary considerably across space, ranging from field-based, qualitative approaches to more complex web-based applications. These broad ranges of techniques, PGIS are becoming an effective methodology for incorporating community local knowledge into complex spatial decision-making processes. The objective of this study is to reduce the soil erosion by formulating the general rule for the soil conservation by participation of the stakeholders. The poster was prepared by satellite image, topographic map and Arc GIS software including the local knowledge. The data were collected from the focus group discussion and the individual questionnaire for incorporate the local knowledge and use it to find the risk map on the basis of economic, social and manageable physical factors for the sensitivity analysis. The soil erosion risk map is prepared by the physical factors Rainfall-runoff erosivity, Soil erodibility, Slope length, Slope steepness, Cover-management, Conservation practice using RUSLE model. After the comparison and discussion among stakeholders, researcher and export group, and the soil erosion risk map showed that socioeconomic, social and manageable physical factors management can reduce the soil erosion. The study showed that the preparation of the poster GIS map and implement this in the watershed area could reduce the soil erosion in the study area compared to the existing national policy.

Development and Implementation of Production Area of Agricultural Product Data Collection System Based on Embedded System

NASA Astrophysics Data System (ADS)

Xi, Lei; Guo, Wei; Che, Yinchao; Zhang, Hao; Wang, Qiang; Ma, Xinming

To solve problems in detecting the origin of agricultural products, this paper brings about an embedded data-based terminal, applies middleware thinking, and provides reusable long-range two-way data exchange module between business equipment and data acquisition systems. The system is constructed by data collection node and data center nodes. Data collection nodes taking embedded data terminal NetBoxII as the core, consisting of data acquisition interface layer, controlling information layer and data exchange layer, completing the data reading of different front-end acquisition equipments, and packing the data TCP to realize the data exchange between data center nodes according to the physical link (GPRS / CDMA / Ethernet). Data center node consists of the data exchange layer, the data persistence layer, and the business interface layer, which make the data collecting durable, and provide standardized data for business systems based on mapping relationship of collected data and business data. Relying on public communications networks, application of the system could establish the road of flow of information between the scene of origin certification and management center, and could realize the real-time collection, storage and processing between data of origin certification scene and databases of certification organization, and could achieve needs of long-range detection of agricultural origin.

Application of mobile gamma-ray spectrometry for soil mapping

NASA Astrophysics Data System (ADS)

Werban, Ulrike; Lein, Claudia; Pohle, Marco; Dietrich, Peter

2017-04-01

Gamma-ray measurements have a long tradition for geological surveys and deposit exploration using airborne and borehole logging systems. For these applications, the relationships between the measured physical parameter - the concentration of natural gamma emitters 40K, 238U and 232Th - and geological origin or sedimentary developments are well described. Thus, Gamma-ray spectrometry seems a useful tool for carrying out spatial mapping of physical parameters related to soil properties. The isotope concentration in soils depends on different soil parameters (e.g. geochemical composition, grain size fractions), which are a result of source rock properties and processes during soil geneses. There is a rising interest in the method for application in Digital Soil Mapping or as input data for environmental, ecological or hydrological modelling, e.g. as indicator for clay content. However, the gamma-ray measurement is influenced by endogenous factors and processes like soil moisture variation, erosion and deposition of material or cultivation. We will present results from a time series of car borne gamma-ray measurements to observe heterogeneity of soil on a floodplain area in Central Germany. The study area is characterised by high variations in grain size distribution and occurrence of flooding events. For the survey, we used a 4 l NaI(Tl) detector with GPS connection mounted on a sledge, which is towed across the field sites by a four-wheel-vehicle. The comparison of data from different dates shows similar structures with small variation between the data ranges and shape of structures. We will present our experiences concerning the application of gamma-ray measurements under variable field conditions and their impacts on data quality.

Coastal-Change and Glaciological Maps of the Antarctic Peninsula

USGS Publications Warehouse

Ferrigno, Jane G.; Williams, Richard S.; Thomson, Janet W.

2002-01-01

In 2000, the Glacier Studies Project (GSP) of the U.S. Geological Survey (USGS) and the Mapping and Geographic Information Centre (MAGIC) of the British Antarctic Survey (BAS) began a formal cooperative 3-year endeavor to prepare three maps of the Antarctic Peninsula region. The maps will be based on a large variety of cartographic, aerial photograph, satellite image, and ancillary historical datasets archived at each institution. The maps will document dynamic changes on the peninsula during the past 50 years. The three maps are part of a planned 24-map series (I-2600) being published by the USGS in both paper and digital format (see USGS Fact Sheet FS-050-98 at http://pubs.usgs.gov/factsheet/fs50-98/); the maps are of the Trinity Peninsula area (I-2600-A), the Larsen Ice Shelf area (I-2600-B), and the Palmer Land area (I-2600-C). The 1:1,000,000-scale maps will encompass an area 1,800 kilometers (km) long and with an average width of 400 km (range of 200 to 600 km wide); the area is between lats 60? and 76? S. and longs 52? and 80? W. Each of the three maps will include an interpretive booklet that analyzes documented historical changes in the fronts of the ice shelves and termini of the outlet glaciers.

A network of experimental forests and ranges: Providing soil solutions for a changing world

Treesearch

Mary Beth Adams

2010-01-01

The network of experimental forests and ranges of the USDA Forest Service represents significant opportunities to provide soil solutions to critical issues of a changing world. This network of 81 experimental forests and ranges encompasses broad geographic, biological, climatic and physical scales, and includes long-term data sets, and long-term experimental...

A comprehensive map of the porcine genome.

PubMed

Rohrer, G A; Alexander, L J; Hu, Z; Smith, T P; Keele, J W; Beattie, C W

1996-05-01

We report the highest density genetic linkage map for a livestock species produced to date. Three published maps for Sus scrofa were merged by genotyping virtually every publicly available microsatellite across a single reference population to yield 1042 linked loci, 536 of which are novel assignments, spanning 2286.2 cM (average interval 2.23 cM) in 19 linkage groups (18 autosomal and X chromosomes, n = 19). Linkage groups were constructed de novo and mapped by locus content to avoid propagation of errors in older genotypes. The physical and genetic maps were integrated with 123 informative loci assigned previously by fluorescence in situ hybridization (FISH). Fourteen linkage groups span the entire length of each chromosome. Coverage of chromosomes 11, 12, 15, and 18 will be evaluated as more markers are physically assigned. Marker-deficient regions were identified only on 11q1.7-qter and 14 cen-q1.2. Recombination rates (cM/Mbp) varied between and within chromosomes. Short chromosomal arms recombined at higher rates than long arms, and recombination was more frequent in telomeric regions than in pericentric regions. The high-resolution comprehensive map has the marker density needed to identify quantitative trait loci (QTL), implement marker-assisted selection or introgression and YAC contig construction or chromosomal microdissection.

A multiagency and multijurisdictional approach to mapping the glacial deposits of the Great Lakes region in three dimensions

USGS Publications Warehouse

Berg, Richard C.; Brown, Steven E.; Thomason, Jason F.; Hasenmueller, Nancy R.; Letsinger, Sally L.; Kincare, Kevin A.; Esch, John M.; Kehew, Alan E.; Thorleifson, L. Harvey; Kozlowski, Andrew L.; Bird, Brian C.; Pavey, Richard R.; Bajc, Andy F.; Burt, Abigail K.; Fleeger, Gary M.; Carson, Eric C.

2016-01-01

The Great Lakes Geologic Mapping Coalition (GLGMC), consisting of state geological surveys from all eight Great Lakes states, the Ontario Geological Survey, and the U.S. Geological Survey, was conceived out of a societal need for unbiased and scientifically defensible geologic information on the shallow subsurface, particularly the delineation, interpretation, and viability of groundwater resources. Only a small percentage (<10%) of the region had been mapped in the subsurface, and there was recognition that no single agency had the financial, intellectual, or physical resources to conduct such a massive geologic mapping effort at a detailed scale over a wide jurisdiction. The GLGMC provides a strategy for generating financial and stakeholder support for three-dimensional (3-D) geologic mapping, pooling of physical and personnel resources, and sharing of mapping and technological expertise to characterize the thick cover of glacial sediments. Since its inception in 1997, the GLGMC partners have conducted detailed surficial and 3-D geologic mapping within all jurisdictions, and concurrent significant scientific advancements have been made to increase understanding of the history and framework of geologic processes. More importantly, scientific information has been provided to public policymakers in understandable formats, emphasis has been placed on training early-career scientists in new mapping techniques and emerging technologies, and a successful model has been developed of state/provincial and federal collaboration focused on geologic mapping, as evidenced by this program's unprecedented and long-term successful experiment of 10 geological surveys working together to address common issues.

The case for infrasound as the long-range map cue in avian navigation

USGS Publications Warehouse

Hagstrum, J.T.

2007-01-01

Of the various 'map' and 'compass' components of Kramer's avian navigational model, the long-range map component is the least well understood. In this paper atmospheric infrasounds are proposed as the elusive longrange cues constituting the avian navigational map. Although infrasounds were considered a viable candidate for the avian map in the 1970s, and pigeons in the laboratory were found to detect sounds at surprisingly low frequencies (0.05 Hz), other tests appeared to support either of the currently favored olfactory or magnetic maps. Neither of these hypotheses, however, is able to explain the full set of observations, and the field has been at an impasse for several decades. To begin, brief descriptions of infrasonic waves and their passage through the atmosphere are given, followed by accounts of previously unexplained release results. These examples include 'release-site biases' which are deviations of departing pigeons from the homeward bearing, an annual variation in homing performance observed only in Europe, difficulties orienting over lakes and above temperature inversions, and the mysterious disruption of several pigeon races. All of these irregularities can be consistently explained by the deflection or masking of infrasonic cues by atmospheric conditions or by other infrasonic sources (microbaroms, sonic booms), respectively. A source of continuous geographic infrasound generated by atmosphere-coupled microseisms is also proposed. In conclusion, several suggestions are made toward resolving some of the conflicting experimental data with the pigeons' possible use of infrasonic cues.

Steady-state, cavityless, multimode superradiance in a cold vapor

NASA Astrophysics Data System (ADS)

Greenberg, Joel A.; Gauthier, Daniel J.

2012-07-01

We demonstrate steady-state, mirrorless superradiance in a cold vapor pumped by weak optical fields. Beyond a critical pump intensity of 1 mW/cm2, the vapor spontaneously transforms into a spatially self-organized state: a density grating forms. Scattering of the pump beams off this grating generates a pair of new, intense optical fields that act back on the vapor to enhance the atomic organization. We map out experimentally the superradiant phase transition boundary and show that it is well described by our theoretical model. The resulting superradiant emission is nearly coherent, persists for several seconds, displays strong temporal correlations between the various modes, and has a coherence time of several hundred μs. This system therefore has applications in fundamental studies of many-body physics with long-range interactions as well as all-optical and quantum information processing.

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms.

PubMed

Mathew, Lisa S; Spannagl, Manuel; Al-Malki, Ameena; George, Binu; Torres, Maria F; Al-Dous, Eman K; Al-Azwani, Eman K; Hussein, Emad; Mathew, Sweety; Mayer, Klaus F X; Mohamoud, Yasmin Ali; Suhre, Karsten; Malek, Joel A

2014-04-15

The date palm is one of the oldest cultivated fruit trees. It is critical in many ways to cultures in arid lands by providing highly nutritious fruit while surviving extreme heat and environmental conditions. Despite its importance from antiquity, few genetic resources are available for improving the productivity and development of the dioecious date palm. To date there has been no genetic map and no sex chromosome has been identified. Here we present the first genetic map for date palm and identify the putative date palm sex chromosome. We placed ~4000 markers on the map using nearly 1200 framework markers spanning a total of 1293 cM. We have integrated the genetic map, derived from the Khalas cultivar, with the draft genome and placed up to 19% of the draft genome sequence scaffolds onto linkage groups for the first time. This analysis revealed approximately ~1.9 cM/Mb on the map. Comparison of the date palm linkage groups revealed significant long-range synteny to oil palm. Analysis of the date palm sex-determination region suggests it is telomeric on linkage group 12 and recombination is not suppressed in the full chromosome. Based on a modified genotyping-by-sequencing approach we have overcome challenges due to lack of genetic resources and provide the first genetic map for date palm. Combined with the recent draft genome sequence of the same cultivar, this resource offers a critical new tool for date palm biotechnology, palm comparative genomics and a better understanding of sex chromosome development in the palms.

Troposphere mapping functions for GPS and very long baseline interferometry from European Centre for Medium-Range Weather Forecasts operational analysis data

NASA Astrophysics Data System (ADS)

Boehm, Johannes; Werl, Birgit; Schuh, Harald

2006-02-01

In the analyses of geodetic very long baseline interferometry (VLBI) and GPS data the analytic form used for mapping of the atmosphere delay from zenith to the line of site is most often a three-parameter continued fraction in 1/sin(elevation). Using the 40 years reanalysis (ERA-40) data of the European Centre for Medium-Range Weather Forecasts for the year 2001, the b and c coefficients of the continued fraction form for the hydrostatic mapping functions have been redetermined. Unlike previous mapping functions based on data from numerical weather models (isobaric mapping functions (Niell, 2000) and Vienna mapping functions (VMF) (Boehm and Schuh, 2004)), the new c coefficients are dependent on the day of the year, and unlike the Niell mapping functions (Niell, 1996) they are no longer symmetric with respect to the equator (apart from the opposite phase for the two hemispheres). Compared to VMF, this causes an effect on the VLBI or GPS station heights that is constant and as large as 2 mm at the equator and that varies seasonally between 4 mm and 0 mm at the poles. The updated VMF, based on these new coefficients and called VMF1 hereinafter, yields slightly better baseline length repeatabilities for VLBI data. The hydrostatic and wet mapping functions are applied in various combinations with different kinds of a priori zenith delays in the analyses of all VLBI International VLBI Service for Geodesy and Astrometry (IVS)-R1 and IVS-R4 24-hour sessions of 2002 and 2003; the investigations concentrate on baseline length repeatabilities, as well as on absolute changes of station heights.

Fiber-connected, indefinite Morse 2-functions on connected n-manifolds

PubMed Central

Gay, David T.; Kirby, Robion C.

2011-01-01

We discuss generic smooth maps from smooth manifolds to smooth surfaces, which we call “Morse 2-functions,” and homotopies between such maps. The two central issues are to keep the fibers connected, in which case the Morse 2-function is “fiber-connected,” and to avoid local extrema over one-dimensional submanifolds of the range, in which case the Morse 2-function is “indefinite.” This is foundational work for the long-range goal of defining smooth invariants from Morse 2-functions using tools analogous to classical Morse homology and Cerf theory. PMID:21518894

Equilibrium, metastability, and hysteresis in a model spin-crossover material with nearest-neighbor antiferromagnetic-like and long-range ferromagnetic-like interactions

NASA Astrophysics Data System (ADS)

Rikvold, Per Arne; Brown, Gregory; Miyashita, Seiji; Omand, Conor; Nishino, Masamichi

2016-02-01

Phase diagrams and hysteresis loops were obtained by Monte Carlo simulations and a mean-field method for a simplified model of a spin-crossover material with a two-step transition between the high-spin and low-spin states. This model is a mapping onto a square-lattice S =1 /2 Ising model with antiferromagnetic nearest-neighbor and ferromagnetic Husimi-Temperley (equivalent-neighbor) long-range interactions. Phase diagrams obtained by the two methods for weak and strong long-range interactions are found to be similar. However, for intermediate-strength long-range interactions, the Monte Carlo simulations show that tricritical points decompose into pairs of critical end points and mean-field critical points surrounded by horn-shaped regions of metastability. Hysteresis loops along paths traversing the horn regions are strongly reminiscent of thermal two-step transition loops with hysteresis, recently observed experimentally in several spin-crossover materials. We believe analogous phenomena should be observable in experiments and simulations for many systems that exhibit competition between local antiferromagnetic-like interactions and long-range ferromagnetic-like interactions caused by elastic distortions.

Long-Range Coulomb Effect in Intense Laser-Driven Photoelectron Dynamics.

PubMed

Quan, Wei; Hao, XiaoLei; Chen, YongJu; Yu, ShaoGang; Xu, SongPo; Wang, YanLan; Sun, RenPing; Lai, XuanYang; Wu, ChengYin; Gong, QiHuang; He, XianTu; Liu, XiaoJun; Chen, Jing

2016-06-03

In strong field atomic physics community, long-range Coulomb interaction has for a long time been overlooked and its significant role in intense laser-driven photoelectron dynamics eluded experimental observations. Here we report an experimental investigation of the effect of long-range Coulomb potential on the dynamics of near-zero-momentum photoelectrons produced in photo-ionization process of noble gas atoms in intense midinfrared laser pulses. By exploring the dependence of photoelectron distributions near zero momentum on laser intensity and wavelength, we unambiguously demonstrate that the long-range tail of the Coulomb potential (i.e., up to several hundreds atomic units) plays an important role in determining the photoelectron dynamics after the pulse ends.

Long-Range Coulomb Effect in Intense Laser-Driven Photoelectron Dynamics

PubMed Central

Quan, Wei; Hao, XiaoLei; Chen, YongJu; Yu, ShaoGang; Xu, SongPo; Wang, YanLan; Sun, RenPing; Lai, XuanYang; Wu, ChengYin; Gong, QiHuang; He, XianTu; Liu, XiaoJun; Chen, Jing

2016-01-01

In strong field atomic physics community, long-range Coulomb interaction has for a long time been overlooked and its significant role in intense laser-driven photoelectron dynamics eluded experimental observations. Here we report an experimental investigation of the effect of long-range Coulomb potential on the dynamics of near-zero-momentum photoelectrons produced in photo-ionization process of noble gas atoms in intense midinfrared laser pulses. By exploring the dependence of photoelectron distributions near zero momentum on laser intensity and wavelength, we unambiguously demonstrate that the long-range tail of the Coulomb potential (i.e., up to several hundreds atomic units) plays an important role in determining the photoelectron dynamics after the pulse ends. PMID:27256904

78 FR 50405 - High Energy Physics Advisory Panel

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-19

... DEPARTMENT OF ENERGY High Energy Physics Advisory Panel AGENCY: Office of Science, Department of..., General Services Administration, notice is hereby given that the High Energy Physics Advisory Panel will... Sciences Directorate (NSF), on long-range planning and priorities in the national high-energy physics...

Comprehensive Long-Range Program for Library Services in Wisconsin.

ERIC Educational Resources Information Center

Wisconsin State Dept. of Public Instruction, Madison. Div. of Library Services.

The main areas of concern in this long-range development program to meet the requirements of the Library Services and Construction Act are the following: public library development and facilities, public library services for the disadvantaged, library services for the blind, physically handicapped and institutionalized persons, intertype library…

Classifying galaxy spectra at 0.5 < z < 1 with self-organizing maps

NASA Astrophysics Data System (ADS)

Rahmani, S.; Teimoorinia, H.; Barmby, P.

2018-05-01

The spectrum of a galaxy contains information about its physical properties. Classifying spectra using templates helps elucidate the nature of a galaxy's energy sources. In this paper, we investigate the use of self-organizing maps in classifying galaxy spectra against templates. We trained semi-supervised self-organizing map networks using a set of templates covering the wavelength range from far ultraviolet to near infrared. The trained networks were used to classify the spectra of a sample of 142 galaxies with 0.5 < z < 1 and the results compared to classifications performed using K-means clustering, a supervised neural network, and chi-squared minimization. Spectra corresponding to quiescent galaxies were more likely to be classified similarly by all methods while starburst spectra showed more variability. Compared to classification using chi-squared minimization or the supervised neural network, the galaxies classed together by the self-organizing map had more similar spectra. The class ordering provided by the one-dimensional self-organizing maps corresponds to an ordering in physical properties, a potentially important feature for the exploration of large datasets.

The gene coding for glial cell line derived neurotrophic factor (GDNF) maps to chromosome 5p12-p13.1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schindelhauer, D.; Schuffenhauer, S.; Meitinger, T.

1995-08-10

The gene coding for glial cell line derived neurotrophic factor (GDNF) has biological properties that may have potential as a treatment for Parkinson`s and motoneuron diseases. Using the NIGMS Mapping Panel 2, we have localized the GDNF gene to human chromosome 5p12-p13.1. Large NruI and NotI fragments on chromosome 5 will facilitate the construction of a long-range map of the region. 26 refs., 1 fig., 1 tab.

A global tectonic activity map with orbital photographic supplement

NASA Technical Reports Server (NTRS)

Lowman, P. D., Jr.

1981-01-01

A three part map showing equatorial and polar regions was compiled showing tectonic and volcanic activity of the past one million years, including the present. Features shown include actively spreading ridges, spreading rates, major active faults, subduction zones, well defined plates, and volcanic areas active within the past one million years. Activity within this period was inferred from seismicity (instrumental and historic), physiography, and published literature. The tectonic activity map was used for planning global geodetic programs of satellite laser ranging and very long base line interferometry and for geologic education.

Autonomous Navigation by a Mobile Robot

NASA Technical Reports Server (NTRS)

Huntsberger, Terrance; Aghazarian, Hrand

2005-01-01

ROAMAN is a computer program for autonomous navigation of a mobile robot on a long (as much as hundreds of meters) traversal of terrain. Developed for use aboard a robotic vehicle (rover) exploring the surface of a remote planet, ROAMAN could also be adapted to similar use on terrestrial mobile robots. ROAMAN implements a combination of algorithms for (1) long-range path planning based on images acquired by mast-mounted, wide-baseline stereoscopic cameras, and (2) local path planning based on images acquired by body-mounted, narrow-baseline stereoscopic cameras. The long-range path-planning algorithm autonomously generates a series of waypoints that are passed to the local path-planning algorithm, which plans obstacle-avoiding legs between the waypoints. Both the long- and short-range algorithms use an occupancy-grid representation in computations to detect obstacles and plan paths. Maps that are maintained by the long- and short-range portions of the software are not shared because substantial localization errors can accumulate during any long traverse. ROAMAN is not guaranteed to generate an optimal shortest path, but does maintain the safety of the rover.

Multi-Autonomous Ground-robotic International Challenge (MAGIC) 2010

DTIC Science & Technology

2010-12-14

SLAM technique since this setup, having a LIDAR with long-range high-accuracy measurement capability, allows accurate localization and mapping more...achieve the accuracy of 25cm due to the use of multi-dimensional information. OGM is, similarly to SLAM , carried out by using LIDAR data. The OGM...a result of the development and implementation of the hybrid feature-based/scan-matching Simultaneous Localization and Mapping ( SLAM ) technique, the

UNDERWATER MAPPING USING GLORIA AND MIPS.

USGS Publications Warehouse

Chavez, Pat S.; Anderson, Jeffrey A.; Schoonmaker, James W.

1987-01-01

Advances in digital image processing of the (GLORIA) Geological Long-Range Induced Asdic) sidescan-sonar image data have made it technically and economically possible to map large areas of the ocean floor including the Exclusive Economic Zone. Software was written to correct both geometric and radiometric distortions that exist in the original raw GLORIA data. A digital mosaicking technique was developed enabling 2 degree by 2 degree quadrangles to be generated.

New Methodologies Applied to Seismic Hazard Assessment in Southern Calabria (Italy)

NASA Astrophysics Data System (ADS)

Console, R.; Chiappini, M.; Speranza, F.; Carluccio, R.; Greco, M.

2016-12-01

Although it is generally recognized that the M7+ 1783 and 1908 Calabria earthquakes were caused by normal faults rupturing the upper crust of the southern Calabria-Peloritani area, no consensus exists on seismogenic source location and orientation. A recent high-resolution low-altitude aeromagnetic survey of southern Calabria and Messina straits suggested that the sources of the 1783 and 1908 earthquakes are en echelon faults belonging to the same NW dipping normal fault system straddling the whole southern Calabria. The application of a newly developed physics-based earthquake simulator to the active fault system modeled by the data obtained from the aeromagnetic survey and other recent geological studies has allowed the production of catalogs lasting 100,000 years and containing more than 25,000 events of magnitudes ≥ 4.0. The algorithm on which this simulator is based is constrained by several physical elements as: (a) an average slip rate due to tectonic loading for every single segment in the investigated fault system, (b) the process of rupture growth and termination, leading to a self-organized earthquake magnitude distribution, and (c) interaction between earthquake sources, including small magnitude events. Events nucleated in one segment are allowed to expand into neighboring segments, if they are separated by a given maximum range of distance. The application of our simulation algorithm to Calabria region provides typical features in time, space and magnitude behaviour of the seismicity, which can be compared with those of the real observations. These features include long-term pseudo-periodicity and clustering of strong earthquakes, and a realistic earthquake magnitude distribution departing from the Gutenberg-Richter distribution in the moderate and higher magnitude range. Lastly, as an example of a possible use of synthetic catalogs, an attenuation law has been applied to all the events reported in the synthetic catalog for the production of maps showing the exceedence probability of given values of peak acceleration (PGA) on the territory under investigation. These maps can be compared with the existing hazard maps that are presently used in the national seismic building regulations.

Mapping the Drude polarizable force field onto a multipole and induced dipole model

NASA Astrophysics Data System (ADS)

Huang, Jing; Simmonett, Andrew C.; Pickard, Frank C.; MacKerell, Alexander D.; Brooks, Bernard R.

2017-10-01

The induced dipole and the classical Drude oscillator represent two major approaches for the explicit inclusion of electronic polarizability into force field-based molecular modeling and simulations. In this work, we explore the equivalency of these two models by comparing condensed phase properties computed using the Drude force field and a multipole and induced dipole (MPID) model. Presented is an approach to map the electrostatic model optimized in the context of the Drude force field onto the MPID model. Condensed phase simulations on water and 15 small model compounds show that without any reparametrization, the MPID model yields properties similar to the Drude force field with both models yielding satisfactory reproduction of a range of experimental values and quantum mechanical data. Our results illustrate that the Drude oscillator model and the point induced dipole model are different representations of essentially the same physical model. However, results indicate the presence of small differences between the use of atomic multipoles and off-center charge sites. Additionally, results on the use of dispersion particle mesh Ewald further support its utility for treating long-range Lennard Jones dispersion contributions in the context of polarizable force fields. The main motivation in demonstrating the transferability of parameters between the Drude and MPID models is that the more than 15 years of development of the Drude polarizable force field can now be used with MPID formalism without the need for dual-thermostat integrators nor self-consistent iterations. This opens up a wide range of new methodological opportunities for polarizable models.

Review, mapping and analysis of the agricultural plastic waste generation and consolidation in Europe.

PubMed

Briassoulis, Demetres; Babou, Epifania; Hiskakis, Miltiadis; Scarascia, Giacomo; Picuno, Pietro; Guarde, Dorleta; Dejean, Cyril

2013-12-01

A review of agricultural plastic waste generation and consolidation in Europe is presented. A detailed geographical mapping of the agricultural plastic use and waste generation in Europe was conducted focusing on areas of high concentration of agricultural plastics. Quantitative data and analysis of the agricultural plastic waste generation by category, geographical distribution and compositional range, and physical characteristics of the agricultural plastic waste per use and the temporal distribution of the waste generation are presented. Data were collected and cross-checked from a variety of sources, including European, national and regional services and organizations, local agronomists, retailers and farmers, importers and converters. Missing data were estimated indirectly based on the recorded cultivated areas and the characteristics of the agricultural plastics commonly used in the particular regions. The temporal distribution, the composition and physical characteristics of the agricultural plastic waste streams were mapped by category and by application. This study represents the first systematic effort to map and analyse agricultural plastic waste generation and consolidation in Europe.

Sedimentary facies, geomorphic features and habitat distribution at the Hudson Canyon head from AUV multibeam data

NASA Astrophysics Data System (ADS)

Pierdomenico, Martina; Guida, Vincent G.; Macelloni, Leonardo; Chiocci, Francesco L.; Rona, Peter A.; Scranton, Mary I.; Asper, Vernon; Diercks, Arne

2015-11-01

Mapping of physical benthic habitats at the head of Hudson Canyon was performed by means of integrated analysis of acoustic data, video surveys and seafloor sampling. Acoustic mapping, performed using AUV-mounted multibeam sonar, provided ultra-high resolution bathymetric and backscatter imagery for the identification of geomorphological features and the characterization of surficial sediments. Habitat characterization in terms of seafloor texture and identification of benthic and demersal communities was accomplished by visual analysis of still photographs from underwater vehicles. Habitat classes were defined on the basis of the seafloor texture observed on photos and then compared with the geophysical data in order to associate habitats to acoustic classes and/or geomorphological features. This enabled us to infer habitat distribution on the basis of morpho-acoustic classes and extrapolate results over larger areas. Results from bottom trawling were used to determine the overall biodiversity within the identified habitats. Our analysis revealed a variety of topographic and sedimentological structures that provide a wide range of physical habitats. A variety of sandy and muddy substrates, gravel patches and mudstone outcrops host rich and varied faunal assemblages, including cold-water corals and sponge communities. Pockmark fields below 300 m depth suggest that methane-based chemosynthetic carbonate deposition may contributes to creation of specific benthic habitats. Hummocky terrain has been delineated along the canyon rims and associated with extensive, long-term burrowing activity by golden tilefish (Lopholatilus chamaeleonticeps). These results show the relationships of physical features to benthic habitat variation, support the notion of the area as a biodiversity hotspot and define essential habitats for planning of sustainable regional fisheries.

Intervention Mapping as a framework for developing an intervention at the worksite for older construction workers.

PubMed

Oude Hengel, Karen M; Joling, Catelijne I; Proper, Karin I; van der Molen, Henk F; Bongers, Paulien M

2011-01-01

The purpose of this study was to apply the Intervention Mapping approach as a framework in the development of a worksite intervention to improve the work ability of construction workers. Development of an intervention by using the Intervention Mapping approach. Construction worksite. Construction workers aged 45 years and older. According to the principles of Intervention Mapping, evidence from the literature was combined with data collected from stakeholders (e.g., construction workers, managers, providers). The Intervention Mapping approach resulted in an intervention with the following components: (1) two individual visits of a physical therapist to lower the physical workload, (2) a Rest-Break tool to improve the balance between work and recovery, and (3) two empowerment training sessions to increase the range of influence at the worksite. Application of Intervention Mapping in the development of a worksite prevention program was useful in the construction industry to obtain a positive attitude and commitment. Stakeholders could give input regarding the program components as well as provide specific leads for the practical intervention strategy. Moreover, it also gives insight in the current theoretical and empirical knowledge in the field of improving the work ability of older workers in the construction industry.

Physics at an upgraded Fermilab proton driver

DOE Office of Scientific and Technical Information (OSTI.GOV)

Geer, S.; /Fermilab

2005-07-01

In 2004 the Fermilab Long Range Planning Committee identified a new high intensity Proton Driver as an attractive option for the future, primarily motivated by the recent exciting developments in neutrino physics. Over the last few months a physics study has developed the physics case for the Fermilab Proton Driver. The potential physics opportunities are discussed.

A Hybrid Indoor Localization and Navigation System with Map Matching for Pedestrians Using Smartphones.

PubMed

Tian, Qinglin; Salcic, Zoran; Wang, Kevin I-Kai; Pan, Yun

2015-12-05

Pedestrian dead reckoning is a common technique applied in indoor inertial navigation systems that is able to provide accurate tracking performance within short distances. Sensor drift is the main bottleneck in extending the system to long-distance and long-term tracking. In this paper, a hybrid system integrating traditional pedestrian dead reckoning based on the use of inertial measurement units, short-range radio frequency systems and particle filter map matching is proposed. The system is a drift-free pedestrian navigation system where position error and sensor drift is regularly corrected and is able to provide long-term accurate and reliable tracking. Moreover, the whole system is implemented on a commercial off-the-shelf smartphone and achieves real-time positioning and tracking performance with satisfactory accuracy.

Local and Long-Range Circuit Connections to Hilar Mossy Cells in the Dentate Gyrus

PubMed Central

Sun, Yanjun; Grieco, Steven F.; Holmes, Todd C.

2017-01-01

Abstract Hilar mossy cells are the prominent glutamatergic cell type in the dentate hilus of the dentate gyrus (DG); they have been proposed to have critical roles in the DG network. To better understand how mossy cells contribute to DG function, we have applied new viral genetic and functional circuit mapping approaches to quantitatively map and compare local and long-range circuit connections of mossy cells and dentate granule cells in the mouse. The great majority of inputs to mossy cells consist of two parallel inputs from within the DG: an excitatory input pathway from dentate granule cells and an inhibitory input pathway from local DG inhibitory neurons. Mossy cells also receive a moderate degree of excitatory and inhibitory CA3 input from proximal CA3 subfields. Long range inputs to mossy cells are numerically sparse, and they are only identified readily from the medial septum and the septofimbrial nucleus. In comparison, dentate granule cells receive most of their inputs from the entorhinal cortex. The granule cells receive significant synaptic inputs from the hilus and the medial septum, and they also receive direct inputs from both distal and proximal CA3 subfields, which has been underdescribed in the existing literature. Our slice-based physiological mapping studies further supported the identified circuit connections of mossy cells and granule cells. Together, our data suggest that hilar mossy cells are major local circuit integrators and they exert modulation of the activity of dentate granule cells as well as the CA3 region through “back-projection” pathways. PMID:28451637

General Guide for Community College System Physical Planning. 2nd Printing.

ERIC Educational Resources Information Center

Mogi, Hitoshi

Part I describes a general outline for producing long range development plans for the Hawaii Community College System. Long-range planning is defined and discussed in terms of basic elements of academic requirements, quality of campus, space requirements, environmental factors, administrative factors, and adjustment factors of the general plans.…

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

PubMed Central

2014-01-01

Background The date palm is one of the oldest cultivated fruit trees. It is critical in many ways to cultures in arid lands by providing highly nutritious fruit while surviving extreme heat and environmental conditions. Despite its importance from antiquity, few genetic resources are available for improving the productivity and development of the dioecious date palm. To date there has been no genetic map and no sex chromosome has been identified. Results Here we present the first genetic map for date palm and identify the putative date palm sex chromosome. We placed ~4000 markers on the map using nearly 1200 framework markers spanning a total of 1293 cM. We have integrated the genetic map, derived from the Khalas cultivar, with the draft genome and placed up to 19% of the draft genome sequence scaffolds onto linkage groups for the first time. This analysis revealed approximately ~1.9 cM/Mb on the map. Comparison of the date palm linkage groups revealed significant long-range synteny to oil palm. Analysis of the date palm sex-determination region suggests it is telomeric on linkage group 12 and recombination is not suppressed in the full chromosome. Conclusions Based on a modified gentoyping-by-sequencing approach we have overcome challenges due to lack of genetic resources and provide the first genetic map for date palm. Combined with the recent draft genome sequence of the same cultivar, this resource offers a critical new tool for date palm biotechnology, palm comparative genomics and a better understanding of sex chromosome development in the palms. PMID:24735434

Large-deviation probabilities for correlated Gaussian processes and intermittent dynamical systems

NASA Astrophysics Data System (ADS)

Massah, Mozhdeh; Nicol, Matthew; Kantz, Holger

2018-05-01

In its classical version, the theory of large deviations makes quantitative statements about the probability of outliers when estimating time averages, if time series data are identically independently distributed. We study large-deviation probabilities (LDPs) for time averages in short- and long-range correlated Gaussian processes and show that long-range correlations lead to subexponential decay of LDPs. A particular deterministic intermittent map can, depending on a control parameter, also generate long-range correlated time series. We illustrate numerically, in agreement with the mathematical literature, that this type of intermittency leads to a power law decay of LDPs. The power law decay holds irrespective of whether the correlation time is finite or infinite, and hence irrespective of whether the central limit theorem applies or not.

Combining land use data acquired from Landsat with soil map data

NASA Technical Reports Server (NTRS)

Westin, F. C.; Brandner, T. M.

1981-01-01

A method currently used to derive agrophysical units (APUs), i.e., geographical areas having definable/comparable agronomic and physical parameters which reflect a range in agricultural use and management, is discussed with reference to results obtained for South Dakota and an area in China. The method consists of combining agricultural land use data acquired from Landsat with soil map data. The resulting map units are soil associations characterized by cropland use intensity, and they can be used to identify major cropland areas and to develop a rating reflecting the relative potential of the soils in the delineated area for crop production, as well as to update small-scale soil maps.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rikvold, Per Arne; Brown, Gregory; Miyashita, Seiji

Phase diagrams and hysteresis loops were obtained by Monte Carlo simulations and a mean- field method for a simplified model of a spin-crossovermaterialwith a two-step transition between the high-spin and low-spin states. This model is a mapping onto a square-lattice S = 1/2 Ising model with antiferromagnetic nearest-neighbor and ferromagnetic Husimi-Temperley ( equivalent-neighbor) long-range interactions. Phase diagrams obtained by the two methods for weak and strong long-range interactions are found to be similar. However, for intermediate-strength long-range interactions, the Monte Carlo simulations show that tricritical points decompose into pairs of critical end points and mean-field critical points surrounded by horn-shapedmore » regions of metastability. Hysteresis loops along paths traversing the horn regions are strongly reminiscent of thermal two-step transition loops with hysteresis, recently observed experimentally in several spin-crossover materials. As a result, we believe analogous phenomena should be observable in experiments and simulations for many systems that exhibit competition between local antiferromagnetic-like interactions and long-range ferromagnetic-like interactions caused by elastic distortions.« less

A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome

PubMed Central

2011-01-01

Background Potato is the world's third most important food crop, yet cultivar improvement and genomic research in general remain difficult because of the heterozygous and tetraploid nature of its genome. The development of physical map resources that can facilitate genomic analyses in potato has so far been very limited. Here we present the methods of construction and the general statistics of the first two genome-wide BAC physical maps of potato, which were made from the heterozygous diploid clone RH89-039-16 (RH). Results First, a gel electrophoresis-based physical map was made by AFLP fingerprinting of 64478 BAC clones, which were aligned into 4150 contigs with an estimated total length of 1361 Mb. Screening of BAC pools, followed by the KeyMaps in silico anchoring procedure, identified 1725 AFLP markers in the physical map, and 1252 BAC contigs were anchored the ultradense potato genetic map. A second, sequence-tag-based physical map was constructed from 65919 whole genome profiling (WGP) BAC fingerprints and these were aligned into 3601 BAC contigs spanning 1396 Mb. The 39733 BAC clones that overlap between both physical maps provided anchors to 1127 contigs in the WGP physical map, and reduced the number of contigs to around 2800 in each map separately. Both physical maps were 1.64 times longer than the 850 Mb potato genome. Genome heterozygosity and incomplete merging of BAC contigs are two factors that can explain this map inflation. The contig information of both physical maps was united in a single table that describes hybrid potato physical map. Conclusions The AFLP physical map has already been used by the Potato Genome Sequencing Consortium for sequencing 10% of the heterozygous genome of clone RH on a BAC-by-BAC basis. By layering a new WGP physical map on top of the AFLP physical map, a genetically anchored genome-wide framework of 322434 sequence tags has been created. This reference framework can be used for anchoring and ordering of genomic sequences of clone RH (and other potato genotypes), and opens the possibility to finish sequencing of the RH genome in a more efficient way via high throughput next generation approaches. PMID:22142254

Application of a computerized environmental information system to master and sector planning

NASA Technical Reports Server (NTRS)

Stewart, J. C.

1978-01-01

A computerized composite mapping system developed as an aid in the land use decision making process is described. Emphasis is placed on consideration of the environment in urban planning. The presence of alluvium, shallow bedrock, surface water, and vegetation growth are among the environmental factors considered. An analysis of the Shady Grove Sector planning is presented as an example of the use of computerized composite mapping for long range planning.

A spherical electron-channelling pattern map for use in quartz petrofabric analysis

USGS Publications Warehouse

Lloyd, G.E.; Ferguson, C.C.

1986-01-01

Electron channelling patterns (ECP's) are formed in the scanning electron microscope (SEM) by the interaction between the incident electrons and the lattice of crystalline specimens. The patterns are unique for a particular crystallographic orientation and are therefore of considerable potential in petrofabric studies provided they can be accurately indexed. Indexing requires an ECP-map of the crystallographic stereogram or unit triangle covering all possible orientations and hence ECP patterns. Due to the presence of long-range distortions in planar ECP-maps, it is more convenient to construct the maps over a spherical surface. This also facilitates the indexing of individual ECP's. A spherical ECP-map for quartz is presented together with an example of its use in petrofabric analysis. ?? 1986.

Mapping in an apple (Malus x domestica) F1 segregating population based on physical clustering of differentially expressed genes

USDA-ARS?s Scientific Manuscript database

Background: Apple tree breeding is slow and difficult due to long generation times, self incompatibility, and complex genetics. The identification of molecular markers linked to traits of interest is a way to expedite the breeding process. In the present study, we aimed to identify genes whose stead...

Imaging quasiperiodic electronic states in a synthetic Penrose tiling

NASA Astrophysics Data System (ADS)

Collins, Laura C.; Witte, Thomas G.; Silverman, Rochelle; Green, David B.; Gomes, Kenjiro K.

2017-06-01

Quasicrystals possess long-range order but lack the translational symmetry of crystalline solids. In solid state physics, periodicity is one of the fundamental properties that prescribes the electronic band structure in crystals. In the absence of periodicity and the presence of quasicrystalline order, the ways that electronic states change remain a mystery. Scanning tunnelling microscopy and atomic manipulation can be used to assemble a two-dimensional quasicrystalline structure mapped upon the Penrose tiling. Here, carbon monoxide molecules are arranged on the surface of Cu(111) one at a time to form the potential landscape that mimics the ionic potential of atoms in natural materials by constraining the electrons in the two-dimensional surface state of Cu(111). The real-space images reveal the presence of the quasiperiodic order in the electronic wave functions and the Fourier analysis of our results links the energy of the resonant states to the local vertex structure of the quasicrystal.

Imaging quasiperiodic electronic states in a synthetic Penrose tiling.

PubMed

Collins, Laura C; Witte, Thomas G; Silverman, Rochelle; Green, David B; Gomes, Kenjiro K

2017-06-22

Quasicrystals possess long-range order but lack the translational symmetry of crystalline solids. In solid state physics, periodicity is one of the fundamental properties that prescribes the electronic band structure in crystals. In the absence of periodicity and the presence of quasicrystalline order, the ways that electronic states change remain a mystery. Scanning tunnelling microscopy and atomic manipulation can be used to assemble a two-dimensional quasicrystalline structure mapped upon the Penrose tiling. Here, carbon monoxide molecules are arranged on the surface of Cu(111) one at a time to form the potential landscape that mimics the ionic potential of atoms in natural materials by constraining the electrons in the two-dimensional surface state of Cu(111). The real-space images reveal the presence of the quasiperiodic order in the electronic wave functions and the Fourier analysis of our results links the energy of the resonant states to the local vertex structure of the quasicrystal.

Next-Generation Sequencing Platforms

NASA Astrophysics Data System (ADS)

Mardis, Elaine R.

2013-06-01

Automated DNA sequencing instruments embody an elegant interplay among chemistry, engineering, software, and molecular biology and have built upon Sanger's founding discovery of dideoxynucleotide sequencing to perform once-unfathomable tasks. Combined with innovative physical mapping approaches that helped to establish long-range relationships between cloned stretches of genomic DNA, fluorescent DNA sequencers produced reference genome sequences for model organisms and for the reference human genome. New types of sequencing instruments that permit amazing acceleration of data-collection rates for DNA sequencing have been developed. The ability to generate genome-scale data sets is now transforming the nature of biological inquiry. Here, I provide an historical perspective of the field, focusing on the fundamental developments that predated the advent of next-generation sequencing instruments and providing information about how these instruments work, their application to biological research, and the newest types of sequencers that can extract data from single DNA molecules.

What Do Pre-Service Physics Teachers Know and Think about Concept Mapping?

ERIC Educational Resources Information Center

Didis, Nilüfer; Özcan, Özgür; Azar, Ali

2014-01-01

In order to use concept maps in physics classes effectively, teachers' knowledge and ideas about concept mapping are as important as the physics knowledge used in mapping. For this reason, we aimed to examine pre-service physics teachers' knowledge on concept mapping, their ideas about the implementation of concept mapping in physics…

The role of long-range connectivity for the characterization of the functional-anatomical organization of the cortex.

PubMed

Knösche, Thomas R; Tittgemeyer, Marc

2011-01-01

This review focuses on the role of long-range connectivity as one element of brain structure that is of key importance for the functional-anatomical organization of the cortex. In this context, we discuss the putative guiding principles for mapping brain function and structure onto the cortical surface. Such mappings reveal a high degree of functional-anatomical segregation. Given that brain regions frequently maintain characteristic connectivity profiles and the functional repertoire of a cortical area is closely related to its anatomical connections, long-range connectivity may be used to define segregated cortical areas. This methodology is called connectivity-based parcellation. Within this framework, we investigate different techniques to estimate connectivity profiles with emphasis given to non-invasive methods based on diffusion magnetic resonance imaging (dMRI) and diffusion tractography. Cortical parcellation is then defined based on similarity between diffusion tractograms, and different clustering approaches are discussed. We conclude that the use of non-invasively acquired connectivity estimates to characterize the functional-anatomical organization of the brain is a valid, relevant, and necessary endeavor. Current and future developments in dMRI technology, tractography algorithms, and models of the similarity structure hold great potential for a substantial improvement and enrichment of the results of the technique.

Influence of long-range Coulomb interaction in velocity map imaging.

PubMed

Barillot, T; Brédy, R; Celep, G; Cohen, S; Compagnon, I; Concina, B; Constant, E; Danakas, S; Kalaitzis, P; Karras, G; Lépine, F; Loriot, V; Marciniak, A; Predelus-Renois, G; Schindler, B; Bordas, C

2017-07-07

The standard velocity-map imaging (VMI) analysis relies on the simple approximation that the residual Coulomb field experienced by the photoelectron ejected from a neutral or ion system may be neglected. Under this almost universal approximation, the photoelectrons follow ballistic (parabolic) trajectories in the externally applied electric field, and the recorded image may be considered as a 2D projection of the initial photoelectron velocity distribution. There are, however, several circumstances where this approximation is not justified and the influence of long-range forces must absolutely be taken into account for the interpretation and analysis of the recorded images. The aim of this paper is to illustrate this influence by discussing two different situations involving isolated atoms or molecules where the analysis of experimental images cannot be performed without considering long-range Coulomb interactions. The first situation occurs when slow (meV) photoelectrons are photoionized from a neutral system and strongly interact with the attractive Coulomb potential of the residual ion. The result of this interaction is the formation of a more complex structure in the image, as well as the appearance of an intense glory at the center of the image. The second situation, observed also at low energy, occurs in the photodetachment from a multiply charged anion and it is characterized by the presence of a long-range repulsive potential. Then, while the standard VMI approximation is still valid, the very specific features exhibited by the recorded images can be explained only by taking into consideration tunnel detachment through the repulsive Coulomb barrier.

Predicting Long-Term Outcomes for Women Physically Abused in Childhood: Contribution of Abuse Severity versus Family Environment

ERIC Educational Resources Information Center

Griffin, Margaret L.; Amodeo, Maryann

2010-01-01

Objective: Child physical abuse (CPA) has been associated with adverse adult psychosocial outcomes, although some reports describe minimal long-term effects. The search for the explanation for heterogeneous outcomes in women with CPA has led to an examination of a range of CPA-related factors, from the severity of CPA incidents to the childhood…

The Surface Displacement Field of the November 8, 1997, Mw7.6 Manyi (Tibet) Earthquake Observed with ERS InSAR Data

NASA Technical Reports Server (NTRS)

Peltzer, G.; Crampe, F.

1998-01-01

ERS2 radar data acquired before and after the Mw7.6, Manyi (Tibet) earthquake of November 8, 1997, provide geodetic information about the surface displacement produced by the earthquake in two ways. (1) The sub-pixel geometric adjustment of the before and after images provides a two dimensional offset field with a resolution of approx, 1m in both the range (radar line of sight) and azimuth (satellite track) directions. Comparison of offsets in azimuth and range indicates that the displacement along the fault is essentially strike-slip and in a left-lateral sense. The offset map reveals a relatively smooth and straight, N78E surface rupture that exceeds 150 km in length, consistent with the EW plane of the Harvard CMT solution. The rupture follows the trace of a quaternary fault visible on satellite imagery (Tapponnier and Molnar, 1978; Wan Der Woerd, pers. comm.). (2) Interferometric processing of the SAR data provides a range displacement map with a precision of a few millimeters. The slip distribution along the rupture reconstructed from the range change map is a bell-shaped curve in the 100-km long central section of the fault with smaller, local maxima near both ends. The curve shows that the fault slip exceeds 2.2 m in range, or 6.2 in strike-slip, along a 30-km long section of the fault and remains above 1 m in range, approx. 3 m strike-slip, along most of its length. Preliminary forward modeling of the central section of the rupture, assuming a uniform slip distribution with depth, indicates that the slip occur-red essentially between 0 and the depth of 10 km, consistent with a relatively shallow event (Velasco et al., 1998).

BAC-end sequence-based SNPs and Bin mapping for rapid integration of physical and genetic maps in apple.

PubMed

Han, Yuepeng; Chagné, David; Gasic, Ksenija; Rikkerink, Erik H A; Beever, Jonathan E; Gardiner, Susan E; Korban, Schuyler S

2009-03-01

A genome-wide BAC physical map of the apple, Malus x domestica Borkh., has been recently developed. Here, we report on integrating the physical and genetic maps of the apple using a SNP-based approach in conjunction with bin mapping. Briefly, BAC clones located at ends of BAC contigs were selected, and sequenced at both ends. The BAC end sequences (BESs) were used to identify candidate SNPs. Subsequently, these candidate SNPs were genetically mapped using a bin mapping strategy for the purpose of mapping the physical onto the genetic map. Using this approach, 52 (23%) out of 228 BESs tested were successfully exploited to develop SNPs. These SNPs anchored 51 contigs, spanning approximately 37 Mb in cumulative physical length, onto 14 linkage groups. The reliability of the integration of the physical and genetic maps using this SNP-based strategy is described, and the results confirm the feasibility of this approach to construct an integrated physical and genetic maps for apple.

Coeducational Elective Physical Education Handbook. Secondary.

ERIC Educational Resources Information Center

Boise City Independent School District, ID.

This is a handbook on coeducational elective physical education for secondary students. It begins by listing and discussing 10 objectives of elective physical education. The next section contains information on organizing the elective program including preparing the schedule, long range planning, registration, record keeping and grading, testing…

Anomalous finite-size effect due to quasidegenerate phases in triangular antiferromagnets with long-range interactions and mapping to the generalized six-state clock model

NASA Astrophysics Data System (ADS)

Nishino, Masamichi; Miyashita, Seiji

2016-11-01

The effect of long-range (LR) interactions on frustrated-spin models is an interesting problem, which provides rich ordering processes. We study the effect of LR interactions on triangular Ising antiferromagnets with the next-nearest-neighbor ferromagnetic interaction (TIAFF). In the thermodynamic limit, the LRTIAFF model should reproduce the corresponding mean-field results, in which successive phase transitions occur among various phases, i.e., the disordered paramagnetic phase, so-called partially disordered phase, three-sublattice ferrimagnetic phase, and two-sublattice ferrimagnetic phase. In the present paper we focus on the magnetic susceptibility at the transition point between the two-sublattice ferrimagnetic and the disordered paramagnetic phases at relatively large ferromagnetic interactions. In the mean-field analysis, the magnetic susceptibility shows no divergence at the transition point. In contrast, a divergencelike enhancement of the susceptibility is observed in Monte Carlo simulations in finite-size systems. We investigate the origin of this difference and find that it is attributed to a virtual degeneracy of the free energies of the partially disordered and 2-FR phases. We also exploit a generalized six-state clock model with an LR interaction, which is a more general system with Z6 symmetry. We discuss the phase diagram of this model and find that it exhibits richer transition patterns and contains the physics of the LRTIAFF model.

Assessment of LANDSAT for rangeland mapping, Rush Valley, Utah

NASA Technical Reports Server (NTRS)

Ridd, M. K.; Price, K. P.; Douglass, G. E.

1984-01-01

The feasibility of using LANDSAT MSS (multispectral scanner) data to identify and map cover types for rangeland, and to determine comparative condition of the ecotypes was assessed. A supporting objective is to assess the utility of various forms of aerial photography in the process. If rangelands can be efficiently mapped with Landsat data, as supported by appropriate aerial photography and field data, then uniform standards of cover classification and condition may be applied across the rangelands of the state. Further, a foundation may be established for long-term monitoring of range trend, using the same satellite system over time.

Equilibrium, metastability, and hysteresis in a model spin-crossover material with nearest-neighbor antiferromagnetic-like and long-range ferromagnetic-like interactions

DOE PAGES

Rikvold, Per Arne; Brown, Gregory; Miyashita, Seiji; ...

2016-02-16

Phase diagrams and hysteresis loops were obtained by Monte Carlo simulations and a mean- field method for a simplified model of a spin-crossovermaterialwith a two-step transition between the high-spin and low-spin states. This model is a mapping onto a square-lattice S = 1/2 Ising model with antiferromagnetic nearest-neighbor and ferromagnetic Husimi-Temperley ( equivalent-neighbor) long-range interactions. Phase diagrams obtained by the two methods for weak and strong long-range interactions are found to be similar. However, for intermediate-strength long-range interactions, the Monte Carlo simulations show that tricritical points decompose into pairs of critical end points and mean-field critical points surrounded by horn-shapedmore » regions of metastability. Hysteresis loops along paths traversing the horn regions are strongly reminiscent of thermal two-step transition loops with hysteresis, recently observed experimentally in several spin-crossover materials. As a result, we believe analogous phenomena should be observable in experiments and simulations for many systems that exhibit competition between local antiferromagnetic-like interactions and long-range ferromagnetic-like interactions caused by elastic distortions.« less

Quantization of geometric phase with integer and fractional topological characterization in a quantum Ising chain with long-range interaction.

PubMed

Sarkar, Sujit

2018-04-12

An attempt is made to study and understand the behavior of quantization of geometric phase of a quantum Ising chain with long range interaction. We show the existence of integer and fractional topological characterization for this model Hamiltonian with different quantization condition and also the different quantized value of geometric phase. The quantum critical lines behave differently from the perspective of topological characterization. The results of duality and its relation to the topological quantization is presented here. The symmetry study for this model Hamiltonian is also presented. Our results indicate that the Zak phase is not the proper physical parameter to describe the topological characterization of system with long range interaction. We also present quite a few exact solutions with physical explanation. Finally we present the relation between duality, symmetry and topological characterization. Our work provides a new perspective on topological quantization.

On the potential of long wavelength imaging radars for mapping vegetation types and woody biomass in tropical rain forests

NASA Technical Reports Server (NTRS)

Rignot, Eric J.; Zimmermann, Reiner; Oren, Ram

1995-01-01

In the tropical rain forests of Manu, in Peru, where forest biomass ranges from 4 kg/sq m in young forest succession up to 100 kg/sq m in old, undisturbed floodplain stands, the P-band polarimetric radar data gathered in June of 1993 by the AIRSAR (Airborne Synthetic Aperture Radar) instrument separate most major vegetation formations and also perform better than expected in estimating woody biomass. The worldwide need for large scale, updated biomass estimates, achieved with a uniformly applied method, as well as reliable maps of land cover, justifies a more in-depth exploration of long wavelength imaging radar applications for tropical forests inventories.

A study of kindergarten children's spatial representation in a mapping project

NASA Astrophysics Data System (ADS)

Davis, Genevieve A.; Hyun, Eunsook

2005-02-01

This phenomenological study examined kindergarten children's development of spatial representation in a year long mapping project. Findings and discussion relative to how children conceptualised and represented physical space are presented in light of theoretical notions advanced by Piaget, van Hiele, and cognitive science researchers Battista and Clements. Analyses of the processes the children used and their finished products indicate that children can negotiate meaning for complex systems of geometric concepts when given opportunities to debate, negotiate, reflect, evaluate and seek meaning for representing space. The complexity and "holistic" nature of spatial representation of young children emerged in this study.

Strain screen and haplotype association mapping of wheel running in inbred mouse strains.

PubMed

Lightfoot, J Timothy; Leamy, Larry; Pomp, Daniel; Turner, Michael J; Fodor, Anthony A; Knab, Amy; Bowen, Robert S; Ferguson, David; Moore-Harrison, Trudy; Hamilton, Alicia

2010-09-01

Previous genetic association studies of physical activity, in both animal and human models, have been limited in number of subjects and genetically homozygous strains used as well as number of genomic markers available for analysis. Expansion of the available mouse physical activity strain screens and the recently published dense single-nucleotide polymorphism (SNP) map of the mouse genome (approximately 8.3 million SNPs) and associated statistical methods allowed us to construct a more generalizable map of the quantitative trait loci (QTL) associated with physical activity. Specifically, we measured wheel running activity in male and female mice (average age 9 wk) in 41 inbred strains and used activity data from 38 of these strains in a haplotype association mapping analysis to determine QTL associated with activity. As seen previously, there was a large range of activity patterns among the strains, with the highest and lowest strains differing significantly in daily distance run (27.4-fold), duration of activity (23.6-fold), and speed (2.9-fold). On a daily basis, female mice ran further (24%), longer (13%), and faster (11%). Twelve QTL were identified, with three (on Chr. 12, 18, and 19) in both male and female mice, five specific to males, and four specific to females. Eight of the 12 QTL, including the 3 general QTL found for both sexes, fell into intergenic areas. The results of this study further support the findings of a moderate to high heritability of physical activity and add general genomic areas applicable to a large number of mouse strains that can be further mined for candidate genes associated with regulation of physical activity. Additionally, results suggest that potential genetic mechanisms arising from traditional noncoding regions of the genome may be involved in regulation of physical activity.

Coulombic charge ice

NASA Astrophysics Data System (ADS)

McClarty, P. A.; O'Brien, A.; Pollmann, F.

2014-05-01

We consider a classical model of charges ±q on a pyrochlore lattice in the presence of long-range Coulomb interactions. This model first appeared in the early literature on charge order in magnetite [P. W. Anderson, Phys. Rev. 102, 1008 (1956), 10.1103/PhysRev.102.1008]. In the limit where the interactions become short ranged, the model has a ground state with an extensive entropy and dipolar charge-charge correlations. When long-range interactions are introduced, the exact degeneracy is broken. We study the thermodynamics of the model and show the presence of a correlated charge liquid within a temperature window in which the physics is well described as a liquid of screened charged defects. The structure factor in this phase, which has smeared pinch points at the reciprocal lattice points, may be used to detect charge ice experimentally. In addition, the model exhibits fractionally charged excitations ±q/2 which are shown to interact via a 1/r potential. At lower temperatures, the model exhibits a transition to a long-range ordered phase. We are able to treat the Coulombic charge ice model and the dipolar spin ice model on an equal footing by mapping both to a constrained charge model on the diamond lattice. We find that states of the two ice models are related by a staggering field which is reflected in the energetics of these two models. From this perspective, we can understand the origin of the spin ice and charge ice ground states as coming from a dipolar model on a diamond lattice. We study the properties of charge ice in an external electric field, finding that the correlated liquid is robust to the presence of a field in contrast to the case of spin ice in a magnetic field. Finally, we comment on the transport properties of Coulombic charge ice in the correlated liquid phase.

Mapping Pluto Broken Heart

NASA Image and Video Library

2015-10-29

In addition to transmitting new high-resolution images and other data on the familiar close-approach hemispheres of Pluto and Charon, NASA's New Horizons spacecraft is also returning images -- such as this one -- to improve maps of other regions. This image was taken by the New Horizons Long Range Reconnaissance Imager (LORRI) on the morning of July 13, 2015, from a range of 1.03 million miles (1.7 million kilometers) and has a resolution of 5.1 miles (8.3 kilometers) per pixel. It provides fascinating new details to help the science team map the informally named Krun Macula (the prominent dark spot at the bottom of the image) and the complex terrain east and northeast of Pluto's "heart" (Tombaugh Regio). Pluto's north pole is on the planet's disk at the 12 o'clock position of this image. http://photojournal.jpl.nasa.gov/catalog/PIA20037

Evaluation of High Dynamic Range Photography as a Luminance Mapping Technique

DOE Office of Scientific and Technical Information (OSTI.GOV)

Inanici, Mehlika; Galvin, Jim

2004-12-30

The potential, limitations, and applicability of the High Dynamic Range (HDR) photography technique is evaluated as a luminance mapping tool. Multiple exposure photographs of static scenes are taken with a Nikon 5400 digital camera to capture the wide luminance variation within the scenes. The camera response function is computationally derived using the Photosphere software, and is used to fuse the multiple photographs into HDR images. The vignetting effect and point spread function of the camera and lens system is determined. Laboratory and field studies have shown that the pixel values in the HDR photographs can correspond to the physical quantitymore » of luminance with reasonable precision and repeatability.« less

Doppler synthetic aperture radar interferometry: a novel SAR interferometry for height mapping using ultra-narrowband waveforms

NASA Astrophysics Data System (ADS)

Yazıcı, Birsen; Son, Il-Young; Cagri Yanik, H.

2018-05-01

This paper introduces a new and novel radar interferometry based on Doppler synthetic aperture radar (Doppler-SAR) paradigm. Conventional SAR interferometry relies on wideband transmitted waveforms to obtain high range resolution. Topography of a surface is directly related to the range difference between two antennas configured at different positions. Doppler-SAR is a novel imaging modality that uses ultra-narrowband continuous waves (UNCW). It takes advantage of high resolution Doppler information provided by UNCWs to form high resolution SAR images. We introduce the theory of Doppler-SAR interferometry. We derive an interferometric phase model and develop the equations of height mapping. Unlike conventional SAR interferometry, we show that the topography of a scene is related to the difference in Doppler frequency between two antennas configured at different velocities. While the conventional SAR interferometry uses range, Doppler and Doppler due to interferometric phase in height mapping; Doppler-SAR interferometry uses Doppler, Doppler-rate and Doppler-rate due to interferometric phase in height mapping. We demonstrate our theory in numerical simulations. Doppler-SAR interferometry offers the advantages of long-range, robust, environmentally friendly operations; low-power, low-cost, lightweight systems suitable for low-payload platforms, such as micro-satellites; and passive applications using sources of opportunity transmitting UNCW.

Cellular self-organization by autocatalytic alignment feedback

PubMed Central

Junkin, Michael; Leung, Siu Ling; Whitman, Samantha; Gregorio, Carol C.; Wong, Pak Kin

2011-01-01

Myoblasts aggregate, differentiate and fuse to form skeletal muscle during both embryogenesis and tissue regeneration. For proper muscle function, long-range self-organization of myoblasts is required to create organized muscle architecture globally aligned to neighboring tissue. However, how the cells process geometric information over distances considerably longer than individual cells to self-organize into well-ordered, aligned and multinucleated myofibers remains a central question in developmental biology and regenerative medicine. Using plasma lithography micropatterning to create spatial cues for cell guidance, we show a physical mechanism by which orientation information can propagate for a long distance from a geometric boundary to guide development of muscle tissue. This long-range alignment occurs only in differentiating myoblasts, but not in non-fusing myoblasts perturbed by microfluidic disturbances or other non-fusing cell types. Computational cellular automata analysis of the spatiotemporal evolution of the self-organization process reveals that myogenic fusion in conjunction with rotational inertia functions in a self-reinforcing manner to enhance long-range propagation of alignment information. With this autocatalytic alignment feedback, well-ordered alignment of muscle could reinforce existing orientations and help promote proper arrangement with neighboring tissue and overall organization. Such physical self-enhancement might represent a fundamental mechanism for long-range pattern formation during tissue morphogenesis. PMID:22193956

Martian Resource Locations - Identification and Optimization

NASA Astrophysics Data System (ADS)

Chamitoff, G.; James, G.; Barker, D.; Dershowitz, A.

2002-01-01

Many physical constituents of the Martian environment can be considered as possible material resources. The identification and utilization of these in-situ Martian natural resources is the key to enabling cost- effective long-duration missions and permanent human settlements on Mars. Also, access to local resources provides an essential safety net for the initial missions. The incident solar radiation, atmosphere, regolith, subsurface materials, polar deposits, and frozen volatiles represent planetary resources that can provide breathable air, water, energy, organic growth media, and building materials. Hence, the characterization and localization of these resources can be viewed as a component of the process of landing/outpost site selection. The locations of early permanent settlements will likely be near the imported and in-situ resources of the initial outposts. Therefore, the initial site selections can have significant long- term ramifications. Although the current information on the location, extent, purity, and ease of extraction of the in-situ resources is limited; this knowledge improves with each electronic bit of information returned from the planet. This paper presents a powerful software tool for the combined organization and analysis of Martian data from all sources. This program, called PROMT (Planetary Resource Optimization and Mapping Tool), is designed to provide a wide range of analysis and display functions that can be applied to raw data or photo- imagery. Thresholds, contours, custom algorithms, and graphical editing are some of the various methods that the user can use to process data. Individual maps can then be created to identify surface regions on Mars that meet specific criteria. For example, regions with possible subsurface ice can be identified and shown graphically by combining and analyzing various gamma ray and neutron emission data sets. Other examples might include regions with high atmospheric pressure, steep slopes, evidence of geothermal activity, surface albedo variations in a certain spectral range, similar average temperatures, surface flow features, high gravitational anomalies, etc. Surface maps can similarly be created to highlight regions of interest based on virtually any mathematical or remote sensing criteria. These maps can then be combined into composite maps for the purpose of collocating resources, surface features, and other scientific qualities of interest. Finally, PROMT has the capability to optimize the selection of potential landing/outpost sites based on a weighted combination of selected intermediate maps and data sets. This is done by searching the Martian surface for the point that maximizes accessibility to collocated features within a given radius. The use of this tool for analyzing data, generating maps, and collocating features is demonstrated using data from the Mariner, Viking, Hubble, Mars Global Surveyor, and the Odyssey spacecraft. The process of site selection is demonstrated through the combination of analyses performed to identify local resources for producing breathable air, water, and energy. However, any number of site selection objectives could be studied using PROMT. Some examples might be the search for life, water on Mars, geological features, weather observation, survivability of a human base, and so on. In this paper, a mission design objective of outpost self-sufficiency based on the accessibility of useful local materials is presented. Future studies can address a broad range of overall mission design objectives and can incorporate additional planetary data sets as they become available. These studies can be used to drive technology developments, mission planning, analog simulations, as well as precursor missions.

Using optical mapping data for the improvement of vertebrate genome assemblies.

PubMed

Howe, Kerstin; Wood, Jonathan M D

2015-01-01

Optical mapping is a technology that gathers long-range information on genome sequences similar to ordered restriction digest maps. Because it is not subject to cloning, amplification, hybridisation or sequencing bias, it is ideally suited to the improvement of fragmented genome assemblies that can no longer be improved by classical methods. In addition, its low cost and rapid turnaround make it equally useful during the scaffolding process of de novo assembly from high throughput sequencing reads. We describe how optical mapping has been used in practice to produce high quality vertebrate genome assemblies. In particular, we detail the efforts undertaken by the Genome Reference Consortium (GRC), which maintains the reference genomes for human, mouse, zebrafish and chicken, and uses different optical mapping platforms for genome curation.

MAPS OF THE MAGELLANIC CLOUDS FROM COMBINED SOUTH POLE TELESCOPE AND PLANCK DATA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, T. M.; Benson, B. A.; Bleem, L. E.

We present maps of the Large and Small Magellanic Clouds from combined South Pole Telescope (SPT) and Planck data. The Planck satellite observes in nine bands, while the SPT data used in this work were taken with the three-band SPT-SZ camera, The SPT-SZ bands correspond closely to three of the nine Planck bands, namely those centered at 1.4, 2.1, and 3.0 mm. The angular resolution of the Planck data ranges from 5 to 10 arcmin, while the SPT resolution ranges from 1.0 to 1.7 arcmin. The combined maps take advantage of the high resolution of the SPT data and themore » long-timescale stability of the space-based Planck observations to deliver robust brightness measurements on scales from the size of the maps down to ∼1 arcmin. In each band, we first calibrate and color-correct the SPT data to match the Planck data, then we use noise estimates from each instrument and knowledge of each instrument’s beam to make the inverse-variance-weighted combination of the two instruments’ data as a function of angular scale. We create maps assuming a range of underlying emission spectra and at a range of final resolutions. We perform several consistency tests on the combined maps and estimate the expected noise in measurements of features in them. We compare maps from this work to those from the Herschel HERITAGE survey, finding general consistency between the data sets. All data products described in this paper are available for download from the NASA Legacy Archive for Microwave Background Data Analysis server.« less

[Physical mapping of the genes px and cld coding peroxidase and cold-regulated protein in maize (Zea mays L.)].

PubMed

Ning, S B; Wang, L; Song, Y C

2000-01-01

Peroxidase plays a key role in plant disease resistance, cold stress and some developmental processes, and cold-regulated protein functions necessarily in reaction of plants on cold or heat stress. Recent studies showed that these processes in plant cells were involved in programmed cell death (PCD). Using a biotin-labelled in situ hybridization (ISH) technique, we physically mapped the genes px and cld coding peroxidase and cold-regulated protein respectively onto maize chromosomes. Both DAB and fluorescence detection systems gave the identical results, the probe uaz235 corresponding to gene px was localized onto the long arm of chromosome 2 (2L) and 7L, and csu19 corresponding to gene cld was hybridized onto 4L and 5L. The percentage distances (from the hybridization sites to centromeres) of uaz235 in 2L and 7L were 45.4 +/- 1.3 and 67.4 +/- 3.7 respectively, and those of csu19 in 4L and 5L were 68.6 +/- 2.6 and 58.2 +/- 1.6 respectively. The physical positions of px in 2L and cld in 4L coincide with those in their genetic map pattern. The results also show that both of these genes have duplicated sites in maize genome.

Fast-cycling superconducting synchrotrons and possible path to the future of US experimental high-energy particle physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Piekarz, Henryk; /Fermilab

The authors outline primary physics motivation, present proposed new arrangement for Fermilab accelerator complex, and then discuss possible long-range application of fast-cycling superconducting synchrotrons at Fermilab.

Maps of the Magellanic clouds from combined South Pole Telescope and Planck data

DOE PAGES

Crawford, T. M.; Chown, R.; Holder, G. P.; ...

2016-12-09

Here, we present maps of the Large and Small Magellanic Clouds from combined South Pole Telescope (SPT) and Planck data. Both instruments are designed to make measurements of the cosmic microwave background but are sensitive to any source of millimeter-wave (mm-wave) emission. The Planck satellite observes in nine mm-wave bands, while the SPT data used in this work were taken with the three-band SPT-SZ camera. The SPT-SZ bands correspond closely to three of the nine Planck bands, namely those centered at 1.4, 2.1, and 3.0 mm. The angular resolution of the Planck data in these bands ranges from 5 tomore » 10 arcmin, while the SPT resolution in these bands ranges from 1.0 to 1.7 arcmin. The combined maps take advantage of the high resolution of the SPT data and the long-timescale stability of the space-based Planck observations to deliver high signal-to-noise and robust brightness measurements on scales from the size of the maps down to ~1 arcmin. In each of the three bands, we first calibrate and color-correct the SPT data to match the Planck data, then we use noise estimates from each instrument and knowledge of each instrument's beam, or point-spread function, to make the inverse-variance-weighted combination of the two instruments' data as a function of angular scale. Furthermore, we create maps assuming a range of underlying emission spectra (for the color correction) and at a range of final resolutions. We perform several consistency tests on the combined maps and estimate the expected noise in measurements of features in the maps. Finally, we compare the maps of the Large Magellanic Cloud (LMC) from this work to maps from the Herschel HERITAGE survey, finding general consistency between the datasets. Furthermore, the broad wavelength coverage provides evidence of different emission mechanisms at work in different environments in the LMC.« less

Reflections on a lifetime of collecting germplasm – a childhood dream realized

USDA-ARS?s Scientific Manuscript database

The importance of taxonomic monographs in all areas of plant biology, ranging from ecology, to biodiversity conservation, to breeding has long been known. The keys, illustrations, descriptions, localities, habitat data, distribution maps, synonymies, cytological and molecular data, and hypotheses of...

Geometry-induced phase transition in fluids: Capillary prewetting

NASA Astrophysics Data System (ADS)

Yatsyshin, Petr; Savva, Nikos; Kalliadasis, Serafim

2013-02-01

We report a new first-order phase transition preceding capillary condensation and corresponding to the discontinuous formation of a curved liquid meniscus. Using a mean-field microscopic approach based on the density functional theory we compute the complete phase diagram of a prototypical two-dimensional system exhibiting capillary condensation, namely that of a fluid with long-ranged dispersion intermolecular forces which is spatially confined by a substrate forming a semi-infinite rectangular pore exerting long-ranged dispersion forces on the fluid. In the T-μ plane the phase line of the new transition is tangential to the capillary condensation line at the capillary wetting temperature Tcw. The surface phase behavior of the system maps to planar wetting with the phase line of the new transition, termed capillary prewetting, mapping to the planar prewetting line. If capillary condensation is approached isothermally with T>Tcw, the meniscus forms at the capping wall and unbinds continuously, making capillary condensation a second-order phenomenon. We compute the corresponding critical exponent for the divergence of adsorption.

Spectroscopic mapping of the physical properties of supernova remnant N 49

NASA Astrophysics Data System (ADS)

Pauletti, D.; Copetti, M. V. F.

2016-10-01

Context. Physical conditions inside a supernova remnant can vary significantly between different positions. However, typical observational data of supernova remnants are integrated data or contemplate specific portions of the remnant. Aims: We study the spatial variation in the physical properties of the N 49 supernova remnant based on a spectroscopic mapping of the whole nebula. Methods: Long-slit spectra were obtained with the slit (~4' × 1.03″) aligned along the east-west direction from 29 different positions spaced by 2″ in declination. A total of 3248 1D spectra were extracted from sections of 2″ of the 2D spectra. More than 60 emission lines in the range 3550 Å to 8920 Å were measured in these spectra. Maps of the fluxes and of intensity ratios of these emission lines were built with a spatial resolution of 2″ × 2″. Results: An electron density map has been obtained using the [S II] λ6716 /λ6731 line ratio. Values vary from ~500 cm-3 at the northeast region to more than 3500 cm-3 at the southeast border. We calculated the electron temperature using line ratio sensors for the ions S+, O++, O+, and N+. Values are about 3.6 × 104 K for the O++ sensor and about 1.1 × 104 K for other sensors. The Hα/Hβ ratio map presents a ring structure with higher values that may result from collisional excitation of hydrogen. We detected an area with high values of [N II] λ6583/Hα extending from the remnant center to its northeastern border, which may be indicating an overabundance of nitrogen in the area due to contamination by the progenitor star. We found a radial dependence in many line intensity ratio maps. We observed an increase toward the remnant borders of the intensity ratio of any two lines in which the numerator comes before in the sequence [O III] λ5007, [O III] λ4363, [Ar III] λ7136, [Ne III] λ3869, [O II] λ7325, [O II] λ3727, He II λ4686, Hβ λ4861, [N II] λ6583, He I λ6678, [S II] λ6731, [S II] λ6716, [O I] λ6300, [Ca II] λ7291, Ca II λ3934, and [N I] λ5199. Based on observations obtained at the Southern Astrophysical Research (SOAR) telescope, which is a joint project of the Ministério da Ciência, Tecnologia, e Inovação (MCTI) da República Federativa do Brasil, the US National Optical Astronomy Observatory (NOAO), the University of North Carolina at Chapel Hill (UNC), and Michigan State University (MSU).Maps as FITS files are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/595/A10

Coastal vulnerability assessment of Olympic National Park to sea-level rise

USGS Publications Warehouse

Pendleton, Elizabeth A.; Hammar-Klose, Erika S.; Thieler, E. Robert; Williams, S. Jeffress

2004-01-01

A coastal vulnerability index (CVI) was used to map the relative vulnerability of the coast to future sea-level rise within Olympic National Park (OLYM), Washington. The CVI scores the following in terms of their physical contribution to sea-level rise-related coastal change: geomorphology, regional coastal slope, rate of relative sea-level rise, shoreline change rates, mean tidal range and mean wave height. The rankings for each variable were combined and an index value calculated for 1-minute grid cells covering the park. The CVI highlights those regions where the physical effects of sea-level rise might be the greatest. This approach combines the coastal system's susceptibility to change with its natural ability to adapt to changing environmental conditions, yielding a quantitative, although relative, measure of the park's natural vulnerability to the effects of sea-level rise. The CVI provides an objective technique for evaluation and long-term planning by scientists and park managers. The Olympic National Park coast consists of rocky headlands, pocket beaches, glacial-fluvial features, and sand and gravel beaches. The Olympic coastline that is most vulnerable to sea-level rise are beaches in gently sloping areas.

Forecasting inundation from debris flows that grow during travel, with application to the Oregon Coast Range, USA

USGS Publications Warehouse

Reid, Mark E.; Coe, Jeffrey A.; Brien, Dianne

2016-01-01

Many debris flows increase in volume as they travel downstream, enhancing their mobility and hazard. Volumetric growth can result from diverse physical processes, such as channel sediment entrainment, stream bank collapse, adjacent landsliding, hillslope erosion and rilling, and coalescence of multiple debris flows; incorporating these varied phenomena into physics-based debris-flow models is challenging. As an alternative, we embedded effects of debris-flow growth into an empirical/statistical approach to forecast potential inundation areas within digital landscapes in a GIS framework. Our approach used an empirical debris-growth function to account for the effects of growth phenomena. We applied this methodology to a debris-flow-prone area in the Oregon Coast Range, USA, where detailed mapping revealed areas of erosion and deposition along paths of debris flows that occurred during a large storm in 1996. Erosion was predominant in stream channels with slopes > 5°. Using pre- and post-event aerial photography, we derived upslope contributing area and channel-length growth factors. Our method reproduced the observed inundation patterns produced by individual debris flows; it also generated reproducible, objective potential inundation maps for entire drainage networks. These maps better matched observations than those using previous methods that focus on proximal or distal regions of a drainage network.

Normalizing rainfall/debris-flow thresholds along the U.S. Pacific coast for long-term variations in precipitation climate

USGS Publications Warehouse

Wilson, Raymond C.

1997-01-01

Broad-scale variations in long-term precipitation climate may influence rainfall/debris-flow threshold values along the U.S. Pacific coast, where both the mean annual precipitation (MAP) and the number of rainfall days (#RDs) are controlled by topography, distance from the coastline, and geographic latitude. Previous authors have proposed that rainfall thresholds are directly proportional to MAP, but this appears to hold only within limited areas (< 1?? latitude), where rainfall frequency (#RDs) is nearly constant. MAP-normalized thresholds underestimate the critical rainfall when applied to areas to the south, where the #RDs decrease, and overestimate threshold rainfall when applied to areas to the north, where the #RDs increase. For normalization between climates where both MAP and #RDs vary significantly, thresholds may best be described as multiples of the rainy-day normal, RDN = MAP/#RDs. Using data from several storms that triggered significant debris-flow activity in southern California, the San Francisco Bay region, and the Pacific Northwest, peak 24-hour rainfalls were plotted against RDN values, displaying a linear relationship with a lower bound at about 14 RDN. RDN ratios in this range may provide a threshold for broad-scale regional forecasting of debris-flow activity.

Aging and functional brain networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tomasi D.; Tomasi, D.; Volkow, N.D.

2011-07-11

Aging is associated with changes in human brain anatomy and function and cognitive decline. Recent studies suggest the aging decline of major functional connectivity hubs in the 'default-mode' network (DMN). Aging effects on other networks, however, are largely unknown. We hypothesized that aging would be associated with a decline of short- and long-range functional connectivity density (FCD) hubs in the DMN. To test this hypothesis, we evaluated resting-state data sets corresponding to 913 healthy subjects from a public magnetic resonance imaging database using functional connectivity density mapping (FCDM), a voxelwise and data-driven approach, together with parallel computing. Aging was associatedmore » with pronounced long-range FCD decreases in DMN and dorsal attention network (DAN) and with increases in somatosensory and subcortical networks. Aging effects in these networks were stronger for long-range than for short-range FCD and were also detected at the level of the main functional hubs. Females had higher short- and long-range FCD in DMN and lower FCD in the somatosensory network than males, but the gender by age interaction effects were not significant for any of the networks or hubs. These findings suggest that long-range connections may be more vulnerable to aging effects than short-range connections and that, in addition to the DMN, the DAN is also sensitive to aging effects, which could underlie the deterioration of attention processes that occurs with aging.« less

The TensorMol-0.1 model chemistry: a neural network augmented with long-range physics.

PubMed

Yao, Kun; Herr, John E; Toth, David W; Mckintyre, Ryker; Parkhill, John

2018-02-28

Traditional force fields cannot model chemical reactivity, and suffer from low generality without re-fitting. Neural network potentials promise to address these problems, offering energies and forces with near ab initio accuracy at low cost. However a data-driven approach is naturally inefficient for long-range interatomic forces that have simple physical formulas. In this manuscript we construct a hybrid model chemistry consisting of a nearsighted neural network potential with screened long-range electrostatic and van der Waals physics. This trained potential, simply dubbed "TensorMol-0.1", is offered in an open-source Python package capable of many of the simulation types commonly used to study chemistry: geometry optimizations, harmonic spectra, open or periodic molecular dynamics, Monte Carlo, and nudged elastic band calculations. We describe the robustness and speed of the package, demonstrating its millihartree accuracy and scalability to tens-of-thousands of atoms on ordinary laptops. We demonstrate the performance of the model by reproducing vibrational spectra, and simulating the molecular dynamics of a protein. Our comparisons with electronic structure theory and experimental data demonstrate that neural network molecular dynamics is poised to become an important tool for molecular simulation, lowering the resource barrier to simulating chemistry.

Show Me The Data! Data Visualizations Make Climate Change & Climate Impacts Real

NASA Astrophysics Data System (ADS)

Turrin, M.; Ryan, W. B. F.; Porter, D. F.

2016-12-01

Today's learner is technology proficient. Whether we reference K12, undergraduate, or life long learners we expect that they are not only comfortable interacting with a range of digital media, from computer, to tablet, to a smart phone, but that they expect it. Technology is a central part of how most of us spend large portions of our day; connecting, communicating, recreating and learning. So why would we expect that today's learners would prefer to read about climate change and climate impacts from plain text? As educators we must embrace cutting edge methods and materials to engage our students and learners, meeting them where they are most comfortable. `Polar Explorer: Sea Level' is an app that uses interactive data maps to engage the users in the story of changing sea level. Designed for a general audience this free app (http://www.polarexplorer.org) is a great resource for life-long learners, teachers, students and the curious public. Built around a series of questions that are structured like book chapters, users select from a range of choices like: What is sea level? Why does sea level change? Where is it changing now? What about the polar regions? What about in the past? Who is vulnerable? Each section moves the user through layers of maps that address causes, impacts, future predictions and special vulnerabilities of a rising sea level. Users can select any pathway to build a story that captures their attention as they interact with the data and move through different layers of the app. Each map is interactive and supported by information 'snippits', audio clips and a link to further information. A series of `quests' are available for the app. Each quest is a story with a main science theme at its center that leads a planned excursion through a series of map layers while revealing a story in the data. The combination of physical science in what and where is sea level changing, with human impacts in the `who is vulnerable', builds a series of stories with a personal connection for the app user. Follow a quest to learn why sea level is falling on the Scandinavian coastline, or where you would find the highest mountain peak in Greenland or Antarctica. Users are encouraged to create their own quests and submit them to a shared repository. This app was developed as part of the PoLAR partnership supported by NSF (DUE-1239783).

Model-Mapped RPA for Determining the Effective Coulomb Interaction

NASA Astrophysics Data System (ADS)

Sakakibara, Hirofumi; Jang, Seung Woo; Kino, Hiori; Han, Myung Joon; Kuroki, Kazuhiko; Kotani, Takao

2017-04-01

We present a new method to obtain a model Hamiltonian from first-principles calculations. The effective interaction contained in the model is determined on the basis of random phase approximation (RPA). In contrast to previous methods such as projected RPA and constrained RPA (cRPA), the new method named "model-mapped RPA" takes into account the long-range part of the polarization effect to determine the effective interaction in the model. After discussing the problems of cRPA, we present the formulation of the model-mapped RPA, together with a numerical test for the single-band Hubbard model of HgBa2CuO4.

Putting Pluto's Geology on the Map

NASA Image and Video Library

2016-02-11

This geological map covers a portion of Pluto's surface that measures 1,290 miles (2,070 kilometers) from top to bottom, and includes the vast nitrogen-ice plain informally named Sputnik Planum and surrounding terrain. The map is overlain with colors that represent different geological terrains. Each terrain, or unit, is defined by its texture and morphology -- smooth, pitted, craggy, hummocky or ridged, for example. How well a unit can be defined depends on the resolution of the images that cover it. All of the terrain in this map has been imaged at a resolution of approximately 1,050 feet (320 meters) per pixel or better, meaning scientists can map units with relative confidence. The various blue and greenish units that fill the center of the map represent different textures seen across Sputnik Planum, from the cellular terrain in the center and north, to the smooth and pitted plains in the south. The black lines represent the troughs that mark the boundaries of cellular regions in the nitrogen ice. The purple unit represents the chaotic, blocky mountain ranges that line Sputnik's western border, and the pink unit represents the scattered, floating hills at its eastern edge. The possible cryovolcanic feature informally named Wright Mons is mapped in red in the southern corner of the map. The rugged highlands of the informally named Cthulhu Regio is mapped in dark brown along the western edge, and is pockmarked by many large impact craters, mapped in yellow. The base map for this geologic map is a mosaic of 12 images obtained by the Long Range Reconnaissance Imager (LORRI) at a resolution of 1,280 feet (about 390 meters) per pixel. The mosaic was obtained at a range of approximately 48,000 miles (77,300 kilometers) from Pluto, about an hour and 40 minutes before New Horizons' closest approach on July 14, 2015. http://photojournal.jpl.nasa.gov/catalog/PIA20465

Bounds on Energy Absorption and Prethermalization in Quantum Systems with Long-Range Interactions

NASA Astrophysics Data System (ADS)

Ho, Wen Wei; Protopopov, Ivan; Abanin, Dmitry A.

2018-05-01

Long-range interacting systems such as nitrogen vacancy centers in diamond and trapped ions serve as experimental setups to probe a range of nonequilibrium many-body phenomena. In particular, via driving, various effective Hamiltonians with physics potentially quite distinct from short-range systems can be realized. In this Letter, we derive general rigorous bounds on the linear response energy absorption rates of periodically driven systems of spins or fermions with long-range interactions that are sign changing and fall off as 1 /rα with α >d /2 . We show that the disorder averaged energy absorption rate at high temperatures decays exponentially with the driving frequency. This strongly suggests the presence of a prethermal plateau in which dynamics is governed by an effective, static Hamiltonian for long times, and we provide numerical evidence to support such a statement. Our results are relevant for understanding timescales of heating and new dynamical regimes described by effective Hamiltonians in such long-range systems.

78 FR 72058 - Endangered and Threatened Wildlife and Plants; Listing the Northern Long-Eared Bat as an...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-02

... the northern long-eared bat concerning: (1) The species' biology, range, and population trends... currently occupied and that contain the physical and biological features essential to the conservation of...

An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research

PubMed Central

Febrer, Melanie; Goicoechea, Jose Luis; Wright, Jonathan; McKenzie, Neil; Song, Xiang; Lin, Jinke; Collura, Kristi; Wissotski, Marina; Yu, Yeisoo; Ammiraju, Jetty S. S.; Wolny, Elzbieta; Idziak, Dominika; Betekhtin, Alexander; Kudrna, Dave; Hasterok, Robert; Wing, Rod A.; Bevan, Michael W.

2010-01-01

The pooid subfamily of grasses includes some of the most important crop, forage and turf species, such as wheat, barley and Lolium. Developing genomic resources, such as whole-genome physical maps, for analysing the large and complex genomes of these crops and for facilitating biological research in grasses is an important goal in plant biology. We describe a bacterial artificial chromosome (BAC)-based physical map of the wild pooid grass Brachypodium distachyon and integrate this with whole genome shotgun sequence (WGS) assemblies using BAC end sequences (BES). The resulting physical map contains 26 contigs spanning the 272 Mb genome. BES from the physical map were also used to integrate a genetic map. This provides an independent vaildation and confirmation of the published WGS assembly. Mapped BACs were used in Fluorescence In Situ Hybridisation (FISH) experiments to align the integrated physical map and sequence assemblies to chromosomes with high resolution. The physical, genetic and cytogenetic maps, integrated with whole genome shotgun sequence assemblies, enhance the accuracy and durability of this important genome sequence and will directly facilitate gene isolation. PMID:20976139

Physical-Chemical Properties of Articulated Rodlike Polymers

DTIC Science & Technology

1984-04-01

poly-lysine have shown an ’ordinary to extraordinary’ transition where long range forces are postulated to create a lattice -like structure between...concentrations, the scattering moieties are held in a pseudo- lattice order, As the concentration increases, the 57 effects of excluded volume become...were intermolecular since the chains were already fully extended. The long range nature of the electrostatic interactions created a pseudo- lattice

Wave height data assimilation using non-stationary kriging

NASA Astrophysics Data System (ADS)

Tolosana-Delgado, R.; Egozcue, J. J.; Sáchez-Arcilla, A.; Gómez, J.

2011-03-01

Data assimilation into numerical models should be both computationally fast and physically meaningful, in order to be applicable in online environmental surveillance. We present a way to improve assimilation for computationally intensive models, based on non-stationary kriging and a separable space-time covariance function. The method is illustrated with significant wave height data. The covariance function is expressed as a collection of fields: each one is obtained as the empirical covariance between the studied property (significant wave height in log-scale) at a pixel where a measurement is located (a wave-buoy is available) and the same parameter at every other pixel of the field. These covariances are computed from the available history of forecasts. The method provides a set of weights, that can be mapped for each measuring location, and that do not vary with time. Resulting weights may be used in a weighted average of the differences between the forecast and measured parameter. In the case presented, these weights may show long-range connection patterns, such as between the Catalan coast and the eastern coast of Sardinia, associated to common prevailing meteo-oceanographic conditions. When such patterns are considered as non-informative of the present situation, it is always possible to diminish their influence by relaxing the covariance maps.

Physical location of the carotenoid biosynthesis genes Psy and β-Lcy in Capsicum annuum (Solanaceae) using heterologous probes from Citrus sinensis (Rutaceae).

PubMed

Andrade-Souza, V; Costa, M G C; Chen, C X; Gmitter, F G; Costa, M A

2011-03-09

Carotenoids are responsible for a range of fruit colors in different hot pepper (Capsicum) varieties, from white to deep red. Color traits are genetically determined by three loci, Y, C1, and C2, which are associated with carotenogenic genes. Although such genes have been localized on genetic maps of Capsicum and anchored in Lycopersicon and Solanum, physical mapping in Capsicum has been restricted to only a few clusters of some multiple copy genes. Heterologous probes from single copy genes have been rarely used. Fluorescent in situ hybridization was performed in Capsicum annuum varieties with different fruit colors, using heterologous probes of Psy and β-Lcy genes obtained from a BAC library of the sweet orange (Citrus sinensis). The probes hybridized in the terminal portion of a chromosome pair, confirming the location of these genes in genetic maps. The hybridized segments showed variation in size in both chromosomes.

Probing New Long-Range Interactions by Isotope Shift Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berengut, Julian C.; Budker, Dmitry; Delaunay, Cédric

We explore a method to probe new long- and intermediate-range interactions using precision atomic isotope shift spectroscopy. We develop a formalism to interpret linear King plots as bounds on new physics with minimal theory inputs. We focus only on bounding the new physics contributions that can be calculated independently of the standard model nuclear effects. We apply our method to existing Ca + data and project its sensitivity to conjectured new bosons with spin-independent couplings to the electron and the neutron using narrow transitions in other atoms and ions, specifically, Sr and Yb. Future measurements are expected to improve themore » relative precision by 5 orders of magnitude, and they can potentially lead to an unprecedented sensitivity for bosons within the 0.3 to 10 MeV mass range.« less

Probing New Long-Range Interactions by Isotope Shift Spectroscopy.

PubMed

Berengut, Julian C; Budker, Dmitry; Delaunay, Cédric; Flambaum, Victor V; Frugiuele, Claudia; Fuchs, Elina; Grojean, Christophe; Harnik, Roni; Ozeri, Roee; Perez, Gilad; Soreq, Yotam

2018-03-02

We explore a method to probe new long- and intermediate-range interactions using precision atomic isotope shift spectroscopy. We develop a formalism to interpret linear King plots as bounds on new physics with minimal theory inputs. We focus only on bounding the new physics contributions that can be calculated independently of the standard model nuclear effects. We apply our method to existing Ca^{+} data and project its sensitivity to conjectured new bosons with spin-independent couplings to the electron and the neutron using narrow transitions in other atoms and ions, specifically, Sr and Yb. Future measurements are expected to improve the relative precision by 5 orders of magnitude, and they can potentially lead to an unprecedented sensitivity for bosons within the 0.3 to 10 MeV mass range.

Probing New Long-Range Interactions by Isotope Shift Spectroscopy

DOE PAGES

Berengut, Julian C.; Budker, Dmitry; Delaunay, Cédric; ...

2018-02-26

We explore a method to probe new long- and intermediate-range interactions using precision atomic isotope shift spectroscopy. We develop a formalism to interpret linear King plots as bounds on new physics with minimal theory inputs. We focus only on bounding the new physics contributions that can be calculated independently of the standard model nuclear effects. We apply our method to existing Ca + data and project its sensitivity to conjectured new bosons with spin-independent couplings to the electron and the neutron using narrow transitions in other atoms and ions, specifically, Sr and Yb. Future measurements are expected to improve themore » relative precision by 5 orders of magnitude, and they can potentially lead to an unprecedented sensitivity for bosons within the 0.3 to 10 MeV mass range.« less

Map showing potential sources of gravel and crushed-rock aggregate in the greater Denver area, Front Range urban corridor, Colorado

USGS Publications Warehouse

Trimble, D.E.; Fitch, H.R.

1974-01-01

Gravel and (or) crushed-rock aggregates are essential commodities for urban development, but supplies in many places are exhausted or otherwise eliminated by urban growth. Gravel resources may be exhausted by exploitation, covered by urban spread, or eliminated from production by zoning. this conflict between a growing need and a progressively reduced supply can be forestalled by informed land-use planning. Fundamental to intelligent decisions on land use is knowledge of the physical character, distribution, and quantity of the gravel resources of an area, and of the alternative resource of rock suitable for crushing. This map has been prepared to supply data basic to land-use planning in the Front Range Urban Corridor.

The European Drought Observatory (EDO): Current State and Future Directions

NASA Astrophysics Data System (ADS)

Vogt, J.; Singleton, A.; Sepulcre, G.; Micale, F.; Barbosa, P.

2012-12-01

Europe has repeatedly been affected by droughts, resulting in considerable ecological and economic damage and climate change studies indicate a trend towards increasing climate variability most likely resulting in more frequent drought occurrences also in Europe. Against this background, the European Commission's Joint Research Centre (JRC) is developing methods and tools for assessing, monitoring and forecasting droughts in Europe and develops a European Drought Observatory (EDO) to complement and integrate national activities with a European view. At the core of the European Drought Observatory (EDO) is a portal, including a map server, a metadata catalogue, a media-monitor and analysis tools. The map server presents Europe-wide up-to-date information on the occurrence and severity of droughts, which is complemented by more detailed information provided by regional, national and local observatories through OGC compliant web mapping and web coverage services. In addition, time series of historical maps as well as graphs of the temporal evolution of drought indices for individual grid cells and administrative regions in Europe can be retrieved and analysed. Current work is focusing on validating the available products, improving the functionalities, extending the linkage to additional national and regional drought information systems and improving medium to long-range probabilistic drought forecasting products. Probabilistic forecasts are attractive in that they provide an estimate of the range of uncertainty in a particular forecast. Longer-term goals include the development of long-range drought forecasting products, the analysis of drought hazard and risk, the monitoring of drought impact and the integration of EDO in a global drought information system. The talk will provide an overview on the development and state of EDO, the different products, and the ways to include a wide range of stakeholders (i.e. European, national river basin, and local authorities) in the development of the system as well as an outlook on the future developments.

Petz recovery versus matrix reconstruction

NASA Astrophysics Data System (ADS)

Holzäpfel, Milan; Cramer, Marcus; Datta, Nilanjana; Plenio, Martin B.

2018-04-01

The reconstruction of the state of a multipartite quantum mechanical system represents a fundamental task in quantum information science. At its most basic, it concerns a state of a bipartite quantum system whose subsystems are subjected to local operations. We compare two different methods for obtaining the original state from the state resulting from the action of these operations. The first method involves quantum operations called Petz recovery maps, acting locally on the two subsystems. The second method is called matrix (or state) reconstruction and involves local, linear maps that are not necessarily completely positive. Moreover, we compare the quantities on which the maps employed in the two methods depend. We show that any state that admits Petz recovery also admits state reconstruction. However, the latter is successful for a strictly larger set of states. We also compare these methods in the context of a finite spin chain. Here, the state of a finite spin chain is reconstructed from the reduced states of a few neighbouring spins. In this setting, state reconstruction is the same as the matrix product operator reconstruction proposed by Baumgratz et al. [Phys. Rev. Lett. 111, 020401 (2013)]. Finally, we generalize both these methods so that they employ long-range measurements instead of relying solely on short-range correlations embodied in such local reduced states. Long-range measurements enable the reconstruction of states which cannot be reconstructed from measurements of local few-body observables alone and hereby we improve existing methods for quantum state tomography of quantum many-body systems.

Integrating hydrodynamic models and COSMO-SkyMed derived products for flood damage assessment

NASA Astrophysics Data System (ADS)

Giuffra, Flavio; Boni, Giorgio; Pulvirenti, Luca; Pierdicca, Nazzareno; Rudari, Roberto; Fiorini, Mattia

2015-04-01

Floods are the most frequent weather disasters in the world and probably the most costly in terms of social and economic losses. They may have a strong impact on infrastructures and health because the range of possible damages includes casualties, loss of housing and destruction of crops. Presently, the most common approach for remotely sensing floods is the use of synthetic aperture radar (SAR) images. Key features of SAR data for inundation mapping are the synoptic view, the capability to operate even in cloudy conditions and during both day and night time and the sensitivity of the microwave radiation to water. The launch of a new generation of instruments, such as TerraSAR-X and COSMO-SkyMed (CSK) allows producing near real time flood maps having a spatial resolution in the order of 1-5 m. Moreover, the present (CSK) and upcoming (Sentinel-1) constellations permit the acquisition of radar data characterized by a short revisit time (in the order of some hours for CSK), so that the production of frequent inundation maps can be envisaged. Nonetheless, gaps might be present in the SAR-derived flood maps because of the limited area imaged by SAR; moreover, the detection of floodwater may be complicated by the presence of very dense vegetation or urban settlements. Hence the need to complement SAR-derived flood maps with the outputs of physical models. Physical models allow delivering to end users very useful information for a complete flood damage assessment, such as data on water depths and flow directions, which cannot be directly derived from satellite remote sensing images. In addition, the flood extent predictions of hydraulic models can be compared to SAR-derived inundation maps to calibrate the models, or to fill the aforementioned gaps that can be present in the SAR-derived maps. Finally, physical models enable the construction of risk scenarios useful for emergency managers to take their decisions and for programming additional SAR acquisitions in order to observe the temporal evolution of the event (e.g. the water receding). In this paper, the first outcomes of a study aiming at combining COSMO-SkyMed derived flood maps with hydrodynamic models are presented. The study is carried out within the framework of the EO-based CHange detection for Operational Flood Management (ECHO-FM) project, funded by the Italian Space Agency (ASI) as part of the research activities agreed in the cooperation between ASI and the Japan Aerospace Exploration Agency (JAXA). The flood that hit the region of Shkodër, in Albania, on January 2010, is considered as test case. The work focuses on the utility of a dense temporal series of SAR data, such as that available through CSK for this case study, used in combination with a hydrodynamic model to monitor over a long time (in the order of 3 weeks) the natural drainage of the Shkodër floodplain. It is shown that by matching the outputs of the model to SAR observations, the hydrodynamic inconsistencies in CSK estimates can be corrected.

Reaching for the Horizon: The 2015 NSAC Long Range Plan

NASA Astrophysics Data System (ADS)

Geesaman, Donald

2015-10-01

In April 2014, the Nuclear Science Advisory Committee was charged to conduct a new study of the opportunities and priorities for United States nuclear physics research and to recommend a long range plan for the coordinated advancement of the Nation's nuclear science program over the next decade. The entire community actively contributed to developing this plan. Ideas and goals, new and old, were examined and community priorities were established. The Long Range Plan Working Group gathered at Kitty Hawk, NC to converge on the recommendations. In this talk I will discuss the vision for the future that has emerged from this process. The new plan, ``Reaching for the Horizon,'' offers the promise of great leaps forward in our understanding of nuclear science and new opportunities for nuclear science to serve society. This work was supported by the U. S. Department of Energy, Office of Science, Office of Nuclear Physics, under Contract No. DE-AC02-06CH11357.

High resolution physical mapping of single gene fragments on pachytene chromosome 4 and 7 of Rosa.

PubMed

Kirov, Ilya V; Van Laere, Katrijn; Khrustaleva, Ludmila I

2015-07-02

Rosaceae is a family containing many economically important fruit and ornamental species. Although fluorescence in situ hybridization (FISH)-based physical mapping of plant genomes is a valuable tool for map-based cloning, comparative genomics and evolutionary studies, no studies using high resolution physical mapping have been performed in this family. Previously we proved that physical mapping of single-copy genes as small as 1.1 kb is possible on mitotic metaphase chromosomes of Rosa wichurana using Tyramide-FISH. In this study we aimed to further improve the physical map of Rosa wichurana by applying high resolution FISH to pachytene chromosomes. Using high resolution Tyramide-FISH and multicolor Tyramide-FISH, 7 genes (1.7-3 kb) were successfully mapped on pachytene chromosomes 4 and 7 of Rosa wichurana. Additionally, by using multicolor Tyramide-FISH three closely located genes were simultaneously visualized on chromosome 7. A detailed map of heterochromatine/euchromatine patterns of chromosome 4 and 7 was developed with indication of the physical position of these 7 genes. Comparison of the gene order between Rosa wichurana and Fragaria vesca revealed a poor collinearity for chromosome 7, but a perfect collinearity for chromosome 4. High resolution physical mapping of short probes on pachytene chromosomes of Rosa wichurana was successfully performed for the first time. Application of Tyramide-FISH on pachytene chromosomes allowed the mapping resolution to be increased up to 20 times compared to mitotic metaphase chromosomes. High resolution Tyramide-FISH and multicolor Tyramide-FISH might become useful tools for further physical mapping of single-copy genes and for the integration of physical and genetic maps of Rosa wichurana and other members of the Rosaceae.

Functional Connectivity Density Mapping of Depressive Symptoms and Loneliness in Non-Demented Elderly Male

PubMed Central

Lan, Chen-Chia; Tsai, Shih-Jen; Huang, Chu-Chung; Wang, Ying-Hsiu; Chen, Tong-Ru; Yeh, Heng-Liang; Liu, Mu-En; Lin, Ching-Po; Yang, Albert C.

2016-01-01

Background: Depression and loneliness are prevalent and highly correlated phenomena among the elderly and influence both physical and mental health. Brain functional connectivity changes associated with depressive symptoms and loneliness are not fully understood. Methods: A cross-sectional functional MRI study was conducted among 85 non-demented male elders. Geriatric depression scale-short form (GDS) and loneliness scale were used to evaluate the severity of depressive symptoms and loneliness, respectively. Whole brain voxel-wise resting-state functional connectivity density (FCD) mapping was performed to delineate short-range FCD (SFCD) and long-range FCD (LFCD). Regional correlations between depressive symptoms or loneliness and SFCD or LFCD were examined using general linear model (GLM), with age incorporated as a covariate and depressive symptoms and loneliness as predictors. Results: Positive correlations between depressive symptoms and LFCD were observed in left rectal gyrus, left superior frontal gyrus, right supraorbital gyrus, and left inferior temporal gyrus. Positive correlations between depressive symptoms and SFCD were observed in left middle frontal gyrus, left superior frontal gyrus, bilateral superior medial frontal gyrus, left inferior temporal gyrus, and left middle occipital region. Positive correlations between SFCD and loneliness were centered over bilateral lingual gyrus. Conclusion: Depressive symptoms are associated with FCD changes over frontal and temporal regions, which may involve the cognitive control, affective regulation, and default mode networks. Loneliness is associated with FCD changes in bilateral lingual gyri that are known to be important in social cognition. Depressive symptoms and loneliness may be associated with different brain regions in non-demented elderly male. PMID:26793101

Evidence, Theory and Context: Using intervention mapping to develop a worksite physical activity intervention

PubMed Central

McEachan, Rosemary RC; Lawton, Rebecca J; Jackson, Cath; Conner, Mark; Lunt, Jennifer

2008-01-01

Background The workplace is an ideal setting for health promotion. Helping employees to be more physically active can not only improve their physical and mental health, but can also have economic benefits such as reduced sickness absence. The current paper describes the development of a three month theory-based intervention that aims to increase levels of moderate intensity physical activity amongst employees in sedentary occupations. Methods The intervention was developed using an intervention mapping protocol. The intervention was also informed by previous literature, qualitative focus groups, an expert steering group, and feedback from key contacts within a range of organisations. Results The intervention was designed to target awareness (e.g. provision of information), motivation (e.g. goal setting, social support) and environment (e.g. management support) and to address behavioural (e.g. increasing moderate physical activity in work) and interpersonal outcomes (e.g. encourage colleagues to be more physically active). The intervention can be implemented by local facilitators without the requirement for a large investment of resources. A facilitator manual was developed which listed step by step instructions on how to implement each component along with a suggested timetable. Conclusion Although time consuming, intervention mapping was found to be a useful tool for developing a theory based intervention. The length of this process has implications for the way in which funding bodies allow for the development of interventions as part of their funding policy. The intervention will be evaluated in a cluster randomised trial involving 1350 employees from 5 different organisations, results available September 2009. PMID:18808709

Interpretation of 2D Resistivity with Engineering Characterisation of Subsurface Exploration in Nusajaya Johor, Malaysia

NASA Astrophysics Data System (ADS)

Akip Tan, S. N. Mohd; Dan, M. F. Md; Edy Tonnizam, M.; Saad, R.; Madun, A.; Hazreek, Z. A. M.

2018-04-01

2-D resistivity technique and pole-dipole array with spacing of 2 m electrode and total spacing of 80 m were adopted to map and characterize the shallow subsurface in a sedimentary area at Nusajaya, Johor. Geological field mapping and laboratory testing were conducted to determine weathering grades. Res2Dinv software was used to generate the inversion model resistivity. The result shows sandstone contains iron mineral (30-1000ohm-m) and weathered sandstone (500-1000 ohm-m). The lowest layer represents sandstone and siltstone with the highest range from 1500 through 5000 ohm-m. The weathering grade IV and V of sandstone in the actual profile indicates the range from 30 to 1000 ohm-m, whereas grade II and III in ground mass matched the higest range. Overall, the increase of weathering grade influenced both the physical properties and strength of rocks.

Broadband classification and statistics of echoes from aggregations of fish measured by long-range, mid-frequency sonar.

PubMed

Jones, Benjamin A; Stanton, Timothy K; Colosi, John A; Gauss, Roger C; Fialkowski, Joseph M; Michael Jech, J

2017-06-01

For horizontal-looking sonar systems operating at mid-frequencies (1-10 kHz), scattering by fish with resonant gas-filled swimbladders can dominate seafloor and surface reverberation at long-ranges (i.e., distances much greater than the water depth). This source of scattering, which can be difficult to distinguish from other sources of scattering in the water column or at the boundaries, can add spatio-temporal variability to an already complex acoustic record. Sparsely distributed, spatially compact fish aggregations were measured in the Gulf of Maine using a long-range broadband sonar with continuous spectral coverage from 1.5 to 5 kHz. Observed echoes, that are at least 15 decibels above background levels in the horizontal-looking sonar data, are classified spectrally by the resonance features as due to swimbladder-bearing fish. Contemporaneous multi-frequency echosounder measurements (18, 38, and 120 kHz) and net samples are used in conjunction with physics-based acoustic models to validate this approach. Furthermore, the fish aggregations are statistically characterized in the long-range data by highly non-Rayleigh distributions of the echo magnitudes. These distributions are accurately predicted by a computationally efficient, physics-based model. The model accounts for beam-pattern and waveguide effects as well as the scattering response of aggregations of fish.

Many-Body Physics in Long-Range Interacting Quantum Systems

NASA Astrophysics Data System (ADS)

Zhu, Bihui

Ultracold atomic and molecular systems provide a useful platform for understanding quantum many-body physics. Recent progresses in AMO experiments enable access to systems exhibiting long-range interactions, opening a window for exploring the interplay between long-range interactions and dissipation. In this thesis, I develop theoretical approaches to study non-equilibrium dynamics in systems where such interplay is crucial. I first focus on a system of KRb molecules, where dipolar interactions and fast chemical reactions coexist. Using a classical kinetic theory and Monte Carlo methods, I study the evaporative cooling in a quasi-two-dimensional trap, and develop a protocol to reach quantum degeneracy. I also study the case where molecules are loaded into an optical lattice, and show that the strong dissipation induces a quantum Zeno effect, which suppresses the molecule loss. The analysis requires including multiple bands to explain recent experimental measurements, and can be used to determine the molecular filling fraction. I also investigate a system of radiating atoms, which experience long-range elastic and dissipative interactions. I explore the collective behavior of atoms and the role of atomic motion. The model is validated by comparison with a recent light scattering experiment using Sr atoms. I also show that incoherently pumped dipoles can undergo a dynamical phase transition to synchronization, and study its signature in the quantum regime.

Self-reported sleep duration and time in bed as predictors of physical function decline: results from the InCHIANTI study.

PubMed

Stenholm, Sari; Kronholm, Erkki; Bandinelli, Stefania; Guralnik, Jack M; Ferrucci, Luigi

2011-11-01

To characterize elderly persons into sleep/rest groups based on their self-reported habitual total sleeping time (TST) and habitual time in bed (TIB) and to examine the prospective association between sleep/rest behavior on physical function decline. Population-based InCHIANTI study with 6 years follow-up (Tuscany, Italy). Community. Men and women aged ≥ 65 years (n = 751). At baseline, participants were categorized into 5 sleep/rest behavior groups according to their self-reported TST and TIB, computed from bedtime and wake-up time. Physical function was assessed at baseline and at 3- and 6-year follow-ups as walking speed, the Short Physical Performance Battery (SPPB), and self-reported mobility disability (ability to walk 400 m or climb one flight of stairs). Both long (≥ 9 h) TST and long TIB predicted accelerated decline in objectively measured physical performance and greater incidence in subjectively assessed mobility disability, but short (≤ 6 h) TST did not. After combining TST and TIB, long sleepers (TST and TIB ≥ 9 h) experienced the greatest decline in physical performance and had the highest risk for incident mobility disability in comparison to mid-range sleepers with 7-8 h TST and TIB. Subjective short sleepers reporting short (≤ 6 h) TST but long (≥ 9 h) TIB showed a greater decline in SPPB score and had a higher risk of incident mobility disability than true short sleepers with short (≤ 6 h) TST and TIB ≤ 8 hours. Extended time in bed as well as long total sleeping time is associated with greater physical function decline than mid-range or short sleep. TIB offers important additive information to the self-reported sleep duration when evaluating the consequences of sleep duration on health and functional status.

Systematic Review of Biofeedback Interventions for Addressing Anxiety and Depression in Children and Adolescents with Long-Term Physical Conditions.

PubMed

Thabrew, Hiran; Ruppeldt, Philip; Sollers, John J

2018-06-26

Children and adolescents with long-term physical conditions are at increased risk of psychological problems, particularly anxiety and depression, and they have limited access to evidence-based treatment for these issues. Biofeedback interventions may be useful for treating symptoms of both psychological and physical conditions. A systematic review of studies of biofeedback interventions that addressed anxiety or depression in this population was undertaken via MEDLINE, EMBASE, PsycINFO, CINAHL and the Cochrane Central Register of Controlled Trials databases. Primary outcomes included changes in anxiety and depression symptoms and 'caseness'. Secondary outcomes included changes in symptoms of the associated physical condition and acceptability of the biofeedback intervention. Of 1876 identified citations, 9 studies (4 RCTs, 5 non-RCTs; of which all measured changes in anxiety and 3 of which measured changes in depression) were included in the final analysis and involved participants aged 8-25 years with a range of long-term physical conditions. Due to the heterogeneity of study design and reporting, risk of bias was judged as unclear for all studies and meta-analysis of findings was not undertaken. Within the identified sample, multiple modalities of biofeedback including heart rate variability (HRV), biofeedback assisted relaxation therapy and electroencephalography were found to be effective in reducing symptoms of anxiety. HRV was also found to be effective in reducing symptoms of depression in two studies. A range of modalities was effective in improving symptoms of long-term physical conditions. Two studies that assessed acceptability provided generally positive feedback. There is currently limited evidence to support the use of biofeedback interventions for addressing anxiety and depression in children and adolescents with long-term physical conditions. Although promising, further research using more stringent methodology and reporting is required before biofeedback interventions can be recommended for clinical use instead or in addition to existing evidence-based modalities of treatment.

The Pre-Major in Astronomy Program at the University of Washington: Increasing Diversity Through Research Experiences and Mentoring Since 2005

NASA Astrophysics Data System (ADS)

Rosenfield, Philip

2013-01-01

Graduate students in the astronomy department at the University of Washington began the Pre-Major in Astronomy Program (Pre-MAP) after recognizing that underrepresented students in STEM fields are not well retained after their transition from high school. Pre-MAP is a research and mentoring program that begins with a keystone seminar. First year students enroll in the Pre-MAP seminar to learn astronomical research techniques that they apply to research projects conducted in small groups. Students also receive one-on-one mentoring and peer support for the duration of the academic year and beyond. They are incorporated early into the department by attending Astronomy Department events and Pre-MAP field trips. Successful Pre-MAP students have declared astronomy and physics majors, expanded their research projects beyond the fall quarter, presented posters at the UW Undergraduate Research Symposium, and received research fellowships and summer internships. In this talk, we will discuss how we identified the issues that Pre-MAP was designed to address, what we've learned after six years of Pre-MAP, and share statistical results from a long-term quantitative comparison evaluation.

Observing the Cosmic Microwave Background Radiation: A Unique Window on the Early Universe

NASA Technical Reports Server (NTRS)

Hinshaw, Gary; Fisher, Richard R. (Technical Monitor)

2001-01-01

The cosmic microwave background radiation is the remnant heat from the Big Bang. It provides us with a unique probe of conditions in the early universe, long before any organized structures had yet formed. The anisotropy in the radiation's brightness yields important clues about primordial structure and additionally provides a wealth of information about the physics,of the early universe. Within the framework of inflationary dark matter models observations of the anisotropy on sub-degree angular scales will reveal the signatures of acoustic oscillations of the photon-baryon fluid at a redshift of approx. 1100. The validity of inflationary models will be tested and, if agreement is found, accurate values for most of the key cosmological parameters will result. If disagreement is found, we will need to rethink our basic ideas about the physics of the early universe. I will present an overview of the physical processes at work in forming the anisotropy and discuss what we have already learned from current observations. I will conclude with a brief overview of the recently launched Microwave Anisotropy Probe (MAP) mission which will observe the anisotropy over the full sky with 0.21 degree angular resolution. At the time of this meeting, MAP will have just arrived at the L2 Lagrange point, marking the start of its observing campaign. The MAP hardware is being produced by Goddard in partnership with Princeton University.

Near Surface Investigation of Agricultural Soils using a Multi-Frequency Electromagnetic Sensor

NASA Astrophysics Data System (ADS)

Sadatcharam, K.; Unc, A.; Krishnapillai, M.; Cheema, M.; Galagedara, L.

2017-12-01

Electromagnetic induction (EMI) sensors have been used as precision agricultural tools over decades. They are being used to measure spatiotemporal variability of soil properties and soil stratification in the sense of apparent electrical conductivity (ECa). We mapped the ECa variability by horizontal coplanar (HCP) and by vertical coplanar (VCP) orientation of a multi-frequency EMI sensor and identified its interrelation with physical properties of soil. A broadband, multi-frequency handheld EMI sensor (GEM-2) was used on a loamy sand soil cultivated with silage-corn in western Newfoundland, Canada. Log and line spaced, three frequency ranges (weak, low, and high), based on the factory calibration were tested using HCP and VCP orientation to produce spatiotemporal data of ECa. In parallel, we acquired data on soil moisture content, texture and bulk density. We then assessed the statistical significance of the relationship between ECa and soil physical properties. The test site had three areas of distinct soil properties corresponding to the elevation, in particular. The same spatial variability was also identified by ECa mapping at different frequencies and the two modes of coil orientations. Data analysis suggested that the high range frequency (38 kHz (log-spaced) and 49 kHz (line-spaced)) for both HCP and VCP orientations produced accurate ECa maps, better than the weak and low range frequencies tested. Furthermore, results revealed that the combined effects of soil texture, moisture content and bulk density affect ECameasurements as obtained by both frequencies and two coil orientations. Keywords: Apparent electrical conductivity, Electromagnetic induction, Horizontal coplanar, Soil properties, Vertical coplanar

Determination of the mass function of extra-galactic GMCs via NIR color maps. Testing the method in a disk-like geometry

NASA Astrophysics Data System (ADS)

Kainulainen, J.; Juvela, M.; Alves, J.

2007-06-01

The giant molecular clouds (GMCs) of external galaxies can be mapped with sub-arcsecond resolution using multiband observations in the near-infrared. However, the interpretation of the observed reddening and attenuation of light, and their transformation into physical quantities, is greatly hampered by the effects arising from the unknown geometry and the scattering of light by dust particles. We examine the relation between the observed near-infrared reddening and the column density of the dust clouds. In this paper we particularly assess the feasibility of deriving the mass function of GMCs from near-infrared color excess data. We perform Monte Carlo radiative transfer simulations with 3D models of stellar radiation and clumpy dust distributions. We include the scattered light in the models and calculate near-infrared color maps from the simulated data. The color maps are compared with the true line-of-sight density distributions of the models. We extract clumps from the color maps and compare the observed mass function to the true mass function. For the physical configuration chosen in this study, essentially a face-on geometry, the observed mass function is a non-trivial function of the true mass function with a large number of parameters affecting its exact form. The dynamical range of the observed mass function is confined to 103.5dots 105.5 M_⊙ regardless of the dynamical range of the true mass function. The color maps are more sensitive in detecting the high-mass end of the mass function, and on average the masses of clouds are underestimated by a factor of ˜ 10 depending on the parameters describing the dust distribution. A significant fraction of clouds is expected to remain undetected at all masses. The simulations show that the cloud mass function derived from JHK color excess data using simple foreground screening geometry cannot be regarded as a one-to-one tracer of the underlying mass function.

Retrieval and Mapping of Soil Texture Based on Land Surface Diurnal Temperature Range Data from MODIS

PubMed Central

Wang, De-Cai; Zhang, Gan-Lin; Zhao, Ming-Song; Pan, Xian-Zhang; Zhao, Yu-Guo; Li, De-Cheng; Macmillan, Bob

2015-01-01

Numerous studies have investigated the direct retrieval of soil properties, including soil texture, using remotely sensed images. However, few have considered how soil properties influence dynamic changes in remote images or how soil processes affect the characteristics of the spectrum. This study investigated a new method for mapping regional soil texture based on the hypothesis that the rate of change of land surface temperature is related to soil texture, given the assumption of similar starting soil moisture conditions. The study area was a typical flat area in the Yangtze-Huai River Plain, East China. We used the widely available land surface temperature product of MODIS as the main data source. We analyzed the relationships between the content of different particle soil size fractions at the soil surface and land surface day temperature, night temperature and diurnal temperature range (DTR) during three selected time periods. These periods occurred after rainfalls and between the previous harvest and the subsequent autumn sowing in 2004, 2007 and 2008. Then, linear regression models were developed between the land surface DTR and sand (> 0.05 mm), clay (< 0.001 mm) and physical clay (< 0.01 mm) contents. The models for each day were used to estimate soil texture. The spatial distribution of soil texture from the studied area was mapped based on the model with the minimum RMSE. A validation dataset produced error estimates for the predicted maps of sand, clay and physical clay, expressed as RMSE of 10.69%, 4.57%, and 12.99%, respectively. The absolute error of the predictions is largely influenced by variations in land cover. Additionally, the maps produced by the models illustrate the natural spatial continuity of soil texture. This study demonstrates the potential for digitally mapping regional soil texture variations in flat areas using readily available MODIS data. PMID:26090852

Retrieval and Mapping of Soil Texture Based on Land Surface Diurnal Temperature Range Data from MODIS.

PubMed

Wang, De-Cai; Zhang, Gan-Lin; Zhao, Ming-Song; Pan, Xian-Zhang; Zhao, Yu-Guo; Li, De-Cheng; Macmillan, Bob

2015-01-01

Numerous studies have investigated the direct retrieval of soil properties, including soil texture, using remotely sensed images. However, few have considered how soil properties influence dynamic changes in remote images or how soil processes affect the characteristics of the spectrum. This study investigated a new method for mapping regional soil texture based on the hypothesis that the rate of change of land surface temperature is related to soil texture, given the assumption of similar starting soil moisture conditions. The study area was a typical flat area in the Yangtze-Huai River Plain, East China. We used the widely available land surface temperature product of MODIS as the main data source. We analyzed the relationships between the content of different particle soil size fractions at the soil surface and land surface day temperature, night temperature and diurnal temperature range (DTR) during three selected time periods. These periods occurred after rainfalls and between the previous harvest and the subsequent autumn sowing in 2004, 2007 and 2008. Then, linear regression models were developed between the land surface DTR and sand (> 0.05 mm), clay (< 0.001 mm) and physical clay (< 0.01 mm) contents. The models for each day were used to estimate soil texture. The spatial distribution of soil texture from the studied area was mapped based on the model with the minimum RMSE. A validation dataset produced error estimates for the predicted maps of sand, clay and physical clay, expressed as RMSE of 10.69%, 4.57%, and 12.99%, respectively. The absolute error of the predictions is largely influenced by variations in land cover. Additionally, the maps produced by the models illustrate the natural spatial continuity of soil texture. This study demonstrates the potential for digitally mapping regional soil texture variations in flat areas using readily available MODIS data.

Comparison of peanut gentics and physical maps provided insights on collinearity, reversions and translocations

USDA-ARS?s Scientific Manuscript database

Genetic and physical maps are the valuable resources for peanut research community in understanding genome organization and serving as the basis for map-based cloning and marker-assisted selection. Physical maps of two diploid wild peanut progenitor species, Arachis duranensis (A genome) and A. ipae...

Application of Physically based landslide susceptibility models in Brazil

NASA Astrophysics Data System (ADS)

Carvalho Vieira, Bianca; Martins, Tiago D.

2017-04-01

Shallow landslides and floods are the processes responsible for most material and environmental damages in Brazil. In the last decades, some landslides events induce a high number of deaths (e.g. Over 1000 deaths in one event) and incalculable social and economic losses. Therefore, the prediction of those processes is considered an important tool for land use planning tools. Among different methods the physically based landslide susceptibility models having been widely used in many countries, but in Brazil it is still incipient when compared to other ones, like statistical tools and frequency analyses. Thus, the main objective of this research was to assess the application of some Physically based landslide susceptibility models in Brazil, identifying their main results, the efficiency of susceptibility mapping, parameters used and limitations of the tropical humid environment. In order to achieve that, it was evaluated SHALSTAB, SINMAP and TRIGRS models in some studies in Brazil along with the Geotechnical values, scales, DEM grid resolution and the results based on the analysis of the agreement between predicted susceptibility and the landslide scar's map. Most of the studies in Brazil applied SHALSTAB, SINMAP and to a lesser extent the TRIGRS model. The majority researches are concentrated in the Serra do Mar mountain range, that is a system of escarpments and rugged mountains that extends more than 1,500 km along the southern and southeastern Brazilian coast, and regularly affected by heavy rainfall that generates widespread mass movements. Most part of these studies used conventional topographic maps with scales ranging from 1:2000 to 1:50000 and DEM-grid resolution between 2 and 20m. Regarding the Geotechnical and hydrological values, a few studies use field collected data which could produce more efficient results, as indicated by international literature. Therefore, even though they have enormous potential in the susceptibility mapping, even for comparison purposes between different areas, the studies in Brazil require more detailed consideration on the input of topographic and Geotechnical parameters.

Infrasonic Emissions From A Tornado

NASA Astrophysics Data System (ADS)

Petrin, Christopher; Elbing, Brian

2017-11-01

Tornadoes cause dozens of deaths and significant damage throughout the United States every year. Tornado-producing storm systems emit infrasound (sound at frequencies below human hearing) up to 2 hours before tornadogenesis. Weak atmospheric attenuation at these frequencies allows them to be detected hundreds of miles away. Hence, passive infrasonic monitoring may be used for long-range study of tornadogenesis. This requires characterization of infrasound during the life of a tornado and from other background sources. This is being accomplished as part of the Collaboration Leading Operational UAS Development for Meteorology and Atmospheric Physics (CLOUD-MAP) project, a multi-university collaboration focused on the development and implementation of unmanned aerial systems (UAS) and their integration with sensors for atmospheric measurement. This presentation will report findings from a fixed infrasonic microphone that has been continuously monitoring the atmosphere since September 2, 2016. Infrasound from a tornado that occurred 19 km from the microphone on May 11, 2017 will be presented as well as an overview of other infrasonic observations. This work was supported by NSF Grant 1539070.

Atlas of Seasonal Means Simulated by the NSIPP 1 Atmospheric GCM. Volume 17

NASA Technical Reports Server (NTRS)

Suarez, Max J. (Editor); Bacmeister, Julio; Pegion, Philip J.; Schubert, Siegfried D.; Busalacchi, Antonio J. (Technical Monitor)

2000-01-01

This atlas documents the climate characteristics of version 1 of the NASA Seasonal-to-Interannual Prediction Project (NSIPP) Atmospheric General Circulation Model (AGCM). The AGCM includes an interactive land model (the Mosaic scheme), and is part of the NSIPP coupled atmosphere-land-ocean model. The results presented here are based on a 20-year (December 1979-November 1999) "ANIIP-style" integration of the AGCM in which the monthly-mean sea-surface temperature and sea ice are specified from observations. The climate characteristics of the AGCM are compared with the National Centers for Environmental Prediction (NCEP) and the European Center for Medium-Range Weather Forecasting (ECMWF) reanalyses. Other verification data include Special Sensor Microwave/Imager (SSNM) total precipitable water, the Xie-Arkin estimates of precipitation, and Earth Radiation Budget Experiment (ERBE) measurements of short and long wave radiation. The atlas is organized by season. The basic quantities include seasonal mean global maps and zonal and vertical averages of circulation, variance/covariance statistics, and selected physics quantities.

Access to Network Login by Three-Factor Authentication for Effective Information Security.

PubMed

Vaithyasubramanian, S; Christy, A; Saravanan, D

2016-01-01

Today's technology development in the field of computer along with internet of things made huge difference in the transformation of our lives. Basic computer framework and web client need to make significant login signify getting to mail, long range interpersonal communication, internet keeping money, booking tickets, perusing online daily papers, and so forth. The login user name and secret key mapping validate if the logging user is the intended client. Secret key is assumed an indispensable part in security. The objective of MFA is to make a layered safeguard and make it more troublesome for an unauthenticated entity to get to an objective, for example, a physical area, processing gadget, system, or database. In the event that one element is bargained or broken, the assailant still has two more boundaries to rupture before effectively breaking into the objective. An endeavor has been made by utilizing three variable types of authentication. In this way managing additional secret key includes an additional layer of security.

Access to Network Login by Three-Factor Authentication for Effective Information Security

PubMed Central

Vaithyasubramanian, S.; Christy, A.; Saravanan, D.

2016-01-01

Today's technology development in the field of computer along with internet of things made huge difference in the transformation of our lives. Basic computer framework and web client need to make significant login signify getting to mail, long range interpersonal communication, internet keeping money, booking tickets, perusing online daily papers, and so forth. The login user name and secret key mapping validate if the logging user is the intended client. Secret key is assumed an indispensable part in security. The objective of MFA is to make a layered safeguard and make it more troublesome for an unauthenticated entity to get to an objective, for example, a physical area, processing gadget, system, or database. In the event that one element is bargained or broken, the assailant still has two more boundaries to rupture before effectively breaking into the objective. An endeavor has been made by utilizing three variable types of authentication. In this way managing additional secret key includes an additional layer of security. PMID:27006976

Hyperspectral remote sensing of vegetation

USGS Publications Warehouse

Thenkabail, Prasad S.; Lyon, John G.; Huete, Alfredo

2011-01-01

Hyperspectral narrow-band (or imaging spectroscopy) spectral data are fast emerging as practical solutions in modeling and mapping vegetation. Recent research has demonstrated the advances in and merit of hyperspectral data in a range of applications including quantifying agricultural crops, modeling forest canopy biochemical properties, detecting crop stress and disease, mapping leaf chlorophyll content as it influences crop production, identifying plants affected by contaminants such as arsenic, demonstrating sensitivity to plant nitrogen content, classifying vegetation species and type, characterizing wetlands, and mapping invasive species. The need for significant improvements in quantifying, modeling, and mapping plant chemical, physical, and water properties is more critical than ever before to reduce uncertainties in our understanding of the Earth and to better sustain it. There is also a need for a synthesis of the vast knowledge spread throughout the literature from more than 40 years of research.

Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes.

PubMed

Moon, Suyun; Lee, Hwa-Yong; Shim, Donghwan; Kim, Myungkil; Ka, Kang-Hyeon; Ryoo, Rhim; Ko, Han-Gyu; Koo, Chang-Duck; Chung, Jong-Wook; Ryu, Hojin

2017-06-01

Sixteen genomic DNA simple sequence repeat (SSR) markers of Lentinula edodes were developed from 205 SSR motifs present in 46.1-Mb long L. edodes genome sequences. The number of alleles ranged from 3-14 and the major allele frequency was distributed from 0.17-0.96. The values of observed and expected heterozygosity ranged from 0.00-0.76 and 0.07-0.90, respectively. The polymorphic information content value ranged from 0.07-0.89. A dendrogram, based on 16 SSR markers clustered by the paired hierarchical clustering' method, showed that 33 shiitake cultivars could be divided into three major groups and successfully identified. These SSR markers will contribute to the efficient breeding of this species by providing diversity in shiitake varieties. Furthermore, the genomic information covered by the markers can provide a valuable resource for genetic linkage map construction, molecular mapping, and marker-assisted selection in the shiitake mushroom.

Optimizing visual comfort for stereoscopic 3D display based on color-plus-depth signals.

PubMed

Shao, Feng; Jiang, Qiuping; Fu, Randi; Yu, Mei; Jiang, Gangyi

2016-05-30

Visual comfort is a long-facing problem in stereoscopic 3D (S3D) display. In this paper, targeting to produce S3D content based on color-plus-depth signals, a general framework for depth mapping to optimize visual comfort for S3D display is proposed. The main motivation of this work is to remap the depth range of color-plus-depth signals to a new depth range that is suitable to comfortable S3D display. Towards this end, we first remap the depth range globally based on the adjusted zero disparity plane, and then present a two-stage global and local depth optimization solution to solve the visual comfort problem. The remapped depth map is used to generate the S3D output. We demonstrate the power of our approach on perceptually uncomfortable and comfortable stereoscopic images.

Dynamics of Galaxy Clusters and Expectations from Astro-H

NASA Technical Reports Server (NTRS)

Markevitch, Maxim

2012-01-01

Galaxy clusters span a range of dynamical states, from violent mergers -- the most energetic events in the Universe -- to systems near hydrostatic equilibrium that allow us to map their dark matter distribution using X-ray observations of the intracluster gas. Accurate knowledge of the cluster physics, and in particular, the physics of the hot intracluster gas, is required to realize the full potential of clusters as cosmological probes. So far, we have been studying the cluster dynamics indirectly, deducing merger geometries, cluster masses, etc., using X-ray brightness and gas temperature mapping. For the first time, the calorimeter onboard Astro-H will provide direct measurements of line-of-sight velocities and turbulent broadening in the intracluster gas, testing many of our key assumptions about clusters. This talk will summarize expectations for cluster dynamic studies with this new instrument.

Mapping soil texture targeting predefined depth range or synthetizing from standard layers?

NASA Astrophysics Data System (ADS)

Laborczi, Annamária; Dezső Kaposi, András; Szatmári, Gábor; Takács, Katalin; Pásztor, László

2017-04-01

There are increasing demands nowadays on spatial soil information in order to support environmental related and land use management decisions. Physical soil properties, especially particle size distribution play important role in this context. A few of the requirements can be satisfied by the sand-, silt-, and clay content maps compiled according to global standards such as GlobalSoilMap (GSM) or Soil Grids. Soil texture classes (e. g. according to USDA classification) can be derived from these three fraction data, in this way texture map can be compiled based on the proper separate maps. Soil texture class as well as fraction information represent direct input of crop-, meteorological- and hydrological models. The model inputs frequently require maps representing soil features of 0-30 cm depth, which is covered by three consecutive depth intervals according to standard specifications: 0-5 cm, 5-15 cm, 15-30 cm. Becoming GSM and SoilGrids the most detailed freely available spatial soil data sources, the common model users (e. g. meteorologists, agronomists, or hydrologists) would produce input map from (the weighted mean of) these three layers. However, if the basic soil data and proper knowledge is obtainable, a soil texture map targeting directly the 0-30 cm layer could be independently compiled. In our work we compared Hungary's soil texture maps compiled using the same reference and auxiliary data and inference methods but for differing layer distribution. We produced the 0-30 cm clay, silt and sand map as well as the maps for the three standard layers (0-5 cm, 5-15 cm, 15-30 cm). Maps of sand, silt and clay percentage were computed through regression kriging (RK) applying Additive Log-Ratio (alr) transformation. In addition to the Hungarian Soil Information and Monitoring System as reference soil data, digital elevation model and its derived components, soil physical property maps, remotely sensed images, land use -, geological-, as well as meteorological data were applied as auxiliary variables. We compared the directly compiled and the synthetized clay-, sand content, and texture class maps by different tools. In addition to pairwise comparison of basic statistical features (histograms, scatter plots), we examined the spatial distribution of the differences. We quantified the taxonomical distances of the textural classes, in order to investigate the differences of the map-pairs. We concluded that the directly computed and the synthetized maps show various differences. In the case of clay-, and sand content maps, the map-pairs have to be considered statistically different. On the other hand, the differences of the texture class maps are not significant. However, in all cases, the differences rather concern the extreme ranges and categories. Using of synthetized maps can intensify extremities by error propagation in models and scenarios. Based on our results, we suggest the usage of the directly composed maps.

Action at a Distance in the Cell's Nucleus

NASA Astrophysics Data System (ADS)

Kondev, Jane

Various functions performed by chromosomes involve long-range communication between DNA sequences that are tens of thousands of bases apart along the genome, and microns apart in the nucleus. In this talk I will discuss experiments and theory relating to two distinct modes of long-range communication in the nucleus, chromosome looping and protein hopping along the chromosome, both in the context of DNA-break repair in yeast. Yeast is an excellent model system for studies that link chromosome conformations to their function as there is ample experimental evidence that yeast chromosome conformations are well described by a simple, random-walk polymer model. Using a combination of polymer physics theory and experiments on yeast cells, I will demonstrate that loss of polymer entropy due to chromosome looping is the driving force for homology search during repair of broken DNA by homologous recombination. I will also discuss the spread of histone modifications along the chromosome and away from the DNA break point in the context of simple physics models based on chromosome looping and kinase hopping, and show how combining physics theory and cell-biology experiment can be used to dissect the molecular mechanism of the spreading process. These examples demonstrate how combined theoretical and experimental studies can reveal physical principles of long-range communication in the nucleus, which play important roles in regulation of gene expression, DNA recombination, and chromatin modification. This work was supported by the NSF DMR-1206146.

Large-scale brain networks in affective and social neuroscience: Towards an integrative functional architecture of the brain

PubMed Central

Barrett, Lisa Feldman; Satpute, Ajay

2013-01-01

Understanding how a human brain creates a human mind ultimately depends on mapping psychological categories and concepts to physical measurements of neural response. Although it has long been assumed that emotional, social, and cognitive phenomena are realized in the operations of separate brain regions or brain networks, we demonstrate that it is possible to understand the body of neuroimaging evidence using a framework that relies on domain general, distributed structure-function mappings. We review current research in affective and social neuroscience and argue that the emerging science of large-scale intrinsic brain networks provides a coherent framework for a domain-general functional architecture of the human brain. PMID:23352202

A Systematic Global Mapping of the Radiation Field at Aviation Altitudes

NASA Technical Reports Server (NTRS)

Stassinopoulos, E. G.; Stauffer, C. A.; Brucker, G. J.

2003-01-01

This paper presents early results from aircraft measurements made by a Low-LET Radiation Spectrometer (LoLRS), as part of a long-range effort to study the complex dynamics of the atmospheric radiation field. For this purpose, a comprehensive data base is being generated to enable a multivariable global mapping (and eventually modeling) of doses and Linear-Energy-Transfer (LET) spectra at aviation altitudes. To accomplish this, a methodical collection of data from the LoLRS (and other instruments), is planned over extended periods of time, in a manner that complements some previous isolated and sporadic measurements by other workers, with the objective to generate a detailed long-range description of the cosmic-ray induced particle environment and to study its variability and dependence on atmospheric thickness, magnetic latitude, L-shell or rigidity, space weather, solar particle events, solar cycle effects, magnetic field variation, diurnal and seasonal effects, and atmospheric weather. Analysis of initial data indicates that the dose is rising with increasing altitude and increasing magnetic latitude. Comparison of total doses with predictions is in good agreement.

Schramm-Loewner evolution of the accessible perimeter of isoheight lines of correlated landscapes

NASA Astrophysics Data System (ADS)

Posé, N.; Schrenk, K. J.; Araújo, N. A. M.; Herrmann, H. J.

Real landscapes exhibit long-range height-height correlations, which are quantified by the Hurst exponent H. We give evidence that for negative H, in spite of the long-range nature of correlations, the statistics of the accessible perimeter of isoheight lines is compatible with Schramm-Loewner evolution curves and therefore can be mapped to random walks, their fractal dimension determining the diffusion constant. Analytic results are recovered for H=-1 and H=0 and a conjecture is proposed for the values in between. By contrast, for positive H, we find that the random walk is not Markovian but strongly correlated in time. Theoretical and practical implications are discussed.

The Implementation of Physics Problem Solving Strategy Combined with Concept Map in General Physics Course

NASA Astrophysics Data System (ADS)

Hidayati, H.; Ramli, R.

2018-04-01

This paper aims to provide a description of the implementation of Physic Problem Solving strategy combined with concept maps in General Physics learning at Department of Physics, Universitas Negeri Padang. Action research has been conducted in two cycles where each end of the cycle is reflected and improved for the next cycle. Implementation of Physics Problem Solving strategy combined with concept map can increase student activity in solving general physics problem with an average increase of 15% and can improve student learning outcomes from 42,7 in the cycle I become 62,7 in cycle II in general physics at the Universitas Negeri Padang. In the future, the implementation of Physic Problem Solving strategy combined with concept maps will need to be considered in Physics courses.

Vagus nerve stimulation during rehabilitative training improves forelimb strength following ischemic stroke.

PubMed

Khodaparast, N; Hays, S A; Sloan, A M; Hulsey, D R; Ruiz, A; Pantoja, M; Rennaker, R L; Kilgard, M P

2013-12-01

Upper limb impairment is a common debilitating consequence of ischemic stroke. Physical rehabilitation after stroke enhances neuroplasticity and improves limb function, but does not typically restore normal movement. We have recently developed a novel method that uses vagus nerve stimulation (VNS) paired with forelimb movements to drive specific, long-lasting map plasticity in rat primary motor cortex. Here we report that VNS paired with rehabilitative training can enhance recovery of forelimb force generation following infarction of primary motor cortex in rats. Quantitative measures of forelimb function returned to pre-lesion levels when VNS was delivered during rehab training. Intensive rehab training without VNS failed to restore function back to pre-lesion levels. Animals that received VNS during rehab improved twice as much as rats that received the same rehabilitation without VNS. VNS delivered during physical rehabilitation represents a novel method that may provide long-lasting benefits towards stroke recovery. © 2013.

Free-beam soliton self-compression in air

NASA Astrophysics Data System (ADS)

Voronin, A. A.; Mitrofanov, A. V.; Sidorov-Biryukov, D. A.; Fedotov, A. B.; Pugžlys, A.; Panchenko, V. Ya; Shumakova, V.; Ališauskas, S.; Baltuška, A.; Zheltikov, A. M.

2018-02-01

We identify a physical scenario whereby soliton transients generated in freely propagating laser beams within the regions of anomalous dispersion in air can be compressed as a part of their free-beam spatiotemporal evolution to yield few-cycle mid- and long-wavelength-infrared field waveforms, whose peak power is substantially higher than the peak power of the input pulses. We show that this free-beam soliton self-compression scenario does not require ionization or laser-induced filamentation, enabling high-throughput self-compression of mid- and long-wavelength-infrared laser pulses within a broad range of peak powers from tens of gigawatts up to the terawatt level. We also demonstrate that this method of pulse compression can be extended to long-range propagation, providing self-compression of high-peak-power laser pulses in atmospheric air within propagation ranges as long as hundreds of meters, suggesting new ways towards longer-range standoff detection and remote sensing.

Long-range ordered vorticity patterns in living tissue induced by cell division

NASA Astrophysics Data System (ADS)

Rossen, Ninna S.; Tarp, Jens M.; Mathiesen, Joachim; Jensen, Mogens H.; Oddershede, Lene B.

2014-12-01

In healthy blood vessels with a laminar blood flow, the endothelial cell division rate is low, only sufficient to replace apoptotic cells. The division rate significantly increases during embryonic development and under halted or turbulent flow. Cells in barrier tissue are connected and their motility is highly correlated. Here we investigate the long-range dynamics induced by cell division in an endothelial monolayer under non-flow conditions, mimicking the conditions during vessel formation or around blood clots. Cell divisions induce long-range, well-ordered vortex patterns extending several cell diameters away from the division site, in spite of the system’s low Reynolds number. Our experimental results are reproduced by a hydrodynamic continuum model simulating division as a local pressure increase corresponding to a local tension decrease. Such long-range physical communication may be crucial for embryonic development and for healing tissue, for instance around blood clots.

Correlations and enlarged superconducting phase of t -J⊥ chains of ultracold molecules on optical lattices

NASA Astrophysics Data System (ADS)

Manmana, Salvatore R.; Möller, Marcel; Gezzi, Riccardo; Hazzard, Kaden R. A.

2017-10-01

We compute physical properties across the phase diagram of the t -J⊥ chain with long-range dipolar interactions, which describe ultracold polar molecules on optical lattices. Our results obtained by the density-matrix renormalization group indicate that superconductivity is enhanced when the Ising component Jz of the spin-spin interaction and the charge component V are tuned to zero and even further by the long-range dipolar interactions. At low densities, a substantially larger spin gap is obtained. We provide evidence that long-range interactions lead to algebraically decaying correlation functions despite the presence of a gap. Although this has recently been observed in other long-range interacting spin and fermion models, the correlations in our case have the peculiar property of having a small and continuously varying exponent. We construct simple analytic models and arguments to understand the most salient features.

Emergent long-range synchronization of oscillating ecological populations without external forcing described by Ising universality

PubMed Central

Noble, Andrew E.; Machta, Jonathan; Hastings, Alan

2015-01-01

Understanding the synchronization of oscillations across space is fundamentally important to many scientific disciplines. In ecology, long-range synchronization of oscillations in spatial populations may elevate extinction risk and signal an impending catastrophe. The prevailing assumption is that synchronization on distances longer than the dispersal scale can only be due to environmental correlation (the Moran effect). In contrast, we show how long-range synchronization can emerge over distances much longer than the length scales of either dispersal or environmental correlation. In particular, we demonstrate that the transition from incoherence to long-range synchronization of two-cycle oscillations in noisy spatial population models is described by the Ising universality class of statistical physics. This result shows, in contrast to all previous work, how the Ising critical transition can emerge directly from the dynamics of ecological populations. PMID:25851364

Morphology of central California continental margin, revealed by long-range side-scan sonar (GLORIA)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardner, J.V.; McCulloch, D.S.; Eittreim, S.L.

1985-02-01

Leg 2 of the 4-leg USGS EEZ-SCAN 84 program used GLORIA long-range side-scan sonar to survey the region from Pt. Conception to just south of Pt. Arena, from the shelf break to the 200-nmi coverage. The overlapping digital sonographs were slant-range and anamorphically corrected, and a photomosaic of the sonographs was constructed at a scale of 1:375,000 (1 in. = 11.1 km). The underlying bed rock appears to be an important control in shaping the morphology of this margin. Several faults have sea-floor expression and lie subparallel to the margin. The density of canyons and gullies on the slope variesmore » from south to north, probably because of variations in the characteristics of the bed rock. The slope west of San Francisco is the most dissected segment of the central California slope. Monterey Fan is covered by large-scale bed forms (5-15 m amplitude and 1.5-2.0 km wavelength) over much of its surface. Monterey channel crosses southwestward across the fan, but abruptly turns south along a 40-km long surface fault that coincides with a well-mapped meander loop. The channel loops to the north then turns southward crossing the entire Monterey Fan, at its distal reaches, changes to a broad, braided pattern. Major slumps on the margin have long (> 30 km) scarps, some have slump folds, and one has a debris-flow deposit that can be acoustically traced for more than 75 km. Seventeen new seamounts were mapped. Taney Seamounts are large, rimmed, calderas with diameters of about 15 km each; these appear to be very large explosive or summit-collapse features.« less

PREFACE: 3rd International Workshop on Materials Analysis and Processing in Magnetic Fields (MAP3)

NASA Astrophysics Data System (ADS)

Sakka, Yoshio; Hirota, Noriyuki; Horii, Shigeru; Ando, Tsutomu

2009-07-01

The 3rd International Workshop on Materials Analysis and Processing in Materials Fields (MAP3) was held on 14-16 May 2008 at the University of Tokyo, Japan. The first was held in March 2004 at the National High Magnetic Field Laboratory in Tallahassee, USA. Two years later the second took place in Grenoble, France. MAP3 was held at The University of Tokyo International Symposium, and jointly with MANA Workshop on Materials Processing by External Stimulation, and JSPS CORE Program of Construction of the World Center on Electromagnetic Processing of Materials. At the end of MAP3 it was decided that the next MAP4 will be held in Atlanta, USA in 2010. Processing in magnetic fields is a rapidly expanding research area with a wide range of promising applications in materials science. MAP3 focused on the magnetic field interactions involved in the study and processing of materials in all disciplines ranging from physics to chemistry and biology: Magnetic field effects on chemical, physical, and biological phenomena Magnetic field effects on electrochemical phenomena Magnetic field effects on thermodynamic phenomena Magnetic field effects on hydrodynamic phenomena Magnetic field effects on crystal growth Magnetic processing of materials Diamagnetic levitation Magneto-Archimedes effect Spin chemistry Application of magnetic fields to analytical chemistry Magnetic orientation Control of structure by magnetic fields Magnetic separation and purification Magnetic field-induced phase transitions Materials properties in high magnetic fields Development of NMR and MRI Medical application of magnetic fields Novel magnetic phenomena Physical property measurement by Magnetic fields High magnetic field generation> MAP3 consisted of 84 presentations including 16 invited talks. This volume of Journal of Physics: Conference Series contains the proceeding of MAP3 with 34 papers that provide a scientific record of the topics covered by the conference with the special topics (13 papers) in the journal Science and Technology of Advanced Materials. All articles have been refereed by experts in the field. Both of these journals are fully accessible electronically and can be cited and referenced in the usual way. It is our hope that the reader will enjoy and profit from the MAP3 Proceedings. Hitoshi Wada (Kashiwa, Japan) Chair Eric Beaugon (Grenoble, France) Hans J Schneider-Muntau (Tallahassee, USA) Co-chair Advisory Board Shigeo Asai (Nagoya, Japan) Koichi Kitazawa (Tokyo, Japan) Mitsuhiro Motokawa (Sendai, Japan) Shoogo Ueno (Fukuoka, Japan) Robert Tournier (Grenoble, France) Justin Schwartz (Tallahassee, USA) J C Maan (Nijmegen, Netherland) Scientific Committee Yoshifumi Tanimoto (Hiroshima, Japan) Masuhiro Yamaguchi (Yokohama, Japan) Tsunehisa Kimura (Kyoto, Japan) Yoshio Sakka (Tsukuba Japan) Ryoichi Aogaki (Tokyo, Japan) Jyunji Miyakoshi (Hirosaki, Japan) Kazuo Watanabe (Sendai, Japan) James M Valles Jr. (Providence, USA) Joon Pyo Park (Pohang, Korea) Qiang Wang (Shenyang, China) Nicole Pamme (Hull, UK) Sophie Rivoirard (Grenoble, France) P C M Christianen (Nijmegen, Netherland) Local Organizing Committee Isao Yamamoto Masafumi Yamato Shigeru Horii Norihito Sogoshi Masateru Ikehata Noriyuki Hirota Tsutomu Ando Proceedings Editorial Board Yoshio Sakka Noriyuki Hirota Shigeru Horii Tsutomu Ando Conference photograph

Functional topography of single cortical cells: an intracellular approach combined with optical imaging.

PubMed

Buzás, P; Eysel, U T; Kisvárday, Z F

1998-11-01

Pyramidal cells mediating long-range corticocortical connections have been assumed to play an important role in visual perceptual mechanisms [C.D. Gilbert, Horizontal integration and cortical dynamics, Neuron 9 (1992) 1-13]. However, no information is available as yet on the specificity of individual pyramidal cells with respect to functional maps, e.g., orientation map. Here, we show a combination of techniques with which the functional topography of single pyramidal neurons can be explored in utmost detail. To this end, we used optical imaging of intrinsic signals followed by intracellular recording and staining with biocytin in vivo. The axonal and dendritic trees of the labelled neurons were reconstructed in three dimensions and aligned with corresponding functional orientation maps. The results indicate that, contrary to the sharp orientation tuning of neurons shown by the recorded spike activity, the efferent connections (axon terminal distribution) of the same pyramidal cells were found to terminate at a much broader range of orientations. Copyright 1998 Elsevier Science B.V.

Long-range repulsion of colloids driven by ion exchange and diffusiophoresis

PubMed Central

Florea, Daniel; Musa, Sami; Huyghe, Jacques M. R.; Wyss, Hans M.

2014-01-01

Interactions between surfaces and particles in aqueous suspension are usually limited to distances smaller than 1 μm. However, in a range of studies from different disciplines, repulsion of particles has been observed over distances of up to hundreds of micrometers, in the absence of any additional external fields. Although a range of hypotheses have been suggested to account for such behavior, the physical mechanisms responsible for the phenomenon still remain unclear. To identify and isolate these mechanisms, we perform detailed experiments on a well-defined experimental system, using a setup that minimizes the effects of gravity and convection. Our experiments clearly indicate that the observed long-range repulsion is driven by a combination of ion exchange, ion diffusion, and diffusiophoresis. We develop a simple model that accounts for our data; this description is expected to be directly applicable to a wide range of systems exhibiting similar long-range forces. PMID:24748113

Novel Quantum Criticality in Two Dimensional Topological Phase transitions

PubMed Central

Cho, Gil Young; Moon, Eun-Gook

2016-01-01

Topological quantum phase transitions intrinsically intertwine self-similarity and topology of many-electron wave-functions, and divining them is one of the most significant ways to advance understanding in condensed matter physics. Our focus is to investigate an unconventional class of the transitions between insulators and Dirac semimetals whose description is beyond conventional pseudo relativistic Dirac Hamiltonian. At the transition without the long-range Coulomb interaction, the electronic energy dispersion along one direction behaves like a relativistic particle, linear in momentum, but along the other direction it behaves like a non-relativistic particle, quadratic in momentum. Various physical systems ranging from TiO2-VO2 heterostructure to organic material α-(BEDT-TTF)2I3 under pressure have been proposed to have such anisotropic dispersion relation. Here, we discover a novel quantum criticality at the phase transition by incorporating the long range Coulomb interaction. Unique interplay between the Coulomb interaction and electronic critical modes enforces not only the anisotropic renormalization of the Coulomb interaction but also marginally modified electronic excitation. In connection with experiments, we investigate several striking effects in physical observables of our novel criticality. PMID:26791803

Long range transport of colloids in aqueous solutions

NASA Astrophysics Data System (ADS)

Florea, Daniel; Musa, Sami; Huyghe, Jacques M. R. J.; Wyss, Hans M.

2013-03-01

Colloids in aqueous suspensions can experience strong, extremely long range repulsive forces near interfaces such as biological tissues, gels, ion exchange resins or metals. As a result exclusion zones extending over several millimeters can be formed. While this phenomenon has been previously described, a physical understanding of this process is still lacking. This exclusion zone formation is puzzling because the typical forces acting on colloidal particles are limited to much shorter distances and external fields that could drive the particles are absent. Here we study the exclusion zone formation in detail by following the time and distance-dependent forces acting on the particles. We present a simple model that accounts for our experimental data and directly links the exclusion zone formation to an already known physical transport phenomenon. We show that the effect can be tuned by changing the zeta potential of the particles or by varying the species present in the aqueous solution. We thus provide a direct physical explanation for the intriguing exclusion zone formation and we illustrate how this effect can be exploited in a range of industrial applications.

Bayesian Analysis of Non-Gaussian Long-Range Dependent Processes

NASA Astrophysics Data System (ADS)

Graves, T.; Franzke, C.; Gramacy, R. B.; Watkins, N. W.

2012-12-01

Recent studies have strongly suggested that surface temperatures exhibit long-range dependence (LRD). The presence of LRD would hamper the identification of deterministic trends and the quantification of their significance. It is well established that LRD processes exhibit stochastic trends over rather long periods of time. Thus, accurate methods for discriminating between physical processes that possess long memory and those that do not are an important adjunct to climate modeling. We have used Markov Chain Monte Carlo algorithms to perform a Bayesian analysis of Auto-Regressive Fractionally-Integrated Moving-Average (ARFIMA) processes, which are capable of modeling LRD. Our principal aim is to obtain inference about the long memory parameter, d,with secondary interest in the scale and location parameters. We have developed a reversible-jump method enabling us to integrate over different model forms for the short memory component. We initially assume Gaussianity, and have tested the method on both synthetic and physical time series such as the Central England Temperature. Many physical processes, for example the Faraday time series from Antarctica, are highly non-Gaussian. We have therefore extended this work by weakening the Gaussianity assumption. Specifically, we assume a symmetric α -stable distribution for the innovations. Such processes provide good, flexible, initial models for non-Gaussian processes with long memory. We will present a study of the dependence of the posterior variance σ d of the memory parameter d on the length of the time series considered. This will be compared with equivalent error diagnostics for other measures of d.

Topological data analysis of contagion maps for examining spreading processes on networks.

PubMed

Taylor, Dane; Klimm, Florian; Harrington, Heather A; Kramár, Miroslav; Mischaikow, Konstantin; Porter, Mason A; Mucha, Peter J

2015-07-21

Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth's surface; however, in modern contagions long-range edges-for example, due to airline transportation or communication media-allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct 'contagion maps' that use multiple contagions on a network to map the nodes as a point cloud. By analysing the topology, geometry and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modelling, forecast and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks.

Topological data analysis of contagion maps for examining spreading processes on networks

NASA Astrophysics Data System (ADS)

Taylor, Dane; Klimm, Florian; Harrington, Heather A.; Kramár, Miroslav; Mischaikow, Konstantin; Porter, Mason A.; Mucha, Peter J.

2015-07-01

Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth's surface; however, in modern contagions long-range edges--for example, due to airline transportation or communication media--allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct `contagion maps' that use multiple contagions on a network to map the nodes as a point cloud. By analysing the topology, geometry and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modelling, forecast and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks.

Correlated full-field and pointwise temporally resolved measurements of thermomechanical stress inside an operating power transistor

NASA Astrophysics Data System (ADS)

Borza, Dan N.; Gautrelet, Christophe

2015-01-01

The paper describes a measurement system based on time-resolved speckle interferometry, able to record long series of thermally induced full-field deformation maps of die and wire bonds inside an operating power transistor. The origin of the deformation is the transistor heating during its normal operation. The full-field results consist in completely unwrapped deformation maps for out-of-plane displacements greater than 14 μm, with nanometer resolution, in presence of discontinuities due to structural and material inhomogeneity. These measurements are synchronized with the measurement of heatsink temperature and of base-emitter junction temperature, so as to provide data related to several interacting physical parameters. The temporal histories of the displacement are also accessible for any point. They are correlated with the thermal and electrical time series. Mechanical full-field curvatures may also be estimated, making these measurements useful for inspecting physical origins of thermomechanical stresses and for interacting with numerical models used in reliability-related studies.

Extended Intermarker Linkage Disequilibrium in the Afrikaners

PubMed Central

Hall, Diana; Wijsman, Ellen M.; Roos, J. Louw; Gogos, Joseph A.; Karayiorgou, Maria

2002-01-01

In this study we conducted an investigation of the background level of linkage disequilibrium (LD) in the Afrikaner population to evaluate the appropriateness of this genetic isolate for mapping complex traits. We analyzed intermarker LD in 62 nuclear families using microsatellite markers covering extended chromosomal regions. The markers were selected to allow the first direct comparison of long-range LD in the Afrikaners to LD in other demographic groups. Using several statistical measures, we find significant evidence for LD in the Afrikaners extending remarkably over a 6-cM range. In contrast, LD decays significantly beyond 3-cM distances in the other founder and outbred populations examined. This study strongly supports the appropriateness of the Afrikaner population for genome-wide scans that exploit LD to map common, multigenic disorders. PMID:12045148

Extended intermarker linkage disequilibrium in the Afrikaners.

PubMed

Hall, Diana; Wijsman, Ellen M; Roos, J Louw; Gogos, Joseph A; Karayiorgou, Maria

2002-06-01

In this study we conducted an investigation of the background level of linkage disequilibrium (LD) in the Afrikaner population to evaluate the appropriateness of this genetic isolate for mapping complex traits. We analyzed intermarker LD in 62 nuclear families using microsatellite markers covering extended chromosomal regions. The markers were selected to allow the first direct comparison of long-range LD in the Afrikaners to LD in other demographic groups. Using several statistical measures, we find significant evidence for LD in the Afrikaners extending remarkably over a 6-cM range. In contrast, LD decays significantly beyond 3-cM distances in the other founder and outbred populations examined. This study strongly supports the appropriateness of the Afrikaner population for genome-wide scans that exploit LD to map common, multigenic disorders.

A Basketball Court-Size Global Map of Mars for Education and Public Outreach

NASA Astrophysics Data System (ADS)

Hill, J. R.; Christensen, P. R.

2017-12-01

The Thermal Emission Imaging System (THEMIS) onboard the 2001 Mars Odyssey spacecraft has acquired over 220,000 infrared images of the Martian surface at a resolution of 100 m/pixel since the start of science operations in February 2002. A global map was previously developed by mosaicking together over 24,000 high-quality full-resolution THEMIS daytime infrared images. Although the resulting map has been extremely valuable for scientific and mission operations applications, it has been difficult to communicate this value to students, citizen scientists and the general public, since their interactions with the map have been limited to computer-based geographic information system (GIS) interfaces. We determined that, in order to better communicate the value and importance of mapping the entire Martian surface at this resolution, people need to be able to physically interact with the map and experience its full scale. Therefore, the THEMIS Day IR Global Mosaic with Colorized MOLA Elevation will be printed on a 45ft x 90ft vinyl mat, which will allow observers to walk across and physically experience the map at approximately full resolution (printed at 200 pixels per inch). The size of the map was chosen to fit on a standard high school basketball court, so that a large number of schools will have a sufficiently large indoor surface on which to display the map for education events. The vinyl material and printing process selected for the map have been proven to be wear-resistant in similar applications, as long as everyone who walks on the map wears socks or similarly soft foot coverings. In order to make transportation easier, the map will be printed in two 45ft x 45ft sections, which will be joined together at events to create the full 45ft x 90ft map. The final stages of the map production will take place in early fall 2017, followed by initial education events at Arizona State University and local schools to test the educational activities associated with the map. This project was partially inspired by the National Geographic Society's Giant Traveling Maps Program, was completed with the assistance of the Arizona Geographic Alliance, and was largely funded through the Arizona State University School of Earth and Space Exploration (SESE) Summer Exploration Graduate Fellowship program.

Cell type-specific long-range connections of basal forebrain circuit.

PubMed

Do, Johnny Phong; Xu, Min; Lee, Seung-Hee; Chang, Wei-Cheng; Zhang, Siyu; Chung, Shinjae; Yung, Tyler J; Fan, Jiang Lan; Miyamichi, Kazunari; Luo, Liqun; Dan, Yang

2016-09-19

The basal forebrain (BF) plays key roles in multiple brain functions, including sleep-wake regulation, attention, and learning/memory, but the long-range connections mediating these functions remain poorly characterized. Here we performed whole-brain mapping of both inputs and outputs of four BF cell types - cholinergic, glutamatergic, and parvalbumin-positive (PV+) and somatostatin-positive (SOM+) GABAergic neurons - in the mouse brain. Using rabies virus -mediated monosynaptic retrograde tracing to label the inputs and adeno-associated virus to trace axonal projections, we identified numerous brain areas connected to the BF. The inputs to different cell types were qualitatively similar, but the output projections showed marked differences. The connections to glutamatergic and SOM+ neurons were strongly reciprocal, while those to cholinergic and PV+ neurons were more unidirectional. These results reveal the long-range wiring diagram of the BF circuit with highly convergent inputs and divergent outputs and point to both functional commonality and specialization of different BF cell types.

Topography of the Duchenne muscular dystrophy (DMD) gene: FIGE and cDNA analysis of 194 cases reveals 115 deletions and 13 duplications.

PubMed Central

Den Dunnen, J T; Grootscholten, P M; Bakker, E; Blonden, L A; Ginjaar, H B; Wapenaar, M C; van Paassen, H M; van Broeckhoven, C; Pearson, P L; van Ommen, G J

1989-01-01

We have studied 34 Becker and 160 Duchenne muscular dystrophy (DMD) patients with the dystrophin cDNA, using conventional blots and FIGE analysis. One hundred twenty-eight mutations (65%) were found, 115 deletions and 13 duplications, of which 106 deletions and 11 duplications could be precisely mapped in relation to both the mRNA and the major and minor mutation hot spots. Junction fragments, ideal markers for carrier detection, were found in 23 (17%) of the 128 cases. We identified eight new cDNA RFLPs within the DMD gene. With the use of cDNA probes we have completed the long-range map of the DMD gene, by the identification of a 680-kb SfiI fragment containing the gene's 3' end. The size of the DMD gene is now determined to be about 2.3 million basepairs. The combination of cDNA hybridizations with long-range analysis of deletion and duplication patients yields a global picture of the exon spacing within the dystrophin gene. The gene shows a large variability of intron size, ranging from only a few kilobases to 160-180 kb for the P20 intron. Images Figure 1 Figure 4 PMID:2573997

Gravity, aeromagnetic and rock-property data of the central California Coast Ranges

USGS Publications Warehouse

Langenheim, V.E.

2014-01-01

Gravity, aeromagnetic, and rock-property data were collected to support geologic-mapping, water-resource, and seismic-hazard studies for the central California Coast Ranges. These data are combined with existing data to provide gravity, aeromagnetic, and physical-property datasets for this region. The gravity dataset consists of approximately 18,000 measurements. The aeromagnetic dataset consists of total-field anomaly values from several detailed surveys that have been merged and gridded at an interval of 200 m. The physical property dataset consists of approximately 800 density measurements and 1,100 magnetic-susceptibility measurements from rock samples, in addition to previously published borehole gravity surveys from Santa Maria Basin, density logs from Salinas Valley, and intensities of natural remanent magnetization.

Coastal vulnerability assessment of Dry Tortugas National Park (DRTO) to sea-level rise

USGS Publications Warehouse

Pendleton, Elizabeth A.; Thieler, E. Robert; Williams, S. Jeffress

2005-01-01

A coastal vulnerability index (CVI) was used to map the relative vulnerability of the coast to future sea-level rise within Dry Tortugas National Park in Florida. The CVI ranks the following in terms of their physical contribution to sea-level rise-related coastal change: geomorphology, regional coastal slope, rate of relative sea-level rise, historical shoreline change rates, mean tidal range and mean significant wave height. The rankings for each input variable were combined and an index value calculated for 1-minute grid cells covering the park. The CVI highlights those regions where the physical effects of sea-level rise might be the greatest. This approach combines the coastal system's susceptibility to change with its natural ability to adapt to changing environmental conditions, yielding a quantitative, although relative, measure of the park's natural vulnerability to the effects of sea-level rise. The CVI provides an objective technique for evaluation and long-term planning by scientists and park managers. Dry Tortugas National Park (DRTO) consists of relatively stable to washover-dominated portions of carbonate beach and man-made fortification. The areas within Dry Tortugas that are likely to be most vulnerable to sea-level rise are those with the highest rates of shoreline erosion and the highest wave energy.

Coastal vulnerability assessment of Cape Hatteras National Seashore (CAHA) to sea-level rise

USGS Publications Warehouse

Pendleton, Elizabeth A.; Theiler, E. Robert; Williams, S. Jeffress

2005-01-01

A coastal vulnerability index (CVI) was used to map the relative vulnerability of the coast to future sea-level rise within Cape Hatteras National Seashore (CAHA) in North Carolina. The CVI ranks the following in terms of their physical contribution to sea-level rise-related coastal change: geomorphology, regional coastal slope, rate of relative sea-level rise, historical shoreline change rates, mean tidal range, and mean significant wave height. The rankings for each variable were combined and an index value was calculated for 1-minute grid cells covering the park. The CVI highlights those regions where the physical effects of sea-level rise might be the greatest. This approach combines the coastal system's susceptibility to change with its natural ability to adapt to changing environmental conditions, yielding a quantitative, although relative, measure of the park's natural vulnerability to the effects of sea-level rise. The CVI provides an objective technique for evaluation and long-term planning by scientists and park managers. Cape Hatteras National Seashore consists of stable and washover dominated segments of barrier beach backed by wetland and marsh. The areas within Cape Hatteras that are likely to be most vulnerable to sea-level rise are those with the highest occurrence of overwash and the highest rates of shoreline change.

Coastal Vulnerability Assessment of Padre Island National Seashore (PAIS) to Sea-Level Rise

USGS Publications Warehouse

Pendleton, Elizabeth A.; Thieler, E. Robert; Williams, S. Jeffress; Beavers, Rebecca S.

2004-01-01

A coastal vulnerability index (CVI) was used to map the relative vulnerability of the coast to future sea-level rise within Padre Island National Seashore in Texas. The CVI ranks the following in terms of their physical contribution to sea-level rise-related coastal change: geomorphology, regional coastal slope, rate of relative sea-level rise, shoreline change rates, mean tidal range and mean significant wave height. The rankings for each variable were combined and an index value calculated for 1-minute grid cells covering the park. The CVI highlights those regions where the physical effects of sea-level rise might be the greatest. This approach combines the coastal system's susceptibility to change with its natural ability to adapt to changing environmental conditions, yielding a quantitative, although relative, measure of the park's natural vulnerability to the effects of sea-level rise. The CVI provides an objective technique for evaluation and long-term planning by scientists and park managers. Padre Island National Seashore consists of stable to washover dominated portions of barrier beach backed by wetland, marsh, tidal flat, or grassland. The areas within Padre that are likely to be most vulnerable to sea-level rise are those with the highest occurrence of overwash and the highest rates of shoreline change.

European Marine Observation Data Network - EMODnet Physics

NASA Astrophysics Data System (ADS)

Manzella, Giuseppe M. R.; Novellino, Antonio; D'Angelo, Paolo; Gorringe, Patrick; Schaap, Dick; Pouliquen, Sylvie; Loubrieu, Thomas; Rickards, Lesley

2015-04-01

The EMODnet-Physics portal (www.emodnet-physics.eu) makes layers of physical data and their metadata available for use and contributes towards the definition of an operational European Marine Observation and Data Network (EMODnet). It is based on a strong collaboration between EuroGOOS associates and its regional operational systems (ROOSs), and it is bringing together two very different marine communities: the "real time" ocean observing institute/centers and the National Oceanographic Data Centres (NODCs) that are in charge of ocean data validation, quality check and update for marine environmental monitoring. The EMODnet-Physics is a Marine Observation and Data Information System that provides a single point of access to near real time and historical achieved data (www.emodnet-physics.eu/map) it is built on existing infrastructure by adding value and avoiding any unless complexity, it provides data access to users, it is aimed at attracting new data holders, better and more data. With a long-term vision for a pan European Ocean Observation System sustainability, the EMODnet-Physics is supporting the coordination of the EuroGOOS Regional components and the empowerment and improvement of their data management infrastructure. In turn, EMODnet-Physics already implemented high-level interoperability features (WMS, Web catalogue, web services, etc…) to facilitate connection and data exchange with the ROOS and the Institutes within the ROOSs (www.emodnet-physics.eu/services). The on-going EMODnet-Physics structure delivers environmental marine physical data from the whole Europe (wave height and period, temperature of the water column, wind speed and direction, salinity of the water column, horizontal velocity of the water column, light attenuation, and sea level) as monitored by fixed stations, ARGO floats, drifting buoys, gliders, and ferry-boxes. It does provide discovering of data sets (both NRT - near real time - and Historical data sets), visualization and free download of data from more than 1500 platforms. The portal is composed mainly of three sections: the Map, the Selection List and the Station Info Panel. The Map is the core of the EMODnet-Physics system: here the user can access all available data, customize the map visualization and set different display layers. It is also possible to interact with all the information on the map using the filters provided by the service that can be used to select the stations of interest depending on the type, physical parameters measured, the time period of the observations in the database of the system, country of origin, the water basin of reference. It is also possible to browse the data in time by means of the slider in the lower part of the page that allows the user to view the stations that recorded data in a particular time period. Finally, it is possible to change the standard map view with different layers that provide additional visual information on the status of the waters. The Station Info panel available from the main map by clicking on a single platform provides information on the measurements carried out by the station. Moreover, the system provides full interoperability with third-party software through WMS service, Web Service and Web catalogue in order to exchange data and products according to the most recent interop standards. Further developments will ensure the compatibility to the OGS-SWE (Sensor Web Enablement) standard for the description of sensors and related observations using OpenGIS specifications (SensorML, O&M, SOS). The full list of services is available at www.emodnet-physics.eu/services. The result is an excellent example of innovative technologies for providing open and free access to geo-referenced data for the creation of new advanced (operational) oceanography services.

Editors pp iii Effects of long-range magnetic interactions on DLA aggregation [rapid communication

NASA Astrophysics Data System (ADS)

Xu, Xiao-Jun; Cai, Ping-Gen; Ye, Quan-Lin; Xia, A.-Gen; Ye, Gao-Xiang

2005-04-01

An extra degree of freedom is introduced in the well-known diffusion-limited aggregation model, i.e., the growth entities are “spin” taking. The model with long-range magnetic interactions that decay as βC/rα on two-dimensional square lattices is studied for different values of α. This model leads to a wide variety of kinetic processes and morphology distribution with both the coupling energy βC and the range of the interactions, i.e., the exponent α. The simulated result of the model shows that the “quenching” of the degree of freedom on the cluster by the long-range magnetic interactions leads to branching or compactness, but, moreover, to combined geometric and physical “transitions” of the aggregations with the growth parameters.

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies.

PubMed

Tulpová, Zuzana; Luo, Ming-Cheng; Toegelová, Helena; Visendi, Paul; Hayashi, Satomi; Vojta, Petr; Paux, Etienne; Kilian, Andrzej; Abrouk, Michaël; Bartoš, Jan; Hajdúch, Marián; Batley, Jacqueline; Edwards, David; Doležel, Jaroslav; Šimková, Hana

2018-03-08

Bread wheat (Triticum aestivum L.) is a staple food for a significant part of the world's population. The growing demand on its production can be satisfied by improving yield and resistance to biotic and abiotic stress. Knowledge of the genome sequence would aid in discovering genes and QTLs underlying these traits and provide a basis for genomics-assisted breeding. Physical maps and BAC clones associated with them have been valuable resources from which to generate a reference genome of bread wheat and to assist map-based gene cloning. As a part of a joint effort coordinated by the International Wheat Genome Sequencing Consortium, we have constructed a BAC-based physical map of bread wheat chromosome arm 7DS consisting of 895 contigs and covering 94% of its estimated length. By anchoring BAC contigs to one radiation hybrid map and three high resolution genetic maps, we assigned 73% of the assembly to a distinct genomic position. This map integration, interconnecting a total of 1713 markers with ordered and sequenced BAC clones from a minimal tiling path, provides a tool to speed up gene cloning in wheat. The process of physical map assembly included the integration of the 7DS physical map with a whole-genome physical map of Aegilops tauschii and a 7DS Bionano genome map, which together enabled efficient scaffolding of physical-map contigs, even in the non-recombining region of the genetic centromere. Moreover, this approach facilitated a comparison of bread wheat and its ancestor at BAC-contig level and revealed a reconstructed region in the 7DS pericentromere. Copyright © 2018. Published by Elsevier B.V.

Assembly of YAC contigs on the long arm of human chromosome 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, J.; Fujiwara, T.M.; Wang, J.X.

1994-09-01

We have previously identified approximately 2,000 chromosome 2-specific YACs by screening the CEPH Mark I YAC library (`Midi- YACs`). Using STS content mapping, we have been able to order groups of these YACs along chromosome 2q. The four biggest YAC groups were associated with VIL (2q35), FN (2q34), PAX3 (2q36), ALPI (2q37) and contained 113, 107, 79, and 63 YACs, respectively. We have identified the minimal tiling paths for most YAC groups and determined the insert sizes of over 300 YACs. Furthermore, on human chromosome 2q31-q37, 15 microsatellite markers were linked to various expressed genes through overlapping YACs and themore » physical distance of microsatellites to expressed genes was determined. The precise mapping of a set of highly informative microsatellite markers with respect to known genes provides a useful tool for linkage studies and the identification of disease genes from the long arm of human chromosome 2.« less

Rapid geodesic mapping of brain functional connectivity: implementation of a dedicated co-processor in a field-programmable gate array (FPGA) and application to resting state functional MRI.

PubMed

Minati, Ludovico; Cercignani, Mara; Chan, Dennis

2013-10-01

Graph theory-based analyses of brain network topology can be used to model the spatiotemporal correlations in neural activity detected through fMRI, and such approaches have wide-ranging potential, from detection of alterations in preclinical Alzheimer's disease through to command identification in brain-machine interfaces. However, due to prohibitive computational costs, graph-based analyses to date have principally focused on measuring connection density rather than mapping the topological architecture in full by exhaustive shortest-path determination. This paper outlines a solution to this problem through parallel implementation of Dijkstra's algorithm in programmable logic. The processor design is optimized for large, sparse graphs and provided in full as synthesizable VHDL code. An acceleration factor between 15 and 18 is obtained on a representative resting-state fMRI dataset, and maps of Euclidean path length reveal the anticipated heterogeneous cortical involvement in long-range integrative processing. These results enable high-resolution geodesic connectivity mapping for resting-state fMRI in patient populations and real-time geodesic mapping to support identification of imagined actions for fMRI-based brain-machine interfaces. Copyright © 2013 IPEM. Published by Elsevier Ltd. All rights reserved.

Density functional theory study of the conformational space of an infinitely long polypeptide chain

NASA Astrophysics Data System (ADS)

Ireta, Joel; Scheffler, Matthias

2009-08-01

The backbone conformational space of infinitely long polyalanine is investigated with density-functional theory and mapping the potential energy surface in terms of (L, θ) cylindrical coordinates. A comparison of the obtained (L, θ) Ramachandran-like plot with results from an extended set of protein structures shows excellent conformity, with the exception of the polyproline II region. It is demonstrated the usefulness of infinitely long polypeptide models for investigating the influence of hydrogen bonding and its cooperative effect on the backbone conformations. The results imply that hydrogen bonding together with long-range electrostatics is the main actuator for most of the structures assumed by protein residues.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Yu; Li, Shunbo; Wen, Weijia, E-mail: phwen@ust.hk

A local area temperature monitor is important for precise control of chemical and biological processes in microfluidics. In this work, we developed a facile method to realize micron spatial resolution of temperature mapping in a microfluidic channel quickly and cost effectively. Based on the temperature dependent fluorescence emission of NaYF{sub 4}:Yb{sup 3+}, Er{sup 3+} upconversion nanoparticles (UCNPs) under near-infrared irradiation, ratio-metric imaging of UCNPs doped polydimethylsiloxane can map detailed temperature distribution in the channel. Unlike some reported strategies that utilize temperature sensitive organic dye (such as Rhodamine) to achieve thermal sensing, our method is highly chemically inert and physically stablemore » without any performance degradation in long term operation. Moreover, this method can be easily scaled up or down, since the spatial and temperature resolution is determined by an optical imaging system. Our method supplied a simple and efficient solution for temperature mapping on a heterogeneous surface where usage of an infrared thermal camera was limited.« less

Persistence Mapping Using EUV Solar Imager Data

NASA Technical Reports Server (NTRS)

Thompson, B. J.; Young, C. A.

2016-01-01

We describe a simple image processing technique that is useful for the visualization and depiction of gradually evolving or intermittent structures in solar physics extreme-ultraviolet imagery. The technique is an application of image segmentation, which we call "Persistence Mapping," to isolate extreme values in a data set, and is particularly useful for the problem of capturing phenomena that are evolving in both space and time. While integration or "time-lapse" imaging uses the full sample (of size N ), Persistence Mapping rejects (N - 1)/N of the data set and identifies the most relevant 1/N values using the following rule: if a pixel reaches an extreme value, it retains that value until that value is exceeded. The simplest examples isolate minima and maxima, but any quantile or statistic can be used. This paper demonstrates how the technique has been used to extract the dynamics in long-term evolution of comet tails, erupting material, and EUV dimming regions.

Quantum transport with long-range steps on Watts-Strogatz networks

NASA Astrophysics Data System (ADS)

Wang, Yan; Xu, Xin-Jian

2016-07-01

We study transport dynamics of quantum systems with long-range steps on the Watts-Strogatz network (WSN) which is generated by rewiring links of the regular ring. First, we probe physical systems modeled by the discrete nonlinear schrödinger (DNLS) equation. Using the localized initial condition, we compute the time-averaged occupation probability of the initial site, which is related to the nonlinearity, the long-range steps and rewiring links. Self-trapping transitions occur at large (small) nonlinear parameters for coupling ɛ=-1 (1), as long-range interactions are intensified. The structure disorder induced by random rewiring, however, has dual effects for ɛ=-1 and inhibits the self-trapping behavior for ɛ=1. Second, we investigate continuous-time quantum walks (CTQW) on the regular ring ruled by the discrete linear schrödinger (DLS) equation. It is found that only the presence of the long-range steps does not affect the efficiency of the coherent exciton transport, while only the allowance of random rewiring enhances the partial localization. If both factors are considered simultaneously, localization is greatly strengthened, and the transport becomes worse.

Sensory bases of navigation.

PubMed

Gould, J L

1998-10-08

Navigating animals need to know both the bearing of their goal (the 'map' step), and how to determine that direction (the 'compass' step). Compasses are typically arranged in hierarchies, with magnetic backup as a last resort when celestial information is unavailable. Magnetic information is often essential to calibrating celestial cues, though, and repeated recalibration between celestial and magnetic compasses is important in many species. Most magnetic compasses are based on magnetite crystals, but others make use of induction or paramagnetic interactions between short-wavelength light and visual pigments. Though odors may be used in some cases, most if not all long-range maps probably depend on magnetite. Magnetitebased map senses are used to measure only latitude in some species, but provide the distance and direction of the goal in others.

A first generation BAC-based physical map of the rainbow trout genome

PubMed Central

Palti, Yniv; Luo, Ming-Cheng; Hu, Yuqin; Genet, Carine; You, Frank M; Vallejo, Roger L; Thorgaard, Gary H; Wheeler, Paul A; Rexroad, Caird E

2009-01-01

Background Rainbow trout (Oncorhynchus mykiss) are the most-widely cultivated cold freshwater fish in the world and an important model species for many research areas. Coupling great interest in this species as a research model with the need for genetic improvement of aquaculture production efficiency traits justifies the continued development of genomics research resources. Many quantitative trait loci (QTL) have been identified for production and life-history traits in rainbow trout. A bacterial artificial chromosome (BAC) physical map is needed to facilitate fine mapping of QTL and the selection of positional candidate genes for incorporation in marker-assisted selection (MAS) for improving rainbow trout aquaculture production. This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species. Results The physical map was constructed from DNA fingerprinting of 192,096 BAC clones using the 4-color high-information content fingerprinting (HICF) method. The clones were assembled into physical map contigs using the finger-printing contig (FPC) program. The map is composed of 4,173 contigs and 9,379 singletons. The total number of unique fingerprinting fragments (consensus bands) in contigs is 1,185,157, which corresponds to an estimated physical length of 2.0 Gb. The map assembly was validated by 1) comparison with probe hybridization results and agarose gel fingerprinting contigs; and 2) anchoring large contigs to the microsatellite-based genetic linkage map. Conclusion The production and validation of the first BAC physical map of the rainbow trout genome is described in this paper. We are currently integrating this map with the NCCCWA genetic map using more than 200 microsatellites isolated from BAC end sequences and by identifying BACs that harbor more than 300 previously mapped markers. The availability of an integrated physical and genetic map will enable detailed comparative genome analyses, fine mapping of QTL, positional cloning, selection of positional candidate genes for economically important traits and the incorporation of MAS into rainbow trout breeding programs. PMID:19814815

Demonstration of centimeter-level precision, swath mapping, full-waveform laser altimetry from high altitude on the Global Hawk UAV for future application to cryospheric remote sensing

NASA Astrophysics Data System (ADS)

Blair, J. B.; Wake, S.; Rabine, D.; Hofton, M. A.; Mitchell, S.

2013-12-01

The Land Vegetation and Ice Sensor (LVIS) is a high-altitude, wide-swath laser altimeter that has, for over 15 years, demonstrated state-of-the-art performance in surface altimetry, including many aspects of remote sensing of the cryosphere such as precise topography of ice sheets and sea ice. NASA Goddard, in cooperation with NASA's Earth Science Technology Office (ESTO), has developed a new, more capable sensor that can operate autonomously from a high-altitude UAV aircraft to further enhance the LVIS capability and extend its reach and coverage. In June 2012, this latest sensor, known as LVIS-GH, was integrated onto NASA's Global Hawk aircraft and completed a successful high-altitude demonstration flight over Death Valley, Owens Valley, and the Sierra Nevada region of California. Data were collected over a wide variety of terrain types from 58,000' (> 17 km) altitude during the 6 hour long test flight. The full-waveform laser altimetry technique employed by LVIS and LVIS-GH provides precise surface topography measurements for solid earth and cryospheric applications and captures the vertical structure of forests in support of territorial ecology studies. LVIS-GH fully illuminates and maps a 4 km swath and provides cm-level range precision, as demonstrated in laboratory and horizontal range testing, as well as during this test flight. The cm range precision is notable as it applies to accurate measurements of sea ice freeboard and change detection of subtle surface deformation such as heaving in permafrost areas. In recent years, LVIS has primarily supported Operation IceBridge activities, including deployments to the Arctic and Antarctic on manned aircraft such as the NASA DC-8 and P-3. The LVIS-GH sensor provides an major upgrade of coverage capability and remote access; LVIS-GH operating on the long-duration Global Hawk aircraft can map up to 50,000 km^2 in a single flight and can provide access to remote regions such as the entirety of Antarctica. Future applications of LVIS-GH could include comprehensive mapping of cryosphere targets over large regions such as Alaska, Greenland, and Antarctica as well as an opportunity for seasonal mapping of sea and land ice. Data from the test flight will be presented along with accuracy assessment and specific examples of the cm-level range precision and wide swath mapping ability relevant to cryospheric remote sensing.

Arctic and subarctic environmental analyses utilizing ERTS-1 imagery

NASA Technical Reports Server (NTRS)

Anderson, D. M. (Principal Investigator); Mckim, H. L.; Gatto, L. W.; Haugen, R. K.; Crowder, W. K.; Slaughter, C. W.; Marlar, T. L.

1974-01-01

The author has identified the following significant results. ERTS-1 imagery provides a means of distinguishing and monitoring estuarine surface water circulation patterns and changes in the relative sediment load of discharging rivers on a regional basis. Physical boundaries mapped from ERTS-1 imagery in combination with ground truth obtained from existing small scale maps and other sources resulted in improved and more detailed maps of permafrost terrain and vegetation for the same area. Snowpack cover within a research watershed has been analyzed and compared to ground data. Large river icings along the proposed Alaska pipeline route from Prudhoe Bay to the Brooks Range have been monitored. Sea ice deformation and drift northeast of Point Barrow, Alaska have been measured during a four day period in March and shore-fast ice accumulation and ablation along the west coast of Alaska have been mapped for the spring and early summer seasons.

Fifty-year flood-inundation maps for Comayagua, Hondura

USGS Publications Warehouse

Kresch, David L.; Mastin, Mark C.; Olsen, T.D.

2002-01-01

After the devastating floods caused by Hurricane Mitch in 1998, maps of the areas and depths of the 50-year-flood inundation at 15 municipalities in Honduras were prepared as a tool for agencies involved in reconstruction and planning. This report, which is one in a series of 15, presents maps of areas in the municipality of Comayagua that would be inundated by 50-year floods on Rio Humuya and Rio Majada. Geographic Information System (GIS) coverages of the flood inundation are available on a computer in the municipality of Comayagua as part of the Municipal GIS project and on the Internet at the Flood Hazard Mapping Web page (http://mitchnts1.cr.usgs.gov/projects/floodhazard.html). These coverages allow users to view the flood inundation in much more detail than is possible using the maps in this report. Water-surface elevations for 50-year-floods on Rio Humuya and Rio Majada at Comayagua were estimated using HEC-RAS, a one-dimensional, steady-flow, step-backwater computer program. The channel and floodplain cross sections used in HEC-RAS were developed from an airborne light-detection-and-ranging (LIDAR) topographic survey of the area. The 50-year-flood discharge for Rio Humuya at Comayagua, 1,400 cubic meters per second, was estimated using a regression equation that relates the 50-year-flood discharge to drainage area and mean annual precipitation. The reasonableness of the regression discharge was evaluated by comparing it with drainage-area-adjusted 50-year-flood discharges estimated for three long-term Rio Humuya stream-gaging stations. The drainage-area-adjusted 50-year-flood discharges estimated from the gage records ranged from 946 to 1,365 cubic meters per second. Because the regression equation discharge agrees closely with the high end of the range of discharges estimated from the gaging-station records, it was used for the hydraulic modeling to ensure that the resulting 50-year-flood water-surface elevations would not be underestimated. The 50-year-flood discharge for Rio Majada at Comayagua (230 cubic meters per second) was estimated using the regression equation because there are no long-term gaging-stations on this river from which to estimate the discharge.

Exploring physics concepts among novice teachers through CMAP tools

NASA Astrophysics Data System (ADS)

Suprapto, N.; Suliyanah; Prahani, B. K.; Jauhariyah, M. N. R.; Admoko, S.

2018-03-01

Concept maps are graphical tools for organising, elaborating and representing knowledge. Through Cmap tools software, it can be explored the understanding and the hierarchical structuring of physics concepts among novice teachers. The software helps physics teachers indicated a physics context, focus questions, parking lots, cross-links, branching, hierarchy, and propositions. By using an exploratory quantitative study, a total 13-concept maps with different physics topics created by novice physics teachers were analysed. The main differences of scoring between lecturer and peer-teachers’ scoring were also illustrated. The study offered some implications, especially for physics educators to determine the hierarchical structure of the physics concepts, to construct a physics focus question, and to see how a concept in one domain of knowledge represented on the map is related to a concept in another domain shown on the map.

Long-term fragmentation effects on the distribution and dynamics of canopy gaps in a tropical montane forest

Treesearch

Nicholas R. Vaughn; Gregory P. Asner; Christian P. Giardina

2015-01-01

Fragmentation alters forest canopy structure through various mechanisms, which in turn drive subsequent changes to biogeochemical processes and biological diversity. Using repeated airborne LiDAR (Light Detection and Ranging) mappings, we investigated the size distribution and dynamics of forest canopy gaps across a topical montane forest landscape in Hawaii naturally...

Telling the story of tree species’ range shifts in a complex landscape

Treesearch

Sharon M. Stanton; Vicente J. Monleon; Heather E. Lintz; Joel Thompson

2015-01-01

The Forest Inventory and Analysis Program is the unrivaled source for long-term, spatially balanced, publicly available data. FIA will continue to be providers of data, but the program is growing and adapting, including a shift in how we communicate information and knowledge derived from those data. Online applications, interactive mapping, and infographics provide...

Localization of Allotetraploid Gossypium SNPs Using Physical Mapping Resources

USDA-ARS?s Scientific Manuscript database

Recent efforts in Gossypium SNP development have produced thousands of putative SNPs for G. barbadense, G. mustelinum, and G. tomentosum relative to G. hirsutum. Here we report on current efforts to localize putative SNPs using physical mapping resources. Recent advances in physical mapping resour...

Ningaloo Reef: Shallow Marine Habitats Mapped Using a Hyperspectral Sensor

PubMed Central

Kobryn, Halina T.; Wouters, Kristin; Beckley, Lynnath E.; Heege, Thomas

2013-01-01

Research, monitoring and management of large marine protected areas require detailed and up-to-date habitat maps. Ningaloo Marine Park (including the Muiron Islands) in north-western Australia (stretching across three degrees of latitude) was mapped to 20 m depth using HyMap airborne hyperspectral imagery (125 bands) at 3.5 m resolution across the 762 km2 of reef environment between the shoreline and reef slope. The imagery was corrected for atmospheric, air-water interface and water column influences to retrieve bottom reflectance and bathymetry using the physics-based Modular Inversion and Processing System. Using field-validated, image-derived spectra from a representative range of cover types, the classification combined a semi-automated, pixel-based approach with fuzzy logic and derivative techniques. Five thematic classification levels for benthic cover (with probability maps) were generated with varying degrees of detail, ranging from a basic one with three classes (biotic, abiotic and mixed) to the most detailed with 46 classes. The latter consisted of all abiotic and biotic seabed components and hard coral growth forms in dominant or mixed states. The overall accuracy of mapping for the most detailed maps was 70% for the highest classification level. Macro-algal communities formed most of the benthic cover, while hard and soft corals represented only about 7% of the mapped area (58.6 km2). Dense tabulate coral was the largest coral mosaic type (37% of all corals) and the rest of the corals were a mix of tabulate, digitate, massive and soft corals. Our results show that for this shallow, fringing reef environment situated in the arid tropics, hyperspectral remote sensing techniques can offer an efficient and cost-effective approach to mapping and monitoring reef habitats over large, remote and inaccessible areas. PMID:23922921

VISIONS - Vista Star Formation Atlas

NASA Astrophysics Data System (ADS)

Meingast, Stefan; Alves, J.; Boui, H.; Ascenso, J.

2017-06-01

In this talk I will present the new ESO public survey VISIONS. Starting in early 2017 we will use the ESO VISTA survey telescope in a 550 h long programme to map the largest molecular cloud complexes within 500 pc in a multi-epoch program. The survey is optimized for measuring the proper motions of young stellar objects invisible to Gaia and mapping the cloud-structure with extinction. VISIONS will address a series of ISM topics ranging from the connection of dense cores to YSOs and the dynamical evolution of embedded clusters to variations in the reddening law on both small and large scales.

Reconnaissance bedrock geology of the southeastern part of the Kenai quadrangle, Alaska: A section in Geologic studies in Alaska by the U.S. Geological Survey, 1998

USGS Publications Warehouse

Bradley, Dwight C.; Wilson, Frederic H.

2000-01-01

We present a new reconnaissance geologic map of the southeastern part of the Kenai quadrangle that improves on previously published maps. Melange of the McHugh Complex is now known to form a continuous strike belt that can be traced from the Seldovia to the Valdez quadrangle; a problematic 75-km-long gap in the McHugh Complex in the Kenai and Seldovia quadrangles does not exist. An Eocene near-trench pluton underlies a range of nunataks in Harding Icefield.

On the merging of optical and SAR satellite imagery for surface water mapping applications

NASA Astrophysics Data System (ADS)

Markert, Kel N.; Chishtie, Farrukh; Anderson, Eric R.; Saah, David; Griffin, Robert E.

2018-06-01

Optical and Synthetic Aperture Radar (SAR) imagery from satellite platforms provide a means to discretely map surface water; however, the application of the two data sources in tandem has been inhibited by inconsistent data availability, the distinct physical properties that optical and SAR instruments sense, and dissimilar data delivery platforms. In this paper, we describe a preliminary methodology for merging optical and SAR data into a common data space. We apply our approach over a portion of the Mekong Basin, a region with highly variable surface water cover and persistent cloud cover, for surface water applications requiring dense time series analysis. The methods include the derivation of a representative index from both sensors that transforms data from disparate physical units (reflectance and backscatter) to a comparable dimensionless space applying a consistent water extraction approach to both datasets. The merging of optical and SAR data allows for increased observations in cloud prone regions that can be used to gain additional insight into surface water dynamics or flood mapping applications. This preliminary methodology shows promise for a common optical-SAR water extraction; however, data ranges and thresholding values can vary depending on data source, yielding classification errors in the resulting surface water maps. We discuss some potential future approaches to address these inconsistencies.

Genome-wide recombination rate variation in a recombination map of cotton.

PubMed

Shen, Chao; Li, Ximei; Zhang, Ruiting; Lin, Zhongxu

2017-01-01

Recombination is crucial for genetic evolution, which not only provides new allele combinations but also influences the biological evolution and efficacy of natural selection. However, recombination variation is not well understood outside of the complex species' genomes, and it is particularly unclear in Gossypium. Cotton is the most important natural fibre crop and the second largest oil-seed crop. Here, we found that the genetic and physical maps distances did not have a simple linear relationship. Recombination rates were unevenly distributed throughout the cotton genome, which showed marked changes along the chromosome lengths and recombination was completely suppressed in the centromeric regions. Recombination rates significantly varied between A-subgenome (At) (range = 1.60 to 3.26 centimorgan/megabase [cM/Mb]) and D-subgenome (Dt) (range = 2.17 to 4.97 cM/Mb), which explained why the genetic maps of At and Dt are similar but the physical map of Dt is only half that of At. The translocation regions between A02 and A03 and between A04 and A05, and the inversion regions on A10, D10, A07 and D07 indicated relatively high recombination rates in the distal regions of the chromosomes. Recombination rates were positively correlated with the densities of genes, markers and the distance from the centromere, and negatively correlated with transposable elements (TEs). The gene ontology (GO) categories showed that genes in high recombination regions may tend to response to environmental stimuli, and genes in low recombination regions are related to mitosis and meiosis, which suggested that they may provide the primary driving force in adaptive evolution and assure the stability of basic cell cycle in a rapidly changing environment. Global knowledge of recombination rates will facilitate genetics and breeding in cotton.

Genome-wide recombination rate variation in a recombination map of cotton

PubMed Central

Shen, Chao; Li, Ximei; Zhang, Ruiting

2017-01-01

Recombination is crucial for genetic evolution, which not only provides new allele combinations but also influences the biological evolution and efficacy of natural selection. However, recombination variation is not well understood outside of the complex species’ genomes, and it is particularly unclear in Gossypium. Cotton is the most important natural fibre crop and the second largest oil-seed crop. Here, we found that the genetic and physical maps distances did not have a simple linear relationship. Recombination rates were unevenly distributed throughout the cotton genome, which showed marked changes along the chromosome lengths and recombination was completely suppressed in the centromeric regions. Recombination rates significantly varied between A-subgenome (At) (range = 1.60 to 3.26 centimorgan/megabase [cM/Mb]) and D-subgenome (Dt) (range = 2.17 to 4.97 cM/Mb), which explained why the genetic maps of At and Dt are similar but the physical map of Dt is only half that of At. The translocation regions between A02 and A03 and between A04 and A05, and the inversion regions on A10, D10, A07 and D07 indicated relatively high recombination rates in the distal regions of the chromosomes. Recombination rates were positively correlated with the densities of genes, markers and the distance from the centromere, and negatively correlated with transposable elements (TEs). The gene ontology (GO) categories showed that genes in high recombination regions may tend to response to environmental stimuli, and genes in low recombination regions are related to mitosis and meiosis, which suggested that they may provide the primary driving force in adaptive evolution and assure the stability of basic cell cycle in a rapidly changing environment. Global knowledge of recombination rates will facilitate genetics and breeding in cotton. PMID:29176878

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS

PubMed Central

2010-01-01

Background Physical maps employing libraries of bacterial artificial chromosome (BAC) clones are essential for comparative genomics and sequencing of large and repetitive genomes such as those of the hexaploid bread wheat. The diploid ancestor of the D-genome of hexaploid wheat (Triticum aestivum), Aegilops tauschii, is used as a resource for wheat genomics. The barley diploid genome also provides a good model for the Triticeae and T. aestivum since it is only slightly larger than the ancestor wheat D genome. Gene co-linearity between the grasses can be exploited by extrapolating from rice and Brachypodium distachyon to Ae. tauschii or barley, and then to wheat. Results We report the use of Ae. tauschii for the construction of the physical map of a large distal region of chromosome arm 3DS. A physical map of 25.4 Mb was constructed by anchoring BAC clones of Ae. tauschii with 85 EST on the Ae. tauschii and barley genetic maps. The 24 contigs were aligned to the rice and B. distachyon genomic sequences and a high density SNP genetic map of barley. As expected, the mapped region is highly collinear to the orthologous chromosome 1 in rice, chromosome 2 in B. distachyon and chromosome 3H in barley. However, the chromosome scale of the comparative maps presented provides new insights into grass genome organization. The disruptions of the Ae. tauschii-rice and Ae. tauschii-Brachypodium syntenies were identical. We observed chromosomal rearrangements between Ae. tauschii and barley. The comparison of Ae. tauschii physical and genetic maps showed that the recombination rate across the region dropped from 2.19 cM/Mb in the distal region to 0.09 cM/Mb in the proximal region. The size of the gaps between contigs was evaluated by comparing the recombination rate along the map with the local recombination rates calculated on single contigs. Conclusions The physical map reported here is the first physical map using fingerprinting of a complete Triticeae genome. This study demonstrates that global fingerprinting of the large plant genomes is a viable strategy for generating physical maps. Physical maps allow the description of the co-linearity between wheat and grass genomes and provide a powerful tool for positional cloning of new genes. PMID:20553621

Geologic and mineral and water resources investigations in western Colorado, using Skylab EREP data

NASA Technical Reports Server (NTRS)

Lee, K. (Principal Investigator); Hutchinson, R. M.; Prost, G. L.; Sawatzky, D. L.; Spoelhof, R. W.; Thigpen, J. B.

1974-01-01

The author has identified the following significant results. Discovery of three major north-trending, throughgoing faults in the Front Range, previously mapped only as isolated segments, demonstrates the utility of space photography and may lead to reinterpretation of the Front Range tectonic style. Faulting and alteration appear to be the most useful indicators of mineralization in central Colorado. These phenomena appear on Skylab photography as tonal lineaments and color anomalies. Twenty-three lineaments have been mapped in the San Juan Mountains, the longest of which is 156 km long. Twelve lineaments intersect or are tangent to calderas. Intrusive domes are aligned along lineaments, but calderas appear to occur at the intersections of major lineaments. Lineaments can be recognized on some EREP passes but not on other passes over the same area. The difference is attributed to solar elevation effects. Bedding attitudes can be photogeologically estimated down to surprisingly low dips, on the order of + or - 1-2 deg, and attitudes can be subdivided easily into quantitative groups. The primary application of Skylab photography to geologic mapping in montane areas is clearly limited to regional mapping at scales smaller than 1:24,000.

Learning about a Level Physics Students' Understandings of Particle Physics Using Concept Mapping

ERIC Educational Resources Information Center

Gourlay, H.

2017-01-01

This paper describes a small-scale piece of research using concept mapping to elicit A level students' understandings of particle physics. Fifty-nine year 12 (16- and 17 year-old) students from two London schools participated. The exercise took place during school physics lessons. Students were instructed how to make a concept map and were…

Big Data, Small Data: Accessing and Manipulating Geoscience Data Ranging From Repositories to Student-Collected Data Sets Using GeoMapApp

NASA Astrophysics Data System (ADS)

Goodwillie, A. M.

2015-12-01

We often demand information and data to be accessible over the web at no cost, and no longer do we expect to spend time labouriously compiling data from myriad sources with frustratingly-different formats. Instead, we increasingly expect convenience and consolidation. Recent advances in web-enabled technologies and cyberinfrastructure are answering those calls by providing data tools and resources that can transform undergraduate education. By freeing up valuable classroom time, students can focus upon gaining deeper insights and understanding from real-world data. GeoMapApp (http://www.geomapapp.org) is a map-based data discovery and visualisation tool developed at Lamont-Doherty Earth Observatory. GeoMapApp promotes U-Learning by working across all major computer platforms and functioning anywhere with internet connectivity, by lowering socio-economic barriers (it is free), by seamlessly integrating thousands of built-in research-grade data sets under intuitive menus, and by being adaptable to a range of learning environments - from lab sessions, group projects, and homework assignments to in-class pop-ups. GeoMapApp caters to casual and specialist users alike. Contours, artificial illumination, 3-D displays, data point manipulations, cross-sectional profiles, and other display techniques help students better grasp the content and geospatial context of data. Layering capabilities allow easy data set comparisons. The core functionality also applies to imported data sets: Student-collected data can thus be imported and analysed using the same techniques. A new Save Session function allows educators to preserve a pre-loaded state of GeoMapApp. When shared with a class, the saved file allows every student to open GeoMapApp at exactly the same starting point from which to begin their data explorations. Examples of built-in data sets include seafloor crustal age, earthquake locations and focal mechanisms, analytical geochemistry, ocean water physical properties, US and international geological maps, and satellite imagery. Student-generated data sets can be imported in Excel, ASCII, shapefile, and gridded format. Base maps can be saved for posters and publications. A wide range of undergraduate enquiry-driven education modules for GeoMapApp is already available at SERC.

Argonne Physics Division - ATLAS

Science.gov Websites

Strategic Plan (2014) ATLAS Gus Savard Guy Savard, Director of ATLAS Welcome to ATLAS, the Argonne Tandem users. ATLAS mission statement and strategic plan guide the operation of the facility. The strategic plan defines the facilities main goals and is aligned with the US Nuclear Physics long-range plan

Fractal mechanisms and heart rate dynamics. Long-range correlations and their breakdown with disease

NASA Technical Reports Server (NTRS)

Peng, C. K.; Havlin, S.; Hausdorff, J. M.; Mietus, J. E.; Stanley, H. E.; Goldberger, A. L.

1995-01-01

Under healthy conditions, the normal cardiac (sinus) interbeat interval fluctuates in a complex manner. Quantitative analysis using techniques adapted from statistical physics reveals the presence of long-range power-law correlations extending over thousands of heartbeats. This scale-invariant (fractal) behavior suggests that the regulatory system generating these fluctuations is operating far from equilibrium. In contrast, it is found that for subjects at high risk of sudden death (e.g., congestive heart failure patients), these long-range correlations break down. Application of fractal scaling analysis and related techniques provides new approaches to assessing cardiac risk and forecasting sudden cardiac death, as well as motivating development of novel physiologic models of systems that appear to be heterodynamic rather than homeostatic.

Refusing to Twist: Demonstration of a Line Hexatic Phase in DNA Liquid Crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strey, H. H.; NICHD/LPSB, National Institutes of Health, Building 12A/2041, Bethesda, Maryland 20892-5626; Wang, J.

2000-04-03

We report conclusive high resolution small angle x-ray scattering evidence that long DNA fragments form an untwisted line hexatic phase between the cholesteric and the crystalline phases. The line hexatic phase is a liquid-crystalline phase with long-range hexagonal bond-orientational order, long-range nematic order, but liquidlike, i.e., short-range, positional order. So far, it has not been seen in any other three dimensional system. By line-shape analysis of x-ray scattering data we found that positional order decreases when the line hexatic phase is compressed. We suggest that such anomalous behavior is a result of the chiral nature of DNA molecules. (c) 2000more » The American Physical Society.« less

Wind-Driven Wireless Networked System of Mobile Sensors for Mars Exploration

NASA Technical Reports Server (NTRS)

Davoodi, Faranak; Murphy, Neil

2013-01-01

A revolutionary way is proposed of studying the surface of Mars using a wind-driven network of mobile sensors: GOWON. GOWON would be a scalable, self-powered and autonomous distributed system that could allow in situ mapping of a wide range of environmental phenomena in a much larger portion of the surface of Mars compared to earlier missions. It could improve the possibility of finding rare phenomena such as "blueberries' or bio-signatures and mapping their occurrence, through random wind-driven search. It would explore difficult terrains that were beyond the reach of previous missions, such as regions with very steep slopes and cluttered surfaces. GOWON has a potentially long life span, as individual elements can be added to the array periodically. It could potentially provide a cost-effective solution for mapping wide areas of Martian terrain, enabling leaving a long-lasting sensing and searching infrastructure on the surface of Mars. The system proposed here addresses this opportunity using technology advances in a distributed system of wind-driven sensors, referred to as Moballs.

SU-F-R-36: Validating Quantitative Radiomic Texture Features for Oncologic PET: A Digital Phantom Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, F; Yang, Y; Young, L

Purpose: Radiomic texture features derived from the oncologic PET have recently been brought under intense investigation within the context of patient stratification and treatment outcome prediction in a variety of cancer types; however, their validity has not yet been examined. This work is aimed to validate radiomic PET texture metrics through the use of realistic simulations in the ground truth setting. Methods: Simulation of FDG-PET was conducted by applying the Zubal phantom as an attenuation map to the SimSET software package that employs Monte Carlo techniques to model the physical process of emission imaging. A total of 15 irregularly-shaped lesionsmore » featuring heterogeneous activity distribution were simulated. For each simulated lesion, 28 texture features in relation to the intensity histograms (GLIH), grey-level co-occurrence matrices (GLCOM), neighborhood difference matrices (GLNDM), and zone size matrices (GLZSM) were evaluated and compared with their respective values extracted from the ground truth activity map. Results: In reference to the values from the ground truth images, texture parameters appearing on the simulated data varied with a range of 0.73–3026.2% for GLIH-based, 0.02–100.1% for GLCOM-based, 1.11–173.8% for GLNDM-based, and 0.35–66.3% for GLZSM-based. For majority of the examined texture metrics (16/28), their values on the simulated data differed significantly from those from the ground truth images (P-value ranges from <0.0001 to 0.04). Features not exhibiting significant difference comprised of GLIH-based standard deviation, GLCO-based energy and entropy, GLND-based coarseness and contrast, and GLZS-based low gray-level zone emphasis, high gray-level zone emphasis, short zone low gray-level emphasis, long zone low gray-level emphasis, long zone high gray-level emphasis, and zone size nonuniformity. Conclusion: The extent to which PET imaging disturbs texture appearance is feature-dependent and could be substantial. It is thus advised that use of PET texture parameters for predictive and prognostic measurements in oncologic setting awaits further systematic and critical evaluation.« less

Homonuclear long-range correlation spectra from HMBC experiments by covariance processing.

PubMed

Schoefberger, Wolfgang; Smrecki, Vilko; Vikić-Topić, Drazen; Müller, Norbert

2007-07-01

We present a new application of covariance nuclear magnetic resonance processing based on 1H--13C-HMBC experiments which provides an effective way for establishing indirect 1H--1H and 13C--13C nuclear spin connectivity at natural isotope abundance. The method, which identifies correlated spin networks in terms of covariance between one-dimensional traces from a single decoupled HMBC experiment, derives 13C--13C as well as 1H--1H spin connectivity maps from the two-dimensional frequency domain heteronuclear long-range correlation data matrix. The potential and limitations of this novel covariance NMR application are demonstrated on two compounds: eugenyl-beta-D-glucopyranoside and an emodin-derivative. Copyright (c) 2007 John Wiley & Sons, Ltd.

Developing and Validating an Abbreviated Version of the Microscale Audit for Pedestrian Streetscapes (MAPS-Abbreviated).

PubMed

Cain, Kelli L; Gavand, Kavita A; Conway, Terry L; Geremia, Carrie M; Millstein, Rachel A; Frank, Lawrence D; Saelens, Brian E; Adams, Marc A; Glanz, Karen; King, Abby C; Sallis, James F

2017-06-01

Macroscale built environment factors (e.g., street connectivity) are correlated with physical activity. Less-studied but more modifiable microscale elements (e.g., sidewalks) may also influence physical activity, but shorter audit measures of microscale elements are needed to promote wider use. This study evaluated the relation of an abbreviated 54-item streetscape audit tool with multiple measures of physical activity in four age groups. We developed a 54-item version from the original 120-item Microscale Audit of Pedestrian Streetscapes (MAPS). Audits were conducted on 0.25-0.45 mile routes from participant residences toward the nearest nonresidential destination for children (N=758), adolescents (N=897), younger adults (N=1,655), and older adults (N=367). Active transport and leisure physical activity were measured with surveys, and objective physical activity was measured with accelerometers. Items to retain from original MAPS were selected primarily by correlations with physical activity. Mixed linear regression analyses were conducted for MAPS-Abbreviated summary scores, adjusting for demographics, participant clustering, and macroscale walkability. MAPS-Abbreviated and original MAPS total scores correlated r=.94 The MAPS-Abbreviated tool was related similarly to physical activity outcomes as the original MAPS. Destinations and land use, streetscape and walking path characteristics, and overall total scores were significantly related to active transport in all age groups. Street crossing characteristics were related to active transport in children and older adults. Aesthetics and social characteristics were related to leisure physical activity in children and younger adults, and cul-de-sacs were related with physical activity in youth. Total scores were related to accelerometer-measured physical activity in children and older adults. MAPS-Abbreviated is a validated observational measure for use in research. The length and related cost of implementation has been cited as a barrier to use of microscale instruments, so availability of this shorter validated measure could lead to more widespread use of streetscape audits in health research.

Developing and Validating an Abbreviated Version of the Microscale Audit for Pedestrian Streetscapes (MAPS-Abbreviated)

PubMed Central

Cain, Kelli L.; Gavand, Kavita A.; Conway, Terry L.; Geremia, Carrie M.; Millstein, Rachel A.; Frank, Lawrence D.; Saelens, Brian E.; Adams, Marc A.; Glanz, Karen; King, Abby C.; Sallis, James F.

2017-01-01

Purpose Macroscale built environment factors (e.g., street connectivity) are correlated with physical activity. Less-studied but more modifiable microscale elements (e.g., sidewalks) may also influence physical activity, but shorter audit measures of microscale elements are needed to promote wider use. This study evaluated the relation of an abbreviated 54-item streetscape audit tool with multiple measures of physical activity in four age groups. Methods We developed a 54-item version from the original 120-item Microscale Audit of Pedestrian Streetscapes (MAPS). Audits were conducted on 0.25-0.45 mile routes from participant residences toward the nearest nonresidential destination for children (N=758), adolescents (N=897), younger adults (N=1,655), and older adults (N=367). Active transport and leisure physical activity were measured with surveys, and objective physical activity was measured with accelerometers. Items to retain from original MAPS were selected primarily by correlations with physical activity. Mixed linear regression analyses were conducted for MAPS-Abbreviated summary scores, adjusting for demographics, participant clustering, and macroscale walkability. Results MAPS-Abbreviated and original MAPS total scores correlated r=.94 The MAPS-Abbreviated tool was related similarly to physical activity outcomes as the original MAPS. Destinations and land use, streetscape and walking path characteristics, and overall total scores were significantly related to active transport in all age groups. Street crossing characteristics were related to active transport in children and older adults. Aesthetics and social characteristics were related to leisure physical activity in children and younger adults, and cul-de-sacs were related with physical activity in youth. Total scores were related to accelerometer-measured physical activity in children and older adults. Conclusion MAPS-Abbreviated is a validated observational measure for use in research. The length and related cost of implementation has been cited as a barrier to use of microscale instruments, so availability of this shorter validated measure could lead to more widespread use of streetscape audits in health research. PMID:29270361

Physical Webbing: Collaborative Kinesthetic Three-Dimensional Mind Maps[R

ERIC Educational Resources Information Center

Williams, Marian H.

2012-01-01

Mind Mapping has predominantly been used by individuals or collaboratively in groups as a paper-based or computer-generated learning strategy. In an effort to make Mind Mapping kinesthetic, collaborative, and three-dimensional, an innovative pedagogical strategy, termed Physical Webbing, was devised. In the Physical Web activity, groups…

Solitonic Josephson-based meminductive systems

NASA Astrophysics Data System (ADS)

Guarcello, Claudio; Solinas, Paolo; di Ventra, Massimiliano; Giazotto, Francesco

2017-04-01

Memristors, memcapacitors, and meminductors represent an innovative generation of circuit elements whose properties depend on the state and history of the system. The hysteretic behavior of one of their constituent variables, is their distinctive fingerprint. This feature endows them with the ability to store and process information on the same physical location, a property that is expected to benefit many applications ranging from unconventional computing to adaptive electronics to robotics. Therefore, it is important to find appropriate memory elements that combine a wide range of memory states, long memory retention times, and protection against unavoidable noise. Although several physical systems belong to the general class of memelements, few of them combine these important physical features in a single component. Here, we demonstrate theoretically a superconducting memory based on solitonic long Josephson junctions. Moreover, since solitons are at the core of its operation, this system provides an intrinsic topological protection against external perturbations. We show that the Josephson critical current behaves hysteretically as an external magnetic field is properly swept. Accordingly, long Josephson junctions can be used as multi-state memories, with a controllable number of available states, and in other emerging areas such as memcomputing, i.e., computing directly in/by the memory.

Non-local propagation of correlations in long-range interacting quantum systems

NASA Astrophysics Data System (ADS)

Lee, A. C.; Richerme, P.; Gong, Z.-X.; Senko, C.; Smith, J.; Foss-Feig, M.; Michalakis, S.; Gorshkov, A. V.; Monroe, C.

2014-05-01

The maximum speed with which information can propagate in a many body quantum system can dictate how demanding the system is to describe numerically and also how quickly disparate sites can become correlated. While these kinds of phenomena may be difficult or even impossible for classical computers to describe, trapped ions provide an excellent platform for investigating this rich quantum many-body physics. Using single-site resolved state-dependent imaging, we experimentally determine the spatial and time-dependent correlations of a far-from-equilibrium quantum many-body system evolving under a long-range Ising- or XY-model Hamiltonian. For varying interaction ranges, we extract the shape of the ``light'' cone and measure the velocity with which correlations propagate through the system. In many cases, we find increasing propagation velocities, which violate the prediction for short-range interactions and, in one instance, cannot be explained by any existing theory. Our results show that even for modest system sizes, trapped ion quantum simulators are well poised to study complex many-body physics which are intractable to classical methods. This work is supported by grants from the U.S. Army Research Office with funding from the DARPA OLE program, IARPA, and the MURI program; and the NSF Physics Frontier Center at JQI.

Optogenetic mapping of brain circuitry

NASA Astrophysics Data System (ADS)

Augustine, George J.; Berglund, Ken; Gill, Harin; Hoffmann, Carolin; Katarya, Malvika; Kim, Jinsook; Kudolo, John; Lee, Li M.; Lee, Molly; Lo, Daniel; Nakajima, Ryuichi; Park, Min Yoon; Tan, Gregory; Tang, Yanxia; Teo, Peggy; Tsuda, Sachiko; Wen, Lei; Yoon, Su-In

2012-10-01

Studies of the brain promise to be revolutionized by new experimental strategies that harness the combined power of optical techniques and genetics. We have mapped the circuitry of the mouse brain by using both optogenetic actuators that control neuronal activity and optogenetic sensors that detect neuronal activity. Using the light-activated cation channel, channelrhodopsin-2, to locally photostimulate neurons allows high-speed mapping of local and long-range circuitry. For example, with this approach we have mapped local circuits in the cerebral cortex, cerebellum and many other brain regions. Using the fluorescent sensor for chloride ions, Clomeleon, allows imaging of the spatial and temporal dimensions of inhibitory circuits in the brain. This approach allows imaging of both conventional "phasic" synaptic inhibition as well as unconventional "tonic" inhibition. The combined use of light to both control and monitor neural activity creates unprecedented opportunities to explore brain function, screen pharmaceutical agents, and potentially to use light to ameliorate psychiatric and neurological disorders.

Comparative physical mapping between wheat chromosome arm 2BL and rice chromosome 4.

PubMed

Lee, Tong Geon; Lee, Yong Jin; Kim, Dae Yeon; Seo, Yong Weon

2010-12-01

Physical maps of chromosomes provide a framework for organizing and integrating diverse genetic information. DNA microarrays are a valuable technique for physical mapping and can also be used to facilitate the discovery of single feature polymorphisms (SFPs). Wheat chromosome arm 2BL was physically mapped using a Wheat Genome Array onto near-isogenic lines (NILs) with the aid of wheat-rice synteny and mapped wheat EST information. Using high variance probe set (HVP) analysis, 314 HVPs constituting genes present on 2BL were identified. The 314 HVPs were grouped into 3 categories: HVPs that match only rice chromosome 4 (298 HVPs), those that match only wheat ESTs mapped on 2BL (1), and those that match both rice chromosome 4 and wheat ESTs mapped on 2BL (15). All HVPs were converted into gene sets, which represented either unique rice gene models or mapped wheat ESTs that matched identified HVPs. Comparative physical maps were constructed for 16 wheat gene sets and 271 rice gene sets. Of the 271 rice gene sets, 257 were mapped to the 18-35 Mb regions on rice chromosome 4. Based on HVP analysis and sequence similarity between the gene models in the rice chromosomes and mapped wheat ESTs, the outermost rice gene model that limits the translocation breakpoint to orthologous regions was identified.

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

PubMed Central

2013-01-01

Background As for other major crops, achieving a complete wheat genome sequence is essential for the application of genomics to breeding new and improved varieties. To overcome the complexities of the large, highly repetitive and hexaploid wheat genome, the International Wheat Genome Sequencing Consortium established a chromosome-based strategy that was validated by the construction of the physical map of chromosome 3B. Here, we present improved strategies for the construction of highly integrated and ordered wheat physical maps, using chromosome 1BL as a template, and illustrate their potential for evolutionary studies and map-based cloning. Results Using a combination of novel high throughput marker assays and an assembly program, we developed a high quality physical map representing 93% of wheat chromosome 1BL, anchored and ordered with 5,489 markers including 1,161 genes. Analysis of the gene space organization and evolution revealed that gene distribution and conservation along the chromosome results from the superimposition of the ancestral grass and recent wheat evolutionary patterns, leading to a peak of synteny in the central part of the chromosome arm and an increased density of non-collinear genes towards the telomere. With a density of about 11 markers per Mb, the 1BL physical map provides 916 markers, including 193 genes, for fine mapping the 40 QTLs mapped on this chromosome. Conclusions Here, we demonstrate that high marker density physical maps can be developed in complex genomes such as wheat to accelerate map-based cloning, gain new insights into genome evolution, and provide a foundation for reference sequencing. PMID:23800011

A 'Moving' Jupiter Global Map (Animation)

NASA Technical Reports Server (NTRS)

2007-01-01

The Long Range Reconnaissance Imager (LORRI) on New Horizons has acquired six global maps of Jupiter as the spacecraft approaches the giant planet for a close encounter at the end of February. The high-resolution camera acquired each of six observation 'sets' as a series of individual pictures taken one hour apart, covering a full 10-hour rotation of Jupiter. The LORRI team at the Johns Hopkins University Applied Physics Laboratory (APL) reduced the sets to form six individual maps in a simple rectangular projection. These six maps were then combined to make the movie.

The table below shows the dates and the ranges from Jupiter at which these six sets of observations were acquired. Even for the latest set of images taken January 21-22, from 60.5 million kilometers (37.6 million miles), New Horizons was still farther from Jupiter than the average distance of Mercury from the Sun. At that distance from Jupiter, a single LORRI picture resolution element amounts to 300 kilometers (186 miles) on Jupiter.

Many features seen in Jupiter's atmosphere are giant storm clouds. The Little Red Spot, which LORRI will image close-up on February 27, is the target-like feature located near 30 degrees South and 230 degrees West; this storm is larger than the Earth. The even larger Great Red Spot is seen near 20 degrees South and 320 degrees West. The counterclockwise rotation of the clouds within the Great Red Spot can be seen. The westward drift of the Great Red Spot is easily seen in the movie, as is the slower drift, in the opposite direction, of the Little Red Spot. The storms of Jupiter are not fixed in location relative to each other or relative to any solid surface below, because Jupiter is a fluid planet without a solid surface.

Also, dramatic changes are seen in the series of bright plume-like clouds encircling the planet between 0 and 10 degrees North. Scientists believe these result from an enormous atmospheric wave with rising air, rich in ammonia that condenses to form the plume tails, and with falling air in the dark areas just to the east of each plume.

The maps of Jupiter shown here do not include the polar regions, because those regions are not well seen by LORRI from its vantage point high above Jupiter's equatorial region. Shadows of Jupiter's moons (first of Io, then of Ganymede) appear in two of the maps. Name Dates Range from Jupiter [million km]

Image resolution element [km] JobsATM1 Jan 8-9, 2007 81.2 402 JobsATM2 Jan 9-10, 2007 79.9 396 JobsATM3 Jan 14-15, 2007 71.9 356 JobsATM4 Jan 15, 2007 70.5 349 JobsATM5 Jan 20-21, 2007 61.8 306 JobsATM6 Jan 21-22, 2007 60.5 300

Hydrologic framework of Long Island, New York

USGS Publications Warehouse

Smolensky, Douglas A.; Buxton, Herbert T.; Shernoff, Peter K.

1990-01-01

Long Island, N.Y., is underlain by a mass of unconsolidated geologic deposits of clay, silt, sand, and gravel that overlie southward-sloping consolidated bedrock. These deposits are thinnest in northern Queens County (northwestern Long Island), where bedrock crops out, and increase to a maximum thickness of 2,000 ft in southeastern Long Island. This sequence of unconsolidated deposits consists of several distinct geologic units ranging in age from late Cretaceous through Pleistocene, with some recent deposits near shores and streams. These units are differentiated by age, depositional environment, and lithology in table 1. Investigations of ground-water availability and flow patterns may require information on the internal geometry of the hydrologic system that geologic correlations and interpretation alone cannot provide; hydrologic interpretations in which deposits are differentiated on the basis of water-transmitting properties are generally needed also. This set of maps and vertical sections depicts the hydrogeologic framework of the unconsolidated deposits that form Long Island's ground-water system. These deposits can be classified into eight major hydrogeologic units (table 1). The hydrogeologic interpretations presented herein are not everywhere consistent with strict geologic interpretation owing to facies changes and local variations in the water-transmitting properties within geologic units. These maps depict the upper-surface altitude of seven of the eight hydrogeologic units, which, in ascending order, are: consolidated bedrock, Lloyd aquifer, Raritan confining unit, Magothy aquifer, Monmouth greensand, Jameco aquifer, and Gardiners Clay. The upper glacial aquifer—the uppermost unit—is at land surface over most of Long Island and is, therefore, not included. The nine north-south hydrogeologic sections shown below depict the entire sequence of unconsolidated deposits and, together with the maps, provide a detailed three-dimensional interpretation of Long Island's hydrogeologic framework. The structure-contour map that shows the upper-surface altitude of the Cretaceous deposits is included to illustrate the erosional unconformity between the Cretaceous and overlying Pleistocene deposits. Pleistocene erosion played a major role in determining the shape and extent of the Lloyd aquifer, the Raritan confining unit, and the Magothy aquifer, and thus partly determined their hydrogeologic relation with subsequent (post-Cretaceous) deposits.

Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting.

PubMed

Achenbach, Ute C; Tang, Xiaomin; Ballvora, Agim; de Jong, Hans; Gebhardt, Christiane

2010-02-01

Potato chromosome 5 harbours numerous genes for important qualitative and quantitative traits, such as resistance to the root cyst nematode Globodera pallida and the late blight fungus, Phytophthora infestans. The genes make up part of a "hot spot" for resistances to various pathogens covering a genetic map length of 3 cM between markers GP21 and GP179. We established the physical size and position of this region on chromosome 5 in potato and tomato using fluorescence in situ hybridization (FISH) on pachytene chromosomes. Five potato bacterial artificial chromosome (BAC) clones with the genetically anchored markers GP21, R1-contig (proximal end), CosA, GP179, and StPto were selected, labeled with different fluorophores, and hybridized in a five-colour FISH experiment. Our results showed the location of the BAC clones in the middle of the long arm of chromosome 5 in both potato and tomato. Based on chromosome measurements, we estimate the physical size of the GP21-GP179 interval at 0.85 Mb and 1.2 Mb in potato and tomato, respectively. The GP21-GP179 interval is part of a genome segment known to have inverted map positions between potato and tomato.

Use of microwave satellite data to study variations in rainfall over the Indian Ocean

NASA Technical Reports Server (NTRS)

Hinton, Barry B.; Martin, David W.; Auvine, Brian; Olson, William S.

1990-01-01

The University of Wisconsin Space Science and Engineering Center mapped rainfall over the Indian Ocean using a newly developed Scanning Multichannel Microwave Radiometer (SMMR) rain-retrieval algorithm. The short-range objective was to characterize the distribution and variability of Indian Ocean rainfall on seasonal and annual scales. In the long-range, the objective is to clarify differences between land and marine regimes of monsoon rain. Researchers developed a semi-empirical algorithm for retrieving Indian Ocean rainfall. Tools for this development have come from radiative transfer and cloud liquid water models. Where possible, ground truth information from available radars was used in development and testing. SMMR rainfalls were also compared with Indian Ocean gauge rainfalls. Final Indian Ocean maps were produced for months, seasons, and years and interpreted in terms of historical analysis over the sub-continent.

24 CFR 248.201 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-04-01

... cash or assets for subsequent withdrawal, and excluding repayment of advances made for reasonable and... long-range planning by the board of directors to ensure the physical, financial and social viability of...

Acute Sleep Deprivation Induces a Local Brain Transfer Information Increase in the Frontal Cortex in a Widespread Decrease Context.

PubMed

Alonso, Joan F; Romero, Sergio; Mañanas, Miguel A; Alcalá, Marta; Antonijoan, Rosa M; Giménez, Sandra

2016-04-14

Sleep deprivation (SD) has adverse effects on mental and physical health, affecting the cognitive abilities and emotional states. Specifically, cognitive functions and alertness are known to decrease after SD. The aim of this work was to identify the directional information transfer after SD on scalp EEG signals using transfer entropy (TE). Using a robust methodology based on EEG recordings of 18 volunteers deprived from sleep for 36 h, TE and spectral analysis were performed to characterize EEG data acquired every 2 h. Correlation between connectivity measures and subjective somnolence was assessed. In general, TE showed medium- and long-range significant decreases originated at the occipital areas and directed towards different regions, which could be interpreted as the transfer of predictive information from parieto-occipital activity to the rest of the head. Simultaneously, short-range increases were obtained for the frontal areas, following a consistent and robust time course with significant maps after 20 h of sleep deprivation. Changes during sleep deprivation in brain network were measured effectively by TE, which showed increased local connectivity and diminished global integration. TE is an objective measure that could be used as a potential measure of sleep pressure and somnolence with the additional property of directed relationships.

Long-Term Evolution of the Electrical Stimulation Levels for Cochlear Implant Patients

PubMed Central

Vargas, Jose Luis; Sainz, Manuel; Roldan, Cristina; de la Torre, Angel

2012-01-01

Objectives The stimulation levels programmed in cochlear implant systems are affected by an evolution since the first switch-on of the processor. This study was designed to evaluate the changes in stimulation levels over time and the relationship between post-implantation physiological changes and with the hearing experience provided by the continuous use of the cochlear implant. Methods Sixty-two patients, ranging in age from 4 to 68 years at the moment of implantation participated in this study. All subjects were implanted with the 12 channels COMBI 40+ cochlear implant at San Cecilio University Hospital, Granada, Spain. Hearing loss etiology and progression characteristics varied across subjects. Results The analyzed programming maps show that the stimulation levels suffer a fast evolution during the first weeks after the first switch-on of the processor. Then, the evolution becomes slower and the programming parameters tend to be stable at about 6 months after the first switch-on. The evolution of the stimulation levels implies an increment of the electrical dynamic range, which is increased from 15.4 to 20.7 dB and improves the intensity resolution. A significant increment of the sensitivity to acoustic stimuli is also observed. For some patients, we have also observed transitory changes in the electrode impedances associated to secretory otitis media, which cause important changes in the programming maps. Conclusion We have studied the long-term evolution of the stimulation levels in cochlear implant patients. Our results show the importance of systematic measurements of the electrode impedances before the revision of the programming map. This report also highlights that the evolution of the programming maps is an important factor to be considered in order to determine an adequate calendar fitting of the cochlear implant processor. PMID:23205223

Computational tools and lattice design for the PEP-II B-Factory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cai, Y.; Irwin, J.; Nosochkov, Y.

1997-02-01

Several accelerator codes were used to design the PEP-II lattices, ranging from matrix-based codes, such as MAD and DIMAD, to symplectic-integrator codes, such as TRACY and DESPOT. In addition to element-by-element tracking, we constructed maps to determine aberration strengths. Furthermore, we have developed a fast and reliable method (nPB tracking) to track particles with a one-turn map. This new technique allows us to evaluate performance of the lattices on the entire tune-plane. Recently, we designed and implemented an object-oriented code in C++ called LEGO which integrates and expands upon TRACY and DESPOT. {copyright} {ital 1997 American Institute of Physics.}

IMPETUS - Interactive MultiPhysics Environment for Unified Simulations.

PubMed

Ha, Vi Q; Lykotrafitis, George

2016-12-08

We introduce IMPETUS - Interactive MultiPhysics Environment for Unified Simulations, an object oriented, easy-to-use, high performance, C++ program for three-dimensional simulations of complex physical systems that can benefit a large variety of research areas, especially in cell mechanics. The program implements cross-communication between locally interacting particles and continuum models residing in the same physical space while a network facilitates long-range particle interactions. Message Passing Interface is used for inter-processor communication for all simulations. Copyright © 2016 Elsevier Ltd. All rights reserved.

Characterization of a Thermo-Inducible Chlorophyll-Deficient Mutant in Barley.

PubMed

Wang, Rong; Yang, Fei; Zhang, Xiao-Qi; Wu, Dianxin; Tan, Cong; Westcott, Sharon; Broughton, Sue; Li, Chengdao; Zhang, Wenying; Xu, Yanhao

2017-01-01

Leaf color is an important trait for not only controlling crop yield but also monitoring plant status under temperature stress. In this study, a thermo-inducible chlorophyll-deficient mutant, named V-V-Y, was identified from a gamma-radiated population of the barley variety Vlamingh. The leaves of the mutant were green under normal growing temperature but turned yellowish under high temperature in the glasshouse experiment. The ratio of chlorophyll a and chlorophyll b in the mutant declined much faster in the first 7-9 days under heat treatment. The leaves of V-V-Y turned yellowish but took longer to senesce under heat stress in the field experiment. Genetic analysis indicated that a single nuclear gene controlled the mutant trait. The mutant gene ( vvy ) was mapped to the long arm of chromosome 4H between SNP markers 1_0269 and 1_1531 with a genetic distance of 2.2 cM and a physical interval of 9.85 Mb. A QTL for grain yield was mapped to the same interval and explained 10.4% of the yield variation with a LOD score of 4. This QTL is coincident with the vvy gene interval that is responsible for the thermo-inducible chlorophyll-deficient trait. Fine mapping, based on the barley reference genome sequence, further narrowed the vvy gene to a physical interval of 0.428 Mb with 11 annotated genes. This is the first report of fine mapping a thermo-inducible chlorophyll-deficient gene in barley.

Predicting protein contact map using evolutionary and physical constraints by integer programming.

PubMed

Wang, Zhiyong; Xu, Jinbo

2013-07-01

Protein contact map describes the pairwise spatial and functional relationship of residues in a protein and contains key information for protein 3D structure prediction. Although studied extensively, it remains challenging to predict contact map using only sequence information. Most existing methods predict the contact map matrix element-by-element, ignoring correlation among contacts and physical feasibility of the whole-contact map. A couple of recent methods predict contact map by using mutual information, taking into consideration contact correlation and enforcing a sparsity restraint, but these methods demand for a very large number of sequence homologs for the protein under consideration and the resultant contact map may be still physically infeasible. This article presents a novel method PhyCMAP for contact map prediction, integrating both evolutionary and physical restraints by machine learning and integer linear programming. The evolutionary restraints are much more informative than mutual information, and the physical restraints specify more concrete relationship among contacts than the sparsity restraint. As such, our method greatly reduces the solution space of the contact map matrix and, thus, significantly improves prediction accuracy. Experimental results confirm that PhyCMAP outperforms currently popular methods no matter how many sequence homologs are available for the protein under consideration. http://raptorx.uchicago.edu.

Ordering process in the diffusively coupled logistic lattice

NASA Astrophysics Data System (ADS)

Conrado, Claudine V.; Bohr, Tomas

1991-08-01

We study the ordering process in a lattice of diffusively coupled logistic maps for increasing lattice size. Within a window of parameters, the system goes into a weakly chaotic state with long range "antiferromagnetic" order. This happens for arbitrary lattice size L and the ordering time behaves as t ~ L2 as we would expect from a picture of diffusing defects.

From Planetary Mapping to Map Production: Planetary Cartography as integral discipline in Planetary Sciences

NASA Astrophysics Data System (ADS)

Nass, Andrea; van Gasselt, Stephan; Hargitai, Hendrik; Hare, Trent; Manaud, Nicolas; Karachevtseva, Irina; Kersten, Elke; Roatsch, Thomas; Wählisch, Marita; Kereszturi, Akos

2016-04-01

Cartography is one of the most important communication channels between users of spatial information and laymen as well as the open public alike. This applies to all known real-world objects located either here on Earth or on any other object in our Solar System. In planetary sciences, however, the main use of cartography resides in a concept called planetary mapping with all its various attached meanings: it can be (1) systematic spacecraft observation from orbit, i.e. the retrieval of physical information, (2) the interpretation of discrete planetary surface units and their abstraction, or it can be (3) planetary cartography sensu strictu, i.e., the technical and artistic creation of map products. As the concept of planetary mapping covers a wide range of different information and knowledge levels, aims associated with the concept of mapping consequently range from a technical and engineering focus to a scientific distillation process. Among others, scientific centers focusing on planetary cartography are the United State Geological Survey (USGS, Flagstaff), the Moscow State University of Geodesy and Cartography (MIIGAiK, Moscow), Eötvös Loránd University (ELTE, Hungary), and the German Aerospace Center (DLR, Berlin). The International Astronomical Union (IAU), the Commission Planetary Cartography within International Cartographic Association (ICA), the Open Geospatial Consortium (OGC), the WG IV/8 Planetary Mapping and Spatial Databases within International Society for Photogrammetry and Remote Sensing (ISPRS) and a range of other institutions contribute on definition frameworks in planetary cartography. Classical cartography is nowadays often (mis-)understood as a tool mainly rather than a scientific discipline and an art of communication. Consequently, concepts of information systems, mapping tools and cartographic frameworks are used interchangeably, and cartographic workflows and visualization of spatial information in thematic maps have often been neglected or were left to software systems to decide by some arbitrary default values. The diversity of cartography as a research discipline and its different contributions in geospatial sciences and communication of information and knowledge will be highlighted in this contribution. We invite colleagues from this and other discipline to discuss concepts and topics for joint future collaboration and research.

Geologic Map of Lassen Volcanic National Park and Vicinity, California

USGS Publications Warehouse

Clynne, Michael A.; Muffler, L.J. Patrick

2010-01-01

The geologic map of Lassen Volcanic National Park (LVNP) and vicinity encompasses 1,905 km2 at the south end of the Cascade Range in Shasta, Lassen, Tehama, and Plumas Counties, northeastern California (fig. 1, sheet 3). The park includes 430 km2 of scenic volcanic features, glacially sculpted terrain, and the most spectacular array of thermal features in the Cascade Range. Interest in preserving the scenic wonders of the Lassen area as a national park arose in the early 1900s to protect it from commercial development and led to the establishment in 1907 of two small national monuments centered on Lassen Peak and Cinder Cone. The eruptions of Lassen Peak in 1914-15 were the first in the Cascade Range since widespread settling of the West in the late 1800s. Through the printed media, the eruptions aroused considerable public interest and inspired renewed efforts, which had languished since 1907, to establish a national park. In 1916, Lassen Volcanic National Park was established by combining the areas of the previously established national monuments and adjacent lands. The southernmost Cascade Range is bounded on the west by the Sacramento Valley and the Klamath Mountains, on the south by the Sierra Nevada, and on the east by the Basin and Range geologic provinces. Most of the map area is underlain by middle to late Pleistocene volcanic rocks; Holocene, early Pleistocene, and late Pliocene volcanic rocks (<3.5 m.y.) are less common. Paleozoic and Mesozoic rocks are inferred to underlie the volcanic deposits (Jachens and Saltus, 1983), but the nearest exposures of pre-Tertiary rocks are 15 km to the south, 9 km to the southwest, and 12 km to the west. Diller (1895) recognized the young volcanic geology and produced the first geologic map of the Lassen area. The map (sheet 1) builds on and extends geologic mapping by Williams (1932), Macdonald (1963, 1964, 1965), and Wilson (1961). The Lassen Peak area mapped by Christiansen and others (2002) and published in greater detail (1:24,000) was modified for inclusion here. Figure 2 (sheet 3) shows the mapping credit for previous work; figure 3 (sheet 3) shows locations discussed throughout the text. A CD-ROM entitled Database for the Geologic Map of Lassen Volcanic National Park and Vicinity, California accompanies the printed map (Muffler and others, 2010). The CD-ROM contains ESRI compatible geographic information system data files used to create the 1:50,000-scale geologic map, both geologic and topographic data and their associated metadata files, and printable versions of the geologic map and pamphlet as PDF formatted files. The 1:50,000-scale geologic map was compiled from 1:24,000-scale geologic maps of individual quadrangles that are also included in the CD-ROM. It also contains ancillary data that support the map including locations of rock samples selected for chemical analysis (Clynne and others, 2008) and radiometric dating, photographs of geologic features, and links to related data or web sites. Data contained in the CD-ROM are also available on this Web site. The southernmost Cascade Range consists of a regional platform of basalt and basaltic andesite, with subordinate andesite and sparse dacite. Nested within these regional rocks are 'volcanic centers', defined as large, long-lived, composite, calc-alkaline edifices erupting the full range of compositions from basalt to rhyolite, but dominated by andesite and dacite. Volcanic centers are produced by the focusing of basaltic flux from the mantle and resultant enhanced interaction of mafic magma with the crust. Collectively, volcanic centers mark the axis of the southernmost Cascade Range. The map area includes the entire Lassen Volcanic Center, parts of three older volcanic centers (Maidu, Dittmar, and Latour), and the products of regional volcanism (fig. 4, sheet 3). Terminology used for subdivision of the Lassen Volcanic Center has been modified from Clynne (1984, 1990).

Polar continental margins: Studies off East Greenland

NASA Astrophysics Data System (ADS)

Mienert, J.; Thiede, J.; Kenyon, N. H.; Hollender, F.-J.

The passive continental margin off east Greenland has been shaped by tectonic and sedimentary processes, and typical physiographic patterns have evolved over the past few million years under the influence of the late Cenozoic Northern Hemisphere glaciations. The Greenland ice shield has been particularly affected.GLORIA (Geological Long Range Inclined Asdic), the Institute of Oceanographic Sciences' (IOS) long-range, side-scan sonar, was used on a 1992 RV Livonia cruise to map large-scale changes in sedimentary patterns along the east Greenland continental margin. The overall objective of this research program was to determine the variety of large-scale seafloor processes to improve our understanding of the interaction between ice sheets, current regimes, and sedimentary processes. In cooperation with IOS and the RV Livonia, a high-quality set of seafloor data has been produced. GLORIA'S first survey of east Greenland's continental margin covered several 1000- × 50-km-wide swaths (Figure 1) and yielded an impressive sidescan sonar image of the complete Greenland Basin and margin (about 250,000 km2). A mosaic of the data was made at a scale of 1:375,000. The base map was prepared with a polar stereographic projection having a standard parallel of 71°.

Contiguous 22.1-kb deletion embracing AVPR2 and ARHGAP4 genes at novel breakpoints leads to nephrogenic diabetes insipidus in a Chinese pedigree.

PubMed

Bai, Ying; Chen, Yibing; Kong, Xiangdong

2018-02-02

It has been reported that mutations in arginine vasopressin type 2 receptor (AVPR2) cause congenital X-linked nephrogenic diabetes insipidus (NDI). However, only a few cases of AVPR2 deletion have been documented in China. An NDI pedigree was included in this study, including the proband and his mother. All NDI patients had polyuria, polydipsia, and growth retardation. PCR mapping, long range PCR and sanger sequencing were used to identify genetic causes of NDI. A novel 22,110 bp deletion comprising AVPR2 and ARH4GAP4 genes was identified by PCR mapping, long range PCR and sanger sequencing. The deletion happened perhaps due to the 4-bp homologous sequence (TTTT) at the junctions of both 5' and 3' breakpoints. The gross deletion co-segregates with NDI. After analyzing available data of putative clinical signs of AVPR2 and ARH4GAP4 deletion, we reconsider the potential role of AVPR2 deletion in short stature. We identified a novel 22.1-kb deletion leading to X-linked NDI in a Chinese pedigree, which would increase the current knowledge in AVPR2 mutation.

Modeling adsorption properties of structurally deformed metal–organic frameworks using structure–property map

PubMed Central

Lim, Dae-Woon; Kim, Sungjune; Harale, Aadesh; Yoon, Minyoung; Suh, Myunghyun Paik; Kim, Jihan

2017-01-01

Structural deformation and collapse in metal-organic frameworks (MOFs) can lead to loss of long-range order, making it a challenge to model these amorphous materials using conventional computational methods. In this work, we show that a structure–property map consisting of simulated data for crystalline MOFs can be used to indirectly obtain adsorption properties of structurally deformed MOFs. The structure–property map (with dimensions such as Henry coefficient, heat of adsorption, and pore volume) was constructed using a large data set of over 12000 crystalline MOFs from molecular simulations. By mapping the experimental data points of deformed SNU-200, MOF-5, and Ni-MOF-74 onto this structure–property map, we show that the experimentally deformed MOFs share similar adsorption properties with their nearest neighbor crystalline structures. Once the nearest neighbor crystalline MOFs for a deformed MOF are selected from a structure–property map at a specific condition, then the adsorption properties of these MOFs can be successfully transformed onto the degraded MOFs, leading to a new way to obtain properties of materials whose structural information is lost. PMID:28696307

Characterizing regional soil mineral composition using spectroscopyand geostatistics

USGS Publications Warehouse

Mulder, V.L.; de Bruin, S.; Weyermann, J.; Kokaly, Raymond F.; Schaepman, M.E.

2013-01-01

This work aims at improving the mapping of major mineral variability at regional scale using scale-dependent spatial variability observed in remote sensing data. Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and statistical methods were combined with laboratory-based mineral characterization of field samples to create maps of the distributions of clay, mica and carbonate minerals and their abundances. The Material Identification and Characterization Algorithm (MICA) was used to identify the spectrally-dominant minerals in field samples; these results were combined with ASTER data using multinomial logistic regression to map mineral distributions. X-ray diffraction (XRD)was used to quantify mineral composition in field samples. XRD results were combined with ASTER data using multiple linear regression to map mineral abundances. We testedwhether smoothing of the ASTER data to match the scale of variability of the target sample would improve model correlations. Smoothing was donewith Fixed Rank Kriging (FRK) to represent the mediumand long-range spatial variability in the ASTER data. Stronger correlations resulted using the smoothed data compared to results obtained with the original data. Highest model accuracies came from using both medium and long-range scaled ASTER data as input to the statistical models. High correlation coefficients were obtained for the abundances of calcite and mica (R2 = 0.71 and 0.70, respectively). Moderately-high correlation coefficients were found for smectite and kaolinite (R2 = 0.57 and 0.45, respectively). Maps of mineral distributions, obtained by relating ASTER data to MICA analysis of field samples, were found to characterize major soil mineral variability (overall accuracies for mica, smectite and kaolinite were 76%, 89% and 86% respectively). The results of this study suggest that the distributions of minerals and their abundances derived using FRK-smoothed ASTER data more closely match the spatial variability of soil and environmental properties at regional scale.

Holographic thermalization with initial long range correlation

DOE PAGES

Lin, Shu

2016-01-19

Here, we studied the evolution of the Wightman correlator in a thermalizing state modeled by AdS 3-Vaidya background. A prescription was given for calculating the Wightman correlator in coordinate space without using any approximation. For equal-time correlator , we obtained an enhancement factor v 2 due to long range correlation present in the initial state. This was missed by previous studies based on geodesic approximation. Moreover, we found that the long range correlation in initial state does not lead to significant modification to thermalization time as compared to known results with generic initial state. We also studied the spatially integratedmore » Wightman correlator and showed evidence on the distinction between long distance and small momentum physics for an out-of-equilibrium state. We also calculated the radiation spectrum of particles weakly coupled to O and found that lower frequency mode approaches thermal spectrum faster than high frequency mode.« less

Fact versus formula in the power spectra of complex systems

NASA Astrophysics Data System (ADS)

Watkins, Nick

2016-04-01

More than 100 years ago, Thomson and Tait's classic "Treatise on Natural Philosophy" cautioned its readers against "considering the formula and not the fact as physical reality". Deciding what the facts actually _were, however, was left as an exercise for the reader ... Complex systems offer many examples [1] of the ambiguity Thomson and Tait were trying to point out. This presentation will be about a formula-the "1/f" spectral shape seen in many areas of physics including climate science; and an empirical fact-the growth of rescaled range originally seen in river time series and now known as the Hurst effect. It is well known that Mandelbrot kicked off the study of long range dependence (LRD) in the mid 1960s [2] with a stationary model for 1/f noise and the Hurst effect. This fractional Gaussian model is now so well known that it is often seen as synonymous with both 1/f noise and the Hurst effect. However Mandelbrot himself was aware that there were other models that produced 1/f noise, including a family [3-6] which he called "conditionally stationary", with power law distributions of times between switching of states. Late in his life he re-emphasised the clear contrasts between their behaviour and that of fGn. I will explain why these other models are also physically interesting, and will show why real systems including climate examples may potentially map more closely to one or the other, or may in fact combine both aspects. I will also discuss his proposals for distinguishing between the models and how they may be implemented. [1] Watkins, Bunched Black Swans, Geophys Res. Lett, 2013 [2] Graves et al, A Brief History of Long Memory, arXiv:1406.6018 [stat.OT] [3] Berger and Mandelbrot, "A New Model for Error Clustering in Telephone Circuits", IBM Technical Journal, July 1963. [4] Mandelbrot, "Self-similar error clusters in communications systems, and the concept of conditional stationarity", IEEE Trans. on Communications Technology, COM-13, 71-90, 1965. [5] Mandelbrot, "Time varying Channels, 1/f noises, and the Infrared Catastrophe: Or why does the low frequency energy sometimes seem infinite ?", IEEE Communication Convention, Boulder, Colorado, 1965. [6] Mandelbrot, "Some Noises With 1/f Spectrum, a Bridge Between Direct Current and White Noise", IEEE Trans. Inf. Theory, 13(2), 289, 1967.

Bedrock and surficial geologic map of the Satan Butte and Greasewood 7.5’ quadrangles, Navajo and Apache Counties, northern Arizona

USGS Publications Warehouse

Amoroso, Lee; Priest, Susan S.; Hiza-Redsteer, Margaret

2013-01-01

The geologic map of the Satan Butte and Greasewood 7.5’ quadrangles is the result of a cooperative effort of the U.S. Geological Survey (USGS) and the Navajo Nation to provide regional geologic information for management and planning officials. This map provides geologic information useful for range management, plant and animal studies, flood control, water resource investigations, and natural hazards associated with sand-dune mobility. The map provides connectivity to the regional geologic framework of the Grand Canyon area of northern Arizona. The map area encompasses approximately 314 km2 (123 mi2) within Navajo and Apache Counties of northern Arizona and is bounded by lat 35°37'30" to 35°30' N., long 109°45' to 110° W. The quadrangles lie within the southern Colorado Plateau geologic province and within the northeastern portion of the Hopi Buttes (Tsézhin Bií). Large ephemeral drainages, Pueblo Colorado Wash and Steamboat Wash, originate north of the map area on the Defiance Plateau and Balakai Mesa respectively. Elevations range from 1,930 m (6,330 ft) at the top of Satan Butte to about 1,787 m (5,860 ft) at Pueblo Colorado Wash where it exits the southwest corner of the Greasewood quadrangle. The only settlement within the map area is Greasewood, Arizona, on the north side of Pueblo Colorado Wash. Navajo Highway 15 crosses both quadrangles and joins State Highway 264 northwest of Ganado. Unimproved dirt roads provide access to remote parts of the Navajo Reservation.

The Seismicity of the Central Apennines Region Studied by Means of a Physics-Based Earthquake Simulator

NASA Astrophysics Data System (ADS)

Console, R.; Vannoli, P.; Carluccio, R.

2016-12-01

The application of a physics-based earthquake simulation algorithm to the central Apennines region, where the 24 August 2016 Amatrice earthquake occurred, allowed the compilation of a synthetic seismic catalog lasting 100 ky, and containing more than 500,000 M ≥ 4.0 events, without the limitations that real catalogs suffer in terms of completeness, homogeneity and time duration. The algorithm on which this simulator is based is constrained by several physical elements as: (a) an average slip rate for every single fault in the investigated fault systems, (b) the process of rupture growth and termination, leading to a self-organized earthquake magnitude distribution, and (c) interaction between earthquake sources, including small magnitude events. Events nucleated in one fault are allowed to expand into neighboring faults, even belonging to a different fault system, if they are separated by less than a given maximum distance. The seismogenic model upon which we applied the simulator code, was derived from the DISS 3.2.0 database (http://diss.rm.ingv.it/diss/), selecting all the fault systems that are recognized in the central Apennines region, for a total of 24 fault systems. The application of our simulation algorithm provides typical features in time, space and magnitude behavior of the seismicity, which are comparable with those of real observations. These features include long-term periodicity and clustering of strong earthquakes, and a realistic earthquake magnitude distribution departing from the linear Gutenberg-Richter distribution in the moderate and higher magnitude range. The statistical distribution of earthquakes with M ≥ 6.0 on single faults exhibits a fairly clear pseudo-periodic behavior, with a coefficient of variation Cv of the order of 0.3-0.6. We found in our synthetic catalog a clear trend of long-term acceleration of seismic activity preceding M ≥ 6.0 earthquakes and quiescence following those earthquakes. Lastly, as an example of a possible use of synthetic catalogs, an attenuation law was applied to all the events reported in the synthetic catalog for the production of maps showing the exceedence probability of given values of peak acceleration (PGA) on the territory under investigation. The application of a physics-based earthquake simulation algorithm to the central Apennines region, where the 24 August 2016 Amatrice earthquake occurred, allowed the compilation of a synthetic seismic catalog lasting 100 ky, and containing more than 500,000 M ≥ 4.0 events, without the limitations that real catalogs suffer in terms of completeness, homogeneity and time duration. The algorithm on which this simulator is based is constrained by several physical elements as: (a) an average slip rate for every single fault in the investigated fault systems, (b) the process of rupture growth and termination, leading to a self-organized earthquake magnitude distribution, and (c) interaction between earthquake sources, including small magnitude events. Events nucleated in one fault are allowed to expand into neighboring faults, even belonging to a different fault system, if they are separated by less than a given maximum distance. The seismogenic model upon which we applied the simulator code, was derived from the DISS 3.2.0 database (http://diss.rm.ingv.it/diss/), selecting all the fault systems that are recognized in the central Apennines region, for a total of 24 fault systems. The application of our simulation algorithm provides typical features in time, space and magnitude behavior of the seismicity, which are comparable with those of real observations. These features include long-term periodicity and clustering of strong earthquakes, and a realistic earthquake magnitude distribution departing from the linear Gutenberg-Richter distribution in the moderate and higher magnitude range. The statistical distribution of earthquakes with M ≥ 6.0 on single faults exhibits a fairly clear pseudo-periodic behavior, with a coefficient of variation Cv of the order of 0.3-0.6. We found in our synthetic catalog a clear trend of long-term acceleration of seismic activity preceding M ≥ 6.0 earthquakes and quiescence following those earthquakes. Lastly, as an example of a possible use of synthetic catalogs, an attenuation law was applied to all the events reported in the synthetic catalog for the production of maps showing the exceedence probability of given values of peak acceleration (PGA) on the territory under investigation.

Mapping the Distribution of Potential Land Drought in Batam Island Using the Integration of Remote Sensing and Geographic Information Systems (GIS)

NASA Astrophysics Data System (ADS)

Lubis, M. Z.; Taki, H. M.; Anurogo, W.; Pamungkas, D. S.; Wicaksono, P.; Aprilliyanti, T.

2017-12-01

Potential land drought mapping on Batam is needed to determine the distribution of areas that are very potential to the physical drought of the land. It is because the drought is always threatening on the long dry season. This research integrates remote sensing science with Geographic Information System (GIS). This research aims to map the distribution of land drought potential in Batam Island. The parameters used in this research are land use, Land Surface Temperature (LST), Potential dryness of land on the Batam island. The resulting map indicates the existence of five potential drought classes on the island of Batam. The area of very low drought potential is 2629.45 ha, mostly located in the Sungai Beduk sub-district. High drought potential with an area of 7081.39 ha is located in Sekupang sub-district. The distribution of very high land drought potential is in Batam city and Nongsa sub-district with area of 15600.12 ha. The coefficient of determination (R 2) is 0.6279. This indicates a strong positive relationship between field LST and modelled LST.

A High-Density Consensus Map of Common Wheat Integrating Four Mapping Populations Scanned by the 90K SNP Array

PubMed Central

Wen, Weie; He, Zhonghu; Gao, Fengmei; Liu, Jindong; Jin, Hui; Zhai, Shengnan; Qu, Yanying; Xia, Xianchun

2017-01-01

A high-density consensus map is a powerful tool for gene mapping, cloning and molecular marker-assisted selection in wheat breeding. The objective of this study was to construct a high-density, single nucleotide polymorphism (SNP)-based consensus map of common wheat (Triticum aestivum L.) by integrating genetic maps from four recombinant inbred line populations. The populations were each genotyped using the wheat 90K Infinium iSelect SNP assay. A total of 29,692 SNP markers were mapped on 21 linkage groups corresponding to 21 hexaploid wheat chromosomes, covering 2,906.86 cM, with an overall marker density of 10.21 markers/cM. Compared with the previous maps based on the wheat 90K SNP chip detected 22,736 (76.6%) of the SNPs with consistent chromosomal locations, whereas 1,974 (6.7%) showed different chromosomal locations, and 4,982 (16.8%) were newly mapped. Alignment of the present consensus map and the wheat expressed sequence tags (ESTs) Chromosome Bin Map enabled assignment of 1,221 SNP markers to specific chromosome bins and 819 ESTs were integrated into the consensus map. The marker orders of the consensus map were validated based on physical positions on the wheat genome with Spearman rank correlation coefficients ranging from 0.69 (4D) to 0.97 (1A, 4B, 5B, and 6A), and were also confirmed by comparison with genetic position on the previously 40K SNP consensus map with Spearman rank correlation coefficients ranging from 0.84 (6D) to 0.99 (6A). Chromosomal rearrangements reported previously were confirmed in the present consensus map and new putative rearrangements were identified. In addition, an integrated consensus map was developed through the combination of five published maps with ours, containing 52,607 molecular markers. The consensus map described here provided a high-density SNP marker map and a reliable order of SNPs, representing a step forward in mapping and validation of chromosomal locations of SNPs on the wheat 90K array. Moreover, it can be used as a reference for quantitative trait loci (QTL) mapping to facilitate exploitation of genes and QTL in wheat breeding. PMID:28848588

Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.).

PubMed

Ohmido, Nobuko; Iwata, Aiko; Kato, Seiji; Wako, Toshiyuki; Fukui, Kiichi

2018-01-01

A quantitative pachytene chromosome map of rice (Oryza sativa L.) was developed using imaging methods. The map depicts not only distribution patterns of chromomeres specific to pachytene chromosomes, but also the higher order information of chromosomal structures, such as heterochromatin (condensed regions), euchromatin (decondensed regions), the primary constrictions (centromeres), and the secondary constriction (nucleolar organizing regions, NOR). These features were image analyzed and quantitatively mapped onto the map by Chromosome Image Analyzing System ver. 4.0 (CHIAS IV). Correlation between H3K9me2, an epigenetic marker and formation and/or maintenance of heterochromatin, thus was, clearly visualized. Then the pachytene chromosome map was unified with the existing somatic chromosome and linkage maps by physically mapping common DNA markers among them, such as a rice A genome specific tandem repeat sequence (TrsA), 5S and 45S ribosomal RNA genes, five bacterial artificial chromosome (BAC) clones, four P1 bacteriophage artificial chromosome (PAC) clones using multicolor fluorescence in situ hybridization (FISH). Detailed comparison between the locations of the DNA probes on the pachytene chromosomes using multicolor FISH, and the linkage map enabled determination of the chromosome number and short/long arms of individual pachytene chromosomes using the chromosome number and arm assignment designated for the linkage map. As a result, the quantitative pachytene chromosome map was unified with two other major rice chromosome maps representing somatic prometaphase chromosomes and genetic linkages. In conclusion, the unification of the three rice maps serves as an indispensable basic information, not only for an in-depth comparison between genetic and chromosomal data, but also for practical breeding programs.

Maintaining physical activity over time: the importance of basic psychological need satisfaction in developing the physically active self.

PubMed

Springer, Judy B; Lamborn, Susie D; Pollard, Diane M

2013-01-01

Drawing from self-determination theory, this study investigated adults' perceptions of the process of long-term maintenance of physical activity and how it may relate to their self-identity. Qualitative study included 22 in-depth interviews and participants' recorded personal reflective journals. Health/fitness facility in a Midwestern city. Purposeful sample of 12 adult (age range 29-73 years) members who had engaged in regular physical activity for at least 3 years. Data were collected on participants' perceptions of processes associated with physical activity maintenance. Grounded theory data analysis techniques were used to develop an understanding of participants' long-term physical activity adherence. RESULTS. Analysis revealed three themes organized around basic psychological need satisfaction: (1) Relatedness included receiving and giving support. (2) Competence included challenge and competition, managing weight, and strategies for health management. (3) Autonomy included confidence in the established routine, valuing fitness status, and feeling self-directed. The final theme of physically active self included the personal fit of an active lifestyle, identity as an active person, and attachment to physical activity as life enhancing. Our results suggest that long-term physical activity adherence may be strengthened by promotion of the individual's basic psychological need satisfaction. Adherence is most likely to occur when the value of participation becomes internalized over time as a component of the physically active self.

Map showing length of freeze-free season in the Salina quadrangle, Utah

USGS Publications Warehouse

Covington, Harry R.

1972-01-01

In general, long freeze-free periods occur at low elevations, and short freeze-free periods occur at high elevations. But some valley floors have shorter freeze-free seasons than the glancing foothills because air cooled at high elevations flows downward and is trapped in the valleys. This temperature pattern occurs in the western part of the quadrangle in Rabbit Valley, Grass Valley, and the Sevier River Valley near Salina.Because year-round weather stations are sparse in Utah, a special technique for estimating length of freeze-free season was developed by Dr. Gaylen L. Ashcroft, Assistant Professor of Climatology, Utah State University, and E. Arlo Richardson, State Climatologist, U.S. Weather Bureau, based on average annual temperature, average annual temperature range, average daily temperature range, and average july maximum temperature. This technique was used in preparation of the map showing “Length of 32°F freeze-free season for Utah,” figure 23 in Hydrologic Atlas of Utah (Utah State University and Utah Division of Water Resources, 1968), from which the data for this map were taken.

Geologic Map of the Central Marysvale Volcanic Field, Southwestern Utah

USGS Publications Warehouse

Rowley, Peter D.; Cunningham, Charles G.; Steven, Thomas A.; Workman, Jeremiah B.; Anderson, John J.; Theissen, Kevin M.

2002-01-01

The geologic map of the central Marysvale volcanic field, southwestern Utah, shows the geology at 1:100,000 scale of the heart of one of the largest Cenozoic volcanic fields in the Western United States. The map shows the area of 38 degrees 15' to 38 degrees 42'30' N., and 112 degrees to 112 degrees 37'30' W. The Marysvale field occurs mostly in the High Plateaus, a subprovince of the Colorado Plateau and structurally a transition zone between the complexly deformed Great Basin to the west and the stable, little-deformed main part of the Colorado Plateau to the east. The western part of the field is in the Great Basin proper. The volcanic rocks and their source intrusions in the volcanic field range in age from about 31 Ma (Oligocene) to about 0.5 Ma (Pleistocene). These rocks overlie sedimentary rocks exposed in the mapped area that range in age from Ordovician to early Cenozoic. The area has been deformed by thrust faults and folds formed during the late Mesozoic to early Cenozoic Sevier deformational event, and later by mostly normal faults and folds of the Miocene to Quaternary basin-range episode. The map revises and updates knowledge gained during a long-term U.S. Geological Survey investigation of the volcanic field, done in part because of its extensive history of mining. The investigation also was done to provide framework geologic knowledge suitable for defining geologic and hydrologic hazards, for locating hydrologic and mineral resources, and for an understanding of geologic processes in the area. A previous geologic map (Cunningham and others, 1983, U.S. Geological Survey Miscellaneous Investigations Series I-1430-A) covered the same area as this map but was published at 1:50,000 scale and is obsolete due to new data. This new geologic map of the central Marysvale field, here published as U.S. Geological Survey Geologic Investigations Series I-2645-A, is accompanied by gravity and aeromagnetic maps of the same area and the same scale (Campbell and others, 1999, U.S. Geological Survey Geologic Investigations Series I-2645-B).

Evaluating Uncertainty in GHG Emission Scenarios: Mapping IAM Outlooks With an Energy System Phase Space

NASA Astrophysics Data System (ADS)

Ritchie, W. J.; Dowlatabadi, H.

2017-12-01

Climate change modeling relies on projections of future greenhouse gas emissions and other phenomena leading to changes in planetary radiative forcing (RF). Pathways for long-run fossil energy use that map to total forcing outcomes are commonly depicted with integrated assessment models (IAMs). IAMs structure outlooks for 21st-century emissions with various theories for developments in demographics, economics, land-use, energy markets and energy service demands. These concepts are applied to understand global changes in two key factors relevant for scenarios of carbon emissions: total energy use (E) this century and the carbon intensity of that energy (F/E). A simple analytical and graphical approach can also illustrate the full range of outcomes for these variables to determine if IAMs provide sufficient coverage of the uncertainty space for future energy use. In this talk, we present a method for understanding uncertainties relevant to RF scenario components in a phase space. The phase space of a dynamic system represents significant factors as axes to capture the full range of physically possible states. A two-dimensional phase space of E and F/E presents the possible system states that can lead to various levels of total 21st-century carbon emissions. Once defined in this way, a phase space of these energy system coordinates allows for rapid characterization of large IAM scenario sets with machine learning techniques. This phase space method is applied to the levels of RF described by the Representative Concentration Pathways (RCPs). The resulting RCP phase space identifies characteristics of the baseline energy system outlooks provided by IAMs for IPCC Working Group III. We conduct a k-means cluster analysis to distinguish the major features of IAM scenarios for each RCP range. Cluster analysis finds the IAM scenarios in AR5 illustrate RCPs with consistent combinations of energy resources. This suggests IAM scenarios understate uncertainty ranges for future fossil energy combustion and are overly constrained, implying it is likely easier to achieve a 1.5˚ climate policy goal than previously demonstrated.

Computing physical properties with quantum Monte Carlo methods with statistical fluctuations independent of system size.

PubMed

Assaraf, Roland

2014-12-01

We show that the recently proposed correlated sampling without reweighting procedure extends the locality (asymptotic independence of the system size) of a physical property to the statistical fluctuations of its estimator. This makes the approach potentially vastly more efficient for computing space-localized properties in large systems compared with standard correlated methods. A proof is given for a large collection of noninteracting fragments. Calculations on hydrogen chains suggest that this behavior holds not only for systems displaying short-range correlations, but also for systems with long-range correlations.

Creating and validating cis-regulatory maps of tissue-specific gene expression regulation

PubMed Central

O'Connor, Timothy R.; Bailey, Timothy L.

2014-01-01

Predicting which genomic regions control the transcription of a given gene is a challenge. We present a novel computational approach for creating and validating maps that associate genomic regions (cis-regulatory modules–CRMs) with genes. The method infers regulatory relationships that explain gene expression observed in a test tissue using widely available genomic data for ‘other’ tissues. To predict the regulatory targets of a CRM, we use cross-tissue correlation between histone modifications present at the CRM and expression at genes within 1 Mbp of it. To validate cis-regulatory maps, we show that they yield more accurate models of gene expression than carefully constructed control maps. These gene expression models predict observed gene expression from transcription factor binding in the CRMs linked to that gene. We show that our maps are able to identify long-range regulatory interactions and improve substantially over maps linking genes and CRMs based on either the control maps or a ‘nearest neighbor’ heuristic. Our results also show that it is essential to include CRMs predicted in multiple tissues during map-building, that H3K27ac is the most informative histone modification, and that CAGE is the most informative measure of gene expression for creating cis-regulatory maps. PMID:25200088

The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides.

PubMed

Engin, Ozge; Sayar, Mehmet; Erman, Burak

2009-01-13

Relative contributions of local and non-local interactions to the unfolded conformations of peptides are examined by using the rotational isomeric states model which is a Markov model based on pairwise interactions of torsion angles. The isomeric states of a residue are well described by the Ramachandran map of backbone torsion angles. The statistical weight matrices for the states are determined by molecular dynamics simulations applied to monopeptides and dipeptides. Conformational properties of tripeptides formed from combinations of alanine, valine, tyrosine and tryptophan are investigated based on the Markov model. Comparison with molecular dynamics simulation results on these tripeptides identifies the sequence-distant long-range interactions that are missing in the Markov model. These are essentially the hydrogen bond and hydrophobic interactions that are obtained between the first and the third residue of a tripeptide. A systematic correction is proposed for incorporating these long-range interactions into the rotational isomeric states model. Preliminary results suggest that the Markov assumption can be improved significantly by renormalizing the statistical weight matrices to include the effects of the long-range correlations.

The introduction of hydrogen bond and hydrophobicity effects into the rotational isomeric states model for conformational analysis of unfolded peptides

NASA Astrophysics Data System (ADS)

Engin, Ozge; Sayar, Mehmet; Erman, Burak

2009-03-01

Relative contributions of local and non-local interactions to the unfolded conformations of peptides are examined by using the rotational isomeric states model which is a Markov model based on pairwise interactions of torsion angles. The isomeric states of a residue are well described by the Ramachandran map of backbone torsion angles. The statistical weight matrices for the states are determined by molecular dynamics simulations applied to monopeptides and dipeptides. Conformational properties of tripeptides formed from combinations of alanine, valine, tyrosine and tryptophan are investigated based on the Markov model. Comparison with molecular dynamics simulation results on these tripeptides identifies the sequence-distant long-range interactions that are missing in the Markov model. These are essentially the hydrogen bond and hydrophobic interactions that are obtained between the first and the third residue of a tripeptide. A systematic correction is proposed for incorporating these long-range interactions into the rotational isomeric states model. Preliminary results suggest that the Markov assumption can be improved significantly by renormalizing the statistical weight matrices to include the effects of the long-range correlations.

Preliminary surficial geologic map database of the Amboy 30 x 60 minute quadrangle, California

USGS Publications Warehouse

Bedford, David R.; Miller, David M.; Phelps, Geoffrey A.

2006-01-01

The surficial geologic map database of the Amboy 30x60 minute quadrangle presents characteristics of surficial materials for an area approximately 5,000 km2 in the eastern Mojave Desert of California. This map consists of new surficial mapping conducted between 2000 and 2005, as well as compilations of previous surficial mapping. Surficial geology units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects occurring post-deposition, and, where appropriate, the lithologic nature of the material. The physical properties recorded in the database focus on those that drive hydrologic, biologic, and physical processes such as particle size distribution (PSD) and bulk density. This version of the database is distributed with point data representing locations of samples for both laboratory determined physical properties and semi-quantitative field-based information. Future publications will include the field and laboratory data as well as maps of distributed physical properties across the landscape tied to physical process models where appropriate. The database is distributed in three parts: documentation, spatial map-based data, and printable map graphics of the database. Documentation includes this file, which provides a discussion of the surficial geology and describes the format and content of the map data, a database 'readme' file, which describes the database contents, and FGDC metadata for the spatial map information. Spatial data are distributed as Arc/Info coverage in ESRI interchange (e00) format, or as tabular data in the form of DBF3-file (.DBF) file formats. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files, and are appropriate for representing a view of the spatial database at the mapped scale.

Ab Initio Study of KCl and AgCl Clusters.

NASA Astrophysics Data System (ADS)

McKeough, James; Hira, Ajit; Cathey, Tommy; Valdez, Alexandra

This paper presents a theoretical study of molecular clusters that examines the chemical and physical properties of small KnCln and AgnCln clusters (n = 2 - 24). Due to combinations of attractive and repulsive long-range forces, such clusters exhibit structural and dynamical behavior different from that of homogeneous clusters. The potentially important role of these molecular species in biochemical and medicinal processes is widely known. This work applies the hybrid ab initio methods to derive the different alkali-halide (MnHn) geometries. Of particular interest is the competition between hexagonal ring geometries and rock salt structures. Electronic energies, rotational constants, dipole moments, and vibrational frequencies for these geometries are calculated. Magic numbers for cluster stability are identified and are related to the property of cluster compactness. Mapping of the singlet, triplet, and quintet, potential energy surfaces is performed. Calculations were performed to examine the interactions of these clusters with some atoms and molecules of biological interest, including O, O2, and Fe. Potential design of new medicinal drugs is explored. We will also investigate model and material dependence of the results. AMP program of the National Science Foundation.

Norwegian millstone quarry landscapes

NASA Astrophysics Data System (ADS)

Heldal, Tom; Meyer, Gurli; Grenne, Tor

2013-04-01

Rotary querns and millstones were used in Norway since just after the Roman Period until the last millstone was made in the 1930s. Throughout all this time millstone mining was fundamental for daily life: millstones were needed to grind grain, our most important food source. We can find millstone quarries in many places in the country from coast to mountain. Some of them cover many square kilometers and count hundreds of quarries as physical testimonies of a long and great production history. Other quarries are small and hardly visible. Some of this history is known through written and oral tradition, but most of it is hidden and must be reconstructed from the traces we can find in the landscape today. The Millstone project has put these quarry landscapes on the map, and conducted a range of case studies, including characterization of archaeological features connected to the quarrying, interpretation of quarrying techniques and evolution of such and establishing distribution and trade patterns by the aid of geological provenance. The project also turned out to be a successful cooperation between different disciplines, in particular geology and archaeology.

The Fundamental Physical Processes Producing and Controlling Stellar Coronal/ Transition-Region/Chromospheric Activity and Structure

NASA Technical Reports Server (NTRS)

Ayres, Thomas R.; Brown, Alexander

1998-01-01

Our LTSA grant supports a long-term collaborative investigation of stellar activity. The project involves current NASA spacecraft and supporting ground-based telescopes, will make use of future missions, and utilizes the extensive archives of IUE, ROSAT, HST, and EUVE. Our interests include observational work (with a nonnegligible groundbased component); specialized processing techniques for imaging and spectral data; and semiempirical modeling, ranging from optically-thin emission measure studies to simulations of optically-thick resonance lines. Collaborations with our cool-star colleagues here in Boulder (at JILA and the High Altitude Observatory) provide access to even broader expertise, particularly on the solar corona, convection, and magnetohydrodynamic phenomena (including "dynamo" theories). The broad-brush of our investigation include the following: (1) where do coronae occur in the Hertzsprung-Russell diagram? (2) the winds of coronal stars: hot, cool, or both? (3) age, activity, rotation relations; (4) atmospheric inhomogeneities; and (5) heating mechanisms, subcoronal flows and flares. Our observation task has been to map the global properties of chromospheres and coronae in the H-R diagram and conduct detailed studies of key objects.

Geologic map of the Harvard Lakes 7.5' quadrangle, Park and Chaffee Counties, Colorado

USGS Publications Warehouse

Kellogg, Karl S.; Lee, Keenan; Premo, Wayne R.; Cosca, Michael A.

2013-01-01

The Harvard Lakes 1:24,000-scale quadrangle spans the Arkansas River Valley in central Colorado, and includes the foothills of the Sawatch Range on the west and Mosquito Range on the east. The Arkansas River valley lies in the northern end of the Rio Grande rift and is structurally controlled by Oligocene and younger normal faults mostly along the west side of the valley. Five separate pediment surfaces were mapped, and distinctions were made between terraces formed by the Arkansas River and surfaces that formed from erosion and alluviation that emanated from the Sawatch Range. Three flood deposits containing boulders as long as 15 m were deposited from glacial breakouts just north of the quadrangle. Miocene and Pliocene basin-fill deposits of the Dry Union Formation are exposed beneath terrace or pediment deposits in several places. The southwestern part of the late Eocene Buffalo Peaks volcanic center, mostly andesitic breccias and flows and ash-flow tuffs, occupy the northeastern corner of the map. Dated Tertiary intrusive rocks include Late Cretaceous or early Paleocene hornblende gabbro and hornblende monzonite. Numerous rhyolite and dacite dikes of inferred early Tertiary or Late Cretaceous age also intrude the basement rocks. Basement rocks are predominantly Mesoproterozoic granites, and subordinately Paleoproterozoic biotite gneiss and granitic gneiss.

Integration of Satellite Tracking Data and Satellite Images for Detailed Characteristics of Wildlife Habitats

NASA Astrophysics Data System (ADS)

Dobrynin, D. V.; Rozhnov, V. V.; Saveliev, A. A.; Sukhova, O. V.; Yachmennikova, A. A.

2017-12-01

Methods of analysis of the results got from satellite tracking of large terrestrial mammals differ in the level of their integration with additional geographic data. The reliable fine-scale cartographic basis for assessing specific wildlife habitats can be developed through the interpretation of multispectral remote sensing data and extrapolation of the results to the entire estimated species range. Topographic maps were ordinated according to classified features using self-organizing maps (Kohonen's SOM). The satellite image of the Ussuriiskyi Nature Reserve area was interpreted for the analysis of movement conditions for seven wild Amur tigers ( Panthera tigris altaica) equipped with GPS collars. 225 SOM classes for cartographic visualization are sufficient for the detailed mapping of all natural complexes that were identified as a result of interpretation. During snow-free periods, tigers preferred deciduous and shrub associations at lower elevations, as well as mixed forests in the valleys of streams that are adjacent to sparse forests and shrub watershed in the mountain ranges; during heavy snow periods, the animals preferred the entire range of plant communities in different relief types, except for open sites in meadows and abandoned fields at foothills. The border zones of different biotopes were typically used by the tigers during all seasons. Amur tigers preferred coniferous forests for long-term movements.

Using Playground Maps for Movement

ERIC Educational Resources Information Center

Colvin, A. Vonnie

2016-01-01

Many schools now decorate their outside hard surface areas with maps. These maps provide color and excitement to a playground and are a terrific teaching tool for geography. But these maps can easily be integrated into physical education as well to promote both physical activity as well as knowledge of geography. The purpose of this article is to…

Construction of an ultra-high density consensus genetic map, and enhancement of the physical map from genome sequencing in Lupinus angustifolius.

PubMed

Zhou, Gaofeng; Jian, Jianbo; Wang, Penghao; Li, Chengdao; Tao, Ye; Li, Xuan; Renshaw, Daniel; Clements, Jonathan; Sweetingham, Mark; Yang, Huaan

2018-01-01

An ultra-high density genetic map containing 34,574 sequence-defined markers was developed in Lupinus angustifolius. Markers closely linked to nine genes of agronomic traits were identified. A physical map was improved to cover 560.5 Mb genome sequence. Lupin (Lupinus angustifolius L.) is a recently domesticated legume grain crop. In this study, we applied the restriction-site associated DNA sequencing (RADseq) method to genotype an F 9 recombinant inbred line population derived from a wild type × domesticated cultivar (W × D) cross. A high density linkage map was developed based on the W × D population. By integrating sequence-defined DNA markers reported in previous mapping studies, we established an ultra-high density consensus genetic map, which contains 34,574 markers consisting of 3508 loci covering 2399 cM on 20 linkage groups. The largest gap in the entire consensus map was 4.73 cM. The high density W × D map and the consensus map were used to develop an improved physical map, which covered 560.5 Mb of genome sequence data. The ultra-high density consensus linkage map, the improved physical map and the markers linked to genes of breeding interest reported in this study provide a common tool for genome sequence assembly, structural genomics, comparative genomics, functional genomics, QTL mapping, and molecular plant breeding in lupin.

High-resolution meiotic and physical mapping of the Best vitelliform macular dystrophy (VMD2) locus to pericentromeric chromosome 11

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weber, B.H.F.; Vogt, G.; Stoehr, H.

1994-12-01

Best vitelliform macular dystrophy (VMD2) has previously been linked to several microsatellite markers from chromosome 11. Subsequently, additional genetic studies have refined the Best disease region to a 3.7-cM interval flanked by markers at D11S903 and PYGM. To further narrow the interval containing the Best disease gene and to obtain an estimate of the physical size of the minimal candidate region, we used a combination of high-resolution PCR hybrid mapping and analysis of recombinant Best disease chromosomes. We identified six markers from within the D11S903-PYGM interval that show no recombination with the defective gene in three multigeneration Best disease pedigrees.more » Our hybrid panel localizes these markers on either side of the centromere on chromosome 11. The closest markers flanking the disease gene are at D11S986 in band p12-11.22 on the short arm and at D11S480 in band q13.2-13.3 on the proximal long arm. This study demonstrates that the physical size of the Best disease region is exceedingly larger than previously estimated from the genetic data, because of the proximity of the defective gene to the centromere of chromosome 11.« less

Met The Press: What It's LIke to Talk to Reporters about Physics

NASA Astrophysics Data System (ADS)

Thompson, Rebecca

2013-03-01

Someone from the Huffington Post just called you because they are doing a story about science and you are a physicist. The problem is that they need you to take time away from your grapheme experiments to talk about the physics of exploding anvils. It's been a long time since you've shot an anvil in the air so you think you might not be right for this. But, as long as you understand general physics and can explain things well, you can be a real asset. This talk will recount first-hand experiences talking to a range of news outlets from the PBS New Hour to Real Simple Magazine about everything from quick-freezing water to pumpkin boats. It will include helpful information about preparing for an interview, learning new physics fast, timelines and follow-up.

Electrostatic attraction of coupled Wigner crystals: finite temperature effects.

PubMed

Lau, A W; Pincus, P; Levine, D; Fertig, H A

2001-05-01

In this paper we present a unified physical picture for the electrostatic attraction between two coupled planar Wigner crystals at finite temperature. This model may facilitate our conceptual understanding of counterion-mediated attractions between (highly) similarly charged planes. By adopting an elastic theory, we show that the total attractive force between them can be (approximately) decomposed into a short-ranged and a long-ranged component. They are evaluated below the melting temperature of the Wigner crystals. In particular, we analyze the temperature dependence of the short-ranged attraction, arising from ground-state configuration, and we argue that thermal fluctuations may drastically reduce its strength. Also, the long-range force agrees exactly with that based on the charge-fluctuation approach. Furthermore, we take quantum contributions to the long-ranged (fluctuation-induced) attraction into account and show how the fractional power law, which scales as d(-7/2) for large interplanar distance d at zero temperature, crosses over to the classical regime d(-3) via an intermediate regime of d(-2).

Program Setup Time and Learning Curves associated with "ready to fly" Drone Mapping Hardware and Software.

NASA Astrophysics Data System (ADS)

Wilcox, T.

2016-12-01

How quickly can students (and educators) get started using a "ready to fly" UAS and popular publicly available photogrammetric mapping software for student research at the undergraduate level? This poster presentation focuses on the challenges of starting up your own drone-mapping program for undergraduate research in a compressed timescale of three months. Particular focus will be given to learning the operation of the platforms, hardware and software interface challenges, and using these electronic systems in real-world field settings that pose a range of physical challenges to both operators and equipment. We will be using a combination of the popular DJI Phantom UAS and Pix4D mapping software to investigate mass wasting processes and potential hazards present in public lands popular with recreational users. Projects are aimed at characterizing active geological hazards that operate on short timescales and may include gully headwall erosion in Flaming Geyser State Park and potential landslide instability within Capital State Forest, both in the Puget Sound region of Washington State.

A Statistical Examination of Magnetic Field Model Accuracy for Mapping Geosynchronous Solar Energetic Particle Observations to Lower Earth Orbits

NASA Astrophysics Data System (ADS)

Young, S. L.; Kress, B. T.; Rodriguez, J. V.; McCollough, J. P.

2013-12-01

Operational specifications of space environmental hazards can be an important input used by decision makers. Ideally the specification would come from on-board sensors, but for satellites where that capability is not available another option is to map data from remote observations to the location of the satellite. This requires a model of the physical environment and an understanding of its accuracy for mapping applications. We present a statistical comparison between magnetic field model mappings of solar energetic particle observations made by NOAA's Geostationary Operational Environmental Satellites (GOES) to the location of the Combined Release and Radiation Effects Satellite (CRRES). Because CRRES followed a geosynchronous transfer orbit which precessed in local time this allows us to examine the model accuracy between LEO and GEO orbits across a range of local times. We examine the accuracy of multiple magnetic field models using a variety of statistics and examine their utility for operational purposes.

Crustal modeling of the central part of the Northern Western Desert, Egypt using gravity data

NASA Astrophysics Data System (ADS)

Alrefaee, H. A.

2017-05-01

The Bouguer anomaly map of the central part of the Northern Western Desert, Egypt was used to construct six 2D gravity models to investigate the nature, physical properties and structures of the crust and upper mantle. The crustal models were constrained and constructed by integrating results from different geophysical techniques and available geological information. The depth to the basement surface, from eight wells existed across the study area, and the depth to the Conrad and Moho interfaces as well as physical properties of sediments, basement, crust and upper mantle from previous petrophysical and crustal studies were used to establish the gravity models. Euler deconvolution technique was carried on the Bouguer anomaly map to detect the subsurface fault trends. Edge detection techniques were calculated to outlines the boundaries of subsurface structural features. Basement structural map was interpreted to reveal the subsurface structural setting of the area. The crustal models reveals increasing of gravity field from the south to the north due to northward thinning of the crust. The models reveals also deformed and rugged basement surface with northward depth increasing from 1.6 km to 6 km. In contrast to the basement, the Conrad and Moho interfaces are nearly flat and get shallower northward where the depth to the Conrad or the thickness of the upper crust ranges from 18 km to 21 km while the depth to the Moho (crustal thickness) ranges from 31.5 km to 34 km. The crust beneath the study area is normal continental crust with obvious thinning toward the continental margin at the Mediterranean coast.

PERSISTENCE MAPPING USING EUV SOLAR IMAGER DATA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, B. J.; Young, C. A., E-mail: barbara.j.thompson@nasa.gov

We describe a simple image processing technique that is useful for the visualization and depiction of gradually evolving or intermittent structures in solar physics extreme-ultraviolet imagery. The technique is an application of image segmentation, which we call “Persistence Mapping,” to isolate extreme values in a data set, and is particularly useful for the problem of capturing phenomena that are evolving in both space and time. While integration or “time-lapse” imaging uses the full sample (of size N ), Persistence Mapping rejects ( N − 1)/ N of the data set and identifies the most relevant 1/ N values using themore » following rule: if a pixel reaches an extreme value, it retains that value until that value is exceeded. The simplest examples isolate minima and maxima, but any quantile or statistic can be used. This paper demonstrates how the technique has been used to extract the dynamics in long-term evolution of comet tails, erupting material, and EUV dimming regions.« less

Solitonic Josephson-based meminductive systems

DOE PAGES

Guarcello, Claudio; Solinas, Paolo; Di Ventra, Massimiliano; ...

2017-04-24

Memristors, memcapacitors, and meminductors represent an innovative generation of circuit elements whose properties depend on the state and history of the system. The hysteretic behavior of one of their constituent variables, is their distinctive fingerprint. This feature endows them with the ability to store and process information on the same physical location, a property that is expected to benefit many applications ranging from unconventional computing to adaptive electronics to robotics. Therefore, it is important to find appropriate memory elements that combine a wide range of memory states, long memory retention times, and protection against unavoidable noise. Although several physical systemsmore » belong to the general class of memelements, few of them combine these important physical features in a single component. Here in this paper, we demonstrate theoretically a superconducting memory based on solitonic long Josephson junctions. Moreover, since solitons are at the core of its operation, this system provides an intrinsic topological protection against external perturbations. We show that the Josephson critical current behaves hysteretically as an external magnetic field is properly swept. Accordingly, long Josephson junctions can be used as multi-state memories, with a controllable number of available states, and in other emerging areas such as memcomputing, i.e., computing directly in/by the memory.« less

Solitonic Josephson-based meminductive systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guarcello, Claudio; Solinas, Paolo; Di Ventra, Massimiliano

Memristors, memcapacitors, and meminductors represent an innovative generation of circuit elements whose properties depend on the state and history of the system. The hysteretic behavior of one of their constituent variables, is their distinctive fingerprint. This feature endows them with the ability to store and process information on the same physical location, a property that is expected to benefit many applications ranging from unconventional computing to adaptive electronics to robotics. Therefore, it is important to find appropriate memory elements that combine a wide range of memory states, long memory retention times, and protection against unavoidable noise. Although several physical systemsmore » belong to the general class of memelements, few of them combine these important physical features in a single component. Here in this paper, we demonstrate theoretically a superconducting memory based on solitonic long Josephson junctions. Moreover, since solitons are at the core of its operation, this system provides an intrinsic topological protection against external perturbations. We show that the Josephson critical current behaves hysteretically as an external magnetic field is properly swept. Accordingly, long Josephson junctions can be used as multi-state memories, with a controllable number of available states, and in other emerging areas such as memcomputing, i.e., computing directly in/by the memory.« less

Quantum Well Infrared Photodetectors: Device Physics and Light Coupling

NASA Technical Reports Server (NTRS)

Bandara, S. V.; Gunapala, S. D.; Liu, J. K.; Mumolo, J.; Luong, E.; Hong, W.; Sengupta, D. K.

1997-01-01

It is customary to make infrared (IR) detectors in the long wavelength range by utilizing the interband transition which promotes an electron across the band gap (Eg) from the valence band to the conduction.

Marbles: A Means of Introducing Students to Scattering Concepts

ERIC Educational Resources Information Center

Bender, K. M.; Westphal, P. S.; Ramsier, R. D.

2008-01-01

The purpose of this activity is to introduce students to concepts of short-range and long-range scattering, and engage them in using indirect measurements and probabilistic models. The activity uses simple and readily available apparatus, and can be adapted for use with secondary level students as well as those in general physics courses or…

Determining position inside building via laser rangefinder and handheld computer

DOEpatents

Ramsey, Jr James L. [Albuquerque, NM; Finley, Patrick [Albuquerque, NM; Melton, Brad [Albuquerque, NM

2010-01-12

An apparatus, computer software, and a method of determining position inside a building comprising selecting on a PDA at least two walls of a room in a digitized map of a building or a portion of a building, pointing and firing a laser rangefinder at corresponding physical walls, transmitting collected range information to the PDA, and computing on the PDA a position of the laser rangefinder within the room.

Long-Term Dynamics of Autonomous Fractional Differential Equations

NASA Astrophysics Data System (ADS)

Liu, Tao; Xu, Wei; Xu, Yong; Han, Qun

This paper aims to investigate long-term dynamic behaviors of autonomous fractional differential equations with effective numerical method. The long-term dynamic behaviors predict where systems are heading after long-term evolution. We make some modification and transplant cell mapping methods to autonomous fractional differential equations. The mapping time duration of cell mapping is enlarged to deal with the long memory effect. Three illustrative examples, i.e. fractional Lotka-Volterra equation, fractional van der Pol oscillator and fractional Duffing equation, are studied with our revised generalized cell mapping method. We obtain long-term dynamics, such as attractors, basins of attraction, and saddles. Compared with some existing stability and numerical results, the validity of our method is verified. Furthermore, we find that the fractional order has its effect on the long-term dynamics of autonomous fractional differential equations.

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species

PubMed Central

Misra, Gopal; Gupta, Sarika; Subramanian, Alagesan; Parida, Swarup Kumar; Chattopadhyay, Debasis; Prasad, Manoj

2013-01-01

Foxtail millet ( Setaria italica L.) is a tractable experimental model crop for studying functional genomics of millets and bioenergy grasses. But the limited availability of genomic resources, particularly expressed sequence-based genic markers is significantly impeding its genetic improvement. Considering this, we attempted to develop EST-derived-SSR (eSSR) markers and utilize them in germplasm characterization, cross-genera transferability and in silico comparative mapping. From 66,027 foxtail millet EST sequences 24,828 non-redundant ESTs were deduced, representing ~16 Mb, which revealed 534 (~2%) eSSRs in 495 SSR containing ESTs at a frequency of 1/30 kb. A total of 447 pp were successfully designed, of which 327 were mapped physically onto nine chromosomes. About 106 selected primer pairs representing the foxtail millet genome showed high-level of cross-genera amplification at an average of ~88% in eight millets and four non-millet species. Broad range of genetic diversity (0.02–0.65) obtained in constructed phylogenetic tree using 40 eSSR markers demonstrated its utility in germplasm characterizations and phylogenetics. Comparative mapping of physically mapped eSSR markers showed considerable proportion of sequence-based orthology and syntenic relationship between foxtail millet chromosomes and sorghum (~68%), maize (~61%) and rice (~42%) chromosomes. Synteny analysis of eSSRs of foxtail millet, rice, maize and sorghum suggested the nested chromosome fusion frequently observed in grass genomes. Thus, for the first time we had generated large-scale eSSR markers in foxtail millet and demonstrated their utility in germplasm characterization, transferability, phylogenetics and comparative mapping studies in millets and bioenergy grass species. PMID:23805325

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species.

PubMed

Kumari, Kajal; Muthamilarasan, Mehanathan; Misra, Gopal; Gupta, Sarika; Subramanian, Alagesan; Parida, Swarup Kumar; Chattopadhyay, Debasis; Prasad, Manoj

2013-01-01

Foxtail millet (Setariaitalica L.) is a tractable experimental model crop for studying functional genomics of millets and bioenergy grasses. But the limited availability of genomic resources, particularly expressed sequence-based genic markers is significantly impeding its genetic improvement. Considering this, we attempted to develop EST-derived-SSR (eSSR) markers and utilize them in germplasm characterization, cross-genera transferability and in silico comparative mapping. From 66,027 foxtail millet EST sequences 24,828 non-redundant ESTs were deduced, representing ~16 Mb, which revealed 534 (~2%) eSSRs in 495 SSR containing ESTs at a frequency of 1/30 kb. A total of 447 pp were successfully designed, of which 327 were mapped physically onto nine chromosomes. About 106 selected primer pairs representing the foxtail millet genome showed high-level of cross-genera amplification at an average of ~88% in eight millets and four non-millet species. Broad range of genetic diversity (0.02-0.65) obtained in constructed phylogenetic tree using 40 eSSR markers demonstrated its utility in germplasm characterizations and phylogenetics. Comparative mapping of physically mapped eSSR markers showed considerable proportion of sequence-based orthology and syntenic relationship between foxtail millet chromosomes and sorghum (~68%), maize (~61%) and rice (~42%) chromosomes. Synteny analysis of eSSRs of foxtail millet, rice, maize and sorghum suggested the nested chromosome fusion frequently observed in grass genomes. Thus, for the first time we had generated large-scale eSSR markers in foxtail millet and demonstrated their utility in germplasm characterization, transferability, phylogenetics and comparative mapping studies in millets and bioenergy grass species.

Gridded uncertainty in fossil fuel carbon dioxide emission maps, a CDIAC example

DOE PAGES

Andres, Robert J.; Boden, Thomas A.; Higdon, David M.

2016-12-05

Due to a current lack of physical measurements at appropriate spatial and temporal scales, all current global maps and distributions of fossil fuel carbon dioxide (FFCO2) emissions use one or more proxies to distribute those emissions. These proxies and distribution schemes introduce additional uncertainty into these maps. This paper examines the uncertainty associated with the magnitude of gridded FFCO2 emissions. This uncertainty is gridded at the same spatial and temporal scales as the mass magnitude maps. This gridded uncertainty includes uncertainty contributions from the spatial, temporal, proxy, and magnitude components used to create the magnitude map of FFCO2 emissions. Throughoutmore » this process, when assumptions had to be made or expert judgment employed, the general tendency in most cases was toward overestimating or increasing the magnitude of uncertainty. The results of the uncertainty analysis reveal a range of 4–190 %, with an average of 120 % (2 σ) for populated and FFCO2-emitting grid spaces over annual timescales. This paper also describes a methodological change specific to the creation of the Carbon Dioxide Information Analysis Center (CDIAC) FFCO2 emission maps: the change from a temporally fixed population proxy to a temporally varying population proxy.« less

Gridded uncertainty in fossil fuel carbon dioxide emission maps, a CDIAC example

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andres, Robert J.; Boden, Thomas A.; Higdon, David M.

Due to a current lack of physical measurements at appropriate spatial and temporal scales, all current global maps and distributions of fossil fuel carbon dioxide (FFCO2) emissions use one or more proxies to distribute those emissions. These proxies and distribution schemes introduce additional uncertainty into these maps. This paper examines the uncertainty associated with the magnitude of gridded FFCO2 emissions. This uncertainty is gridded at the same spatial and temporal scales as the mass magnitude maps. This gridded uncertainty includes uncertainty contributions from the spatial, temporal, proxy, and magnitude components used to create the magnitude map of FFCO2 emissions. Throughoutmore » this process, when assumptions had to be made or expert judgment employed, the general tendency in most cases was toward overestimating or increasing the magnitude of uncertainty. The results of the uncertainty analysis reveal a range of 4–190 %, with an average of 120 % (2 σ) for populated and FFCO2-emitting grid spaces over annual timescales. This paper also describes a methodological change specific to the creation of the Carbon Dioxide Information Analysis Center (CDIAC) FFCO2 emission maps: the change from a temporally fixed population proxy to a temporally varying population proxy.« less

Gridded uncertainty in fossil fuel carbon dioxide emission maps, a CDIAC example

NASA Astrophysics Data System (ADS)

Andres, Robert J.; Boden, Thomas A.; Higdon, David M.

2016-12-01

Due to a current lack of physical measurements at appropriate spatial and temporal scales, all current global maps and distributions of fossil fuel carbon dioxide (FFCO2) emissions use one or more proxies to distribute those emissions. These proxies and distribution schemes introduce additional uncertainty into these maps. This paper examines the uncertainty associated with the magnitude of gridded FFCO2 emissions. This uncertainty is gridded at the same spatial and temporal scales as the mass magnitude maps. This gridded uncertainty includes uncertainty contributions from the spatial, temporal, proxy, and magnitude components used to create the magnitude map of FFCO2 emissions. Throughout this process, when assumptions had to be made or expert judgment employed, the general tendency in most cases was toward overestimating or increasing the magnitude of uncertainty. The results of the uncertainty analysis reveal a range of 4-190 %, with an average of 120 % (2σ) for populated and FFCO2-emitting grid spaces over annual timescales. This paper also describes a methodological change specific to the creation of the Carbon Dioxide Information Analysis Center (CDIAC) FFCO2 emission maps: the change from a temporally fixed population proxy to a temporally varying population proxy.

ngVLA Key Science Goal 3: Charting the Assembly, Structure, and Evolution of Galaxies Over Cosmic Time

NASA Astrophysics Data System (ADS)

Riechers, Dominik A.; Bolatto, Alberto D.; Carilli, Chris; Casey, Caitlin M.; Decarli, Roberto; Murphy, Eric Joseph; Narayanan, Desika; Walter, Fabian; ngVLA Galaxy Assembly through Cosmic Time Science Working Group, ngVLA Galaxy Ecosystems Science Working Group

2018-01-01

The Next Generation Very Large Array (ngVLA) will fundamentally advance our understanding of the formation processes that lead to the assembly of galaxies throughout cosmic history. The combination of large bandwidth with unprecedented sensitivity to the critical low-level CO lines over virtually the entire redshift range will open up the opportunity to conduct large-scale, deep cold molecular gas surveys, mapping the fuel for star formation in galaxies over substantial cosmic volumes. Imaging of the sub-kiloparsec scale distribution and kinematic structure of molecular gas in both normal main-sequence galaxies and large starbursts back to early cosmic epochs will reveal the physical processes responsible for star formation and black hole growth in galaxies over a broad range in redshifts. In the nearby universe, the ngVLA has the capability to survey the structure of the cold, star-forming interstellar medium at parsec-resolution out to the Virgo cluster. A range of molecular tracers will be accessible to map the motion, distribution, and physical and chemical state of the gas as it flows in from the outer disk, assembles into clouds, and experiences feedback due to star formation or accretion into central super-massive black holes. These investigations will crucially complement studies of the star formation and stellar mass histories with the Large UV/Optical/Infrared Surveyor and the Origins Space Telescope, providing the means to obtain a comprehensive picture of galaxy evolution through cosmic times.

Piroxicam derivatives THz classification

NASA Astrophysics Data System (ADS)

Sterczewski, Lukasz A.; Grzelczak, Michal P.; Nowak, Kacper; Szlachetko, Bogusław; Plinska, Stanislawa; Szczesniak-Siega, Berenika; Malinka, Wieslaw; Plinski, Edward F.

2016-02-01

In this paper we report a new approach to linking the terahertz spectral shapes of drug candidates having a similar molecular structure to their chemical and physical parameters. We examined 27 newly-synthesized derivatives of a well-known nonsteroidal anti-inflammatory drug Piroxicam used for treatment of inflammatory arthritis and chemoprevention of colon cancer. The testing was carried out by means of terahertz pulsed spectroscopy (TPS). Using chemometric techniques we evaluated their spectral similarity in the terahertz range and attempted to link the position on the principal component analysis (PCA) score map to the similarity of molecular descriptors. A simplified spectral model preserved 75% and 85.1% of the variance in 2 and 3 dimensions respectively, compared to the input 1137. We have found that in 85% of the investigated samples a similarity of the physical and chemical parameters corresponds to a similarity in the terahertz spectra. The effects of data preprocessing on the generated maps are also discussed. The technique presented can support the choice of the most promising drug candidates for clinical trials in pharmacological research.

The GlueX Experiment: First Results

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fanelli, Cristiano

GlueX is a nuclear physics experiment located at the Thomas Jefferson National Accelerator Facility designed to study and understand the nature of confinement in QCD by mapping the spectrum of exotic mesons. The experiment will be able to probe new areas by using photoproduction, i.e. the scattering on nucleon of ~9 GeV linearly polarized photons derived from the recently upgraded CEBAF with a 12 GeV electron beam. Spring 2016 has been characterized by a continued detector commissioning and initial running at the full design energy. The current status of the GlueX detector performance and data collection will be discussed, withmore » a brief overview of first physics results, future run plans, and long term upgrades.« less

Quaternary geomorphology and modern coastal development in response to an inherent geologic framework: An example from Charleston, South Carolina

USGS Publications Warehouse

Harris, M.S.; Gayes, P.T.; Kindinger, J.L.; Flocks, J.G.; Krantz, D.E.; Donovan, P.

2005-01-01

Coastal landscapes evolve over wide-ranging spatial and temporal scales in response to physical and biological pro-cesses that interact with a wide range of variables. To develop better predictive models for these dynamic areas, we must understand the influence of these variables on coastal morphologies and ultimately how they influence coastal processes. This study defines the influence of geologic framework variability on a classic mixed-energy coastline, and establishes four categorical scales of spatial and temporal influence on the coastal system. The near-surface, geologic framework was delineated using high-resolution seismic profiles, shallow vibracores, detailed geomorphic maps, historical shorelines, aerial photographs, and existing studies, and compared to the long- and short-term development of two coastal compartments near Charleston, South Carolina. Although it is clear that the imprint of a mixed-energy tidal and wave signal (basin-scale) dictates formation of drumstick barriers and that immediate responses to wave climate are dramatic, island size, position, and longer-term dynamics are influenced by a series of inherent, complex near-surface stratigraphic geometries. Major near-surface Tertiary geometries influence inlet placement and drainage development (island-scale) through multiple interglacial cycles and overall channel morphology (local-scale). During the modern marine transgression, the halo of ebb-tidal deltas greatly influence inlet region dynamics, while truncated beach ridges and exposed, differentially erodable Cenozoic deposits in the active system influence historical shoreline dynamics and active shoreface morphologies (blockscale). This study concludes that the mixed-energy imprint of wave and tide theories dominates general coastal morphology, but that underlying stratigraphic influences on the coast provide site-specific, long-standing imprints on coastal evolution.

Physical and mechanical properties of parallel strand lumber made from hot pre-pressed long strand oil palm trunk waste

NASA Astrophysics Data System (ADS)

Fridiyanti, Inayah; Massijaya, M. Y.

2018-03-01

This research was focused on the utilization of oil palm trunk waste as a Parallel Strand Lumber (PSL) raw material. This research aimed to analyze the effect of adhesive types and glue spreads to the physical and mechanical properties of PSL. The adhesive types used were isocyanate and urea formaldehyde adhesives. The glue spreads used were 150 g/m2 and 300 g/m2. The research results showed that the moisture content of PSL ranged from 9.30% to 11.80%. The PSL density ranged from 0.64 to 0.78 g/cm3. The volume shrinkage ranged from 5.69 to 7.17%. Modulus of Elasticity (MOE) parallel to the grain and edge side ranged from 51.6 × 103 to 98.3 × 103 kg/cm2, and 62.1 × 103 to 99.9 × 103 kg/cm2, respectively. The Modulus of Rupture (MOR) parallel to the grain and edge side ranged from 269 to 724 kg/cm2 and 342 to 728 kg/cm2, respectively. The PSL hardness perpendicular to the grain, parallel to the grain and the edge side ranged from 135 to 300 kg/cm2, 87 to 321 kg/cm2, and 128 to 251 kg/cm2, respectively. The compressive strength ranged from 181 to 231 kg/cm2. The best adhesive and glue spreads of PSL was isocyanate with glue spread 300 g/m2. PSL made from hot pre-pressed long strand of oil palm trunk waste bonded by isocyanate fulfill JAS 1152: 2007. However, those of bonded by urea formaldehyde failed to fulfill the standard. The physical and mechanical properties of PSL made from oil palm trunk were better compared to those of solid oil palm trunk.

Abnormal functional connectivity density in children with anisometropic amblyopia at resting-state.

PubMed

Wang, Tianyue; Li, Qian; Guo, Mingxia; Peng, Yanmin; Li, Qingji; Qin, Wen; Yu, Chunshui

2014-05-14

Amblyopia is a developmental disorder resulting from anomalous binocular visual input in early life. Task-based neuroimaging studies have widely investigated cortical functional impairments in amblyopia, but changes in spontaneous neuronal functional activities in amblyopia remain largely unknown. In the present study, functional connectivity density (FCD) mapping, an ultrafast data-driven method based on fMRI, was applied for the first time to investigate changes in cortical functional connectivities in amblyopia during the resting-state. We quantified and compared both short- and long-range FCD in both the brains of children with anisometropic amblyopia (AAC) and normal sighted children (NSC). In contrast to the NSC, the AAC showed significantly decreased short-range FCD in the inferior temporal/fusiform gyri, parieto-occipital and rostrolateral prefrontal cortices, as well as decreased long-range FCD in the premotor cortex, dorsal inferior parietal lobule, frontal-insular and dorsal prefrontal cortices. Furthermore, most regions with reduced long-range FCD in the AAC showed decreased functional connectivity with occipital and posterior parietal cortices in the AAC. The results suggest that chronically poor visual input in amblyopia not only impairs the brain's short-range functional connections in visual pathways and in the frontal cortex, which is important for cognitive control, but also affects long-range functional connections among the visual areas, posterior parietal and frontal cortices that subserve visuomotor and visual-guided actions, visuospatial attention modulation and the integration of salient information. This study provides evidence for abnormal spontaneous brain activities in amblyopia. Copyright © 2014 Elsevier B.V. All rights reserved.

Validation of a mapping and prediction model for human fasciolosis transmission in Andean very high altitude endemic areas using remote sensing data.

PubMed

Fuentes, M V; Malone, J B; Mas-Coma, S

2001-04-27

The present paper aims to validate the usefulness of the Normalized Difference Vegetation Index (NDVI) obtained by satellite remote sensing for the development of local maps of risk and for prediction of human fasciolosis in the Northern Bolivian Altiplano. The endemic area, which is located at very high altitudes (3800-4100 m) between Lake Titicaca and the valley of the city of La Paz, presents the highest prevalences and intensities of fasciolosis known in humans. NDVI images of 1.1 km resolution from the Advanced Very High Resolution Radiometer (AVHRR) sensor on board the National Oceanic and Atmospheric Administration (NOAA) series of environmental satellites appear to provide adequate information for a study area such as that of the Northern Bolivian Altiplano. The predictive value of the remotely sensed map based on NDVI data appears to be better than that from forecast indices based only on climatic data. A close correspondence was observed between real ranges of human fasciolosis prevalence at 13 localities of known prevalence rates and the predicted ranges of fasciolosis prevalence using NDVI maps. However, results based on NDVI map data predicted zones as risk areas where, in fact, field studies have demonstrated the absence of lymnaeid populations during snail surveys, corroborated by the absence of the parasite in humans and livestock. NDVI data maps represent a useful data component in long-term efforts to develop a comprehensive geographical information system control program model that accurately fits real epidemiological and transmission situations of human fasciolosis in high altitude endemic areas in Andean countries.

Assessment of potential soil degradation on agricultural land in the czech republic.

PubMed

Šarapatka, Bořivoj; Bednář, Marek

2015-01-01

Many attempts have been made worldwide to develop methods to identify the areas most threatened by soil degradation. Some soils in afflicted areas may be irreversibly degraded and thus have very little resilience (the ability to restore themselves). For the purpose of assessing the current state of soil degradation in the Czech Republic (CZ) we have developed an overall indicator of land vulnerability to the threat of soil degradation on the basis of individual factors that contribute to soil degradation and are monitored on a long-term basis in various research worksites in the CZ. Individual degradation factors were divided into two groups: chemical and physical degradation. On the basis of principal component analysis, individual degradation factors were assigned a specific weight of influence. With the use of a GIS, the input factors of degradation were combined to create maps of chemical and physical soil degradation, and consequently a map of overall degradation-threatened soils for the CZ, along with a map of areas differentiated according to the prevailing type of degradation. Results showed that, at present, the most important degradation factor in the CZ is water erosion, followed by loss of organic matter. Statistical analysis showed that approximately 51% of agricultural land is moderately threatened in the CZ. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Is Your Neighborhood Designed to Support Physical Activity? A Brief Streetscape Audit Tool.

PubMed

Sallis, James F; Cain, Kelli L; Conway, Terry L; Gavand, Kavita A; Millstein, Rachel A; Geremia, Carrie M; Frank, Lawrence D; Saelens, Brian E; Glanz, Karen; King, Abby C

2015-09-03

Macro level built environment factors (eg, street connectivity, walkability) are correlated with physical activity. Less studied but more modifiable microscale elements of the environment (eg, crosswalks) may also affect physical activity, but short audit measures of microscale elements are needed to promote wider use. This study evaluated the relation of a 15-item neighborhood environment audit tool with a full version of the tool to assess neighborhood design on physical activity in 4 age groups. From the 120-item Microscale Audit of Pedestrian Streetscapes (MAPS) measure of street design, sidewalks, and street crossings, we developed the 15-item version (MAPS-Mini) on the basis of associations with physical activity and attribute modifiability. As a sample of a likely walking route, MAPS-Mini was conducted on a 0.25-mile route from participant residences toward the nearest nonresidential destination for children (n = 758), adolescents (n = 897), younger adults (n = 1,655), and older adults (n = 367). Active transportation and leisure physical activity were measured with age-appropriate surveys, and accelerometers provided objective physical activity measures. Mixed-model regressions were conducted for each MAPS item and a total environment score, adjusted for demographics, participant clustering, and macrolevel walkability. Total scores of MAPS-Mini and the 120-item MAPS correlated at r = .85. Total microscale environment scores were significantly related to active transportation in all age groups. Items related to active transport in 3 age groups were presence of sidewalks, curb cuts, street lights, benches, and buffer between street and sidewalk. The total score was related to leisure physical activity and accelerometer measures only in children. The MAPS-Mini environment measure is short enough to be practical for use by community groups and planning agencies and is a valid substitute for the full version that is 8 times longer.

Construction of a high-density, high-resolution genetic map and its integration with BAC-based physical map in channel catfish

PubMed Central

Li, Yun; Liu, Shikai; Qin, Zhenkui; Waldbieser, Geoff; Wang, Ruijia; Sun, Luyang; Bao, Lisui; Danzmann, Roy G.; Dunham, Rex; Liu, Zhanjiang

2015-01-01

Construction of genetic linkage map is essential for genetic and genomic studies. Recent advances in sequencing and genotyping technologies made it possible to generate high-density and high-resolution genetic linkage maps, especially for the organisms lacking extensive genomic resources. In the present work, we constructed a high-density and high-resolution genetic map for channel catfish with three large resource families genotyped using the catfish 250K single-nucleotide polymorphism (SNP) array. A total of 54,342 SNPs were placed on the linkage map, which to our knowledge had the highest marker density among aquaculture species. The estimated genetic size was 3,505.4 cM with a resolution of 0.22 cM for sex-averaged genetic map. The sex-specific linkage maps spanned a total of 4,495.1 cM in females and 2,593.7 cM in males, presenting a ratio of 1.7 : 1 between female and male in recombination fraction. After integration with the previously established physical map, over 87% of physical map contigs were anchored to the linkage groups that covered a physical length of 867 Mb, accounting for ∼90% of the catfish genome. The integrated map provides a valuable tool for validating and improving the catfish whole-genome assembly and facilitates fine-scale QTL mapping and positional cloning of genes responsible for economically important traits. PMID:25428894

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willard, H.F.; Cremers, F.; Mandel, J.L.

A high-quality integrated genetic and physical map of the X chromosome from telomere to telomere, based primarily on YACs formatted with probes and STSs, is increasingly close to reality. At the Fifth International X Chromosome Workshop, organized by A.M. Poustka and D. Schlessinger in Heidelberg, Germany, April 24--27, 1994, substantial progress was recorded on extension and refinement of the physical map, on the integration of genetic and cytogenetic data, on attempts to use the map to direct gene searches, and on nascent large-scale sequencing efforts. This report summarizes physical and genetic mapping information presented at the workshop and/or published sincemore » the reports of the fourth International X Chromosome Workshop. The principle aim of the workshop was to derive a consensus map of the chromosome, in terms of physical contigs emphasizing the location of genes and microsatellite markers. The resulting map is presented and updates previous versions. This report also updates the list of highly informative microsatellites. The text highlights the working state of the map, the genes known to reside on the X, and the progress toward integration of various types of data.« less

The Effects of Integrating Computer-Based Concept Mapping for Physics Learning in Junior High School

ERIC Educational Resources Information Center

Chang, Cheng-Chieh; Yeh, Ting-Kuang; Shih, Chang-Ming

2016-01-01

It generally is accepted that concept mapping has a noticeable impact on learning. But literatures show the use of concept mapping is not benefit all learners. The present study explored the effects of incorporating computer-based concept mapping in physics instruction. A total of 61 9th-grade students participated in this study. By using a…

Apparatus for Teaching Physics.

ERIC Educational Resources Information Center

Gottlieb, Herbert H., Ed.

1981-01-01

Describes: (1) a variable inductor suitable for an inductance-capacitance bridge consisting of a fixed cylindrical solenoid and a moveable solenoid; (2) long-range apparatus for demonstrating falling bodies; and (3) an apparatus using two lasers to demonstrate ray optics. (SK)

Combining µXANES and µXRD mapping to analyse the heterogeneity in calcium carbonate granules excreted by the earthworm Lumbricus terrestris

PubMed Central

Brinza, Loredana; Schofield, Paul F.; Hodson, Mark E.; Weller, Sophie; Ignatyev, Konstantin; Geraki, Kalotina; Quinn, Paul D.; Mosselmans, J. Frederick W.

2014-01-01

The use of fluorescence full spectral micro-X-ray absorption near-edge structure (µXANES) mapping is becoming more widespread in the hard energy regime. This experimental method using the Ca K-edge combined with micro-X-ray diffraction (µXRD) mapping of the same sample has been enabled on beamline I18 at Diamond Light Source. This combined approach has been used to probe both long- and short-range order in calcium carbonate granules produced by the earthworm Lumbricus terrestris. In granules produced by earthworms cultured in a control artificial soil, calcite and vaterite are observed in the granules. However, granules produced by earthworms cultivated in the same artificial soil amended with 500 p.p.m. Mg also contain an aragonite. The two techniques, µXRD and µXANES, probe different sample volumes but there is good agreement in the phase maps produced. PMID:24365942

Graded levels of FGF protein span the midbrain and can instruct graded induction and repression of neural mapping labels

PubMed Central

Chen, Yao; Mohammadi, Moosa; Flanagan, John G.

2009-01-01

Summary Graded guidance labels are widely used in neural map formation, but it is not well understood which potential strategy leads to their graded expression. In midbrain tectal map development, FGFs can induce an entire midbrain, but their protein distribution is unclear, nor is it known whether they may act instructively to produce graded gene expression. Using a receptor-alkaline phosphatase fusion probe, we find a long-range posterior>anterior FGF protein gradient spanning the midbrain. Heparan sulfate proteoglycan (HSPG) is required for this gradient. To test whether graded FGF concentrations can instruct graded gene expression, a quantitative tectal explant assay was developed. Engrailed-2 and ephrin-As, normally in posterior>anterior tectal gradients, showed graded upregulation. Moreover, EphAs, normally in anterior>posterior countergradients, showed coordinately graded downregulation. These results provide a mechanism to establish graded mapping labels, and more generally provide a developmental strategy to coordinately induce a structure and pattern its cell properties in gradients. PMID:19555646

Quasipolynomial generalization of Lotka-Volterra mappings

NASA Astrophysics Data System (ADS)

Hernández-Bermejo, Benito; Brenig, Léon

2002-07-01

In recent years, it has been shown that Lotka-Volterra mappings constitute a valuable tool from both the theoretical and the applied points of view, with developments in very diverse fields such as physics, population dynamics, chemistry and economy. The purpose of this work is to demonstrate that many of the most important ideas and algebraic methods that constitute the basis of the quasipolynomial formalism (originally conceived for the analysis of ordinary differential equations) can be extended into the mapping domain. The extension of the formalism into the discrete-time context is remarkable as far as the quasipolynomial methodology had never been shown to be applicable beyond the differential case. It will be demonstrated that Lotka-Volterra mappings play a central role in the quasipolynomial formalism for the discrete-time case. Moreover, the extension of the formalism into the discrete-time domain allows a significant generalization of Lotka-Volterra mappings as well as a whole transfer of algebraic methods into the discrete-time context. The result is a novel and more general conceptual framework for the understanding of Lotka-Volterra mappings as well as a new range of possibilities that become open not only for the theoretical analysis of Lotka-Volterra mappings and their generalizations, but also for the development of new applications.

Constructing high-accuracy intermolecular potential energy surface with multi-dimension Morse/Long-Range model

NASA Astrophysics Data System (ADS)

Zhai, Yu; Li, Hui; Le Roy, Robert J.

2018-04-01

Spectroscopically accurate Potential Energy Surfaces (PESs) are fundamental for explaining and making predictions of the infrared and microwave spectra of van der Waals (vdW) complexes, and the model used for the potential energy function is critically important for providing accurate, robust and portable analytical PESs. The Morse/Long-Range (MLR) model has proved to be one of the most general, flexible and accurate one-dimensional (1D) model potentials, as it has physically meaningful parameters, is flexible, smooth and differentiable everywhere, to all orders and extrapolates sensibly at both long and short ranges. The Multi-Dimensional Morse/Long-Range (mdMLR) potential energy model described herein is based on that 1D MLR model, and has proved to be effective and accurate in the potentiology of various types of vdW complexes. In this paper, we review the current status of development of the mdMLR model and its application to vdW complexes. The future of the mdMLR model is also discussed. This review can serve as a tutorial for the construction of an mdMLR PES.

Correlation of physical and genetic maps of human chromosome 16

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sutherland, G.R.

1991-01-01

This project aimed to divide chromosome 16 into approximately 50 intervals of {approximately}2Mb in size by constructing a series of mouse/human somatic cell hybrids each containing a rearranged chromosome 16. Using these hybrids, DNA probes would be regionally mapped by Southern blot or PCR analysis. Preference would be given to mapping probes which demonstrated polymorphisms for which the CEPH panel of families had been typed. This would allow a correlation of the physical and linkage maps of this chromosome. The aims have been substantially achieved. 49 somatic cell hybrids have been constructed which have allowed definition of 46, and potentiallymore » 57, different physical intervals on the chromosome. 164 loci have been fully mapped into these intervals. A correlation of the physical and genetic maps of the chromosome is in an advanced stage of preparation. The somatic cell hybrids constructed have been widely distributed to groups working on chromosome 16 and other genome projects.« less

Correlation of physical and genetic maps of human chromosome 16. Annual progress report, October 1, 1990--July 31, 1991

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sutherland, G.R.

1991-12-31

This project aimed to divide chromosome 16 into approximately 50 intervals of {approximately}2Mb in size by constructing a series of mouse/human somatic cell hybrids each containing a rearranged chromosome 16. Using these hybrids, DNA probes would be regionally mapped by Southern blot or PCR analysis. Preference would be given to mapping probes which demonstrated polymorphisms for which the CEPH panel of families had been typed. This would allow a correlation of the physical and linkage maps of this chromosome. The aims have been substantially achieved. 49 somatic cell hybrids have been constructed which have allowed definition of 46, and potentiallymore » 57, different physical intervals on the chromosome. 164 loci have been fully mapped into these intervals. A correlation of the physical and genetic maps of the chromosome is in an advanced stage of preparation. The somatic cell hybrids constructed have been widely distributed to groups working on chromosome 16 and other genome projects.« less

Nicholas Metropolis Award for Outstanding Doctoral Thesis Work in Computational Physics: Quantum many-body physics of ultracold molecules in optical lattices: models and simulation methods

NASA Astrophysics Data System (ADS)

Wall, Michael

2014-03-01

Experimental progress in generating and manipulating synthetic quantum systems, such as ultracold atoms and molecules in optical lattices, has revolutionized our understanding of quantum many-body phenomena and posed new challenges for modern numerical techniques. Ultracold molecules, in particular, feature long-range dipole-dipole interactions and a complex and selectively accessible internal structure of rotational and hyperfine states, leading to many-body models with long range interactions and many internal degrees of freedom. Additionally, the many-body physics of ultracold molecules is often probed far from equilibrium, and so algorithms which simulate quantum many-body dynamics are essential. Numerical methods which are to have significant impact in the design and understanding of such synthetic quantum materials must be able to adapt to a variety of different interactions, physical degrees of freedom, and out-of-equilibrium dynamical protocols. Matrix product state (MPS)-based methods, such as the density-matrix renormalization group (DMRG), have become the de facto standard for strongly interacting low-dimensional systems. Moreover, the flexibility of MPS-based methods makes them ideally suited both to generic, open source implementation as well as to studies of the quantum many-body dynamics of ultracold molecules. After introducing MPSs and variational algorithms using MPSs generally, I will discuss my own research using MPSs for many-body dynamics of long-range interacting systems. In addition, I will describe two open source implementations of MPS-based algorithms in which I was involved, as well as educational materials designed to help undergraduates and graduates perform research in computational quantum many-body physics using a variety of numerical methods including exact diagonalization and static and dynamic variational MPS methods. Finally, I will mention present research on ultracold molecules in optical lattices, such as the exploration of many-body physics with polyatomic molecules, and the next generation of open source matrix product state codes. This work was performed in the research group of Prof. Lincoln D. Carr.

PRaVDA: High Energy Physics towards proton Computed Tomography

NASA Astrophysics Data System (ADS)

Price, T.; PRaVDA Consortium

2016-07-01

Proton radiotherapy is an increasingly popular modality for treating cancers of the head and neck, and in paediatrics. To maximise the potential of proton radiotherapy it is essential to know the distribution, and more importantly the proton stopping powers, of the body tissues between the proton beam and the tumour. A stopping power map could be measured directly, and uncertainties in the treatment vastly reduce, if the patient was imaged with protons instead of conventional x-rays. Here we outline the application of technologies developed for High Energy Physics to provide clinical-quality proton Computed Tomography, in so reducing range uncertainties and enhancing the treatment of cancer.

Low-Altitude AVIRIS Data for Mapping Land Cover in Yellowstone National Park: Use of Isodata Clustering Techniques

NASA Technical Reports Server (NTRS)

Spruce, Joseph P.

2001-01-01

Northeast Yellowstone National Park (YNP) has a diversity of forest, range, and wetland cover types. Several remote sensing studies have recently been done in this area, including the NASA Earth Observations Commercial Applications Program (EOCAP) hyperspectral project conducted by Yellowstone Ecosystems Studies (YES) on the use of hyperspectral imaging for assessing riparian and in-stream habitats. In 1999, YES and NASA's Commercial Remote Sensing Program Office began collaborative study of this area, assessing the potential of synergistic use of hyperspectral, synthetic aperture radar (SAR), and multiband thermal data for mapping forest, range, and wetland land cover. Since the beginning, a quality 'reference' land cover map has been desired as a tool for developing and validating other land cover maps produced during the project. This paper recounts an effort to produce such a reference land cover map using low-altitude Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data and unsupervised classification techniques. The main objective of this study is to assess ISODATA classification for mapping land cover in Northeast YNP using select bands of low-altitude AVIRIS data. A secondary, more long-term objective is to assess the potential for improving ISODATA-based classification of land cover through use of principal components analysis and minimum noise fraction (MNF) techniques. This paper will primarily report on work regarding the primary research objective. This study focuses on an AVIRIS cube acquired on July 23, 1999, by the confluence of Soda Butte Creek with the Lamar River. Range and wetland habitats dominate the image with forested habitats being a comparatively minor component of the scene. The scene generally tracks from southwest to northeast. Most of the scene is valley bottom with some lower side slopes occurring on the western portion. Elevations within the AVIRIS scene range from approximately 1998 to 2165 m above sea level, based on US Geological Survey (USGS) 30-m digital elevation model (DEM) data. Despain and the National Park Service (NPS) provide additional description of the study area.

Reducing the surface roughness beyond the pulsed-laser-deposition limit.

PubMed

Vasco, E; Polop, C; Sacedón, J L

2009-10-01

Here, we outline the theoretical fundamentals of a promising growth kinetics of films from the vapor phase, in which pulsed fluxes are combined with temperature transients to enable short-range surface relaxations (e.g., species rearrangements) and to inhibit long-range relaxations (atomic exchange between species). A group of physical techniques (fully pulsed thermal and/or laser depositions) based on this kinetics is developed that can be used to prepare films with roughnesses even lower than those obtained with pulsed-laser deposition, which is the physical vapor-phase deposition technique that has produced the flattest films reported so far.

Bounded relative motion under zonal harmonics perturbations

NASA Astrophysics Data System (ADS)

Baresi, Nicola; Scheeres, Daniel J.

2017-04-01

The problem of finding natural bounded relative trajectories between the different units of a distributed space system is of great interest to the astrodynamics community. This is because most popular initialization methods still fail to establish long-term bounded relative motion when gravitational perturbations are involved. Recent numerical searches based on dynamical systems theory and ergodic maps have demonstrated that bounded relative trajectories not only exist but may extend up to hundreds of kilometers, i.e., well beyond the reach of currently available techniques. To remedy this, we introduce a novel approach that relies on neither linearized equations nor mean-to-osculating orbit element mappings. The proposed algorithm applies to rotationally symmetric bodies and is based on a numerical method for computing quasi-periodic invariant tori via stroboscopic maps, including extra constraints to fix the average of the nodal period and RAAN drift between two consecutive equatorial plane crossings of the quasi-periodic solutions. In this way, bounded relative trajectories of arbitrary size can be found with great accuracy as long as these are allowed by the natural dynamics and the physical constraints of the system (e.g., the surface of the gravitational attractor). This holds under any number of zonal harmonics perturbations and for arbitrary time intervals as demonstrated by numerical simulations about an Earth-like planet and the highly oblate primary of the binary asteroid (66391) 1999 KW4.

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern

PubMed Central

De La Vega, Francisco M.; Isaac, Hadar; Collins, Andrew; Scafe, Charles R.; Halldórsson, Bjarni V.; Su, Xiaoping; Lippert, Ross A.; Wang, Yu; Laig-Webster, Marion; Koehler, Ryan T.; Ziegle, Janet S.; Wogan, Lewis T.; Stevens, Junko F.; Leinen, Kyle M.; Olson, Sheri J.; Guegler, Karl J.; You, Xiaoqing; Xu, Lily H.; Hemken, Heinz G.; Kalush, Francis; Itakura, Mitsuo; Zheng, Yi; de Thé, Guy; O'Brien, Stephen J.; Clark, Andrew G.; Istrail, Sorin; Hunkapiller, Michael W.; Spier, Eugene G.; Gilbert, Dennis A.

2005-01-01

The extent and patterns of linkage disequilibrium (LD) determine the feasibility of association studies to map genes that underlie complex traits. Here we present a comparison of the patterns of LD across four major human populations (African-American, Caucasian, Chinese, and Japanese) with a high-resolution single-nucleotide polymorphism (SNP) map covering almost the entire length of chromosomes 6, 21, and 22. We constructed metric LD maps formulated such that the units measure the extent of useful LD for association mapping. LD reaches almost twice as far in chromosome 6 as in chromosomes 21 or 22, in agreement with their differences in recombination rates. By all measures used, out-of-Africa populations showed over a third more LD than African-Americans, highlighting the role of the population's demography in shaping the patterns of LD. Despite those differences, the long-range contour of the LD maps is remarkably similar across the four populations, presumably reflecting common localization of recombination hot spots. Our results have practical implications for the rational design and selection of SNPs for disease association studies. PMID:15781572

Delineation of the North Anatolian Fault Within the Sapanca Lake and Correlation of Seismo-Turbidites With Major Earthquakes

NASA Astrophysics Data System (ADS)

Gulen, L.; Demirbağ, E.; Cagatay, M. N.; Yıldırım, E.; Yalamaz, B.

2015-12-01

Seismic reflection studies have been carried out in the Sapanca Lake to delineate the geometry of the North Anatolian Fault. A total of 28 N-S and 2 E-W trending seismic profiles were obtained. The interpretation of seismic reflection profiles have revealed that the North Anatolian Fault Zone exhibits a pull-apart fault geometry within the Sapanca Lake and the active fault segments have been mapped. A bathymetry map of the Sapanca Lake is also generated and the maximum depth is determined to be 54 m. A systematic study of the sedimentological, physical and geochemical properties of three up to 75.7 cm long water-sediment interface cores located along depth transects ranging from 43 to 5.1.5 m water depth. The cores were analyzed using Geotek Multi Sensor Core Logger (MSCL) for physical properties, laser particle size analyzer for granulometry, TOC Analyzer for Total Organic Organic (TOC) and Total Inorganic carbon (TIC) analysis and Itrax-XRF Core Scanner for elemental analysis and digital X-RAY Radiography. The Sapanca Lake earthquake records are characterized by seismo-turbidites consisting of grey or dark grey coarse to fine sand and silty mud with a sharp basal and transitional upper boundaries. The units commonly show normal size grading with their basal parts showing high density and magnetic susceptibility and enrichment in one or more of elements, such as Si, Ca, Tİ, K, Rb, Zr and Fe, indicative of coarse detrial input. Based on radionuclide and radiocarbon analyses the seismo-turbidites are correlated with the 1999 İzmit and Düzce (Mw=7.4 and 7.2), 1967 Mudurnu (Mw= 6.8), and 1957 Abant (Mw= 7.1) Earthquakes. Additionally a prominent Cs137 peak was found in the Sapanca Lake sediment cores at a depth of 12 cm. indicating that a radioactive fallout occurred in the region as a result of the 1986 Chernobyl Nuclear Power Plant accident in Ukraine.

Mickey Mouse Spotted on Mercury!

NASA Image and Video Library

2012-06-15

NASA image acquired: June 03, 2012 This scene is to the northwest of the recently named crater Magritte, in Mercury's south. The image is not map projected; the larger crater actually sits to the north of the two smaller ones. The shadowing helps define the striking "Mickey Mouse" resemblance, created by the accumulation of craters over Mercury's long geologic history. This image was acquired as part of MDIS's high-incidence-angle base map. The high-incidence-angle base map is a major mapping activity in MESSENGER's extended mission and complements the surface morphology base map of MESSENGER's primary mission that was acquired under generally more moderate incidence angles. High incidence angles, achieved when the Sun is near the horizon, result in long shadows that accentuate the small-scale topography of geologic features. The high-incidence-angle base map is being acquired with an average resolution of 200 meters/pixel. The MESSENGER spacecraft is the first ever to orbit the planet Mercury, and the spacecraft's seven scientific instruments and radio science investigation are unraveling the history and evolution of the Solar System's innermost planet. Visit the Why Mercury? section of this website to learn more about the key science questions that the MESSENGER mission is addressing. During the one-year primary mission, MESSENGER acquired 88,746 images and extensive other data sets. MESSENGER is now in a yearlong extended mission, during which plans call for the acquisition of more than 80,000 additional images to support MESSENGER's science goals. Credit: NASA/Johns Hopkins University Applied Physics Laboratory/Carnegie Institution of Washington NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Enhancing the Characterization of Epistemic Uncertainties in PM2.5 Risk Analyses.

PubMed

Smith, Anne E; Gans, Will

2015-03-01

The Environmental Benefits Mapping and Analysis Program (BenMAP) is a software tool developed by the U.S. Environmental Protection Agency (EPA) that is widely used inside and outside of EPA to produce quantitative estimates of public health risks from fine particulate matter (PM2.5 ). This article discusses the purpose and appropriate role of a risk analysis tool to support risk management deliberations, and evaluates the functions of BenMAP in this context. It highlights the importance in quantitative risk analyses of characterization of epistemic uncertainty, or outright lack of knowledge, about the true risk relationships being quantified. This article describes and quantitatively illustrates sensitivities of PM2.5 risk estimates to several key forms of epistemic uncertainty that pervade those calculations: the risk coefficient, shape of the risk function, and the relative toxicity of individual PM2.5 constituents. It also summarizes findings from a review of U.S.-based epidemiological evidence regarding the PM2.5 risk coefficient for mortality from long-term exposure. That review shows that the set of risk coefficients embedded in BenMAP substantially understates the range in the literature. We conclude that BenMAP would more usefully fulfill its role as a risk analysis support tool if its functions were extended to better enable and prompt its users to characterize the epistemic uncertainties in their risk calculations. This requires expanded automatic sensitivity analysis functions and more recognition of the full range of uncertainty in risk coefficients. © 2014 Society for Risk Analysis.

Arid land monitoring using Landsat albedo difference images

USGS Publications Warehouse

Robinove, Charles J.; Chavez, Pat S.; Gehring, Dale G.; Holmgren, Ralph

1981-01-01

The Landsat albedo, or percentage of incoming radiation reflected from the ground in the wavelength range of 0.5 [mu]m to 1.1 [mu]m, is calculated from an equation using the Landsat digital brightness values and solar irradiance values, and correcting for atmospheric scattering, multispectral scanner calibration, and sun angle. The albedo calculated for each pixel is used to create an albedo image, whose grey scale is proportional to the albedo. Differencing sequential registered images and mapping selected values of the difference is used to create quantitative maps of increased or decreased albedo values of the terrain. All maps and other output products are in black and white rather than color, thus making the method quite economical. Decreases of albedo in arid regions may indicate improvement of land quality; increases may indicate degradation. Tests of the albedo difference mapping method in the Desert Experimental Range in southwestern Utah (a cold desert with little long-term terrain change) for a four-year period show that mapped changes can be correlated with erosion from flash floods, increased or decreased soil moisture, and increases or decreases in the density of desert vegetation, both perennial shrubs and annual plants. All terrain changes identified in this test were related to variations in precipitation. Although further tests of this method in hot deserts showing severe "desertification" are needed, the method is nevertheless recommended for experimental use in monitoring terrain change in other arid and semiarid regions of the world.

Fractal landscapes in biological systems: long-range correlations in DNA and interbeat heart intervals

NASA Technical Reports Server (NTRS)

Stanley, H. E.; Buldyrev, S. V.; Goldberger, A. L.; Hausdorff, J. M.; Havlin, S.; Mietus, J.; Sciortino, F.; Simons, M.

1992-01-01

Here we discuss recent advances in applying ideas of fractals and disordered systems to two topics of biological interest, both topics having common the appearance of scale-free phenomena, i.e., correlations that have no characteristic length scale, typically exhibited by physical systems near a critical point and dynamical systems far from equilibrium. (i) DNA nucleotide sequences have traditionally been analyzed using models which incorporate the possibility of short-range nucleotide correlations. We found, instead, a remarkably long-range power law correlation. We found such long-range correlations in intron-containing genes and in non-transcribed regulatory DNA sequences as well as intragenomic DNA, but not in cDNA sequences or intron-less genes. We also found that the myosin heavy chain family gene evolution increases the fractal complexity of the DNA landscapes, consistent with the intron-late hypothesis of gene evolution. (ii) The healthy heartbeat is traditionally thought to be regulated according to the classical principle of homeostasis, whereby physiologic systems operate to reduce variability and achieve an equilibrium-like state. We found, however, that under normal conditions, beat-to-beat fluctuations in heart rate display long-range power law correlations.

Decoding fMRI events in sensorimotor motor network using sparse paradigm free mapping and activation likelihood estimates.

PubMed

Tan, Francisca M; Caballero-Gaudes, César; Mullinger, Karen J; Cho, Siu-Yeung; Zhang, Yaping; Dryden, Ian L; Francis, Susan T; Gowland, Penny A

2017-11-01

Most functional MRI (fMRI) studies map task-driven brain activity using a block or event-related paradigm. Sparse paradigm free mapping (SPFM) can detect the onset and spatial distribution of BOLD events in the brain without prior timing information, but relating the detected events to brain function remains a challenge. In this study, we developed a decoding method for SPFM using a coordinate-based meta-analysis method of activation likelihood estimation (ALE). We defined meta-maps of statistically significant ALE values that correspond to types of events and calculated a summation overlap between the normalized meta-maps and SPFM maps. As a proof of concept, this framework was applied to relate SPFM-detected events in the sensorimotor network (SMN) to six motor functions (left/right fingers, left/right toes, swallowing, and eye blinks). We validated the framework using simultaneous electromyography (EMG)-fMRI experiments and motor tasks with short and long duration, and random interstimulus interval. The decoding scores were considerably lower for eye movements relative to other movement types tested. The average successful rate for short and long motor events were 77 ± 13% and 74 ± 16%, respectively, excluding eye movements. We found good agreement between the decoding results and EMG for most events and subjects, with a range in sensitivity between 55% and 100%, excluding eye movements. The proposed method was then used to classify the movement types of spontaneous single-trial events in the SMN during resting state, which produced an average successful rate of 22 ± 12%. Finally, this article discusses methodological implications and improvements to increase the decoding performance. Hum Brain Mapp 38:5778-5794, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Decoding fMRI events in Sensorimotor Motor Network using Sparse Paradigm Free Mapping and Activation Likelihood Estimates

PubMed Central

Tan, Francisca M.; Caballero-Gaudes, César; Mullinger, Karen J.; Cho, Siu-Yeung; Zhang, Yaping; Dryden, Ian L.; Francis, Susan T.; Gowland, Penny A.

2017-01-01

Most fMRI studies map task-driven brain activity using a block or event-related paradigm. Sparse Paradigm Free Mapping (SPFM) can detect the onset and spatial distribution of BOLD events in the brain without prior timing information; but relating the detected events to brain function remains a challenge. In this study, we developed a decoding method for SPFM using a coordinate-based meta-analysis method of Activation Likelihood Estimation (ALE). We defined meta-maps of statistically significant ALE values that correspond to types of events and calculated a summation overlap between the normalized meta-maps and SPFM maps. As a proof of concept, this framework was applied to relate SPFM-detected events in the Sensorimotor Network (SMN) to six motor function (left/right fingers, left/right toes, swallowing and eye blinks). We validated the framework using simultaneous Electromyography-fMRI experiments and motor tasks with short and long duration, and random inter-stimulus interval. The decoding scores were considerably lower for eye movements relative to other movement types tested. The average successful rate for short and long motor events was 77 ± 13% and 74 ± 16% respectively, excluding eye movements. We found good agreement between the decoding results and EMG for most events and subjects, with a range in sensitivity between 55 and 100%, excluding eye movements. The proposed method was then used to classify the movement types of spontaneous single-trial events in the SMN during resting state, which produced an average successful rate of 22 ± 12%. Finally, this paper discusses methodological implications and improvements to increase the decoding performance. PMID:28815863

Science-Grade Observing Systems as Process Observatories: Mapping and Understanding Nonlinearity and Multiscale Memory with Models and Observations

NASA Astrophysics Data System (ADS)

Barros, A. P.; Wilson, A. M.; Miller, D. K.; Tao, J.; Genereux, D. P.; Prat, O.; Petersen, W. A.; Brunsell, N. A.; Petters, M. D.; Duan, Y.

2015-12-01

Using the planet as a study domain and collecting observations over unprecedented ranges of spatial and temporal scales, NASA's EOS (Earth Observing System) program was an agent of transformational change in Earth Sciences over the last thirty years. The remarkable space-time organization and variability of atmospheric and terrestrial moist processes that emerged from the analysis of comprehensive satellite observations provided much impetus to expand the scope of land-atmosphere interaction studies in Hydrology and Hydrometeorology. Consequently, input and output terms in the mass and energy balance equations evolved from being treated as fluxes that can be used as boundary conditions, or forcing, to being viewed as dynamic processes of a coupled system interacting at multiple scales. Measurements of states or fluxes are most useful if together they map, reveal and/or constrain the underlying physical processes and their interactions. This can only be accomplished through an integrated observing system designed to capture the coupled physics, including nonlinear feedbacks and tipping points. Here, we first review and synthesize lessons learned from hydrometeorology studies in the Southern Appalachians and in the Southern Great Plains using both ground-based and satellite observations, physical models and data-assimilation systems. We will specifically focus on mapping and understanding nonlinearity and multiscale memory of rainfall-runoff processes in mountainous regions. It will be shown that beyond technical rigor, variety, quantity and duration of measurements, the utility of observing systems is determined by their interpretive value in the context of physical models to describe the linkages among different observations. Second, we propose a framework for designing science-grade and science-minded process-oriented integrated observing and modeling platforms for hydrometeorological studies.

Pediatric Sport-Related Concussion Education: Effectiveness and Long-Term Retention of the Head Safety in Youth Sports (HSYS) Program for Youth Athletes Aged 11-16

ERIC Educational Resources Information Center

Elliott, Ross-Jordon S.; Batiste, Oliver; Hitto, Imran; Walker, Bridget; Leary, Linda D.

2016-01-01

Objective: The goals of this study are to evaluate the effectiveness of the curriculum for youth athletes and determine long-term retention in those who have previously participated. Design: Prospective cohort study. Setting: Middle schools. Participants: 887 male and female sixth- through eighth-grade Physical Education students, ranging from…

Long-Range Technological Impact on Computer-Aided Product Development at DMA (Defense Mapping Agency).

DTIC Science & Technology

1986-07-01

maintainability, enhanceability, portability, flexibility, reusability of components, expected market or production life span, upward compatibility, integration...cost) but, most often, they involve global marketing and production objectives. A high life- cycle cost may be accepted in exchange for some other...ease of integration. More importantly, these results could be interpreted as suggesting the need to use a mixed approach where one uses a subset of

The large area high resolution gamma ray astrophysics facility - HR-GRAF

NASA Astrophysics Data System (ADS)

Fenyves, E. J.; Chaney, R. C.; Hoffman, J. H.; Cline, D. B.; Atac, M.; Park, J.; White, S. R.; Zych, A. D.; Tumer, Q. T.; Hughes, E. B.

1990-03-01

The long-term program is described in terms of its equipment, scientific objectives, and long-range scientific studies. A prototype of a space-based large-area high-resolution gamma-ray facility (HR-GRAF) is being developed to examine pointlike and diffuse gamma-ray sources in the range 1 MeV-100 GeV. The instrument for the facility is proposed to have high angular and energy resolution and very high sensitivity to permit the study of the proposed objects. The primary research targets include the mapping of galactic gamma radiation, observing the angular variations of diffuse gamma rays, and studying the Galactic center with particular emphasis on the hypothetical black hole. Also included in the research plans are obtaining data on gamma-ray bursters, investigating the transmission of gamma rays from cold dark matter, and studying nuclear gamma-ray lines.

A high-resolution map of the three-dimensional chromatin interactome in human cells.

PubMed

Jin, Fulai; Li, Yan; Dixon, Jesse R; Selvaraj, Siddarth; Ye, Zhen; Lee, Ah Young; Yen, Chia-An; Schmitt, Anthony D; Espinoza, Celso A; Ren, Bing

2013-11-14

A large number of cis-regulatory sequences have been annotated in the human genome, but defining their target genes remains a challenge. One strategy is to identify the long-range looping interactions at these elements with the use of chromosome conformation capture (3C)-based techniques. However, previous studies lack either the resolution or coverage to permit a whole-genome, unbiased view of chromatin interactions. Here we report a comprehensive chromatin interaction map generated in human fibroblasts using a genome-wide 3C analysis method (Hi-C). We determined over one million long-range chromatin interactions at 5-10-kb resolution, and uncovered general principles of chromatin organization at different types of genomic features. We also characterized the dynamics of promoter-enhancer contacts after TNF-α signalling in these cells. Unexpectedly, we found that TNF-α-responsive enhancers are already in contact with their target promoters before signalling. Such pre-existing chromatin looping, which also exists in other cell types with different extracellular signalling, is a strong predictor of gene induction. Our observations suggest that the three-dimensional chromatin landscape, once established in a particular cell type, is relatively stable and could influence the selection or activation of target genes by a ubiquitous transcription activator in a cell-specific manner.

White paper on nuclear astrophysics and low-energy nuclear physics, Part 2: Low-energy nuclear physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carlson, Joe; Carpenter, Michael P.; Casten, Richard

In preparation for the 2015 NSAC Long Range Plan (LRP), the DNP town meetings on Nuclear Astrophysics and Low-Energy Nuclear Physics were held at the Mitchell Center on the campus of Texas A&M University August 21–23, 2014. Participants met in a number of topic-oriented working groups to discuss progress since the 2007 LRP, compelling science opportunities, and the resources needed to advance them. These considerations were used to determine priorities for the next five to ten years. In addition, approximately 270 participants attended the meetings, coming from US national laboratories, a wide range of US universities and other research institutionsmore » and universities abroad.« less

White paper on nuclear astrophysics and low-energy nuclear physics, Part 2: Low-energy nuclear physics

DOE PAGES

Carlson, Joe; Carpenter, Michael P.; Casten, Richard; ...

2017-01-04

In preparation for the 2015 NSAC Long Range Plan (LRP), the DNP town meetings on Nuclear Astrophysics and Low-Energy Nuclear Physics were held at the Mitchell Center on the campus of Texas A&M University August 21–23, 2014. Participants met in a number of topic-oriented working groups to discuss progress since the 2007 LRP, compelling science opportunities, and the resources needed to advance them. These considerations were used to determine priorities for the next five to ten years. In addition, approximately 270 participants attended the meetings, coming from US national laboratories, a wide range of US universities and other research institutionsmore » and universities abroad.« less

Annual regression-based estimates of evapotranspiration for the contiguous United States based on climate, remote sensing, and stream gage data

NASA Astrophysics Data System (ADS)

Reitz, M. D.; Sanford, W. E.; Senay, G. B.; Cazenas, J.

2015-12-01

Evapotranspiration (ET) is a key quantity in the hydrologic cycle, accounting for ~70% of precipitation across the contiguous United States (CONUS). However, it is a challenge to estimate, due to difficulty in making direct measurements and gaps in our theoretical understanding. Here we present a new data-driven, ~1km2 resolution map of long-term average actual evapotranspiration rates across the CONUS. The new ET map is a function of the USGS Landsat-derived National Land Cover Database (NLCD), precipitation, temperature, and daily average temperature range (from the PRISM climate dataset), and is calibrated to long-term water balance data from 679 watersheds. It is unique from previously presented ET maps in that (1) it was co-developed with estimates of runoff and recharge; (2) the regression equation was chosen from among many tested, previously published and newly proposed functional forms for its optimal description of long-term water balance ET data; (3) it has values over open-water areas that are derived from separate mass-transfer and humidity equations; and (4) the data include additional precipitation representing amounts converted from 2005 USGS water-use census irrigation data. The regression equation is calibrated using data from 2000-2013, but can also be applied to individual years with their corresponding input datasets. Comparisons among this new map, the more detailed remote-sensing-based estimates of MOD16 and SSEBop, and AmeriFlux ET tower measurements shows encouraging consistency, and indicates that the empirical ET estimate approach presented here produces closer agreement with independent flux tower data for annual average actual ET than other more complex remote sensing approaches.

A Low Cost Sensors Approach for Accurate Vehicle Localization and Autonomous Driving Application.

PubMed

Vivacqua, Rafael; Vassallo, Raquel; Martins, Felipe

2017-10-16

Autonomous driving in public roads requires precise localization within the range of few centimeters. Even the best current precise localization system based on the Global Navigation Satellite System (GNSS) can not always reach this level of precision, especially in an urban environment, where the signal is disturbed by surrounding buildings and artifacts. Laser range finder and stereo vision have been successfully used for obstacle detection, mapping and localization to solve the autonomous driving problem. Unfortunately, Light Detection and Ranging (LIDARs) are very expensive sensors and stereo vision requires powerful dedicated hardware to process the cameras information. In this context, this article presents a low-cost architecture of sensors and data fusion algorithm capable of autonomous driving in narrow two-way roads. Our approach exploits a combination of a short-range visual lane marking detector and a dead reckoning system to build a long and precise perception of the lane markings in the vehicle's backwards. This information is used to localize the vehicle in a map, that also contains the reference trajectory for autonomous driving. Experimental results show the successful application of the proposed system on a real autonomous driving situation.

A Low Cost Sensors Approach for Accurate Vehicle Localization and Autonomous Driving Application

PubMed Central

Vassallo, Raquel

2017-01-01

Autonomous driving in public roads requires precise localization within the range of few centimeters. Even the best current precise localization system based on the Global Navigation Satellite System (GNSS) can not always reach this level of precision, especially in an urban environment, where the signal is disturbed by surrounding buildings and artifacts. Laser range finder and stereo vision have been successfully used for obstacle detection, mapping and localization to solve the autonomous driving problem. Unfortunately, Light Detection and Ranging (LIDARs) are very expensive sensors and stereo vision requires powerful dedicated hardware to process the cameras information. In this context, this article presents a low-cost architecture of sensors and data fusion algorithm capable of autonomous driving in narrow two-way roads. Our approach exploits a combination of a short-range visual lane marking detector and a dead reckoning system to build a long and precise perception of the lane markings in the vehicle’s backwards. This information is used to localize the vehicle in a map, that also contains the reference trajectory for autonomous driving. Experimental results show the successful application of the proposed system on a real autonomous driving situation. PMID:29035334

Study of the application of hydrogen fuel to long-range subsonic transport aircraft. Volume 1: Summary

NASA Technical Reports Server (NTRS)

Brewer, G. D.; Morris, R. E.; Lange, R. H.; Moore, J. W.

1975-01-01

The feasibility of using liquid hydrogen as fuel in advanced designs of long range, subsonic transport aircraft is assessed. Both passenger and cargo type aircraft are investigated. Comparisons of physical, performance, and economic parameters of the LH2 fueled designs with conventionally fueled aircraft are presented. Design studies are conducted to determine appropriate characteristics for the hydrogen related systems required on board the aircraft. These studies included consideration of material, structural, and thermodynamic requirements of the cryogenic fuel tanks and fuel systems with the structural support and thermal protection systems.

White paper on nuclear astrophysics and low energy nuclear physics Part 1: Nuclear astrophysics

DOE PAGES

Arcones, Almudena; Bardayan, Dan W.; Beers, Timothy C.; ...

2016-12-28

This white paper informs the nuclear astrophysics community and funding agencies about the scientific directions and priorities of the field and provides input from this community for the 2015 Nuclear Science Long Range Plan. It also summarizes the outcome of the nuclear astrophysics town meeting that was held on August 21–23, 2014 in College Station at the campus of Texas A&M University in preparation of the NSAC Nuclear Science Long Range Plan. It also reflects the outcome of an earlier town meeting of the nuclear astrophysics community organized by the Joint Institute for Nuclear Astrophysics (JINA) on October 9–10, 2012more » Detroit, Michigan, with the purpose of developing a vision for nuclear astrophysics in light of the recent NRC decadal surveys in nuclear physics (NP2010) and astronomy (ASTRO2010). Our white paper is informed informed by the town meeting of the Association of Research at University Nuclear Accelerators (ARUNA) that took place at the University of Notre Dame on June 12–13, 2014. In summary we find that nuclear astrophysics is a modern and vibrant field addressing fundamental science questions at the intersection of nuclear physics and astrophysics. These questions relate to the origin of the elements, the nuclear engines that drive life and death of stars, and the properties of dense matter. A broad range of nuclear accelerator facilities, astronomical observatories, theory efforts, and computational capabilities are needed. Answers to long standing key questions are well within reach in the coming decade because of the developments outlined in this white paper.« less

White paper on nuclear astrophysics and low energy nuclear physics Part 1: Nuclear astrophysics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arcones, Almudena; Bardayan, Dan W.; Beers, Timothy C.

This white paper informs the nuclear astrophysics community and funding agencies about the scientific directions and priorities of the field and provides input from this community for the 2015 Nuclear Science Long Range Plan. It also summarizes the outcome of the nuclear astrophysics town meeting that was held on August 21–23, 2014 in College Station at the campus of Texas A&M University in preparation of the NSAC Nuclear Science Long Range Plan. It also reflects the outcome of an earlier town meeting of the nuclear astrophysics community organized by the Joint Institute for Nuclear Astrophysics (JINA) on October 9–10, 2012more » Detroit, Michigan, with the purpose of developing a vision for nuclear astrophysics in light of the recent NRC decadal surveys in nuclear physics (NP2010) and astronomy (ASTRO2010). Our white paper is informed informed by the town meeting of the Association of Research at University Nuclear Accelerators (ARUNA) that took place at the University of Notre Dame on June 12–13, 2014. In summary we find that nuclear astrophysics is a modern and vibrant field addressing fundamental science questions at the intersection of nuclear physics and astrophysics. These questions relate to the origin of the elements, the nuclear engines that drive life and death of stars, and the properties of dense matter. A broad range of nuclear accelerator facilities, astronomical observatories, theory efforts, and computational capabilities are needed. Answers to long standing key questions are well within reach in the coming decade because of the developments outlined in this white paper.« less

White Paper on Nuclear Astrophysics and Low Energy Nuclear Physics - Part 1. Nuclear Astrophysics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arcones, Almudena; Escher, Jutta E.; Others, M.

This white paper informs the nuclear astrophysics community and funding agencies about the scientific directions and priorities of the field and provides input from this community for the 2015 Nuclear Science Long Range Plan. It summarizes the outcome of the nuclear astrophysics town meeting that was held on August 21 - 23, 2014 in College Station at the campus of Texas A&M University in preparation of the NSAC Nuclear Science Long Range Plan. It also reflects the outcome of an earlier town meeting of the nuclear astrophysics community organized by the Joint Institute for Nuclear Astrophysics (JINA) on October 9more » - 10, 2012 Detroit, Michigan, with the purpose of developing a vision for nuclear astrophysics in light of the recent NRC decadal surveys in nuclear physics (NP2010) and astronomy (ASTRO2010). The white paper is furthermore informed by the town meeting of the Association of Research at University Nuclear Accelerators (ARUNA) that took place at the University of Notre Dame on June 12 - 13, 2014. In summary we find that nuclear astrophysics is a modern and vibrant field addressing fundamental science questions at the intersection of nuclear physics and astrophysics. These questions relate to the origin of the elements, the nuclear engines that drive life and death of stars, and the properties of dense matter. A broad range of nuclear accelerator facilities, astronomical observatories, theory efforts, and computational capabilities are needed. With the developments outlined in this white paper, answers to long-standing key questions are well within reach in the coming decade.« less

White paper on nuclear astrophysics and low energy nuclear physics Part 1: Nuclear astrophysics

NASA Astrophysics Data System (ADS)

Arcones, Almudena; Bardayan, Dan W.; Beers, Timothy C.; Bernstein, Lee A.; Blackmon, Jeffrey C.; Messer, Bronson; Brown, B. Alex; Brown, Edward F.; Brune, Carl R.; Champagne, Art E.; Chieffi, Alessandro; Couture, Aaron J.; Danielewicz, Pawel; Diehl, Roland; El-Eid, Mounib; Escher, Jutta E.; Fields, Brian D.; Fröhlich, Carla; Herwig, Falk; Hix, William Raphael; Iliadis, Christian; Lynch, William G.; McLaughlin, Gail C.; Meyer, Bradley S.; Mezzacappa, Anthony; Nunes, Filomena; O'Shea, Brian W.; Prakash, Madappa; Pritychenko, Boris; Reddy, Sanjay; Rehm, Ernst; Rogachev, Grigory; Rutledge, Robert E.; Schatz, Hendrik; Smith, Michael S.; Stairs, Ingrid H.; Steiner, Andrew W.; Strohmayer, Tod E.; Timmes, F. X.; Townsley, Dean M.; Wiescher, Michael; Zegers, Remco G. T.; Zingale, Michael

2017-05-01

This white paper informs the nuclear astrophysics community and funding agencies about the scientific directions and priorities of the field and provides input from this community for the 2015 Nuclear Science Long Range Plan. It summarizes the outcome of the nuclear astrophysics town meeting that was held on August 21-23, 2014 in College Station at the campus of Texas A&M University in preparation of the NSAC Nuclear Science Long Range Plan. It also reflects the outcome of an earlier town meeting of the nuclear astrophysics community organized by the Joint Institute for Nuclear Astrophysics (JINA) on October 9-10, 2012 Detroit, Michigan, with the purpose of developing a vision for nuclear astrophysics in light of the recent NRC decadal surveys in nuclear physics (NP2010) and astronomy (ASTRO2010). The white paper is furthermore informed by the town meeting of the Association of Research at University Nuclear Accelerators (ARUNA) that took place at the University of Notre Dame on June 12-13, 2014. In summary we find that nuclear astrophysics is a modern and vibrant field addressing fundamental science questions at the intersection of nuclear physics and astrophysics. These questions relate to the origin of the elements, the nuclear engines that drive life and death of stars, and the properties of dense matter. A broad range of nuclear accelerator facilities, astronomical observatories, theory efforts, and computational capabilities are needed. With the developments outlined in this white paper, answers to long standing key questions are well within reach in the coming decade.

An isolated long thoracic nerve injury in a Navy Airman.

PubMed

Oakes, Michael J; Sherwood, Daniel L

2004-09-01

A palsy of the long thoracic nerve of Bell is a cause of scapular winging that has been reported after trauma, surgery, infection, electrocution, chiropractic manipulation, exposure to toxins, and various sports-related injuries that include tennis, hockey, bowling, soccer, gymnastics, and weight lifting. Scapular winging can result from repetitive or sudden external biomechanical forces that may either exert compression or place extraordinary traction in the distribution of the long thoracic nerve. We describe an active duty Navy Airman who developed scapular winging secondary to traction to the long thoracic nerve injury while working on the flight line. A thorough history and physical is essential in determining the mechanism of injury. Treatment should initially include refraining from strenuous use of the involved extremity, avoidance of the precipitating activity, and physical therapy to focus on maintaining range of motion and strengthening associated muscles, with most cases resolving within 9 months.

Physical stability and resistance to peroxidation of a range of liquid-fill hard gelatin capsule products on extreme long-term storage.

PubMed

Bowtle, William; Kanyowa, Lionel; Mackenzie, Mark; Higgins, Paul

2011-06-01

The industrial take-up of liquid-fill hard capsule technology is limited in part by lack of published long-term physical and chemical stability data which demonstrate the robustness of the system. To assess the effects of extreme long-term storage on liquid-fill capsule product quality and integrity, with respect to both the capsules per se and a standard blister-pack type (foil-film blister). Fourteen sets of stored peroxidation-sensitive liquid-fill hard gelatin capsule product samples, originating ~20 years from the current study, were examined with respect to physical and selected chemical properties, together with microbiological evaluation. All sets retained physical integrity of capsules and blister-packs. Capsules were free of leaks, gelatin cross-linking, and microbiological growth. Eight samples met a limit (anisidine value, 20) commonly used as an index of peroxidation for lipid-based products with shelf lives of 2-3 years. Foil-film blister-packs using PVC or PVC-PVdC as the thermoforming film were well-suited packaging components for the liquid-fill capsule format. The study confirms the long-term physical robustness of the liquid-fill hard capsule format, together with its manufacturing and banding processes. It also indicates that various peroxidation-sensitive products using the capsule format may be maintained satisfactorily over very prolonged storage periods.

Making Riverscapes Real (Invited)

NASA Astrophysics Data System (ADS)

Marcus, A.; Carbonneau, P.; Fonstad, M. A.; Walther, S. C.

2009-12-01

The structure and function of rivers have long been characterized either by: (1) qualitative models such as the River Continuum Concept or Serial Discontinuity Concept which paint broad descriptive portraits of how river habitats and communities vary, or (2) quantitative models, such as Downstream Hydraulic Geometry, which rely on a limited number of measurements spread widely throughout a river basin. In contrast, Fausch et al. (2002) proposed applying landscape ecology methods to rivers to create “riverscapes.” Application of the riverscape concept requires information on the spatial distribution of organism-scale habitats throughout entire river systems. In practical terms, this means that researchers must replicate maps of local habitat continuously throughout entire rivers to document and predict total habitat availability, structure, and function. Likewise, information on time-dependent variations in these river habitats is necessary. Given these requirements, it is not surprising that the riverscape approach has largely remained a conceptual framework with limited practical application. Recent advances in remote sensing and desktop computing, however, make the riverscape concept more achievable from a mapping perspective. Remote sensing methods now enable sub-meter measurements of depth, water surface slope, grain size, biotypes, algae, and plants, as well as estimation of derived parameters such as velocity and stream power. Although significant obstacles remain to basin-extent sub-meter mapping of physical habitat, recent advances are overcoming these obstacles and allowing the riverscape concept to be put into use by different agencies - at least from a physical habitat perspective. More problematic to the riverscape approach, however, are two major issues that cannot be solved with technical solutions. First is the difficulty in acquiring maps of fauna, whether they be macroinvertebrates, fish, or microorganisms, at scales and spatial extents comparable to physical habitat data. Given that funding will not be available in most rivers to map organism distributions across all scales and locations, modeling of organism distributions over space and time will have to be an integral part of making riverscapes “real.” A second challenge is that existing quantitative and qualitative models do not capture or explain the multiple scales of spatial variability shown by continuous, high resolution maps of riverscapes. Riverscapes thus challenge our existing understanding of how rivers structure themselves and will force development of new paradigms. Absent these new paradigms, riverscape maps provide an information overload that scientists and managers have trouble conceptualizing and using. This paper presents examples of riverscape mapping from around the world, demonstrates ways in which the maps can be used, and discusses the fundamental ways in which multiscalar, basin-extent riverscapes challenge our present understanding of river structure and function.

An Accurate Co-registration Method for Airborne Repeat-pass InSAR

NASA Astrophysics Data System (ADS)

Dong, X. T.; Zhao, Y. H.; Yue, X. J.; Han, C. M.

2017-10-01

Interferometric Synthetic Aperture Radar (InSAR) technology plays a significant role in topographic mapping and surface deformation detection. Comparing with spaceborne repeat-pass InSAR, airborne repeat-pass InSAR solves the problems of long revisit time and low-resolution images. Due to the advantages of flexible, accurate, and fast obtaining abundant information, airborne repeat-pass InSAR is significant in deformation monitoring of shallow ground. In order to getting precise ground elevation information and interferometric coherence of deformation monitoring from master and slave images, accurate co-registration must be promised. Because of side looking, repeat observing path and long baseline, there are very different initial slant ranges and flight heights between repeat flight paths. The differences of initial slant ranges and flight height lead to the pixels, located identical coordinates on master and slave images, correspond to different size of ground resolution cells. The mismatching phenomenon performs very obvious on the long slant range parts of master image and slave image. In order to resolving the different sizes of pixels and getting accurate co-registration results, a new method is proposed based on Range-Doppler (RD) imaging model. VV-Polarization C-band airborne repeat-pass InSAR images were used in experiment. The experiment result shows that the proposed method leads to superior co-registration accuracy.

Feasibility of Using Remotely Sensed Data to Aid in Long-Term Monitoring of Biodiversity

NASA Technical Reports Server (NTRS)

Carroll, Mark L.; Brown, Molly E.; Elders, Akiko; Johnson, Kiersten

2014-01-01

Remote sensing is defined as making observations of an event or phenomena without physically sampling it. Typically this is done with instruments and sensors mounted on anything from poles extended over a cornfield,to airplanes,to satellites orbiting the Earth The sensors have characteristics that allow them to detect and record information regarding the emission and reflectance of electromagnetic energy from a surface or object. That information can then be represented visually on a screen or paper map or used in data analysis to inform decision-making.

Updated tops file for Cretaceous and lower Tertiary units, Piceance Basin, northwest Colorado

USGS Publications Warehouse

Johnson, Ronald C.; Dietrich, John D.; Mercier, Tracey J.

2015-08-04

Each entry for the base of the Long Point Bed was obtained at a location where the mapped Long Point Bed intersects a contour line on the published maps. Precision of each elevation is therefore dependent on the precision of the maps and the placement of the mapped contact by the authors.

Multiplatform sampling (ship, aircraft, and satellite) of a Gulf Stream warm core ring

NASA Technical Reports Server (NTRS)

Smith, Raymond C.; Brown, Otis B.; Hoge, Frank E.; Baker, Karen S.; Evans, Robert H.

1987-01-01

The purpose of this paper is to demonstrate the ability to meet the need to measure distributions of physical and biological properties of the ocean over large areas synoptically and over long time periods by means of remote sensing utilizing contemporaneous buoy, ship, aircraft, and satellite (i.e., multiplatform) sampling strategies. A mapping of sea surface temperature and chlorophyll fields in a Gulf Stream warm core ring using the multiplatform approach is described. Sampling capabilities of each sensing system are discussed as background for the data collected by means of these three dissimilar methods. Commensurate space/time sample sets from each sensing system are compared, and their relative accuracies in space and time are determined. The three-dimensional composite maps derived from the data set provide a synoptic perspective unobtainable from single platforms alone.

Singular dynamics and emergence of nonlocality in long-range quantum models

NASA Astrophysics Data System (ADS)

Lepori, L.; Trombettoni, A.; Vodola, D.

2017-03-01

We discuss how nonlocality originates in long-range quantum systems and how it affects their dynamics at and out of equilibrium. We focus in particular on the Kitaev chains with long-range pairings and on the quantum Ising chain with long-range antiferromagnetic coupling (both having a power-law decay with exponent α). By studying the dynamic correlation functions, we find that for every finite α two different behaviours can be identified, one typical of short-range systems and the other connected with locality violation. The latter behaviour is shown related also with the known power-law decay tails previously observed in the static correlation functions, and originated by modes—having in general energies far from the minima of the spectrum—where particular singularities develop as a consequence of the long-rangedness of the system. We refer to these modes as to ‘singular’ modes, and as to ‘singular dynamics’ to their dynamics. For the Kitaev model they are manifest, at finite α, in derivatives of the quasiparticle energy, the order of the derivatives at which the singularity occurs is increasing with α. The features of the singular modes and their physical consequences are clarified by studying an effective theory for them and by a critical comparison of the results from this theory with the lattice ones. Moreover, a numerical study of the effects of the singular modes on the time evolution after various types of global quenches is performed. We finally present and discuss the presence of singular modes and their consequences in interacting long-range systems by investigating in the long-range Ising quantum chain, both in the deep paramagnetic regime and at criticality, where they also play a central role for the breakdown of conformal invariance.

Putting plant resistance traits on the map: a test of the idea that plants are better defended at lower latitudes.

PubMed

Moles, Angela T; Wallis, Ian R; Foley, William J; Warton, David I; Stegen, James C; Bisigato, Alejandro J; Cella-Pizarro, Lucrecia; Clark, Connie J; Cohen, Philippe S; Cornwell, William K; Edwards, Will; Ejrnaes, Rasmus; Gonzales-Ojeda, Therany; Graae, Bente J; Hay, Gregory; Lumbwe, Fainess C; Magaña-Rodríguez, Benjamín; Moore, Ben D; Peri, Pablo L; Poulsen, John R; Veldtman, Ruan; von Zeipel, Hugo; Andrew, Nigel R; Boulter, Sarah L; Borer, Elizabeth T; Campón, Florencia Fernández; Coll, Moshe; Farji-Brener, Alejandro G; De Gabriel, Jane; Jurado, Enrique; Kyhn, Line A; Low, Bill; Mulder, Christa P H; Reardon-Smith, Kathryn; Rodríguez-Velázquez, Jorge; Seabloom, Eric W; Vesk, Peter A; van Cauter, An; Waldram, Matthew S; Zheng, Zheng; Blendinger, Pedro G; Enquist, Brian J; Facelli, Jose M; Knight, Tiffany; Majer, Jonathan D; Martínez-Ramos, Miguel; McQuillan, Peter; Prior, Lynda D

2011-08-01

• It has long been believed that plant species from the tropics have higher levels of traits associated with resistance to herbivores than do species from higher latitudes. A meta-analysis recently showed that the published literature does not support this theory. However, the idea has never been tested using data gathered with consistent methods from a wide range of latitudes. • We quantified the relationship between latitude and a broad range of chemical and physical traits across 301 species from 75 sites world-wide. • Six putative resistance traits, including tannins, the concentration of lipids (an indicator of oils, waxes and resins), and leaf toughness were greater in high-latitude species. Six traits, including cyanide production and the presence of spines, were unrelated to latitude. Only ash content (an indicator of inorganic substances such as calcium oxalates and phytoliths) and the properties of species with delayed greening were higher in the tropics. • Our results do not support the hypothesis that tropical plants have higher levels of resistance traits than do plants from higher latitudes. If anything, plants have higher resistance toward the poles. The greater resistance traits of high-latitude species might be explained by the greater cost of losing a given amount of leaf tissue in low-productivity environments. © 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.

Molecular dynamics simulation of polymer electrolytes based on poly(ethylene oxide) and ionic liquids. I. Structural properties.

PubMed

Costa, Luciano T; Ribeiro, Mauro C C

2006-05-14

Molecular dynamics (MD) simulations have been performed for prototype models of polymer electrolytes in which the salt is an ionic liquid based on 1-alkyl-3-methylimidazolium cations and the polymer is poly(ethylene oxide), PEO. The MD simulations were performed by combining the previously proposed models for pure ionic liquids and polymer electrolytes containing simple inorganic ions. A systematic investigation of ionic liquid concentration, temperature, and the 1-alkyl- chain length, [1,3-dimethylimidazolium]PF6, and [1-butyl-3-methylimidazolium]PF6, effects on resulting equilibrium structure is provided. It is shown that the ionic liquid is dispersed in the polymeric matrix, but ionic pairs remain in the polymer electrolyte. Imidazolium cations are coordinated by both the anions and the oxygen atoms of PEO chains. Probability density maps of occurrences of nearest neighbors around imidazolium cations give a detailed physical picture of the environment experienced by cations. Conformational changes on PEO chains upon addition of the ionic liquid are identified. The equilibrium structure of simulated systems is also analyzed in reciprocal space by using the static structure factor, S(k). Calculated S(k) display a low wave-vector peak, indicating that spatial correlation in an extended-range order prevail in the ionic liquid polymer electrolytes. Long-range correlations are assigned to nonuniform distribution of ionic species within the simulation box.

Geologic map of MTM -45252 and-45257 quadrangles, Reull Vallis region of Mars

USGS Publications Warehouse

Mest, Scott C.; Crown, David A.

2003-01-01

Mars Transverse Mercator (MTM) quadrangles -45252 and -45257 (latitude 42.5° S. to 47.5°S., longitude 250° W. to 260° W.) cover a portion of the highlands of Promethei Terra east of Hellas basin. The map area consists of heavily cratered ancient highland materials having moderate to high relief, isolated knobs and massifs of rugged mountainous material, and extensive tracts of smooth and channeled plains. Part of the ~1,500-km-long Reull Vallis outflow system is within the map area. The area also contains surficial deposits, such as the prominent large debris aprons that commonly surround highland massifs. Regional slopes are to the west, toward the Hellas basin, as indicated by topographic maps of Mars. Approximately 60 percent of the surface of Mars is covered by rugged, heavily cratered terrains believed to represent the effects of heavy bombardment in the inner solar system about 4.0 billion years ago. Much of this terrain, including that within the map area, records a long history of modification by tectonism, fluvial processes, mass wasting, and eolian activity. The presence of fluvial features to the east of Hellas basin, including Reull Vallis and other smaller channels, has significant implications for past environmental conditions. The degraded terrains surrounding Hellas basin provide constraints on the role and timing of volatile-driven activity in the evolution of the highlands. Current photogeologic mapping at 1:500,000 scale (see also Mest and Crown, 2002) from analysis of Viking Orbiter images complements previous geomorphic studies of Reull Vallis and other highland outflow systems, drainage networks, and highland debris aprons, as well as regional geologic mapping studies and geologic mapping of Hellas basin as a whole at 1:5,000,000 scale. Viking Orbiter image coverage of the map area generally ranges from 160 to 220 m/pixel; the central part of the map area is covered by higher resolution images of about 47 m/pixel. Crater size-frequency distributions have been compiled to constrain the relative ages of geologic units and determine the timing and duration of inferred geologic processes.

Wide field and highly sensitive angiography based on optical coherence tomography with akinetic swept source.

PubMed

Xu, Jingjiang; Song, Shaozhen; Wei, Wei; Wang, Ruikang K

2017-01-01

Wide-field vascular visualization in bulk tissue that is of uneven surface is challenging due to the relatively short ranging distance and significant sensitivity fall-off for most current optical coherence tomography angiography (OCTA) systems. We report a long ranging and ultra-wide-field OCTA (UW-OCTA) system based on an akinetic swept laser. The narrow instantaneous linewidth of the swept source with its high phase stability, combined with high-speed detection in the system enable us to achieve long ranging (up to 46 mm) and almost negligible system sensitivity fall-off. To illustrate these advantages, we compare the basic system performances between conventional spectral domain OCTA and UW-OCTA systems and their functional imaging of microvascular networks in living tissues. In addition, we show that the UW-OCTA is capable of different depth-ranging of cerebral blood flow within entire brain in mice, and providing unprecedented blood perfusion map of human finger in vivo . We believe that the UW-OCTA system has promises to augment the existing clinical practice and explore new biomedical applications for OCT imaging.

Wide field and highly sensitive angiography based on optical coherence tomography with akinetic swept source

PubMed Central

Xu, Jingjiang; Song, Shaozhen; Wei, Wei; Wang, Ruikang K.

2016-01-01

Wide-field vascular visualization in bulk tissue that is of uneven surface is challenging due to the relatively short ranging distance and significant sensitivity fall-off for most current optical coherence tomography angiography (OCTA) systems. We report a long ranging and ultra-wide-field OCTA (UW-OCTA) system based on an akinetic swept laser. The narrow instantaneous linewidth of the swept source with its high phase stability, combined with high-speed detection in the system enable us to achieve long ranging (up to 46 mm) and almost negligible system sensitivity fall-off. To illustrate these advantages, we compare the basic system performances between conventional spectral domain OCTA and UW-OCTA systems and their functional imaging of microvascular networks in living tissues. In addition, we show that the UW-OCTA is capable of different depth-ranging of cerebral blood flow within entire brain in mice, and providing unprecedented blood perfusion map of human finger in vivo. We believe that the UW-OCTA system has promises to augment the existing clinical practice and explore new biomedical applications for OCT imaging. PMID:28101428

Extensive Conserved Synteny of Genes between the Karyotypes of Manduca sexta and Bombyx mori Revealed by BAC-FISH Mapping

PubMed Central

Tanaka-Okuyama, Makiko; Shibata, Fukashi; Yoshido, Atsuo; Marec, František; Wu, Chengcang; Zhang, Hongbin; Goldsmith, Marian R.

2009-01-01

Background Genome sequencing projects have been completed for several species representing four highly diverged holometabolous insect orders, Diptera, Hymenoptera, Coleoptera, and Lepidoptera. The striking evolutionary diversity of insects argues a need for efficient methods to apply genome information from such models to genetically uncharacterized species. Constructing conserved synteny maps plays a crucial role in this task. Here, we demonstrate the use of fluorescence in situ hybridization with bacterial artificial chromosome probes as a powerful tool for physical mapping of genes and comparative genome analysis in Lepidoptera, which have numerous and morphologically uniform holokinetic chromosomes. Methodology/Principal Findings We isolated 214 clones containing 159 orthologs of well conserved single-copy genes of a sequenced lepidopteran model, the silkworm, Bombyx mori, from a BAC library of a sphingid with an unexplored genome, the tobacco hornworm, Manduca sexta. We then constructed a BAC-FISH karyotype identifying all 28 chromosomes of M. sexta by mapping 124 loci using the corresponding BAC clones. BAC probes from three M. sexta chromosomes also generated clear signals on the corresponding chromosomes of the convolvulus hawk moth, Agrius convolvuli, which belongs to the same subfamily, Sphinginae, as M. sexta. Conclusions/Significance Comparison of the M. sexta BAC physical map with the linkage map and genome sequence of B. mori pointed to extensive conserved synteny including conserved gene order in most chromosomes. Only a few rearrangements, including three inversions, three translocations, and two fission/fusion events were estimated to have occurred after the divergence of Bombycidae and Sphingidae. These results add to accumulating evidence for the stability of lepidopteran genomes. Generating signals on A. convolvuli chromosomes using heterologous M. sexta probes demonstrated that BAC-FISH with orthologous sequences can be used for karyotyping a wide range of related and genetically uncharacterized species, significantly extending the ability to develop synteny maps for comparative and functional genomics. PMID:19829706

Genetic and physical mapping of homologues of the virus resistance gene Rx1 and the cyst nematode resistance gene Gpa2 in potato.

PubMed

Bakker, E; Butterbach, P; Rouppe van der Voort, J; van der Vossen, E; van Vliet, J; Bakker, J; Goverse, A

2003-05-01

Nine resistance gene homologues (RGHs) were identified in two diploid potato clones (SH and RH), with a specific primer pair based on conserved motifs in the LRR domain of the potato cyst nematode resistance gene Gpa2 and the potato virus X resistance gene Rx1. A modified AFLP method was used to facilitate the genetic mapping of the RGHs in the four haplotypes under investigation. All nine RGHs appeared to be located in the Gpa2/ Rx1 cluster on chromosome XII. Construction of a physical map using bacterial artificial chromosome (BAC) clones for both the Solanum tuberosum ssp. tuberosum and the S. tuberosum ssp. andigena haplotype of SH showed that the RGHs are located within a stretch of less than 200 kb. Sequence analysis of the RGHs revealed that they are highly similar (93 to 95%) to Gpa2 and Rx1. The sequence identities among all RGHs range from 85 to 100%. Two pairs of RGHs are identical, or nearly so (100 and 99.9%), with each member located in a different genotype. Southern-blot analysis on genomic DNA revealed no evidence for additional homologues outside the Gpa2/ Rx1 cluster on chromosome XII.

Molecular Definition of the 22q11 Deletions in Velo-Cardio-Facial Syndrome

PubMed Central

Morrow, Bernice; Goldberg, Rosalie; Carlson, Christine; Gupta, Ruchira Das; Sirotkin, Howard; Collins, John; Dunham, Ian; O'Donnell, Hilary; Scambler, Peter; Shprintzen, Robert; Kucherlapati, Raju

1995-01-01

Velo-cardio-facial syndrome (VCFS) is a common genetic disorder among individuals with cleft palate and is associated with hemizygous deletions in human chromosome 22q11. Toward the molecular definition of the deletions, we constructed a physical map of 22q11 in the form of overlapping YACs. The physical map covers >9 cM of genetic distance, estimated to span 5 Mb of DNA, and contains a total of 64 markers. Eleven highly polymorphic short tandem-repeat polymorphic (STRP) markers were placed on the physical map, and 10 of these were unambiguously ordered. The 11 polymorphic markers were used to type the DNA from a total of 61 VCFS patients and 49 unaffected relatives. Comparison of levels of heterozygosity of these markers in VCFS patients and their unaffected relatives revealed that four of these markers are commonly hemizygous among VCFS patients. To confirm these results and to define further the breakpoints in VCFS patients, 15 VCFS individuals and their unaffected parents were genotyped for the 11 STRP markers. Haplotypes generated from this study revealed that 82% of the patients have deletions that can be defined by the STRP markers. The results revealed that all patients who have a deletion share a common proximal breakpoint, while there are two distinct distal breakpoints. Markers D22S941 and D22S944 appear to be consistently hemizygous in patients with deletions. Both of these markers are located on a single nonchimeric YAC that is 400 kb long. The results also show that the parental origin of the deleted chromosome does not have any effect on the phenotypic manifestation ImagesFigure 2Figure 3 PMID:7762562

High-speed atomic force microscopy and peak force tapping control

NASA Astrophysics Data System (ADS)

Hu, Shuiqing; Mininni, Lars; Hu, Yan; Erina, Natalia; Kindt, Johannes; Su, Chanmin

2012-03-01

ITRS Roadmap requires defect size measurement below 10 nanometers and challenging classifications for both blank and patterned wafers and masks. Atomic force microscope (AFM) is capable of providing metrology measurement in 3D at sub-nanometer accuracy but has long suffered from drawbacks in throughput and limitation of slow topography imaging without chemical information. This presentation focus on two disruptive technology developments, namely high speed AFM and quantitative nanomechanical mapping, which enables high throughput measurement with capability of identifying components through concurrent physical property imaging. The high speed AFM technology has allowed the imaging speed increase by 10-100 times without loss of the data quality. Such improvement enables the speed of defect review on a wafer to increase from a few defects per hour to nearly 100 defects an hour, approaching the requirements of ITRS Roadmap. Another technology development, Peak Force Tapping, substantially simplified the close loop system response, leading to self-optimization of most challenging samples groups to generate expert quality data. More importantly, AFM also simultaneously provides a series of mechanical property maps with a nanometer spatial resolution during defect review. These nanomechanical maps (including elastic modulus, hardness, and surface adhesion) provide complementary information for elemental analysis, differentiate defect materials by their physical properties, and assist defect classification beyond topographic measurements. This paper will explain the key enabling technologies, namely high speed tip-scanning AFM using innovative flexure design and control algorithm. Another critical element is AFM control using Peak Force Tapping, in which the instantaneous tip-sample interaction force is measured and used to derive a full suite of physical properties at each imaging pixel. We will provide examples of defect review data on different wafers and media disks. The similar AFM-based defect review capacity was also applied to EUV masks.

Molecular definition of the 22q11 deletions in velo-cardio-facial syndrome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morrow, B.; Carlson, C.; Gupta, R.D.

Velo-cardio-facial syndrome (VCFS) is a common genetic disorder among individuals with cleft plate and is associated with hemizygous deletions in human chromosome 22q11. Toward the molecular definition of the deletions, we constructed a physical map of 22q11 in the form of overlapping YACs. The physical map covers >9 cM of genetic distance, estimated to span 5 Mb of DNA, and contains a total of 64 markers. Eleven highly polymorphic short tandem-repeat polymorphic (STRP) markers were placed on the physical map, and 10 of these were unambiguously ordered. The 11 polymorphic markers were used to type the DNA from a totalmore » of 61 VCFS patients and 49 unaffected relatives. Comparison of levels of heterozygosity of these markers in VCFS patients and their unaffected relatives revealed that four of these markers are commonly hemizygous among VCFS patients. To confirm these results and to define further the breakpoints in VCFS patients, 15 VCFS individuals and their unaffected parents were genotyped for the 11 STRP markers. Haplotypes generated from this study revealed that 82% of the patients have deletions that can be defined by the STRP markers. The results revealed that all patients who have a deletion share a common proximal breakpoint, while there are two distinct distal breakpoints. Markers D22S941 and D22S944 appear to be consistently hemizygous in patients with deletions. Both of these markers are located on a single nonchimeric YAC that is 400 kb long. The results show that the parental origin of the deleted chromosome does not have any effect on the phenotypic manifestation. 58 refs., 6 figs., 2 tabs.« less

Self-organized molecular films with long-range quasiperiodic order.

PubMed

Fournée, Vincent; Gaudry, Émilie; Ledieu, Julian; de Weerd, Marie-Cécile; Wu, Dongmei; Lograsso, Thomas

2014-04-22

Self-organized molecular films with long-range quasiperiodic order have been grown by using the complex potential energy landscape of quasicrystalline surfaces as templates. The long-range order arises from a specific subset of quasilattice sites acting as preferred adsorption sites for the molecules, thus enforcing a quasiperiodic structure in the film. These adsorption sites exhibit a local 5-fold symmetry resulting from the cut by the surface plane through the cluster units identified in the bulk solid. Symmetry matching between the C60 fullerene and the substrate leads to a preferred adsorption configuration of the molecules with a pentagonal face down, a feature unique to quasicrystalline surfaces, enabling efficient chemical bonding at the molecule-substrate interface. This finding offers opportunities to investigate the physical properties of model 2D quasiperiodic systems, as the molecules can be functionalized to yield architectures with tailor-made properties.

Toward lattice fractional vector calculus

NASA Astrophysics Data System (ADS)

Tarasov, Vasily E.

2014-09-01

An analog of fractional vector calculus for physical lattice models is suggested. We use an approach based on the models of three-dimensional lattices with long-range inter-particle interactions. The lattice analogs of fractional partial derivatives are represented by kernels of lattice long-range interactions, where the Fourier series transformations of these kernels have a power-law form with respect to wave vector components. In the continuum limit, these lattice partial derivatives give derivatives of non-integer order with respect to coordinates. In the three-dimensional description of the non-local continuum, the fractional differential operators have the form of fractional partial derivatives of the Riesz type. As examples of the applications of the suggested lattice fractional vector calculus, we give lattice models with long-range interactions for the fractional Maxwell equations of non-local continuous media and for the fractional generalization of the Mindlin and Aifantis continuum models of gradient elasticity.

High-Resolution Fault Zone Monitoring and Imaging Using Long Borehole Arrays

NASA Astrophysics Data System (ADS)

Paulsson, B. N.; Karrenbach, M.; Goertz, A. V.; Milligan, P.

2004-12-01

Long borehole seismic receiver arrays are increasingly used in the petroleum industry as a tool for high--resolution seismic reservoir characterization. Placing receivers in a borehole avoids the distortion of reflected seismic waves by the near-surface weathering layer which leads to greatly improved vector fidelity and a much higher frequency content of 3-component recordings. In addition, a borehole offers a favorable geometry to image near-vertically dipping or overturned structure such as, e.g., salt flanks or faults. When used for passive seismic monitoring, long borehole receiver arrays help reducing depth uncertainties of event locations. We investigate the use of long borehole seismic arrays for high-resolution fault zone characterization in the vicinity of the San Andreas Fault Observatory at Depth (SAFOD). We present modeling scenarios to show how an image of the vertically dipping fault zone down to the penetration point of the SAFOD well can be obtained by recording surface sources in a long array within the deviated main hole. We assess the ability to invert fault zone reflections for rock physical parameters by means of amplitude versus offset or angle (AVO/AVA) analyzes. The quality of AVO/AVA studies depends on the ability to illuminate the fault zone over a wide range of incidence angles. We show how the length of the receiver array and the receiver spacing within the borehole influence the size of the volume over which reliable AVO/AVA information could be obtained. By means of AVO/AVA studies one can deduce hydraulic properties of the fault zone such as the type of fluids that might be present, the porosity, and the fluid saturation. Images of the fault zone obtained from a favorable geometry with a sufficient illumination will enable us to map fault zone properties in the surrounding of the main hole penetration point. One of the targets of SAFOD is to drill into an active rupture patch of an earthquake cluster. The question of whether or not this goal has indeed been achieved at the time the fault zone is penetrated can only be answered if the rock properties found at the penetration point can be compared to the surrounding volume. This task will require mapping of rock properties inverted from AVO/AVA analyzes of fault zone reflections. We will also show real data examples of a test deployment of a 4000 ft, 80-level clamped 3-component receiver array in the SAFOD main hole in 2004.

Lack of small-scale clustering in 21-cm intensity maps crossed with 2dF galaxy densities at z ~ 0.08

NASA Astrophysics Data System (ADS)

Anderson, Christopher; Luciw, Nicholas; Li, Yi-Chao; Kuo, Cheng-Yu; Yadav, Jaswant; Masui, Kiyoshi; Chang, Tzu-Ching; Chen, Xuelei; Oppermann, Niels; Pen, Ue-Li; Timbie, Peter T.

2017-06-01

I report results from 21-cm intensity maps acquired from the Parkes radio telescope and cross-correlated with galaxy maps from the 2dF galaxy survey. The data span the redshift range 0.057

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA.

PubMed

Kebschull, Justus M; Garcia da Silva, Pedro; Reid, Ashlan P; Peikon, Ian D; Albeanu, Dinu F; Zador, Anthony M

2016-09-07

Neurons transmit information to distant brain regions via long-range axonal projections. In the mouse, area-to-area connections have only been systematically mapped using bulk labeling techniques, which obscure the diverse projections of intermingled single neurons. Here we describe MAPseq (Multiplexed Analysis of Projections by Sequencing), a technique that can map the projections of thousands or even millions of single neurons by labeling large sets of neurons with random RNA sequences ("barcodes"). Axons are filled with barcode mRNA, each putative projection area is dissected, and the barcode mRNA is extracted and sequenced. Applying MAPseq to the locus coeruleus (LC), we find that individual LC neurons have preferred cortical targets. By recasting neuroanatomy, which is traditionally viewed as a problem of microscopy, as a problem of sequencing, MAPseq harnesses advances in sequencing technology to permit high-throughput interrogation of brain circuits. Copyright © 2016 Elsevier Inc. All rights reserved.

Chimeras and clusters in networks of hyperbolic chaotic oscillators

NASA Astrophysics Data System (ADS)

Cano, A. V.; Cosenza, M. G.

2017-03-01

We show that chimera states, where differentiated subsets of synchronized and desynchronized dynamical elements coexist, can emerge in networks of hyperbolic chaotic oscillators subject to global interactions. As local dynamics we employ Lozi maps, which possess hyperbolic chaotic attractors. We consider a globally coupled system of these maps and use two statistical quantities to describe its collective behavior: the average fraction of elements belonging to clusters and the average standard deviation of state variables. Chimera states, clusters, complete synchronization, and incoherence are thus characterized on the space of parameters of the system. We find that chimera states are related to the formation of clusters in the system. In addition, we show that chimera states arise for a sufficiently long range of interactions in nonlocally coupled networks of these maps. Our results reveal that, under some circumstances, hyperbolicity does not impede the formation of chimera states in networks of coupled chaotic systems, as it had been previously hypothesized.

Mapping the space radiation environment in LEO orbit by the SATRAM Timepix payload on board the Proba-V satellite

NASA Astrophysics Data System (ADS)

Granja, Carlos; Polansky, Stepan

2016-07-01

Detailed spatial- and time-correlated maps of the space radiation environment in Low Earth Orbit (LEO) are produced by the spacecraft payload SATRAM operating in open space on board the Proba-V satellite from the European Space Agency (ESA). Equipped with the hybrid semiconductor pixel detector Timepix, the compact radiation monitor payload provides the composition and spectral characterization of the mixed radiation field with quantum-counting and imaging dosimetry sensitivity, energetic charged particle tracking, directionality and energy loss response in wide dynamic range in terms of particle types, dose rates and particle fluxes. With a polar orbit (sun synchronous, 98° inclination) at the altitude of 820 km the payload samples the space radiation field at LEO covering basically the whole planet. First results of long-period data evaluation in the form of time-and spatially-correlated maps of total dose rate (all particles) are given.

Map of physics

NASA Astrophysics Data System (ADS)

2008-10-01

Based on bibliometric data from information-services provider Thomson Reuters, this map reveals "core areas" of physics, shown as coloured circular nodes, and the relationship between these subdisciplines, shown as lines.

Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

PubMed Central

Wang, Xiaoming; Kudrna, David A.; Pan, Yonglong; Wang, Hao; Liu, Lin; Lin, Haiyan; Zhang, Jianwei; Song, Xiang; Goicoechea, Jose Luis; Wing, Rod A.; Zhang, Qifa; Luo, Meizhong

2014-01-01

Bacterial artificial chromosome (BAC) physical maps embedding a large number of BAC end sequences (BESs) were generated for Oryza sativa ssp. indica varieties Minghui 63 (MH63) and Zhenshan 97 (ZS97) and were compared with the genome sequences of O. sativa spp. japonica cv. Nipponbare and O. sativa ssp. indica cv. 93-11. The comparisons exhibited substantial diversities in terms of large structural variations and small substitutions and indels. Genome-wide BAC-sized and contig-sized structural variations were detected, and the shared variations were analyzed. In the expansion regions of the Nipponbare reference sequence, in comparison to the MH63 and ZS97 physical maps, as well as to the previously constructed 93-11 physical map, the amounts and types of the repeat contents, and the outputs of gene ontology analysis, were significantly different from those of the whole genome. Using the physical maps of four wild Oryza species from OMAP (http://www.omap.org) as a control, we detected many conserved and divergent regions related to the evolution process of O. sativa. Between the BESs of MH63 and ZS97 and the two reference sequences, a total of 1532 polymorphic simple sequence repeats (SSRs), 71,383 SNPs, 1767 multiple nucleotide polymorphisms, 6340 insertions, and 9137 deletions were identified. This study provides independent whole-genome resources for intra- and intersubspecies comparisons and functional genomics studies in O. sativa. Both the comparative physical maps and the GBrowse, which integrated the QTL and molecular markers from GRAMENE (http://www.gramene.org) with our physical maps and analysis results, are open to the public through our Web site (http://gresource.hzau.edu.cn/resource/resource.html). PMID:24424778

Meeting the Demands of Professional Education: A Study of Mind Mapping in a Professional Doctoral Physical Therapy Education Program

ERIC Educational Resources Information Center

Pollard, Elicia L.

2010-01-01

The purposes of this study are to investigate whether the quiz scores of physical therapy students who integrated mind mapping in their learning strategies are significantly different than the quiz scores of students who did not use mind mapping to learn in a lecture-based research course and examine the students' perceptions of mind mapping as a…

A High-Resolution InDel (Insertion–Deletion) Markers-Anchored Consensus Genetic Map Identifies Major QTLs Governing Pod Number and Seed Yield in Chickpea

PubMed Central

Srivastava, Rishi; Singh, Mohar; Bajaj, Deepak; Parida, Swarup K.

2016-01-01

Development and large-scale genotyping of user-friendly informative genome/gene-derived InDel markers in natural and mapping populations is vital for accelerating genomics-assisted breeding applications of chickpea with minimal resource expenses. The present investigation employed a high-throughput whole genome next-generation resequencing strategy in low and high pod number parental accessions and homozygous individuals constituting the bulks from each of two inter-specific mapping populations [(Pusa 1103 × ILWC 46) and (Pusa 256 × ILWC 46)] to develop non-erroneous InDel markers at a genome-wide scale. Comparing these high-quality genomic sequences, 82,360 InDel markers with reference to kabuli genome and 13,891 InDel markers exhibiting differentiation between low and high pod number parental accessions and bulks of aforementioned mapping populations were developed. These informative markers were structurally and functionally annotated in diverse coding and non-coding sequence components of genome/genes of kabuli chickpea. The functional significance of regulatory and coding (frameshift and large-effect mutations) InDel markers for establishing marker-trait linkages through association/genetic mapping was apparent. The markers detected a greater amplification (97%) and intra-specific polymorphic potential (58–87%) among a diverse panel of cultivated desi, kabuli, and wild accessions even by using a simpler cost-efficient agarose gel-based assay implicating their utility in large-scale genetic analysis especially in domesticated chickpea with narrow genetic base. Two high-density inter-specific genetic linkage maps generated using aforesaid mapping populations were integrated to construct a consensus 1479 InDel markers-anchored high-resolution (inter-marker distance: 0.66 cM) genetic map for efficient molecular mapping of major QTLs governing pod number and seed yield per plant in chickpea. Utilizing these high-density genetic maps as anchors, three major genomic regions harboring each of pod number and seed yield robust QTLs (15–28% phenotypic variation explained) were identified on chromosomes 2, 4, and 6. The integration of genetic and physical maps at these QTLs mapped on chromosomes scaled-down the long major QTL intervals into high-resolution short pod number and seed yield robust QTL physical intervals (0.89–2.94 Mb) which were essentially got validated in multiple genetic backgrounds of two chickpea mapping populations. The genome-wide InDel markers including natural allelic variants and genomic loci/genes delineated at major six especially in one colocalized novel congruent robust pod number and seed yield robust QTLs mapped on a high-density consensus genetic map were found most promising in chickpea. These functionally relevant molecular tags can drive marker-assisted genetic enhancement to develop high-yielding cultivars with increased seed/pod number and yield in chickpea. PMID:27695461

Disability and sleep duration: evidence from the American Time Use Survey.

PubMed

Shandra, Carrie L; Kruger, Allison; Hale, Lauren

2014-07-01

Regular short and long sleep durations are associated with increased mortality and morbidity. While previous research shows significant sleep disparities between people with and without disabilities, less is known about the association between different types of disability and high-risk sleep using nationally representative data. We examine the association between short and long sleep durations and having a work disability or an impairment in sensory, cognitive, or physical functioning among a nationally representative sample of working-age adults in the United States. We estimate multinomial logistic regression models using data from the 2003-2012 American Time Use Survey to identify how different types of disabling conditions--net of other sociodemographic factors--relate to the likelihood of reporting short (6 h or fewer) or long (9 h or more) sleep, versus mid-range (between 6 and 9 h) sleep. For respondents with work disabilities versus those without work disabilities, the relative risk of short and long sleep is 1.4 and 1.5 times (respectively) that of those with mid-range sleep. The risk of short and long sleep durations is also higher among respondents with cognitive, physical, or multiple impairments. Individuals with disabilities are less likely than those without disabilities to have optimal sleep durations. These results demonstrate the importance of health promotion services among this population, with specific attention to sleep hygiene interventions. Copyright © 2014 Elsevier Inc. All rights reserved.

Constructing a 'Chromonome' of Yellowtail (Seriola quinqueradiata) for Comparative Analysis of Chromosomal Rearrangements

PubMed Central

Kawase, Junya; Aoki, Jun-ya; Araki, Kazuo

2018-01-01

To investigate chromosome evolution in fish species, we newly mapped 181 markers that allowed us to construct a yellowtail (Seriola quinqueradiata) radiation hybrid (RH) physical map with 1,713 DNA markers, which was far denser than a previous map, and we anchored the de novo assembled sequences onto the RH physical map. Finally, we mapped a total of 13,977 expressed sequence tags (ESTs) on a genome sequence assembly aligned with the physical map. Using the high-density physical map and anchored genome sequences, we accurately compared the yellowtail genome structure with the genome structures of five model fishes to identify characteristics of the yellowtail genome. Between yellowtail and Japanese medaka (Oryzias latipes), almost all regions of the chromosomes were conserved and some blocks comprising several markers were translocated. Using the genome information of the spotted gar (Lepisosteus oculatus) as a reference, we further documented syntenic relationships and chromosomal rearrangements that occurred during evolution in four other acanthopterygian species (Japanese medaka, zebrafish, spotted green pufferfish and three-spined stickleback). The evolutionary chromosome translocation frequency was 1.5-2-times higher in yellowtail than in medaka, pufferfish, and stickleback. PMID:29290830

Surficial geologic map of the Amboy 30' x 60' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Bedford, David R.; Miller, David M.; Phelps, Geoffrey A.

2010-01-01

The surficial geologic map of the Amboy 30' x 60' quadrangle presents characteristics of surficial materials for an area of approximately 5,000 km2 in the eastern Mojave Desert of southern California. This map consists of new surficial mapping conducted between 2000 and 2007, as well as compilations from previous surficial mapping. Surficial geologic units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects following deposition, and, where appropriate, the lithologic nature of the material. Many physical properties were noted and measured during the geologic mapping. This information was used to classify surficial deposits and to understand their ecological importance. We focus on physical properties that drive hydrologic, biologic, and physical processes such as particle-size distribution (PSD) and bulk density. The database contains point data representing locations of samples for both laboratory determined physical properties and semiquantitative field-based information in the database. We include the locations of all field observations and note the type of information collected in the field to help assist in assessing the quality of the mapping. The publication is separated into three parts: documentation, spatial data, and printable map graphics of the database. Documentation includes this pamphlet, which provides a discussion of the surficial geology and units and the map. Spatial data are distributed as ArcGIS Geodatabase in Microsoft Access format and are accompanied by a readme file, which describes the database contents, and FGDC metadata for the spatial map information. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files that provide a view of the spatial database at the mapped scale.

Exact mapping between system-reservoir quantum models and semi-infinite discrete chains using orthogonal polynomials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chin, Alex W.; Rivas, Angel; Huelga, Susana F.

2010-09-15

By using the properties of orthogonal polynomials, we present an exact unitary transformation that maps the Hamiltonian of a quantum system coupled linearly to a continuum of bosonic or fermionic modes to a Hamiltonian that describes a one-dimensional chain with only nearest-neighbor interactions. This analytical transformation predicts a simple set of relations between the parameters of the chain and the recurrence coefficients of the orthogonal polynomials used in the transformation and allows the chain parameters to be computed using numerically stable algorithms that have been developed to compute recurrence coefficients. We then prove some general properties of this chain systemmore » for a wide range of spectral functions and give examples drawn from physical systems where exact analytic expressions for the chain properties can be obtained. Crucially, the short-range interactions of the effective chain system permit these open-quantum systems to be efficiently simulated by the density matrix renormalization group methods.« less

Mapping of the locus for autosomal dominant amelogenesis imperfecta (AIH2) to a 4-Mb YAC contig on chromosome 4q11-q21

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaerrman, C.; Holmgren, G.; Forsman, K.

1997-01-15

Amelogenesis imperfecta (Al) is a clinically and genetically heterogeneous group of inherited enamel defects. We recently mapped a locus for autosomal dominant local hypoplastic amelogenesis imperfecta (AIH2) to the long arm of chromosome 4. The disease gene was localized to a 17.6-cM region between the markers D4S392 and D4S395. The albumin gene (ALB), located in the same interval, was a candidate gene for autosomal dominant AI (ADAI) since albumin has a potential role in enamel maturation. Here we describe refined mapping of the AIH2 locus and the construction of marker maps by radiation hybrid mapping and yeast artificial chromosome (YAC)-basedmore » sequence tagged site-content mapping. A radiation hybrid map consisting of 11 microsatellite markers in the 5-cM interval between D4S409 and D4S1558 was constructed. Recombinant haplotypes in six Swedish ADAI families suggest that the disease gene is located in the interval between D4S2421 and ALB. ALB is therefore not likely to be the disease-causing gene. Affected members in all six families share the same allele haplotypes, indicating a common ancestral mutation in all families. The AIH2 critical region is less than 4 cM and spans a physical distance of approximately 4 Mb as judged from radiation hybrid maps. A YAC contig over the AIH2 critical region including several potential candidate genes was constructed. 35 refs., 4 figs., 1 tab.« less

Obstacle Recognition Based on Machine Learning for On-Chip LiDAR Sensors in a Cyber-Physical System

PubMed Central

Beruvides, Gerardo

2017-01-01

Collision avoidance is an important feature in advanced driver-assistance systems, aimed at providing correct, timely and reliable warnings before an imminent collision (with objects, vehicles, pedestrians, etc.). The obstacle recognition library is designed and implemented to address the design and evaluation of obstacle detection in a transportation cyber-physical system. The library is integrated into a co-simulation framework that is supported on the interaction between SCANeR software and Matlab/Simulink. From the best of the authors’ knowledge, two main contributions are reported in this paper. Firstly, the modelling and simulation of virtual on-chip light detection and ranging sensors in a cyber-physical system, for traffic scenarios, is presented. The cyber-physical system is designed and implemented in SCANeR. Secondly, three specific artificial intelligence-based methods for obstacle recognition libraries are also designed and applied using a sensory information database provided by SCANeR. The computational library has three methods for obstacle detection: a multi-layer perceptron neural network, a self-organization map and a support vector machine. Finally, a comparison among these methods under different weather conditions is presented, with very promising results in terms of accuracy. The best results are achieved using the multi-layer perceptron in sunny and foggy conditions, the support vector machine in rainy conditions and the self-organized map in snowy conditions. PMID:28906450

Obstacle Recognition Based on Machine Learning for On-Chip LiDAR Sensors in a Cyber-Physical System.

PubMed

Castaño, Fernando; Beruvides, Gerardo; Haber, Rodolfo E; Artuñedo, Antonio

2017-09-14

Collision avoidance is an important feature in advanced driver-assistance systems, aimed at providing correct, timely and reliable warnings before an imminent collision (with objects, vehicles, pedestrians, etc.). The obstacle recognition library is designed and implemented to address the design and evaluation of obstacle detection in a transportation cyber-physical system. The library is integrated into a co-simulation framework that is supported on the interaction between SCANeR software and Matlab/Simulink. From the best of the authors' knowledge, two main contributions are reported in this paper. Firstly, the modelling and simulation of virtual on-chip light detection and ranging sensors in a cyber-physical system, for traffic scenarios, is presented. The cyber-physical system is designed and implemented in SCANeR. Secondly, three specific artificial intelligence-based methods for obstacle recognition libraries are also designed and applied using a sensory information database provided by SCANeR. The computational library has three methods for obstacle detection: a multi-layer perceptron neural network, a self-organization map and a support vector machine. Finally, a comparison among these methods under different weather conditions is presented, with very promising results in terms of accuracy. The best results are achieved using the multi-layer perceptron in sunny and foggy conditions, the support vector machine in rainy conditions and the self-organized map in snowy conditions.

The benefits of soluble non-bacterial fraction of kefir on blood pressure and cardiac hypertrophy in hypertensive rats are mediated by an increase in baroreflex sensitivity and decrease in angiotensin-converting enzyme activity.

PubMed

Brasil, Girlandia Alexandre; Silva-Cutini, Mirian de Almeida; Moraes, Flávia de Souza Andrade; Pereira, Thiago de Melo Costa; Vasquez, Elisardo Corral; Lenz, Dominik; Bissoli, Nazaré Souza; Endringer, Denise Coutinho; de Lima, Ewelyne Miranda; Biancardi, Vinícia Campana; Maia, June Ferreira; de Andrade, Tadeu Uggere

We aimed to evaluate whether long-term treatment with the soluble non-bacterial fraction of kefir affects mean arterial pressure (MAP) and cardiac hypertrophy through the modulation of baroreflex sensitivity, ACE activity, and the inflammatory-to-anti-inflammatory cytokine ratio in spontaneously hypertensive rats (SHRs). SHRs were treated with the soluble non-bacterial kefir fraction (SHR-kefir) or with kefir vehicle (SHR-soluble fraction of milk). Normotensive control Wistar Kyoto animals received the soluble fraction of milk. All treatments were administered by gavage (0.3 mL/100g/body weight), once daily for eight weeks. At the end, after basal MAP and Heart Rate (HT) measurement, barorreflex sensitivity was evaluated through in bolus administrations of sodium nitroprusside and phenylephrine (AP 50 [arterial pressure 50%], the lower plateau, and HR range were measured). ACE activity and cytokines (TNF-α and IL-10) were evaluated by ELISA. Cardiac hypertrophy was analysed morphometrically. Compared to SHR control, SHR-kefir exhibited a significant decrease in both MAP (SHR: 184 ± 5; SHR-Kefir: 142 ± 8 mmHg), and HR (SHR: 360 ± 10; SHR-kefir: 310 ± 14 bpm). The non-bacterial fraction of kefir also reduced cardiac hypertrophy, TNF-α-to-IL10 ratio, and ACE activity in SHRs. SHR-kefir baroreflex sensitivity, resulted in a partial but significant recovery of baroreflex gain, as demonstrated by improvements in AP 50 , the lower plateau, and HR range. In summary, our results indicate that long-term administration of the non-bacterial fraction of kefir promotes a significant decrease in both MAP and HR, by improving baroreflex, and reduces cardiac hypertrophy in SHRs, likely via ACE inhibition, and reduction of the TNF-α-to-IL10 ratio. Copyright © 2018 Elsevier Inc. All rights reserved.

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

PubMed Central

2011-01-01

Background Switchgrass, a C4 species and a warm-season grass native to the prairies of North America, has been targeted for development into an herbaceous biomass fuel crop. Genetic improvement of switchgrass feedstock traits through marker-assisted breeding and biotechnology approaches calls for genomic tools development. Establishment of integrated physical and genetic maps for switchgrass will accelerate mapping of value added traits useful to breeding programs and to isolate important target genes using map based cloning. The reported polyploidy series in switchgrass ranges from diploid (2X = 18) to duodecaploid (12X = 108). Like in other large, repeat-rich plant genomes, this genomic complexity will hinder whole genome sequencing efforts. An extensive physical map providing enough information to resolve the homoeologous genomes would provide the necessary framework for accurate assembly of the switchgrass genome. Results A switchgrass BAC library constructed by partial digestion of nuclear DNA with EcoRI contains 147,456 clones covering the effective genome approximately 10 times based on a genome size of 3.2 Gigabases (~1.6 Gb effective). Restriction digestion and PFGE analysis of 234 randomly chosen BACs indicated that 95% of the clones contained inserts, ranging from 60 to 180 kb with an average of 120 kb. Comparative sequence analysis of two homoeologous genomic regions harboring orthologs of the rice OsBRI1 locus, a low-copy gene encoding a putative protein kinase and associated with biomass, revealed that orthologous clones from homoeologous chromosomes can be unambiguously distinguished from each other and correctly assembled to respective fingerprint contigs. Thus, the data obtained not only provide genomic resources for further analysis of switchgrass genome, but also improve efforts for an accurate genome sequencing strategy. Conclusions The construction of the first switchgrass BAC library and comparative analysis of homoeologous harboring OsBRI1 orthologs present a glimpse into the switchgrass genome structure and complexity. Data obtained demonstrate the feasibility of using HICF fingerprinting to resolve the homoeologous chromosomes of the two distinct genomes in switchgrass, providing a robust and accurate BAC-based physical platform for this species. The genomic resources and sequence data generated will lay the foundation for deciphering the switchgrass genome and lead the way for an accurate genome sequencing strategy. PMID:21767393

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits.

PubMed

Saski, Christopher A; Li, Zhigang; Feltus, Frank A; Luo, Hong

2011-07-18

Switchgrass, a C4 species and a warm-season grass native to the prairies of North America, has been targeted for development into an herbaceous biomass fuel crop. Genetic improvement of switchgrass feedstock traits through marker-assisted breeding and biotechnology approaches calls for genomic tools development. Establishment of integrated physical and genetic maps for switchgrass will accelerate mapping of value added traits useful to breeding programs and to isolate important target genes using map based cloning. The reported polyploidy series in switchgrass ranges from diploid (2X = 18) to duodecaploid (12X = 108). Like in other large, repeat-rich plant genomes, this genomic complexity will hinder whole genome sequencing efforts. An extensive physical map providing enough information to resolve the homoeologous genomes would provide the necessary framework for accurate assembly of the switchgrass genome. A switchgrass BAC library constructed by partial digestion of nuclear DNA with EcoRI contains 147,456 clones covering the effective genome approximately 10 times based on a genome size of 3.2 Gigabases (~1.6 Gb effective). Restriction digestion and PFGE analysis of 234 randomly chosen BACs indicated that 95% of the clones contained inserts, ranging from 60 to 180 kb with an average of 120 kb. Comparative sequence analysis of two homoeologous genomic regions harboring orthologs of the rice OsBRI1 locus, a low-copy gene encoding a putative protein kinase and associated with biomass, revealed that orthologous clones from homoeologous chromosomes can be unambiguously distinguished from each other and correctly assembled to respective fingerprint contigs. Thus, the data obtained not only provide genomic resources for further analysis of switchgrass genome, but also improve efforts for an accurate genome sequencing strategy. The construction of the first switchgrass BAC library and comparative analysis of homoeologous harboring OsBRI1 orthologs present a glimpse into the switchgrass genome structure and complexity. Data obtained demonstrate the feasibility of using HICF fingerprinting to resolve the homoeologous chromosomes of the two distinct genomes in switchgrass, providing a robust and accurate BAC-based physical platform for this species. The genomic resources and sequence data generated will lay the foundation for deciphering the switchgrass genome and lead the way for an accurate genome sequencing strategy.

Geologic maps of the eastern Alaska Range, Alaska (1:63,360 scale)

USGS Publications Warehouse

Nokleberg, Warren J.; Aleinikoff, John N.; Bond, Gerard C.; Ferrians, Oscar J.; Herzon, Paige L.; Lange, Ian M.; Miyaoka, Ronny T.; Richter, Donald H.; Schwab, Carl E.; Silva, Steven R.; Smith, Thomas E.; Zehner, Richard E.

2015-01-01

This report provides a description of map units for a suite of 44 inch-to-mile (1:63,360-scale) geologic quadrangle maps of the eastern Alaska Range. This report also contains a geologic and tectonic summary and a comprehensive list of references pertaining to geologic mapping and specialized studies of the region. In addition to the geologic maps of the eastern Alaska Range, this package includes a list of map units and an explanation of map symbols and abbreviations. The geologic maps display detailed surficial and bedrock geology, structural and stratigraphic data, portrayal of the active Denali fault that bisects the core of the east–west-trending range, and portrayal of other young faults along the north and south flanks of the range.

The design and assembly of aluminum mirrors of a three-mirror-anastigmat telescope

NASA Astrophysics Data System (ADS)

Chang, Shenq-Tsong; Lin, Yu-Chuan; Wu, Kun-Huan; Lien, Chun-Chieh; Huang, Ting-Ming; Tsay, Ho-Lin; Chan, Chia-Yen

2017-09-01

Better ground sampling distance (GSD) has been a trend for earth observation satellites. A long-focal-length telescope is required accordingly in systematic point of view. On the other hand, there is size constraint for such long-focal-length telescope especially in space projects. Three-mirror-anastigmat (TMA) was proven to have excellent features of correcting aberrations, wide spectral range and shorter physical requirement [1-3].

Changes in soil physical and chemical properties following organic matter removal and compaction: 20-year response of the aspen Lake-States Long Term Soil Productivity installations

Treesearch

Robert A. Slesak; Brian J. Palik; Anthony W. D' Amato; Valerie J. Kurth

2017-01-01

Soil functions that control plant resource availability can be altered by management activities such as increased organic matter (OM) removal and soil compaction during forest harvesting. The Long Term Soil Productivity study was established to evaluate how these practices influence soil and site productivity using experimental treatments that span a range of forest...

Asset Mapping: A Tool to Enhance Your CSPAP Efforts

ERIC Educational Resources Information Center

Allar, Ishonté; Bulger, Sean

2018-01-01

Comprehensive school physical activity programs (CSPAPs) are one way to help students achieve most, if not all, of the recommended 60 minutes of daily moderate-to-vigorous physical activity (MVPA). Early in the process, one can use asset mapping to help enhance CSPAP efforts. Asset maps provide a valuable opportunity to identify potential partners…

The area postrema does not modulate the long-term salt sensitivity of arterial pressure.

PubMed

Collister, J P; Osborn, J W

1998-10-01

The hindbrain circumventricular organ, the area postrema (AP), receives multiple signals linked to body fluid homeostasis. In addition to baroreceptor input, AP cells contain receptors for ANG II, vasopressin, and atrial natriuretic peptide. Hence, it has been proposed that the AP is critical in long-term adjustments in sympathetic outflow in response to changes in dietary NaCl. The present study was designed to test the hypothesis that long-term control of arterial pressure over a range of dietary NaCl requires an intact AP. Male Sprague-Dawley rats were randomly selected for lesion of the AP (APx) or sham lesion. Three months later, rats were instrumented with radiotelemetry transmitters for continuous monitoring of mean arterial pressure (MAP) and heart rate and were placed in individual metabolic cages. Rats were given 1 wk postoperative recovery. The dietary salt protocol consisted of a 7-day period of 1.0% NaCl (control), 14 days of 4.0% NaCl (high), 7 days of 1.0% NaCl, and finally 14 days of 0.1% NaCl (low). The results are reported as the average arterial pressure observed on the last day of the given dietary salt period: APx (n = 7) 114 +/- 2 (1.0%), 110 +/- 3 (4.0%), 110 +/- 3 (1.0%), and 114 +/- 4 (0.1%) mmHg; sham (n = 6) 115 +/- 2 (1.0%), 114 +/- 3 (4.0%), 111 +/- 3 (1. 0%), and 113 +/- 2 (0.1%) mmHg. Neither group of rats demonstrated significant changes in MAP throughout the entire dietary salt protocol. Furthermore, no significant differences in MAP were detected between groups throughout the protocol. All lesions were histologically verified. These results suggest that the area postrema plays no role in long-term control of arterial pressure during chronic changes in dietary salt.

A physical map of the human regulator of complement activation gene cluster linking the complement genes CR1, CR2, DAF, and C4BP

PubMed Central

1988-01-01

We report the organization of the human genes encoding the complement components C4-binding protein (C4BP), C3b/C4b receptor (CR1), decay accelerating factor (DAF), and C3dg receptor (CR2) within the regulator of complement activation (RCA) gene cluster. Using pulsed field gel electrophoresis analysis these genes have been physically linked and aligned as CR1-CR2-DAF-C4BP in an 800-kb DNA segment. The very tight linkage between the CR1 and the C4BP loci, contrasted with the relative long DNA distance between these genes, suggests the existence of mechanisms interfering with recombination within the RCA gene cluster. PMID:2450163

Usage of Data-Encoded Web Maps with Client Side Color Rendering for Combined Data Access, Visualization and Modeling Purposes

NASA Technical Reports Server (NTRS)

Pliutau, Denis; Prasad, Narashimha S.

2013-01-01

Current approaches to satellite observation data storage and distribution implement separate visualization and data access methodologies which often leads to the need in time consuming data ordering and coding for applications requiring both visual representation as well as data handling and modeling capabilities. We describe an approach we implemented for a data-encoded web map service based on storing numerical data within server map tiles and subsequent client side data manipulation and map color rendering. The approach relies on storing data using the lossless compression Portable Network Graphics (PNG) image data format which is natively supported by web-browsers allowing on-the-fly browser rendering and modification of the map tiles. The method is easy to implement using existing software libraries and has the advantage of easy client side map color modifications, as well as spatial subsetting with physical parameter range filtering. This method is demonstrated for the ASTER-GDEM elevation model and selected MODIS data products and represents an alternative to the currently used storage and data access methods. One additional benefit includes providing multiple levels of averaging due to the need in generating map tiles at varying resolutions for various map magnification levels. We suggest that such merged data and mapping approach may be a viable alternative to existing static storage and data access methods for a wide array of combined simulation, data access and visualization purposes.

Lightning Mapping and Leader Propagation Reconstruction using LOFAR-LIM

NASA Astrophysics Data System (ADS)

Hare, B.; Ebert, U.; Rutjes, C.; Scholten, O.; Trinh, G. T. N.

2017-12-01

LOFAR (LOw Frequency ARray) is a radio telescope that consists of a large number of dual-polarized antennas spread over the northern Netherlands and beyond. The LOFAR for Lightning Imaging project (LOFAR-LIM) has successfully used LOFAR to map out lightning in the Netherlands. Since LOFAR covers a large frequency range (10-90 MHz), has antennas spread over a large area, and saves the raw trace data from the antennas, LOFAR-LIM can combine all the strongest aspects of both lightning mapping arrays and lightning interferometers. These aspects include a nanosecond resolution between pulses, nanosecond timing accuracy, and an ability to map lightning in all 3 spatial dimensions and time. LOFAR should be able to map out overhead lightning with a spatial accuracy on the order of meters. The large amount of complex data provide by LOFAR has presented new data processing challenges, such as handling the time offsets between stations with large baselines and locating as many sources as possible. New algorithms to handle these challenges have been developed and will be discussed. Since the antennas are dual-polarized, all three components of the electric field can be extracted and the structure of the R.F. pulses can be investigated at a large number of distances and angles relative to the lightning source, potentially allowing for modeling of lightning current distributions relevant to the 10 to 90 MHz frequency range. R.F. pulses due to leader propagation will be presented, which show a complex sub-structure, indicating intricate physics that could potentially be reconstructed.

Terrain analysis of the racetrack basin and the sliding rocks of Death Valley

USGS Publications Warehouse

Messina, P.; Stoffer, P.

2000-01-01

The Racetrack Playa's unusual surface features known as sliding rocks have been the subject of an ongoing debate and several mapping projects for half a century, although the causative mechanism remains unresolved. Clasts ranging in volume from large pebbles to medium boulders have, unwitnessed, maneuvered around the nearly flat dry lake over considerable distances. The controversy has persisted partly because eyewitness accounts of the phenomenon continue to be lacking, and the earlier mapping missions were limited in method and geographic range. In July 1996, we generated the first complete map of all observed sliding rock trails by submeter differential Global Positioning System (DGPS) mapping technology. The resulting map shows 162 sliding rocks and associated trails to an accuracy of approximately 30 cm. Although anemometer data are not available in the Racetrack wilderness, wind is clearly a catalyst for sliding rock activity; an inferred wind rose was constructed from DGPS trail segment data. When the entire trail network is examined in plan, some patterns emerge, although other (perhaps expected relations) remain elusive: terrain analysis of the surrounding topography demonstrates that the length and morphology of trails are more closely related to where rocks rested at the onset of motion than to any physical attribute of the rocks themselves. Follow-up surveys in May 1998, May 1999, August 1999, and November 1999 revealed little modification of the July, 1996 sliding rock configuration. Only four rocks were repositioned during the El Nino winter of 1997-1998, suggesting that activity may not be restricted to winter storms. (C) 2000 Elsevier Science B.V. All rights reserved.

Prospective observation of physical activity in critically ill patients who were intubated for more than 48 hours.

PubMed

Berney, Susan C; Rose, Joleen W; Bernhardt, Julie; Denehy, Linda

2015-08-01

Critical illness can result in impaired physical function. Increased physical activity, additional to rehabilitation, has demonstrated improved functional independence at hospital discharge. The purpose of this study was to measure patterns of physical activity in a group of critically ill patients. This was a single-center, open, observational behavioral mapping study performed in a quaternary intensive care unit (ICU) in Melbourne, Australia. Observations were collected every 10 minutes for 8 hours between 8:00 am and 5:00 pm with the highest level of physical activity, patient location, and persons present at the bedside recorded. Two thousand fifty observations were collected across 8 days. Patients spent more than 7 hours in bed (median [interquartile range] of 100% [69%-100%]) participating in little or no activity for approximately 7 hours of the day (median [interquartile range] 96% [76%-96%]). Outside rehabilitation, no activities associated with ambulation were undertaken. Patients who were ventilated at the time of observation compared with those who were not were less likely to be out of bed (98% reduction in odds). Patients spent up to 30% of their time alone. Outside rehabilitation, patients in ICU are inactive and spend approximately one-third of the 8-hour day alone. Strategies to increase physical activity levels in ICU are required. Copyright © 2015 Elsevier Inc. All rights reserved.

Role of Mitochondrial Inheritance on Prostate Cancer Outcome in African American Men. Addendum

DTIC Science & Technology

2016-11-01

DNA sequencing technique developed by our collaborator using single amplicon long-range PCR that permits deep coverage (10,000-20,000X on average) of...the mitochondrial genome. We have sequenced 652 samples derived from frozen fully using this technology. The additional DNA samples derived from...paraffin embedded (FFPE) tissue were more challenging, but have now been sequenced . Mapping of DNA variants in our sequenced genomes to mitochondrial

Portfolios with nonlinear constraints and spin glasses

NASA Astrophysics Data System (ADS)

Gábor, Adrienn; Kondor, I.

1999-12-01

In a recent paper Galluccio, Bouchaud and Potters demonstrated that a certain portfolio problem with a nonlinear constraint maps exactly onto finding the ground states of a long-range spin glass, with the concomitant nonuniqueness and instability of the optimal portfolios. Here we put forward geometric arguments that lead to qualitatively similar conclusions, without recourse to the methods of spin glass theory, and give two more examples of portfolio problems with convex nonlinear constraints.

Combining global positioning system and accelerometer data to determine the locations of physical activity in children.

PubMed

Oreskovic, Nicolas M; Blossom, Jeff; Field, Alison E; Chiang, Sylvia R; Winickoff, Jonathan P; Kleinman, Ronald E

2012-05-01

National trends indicate that children and adolescents are not achieving sufficient levels of physical activity. Combining global positioning system (GPS) technology with accelerometers has the potential to provide an objective determination in locations where youth engage in physical activity. The aim of this study was to identify the optimal methods for collecting combined accelerometer and GPS data in youth, to best locate where children spend time and are physically active. A convenience sample of 24 mid-school children in Massachusetts was included. Accelerometers and GPS units were used to quantify and locate childhood physical activity over 5 weekdays and 2 weekend days. Accelerometer and GPS data were joined by time and mapped with a geographical information system (GIS) using ArcGIS software. Data were collected in winter, spring, summer in 2009-2010, collecting a total of 26,406 matched datapoints overall. Matched data yield was low (19.1% total), regardless of season (winter, 12.8%; spring, 30.1%; summer, 14.3%). Teacher-provided, pre-charged equipment yielded the most matched (30.1%; range: 10.1-52.3%) and greatest average days (6.1 days) of data. Across all seasons, children spent most of their time at home. Outdoor use patterns appeared to vary by season, with street use increasing in spring, and park and playground use increasing in summer. Children spent equal amounts of physical activity time at home and walking in the streets. Overall, the various methods for combining GPS and accelerometer data provided similarly low amounts of combined data. No combined GPS and accelerometer data collection method proved superior in every data return category, but use of GIS to map joined accelerometer and GPS data can demarcate childhood physical activity locations.

In Situ Mapping of the Organic Matter in Carbonaceous Chondrites and Mineral Relationships

NASA Technical Reports Server (NTRS)

Clemett, Simon J.; Messenger, S.; Thomas-Keprta, K. L.; Ross, D. K.

2012-01-01

Carbonaceous chondrite organic matter represents a fossil record of reactions that occurred in a range of physically, spatially and temporally distinct environments, from the interstellar medium to asteroid parent bodies. While bulk chemical analysis has provided a detailed view of the nature and diversity of this organic matter, almost nothing is known about its spatial distribution and mineralogical relationships. Such information is nevertheless critical to deciphering its formation processes and evolutionary history.

High Risk Behaviors in Marine Mammals: Linking Behavioral Responses to Anthropogenic Disturbance to Biological Consequences

DTIC Science & Technology

2015-09-30

nitrogen) and metabolic byproducts ( lactic acid ) depends on heart rate, and the latter is correlated to stroke frequency in marine mammals, we are...for development of 3- D safety zones for diving marine mammals To promote the incorporation of data from these studies into US Navy environmental...capillarity), and cardiac risk factors that will be mapped on 3- D physical attributes (e.g., home range, hydrostatic pressure) of the marine

Stepping Stone Mechanism: Carrier-Free Long-Range Magnetism Mediated by Magnetized Cation States in Quintuple Layer

NASA Astrophysics Data System (ADS)

Chan, Chunkai; Zhang, Xiaodong; Zhang, Yiou; Tse, Kinfai; Deng, Bei; Zhang, Jingzhao; Zhu, Junyi

2018-01-01

The long-range magnetism observed in group-V tellurides quintuple layers is the only working example of carrier-free dilute magnetic semiconductors (DMS), whereas the physical mechanism is unclear, except the speculation on the band topology enhanced van Vleck paramagnetism. Based on DFT calculations, we find a stable long-range ferromagnetic order in a single quintuple layer of Cr-doped Bi2Te3 or Sb2Te3, with the dopant separation more than 9 Å. This configuration is the global energy minimum among all configurations. Different from the conventional super exchange theory, the magnetism is facilitated by the lone pair derived anti-bonding states near the cations. Such anti-bonding states work as stepping stones merged in the electron sea and conduct magnetism. Further, spin orbit coupling induced band inversion is found to be insignificant in the magnetism. Therefore, our findings directly dismiss the common misbelief that band topology is the only factor that enhances the magnetism. We further demonstrate that removal of the lone pair derived states destroys the long-range magnetism. This novel mechanism sheds light on the fundamental understanding of long-range magnetism and may lead to discoveries of new classes of DMS. Supported by Chinese University of Hong Kong (CUHK) under Grant No 4053084, University Grants Committee of Hong Kong under Grant No 24300814, and the Start-up Funding of CUHK.

Developing INFOMAR's Seabed Mapping Data to Support a Sustainable Marine Economy

NASA Astrophysics Data System (ADS)

Judge, M. T.; Guinan, J.

2016-02-01

As Ireland's national seabed mapping programme, INFOMAR1 (INtegrated mapping FOr the sustainable development of Ireland's MARine resource) enters its eleventh year it continues to provide pivotal seabed mapping data products, e.g. databases, charts and physical habitat maps to support Ireland's Integrated Marine Plan. The programme, jointly coordinated by the Geological Survey of Ireland and the Marine Institute, has gained a world class reputation for developing seabed mapping technologies, infrastructure and expertise. In the government's current Integrated Marine Plan, the programme's critical role in marine spatial planning enabling infrastructural development, research and education has been cited2. INFOMAR's free data policy supports a thriving maritime economy by promoting easy access to seabed mapping datasets that underpin; maritime safety, security and surveillance, governance, business development, research and technology innovation and infrastructure. The first hydrographic surveys of the national marine mapping programme mapped the extent of Ireland's deepest offshore area, whilst in recent years the focus has been to map the coastal and shallow areas. Targeted coastal areas include 26 bays and 3 priority areas for which specialised equipment, techniques and vessels are required. This talk will discuss how the INFOMAR programme has evolved to address the scientific and technological challenges of seabed mapping across a range of water depths; particularly the challenges associated with addressing inshore data gaps. It will describe how the data converts to bathymetric and geological maps detailing seabed characteristics and habitats. We will expand on how maps are: incorporated into collaborative marine projects such as EMODnet, commercialised to identify marine resources and used as marine decision support tools that drive policy and promote protection of the vastly under discovered marine area.

Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability.

PubMed

Hogeweg, Paulien

2012-01-01

Most of evolutionary theory has abstracted away from how information is coded in the genome and how this information is transformed into traits on which selection takes place. While in the earliest stages of biological evolution, in the RNA world, the mapping from the genotype into function was largely predefined by the physical-chemical properties of the evolving entities (RNA replicators, e.g. from sequence to folded structure and catalytic sites), in present-day organisms, the mapping itself is the result of evolution. I will review results of several in silico evolutionary studies which examine the consequences of evolving the genetic coding, and the ways this information is transformed, while adapting to prevailing environments. Such multilevel evolution leads to long-term information integration. Through genome, network, and dynamical structuring, the occurrence and/or effect of random mutations becomes nonrandom, and facilitates rapid adaptation. This is what does happen in the in silico experiments. Is it also what did happen in biological evolution? I will discuss some data that suggest that it did. In any case, these results provide us with novel search images to tackle the wealth of biological data.

cDF Theory Software for mesoscopic modeling of equilibrium and transport phenomena

DOE Office of Scientific and Technical Information (OSTI.GOV)

2015-12-01

The approach is based on classical Density Functional Theory ((cDFT) coupled with the Poisson-Nernst-Planck (PNP) transport kinetics model and quantum mechanical description of short-range interaction and elementary transport processes. The model we proposed and implemented is fully atomistic, taking into account pairwise short-range and manybody long-range interactions. But in contrast to standard molecular dynamics (MD) simulations, where long-range manybody interactions are evaluated as a sum of pair-wise atom-atom contributions, we include them analytically based on wellestablished theories of electrostatic and excluded volume interactions in multicomponent systems. This feature of the PNP/cDFT approach allows us to reach well beyond the length-scalesmore » accessible to MD simulations, while retaining the essential physics of interatomic interactions from first principles and in a parameter-free fashion.« less

Soil Parameter Mapping and Ad Hoc Power Analysis to Increase Blocking Efficiency Prior to Establishing a Long-Term Field Experiment.

PubMed

Collins, Doug; Benedict, Chris; Bary, Andy; Cogger, Craig

2015-01-01

The spatial heterogeneity of soil and weed populations poses a challenge to researchers. Unlike aboveground variability, below-ground variability is more difficult to discern without a strategic soil sampling pattern. While blocking is commonly used to control environmental variation, this strategy is rarely informed by data about current soil conditions. Fifty georeferenced sites were located in a 0.65 ha area prior to establishing a long-term field experiment. Soil organic matter (OM) and weed seed bank populations were analyzed at each site and the spatial structure was modeled with semivariograms and interpolated with kriging to map the surface. These maps were used to formulate three strategic blocking patterns and the efficiency of each pattern was compared to a completely randomized design and a west to east model not informed by soil variability. Compared to OM, weeds were more variable across the landscape and had a shorter range of autocorrelation, and models to increase blocking efficiency resulted in less increase in power. Weeds and OM were not correlated, so no model examined improved power equally for both parameters. Compared to the west to east blocking pattern, the final blocking pattern chosen resulted in a 7-fold increase in power for OM and a 36% increase in power for weeds.

A new multi-scale geomorphological landscape GIS for the Netherlands

NASA Astrophysics Data System (ADS)

Weerts, Henk; Kosian, Menne; Baas, Henk; Smit, Bjorn

2013-04-01

At present, the Cultural Heritage Agency of the Netherlands is developing a nationwide landscape Geographical Information System (GIS). In this new conceptual approach, the Agency puts together several multi-scale landscape classifications in a GIS. The natural physical landscapes lie at the basis of this GIS, because these landscapes provide the natural boundary conditions for anthropogenic. At the local scale a nationwide digital geomorphological GIS is available in the Netherlands. This map, that was originally mapped at 1:50,000 from the late 1970's to the 1990's, is based on geomorphometrical (observable and measurable in the field), geomorphological and, lithological and geochronological criteria. When used at a national scale, the legend of this comprehensive geomorphological map is very complex which hampers use in e.g. planning practice or predictive archaeology. At the national scale several landscape classifications have been in use in the Netherlands since the early 1950's, typically ranging in the order of 10 -15 landscape units for the entire country. A widely used regional predictive archaeological classification has 13 archaeo-landscapes. All these classifications have been defined "top-down" and their actual content and boundaries have only been broadly defined. Thus, these classifications have little or no meaning at a local scale. We have tried to combine the local scale with the national scale. To do so, we first defined national physical geographical regions based on the new 2010 national geological map 1:500,000. We also made sure there was a reference with the European LANMAP2 classification. We arrived at 20 landscape units at the national scale, based on (1) genesis, (2) large-scale geomorphology, (3) lithology of the shallow sub-surface and (4) age. These criteria that were chosen because the genesis of the landscape largely determines its (scale of) morphology and lithology that in turn determine hydrological conditions. All together, they define the natural boundary conditions for anthropogenic use. All units have been defined, mapped and described based on these criteria. This enables the link with the European LANMAP2 GIS. The unit "Till-plateau sand region" for instance runs deep into Germany and even Poland. At the local scale, the boundaries of the national units can be defined and precisely mapped by linking them to the 1:50,000 geomorphological map polygons. Each national unit consists of a typical assemblage of local geomorphological units. So, the newly developed natural physical landscape map layer can be used from the local to the European scale.

Geographical Variations in the Environmental Determinants of Physical Inactivity among U.S. Adults.

PubMed

An, Ruopeng; Li, Xinye; Jiang, Ning

2017-10-31

Physical inactivity is a major modifiable risk factor for morbidity, disability and premature mortality worldwide. This study assessed the geographical variations in the impact of environmental quality on physical inactivity among U.S. adults. Data on county-level prevalence of leisure-time physical inactivity came from the Behavioral Risk Factor Surveillance System. County environment was measured by the Environmental Quality Index (EQI), a comprehensive index of environmental conditions that affect human health. The overall EQI consists of five subdomains-air, water, land, social, and built environment. Geographically weighted regressions (GWRs) were performed to estimate and map county-specific impact of overall EQI and its five subdomains on physical inactivity prevalence. The prevalence of leisure-time physical inactivity among U.S. counties was 25% in 2005. On average, one standard deviation decrease in the overall EQI was associated with an increase in county-level prevalence of leisure-time physical inactivity by nearly 1%. However, substantial geographical variations in the estimated environmental determinants of physical inactivity were present. The estimated changes of county-level prevalence of leisure-time physical inactivity resulted from one standard deviation decrease of the overall EQI ranged from an increase of over 3% to a decrease of nearly 2% across U.S. counties. Analogous, the estimated changes of county-level prevalence of leisure-time physical inactivity resulted from one standard deviation decrease of the EQI air, water, land, social, and built environment subdomains ranged from an increase of 2.6%, 1.5%, 2.9%, 3.3%, and 1.7% to a decrease of 2.9%, 1.4%, 2.4%, 2.4%, and 0.8% across U.S. counties, respectively. Given the substantial heterogeneities in the environmental determinants of physical inactivity, locally customized physical activity interventions are warranted to address the most concerning area-specific environmental issue.

High Energy Physics Exascale Requirements Review. An Office of Science review sponsored jointly by Advanced Scientific Computing Research and High Energy Physics, June 10-12, 2015, Bethesda, Maryland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Habib, Salman; Roser, Robert; Gerber, Richard

The U.S. Department of Energy (DOE) Office of Science (SC) Offices of High Energy Physics (HEP) and Advanced Scientific Computing Research (ASCR) convened a programmatic Exascale Requirements Review on June 10–12, 2015, in Bethesda, Maryland. This report summarizes the findings, results, and recommendations derived from that meeting. The high-level findings and observations are as follows. Larger, more capable computing and data facilities are needed to support HEP science goals in all three frontiers: Energy, Intensity, and Cosmic. The expected scale of the demand at the 2025 timescale is at least two orders of magnitude — and in some cases greatermore » — than that available currently. The growth rate of data produced by simulations is overwhelming the current ability of both facilities and researchers to store and analyze it. Additional resources and new techniques for data analysis are urgently needed. Data rates and volumes from experimental facilities are also straining the current HEP infrastructure in its ability to store and analyze large and complex data volumes. Appropriately configured leadership-class facilities can play a transformational role in enabling scientific discovery from these datasets. A close integration of high-performance computing (HPC) simulation and data analysis will greatly aid in interpreting the results of HEP experiments. Such an integration will minimize data movement and facilitate interdependent workflows. Long-range planning between HEP and ASCR will be required to meet HEP’s research needs. To best use ASCR HPC resources, the experimental HEP program needs (1) an established, long-term plan for access to ASCR computational and data resources, (2) the ability to map workflows to HPC resources, (3) the ability for ASCR facilities to accommodate workflows run by collaborations potentially comprising thousands of individual members, (4) to transition codes to the next-generation HPC platforms that will be available at ASCR facilities, (5) to build up and train a workforce capable of developing and using simulations and analysis to support HEP scientific research on next-generation systems.« less

The Practical Application of Aqueous Geochemistry in Mapping Groundwater Flow Systems in Fractured Rock Masses

NASA Astrophysics Data System (ADS)

Bursey, G.; Seok, E.; Gale, J. E.

2017-12-01

Flow to underground mines and open pits takes place through an interconnected network of regular joints/fractures and intermediate to large scale structural features such as faults and fracture zones. Large scale features can serve either as high permeability pathways or as barriers to flow, depending on the internal characteristics of the structure. Predicting long term water quality in barrier-well systems and long-term mine water inflows over a mine life, as a mine expands, requires the use of a 3D numerical flow and transport code. The code is used to integrate the physical geometry of the fractured-rock mass with porosity, permeability, hydraulic heads, storativity and recharge data and construct a model of the flow system. Once that model has been calibrated using hydraulic head and permeability/inflow data, aqueous geochemical and isotopic data provide useful tools for validating flow-system properties, when one is able to recognize and account for the non-ideal or imperfect aspects of the sampling methods used in different mining environments. If groundwater samples are collected from discrete depths within open boreholes, water in those boreholes have the opportunity to move up or down in response to the forces that drive groundwater flow, whether they be hydraulic gradients, gas pressures, or density differences associated with variations in salinity. The use of Br/Cl ratios, for example, can be used to determine if there is active flow into, or out of, the boreholes through open discontinuities in the rock mass (i.e., short-circuiting). Natural groundwater quality can also be affected to varying degrees by mixing with drilling fluids. The combined use of inorganic chemistry and stable isotopes can be used effectively to identify dilution signals and map the dilution patterns through a range of fresh, brackish and saline water types. The stable isotopes of oxygen and hydrogen are nearly ideal natural tracers of water, but situations occur when deep groundwater samples can plot to the left of the meteoric water line as a result of isotopic exchange between meteoric water and silicate rock in near-surface environments at low temperatures. These and other examples are considered in the practical application of aqueous geochemistry in helping to map flow systems in fractured-rock systems.

Short-Arc Analysis of Intersatellite Tracking Data in a Gravity Mapping Mission

NASA Technical Reports Server (NTRS)

Rowlands, David D.; Ray, Richard D.; Chinn, Douglas S.; Lemoine, Frank G.; Smith, David E. (Technical Monitor)

2001-01-01

A technique for the analysis of low-low intersatellite range-rate data in a gravity mapping mission is explored. The technique is based on standard tracking data analysis for orbit determination but uses a spherical coordinate representation of the 12 epoch state parameters describing the baseline between the two satellites. This representation of the state parameters is exploited to allow the intersatellite range-rate analysis to benefit from information provided by other tracking data types without large simultaneous multiple data type solutions. The technique appears especially valuable for estimating gravity from short arcs (e.g., less than 15 minutes) of data. Gravity recovery simulations which use short arcs are compared with those using arcs a day in length. For a high-inclination orbit, the short-arc analysis recovers low-order gravity coefficients remarkably well, although higher order terms, especially sectorial terms, are less accurate. Simulations suggest that either long or short arcs of GRACE data are likely to improve parts of the geopotential spectrum by orders of magnitude.

Long-term Plan for Concrete Pavement Research and Technology--The Concrete Pavement Road Map : Volume II, Tracks

DOT National Transportation Integrated Search

2005-09-01

The Long-Term Plan for Concrete Pavement Research and Technology (CP Road Map) is a holistic, strategic : plan for concrete pavement research and technology transfer. The CP Road Map is a 7- to 10-year plan that : includes 12 distinct but integrated ...

Long-term Plan for Concrete Pavement Research and Technology--the Concrete Pavement Road Map (second generation) : Volume II, Tracks

DOT National Transportation Integrated Search

2012-07-01

The Long-Term Plan for Concrete Pavement Research and Technology (CP Road Map) is a holistic strategic plan for : concrete pavement research and technology transfer. The CP Road Map is a living plan that includes 12 distinct but : integrated research...

A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of synteny with model fish genomes

USDA-ARS?s Scientific Manuscript database

In this paper we generated DNA fingerprints and end sequences from bacterial artificial chromosomes (BACs) from two new libraries to improve the first generation integrated physical and genetic map of the rainbow trout (Oncorhynchus mykiss) genome. The current version of the physical map is compose...

Evaluating data-driven causal inference techniques in noisy physical and ecological systems

NASA Astrophysics Data System (ADS)

Tennant, C.; Larsen, L.

2016-12-01

Causal inference from observational time series challenges traditional approaches for understanding processes and offers exciting opportunities to gain new understanding of complex systems where nonlinearity, delayed forcing, and emergent behavior are common. We present a formal evaluation of the performance of convergent cross-mapping (CCM) and transfer entropy (TE) for data-driven causal inference under real-world conditions. CCM is based on nonlinear state-space reconstruction, and causality is determined by the convergence of prediction skill with an increasing number of observations of the system. TE is the uncertainty reduction based on transition probabilities of a pair of time-lagged variables. With TE, causal inference is based on asymmetry in information flow between the variables. Observational data and numerical simulations from a number of classical physical and ecological systems: atmospheric convection (the Lorenz system), species competition (patch-tournaments), and long-term climate change (Vostok ice core) were used to evaluate the ability of CCM and TE to infer causal-relationships as data series become increasingly corrupted by observational (instrument-driven) or process (model-or -stochastic-driven) noise. While both techniques show promise for causal inference, TE appears to be applicable to a wider range of systems, especially when the data series are of sufficient length to reliably estimate transition probabilities of system components. Both techniques also show a clear effect of observational noise on causal inference. For example, CCM exhibits a negative logarithmic decline in prediction skill as the noise level of the system increases. Changes in TE strongly depend on noise type and which variable the noise was added to. The ability of CCM and TE to detect driving influences suggest that their application to physical and ecological systems could be transformative for understanding driving mechanisms as Earth systems undergo change.

The ecological future of the North American bison: Conceiving long-term, large-scale conservation of a species

USGS Publications Warehouse

Sanderson, E.W.; Redford, Kent; Weber, Bill; Aune, K.; Baldes, Dick; Berger, J.; Carter, Dave; Curtin, C.; Derr, James N.; Dobrott, S.J.; Fearn, Eva; Fleener, Craig; Forrest, Steven C.; Gerlach, Craig; Gates, C. Cormack; Gross, J.E.; Gogan, P.; Grassel, Shaun M.; Hilty, Jodi A.; Jensen, Marv; Kunkel, Kyran; Lammers, Duane; List, R.; Minkowski, Karen; Olson, Tom; Pague, Chris; Robertson, Paul B.; Stephenson, Bob

2008-01-01

Many wide-ranging mammal species have experienced significant declines over the last 200 years; restoring these species will require long-term, large-scale recovery efforts. We highlight 5 attributes of a recent range-wide vision-setting exercise for ecological recovery of the North American bison (Bison bison) that are broadly applicable to other species and restoration targets. The result of the exercise, the “Vermejo Statement” on bison restoration, is explicitly (1) large scale, (2) long term, (3) inclusive, (4) fulfilling of different values, and (5) ambitious. It reads, in part, “Over the next century, the ecological recovery of the North American bison will occur when multiple large herds move freely across extensive landscapes within all major habitats of their historic range, interacting in ecologically significant ways with the fullest possible set of other native species, and inspiring, sustaining and connecting human cultures.” We refined the vision into a scorecard that illustrates how individual bison herds can contribute to the vision. We also developed a set of maps and analyzed the current and potential future distributions of bison on the basis of expert assessment. Although more than 500,000 bison exist in North America today, we estimated they occupy <1% of their historical range and in no place express the full range of ecological and social values of previous times. By formulating an inclusive, affirmative, and specific vision through consultation with a wide range of stakeholders, we hope to provide a foundation for conservation of bison, and other wide-ranging species, over the next 100 years.

Refined potentials for rare gas atom adsorption on rare gas and alkali-halide surfaces

NASA Technical Reports Server (NTRS)

Wilson, J. W.; Heinbockel, J. H.; Outlaw, R. A.

1985-01-01

The utilization of models of interatomic potential for physical interaction to estimate the long range attractive potential for rare gases and ions is discussed. The long range attractive force is calculated in terms of the atomic dispersion properties. A data base of atomic dispersion parameters for rare gas atoms, alkali ion, and halogen ions is applied to the study of the repulsive core; the procedure for evaluating the repulsive core of ion interactions is described. The interaction of rare gas atoms on ideal rare gas solid and alkali-halide surfaces is analyzed; zero coverage absorption potentials are derived.

Consideration of Experimental Approaches in the Physical and Biological Sciences in Designing Long-Term Watershed Studies in Forested Landscapes

NASA Astrophysics Data System (ADS)

Stallard, R. F.

2011-12-01

The importance of biological processes in controlling weathering, erosion, stream-water composition, soil formation, and overall landscape development is generally accepted. The U.S. Geological Survey (USGS) Water, Energy, and Biogeochemical Budgets (WEBB) Project in eastern Puerto Rico and Panama and the Smithsonian Tropical Research Institute (STRI) Panama Canal Watershed Experiment (PCWE) are landscape-scale studies based in the humid tropics where the warm temperatures, moist conditions, and luxuriant vegetation promote especially rapid biological and chemical processes - photosynthesis, respiration, decay, and chemical weathering. In both studies features of small-watershed, large-watershed, and landscape-scale-biology experiments are blended to satisfy the research needs of the physical and biological sciences. The WEBB Project has successfully synthesized its first fifteen years of data, and has addressed the influence of land cover, geologic, topographic, and hydrologic variability, including huge storms on a wide range of hydrologic, physical, and biogeochemical processes. The ongoing PCWE should provide a similar synthesis of a moderate-sized humid tropical watershed. The PCWE and the Agua Salud Project (ASP) within the PCWE are now addressing the role of land cover (mature forests, pasture, invasive-grass dominated, secondary succession, native species plantation, and teak) at scales ranging from small watersheds to the whole Panama Canal watershed. Biologists have participated in the experimental design at both watershed scales, and small (0.1 ha) to large (50 ha) forest-dynamic plots have a central role in interfacing between physical scientists and biologists. In these plots, repeated, high-resolution mapping of all woody plants greater than 1-cm diameter provides a description of population changes through time presumably reflecting individual life histories, interactions with other organisms and the influence of landscape processes and climate, thereby bridging the research needs and conceptual scales of hydrologists and biogeochemists with those of biologists. Both experiments are embedded in larger data-collection networks: the WEBB within the hydrological and meteorological monitoring programs of the USGS and other federal agencies, and the PCWE in the long-term monitoring conducted by the Panama Canal Authority (ACP), its antecedents, and STRI. Examination of landscape-scale processes in a changing world requires the development of detailed landscape-scale data sets, including a formulation of reference states that can act as surrogate experimental controls. For example, the concept of a landscape steady state provides a convenient reference in which present-day observations can be interpreted. Extreme hydrological states must also be described, and both WEBB and PCWE have successfully examined the role of droughts and large storms and their impact on geomorphology, biogeochemistry, and biology. These experiments also have provided platforms for research endeavors never contemplated in the original objectives, a testament to the importance of developing approaches that consider the needs of physical and biological sciences.

Final Environmental Impact Statement for Proposed Barry M. Goldwater Range East Range Enhancements (Including First and Second Record of Decision)

DTIC Science & Technology

2010-10-01

modernization has occurred during the last decade, much of the current training infrastructure (including physical and electronic simulations of targets and...delivered air-to-groWld weapons (including precision- guidance systems and stand-off [i.e., long-range] capabilities), electronic sensing and... electronically score pilot performance and record it for post-mission replay. The STA will consist of 640 acres, of which up to 400 acres will be developed

Coastal vulnerability assessment of the Northern Gulf of Mexico to sea-level rise and coastal change

USGS Publications Warehouse

Pendleton, E.A.; Barras, J.A.; Williams, S.J.; Twichell, D.C.

2010-01-01

A coastal vulnerability index (CVI) was used to map the relative vulnerability of the coast to future sea-level rise along the Northern Gulf of Mexico from Galveston, TX, to Panama City, FL. The CVI ranks the following in terms of their physical contribution to sea-level rise-related coastal change: geomorphology, regional coastal slope, rate of relative sea-level rise, historical shoreline change rate, mean tidal range, and mean significant wave height. The rankings for each variable are combined and an index value is calculated for 1-kilometer grid cells along the coast. The CVI highlights those regions where the physical effects of sea-level rise might be the greatest. The CVI assessment presented here builds on an earlier assessment conducted for the Gulf of Mexico. Recent higher resolution shoreline change, land loss, elevation, and subsidence data provide the foundation for a better assessment for the Northern Gulf of Mexico. The areas along the Northern Gulf of Mexico that are likely to be most vulnerable to sea-level rise are parts of the Louisiana Chenier Plain, Teche-Vermillion Basin, and the Mississippi barrier islands, as well as most of the Terrebonne and Barataria Bay region and the Chandeleur Islands. These very high vulnerability areas have the highest rates of relative sea-level rise and the highest rates of shoreline change or land area loss. The information provided by coastal vulnerability assessments can be used in long-term coastal management and policy decision making.

Application of Intervention Mapping to the Development of a Complex Physical Therapist Intervention.

PubMed

Jones, Taryn M; Dear, Blake F; Hush, Julia M; Titov, Nickolai; Dean, Catherine M

2016-12-01

Physical therapist interventions, such as those designed to change physical activity behavior, are often complex and multifaceted. In order to facilitate rigorous evaluation and implementation of these complex interventions into clinical practice, the development process must be comprehensive, systematic, and transparent, with a sound theoretical basis. Intervention Mapping is designed to guide an iterative and problem-focused approach to the development of complex interventions. The purpose of this case report is to demonstrate the application of an Intervention Mapping approach to the development of a complex physical therapist intervention, a remote self-management program aimed at increasing physical activity after acquired brain injury. Intervention Mapping consists of 6 steps to guide the development of complex interventions: (1) needs assessment; (2) identification of outcomes, performance objectives, and change objectives; (3) selection of theory-based intervention methods and practical applications; (4) organization of methods and applications into an intervention program; (5) creation of an implementation plan; and (6) generation of an evaluation plan. The rationale and detailed description of this process are presented using an example of the development of a novel and complex physical therapist intervention, myMoves-a program designed to help individuals with an acquired brain injury to change their physical activity behavior. The Intervention Mapping framework may be useful in the development of complex physical therapist interventions, ensuring the development is comprehensive, systematic, and thorough, with a sound theoretical basis. This process facilitates translation into clinical practice and allows for greater confidence and transparency when the program efficacy is investigated. © 2016 American Physical Therapy Association.

Spaceborne imaging radar research in the 90's

NASA Technical Reports Server (NTRS)

Elachi, Charles

1986-01-01

The imaging radar experiments on SEASAT and on the space shuttle (SIR-A and SIR-B) have led to a wide interest in the use of spaceborne imaging radars in Earth and planetary sciences. The radar sensors provide unique and complimentary information to what is acquired with visible and infrared imagers. This includes subsurface imaging in arid regions, all weather observation of ocean surface dynamic phenomena, structural mapping, soil moisture mapping, stereo imaging and resulting topographic mapping. However, experiments up to now have exploited only a very limited range of the generic capability of radar sensors. With planned sensor developments in the late 80's and early 90's, a quantum jump will be made in our ability to fully exploit the potential of these sensors. These developments include: multiparameter research sensors such as SIR-C and X-SAR, long-term and global monitoring sensors such as ERS-1, JERS-1, EOS, Radarsat, GLORI and the spaceborne sounder, planetary mapping sensors such as the Magellan and Cassini/Titan mappers, topographic three-dimensional imagers such as the scanning radar altimeter and three-dimensional rain mapping. These sensors and their associated research are briefly described.

The Effectiveness of Concept Maps in Teaching Physics Concepts Applied to Engineering Education: Experimental Comparison of the Amount of Learning Achieved with and without Concept Maps

ERIC Educational Resources Information Center

Martinez, Guadalupe; Perez, Angel Luis; Suero, Maria Isabel; Pardo, Pedro J.

2013-01-01

A study was conducted to quantify the effectiveness of concept maps in learning physics in engineering degrees. The following research question was posed: What was the difference in learning results from the use of concept maps to study a particular topic in an engineering course? The study design was quasi-experimental and used a post-test as a…

Bayesian Analysis of Non-Gaussian Long-Range Dependent Processes

NASA Astrophysics Data System (ADS)

Graves, Timothy; Watkins, Nicholas; Franzke, Christian; Gramacy, Robert

2013-04-01

Recent studies [e.g. the Antarctic study of Franzke, J. Climate, 2010] have strongly suggested that surface temperatures exhibit long-range dependence (LRD). The presence of LRD would hamper the identification of deterministic trends and the quantification of their significance. It is well established that LRD processes exhibit stochastic trends over rather long periods of time. Thus, accurate methods for discriminating between physical processes that possess long memory and those that do not are an important adjunct to climate modeling. As we briefly review, the LRD idea originated at the same time as H-selfsimilarity, so it is often not realised that a model does not have to be H-self similar to show LRD [e.g. Watkins, GRL Frontiers, 2013]. We have used Markov Chain Monte Carlo algorithms to perform a Bayesian analysis of Auto-Regressive Fractionally-Integrated Moving-Average ARFIMA(p,d,q) processes, which are capable of modeling LRD. Our principal aim is to obtain inference about the long memory parameter, d, with secondary interest in the scale and location parameters. We have developed a reversible-jump method enabling us to integrate over different model forms for the short memory component. We initially assume Gaussianity, and have tested the method on both synthetic and physical time series. Many physical processes, for example the Faraday Antarctic time series, are significantly non-Gaussian. We have therefore extended this work by weakening the Gaussianity assumption, assuming an alpha-stable distribution for the innovations, and performing joint inference on d and alpha. Such a modified FARIMA(p,d,q) process is a flexible, initial model for non-Gaussian processes with long memory. We will present a study of the dependence of the posterior variance of the memory parameter d on the length of the time series considered. This will be compared with equivalent error diagnostics for other measures of d.

Braiding by Majorana tracking and long-range CNOT gates with color codes

NASA Astrophysics Data System (ADS)

Litinski, Daniel; von Oppen, Felix

2017-11-01

Color-code quantum computation seamlessly combines Majorana-based hardware with topological error correction. Specifically, as Clifford gates are transversal in two-dimensional color codes, they enable the use of the Majoranas' non-Abelian statistics for gate operations at the code level. Here, we discuss the implementation of color codes in arrays of Majorana nanowires that avoid branched networks such as T junctions, thereby simplifying their realization. We show that, in such implementations, non-Abelian statistics can be exploited without ever performing physical braiding operations. Physical braiding operations are replaced by Majorana tracking, an entirely software-based protocol which appropriately updates the Majoranas involved in the color-code stabilizer measurements. This approach minimizes the required hardware operations for single-qubit Clifford gates. For Clifford completeness, we combine color codes with surface codes, and use color-to-surface-code lattice surgery for long-range multitarget CNOT gates which have a time overhead that grows only logarithmically with the physical distance separating control and target qubits. With the addition of magic state distillation, our architecture describes a fault-tolerant universal quantum computer in systems such as networks of tetrons, hexons, or Majorana box qubits, but can also be applied to nontopological qubit platforms.

A geomorphological seabed classification for the Weddell Sea, Antarctica

NASA Astrophysics Data System (ADS)

Jerosch, Kerstin; Kuhn, Gerhard; Krajnik, Ingo; Scharf, Frauke Katharina; Dorschel, Boris

2016-06-01

Sea floor morphology plays an important role in many scientific disciplines such as ecology, hydrology and sedimentology since geomorphic features can act as physical controls for e.g. species distribution, oceanographically flow-path estimations or sedimentation processes. In this study, we provide a terrain analysis of the Weddell Sea based on the 500 m × 500 m resolution bathymetry data provided by the mapping project IBCSO. Seventeen seabed classes are recognized at the sea floor based on a fine and broad scale Benthic Positioning Index calculation highlighting the diversity of the glacially carved shelf. Beside the morphology, slope, aspect, terrain rugosity and hillshade were calculated and supplied to the data archive PANGAEA. Applying zonal statistics to the geomorphic features identified unambiguously the shelf edge of the Weddell Sea with a width of 45-70 km and a mean depth of about 1200 m ranging from 270 m to 4300 m. A complex morphology of troughs, flat ridges, pinnacles, steep slopes, seamounts, outcrops, and narrow ridges, structures with approx. 5-7 km width, build an approx. 40-70 km long swath along the shelf edge. The study shows where scarps and depressions control the connection between shelf and abyssal and where high and low declination within the scarps e.g. occur. For evaluation purpose, 428 grain size samples were added to the seabed class map. The mean values of mud, sand and gravel of those samples falling into a single seabed class was calculated, respectively, and assigned to a sediment texture class according to a common sediment classification scheme.

REU Solar and Space Physics Summer School

NASA Astrophysics Data System (ADS)

Snow, M. A.; Wood, E. L.

2011-12-01

The Research Experience for Undergrads (REU) program in Solar and Space Physics at the University of Colorado begins with a week of lectures and labs on Solar and Space Physics. The students in our program come from a variety of majors (physics, engineering, meteorology, etc.) and from a wide range of schools (small liberal arts colleges up through large research universities). The majority of the students have never been exposed to solar and space physics before arriving in Boulder to begin their research projects. We have developed a week-long crash course in the field using the expertise of scientists in Boulder and the labs designed by the Center for Integrated Space Weather Modeling (CISM).

Sakurai Prize: The Future of Higgs Physics

NASA Astrophysics Data System (ADS)

Dawson, Sally

2017-01-01

The discovery of the Higgs boson relied critically on precision calculations. The quantum contributions from the Higgs boson to the W and top quark masses suggested long before the Higgs discovery that a Standard Model Higgs boson should have a mass in the 100-200 GeV range. The experimental extraction of Higgs properties requires normalization to the predicted Higgs production and decay rates, for which higher order corrections are also essential. As Higgs physics becomes a mature subject, more and more precise calculations will be required. If there is new physics at high scales, it will contribute to the predictions and precision Higgs physics will be a window to beyond the Standard Model physics.

Eastern Denali Fault surface trace map, eastern Alaska and Yukon, Canada

USGS Publications Warehouse

Bender, Adrian M.; Haeussler, Peter J.

2017-05-04

We map the 385-kilometer (km) long surface trace of the right-lateral, strike-slip Denali Fault between the Totschunda-Denali Fault intersection in Alaska, United States and the village of Haines Junction, Yukon, Canada. In Alaska, digital elevation models based on light detection and ranging and interferometric synthetic aperture radar data enabled our fault mapping at scales of 1:2,000 and 1:10,000, respectively. Lacking such resources in Yukon, we developed new structure-from-motion digital photogrammetry products from legacy aerial photos to map the fault surface trace at a scale of 1:10,000 east of the international border. The section of the fault that we map, referred to as the Eastern Denali Fault, did not rupture during the 2002 Denali Fault earthquake (moment magnitude 7.9). Seismologic, geodetic, and geomorphic evidence, along with a paleoseismic record of past ground-rupturing earthquakes, demonstrate Holocene and contemporary activity on the fault, however. This map of the Eastern Denali Fault surface trace complements other data sets by providing an openly accessible digital interpretation of the location, length, and continuity of the fault’s surface trace based on the accompanying digital topography dataset. Additionally, the digitized fault trace may provide geometric constraints useful for modeling earthquake scenarios and related seismic hazard.

Robust reconstruction of B1 (+) maps by projection into a spherical functions space.

PubMed

Sbrizzi, Alessandro; Hoogduin, Hans; Lagendijk, Jan J; Luijten, Peter; van den Berg, Cornelis A T

2014-01-01

Several parallel transmit MRI techniques require knowledge of the transmit radiofrequency field profiles (B1 (+) ). During the past years, various methods have been developed to acquire this information. Often, these methods suffer from long measurement times and produce maps exhibiting regions with poor signal-to-noise ratio and artifacts. In this article, a model-based reconstruction procedure is introduced that improves the robustness of B1 (+) mapping. The missing information from undersampled B1 (+) maps and the regions of poor signal to noise ratio are reconstructed through projection into the space of spherical functions that arise naturally from the solution of the Helmholtz equations in the spherical coordinate system. As a result, B1 (+) data over a limited range of the field of view/volume is sufficient to reconstruct the B1 (+) over the full spatial domain in a fast and robust way. The same model is exploited to filter the noise of the measured maps. Results from simulations and in vivo measurements confirm the validity of the proposed method. A spherical functions model can well approximate the magnetic fields inside the body with few basis terms. Exploiting this compression capability, B1 (+) maps are reconstructed in regions of unknown or corrupted values. Copyright © 2013 Wiley Periodicals, Inc.

A three-dimensional mapping of the ocean based on environmental data

USGS Publications Warehouse

Sayre, Roger; Wright, Dawn J.; Breyer, Sean P.; Butler, Kevin; Van Graafeiland, Keith; Costello, Mark J.; Harris, Peter T.; Goodin, Kathleen; Guinotte, John M.; Basher, Zeenatul; Kavanaugh, Maria T.; Halpin, Patrick N.; Monaco, Mark E.; Cressie, Noel; Aniello, Peter; Frye, Charles; Stephens, Drew

2017-01-01

The existence, sources, distribution, circulation, and physicochemical nature of macroscale oceanic water bodies have long been a focus of oceanographic inquiry. Building on that work, this paper describes an objectively derived and globally comprehensive set of 37 distinct volumetric region units, called ecological marine units (EMUs). They are constructed on a regularly spaced ocean point-mesh grid, from sea surface to seafloor, and attributed with data from the 2013 World Ocean Atlas version 2. The point attribute data are the means of the decadal averages from a 57-year climatology of six physical and chemical environment parameters (temperature, salinity, dissolved oxygen, nitrate, phosphate, and silicate). The database includes over 52 million points that depict the global ocean in x, y, and z dimensions. The point data were statistically clustered to define the 37 EMUs, which represent physically and chemically distinct water volumes based on spatial variation in the six marine environmental characteristics used. The aspatial clustering to produce the 37 EMUs did not include point location or depth as a determinant, yet strong geographic and vertical separation was observed. Twenty-two of the 37 EMUs are globally or regionally extensive, and account for 99% of the ocean volume, while the remaining 15 are smaller and shallower, and occur around coastal features. We assessed the vertical distribution of EMUs in the water column and placed them into classical depth zones representing epipelagic (0 m to 200 m), mesopelagic (200 m to 1,000 m), bathypelagic (1,000 m to 4,000 m) and abyssopelagic (>4,000 m) layers. The mapping and characterization of the EMUs represent a new spatial framework for organizing and understanding the physical, chemical, and ultimately biological properties and processes of oceanic water bodies. The EMUs are an initial objective partitioning of the ocean using long-term historical average data, and could be extended in the future by adding new classification variables and by introducing functionality to develop time-specific EMU distribution maps. The EMUs are an open-access resource, and as both a standardized geographic framework and a baseline physicochemical characterization of the oceanic environment, they are intended to be useful for disturbance assessments, ecosystem accounting exercises, conservation priority setting, and marine protected area network design, along with other research and management applications.

Long-term patterns of air temperatures, daily temperature range, precipitation, grass-reference evapotranspiration and aridity index in the USA Great Plains: Part I. Spatial trends

NASA Astrophysics Data System (ADS)

Kukal, M.; Irmak, S.

2016-11-01

Due to their substantial spatio-temporal behavior, long-term quantification and analyses of important hydrological variables are essential for practical applications in water resources planning, evaluating the water use of agricultural crop production and quantifying crop evapotranspiration patterns and irrigation management vs. hydrologic balance relationships. Observed data at over 800 sites across the Great Plains of USA, comprising of 9 states and 2,307,410 km2 of surface area, which is about 30% of the terrestrial area of the USA, were used to quantify and map large-scale and long-term (1968-2013) spatial trends of air temperatures, daily temperature range (DTR), precipitation, grass-reference evapotranspiration (ETo) and aridity index (AI) at monthly, growing season and annual time steps. Air temperatures had a strong north to south increasing trend, with annual average varying from -1 to 24 °C, and growing season average temperature varying from 8 to 30 °C. DTR gradually decreased from western to eastern parts of the region, with a regional annual and growing season averages of 14.25 °C and 14.79 °C, respectively. Precipitation had a gradual shift towards higher magnitudes from west to east, with the average annual and growing season (May-September) precipitation ranging from 163 to 1486 mm and from 98 to 746 mm, respectively. ETo had a southwest-northeast decreasing trend, with regional annual and growing season averages of 1297 mm and 823 mm, respectively. AI increased from west to east, indicating higher humidity (less arid) towards the east, with regional annual and growing season averages of 0.49 and 0.44, respectively. The spatial datasets and maps for these important climate variables can serve as valuable background for climate change and hydrologic studies in the Great Plains region. Through identification of priority areas from the developed maps, efforts of the concerned personnel and agencies and resources can be diverted towards development of holistic strategies to address water supply and demand challenges under changing climate. These strategies can consist of, but not limited to, advancing water, crop and soil management, and genetic improvements and their relationships with the climatic variables on large scales.

27 CFR 9.113 - North Fork of Long Island.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2013-04-01 2013-04-01 false North Fork of Long Island... North Fork of Long Island. (a) Name. The name of the viticultural area described in this section is “North Fork of Long Island.” (b) Approved maps. The appropriate maps for determining the boundaries of...

27 CFR 9.113 - North Fork of Long Island.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2014-04-01 2014-04-01 false North Fork of Long Island... North Fork of Long Island. (a) Name. The name of the viticultural area described in this section is “North Fork of Long Island.” (b) Approved maps. The appropriate maps for determining the boundaries of...

27 CFR 9.113 - North Fork of Long Island.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 27 Alcohol, Tobacco Products and Firearms 1 2012-04-01 2012-04-01 false North Fork of Long Island... North Fork of Long Island. (a) Name. The name of the viticultural area described in this section is “North Fork of Long Island.” (b) Approved maps. The appropriate maps for determining the boundaries of...

Physical-enhanced secure strategy in an OFDM-PON.

PubMed

Zhang, Lijia; Xin, Xiangjun; Liu, Bo; Yu, Jianjun

2012-01-30

The physical layer of optical access network is vulnerable to various attacks. As the dramatic increase of users and network capacity, the issue of physical-layer security becomes more and more important. This paper proposes a physical-enhanced secure strategy for orthogonal frequency division multiplexing passive optical network (OFDM-PON) by employing frequency domain chaos scrambling. The Logistic map is adopted for the chaos mapping. The chaos scrambling strategy can dynamically allocate the scrambling matrices for different OFDM frames according to the initial condition, which enhance the confidentiality of the physical layer. A mathematical model of this secure system is derived firstly, which achieves a secure transmission at physical layer in OFDM-PON. The results from experimental implementation using Logistic mapped chaos scrambling are also given to further demonstrate the efficiency of this secure strategy. An 10.125 Gb/s 64QAM-OFDM data with Logistic mapped chaos scrambling are successfully transmitted over 25-km single mode fiber (SMF), and the experimental results show that proposed security scheme can protect the system from eavesdropper and attacker, while keep a good performance for the legal ONU.

Statistical regularities of Carbon emission trading market: Evidence from European Union allowances

NASA Astrophysics Data System (ADS)

Zheng, Zeyu; Xiao, Rui; Shi, Haibo; Li, Guihong; Zhou, Xiaofeng

2015-05-01

As an emerging financial market, the trading value of carbon emission trading market has definitely increased. In recent years, the carbon emission allowances have already become a way of investment. They are bought and sold not only by carbon emitters but also by investors. In this paper, we analyzed the price fluctuations of the European Union allowances (EUA) futures in European Climate Exchange (ECX) market from 2007 to 2011. The symmetric and power-law probability density function of return time series was displayed. We found that there are only short-range correlations in price changes (return), while long-range correlations in the absolute of price changes (volatility). Further, detrended fluctuation analysis (DFA) approach was applied with focus on long-range autocorrelations and Hurst exponent. We observed long-range power-law autocorrelations in the volatility that quantify risk, and found that they decay much more slowly than the autocorrelation of return time series. Our analysis also showed that the significant cross correlations exist between return time series of EUA and many other returns. These cross correlations exist in a wide range of fields, including stock markets, energy concerned commodities futures, and financial futures. The significant cross-correlations between energy concerned futures and EUA indicate the physical relationship between carbon emission and energy production process. Additionally, the cross-correlations between financial futures and EUA indicate that the speculation behavior may become an important factor that can affect the price of EUA. Finally we modeled the long-range volatility time series of EUA with a particular version of the GARCH process, and the result also suggests long-range volatility autocorrelations.

A first look at lightning energy determined from GLM

NASA Astrophysics Data System (ADS)

Bitzer, P. M.; Burchfield, J. C.; Brunner, K. N.

2017-12-01

The Geostationary Lightning Mapper (GLM) was launched in November 2016 onboard GOES-16 has been undergoing post launch and product post launch testing. While these have typically focused on lightning metrics such as detection efficiency, false alarm rate, and location accuracy, there are other attributes of the lightning discharge that are provided by GLM data. Namely, the optical energy radiated by lightning may provide information useful for lightning physics and the relationship of lightning energy to severe weather development. This work presents initial estimates of the lightning optical energy detected by GLM during this initial testing, with a focus on observations during field campaign during spring 2017 in Huntsville. This region is advantageous for the comparison due to the proliferation of ground-based lightning instrumentation, including a lightning mapping array, interferometer, HAMMA (an array of electric field change meters), high speed video cameras, and several long range VLF networks. In addition, the field campaign included airborne observations of the optical emission and electric field changes. The initial estimates will be compared with previous observations using TRMM-LIS. In addition, a comparison between the operational and scientific GLM data sets will also be discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nikali, K.; Isosomppi, J.; Suomalainen, A.

Infantile onset spinocerebellar ataxia (IOSCA) is a progressive neurological disorder of unknown etiology. It is inherited as an autosomal recessive trait and has so far been reported in just 19 Finnish patients in 13 separate families. We have previously assigned the IOSCA locus (HGMW-approved symbol SCA8) to chromosome 10q, where no previously identified ataxia loci are located. Haplotype analysis combined with genealogical data provided evidence that all the IOSCA cases in Finland originate from a single 30- to 40-generation-old founder mutation. By analyzing extended disease haplotypes observed today, the IOSCA locus can now be restricted to a region between twomore » adjacent microsatellites, D10S192 and D10S1265, with no genetic intermarker distance. We have constructed a detailed physical map of this 270-kb IOSCA region and cytogenetically localized it to 10q24. We have also assigned two previously known genes, PAX2 and CYP17, more precisely into this region, but the sequence analysis of coding regions of these two genes has not revealed mutations in an IOSCA patient. The obtained long-range clones will form the basis for the isolation of a novel ataxia gene. 42 refs., 3 figs.« less

Multilevel Summation of Electrostatic Potentials Using Graphics Processing Units*

PubMed Central

Hardy, David J.; Stone, John E.; Schulten, Klaus

2009-01-01

Physical and engineering practicalities involved in microprocessor design have resulted in flat performance growth for traditional single-core microprocessors. The urgent need for continuing increases in the performance of scientific applications requires the use of many-core processors and accelerators such as graphics processing units (GPUs). This paper discusses GPU acceleration of the multilevel summation method for computing electrostatic potentials and forces for a system of charged atoms, which is a problem of paramount importance in biomolecular modeling applications. We present and test a new GPU algorithm for the long-range part of the potentials that computes a cutoff pair potential between lattice points, essentially convolving a fixed 3-D lattice of “weights” over all sub-cubes of a much larger lattice. The implementation exploits the different memory subsystems provided on the GPU to stream optimally sized data sets through the multiprocessors. We demonstrate for the full multilevel summation calculation speedups of up to 26 using a single GPU and 46 using multiple GPUs, enabling the computation of a high-resolution map of the electrostatic potential for a system of 1.5 million atoms in under 12 seconds. PMID:20161132

An improved approach of register allocation via graph coloring

NASA Astrophysics Data System (ADS)

Gao, Lei; Shi, Ce

2005-03-01

Register allocation is an important part of optimizing compiler. The algorithm of register allocation via graph coloring is implemented by Chaitin and his colleagues firstly and improved by Briggs and others. By abstracting register allocation to graph coloring, the allocation process is simplified. As the physical register number is limited, coloring of the interference graph can"t succeed for every node. The uncolored nodes must be spilled. There is an assumption that almost all the allocation method obeys: when a register is allocated to a variable v, it can"t be used by others before v quit even if v is not used for a long time. This may causes a waste of register resource. The authors relax this restriction under certain conditions and make some improvement. In this method, one register can be mapped to two or more interfered "living" live ranges at the same time if they satisfy some requirements. An operation named merge is defined which can arrange two interfered nodes occupy the same register with some cost. Thus, the resource of register can be used more effectively and the cost of memory access can be reduced greatly.

Extracellular matrix dynamics during vertebrate axis formation.

PubMed

Czirók, András; Rongish, Brenda J; Little, Charles D

2004-04-01

The first evidence for the dynamics of in vivo extracellular matrix (ECM) pattern formation during embryogenesis is presented below. Fibrillin 2 filaments were tracked for 12 h throughout the avian intraembryonic mesoderm using automated light microscopy and algorithms of our design. The data show that these ECM filaments have a reproducible morphogenic destiny that is characterized by directed transport. Fibrillin 2 particles initially deposited in the segmental plate mesoderm are translocated along an unexpected trajectory where they eventually polymerize into an intricate scaffold of cables parallel to the anterior-posterior axis. The cables coalesce near the midline before the appearance of the next-formed somite. Moreover, the ECM filaments define global tissue movements with high precision because the filaments act as passive motion tracers. Quantification of individual and collective filament "behaviors" establish fate maps, trajectories, and velocities. These data reveal a caudally propagating traveling wave pattern in the morphogenetic movements of early axis formation. We conjecture that within vertebrate embryos, long-range mechanical tension fields are coupled to both large-scale patterning and local organization of the ECM. Thus, physical forces or stress fields are essential requirements for executing an emergent developmental pattern-in this case, paraxial fibrillin cable assembly.

New shoreline change data and analysis for the Massachusetts shore with emphasis on Cape Cod and the islands: Mid-1800s to 1994

USGS Publications Warehouse

O'Connell, James F.; Thieler, E. Robert; Schupp, Courtney

2002-01-01

That shorelines change, oftentimes dramatically in short periods of time, is an accepted fact for those who live along the shore. However, when two-thirds or approximately 512 miles of a state's ocean-facing shore exhibits a long-term erosional trend, in some locations eroding at an average annual rate of 12 feet per year, as is the case in Massachusetts, shoreline property owners, prospective shorefront property owners, and coastal managers need to pay particular attention to the future location of the shoreline to avoid physical and economic disasters. The Woods Hole Oceanographic Institution, Sea Grant Program, the U.S. Geological Survey, and the Cape Cod Cooperative Extension recently completed an update and statistical analysis of historical shoreline change along approximately 1,000 miles of Massachusetts' ocean-facing shore, of which 754 miles were statistically analyzed (Thieler, O'Connell and Schupp, 2001; Schupp, Thieler & O'Connell, 2001). The project was funded by the Massachusetts Office of Coastal Zone Management. In general, four to five shoreline positions mapped between the mid-1800s to 1994 were used to analyze changes along the Massachusetts shore. Seventy-six shoreline change maps with accompanying data tables and a Technical Report were produced. The results of this study reveal that approximately two-thirds of the Massachusetts shore is eroding, with 68% of the shore exhibiting a long-term erosional trend, 30% showing long-term accretion, and 2% showing no net change. ln some areas, erosion rates have accelerated based on a comparison study of previous data that was conducted in 1997 (O'Connell, 1997). Ironically, coastal property that commands some of the highest real estate values in the Commonwealth also exhibits the highest consistent long-term average annual erosion rates. This paper describes the data sources used to map historic shorelines in Massachusetts, the methodology used to both plot a new shoreline and analyze the long-term historical data, and describes cautions necessary when interpreting and applying shoreline change data, with site-specific examples along the Massachusetts shore.

Mapping cell-specific functional connections in the mouse brain using ChR2-evoked hemodynamics (Conference Presentation)

NASA Astrophysics Data System (ADS)

Bauer, Adam Q.; Kraft, Andrew; Baxter, Grant A.; Bruchas, Michael; Lee, Jin-Moo; Culver, Joseph P.

2017-02-01

Functional magnetic resonance imaging (fMRI) has transformed our understanding of the brain's functional organization. However, mapping subunits of a functional network using hemoglobin alone presents several disadvantages. Evoked and spontaneous hemodynamic fluctuations reflect ensemble activity from several populations of neurons making it difficult to discern excitatory vs inhibitory network activity. Still, blood-based methods of brain mapping remain powerful because hemoglobin provides endogenous contrast in all mammalian brains. To add greater specificity to hemoglobin assays, we integrated optical intrinsic signal(OIS) imaging with optogenetic stimulation to create an Opto-OIS mapping tool that combines the cell-specificity of optogenetics with label-free, hemoglobin imaging. Before mapping, titrated photostimuli determined which stimulus parameters elicited linear hemodynamic responses in the cortex. Optimized stimuli were then scanned over the left hemisphere to create a set of optogenetically-defined effective connectivity (Opto-EC) maps. For many sites investigated, Opto-EC maps exhibited higher spatial specificity than those determined using spontaneous hemodynamic fluctuations. For example, resting-state functional connectivity (RS-FC) patterns exhibited widespread ipsilateral connectivity while Opto-EC maps contained distinct short- and long-range constellations of ipsilateral connectivity. Further, RS-FC maps were usually symmetric about midline while Opto-EC maps displayed more heterogeneous contralateral homotopic connectivity. Both Opto-EC and RS-FC patterns were compared to mouse connectivity data from the Allen Institute. Unlike RS-FC maps, Thy1-based maps collected in awake, behaving mice closely recapitulated the connectivity structure derived using ex vivo anatomical tracer methods. Opto-OIS mapping could be a powerful tool for understanding cellular and molecular contributions to network dynamics and processing in the mouse brain.

The European Drought Observatory (EDO): Current State and Future Directions

NASA Astrophysics Data System (ADS)

Vogt, Jürgen; Sepulcre, Guadalupe; Magni, Diego; Valentini, Luana; Singleton, Andrew; Micale, Fabio; Barbosa, Paulo

2013-04-01

Europe has repeatedly been affected by droughts, resulting in considerable ecological and economic damage and climate change studies indicate a trend towards increasing climate variability most likely resulting in more frequent drought occurrences also in Europe. Against this background, the European Commission's Joint Research Centre (JRC) is developing methods and tools for assessing, monitoring and forecasting droughts in Europe and develops a European Drought Observatory (EDO) to complement and integrate national activities with a European view. At the core of the European Drought Observatory (EDO) is a portal, including a map server, a metadata catalogue, a media-monitor and analysis tools. The map server presents Europe-wide up-to-date information on the occurrence and severity of droughts, which is complemented by more detailed information provided by regional, national and local observatories through OGC compliant web mapping and web coverage services. In addition, time series of historical maps as well as graphs of the temporal evolution of drought indices for individual grid cells and administrative regions in Europe can be retrieved and analysed. Current work is focusing on validating the available products, developing combined indicators, improving the functionalities, extending the linkage to additional national and regional drought information systems and testing options for medium-range probabilistic drought forecasting across Europe. Longer-term goals include the development of long-range drought forecasting products, the analysis of drought hazard and risk, the monitoring of drought impact and the integration of EDO in a global drought information system. The talk will provide an overview on the development and state of EDO, the different products, and the ways to include a wide range of stakeholders (i.e. European, national river basin, and local authorities) in the development of the system as well as an outlook on the future developments.

Map showing reconnaissance geochemistry in the gold-pyrophyllite belt of northwestern Moore County, North Carolina

USGS Publications Warehouse

Lesure, Frank G.

1981-01-01

Traces of gold and molybdenum are widely disseminated in an area approximately 35 km long and 10 km wide in northwestern Moore County, N.C.  At least 2540 oz. of gold were recovered from 16 or more mines and prospects between 1880 and 1910.  One hundred and ninety rock samples out of 244 collected from old gold mines, pyrophyllite deposits and along roads contain gold quantities ranging from 0.02 to 2.4 parts per million.  In addition, 43 samples out of the 244 taken contain molybdenum in amounts ranging from 4 to 500 parts per million.